Query 007684
Match_columns 593
No_of_seqs 426 out of 2413
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 07:55:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007684.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007684hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 1E-106 4E-111 871.2 50.1 486 93-585 15-501 (501)
2 4g26_A Pentatricopeptide repea 100.0 1.3E-29 4.4E-34 272.1 18.1 204 48-273 9-223 (501)
3 2xpi_A Anaphase-promoting comp 99.8 7.6E-20 2.6E-24 201.1 13.9 345 29-404 79-504 (597)
4 3v33_A Ribonuclease ZC3H12A; r 99.8 5.8E-20 2E-24 168.4 7.2 127 406-538 23-161 (223)
5 2xpi_A Anaphase-promoting comp 99.8 1.1E-18 3.7E-23 191.9 15.8 272 62-406 303-581 (597)
6 3spa_A Mtrpol, DNA-directed RN 99.8 3.6E-19 1.2E-23 196.7 10.2 152 138-310 126-287 (1134)
7 3spa_A Mtrpol, DNA-directed RN 99.8 6.5E-19 2.2E-23 194.7 10.0 150 104-274 127-286 (1134)
8 3v32_B Ribonuclease ZC3H12A; r 99.8 5.4E-19 1.9E-23 158.5 7.5 127 406-538 23-161 (185)
9 1w3b_A UDP-N-acetylglucosamine 99.6 3.5E-13 1.2E-17 139.6 26.0 292 67-405 71-369 (388)
10 1w3b_A UDP-N-acetylglucosamine 99.5 1.4E-13 4.8E-18 142.6 19.0 298 61-405 29-335 (388)
11 2y4t_A DNAJ homolog subfamily 99.5 1.1E-12 3.8E-17 138.3 21.2 303 34-406 26-360 (450)
12 2y4t_A DNAJ homolog subfamily 99.4 3E-12 1E-16 135.0 19.5 295 67-439 30-354 (450)
13 3mkr_A Coatomer subunit epsilo 99.3 4.3E-11 1.5E-15 119.2 19.8 194 59-288 27-228 (291)
14 3hym_B Cell division cycle pro 99.3 5.3E-11 1.8E-15 119.3 18.6 272 61-405 19-300 (330)
15 1b89_A Protein (clathrin heavy 99.2 4.9E-12 1.7E-16 130.4 6.4 253 75-438 15-267 (449)
16 3ieg_A DNAJ homolog subfamily 99.2 5.2E-10 1.8E-14 113.2 18.8 258 67-405 41-336 (359)
17 1fch_A Peroxisomal targeting s 99.2 1.3E-09 4.4E-14 111.2 21.3 265 72-406 34-316 (368)
18 2ho1_A Type 4 fimbrial biogene 99.2 2.3E-09 8E-14 103.1 21.9 197 67-289 41-238 (252)
19 4eqf_A PEX5-related protein; a 99.2 7.2E-10 2.5E-14 113.3 19.0 235 105-406 66-312 (365)
20 3ieg_A DNAJ homolog subfamily 99.2 4.4E-09 1.5E-13 106.3 24.0 196 67-289 7-217 (359)
21 2vq2_A PILW, putative fimbrial 99.2 2.2E-09 7.6E-14 100.9 20.1 197 67-288 12-210 (225)
22 2q7f_A YRRB protein; TPR, prot 99.1 3.2E-09 1.1E-13 101.3 20.7 195 67-288 27-221 (243)
23 2gw1_A Mitochondrial precursor 99.1 3.3E-10 1.1E-14 121.2 15.2 300 48-407 25-404 (514)
24 3hym_B Cell division cycle pro 99.1 2.6E-09 9E-14 106.8 20.4 232 48-308 41-283 (330)
25 4eqf_A PEX5-related protein; a 99.1 1.3E-09 4.3E-14 111.5 18.2 224 48-289 84-310 (365)
26 1fch_A Peroxisomal targeting s 99.1 1.9E-09 6.6E-14 109.9 18.8 251 48-312 83-347 (368)
27 2pl2_A Hypothetical conserved 99.1 4E-09 1.4E-13 99.8 19.5 164 103-288 4-179 (217)
28 2ho1_A Type 4 fimbrial biogene 99.1 1.3E-08 4.3E-13 97.9 23.4 165 105-288 38-203 (252)
29 2pl2_A Hypothetical conserved 99.1 1.3E-09 4.4E-14 103.3 15.8 203 67-287 9-212 (217)
30 3cv0_A Peroxisome targeting si 99.1 5E-10 1.7E-14 112.0 13.7 273 67-403 25-314 (327)
31 2gw1_A Mitochondrial precursor 99.1 9.1E-09 3.1E-13 109.8 23.2 264 105-406 7-369 (514)
32 1b89_A Protein (clathrin heavy 99.1 2.1E-10 7.1E-15 118.3 9.4 188 65-309 33-221 (449)
33 3nf1_A KLC 1, kinesin light ch 99.1 1.3E-08 4.4E-13 100.8 22.4 240 106-404 29-307 (311)
34 3cv0_A Peroxisome targeting si 99.1 2.5E-09 8.6E-14 106.8 17.1 248 48-312 40-303 (327)
35 2vq2_A PILW, putative fimbrial 99.0 6.5E-08 2.2E-12 90.6 23.1 187 104-309 8-196 (225)
36 3uq3_A Heat shock protein STI1 99.0 3.7E-08 1.3E-12 94.5 21.1 225 105-405 6-237 (258)
37 2q7f_A YRRB protein; TPR, prot 99.0 2.4E-08 8.3E-13 95.1 18.9 164 105-288 24-187 (243)
38 3mkr_A Coatomer subunit epsilo 99.0 1.4E-08 4.6E-13 100.9 17.6 196 61-288 62-263 (291)
39 3uq3_A Heat shock protein STI1 99.0 1.5E-08 5.2E-13 97.3 16.5 196 67-288 9-235 (258)
40 3fp2_A TPR repeat-containing p 99.0 1.7E-08 5.7E-13 108.6 18.6 277 67-406 29-409 (537)
41 3fp2_A TPR repeat-containing p 98.9 1.4E-07 4.8E-12 101.3 23.9 243 106-410 245-497 (537)
42 1xnf_A Lipoprotein NLPI; TPR, 98.9 9.1E-08 3.1E-12 92.9 19.6 222 116-405 17-245 (275)
43 1ouv_A Conserved hypothetical 98.9 6.6E-07 2.3E-11 87.2 25.0 164 103-290 5-180 (273)
44 3vtx_A MAMA; tetratricopeptide 98.9 3.6E-07 1.2E-11 83.3 21.5 165 103-288 4-169 (184)
45 3nf1_A KLC 1, kinesin light ch 98.9 2.2E-08 7.5E-13 99.1 14.0 205 67-288 31-306 (311)
46 3as5_A MAMA; tetratricopeptide 98.9 1.6E-07 5.4E-12 84.8 18.6 164 105-288 9-172 (186)
47 1ouv_A Conserved hypothetical 98.8 6.1E-07 2.1E-11 87.5 22.6 205 67-307 10-230 (273)
48 3u4t_A TPR repeat-containing p 98.8 1E-06 3.4E-11 85.4 22.8 236 107-406 6-252 (272)
49 3edt_B KLC 2, kinesin light ch 98.8 3.7E-08 1.3E-12 95.7 11.7 199 73-288 11-280 (283)
50 1xnf_A Lipoprotein NLPI; TPR, 98.7 1E-07 3.5E-12 92.6 14.4 195 67-289 47-244 (275)
51 3as5_A MAMA; tetratricopeptide 98.7 3E-07 1E-11 83.0 15.8 161 67-253 12-172 (186)
52 3edt_B KLC 2, kinesin light ch 98.7 4.3E-07 1.5E-11 88.0 17.3 158 115-288 12-197 (283)
53 2ond_A Cleavage stimulation fa 98.7 4.6E-07 1.6E-11 90.4 17.5 187 75-289 69-270 (308)
54 4abn_A Tetratricopeptide repea 98.7 1E-07 3.6E-12 101.4 13.4 200 67-286 106-318 (474)
55 2h6f_A Protein farnesyltransfe 98.7 4.7E-07 1.6E-11 93.3 17.4 217 60-307 92-321 (382)
56 4gyw_A UDP-N-acetylglucosamine 98.7 8.7E-07 3E-11 98.8 20.1 162 104-288 9-173 (723)
57 3vtx_A MAMA; tetratricopeptide 98.6 5.6E-07 1.9E-11 81.9 15.2 161 67-254 9-170 (184)
58 3u4t_A TPR repeat-containing p 98.6 3.8E-07 1.3E-11 88.5 14.7 195 67-289 7-208 (272)
59 2ond_A Cleavage stimulation fa 98.6 1.7E-06 5.9E-11 86.2 19.6 169 100-289 46-232 (308)
60 4i17_A Hypothetical protein; T 98.6 5.1E-06 1.7E-10 78.4 21.1 153 103-276 6-169 (228)
61 2fo7_A Synthetic consensus TPR 98.6 1.8E-06 6E-11 73.1 15.9 127 107-252 4-130 (136)
62 4gyw_A UDP-N-acetylglucosamine 98.6 4E-07 1.4E-11 101.6 14.0 165 61-253 5-173 (723)
63 2fo7_A Synthetic consensus TPR 98.5 2.8E-06 9.5E-11 71.8 16.0 117 169-288 15-131 (136)
64 4abn_A Tetratricopeptide repea 98.5 1.8E-06 6.1E-11 91.8 17.9 167 101-288 99-286 (474)
65 2h6f_A Protein farnesyltransfe 98.5 1E-06 3.6E-11 90.7 14.4 210 48-288 116-347 (382)
66 4a1s_A PINS, partner of inscut 98.5 3.3E-07 1.1E-11 94.9 10.3 275 67-404 52-372 (411)
67 3ulq_A Response regulator aspa 98.5 2.4E-06 8.3E-11 87.7 16.1 233 110-405 109-369 (383)
68 3ro2_A PINS homolog, G-protein 98.4 1.6E-06 5.4E-11 86.1 12.3 276 67-405 9-333 (338)
69 4g1t_A Interferon-induced prot 98.4 8.9E-06 3.1E-10 85.7 18.1 291 67-408 55-367 (472)
70 1xi4_A Clathrin heavy chain; a 98.4 1.1E-05 3.8E-10 93.0 19.2 216 169-439 1119-1341(1630)
71 3sf4_A G-protein-signaling mod 98.4 1.7E-06 5.8E-11 88.8 11.8 203 67-288 51-295 (406)
72 3q15_A PSP28, response regulat 98.3 1E-05 3.5E-10 82.9 16.4 165 110-290 107-291 (378)
73 1qqe_A Vesicular transport pro 98.3 4E-06 1.4E-10 82.9 12.7 203 67-288 41-268 (292)
74 4g1t_A Interferon-induced prot 98.3 1.5E-05 5.2E-10 83.9 17.6 287 75-406 150-461 (472)
75 4i17_A Hypothetical protein; T 98.3 0.00012 4E-09 68.9 21.8 116 169-288 21-145 (228)
76 2ooe_A Cleavage stimulation fa 98.3 4.1E-05 1.4E-09 82.4 20.2 185 76-288 292-491 (530)
77 3mv2_B Coatomer subunit epsilo 98.3 0.00012 4E-09 72.2 21.5 180 67-288 49-239 (310)
78 2xm6_A Protein corresponding t 98.3 0.00015 5.1E-09 77.1 24.2 191 67-290 43-253 (490)
79 3urz_A Uncharacterized protein 98.2 3.9E-05 1.3E-09 71.4 17.3 170 107-303 7-198 (208)
80 4a1s_A PINS, partner of inscut 98.2 1.3E-05 4.4E-10 82.7 15.1 241 107-404 51-332 (411)
81 3mv2_B Coatomer subunit epsilo 98.2 6.6E-05 2.3E-09 74.0 17.6 166 101-288 97-281 (310)
82 2r5s_A Uncharacterized protein 98.2 6.8E-06 2.3E-10 74.4 9.7 77 209-287 93-171 (176)
83 2xm6_A Protein corresponding t 98.2 0.00068 2.3E-08 71.9 26.7 297 102-440 37-357 (490)
84 2vsy_A XCC0866; transferase, g 98.1 3.8E-05 1.3E-09 83.4 16.8 153 76-255 2-158 (568)
85 1qqe_A Vesicular transport pro 98.1 2.3E-05 8E-10 77.3 13.6 166 107-288 40-227 (292)
86 1xi4_A Clathrin heavy chain; a 98.1 0.00015 5.1E-09 83.8 21.6 144 103-286 1104-1247(1630)
87 3qky_A Outer membrane assembly 98.1 0.00012 4E-09 70.5 18.3 169 101-289 12-224 (261)
88 3ro2_A PINS homolog, G-protein 98.1 3.1E-06 1.1E-10 83.9 7.1 205 67-288 47-291 (338)
89 3sf4_A G-protein-signaling mod 98.1 2.6E-06 9E-11 87.4 6.2 205 67-288 91-335 (406)
90 3qou_A Protein YBBN; thioredox 98.1 1.2E-05 4.3E-10 79.1 10.5 165 102-288 115-283 (287)
91 3u3w_A Transcriptional activat 98.1 0.00021 7.2E-09 70.2 19.4 166 107-288 78-265 (293)
92 2vsy_A XCC0866; transferase, g 98.1 7.3E-05 2.5E-09 81.2 17.4 152 117-290 2-158 (568)
93 2ooe_A Cleavage stimulation fa 98.1 0.0004 1.4E-08 74.6 23.1 168 101-289 269-454 (530)
94 3ulq_A Response regulator aspa 98.1 6.1E-06 2.1E-10 84.7 8.3 202 67-288 147-367 (383)
95 1hh8_A P67PHOX, NCF-2, neutrop 98.1 0.00017 5.9E-09 66.7 17.6 127 107-254 9-150 (213)
96 2yhc_A BAMD, UPF0169 lipoprote 98.1 0.00034 1.2E-08 65.8 19.7 166 104-289 4-213 (225)
97 1hz4_A MALT regulatory protein 98.1 0.00012 4.1E-09 74.4 17.8 202 67-288 57-281 (373)
98 3rjv_A Putative SEL1 repeat pr 98.0 0.00062 2.1E-08 63.4 20.4 170 102-292 16-200 (212)
99 3qky_A Outer membrane assembly 98.0 6.2E-05 2.1E-09 72.6 13.7 170 67-254 19-224 (261)
100 2r5s_A Uncharacterized protein 98.0 4.5E-05 1.5E-09 68.8 11.2 113 170-288 21-136 (176)
101 3qou_A Protein YBBN; thioredox 97.9 0.00013 4.5E-09 71.7 15.0 140 169-312 131-272 (287)
102 1hz4_A MALT regulatory protein 97.9 0.00025 8.6E-09 72.0 17.4 204 67-288 97-321 (373)
103 3q15_A PSP28, response regulat 97.9 3.4E-05 1.2E-09 79.0 10.8 201 67-288 145-364 (378)
104 2qfc_A PLCR protein; TPR, HTH, 97.9 0.0006 2.1E-08 66.9 19.4 166 107-288 78-265 (293)
105 2pzi_A Probable serine/threoni 97.9 0.00018 6.2E-09 79.9 16.5 151 115-288 402-562 (681)
106 4ga2_A E3 SUMO-protein ligase 97.9 7.8E-05 2.7E-09 65.5 10.7 133 166-305 8-144 (150)
107 1hh8_A P67PHOX, NCF-2, neutrop 97.9 0.00037 1.3E-08 64.4 15.9 117 169-290 20-151 (213)
108 3gw4_A Uncharacterized protein 97.9 8.9E-05 3E-09 67.9 11.5 157 115-288 3-175 (203)
109 1na0_A Designed protein CTPR3; 97.8 0.00052 1.8E-08 56.6 14.7 81 170-252 24-104 (125)
110 3urz_A Uncharacterized protein 97.8 7.2E-05 2.5E-09 69.6 9.9 166 71-266 12-196 (208)
111 2pzi_A Probable serine/threoni 97.8 4.9E-05 1.7E-09 84.5 10.2 178 74-275 402-583 (681)
112 1a17_A Serine/threonine protei 97.8 0.00059 2E-08 59.9 15.5 94 107-218 16-109 (166)
113 4ga2_A E3 SUMO-protein ligase 97.8 5.6E-05 1.9E-09 66.4 8.4 140 112-274 5-148 (150)
114 1na0_A Designed protein CTPR3; 97.8 0.00068 2.3E-08 55.9 14.8 113 104-236 9-122 (125)
115 1p5q_A FKBP52, FK506-binding p 97.8 0.00014 4.7E-09 73.4 12.1 163 77-286 127-291 (336)
116 1a17_A Serine/threonine protei 97.8 0.00061 2.1E-08 59.7 15.0 117 169-288 27-145 (166)
117 2e2e_A Formate-dependent nitri 97.8 0.00024 8.3E-09 63.7 12.4 123 164-289 19-144 (177)
118 2fbn_A 70 kDa peptidylprolyl i 97.7 0.00019 6.5E-09 65.9 11.5 60 67-133 8-67 (198)
119 3e4b_A ALGK; tetratricopeptide 97.7 0.0016 5.5E-08 68.4 19.9 161 106-291 178-353 (452)
120 2ifu_A Gamma-SNAP; membrane fu 97.7 0.00025 8.7E-09 70.3 12.9 163 107-287 39-222 (307)
121 2e2e_A Formate-dependent nitri 97.7 0.00029 9.9E-09 63.2 12.1 98 103-218 43-143 (177)
122 2yhc_A BAMD, UPF0169 lipoprote 97.7 0.00031 1.1E-08 66.0 11.9 179 68-255 9-214 (225)
123 3gyz_A Chaperone protein IPGC; 97.6 0.00078 2.7E-08 59.2 13.3 82 169-253 50-132 (151)
124 3gw4_A Uncharacterized protein 97.6 0.00067 2.3E-08 61.9 13.3 120 168-288 5-135 (203)
125 2vyi_A SGTA protein; chaperone 97.6 0.0015 5.3E-08 54.2 14.6 114 107-240 15-129 (131)
126 2lni_A Stress-induced-phosphop 97.6 0.0012 4.2E-08 55.2 14.0 116 104-239 16-132 (133)
127 3u3w_A Transcriptional activat 97.6 0.0014 4.8E-08 64.2 16.2 162 69-252 81-264 (293)
128 2ifu_A Gamma-SNAP; membrane fu 97.6 0.00013 4.6E-09 72.3 8.7 193 67-282 40-254 (307)
129 2vyi_A SGTA protein; chaperone 97.6 0.0014 4.6E-08 54.5 13.4 102 169-274 26-128 (131)
130 4gco_A Protein STI-1; structur 97.5 0.00057 2E-08 57.9 10.3 94 192-288 15-109 (126)
131 2vgx_A Chaperone SYCD; alterna 97.5 0.00031 1.1E-08 61.4 8.9 97 189-288 20-117 (148)
132 3rjv_A Putative SEL1 repeat pr 97.5 0.0046 1.6E-07 57.4 17.5 143 121-289 3-158 (212)
133 2lni_A Stress-induced-phosphop 97.5 0.0014 4.7E-08 54.9 12.6 96 191-288 17-112 (133)
134 4gcn_A Protein STI-1; structur 97.5 0.0012 4.2E-08 55.8 12.2 107 191-301 9-122 (127)
135 3gyz_A Chaperone protein IPGC; 97.5 0.0019 6.5E-08 56.6 13.6 103 189-296 35-138 (151)
136 4gco_A Protein STI-1; structur 97.5 0.0029 9.9E-08 53.4 14.1 93 165-262 23-116 (126)
137 3e4b_A ALGK; tetratricopeptide 97.4 0.0058 2E-07 64.1 19.4 219 48-290 22-281 (452)
138 2kck_A TPR repeat; tetratricop 97.4 0.0009 3.1E-08 54.0 10.1 99 190-289 6-106 (112)
139 3q49_B STIP1 homology and U bo 97.4 0.0027 9.3E-08 53.6 13.4 99 187-288 6-105 (137)
140 2qfc_A PLCR protein; TPR, HTH, 97.4 0.0014 4.7E-08 64.3 13.0 164 67-252 79-264 (293)
141 2vgx_A Chaperone SYCD; alterna 97.4 0.0015 5.2E-08 56.9 11.8 94 107-218 24-117 (148)
142 1elr_A TPR2A-domain of HOP; HO 97.3 0.0041 1.4E-07 51.6 13.2 111 190-303 4-120 (131)
143 2c2l_A CHIP, carboxy terminus 97.3 0.0023 7.8E-08 62.4 13.2 96 104-218 4-100 (281)
144 1elr_A TPR2A-domain of HOP; HO 97.3 0.0018 6E-08 53.9 10.7 98 169-269 18-121 (131)
145 4gcn_A Protein STI-1; structur 97.3 0.0013 4.4E-08 55.7 9.8 94 169-265 22-121 (127)
146 1elw_A TPR1-domain of HOP; HOP 97.3 0.0065 2.2E-07 49.2 13.9 97 190-288 4-100 (118)
147 1p5q_A FKBP52, FK506-binding p 97.3 0.004 1.4E-07 62.5 14.9 123 169-314 161-283 (336)
148 3dra_A Protein farnesyltransfe 97.3 0.0053 1.8E-07 60.6 15.4 204 60-289 62-287 (306)
149 1elw_A TPR1-domain of HOP; HOP 97.2 0.0067 2.3E-07 49.1 13.7 85 169-255 18-102 (118)
150 3upv_A Heat shock protein STI1 97.2 0.0033 1.1E-07 52.5 11.9 96 190-288 4-100 (126)
151 1kt0_A FKBP51, 51 kDa FK506-bi 97.2 0.0013 4.4E-08 69.2 11.3 135 105-280 269-405 (457)
152 4e6h_A MRNA 3'-END-processing 97.2 0.0043 1.5E-07 68.3 15.7 208 70-305 350-584 (679)
153 2xcb_A PCRH, regulatory protei 97.2 0.0034 1.2E-07 53.9 12.0 93 107-218 21-114 (142)
154 2dba_A Smooth muscle cell asso 97.2 0.0055 1.9E-07 52.2 13.3 100 187-289 25-128 (148)
155 3sz7_A HSC70 cochaperone (SGT) 97.2 0.0037 1.3E-07 55.1 12.3 98 189-289 10-108 (164)
156 2xcb_A PCRH, regulatory protei 97.2 0.0035 1.2E-07 53.8 11.9 96 190-288 18-114 (142)
157 2kck_A TPR repeat; tetratricop 97.2 0.0027 9.1E-08 51.1 10.4 85 169-255 20-107 (112)
158 3q49_B STIP1 homology and U bo 97.2 0.011 3.8E-07 49.7 14.7 97 138-253 8-105 (137)
159 2dba_A Smooth muscle cell asso 97.2 0.013 4.3E-07 49.9 15.2 98 102-218 26-127 (148)
160 2fbn_A 70 kDa peptidylprolyl i 97.1 0.0075 2.6E-07 54.9 14.3 98 190-288 38-150 (198)
161 3upv_A Heat shock protein STI1 97.1 0.0056 1.9E-07 51.0 12.1 83 169-254 18-101 (126)
162 3n71_A Histone lysine methyltr 97.1 0.0014 4.9E-08 69.3 10.0 121 168-288 322-463 (490)
163 1wao_1 Serine/threonine protei 97.1 0.0032 1.1E-07 66.6 12.7 117 163-284 14-134 (477)
164 4b4t_Q 26S proteasome regulato 97.1 0.0026 9E-08 65.7 11.8 203 71-288 12-244 (434)
165 3ro3_A PINS homolog, G-protein 97.1 0.0031 1.1E-07 54.4 10.5 130 106-251 11-155 (164)
166 2c2l_A CHIP, carboxy terminus 97.1 0.013 4.3E-07 57.1 16.0 97 189-288 3-100 (281)
167 3ro3_A PINS homolog, G-protein 97.1 0.0028 9.4E-08 54.7 9.9 120 169-288 23-157 (164)
168 3sz7_A HSC70 cochaperone (SGT) 97.0 0.014 4.7E-07 51.3 14.4 94 107-218 14-107 (164)
169 1wao_1 Serine/threonine protei 97.0 0.0063 2.2E-07 64.3 14.1 117 112-249 14-134 (477)
170 3n71_A Histone lysine methyltr 97.0 0.001 3.4E-08 70.4 7.4 137 72-253 318-463 (490)
171 2xev_A YBGF; tetratricopeptide 97.0 0.011 3.7E-07 49.2 12.7 92 194-289 6-105 (129)
172 3k9i_A BH0479 protein; putativ 97.0 0.00097 3.3E-08 55.3 5.6 84 168-253 3-89 (117)
173 4f3v_A ESX-1 secretion system 96.9 0.0046 1.6E-07 60.0 10.5 134 103-255 101-238 (282)
174 4f3v_A ESX-1 secretion system 96.9 0.0055 1.9E-07 59.4 11.0 130 167-301 114-247 (282)
175 1hxi_A PEX5, peroxisome target 96.9 0.0031 1.1E-07 52.8 8.0 90 196-288 23-113 (121)
176 1hxi_A PEX5, peroxisome target 96.8 0.0093 3.2E-07 49.7 10.6 86 165-253 27-113 (121)
177 3dra_A Protein farnesyltransfe 96.8 0.44 1.5E-05 46.7 24.1 233 108-405 37-288 (306)
178 2xev_A YBGF; tetratricopeptide 96.7 0.028 9.5E-07 46.6 12.9 49 169-218 53-104 (129)
179 3k9i_A BH0479 protein; putativ 96.7 0.0022 7.5E-08 53.1 5.7 87 116-219 2-90 (117)
180 4b4t_Q 26S proteasome regulato 96.7 0.031 1.1E-06 57.5 15.7 161 112-288 12-203 (434)
181 1klx_A Cysteine rich protein B 96.6 0.052 1.8E-06 46.3 14.1 113 168-291 8-128 (138)
182 4e6h_A MRNA 3'-END-processing 96.6 0.11 3.8E-06 57.1 19.8 167 104-289 343-533 (679)
183 2kat_A Uncharacterized protein 96.4 0.012 4E-07 48.2 8.6 78 173-253 3-81 (115)
184 3rkv_A Putative peptidylprolyl 96.4 0.032 1.1E-06 48.7 11.9 97 191-288 12-125 (162)
185 1klx_A Cysteine rich protein B 96.4 0.1 3.5E-06 44.4 14.5 112 118-256 9-128 (138)
186 2hr2_A Hypothetical protein; a 96.3 0.036 1.2E-06 48.6 11.2 96 191-288 12-130 (159)
187 2if4_A ATFKBP42; FKBP-like, al 96.3 0.011 3.9E-07 59.2 9.1 145 105-288 180-327 (338)
188 3q7a_A Farnesyltransferase alp 96.2 0.08 2.7E-06 52.9 14.7 218 62-298 85-340 (349)
189 1ihg_A Cyclophilin 40; ppiase 96.2 0.038 1.3E-06 56.1 12.4 136 106-281 225-362 (370)
190 3rkv_A Putative peptidylprolyl 96.2 0.054 1.8E-06 47.2 12.0 112 105-253 12-125 (162)
191 1ihg_A Cyclophilin 40; ppiase 96.1 0.045 1.6E-06 55.5 12.5 85 225-312 273-358 (370)
192 1kt0_A FKBP51, 51 kDa FK506-bi 96.0 0.065 2.2E-06 56.1 13.6 83 225-310 317-400 (457)
193 2l6j_A TPR repeat-containing p 95.9 0.026 8.8E-07 45.3 8.0 64 189-254 3-67 (111)
194 2hr2_A Hypothetical protein; a 95.8 0.089 3.1E-06 46.1 11.3 100 169-268 25-150 (159)
195 2if4_A ATFKBP42; FKBP-like, al 95.7 0.02 7E-07 57.3 7.9 100 169-288 193-292 (338)
196 1zu2_A Mitochondrial import re 95.7 0.022 7.6E-07 49.9 6.9 98 164-266 11-130 (158)
197 3q7a_A Farnesyltransferase alp 95.7 2 6.7E-05 42.8 24.7 177 107-305 57-252 (349)
198 1na3_A Designed protein CTPR2; 95.5 0.11 3.7E-06 39.7 9.9 81 190-272 9-89 (91)
199 3qww_A SET and MYND domain-con 95.4 0.033 1.1E-06 57.7 8.5 84 205-288 313-410 (433)
200 3qww_A SET and MYND domain-con 95.4 0.081 2.8E-06 54.8 11.4 85 168-252 311-409 (433)
201 2l6j_A TPR repeat-containing p 95.4 0.051 1.7E-06 43.4 8.0 76 169-247 18-100 (111)
202 3ma5_A Tetratricopeptide repea 95.3 0.074 2.5E-06 42.3 8.4 64 188-253 5-69 (100)
203 3qwp_A SET and MYND domain-con 95.3 0.18 6.1E-06 52.2 13.5 104 195-298 292-412 (429)
204 2kat_A Uncharacterized protein 95.1 0.11 3.6E-06 42.2 9.1 79 207-288 2-81 (115)
205 3dss_A Geranylgeranyl transfer 94.9 0.66 2.3E-05 45.9 15.6 151 120-288 90-266 (331)
206 3qwp_A SET and MYND domain-con 94.6 0.067 2.3E-06 55.4 7.9 85 168-252 300-398 (429)
207 3ly7_A Transcriptional activat 94.4 0.43 1.5E-05 47.8 12.9 153 136-304 191-352 (372)
208 1na3_A Designed protein CTPR2; 94.4 0.29 9.9E-06 37.1 9.6 67 169-238 23-90 (91)
209 3ma5_A Tetratricopeptide repea 94.2 0.22 7.4E-06 39.4 8.6 81 225-306 7-88 (100)
210 1pc2_A Mitochondria fission pr 94.0 0.43 1.5E-05 41.2 10.4 91 160-253 3-99 (152)
211 1dce_A Protein (RAB geranylger 93.9 2.8 9.6E-05 44.8 19.2 180 116-307 41-238 (567)
212 3dss_A Geranylgeranyl transfer 93.8 0.55 1.9E-05 46.5 12.3 180 79-288 90-303 (331)
213 3mkq_A Coatomer beta'-subunit; 93.8 0.64 2.2E-05 51.9 14.5 97 169-286 666-762 (814)
214 1dce_A Protein (RAB geranylger 93.5 0.63 2.2E-05 50.0 13.1 174 75-275 40-241 (567)
215 2uy1_A Cleavage stimulation fa 93.2 4.1 0.00014 42.7 18.9 33 101-133 210-242 (493)
216 3mkq_B Coatomer subunit alpha; 93.1 1.6 5.4E-05 38.7 12.8 98 168-286 18-115 (177)
217 3ly7_A Transcriptional activat 92.5 1.9 6.6E-05 43.0 13.9 151 100-264 190-347 (372)
218 2kc7_A BFR218_protein; tetratr 92.5 0.3 1E-05 38.0 6.8 56 197-254 7-64 (99)
219 1zu2_A Mitochondrial import re 92.4 0.36 1.2E-05 42.1 7.5 109 116-234 14-133 (158)
220 1wy6_A Hypothetical protein ST 91.2 6 0.00021 33.2 13.7 120 169-292 21-157 (172)
221 3u64_A Protein TP_0956; tetrat 90.2 2.3 7.9E-05 40.9 11.3 106 169-286 177-295 (301)
222 3bee_A Putative YFRE protein; 89.0 1.8 6.3E-05 33.7 8.2 67 187-255 3-73 (93)
223 2kc7_A BFR218_protein; tetratr 89.0 1.4 4.8E-05 33.9 7.7 51 168-219 13-64 (99)
224 2uy1_A Cleavage stimulation fa 88.5 3.1 0.00011 43.6 12.1 111 169-288 300-412 (493)
225 1pc2_A Mitochondria fission pr 87.9 2.8 9.6E-05 36.1 9.2 89 119-224 13-103 (152)
226 2v5f_A Prolyl 4-hydroxylase su 86.9 2.8 9.6E-05 33.1 8.3 66 188-253 3-74 (104)
227 3mkq_A Coatomer beta'-subunit; 86.7 7.9 0.00027 42.8 14.9 102 113-251 661-762 (814)
228 1wy6_A Hypothetical protein ST 85.1 16 0.00055 30.7 14.6 141 107-257 8-157 (172)
229 3mkq_B Coatomer subunit alpha; 84.4 21 0.00071 31.4 16.2 130 111-286 12-141 (177)
230 3u64_A Protein TP_0956; tetrat 83.5 5.8 0.0002 38.1 9.8 94 206-301 179-283 (301)
231 2v5f_A Prolyl 4-hydroxylase su 82.3 8 0.00027 30.4 9.1 70 226-297 6-81 (104)
232 2ff4_A Probable regulatory pro 78.3 6.3 0.00022 39.8 8.8 76 229-305 175-255 (388)
233 2ff4_A Probable regulatory pro 76.8 12 0.0004 37.8 10.3 70 192-262 173-247 (388)
234 4gns_B Protein CSD3, chitin bi 75.2 25 0.00084 38.7 12.8 128 107-251 251-397 (754)
235 4h7y_A Dual specificity protei 74.6 40 0.0014 28.8 11.6 106 188-295 11-129 (161)
236 3bee_A Putative YFRE protein; 74.0 28 0.00095 26.7 10.8 62 170-234 24-85 (93)
237 1nzn_A CGI-135 protein, fissio 72.7 13 0.00046 30.6 7.7 77 173-252 19-101 (126)
238 1v54_E Cytochrome C oxidase po 71.1 24 0.00081 27.9 8.1 60 243-303 28-87 (109)
239 1v54_E Cytochrome C oxidase po 68.2 22 0.00077 28.0 7.5 61 172-233 27-87 (109)
240 1nzn_A CGI-135 protein, fissio 62.2 33 0.0011 28.3 8.0 104 196-303 7-115 (126)
241 1k1a_A B-cell lymphoma 3-encod 59.8 19 0.00065 32.6 7.1 145 109-279 11-166 (241)
242 2y69_E Cytochrome C oxidase su 59.3 46 0.0016 27.8 8.1 60 243-303 71-130 (152)
243 3lvg_A Clathrin heavy chain 1; 53.1 8.1 0.00028 40.0 3.3 197 33-245 82-324 (624)
244 2y69_E Cytochrome C oxidase su 52.5 61 0.0021 27.1 7.8 60 173-233 71-130 (152)
245 4fhn_B Nucleoporin NUP120; pro 49.4 2.7E+02 0.0092 32.2 16.0 118 193-312 902-1037(1139)
246 4b4t_R RPN7, 26S proteasome re 48.9 1E+02 0.0035 31.2 11.1 127 170-296 109-244 (429)
247 4gns_B Protein CSD3, chitin bi 46.1 1.3E+02 0.0045 33.0 11.8 112 171-286 265-397 (754)
248 2p58_C Putative type III secre 45.9 91 0.0031 24.5 7.4 78 170-255 22-99 (116)
249 1y8m_A FIS1; mitochondria, unk 45.6 51 0.0017 27.8 6.5 23 231-253 83-105 (144)
250 2d2s_A Exocyst complex compone 43.9 1.3E+02 0.0045 27.6 9.9 90 196-288 24-119 (235)
251 4b4t_R RPN7, 26S proteasome re 42.1 1.1E+02 0.0039 30.8 10.1 85 167-253 143-236 (429)
252 3eu9_A Huntingtin-interacting 40.9 5.7 0.0002 36.1 0.0 44 38-81 11-57 (240)
253 3o48_A Mitochondria fission 1 40.8 41 0.0014 28.0 5.1 22 231-252 84-105 (134)
254 2nsz_A Programmed cell death p 40.3 85 0.0029 25.8 7.2 66 192-258 9-76 (129)
255 2uwj_G Type III export protein 40.3 88 0.003 24.6 6.5 78 170-255 21-98 (115)
256 3c1d_A Protein ORAA, regulator 39.6 1.5E+02 0.0052 25.1 9.1 100 170-274 45-144 (159)
257 4h7y_A Dual specificity protei 39.2 77 0.0026 27.1 6.6 54 204-258 74-127 (161)
258 3lvg_A Clathrin heavy chain 1; 39.1 0.49 1.7E-05 48.8 -8.1 83 67-163 58-140 (624)
259 1zbp_A Hypothetical protein VP 38.7 55 0.0019 30.9 6.3 110 166-288 8-128 (273)
260 3txn_A 26S proteasome regulato 38.6 3.1E+02 0.011 27.3 16.2 170 104-288 19-209 (394)
261 3kea_A K1L; tropism, ANK repea 38.3 33 0.0011 32.4 5.1 192 31-262 26-225 (285)
262 2nsz_A Programmed cell death p 38.2 1.2E+02 0.004 24.9 7.8 84 227-311 9-94 (129)
263 3ljn_A Hypothetical protein; a 38.2 6.3 0.00022 38.9 -0.2 216 33-284 17-265 (364)
264 3eiq_C Programmed cell death p 38.1 3E+02 0.01 27.0 12.2 85 227-312 219-305 (358)
265 4b4t_P 26S proteasome regulato 34.7 3.7E+02 0.013 27.1 15.4 176 101-288 53-246 (445)
266 2p58_C Putative type III secre 34.2 1.1E+02 0.0038 24.1 6.2 79 205-291 22-100 (116)
267 4a1g_A Mitotic checkpoint seri 34.2 70 0.0024 27.2 5.8 53 243-295 83-136 (152)
268 3esl_A Checkpoint serine/threo 33.7 1.5E+02 0.0052 26.5 8.1 53 206-258 95-148 (202)
269 1wdy_A 2-5A-dependent ribonucl 32.7 41 0.0014 31.0 4.7 117 108-259 6-132 (285)
270 2ion_A PDCD4, programmed cell 32.4 78 0.0027 26.9 5.9 68 192-260 11-80 (152)
271 2wvi_A Mitotic checkpoint seri 32.0 79 0.0027 27.3 5.8 51 244-294 79-130 (164)
272 3hra_A Ankyrin repeat family p 31.6 45 0.0015 29.0 4.5 154 111-294 9-172 (201)
273 1wdy_A 2-5A-dependent ribonucl 31.2 31 0.001 32.0 3.5 48 201-248 190-239 (285)
274 2ion_A PDCD4, programmed cell 31.1 1.1E+02 0.0037 26.0 6.6 85 227-312 11-97 (152)
275 3twr_A Tankyrase-2; ankyrin re 30.1 53 0.0018 27.5 4.6 15 113-127 14-28 (165)
276 2uwj_G Type III export protein 29.7 1E+02 0.0036 24.2 5.4 79 205-291 21-99 (115)
277 4fhn_B Nucleoporin NUP120; pro 28.8 3.4E+02 0.012 31.3 12.4 115 189-306 841-982 (1139)
278 3v31_A Ankyrin repeat family A 28.4 1.4E+02 0.0047 24.8 7.0 144 111-288 7-160 (167)
279 2fu4_A Ferric uptake regulatio 28.1 1.3E+02 0.0043 22.0 5.9 61 250-311 7-68 (83)
280 3pvs_A Replication-associated 28.0 2.8E+02 0.0094 28.1 10.2 123 170-309 166-304 (447)
281 3bu8_A Telomeric repeat-bindin 27.9 3.3E+02 0.011 24.6 9.1 103 115-218 27-142 (235)
282 3aji_A 26S proteasome non-ATPa 27.6 35 0.0012 30.5 3.1 119 110-259 9-133 (231)
283 2rfa_A Transient receptor pote 27.0 98 0.0034 27.5 6.1 151 110-286 40-220 (232)
284 3b7b_A Euchromatic histone-lys 27.0 11 0.00039 34.2 -0.5 105 176-288 125-235 (237)
285 2fe3_A Peroxide operon regulat 26.7 1.7E+02 0.0059 24.2 7.1 62 249-311 11-72 (145)
286 1wty_A Hypothetical protein TT 25.6 2.5E+02 0.0087 22.3 8.2 76 170-252 3-79 (119)
287 3esl_A Checkpoint serine/threo 25.1 3.4E+02 0.012 24.1 8.9 76 98-189 71-149 (202)
288 3ffl_A Anaphase-promoting comp 25.0 2.6E+02 0.0089 24.1 7.8 27 266-292 128-154 (167)
289 3txn_A 26S proteasome regulato 24.7 2.2E+02 0.0075 28.4 8.5 103 67-182 103-208 (394)
290 4aez_C MAD3, mitotic spindle c 24.7 1.1E+02 0.0038 27.8 5.7 53 242-294 131-184 (223)
291 2rfa_A Transient receptor pote 24.6 1.1E+02 0.0036 27.2 5.8 155 110-293 6-184 (232)
292 2dzn_A Probable 26S proteasome 24.3 61 0.0021 28.7 4.1 119 110-259 5-134 (228)
293 2fu4_A Ferric uptake regulatio 24.1 1.9E+02 0.0064 21.0 6.2 63 213-276 5-68 (83)
294 3ljn_A Hypothetical protein; a 23.8 87 0.003 30.4 5.4 146 108-284 21-194 (364)
295 3t8k_A Uncharacterized protein 23.6 1.1E+02 0.0037 26.6 5.5 56 170-225 50-109 (186)
296 2keb_A DNA polymerase subunit 23.2 2.6E+02 0.009 21.7 7.1 61 243-305 27-92 (101)
297 1mzb_A Ferric uptake regulatio 22.6 1.7E+02 0.0058 23.9 6.2 62 250-312 8-70 (136)
298 2xig_A Ferric uptake regulatio 22.4 1.9E+02 0.0064 24.2 6.5 62 249-311 16-77 (150)
299 3eu9_A Huntingtin-interacting 22.1 81 0.0028 28.0 4.5 16 110-125 45-60 (240)
300 2r9g_A AAA ATPase, central reg 21.7 4.1E+02 0.014 23.6 8.5 92 196-288 17-116 (204)
301 3f6q_A Integrin-linked protein 21.7 1.2E+02 0.004 25.7 5.3 12 116-127 14-25 (179)
302 2fe3_A Peroxide operon regulat 21.6 2.7E+02 0.0094 22.9 7.4 64 212-276 9-72 (145)
303 2keb_A DNA polymerase subunit 21.6 2.2E+02 0.0076 22.1 5.8 32 173-204 27-58 (101)
304 3e3v_A Regulatory protein RECX 21.5 3.9E+02 0.013 23.0 9.5 115 170-287 48-164 (177)
305 3mv2_A Coatomer subunit alpha; 20.5 3.5E+02 0.012 26.0 8.5 69 240-308 185-256 (325)
306 1awc_B Protein (GA binding pro 20.2 2E+02 0.0067 23.4 6.3 112 108-247 3-119 (153)
307 3qil_A Clathrin heavy chain 1; 20.1 40 0.0014 27.5 1.5 62 73-152 16-77 (125)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.1e-106 Score=871.23 Aligned_cols=486 Identities=72% Similarity=1.249 Sum_probs=459.9
Q ss_pred HHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHH
Q 007684 93 KSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLK 172 (593)
Q Consensus 93 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~ 172 (593)
+.+++.....|+.+++.+|++|++.|++++|+++|++|.+.|++||.+|||+||++|+..+. .....+.|.++
T Consensus 15 ~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~-------~~~~~~~~~l~ 87 (501)
T 4g26_A 15 KAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEA-------ATESSPNPGLS 87 (501)
T ss_dssp ---------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCC-------CSSSSCCHHHH
T ss_pred HHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCc-------hhhhhhcchHH
Confidence 33444445567778999999999999999999999999999999999999999999998742 23345568899
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 007684 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMG 252 (593)
Q Consensus 173 ~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~ 252 (593)
+|+++|++|.+.|+.||..|||+||++|++.|++++|.++|++|.+.|+.||..|||++|.+||+.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCC
Q 007684 253 ESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGG 332 (593)
Q Consensus 253 ~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~ 332 (593)
+.|+.||..||++||.+|++.|+.++|.++|++|++.++.|+..||++|+.||++.++...+...|+...+...+...|+
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~a~~~g~~~~d~~~~~~~~~~~g~ 247 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEVATKTGVKKWDVKKIRDAVVSGGG 247 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHHHHTCCBSCCCHHHHHHHHHHHTS
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCcchhhhhhhhhhhhhhhhHhccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCceEEEEecccCCCCcCcccccccccCCCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhcCCcCeee
Q 007684 333 GWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVI 412 (593)
Q Consensus 333 ~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~~~d~vi 412 (593)
++|+++|++.++|.+..+.|+..|+|..|+..++.++++|.+.+.+...|..++..++..+.++.|++|+++++|||+||
T Consensus 248 ~~~~~~~~~~~~w~v~~t~v~~~G~C~~c~~~L~~i~l~~~e~~~l~~~i~~~~~~~~~~~~~~~F~~~l~~~~p~d~vI 327 (501)
T 4g26_A 248 GWHGQGWLGTGKWNVKRTEMDENGVCKCCKEKLVCIDINPVETETFAASLTRLACEREVKANFNQFQEWLERHGPFDAVI 327 (501)
T ss_dssp SCCCSCCCBCSCEEEEEECBCTTSBBTTTCCBCCCCCCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTSCCCSEEE
T ss_pred ccccccccccCceeEEeeecccCCCccchhhhhccccCCHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhcCCchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccceecccCCCCChhhHHHHHHHHHhhCCCCCceEEEecCCCcCCCCCCCcchHHHHHHHHhCCcEEeCCCCCCChHHH
Q 007684 413 DGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYW 492 (593)
Q Consensus 413 dg~nv~~~~~~~~~~~~l~~vv~~l~~~~~~~~~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~DD~~~ 492 (593)
||+|||||+++++++.|++.|++.+++..+.++.|||++|++|+.++.+..+++++++++|++.+.+|+||++|||||||
T Consensus 328 DG~NV~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~s~DD~~~ 407 (501)
T 4g26_A 328 DGANMGLVNQRSFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNGGPATYPKNRALLEKWKNAGALYATPPGSNDDWYW 407 (501)
T ss_dssp EHHHHHHTTCSSCCHHHHHHHHHHHHHHSTTCCCCEEEEEHHHHTSGGGSSHHHHHHHHHHHHTTCEEEECTTCCHHHHH
T ss_pred ccchhhccccccccHHHHHHHHHHHHHHhhccCCcEEEeehhhhcccccCCHHHHHHHHHHHhcCeEEeCCCCCCchHHH
Confidence 99999999999999999999999999988889999999999999998888999999999999999999999999999999
Q ss_pred HHHHHhCCcEEEecchhhccccccccccchhhhhcccEeEEEeec-CceeeeCCCCCccceeccCCCceEecccCCCCCC
Q 007684 493 LYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSR-DGLNLLMPPPYSIVIQESENGSWHVPVITGDDLE 571 (593)
Q Consensus 493 lyaa~~~~~~~vs~D~~rdh~~~~~~~~~f~~w~~~hq~~~~~~~-~~~~~~~p~~~~~~~q~~~~~~wh~p~~~~~~~~ 571 (593)
|||||+++|+|||||+||||+|+|+++++|+|||++|||+|++++ +|++|++|+||+++||++++|+|||||++++++|
T Consensus 408 lyAal~~~~~~vsnD~mRdH~f~l~~~~~F~rW~~~hq~~~~~~~~~~~~~~~p~~~~~~~q~~~~~~WHiP~~~~~~~~ 487 (501)
T 4g26_A 408 LYAAVSCKCLLVTNDEMRDHLFQLLGNSFFPRWKEKHQVRISVTREDGLKLNMPPPYSIVIQESEDGTWHVPMSVEDDLQ 487 (501)
T ss_dssp HHHHHHHTCEEECCCCCCSGGGGGGTTTHHHHHHHHHEEEEEEETTTEEEEECCCSSCCSCEECTTSCEEEEBCCSCTTT
T ss_pred HHHHHccCCEEEeccccccchhccCCcHHHHHHHhcCeEEEEecCCCCceeccCCCCceeeeecCCCceEecccCCCCCC
Confidence 999999999999999999999999999999999999999999985 4799999999999999999899999999999999
Q ss_pred CCCceEEEEeCCcc
Q 007684 572 APRQWLCATRARVK 585 (593)
Q Consensus 572 ~~~~wlc~~~~~~~ 585 (593)
+|++|||++|.+++
T Consensus 488 ~~~~WlC~~r~~~~ 501 (501)
T 4g26_A 488 TSRQWLCAKRSKTP 501 (501)
T ss_dssp SCCCEEEEEECC--
T ss_pred CCCeeEeeccCCCC
Confidence 99999999998764
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.3e-29 Score=272.15 Aligned_cols=204 Identities=12% Similarity=0.075 Sum_probs=177.5
Q ss_pred CCChhhHHhhcCCccccch--HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCC------
Q 007684 48 FTKPITDIKQNRFSADLTT--GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGD------ 119 (593)
Q Consensus 48 ~~~~~~~m~~~g~~~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------ 119 (593)
+..+...+.++++...... +.+|++|++.|++++|.++|++|. +.+..++..+||+||.+|++.+.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~------~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~ 82 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEAR------RNGVQLSQYHYNVLLYVCSLAEAATESSP 82 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHH------HHTCCCCHHHHHHHHHHHTTCCCCSSSSC
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH------HcCCCCCHhHHHHHHHHHHhCCchhhhhh
Confidence 4566677777777654333 888999999999999999996665 46778888899999999997764
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007684 120 ---VFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSV 196 (593)
Q Consensus 120 ---~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~l 196 (593)
++.|.++|++|.+.|+.||..|||+||.+|++. |++++|.++|++|.+.|+.||..|||+|
T Consensus 83 ~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~----------------g~~~~A~~l~~~M~~~g~~Pd~~tyn~l 146 (501)
T 4g26_A 83 NPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAK----------------DDPEMAFDMVKQMKAFGIQPRLRSYGPA 146 (501)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH----------------TCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc----------------CCHHHHHHHHHHHHHcCCCCccceehHH
Confidence 789999999999999999999999999999997 6999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007684 197 ARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA 273 (593)
Q Consensus 197 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~ 273 (593)
|.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|+.++|++++++|.+.|+.|+..||+.++..++..
T Consensus 147 I~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 147 LFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998764
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.81 E-value=7.6e-20 Score=201.07 Aligned_cols=345 Identities=9% Similarity=-0.058 Sum_probs=267.1
Q ss_pred ccCCCcccHHHHHHHHHHh-----CCChhhHHhhcCCccccch-HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCC
Q 007684 29 MHQSNCHTYRSLLCWHMHS-----FTKPITDIKQNRFSADLTT-GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRES 102 (593)
Q Consensus 29 ~~~pd~~~~~~ll~~~~~~-----~~~~~~~m~~~g~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 102 (593)
.+.+++..|+.++..+... +..++..|. +..|+..+ ..++.+|.+.|++++|...+..+.. ...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~ 148 (597)
T 2xpi_A 79 DSLSREDYLRLWRHDALMQQQYKCAAFVGEKVL--DITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--------YNR 148 (597)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--------GGT
T ss_pred chHHHHHHHHHHHHHHHHccCchHHHHHHHHHH--hhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--------ccc
Confidence 3456788899999988855 666777776 35577777 8999999999999999999966541 145
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHH-HC--------------CCCCCHHHHHHHHHHHHccCCCCCCC--------
Q 007684 103 PEGVLRHKLDMCSKRGDVFEALRLYDDAR-SN--------------GITLSQHHYNVLLYVCSCKCGSESSE-------- 159 (593)
Q Consensus 103 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~--------------g~~p~~~ty~~ll~~~~~~~~~~~~~-------- 159 (593)
+..+++.++.+|.+.|++++|+++|+++. .. |..++..+|+.+..+|.+.+..+.+.
T Consensus 149 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 228 (597)
T 2xpi_A 149 SSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALM 228 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56789999999999999999999999532 22 33446889999999988876543210
Q ss_pred ------------------------------------------------CCCCcccccccHHHHHHHHHHHHhCCCCCCHH
Q 007684 160 ------------------------------------------------NGDRENDSNLGLKRGFEIFQQMITDKVDPNEA 191 (593)
Q Consensus 160 ------------------------------------------------~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ 191 (593)
.+...+.+.|++++|.++|++|.+. +++..
T Consensus 229 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~ 306 (597)
T 2xpi_A 229 VDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSD 306 (597)
T ss_dssp HCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHH
T ss_pred hCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHH
Confidence 0145677889999999999998765 58999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007684 192 TFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSV 271 (593)
Q Consensus 192 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~ 271 (593)
+++.++.+|.+.|++++|.++|++|.+.+. .+..+|+.++.+|.+.|+.++|.+++++|.+.. ..+..+++.++.+|.
T Consensus 307 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 384 (597)
T 2xpi_A 307 LLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYL 384 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHH
Confidence 999999999999999999999999987553 467899999999999999999999999998543 346788999999999
Q ss_pred hcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCcccccccccCCceEEEEec
Q 007684 272 DAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQ 351 (593)
Q Consensus 272 ~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~ 351 (593)
+.|++++|.++|+++.+.. ..+..++..+...|...+..+.+. .+.+.+.+.+. .+.. +...+
T Consensus 385 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~------~~~~~~~~~~~-~~~~---------~~~~l 447 (597)
T 2xpi_A 385 CVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAI------SAYTTAARLFQ-GTHL---------PYLFL 447 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH------HHHHHHHHTTT-TCSH---------HHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH------HHHHHHHHhCc-cchH---------HHHHH
Confidence 9999999999999998732 235668888888887766544332 33333332221 1111 22345
Q ss_pred ccCCCCcCcccccccccC----CCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHh
Q 007684 352 IDENGVCCSCNERLVCID----IDPRETENFASSLSNLACQREVRSDFNKFQEWLGR 404 (593)
Q Consensus 352 i~~~g~c~~~~~al~~~~----l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~ 404 (593)
...+.+++..++|++.++ +.|.+...|..++..|...|+.++|++.|+++++.
T Consensus 448 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 448 GMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 556667778888888777 55667888999999999999999999999999986
No 4
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=99.79 E-value=5.8e-20 Score=168.39 Aligned_cols=127 Identities=22% Similarity=0.241 Sum_probs=105.4
Q ss_pred CCcCeeeeccceecccCC--CCChhhHHHHHHHHHhhCCCCCc-eEEEecCCCcCC-CCCCCcchHHHHHHHHhCCcEEe
Q 007684 406 GPFDAVIDGANVGLVNQH--NFSFYQLNTVVNRLRQMSPSKRM-PLVILHKGRVSG-GPAQIPKNKKLLDIWRDGGALYT 481 (593)
Q Consensus 406 ~~~d~vidg~nv~~~~~~--~~~~~~l~~vv~~l~~~~~~~~~-~lv~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 481 (593)
..--+||||+|||++.++ .|+..+|..+|++|.+ .|.. ++|++++.+... ++.....+++++++|.+.+.+++
T Consensus 23 ~lR~IVIDGsNVA~~~g~~~~Fs~rgI~~aV~yF~~---RGh~~V~VfvP~~r~~~~~~~~~~~d~~~L~~L~k~g~L~~ 99 (223)
T 3v33_A 23 DLRPVVIDGSNVAMSHGNKEVFSCRGILLAVNWFLE---RGHTDITVFVPSWRKEQPRPDVPITDQHILRELEKKKILVF 99 (223)
T ss_dssp CBCCEEEEHHHHHHHSSSTTSEEHHHHHHHHHHHHT---TTCCCEEEEEEGGGGSCCCTTSCEESTHHHHHHHHTTCEEE
T ss_pred cCCeEEEeCHHHHhhhCCCCCcCHHHHHHHHHHHHH---cCCCceEEEechhhhccccccCCCCcHHHHHHHHHCCCEEE
Confidence 345789999999999876 5788899999999998 3555 567777666543 23334567899999999999999
Q ss_pred CCCC--------CCChHHHHHHHHhCCcEEEecchhhccccccccccchhhhhcccEeEEEeecC
Q 007684 482 TPPG--------SNDDWYWLYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRD 538 (593)
Q Consensus 482 ~~~~--------s~DD~~~lyaa~~~~~~~vs~D~~rdh~~~~~~~~~f~~w~~~hq~~~~~~~~ 538 (593)
||.+ ++||+|||++|...++.|||||+||||.. ...-|.+|.+.|++.|+|..+
T Consensus 100 TPs~~v~G~r~~sydD~~iL~~A~~~~g~IVSND~yRD~~~---e~p~~k~~Ie~rlI~ytFv~D 161 (223)
T 3v33_A 100 TPSRRVGGKRVVCYDDRFIVKLAYESDGIVVSNDTYRDLQG---ERQEWKRFIEERLLMYSFVND 161 (223)
T ss_dssp ECEEEETTEEEECCHHHHHHHHHHHTTCEEECSCCCHHHHT---TCHHHHHHHHHHEECCEEETT
T ss_pred CCCCCcCCccccccchHHHHHHHHHcCCEEEeCccHHHHHh---hCHHHHHHHHhCeeeEEEECC
Confidence 9999 89999999999999999999999999985 233588888999999999743
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.78 E-value=1.1e-18 Score=191.86 Aligned_cols=272 Identities=9% Similarity=-0.032 Sum_probs=178.0
Q ss_pred cccch-HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH
Q 007684 62 ADLTT-GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQH 140 (593)
Q Consensus 62 ~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 140 (593)
++..+ +.++.+|.+.|++++|...|.+++ ...+.+..+++.++.+|.+.|++++|..+|+++.+.. +.+..
T Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 374 (597)
T 2xpi_A 303 KSSDLLLCKADTLFVRSRFIDVLAITTKIL-------EIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAV 374 (597)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------HHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHH-------HcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHH
Confidence 44455 777777777777777777775554 2223344457777777777777777777777776442 33566
Q ss_pred HHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007684 141 HYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG 220 (593)
Q Consensus 141 ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g 220 (593)
+|+.+..+|.+. |++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|++|.+.+
T Consensus 375 ~~~~l~~~~~~~----------------g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 437 (597)
T 2xpi_A 375 TWLAVGIYYLCV----------------NKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF 437 (597)
T ss_dssp HHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh----------------ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 777766666665 47777777777776643 3456677777777777777777777777776643
Q ss_pred CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----cCCCC--
Q 007684 221 IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL----VRQVS-- 294 (593)
Q Consensus 221 ~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~----~~~~~-- 294 (593)
- .+..+|+.++.+|.+.|++++|.++|++|.+..- .+..+|+.++.+|.+.|++++|.++|+++.+. +..|+
T Consensus 438 ~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~ 515 (597)
T 2xpi_A 438 Q-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPW 515 (597)
T ss_dssp T-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGG
T ss_pred c-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhH
Confidence 2 3566777777777777777777777777765432 35666777777777777777777777777664 44555
Q ss_pred HHHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCcccccccccCCceEEEEecccCCCCcCcccccccccCCCHHH
Q 007684 295 ESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRE 374 (593)
Q Consensus 295 ~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~l~~~~ 374 (593)
..++..+...|...+..+.+...+ +.+. .+.|.+
T Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~------~~~~----------------------------------------~~~p~~ 549 (597)
T 2xpi_A 516 AATWANLGHAYRKLKMYDAAIDAL------NQGL----------------------------------------LLSTND 549 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHH------HHHH----------------------------------------HHSSCC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHH------HHHH----------------------------------------HhCCCC
Confidence 456666666665544333221111 1111 123445
Q ss_pred HHHHHHHHHHHhhhhhhHHhHHHHHHHHHhcC
Q 007684 375 TENFASSLSNLACQREVRSDFNKFQEWLGRHG 406 (593)
Q Consensus 375 ~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~ 406 (593)
...|..+...|...|++++|.+.|+++++..+
T Consensus 550 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 550 ANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 67788888888888888888888888887654
No 6
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.77 E-value=3.6e-19 Score=196.70 Aligned_cols=152 Identities=14% Similarity=0.121 Sum_probs=129.8
Q ss_pred CHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 007684 138 SQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMIT---DKVDPNEATFTSVARLAVAKEDPEMAFDLVK 214 (593)
Q Consensus 138 ~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~---~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~ 214 (593)
-..|||+||++|++. |++++|.++|++|.+ .|+.||.+|||+||.+||+.|++++|.++|+
T Consensus 126 ~~~TynaLIdglcK~----------------G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~ 189 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLT----------------DQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLF 189 (1134)
T ss_dssp HHHHHHHHHHHHHHH----------------TCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC----------------CCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 457999999999987 699999999988764 5899999999999999999999999999999
Q ss_pred HHHhCCCCCCcccHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCC
Q 007684 215 QMKSFGIPPKLRSYGPALFGFCKLGNT-DKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293 (593)
Q Consensus 215 ~m~~~g~~p~~~ty~~li~~~~~~g~~-~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~ 293 (593)
+|++.|+.||..|||++|.++|+.|+. ++|.++|++|.+.|+.||..+|++++.++.+. .+++.++++ .-+..|
T Consensus 190 eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p 264 (1134)
T 3spa_A 190 MVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSL 264 (1134)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCC
T ss_pred HHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCC
Confidence 999999999999999999999999985 78999999999999999999999999876554 444444555 334444
Q ss_pred C------HHHHHHHHHHHhcchh
Q 007684 294 S------ESTFKIIEDWFDSVDA 310 (593)
Q Consensus 294 ~------~~t~~~l~~~~~~~~~ 310 (593)
+ ..|...|.+.|...+.
T Consensus 265 ~~~~~~~~~t~~LL~dl~s~d~~ 287 (1134)
T 3spa_A 265 PPQLPPPVNTSKLLRDVYAKDGR 287 (1134)
T ss_dssp CCCCCCCCCCCTTTHHHHCCCSC
T ss_pred CCCCcccccchHHHHHHHccCCC
Confidence 4 4566778888876553
No 7
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.76 E-value=6.5e-19 Score=194.69 Aligned_cols=150 Identities=9% Similarity=-0.001 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHH
Q 007684 104 EGVLRHKLDMCSKRGDVFEALRLYDDARS---NGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQ 180 (593)
Q Consensus 104 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~ 180 (593)
..+||+||++||++|++++|.++|++|.+ .|+.||++|||+||.+|++. |++++|.++|++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~----------------G~~~eA~~Lf~e 190 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQ----------------GAFKELVYVLFM 190 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHH----------------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhC----------------CCHHHHHHHHHH
Confidence 34699999999999999999999998874 48999999999999999886 699999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 007684 181 MITDKVDPNEATFTSVARLAVAKEDP-EMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE 259 (593)
Q Consensus 181 M~~~g~~p~~~ty~~li~~~~~~g~~-~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 259 (593)
|++.|+.||.+|||+||.++++.|+. ++|.++|++|.+.|+.||..+|++++.++.+.+-++. .+++ ..++.|+
T Consensus 191 M~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~----Vrkv-~P~f~p~ 265 (1134)
T 3spa_A 191 VKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKA----VHKV-KPTFSLP 265 (1134)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHH----HGGG-CCCCCCC
T ss_pred HHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHH----HHHh-CcccCCC
Confidence 99999999999999999999999985 7899999999999999999999999988777644333 3333 3455554
Q ss_pred ------HHHHHHHHHHHHhcC
Q 007684 260 ------EPELSALLKLSVDAK 274 (593)
Q Consensus 260 ------~~t~~~Ll~~~~~~g 274 (593)
..|...|.+.|.+.+
T Consensus 266 ~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 266 PQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp CCCCCCCCCCTTTHHHHCCCS
T ss_pred CCCcccccchHHHHHHHccCC
Confidence 455566777777655
No 8
>3v32_B Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} PDB: 3v34_A
Probab=99.76 E-value=5.4e-19 Score=158.53 Aligned_cols=127 Identities=22% Similarity=0.247 Sum_probs=104.9
Q ss_pred CCcCeeeeccceecccCC--CCChhhHHHHHHHHHhhCCCCCc-eEEEecCCCcCC-CCCCCcchHHHHHHHHhCCcEEe
Q 007684 406 GPFDAVIDGANVGLVNQH--NFSFYQLNTVVNRLRQMSPSKRM-PLVILHKGRVSG-GPAQIPKNKKLLDIWRDGGALYT 481 (593)
Q Consensus 406 ~~~d~vidg~nv~~~~~~--~~~~~~l~~vv~~l~~~~~~~~~-~lv~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 481 (593)
..--+||||+|||++.++ .|++.+|..+|++|++ .|.. +.|++++.+... ++.....+++++++|.+.+.+++
T Consensus 23 ~lR~IVIDGsNVA~~~g~~~~Fs~rgI~~aV~yf~~---rGh~~v~VfvP~~r~~~~~~~~~~~d~~~L~~L~~~g~l~~ 99 (185)
T 3v32_B 23 DLRPVVIDGSNVAMSHGNKEVFSCRGILLAVNWFLE---RGHTDITVFVPSWRKEQPRPDVPITDQHILRELEKKKILVF 99 (185)
T ss_dssp CBCCEEEEHHHHHHHHTTTTSEEHHHHHHHHHHHHH---TTCCCEEEEEEGGGGSCCCTTSCEECTHHHHHHHHTTCEEE
T ss_pred CCCeEEEeCHHHHhhhCCCCCcCHHHHHHHHHHHHH---cCCCceEEEechHhhhcccccCCCCCHHHHHHHHHCCCEEE
Confidence 455789999999999876 6788899999999998 3555 556776665543 23445667899999999999999
Q ss_pred CCCC--------CCChHHHHHHHHhCCcEEEecchhhccccccccccchhhhhcccEeEEEeecC
Q 007684 482 TPPG--------SNDDWYWLYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRD 538 (593)
Q Consensus 482 ~~~~--------s~DD~~~lyaa~~~~~~~vs~D~~rdh~~~~~~~~~f~~w~~~hq~~~~~~~~ 538 (593)
||.+ ++||+|||+.|...++.|||||+||||..+ ..-+.+|.+.|++.|+|...
T Consensus 100 TPs~~~~g~~~~~ydD~~il~~A~~~~g~IVSND~~rD~~~~---~p~~k~~Ie~rli~ytFv~d 161 (185)
T 3v32_B 100 TPSRRVGGKRVVCYDDRFIVKLAYESDGIVVSNDTYRDLQGE---RQEWKRFIEERLLMYSFVND 161 (185)
T ss_dssp ECCCC-------CCHHHHHHHHHHHTTCEEECSCCCHHHHHH---CHHHHHHHHHHEECCEEETT
T ss_pred CCCcccCCCcccCccHHHHHHHHHHcCCEEEeCccHHHHHhh---CHHHHHHHHhCcceeEEECC
Confidence 9999 899999999999999999999999999752 23466667999999999854
No 9
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.58 E-value=3.5e-13 Score=139.57 Aligned_cols=292 Identities=10% Similarity=0.017 Sum_probs=151.3
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL 146 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll 146 (593)
..+...|.+.|++++|...|.+.+ ...+.....|..+...+.+.|++++|.+.|+++.+. .|+.......+
T Consensus 71 ~~lg~~~~~~g~~~~A~~~~~~al-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 141 (388)
T 1w3b_A 71 SNLGNVYKERGQLQEAIEHYRHAL-------RLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDL 141 (388)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH-------HHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH-------HcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 566666666666666666665444 222333445666666666666666666666666654 34433333333
Q ss_pred -HHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-
Q 007684 147 -YVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK- 224 (593)
Q Consensus 147 -~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~- 224 (593)
..|... |++++|.++|+++.+.. +-+..+|+.+...+...|++++|...|+++.+.. |+
T Consensus 142 ~~~~~~~----------------g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~ 202 (388)
T 1w3b_A 142 GNLLKAL----------------GRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PNF 202 (388)
T ss_dssp HHHHHTT----------------SCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTC
T ss_pred HHHHHHc----------------cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCc
Confidence 244443 46666666666665543 3345556666666666666666666666665522 33
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 007684 225 LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP-EEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIED 303 (593)
Q Consensus 225 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~ 303 (593)
...|..+...+...|++++|.+.+++..... | +..++..+..++.+.|++++|.+.++++.+.. .-++.++..+..
T Consensus 203 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 279 (388)
T 1w3b_A 203 LDAYINLGNVLKEARIFDRAVAAYLRALSLS--PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLAN 279 (388)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 3445555555555566666655555554322 2 24445555555555566666665555555421 112334444444
Q ss_pred HHhcchhhhhccccchhhhHHHhhhcCCCcccccccccCCceEEEEecccCCCCcCcccccccccC----CCHHHHHHHH
Q 007684 304 WFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCID----IDPRETENFA 379 (593)
Q Consensus 304 ~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~----l~~~~~~~~~ 379 (593)
.+...+..+.+...++. ++.... .+.. +...+...+...+..++|++.++ +.|.+...+.
T Consensus 280 ~~~~~g~~~~A~~~~~~-----al~~~p--~~~~---------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 343 (388)
T 1w3b_A 280 ALKEKGSVAEAEDCYNT-----ALRLCP--THAD---------SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS 343 (388)
T ss_dssp HHHHHSCHHHHHHHHHH-----HHHHCT--TCHH---------HHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHH-----HHhhCc--ccHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 55444433333222211 110000 0000 00011111122223333333322 5566677888
Q ss_pred HHHHHHhhhhhhHHhHHHHHHHHHhc
Q 007684 380 SSLSNLACQREVRSDFNKFQEWLGRH 405 (593)
Q Consensus 380 ~~i~~l~~~~~~~~a~~~f~~~l~~~ 405 (593)
.+...|...|+.++|++.|+++++..
T Consensus 344 ~l~~~~~~~g~~~~A~~~~~~a~~~~ 369 (388)
T 1w3b_A 344 NLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 88888888888888999888888754
No 10
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.54 E-value=1.4e-13 Score=142.58 Aligned_cols=298 Identities=11% Similarity=0.008 Sum_probs=214.3
Q ss_pred ccccch--HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC
Q 007684 61 SADLTT--GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLS 138 (593)
Q Consensus 61 ~~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 138 (593)
.|+... ..+...+.+.|++++|...+...+ ...+.....|..+...|.+.|++++|+..|+++.+. .|+
T Consensus 29 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~-------~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~ 99 (388)
T 1w3b_A 29 EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI-------KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL--KPD 99 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTT
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------hcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--Ccc
Confidence 354444 667778889999999998886555 445566778999999999999999999999999876 444
Q ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007684 139 -QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMK 217 (593)
Q Consensus 139 -~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~ 217 (593)
..+|..+..++... |++++|.+.|+++.+.. +-+...+..+...+...|++++|.++|+++.
T Consensus 100 ~~~~~~~l~~~~~~~----------------g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 100 FIDGYINLAAALVAA----------------GDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp CHHHHHHHHHHHHHH----------------SCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 55788888888776 59999999999998865 4455678888899999999999999999998
Q ss_pred hCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCC-CH
Q 007684 218 SFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV-SE 295 (593)
Q Consensus 218 ~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~-~~ 295 (593)
+. .|+ ..+|..+...|.+.|+.++|.+.|+++.+.+- -+...|..+...+...|++++|...+++..+. .| +.
T Consensus 163 ~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~ 237 (388)
T 1w3b_A 163 ET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHA 237 (388)
T ss_dssp HH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCH
T ss_pred Hh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCH
Confidence 74 355 57899999999999999999999999987542 24566899999999999999999999998763 34 45
Q ss_pred HHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCcccccccccCCceEEEEecccCCCCcCcccccccccC----CC
Q 007684 296 STFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCID----ID 371 (593)
Q Consensus 296 ~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~----l~ 371 (593)
.++..+...+...+..+.+... +.+++..... +.. +...+...+...+..++|++.++ +.
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~-----~~~al~~~p~--~~~---------~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 301 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDT-----YRRAIELQPH--FPD---------AYCNLANALKEKGSVAEAEDCYNTALRLC 301 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHH-----HHHHHHTCSS--CHH---------HHHHHHHHHHHHSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHH-----HHHHHhhCCC--CHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 6777777777766644432221 1222211100 000 01112222233344445544444 45
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhc
Q 007684 372 PRETENFASSLSNLACQREVRSDFNKFQEWLGRH 405 (593)
Q Consensus 372 ~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~ 405 (593)
|.+...+..+...+...|+.++|++.|+++++..
T Consensus 302 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 335 (388)
T 1w3b_A 302 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF 335 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 5566666666667777777777777777766543
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.49 E-value=1.1e-12 Score=138.32 Aligned_cols=303 Identities=7% Similarity=-0.005 Sum_probs=216.1
Q ss_pred cccHHHHHHHHHHh-----CCChhhHHhhcCCccccch-HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHH
Q 007684 34 CHTYRSLLCWHMHS-----FTKPITDIKQNRFSADLTT-GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVL 107 (593)
Q Consensus 34 ~~~~~~ll~~~~~~-----~~~~~~~m~~~g~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (593)
...+..+...+... +...+..+.+.. +.+... ..+..+|...|++++|...+.+.+ ...+.....+
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-------~~~p~~~~~~ 97 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVI-------QLKMDFTAAR 97 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------HHCTTCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHH-------hcCCCcHHHH
Confidence 34455555555533 556666666542 223344 888889999999999999997766 3345557779
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHh
Q 007684 108 RHKLDMCSKRGDVFEALRLYDDARSNGITLSQ----HHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMIT 183 (593)
Q Consensus 108 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~ 183 (593)
..+...|.+.|++++|..+|+++.+. .|+. ..+..+...+...... .....+...|++++|.+.|+++.+
T Consensus 98 ~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~A~~~~~~~~~ 171 (450)
T 2y4t_A 98 LQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLR----SQALNAFGSGDYTAAIAFLDKILE 171 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHH----HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999886 4443 4555553331000000 000011123699999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH-
Q 007684 184 DKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPE- 262 (593)
Q Consensus 184 ~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t- 262 (593)
.. +.+..++..+..+|...|++++|.++++++.+.. +.+..+|..+...|.+.|+.++|.+.|+++... .|+...
T Consensus 172 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~ 247 (450)
T 2y4t_A 172 VC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRC 247 (450)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred hC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHH
Confidence 65 5688899999999999999999999999998743 134688999999999999999999999999854 344333
Q ss_pred HHHH------------HHHHHhcCCHHHHHHHHHHHHHccCCCCH-----HHHHHHHHHHhcchhhhhccccchhhhHHH
Q 007684 263 LSAL------------LKLSVDAKKVDKVYEILHRLRTLVRQVSE-----STFKIIEDWFDSVDAAEIGVLNWDVSKVRE 325 (593)
Q Consensus 263 ~~~L------------l~~~~~~g~~~~a~~~l~~m~~~~~~~~~-----~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~ 325 (593)
+..+ ...+.+.|++++|..+|+++.+. .|+. ..+..+...+...+..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~-------------- 311 (450)
T 2y4t_A 248 FAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKP-------------- 311 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCH--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCH--------------
Confidence 4444 78899999999999999999873 3442 2334444444333221
Q ss_pred hhhcCCCcccccccccCCceEEEEecccCCCCcCcccccccccC----CCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHH
Q 007684 326 GIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCID----IDPRETENFASSLSNLACQREVRSDFNKFQEW 401 (593)
Q Consensus 326 ~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~----l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~ 401 (593)
++|++.++ +.|.+...+..+...|...|+.++|.+.|++.
T Consensus 312 ------------------------------------~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 355 (450)
T 2y4t_A 312 ------------------------------------VEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETA 355 (450)
T ss_dssp ------------------------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ------------------------------------HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 22222221 34566788999999999999999999999999
Q ss_pred HHhcC
Q 007684 402 LGRHG 406 (593)
Q Consensus 402 l~~~~ 406 (593)
++..+
T Consensus 356 l~~~p 360 (450)
T 2y4t_A 356 QEHNE 360 (450)
T ss_dssp HTTSS
T ss_pred HHhCc
Confidence 98543
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.44 E-value=3e-12 Score=135.00 Aligned_cols=295 Identities=6% Similarity=-0.071 Sum_probs=210.5
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL 146 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll 146 (593)
..+...|.+.|++++|...|.+++ ...+.....+..+...|.+.|++++|+..|+++.+.+ +.+...+..+.
T Consensus 30 ~~~~~~~~~~g~~~~A~~~~~~~l-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 30 LELGKKLLAAGQLADALSQFHAAV-------DGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH-------HhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 778889999999999999997766 3345567779999999999999999999999999874 23567777777
Q ss_pred HHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCH---HHHHHH------------HHHHHhcCChHHHHH
Q 007684 147 YVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNE---ATFTSV------------ARLAVAKEDPEMAFD 211 (593)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~---~ty~~l------------i~~~~~~g~~~~A~~ 211 (593)
.+|... |++++|.+.|+++.+.. +.+. .++..+ ...+...|++++|.+
T Consensus 102 ~~~~~~----------------g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 164 (450)
T 2y4t_A 102 HLLLKQ----------------GKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA 164 (450)
T ss_dssp HHHHHT----------------TCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHc----------------CCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 788876 69999999999999765 3334 555555 444889999999999
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccC
Q 007684 212 LVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVR 291 (593)
Q Consensus 212 l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~ 291 (593)
+++++.+..- .+..++..+..+|.+.|++++|.++|+++.+.. +.+...+..+..+|...|+.++|...++++.+.
T Consensus 165 ~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 240 (450)
T 2y4t_A 165 FLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL-- 240 (450)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 9999987432 356789999999999999999999999998643 245788999999999999999999999999863
Q ss_pred CCCHHHH-HHH------------HHHHhcchhhhhccccchh-hhHHHhhhcCCCcccccccccCCceEEEEecccCCCC
Q 007684 292 QVSESTF-KII------------EDWFDSVDAAEIGVLNWDV-SKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGV 357 (593)
Q Consensus 292 ~~~~~t~-~~l------------~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~ 357 (593)
.|+.... ..+ ...+...+ .++. ....+.+.
T Consensus 241 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------~~~~A~~~~~~~l----------------------------- 284 (450)
T 2y4t_A 241 DQDHKRCFAHYKQVKKLNKLIESAEELIRDG-------RYTDATSKYESVM----------------------------- 284 (450)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHT-------CHHHHHHHHHHHH-----------------------------
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHH-----------------------------
Confidence 3443333 222 22221111 1111 11111111
Q ss_pred cCcccccccccCCCHH-HHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhcCCcCeeeeccceecccCCCCChhhHHHHHHH
Q 007684 358 CCSCNERLVCIDIDPR-ETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNR 436 (593)
Q Consensus 358 c~~~~~al~~~~l~~~-~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~~~d~vidg~nv~~~~~~~~~~~~l~~vv~~ 436 (593)
+...-.+. ....+..+...+...|+.++|++.|+++++..+....+...+-..+... +..+.+++.
T Consensus 285 --------~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~-----~~~~~A~~~ 351 (450)
T 2y4t_A 285 --------KTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIE-----EMYDEAIQD 351 (450)
T ss_dssp --------HHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-----TCHHHHHHH
T ss_pred --------hcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh-----cCHHHHHHH
Confidence 10001111 1456778888999999999999999999987543322222333333333 245566666
Q ss_pred HHh
Q 007684 437 LRQ 439 (593)
Q Consensus 437 l~~ 439 (593)
+++
T Consensus 352 ~~~ 354 (450)
T 2y4t_A 352 YET 354 (450)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
No 13
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.34 E-value=4.3e-11 Score=119.18 Aligned_cols=194 Identities=8% Similarity=0.018 Sum_probs=152.1
Q ss_pred CCccccch---HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 007684 59 RFSADLTT---GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGI 135 (593)
Q Consensus 59 g~~~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 135 (593)
...|+... -++..+|...|++++|...++. ...++...+..+...+...++.++|++.++++.+.+.
T Consensus 27 ~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----------~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~ 96 (291)
T 3mkr_A 27 PSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----------SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSV 96 (291)
T ss_dssp CCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----------TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCC
T ss_pred cCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----------cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccc
Confidence 34455432 6778899999999999876622 1122334588889999999999999999999998877
Q ss_pred CCCHHHHHHHHH-HHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 007684 136 TLSQHHYNVLLY-VCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVK 214 (593)
Q Consensus 136 ~p~~~ty~~ll~-~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~ 214 (593)
.|+...+..++. ++... |++++|++.|++ +.+..++..++..+.+.|++++|.+.++
T Consensus 97 ~P~~~~~~~~la~~~~~~----------------g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 97 DVTNTTFLLMAASIYFYD----------------QNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp CCSCHHHHHHHHHHHHHT----------------TCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHC----------------CCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 776666555554 66664 699999999987 5788899999999999999999999999
Q ss_pred HHHhCCCCCCcccHHHHH----HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 215 QMKSFGIPPKLRSYGPAL----FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 215 ~m~~~g~~p~~~ty~~li----~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
++.+.. |+.. ...+. ..+...|+.++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.|++..+
T Consensus 155 ~~~~~~--p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 228 (291)
T 3mkr_A 155 KMQDQD--EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228 (291)
T ss_dssp HHHHHC--TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhhC--cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 998753 6643 22233 3334458999999999999875 345777899999999999999999999999876
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.31 E-value=5.3e-11 Score=119.28 Aligned_cols=272 Identities=6% Similarity=-0.068 Sum_probs=199.2
Q ss_pred ccccch-HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH
Q 007684 61 SADLTT-GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQ 139 (593)
Q Consensus 61 ~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 139 (593)
+.+... ..+...+...|++++|...+.+++ ...+.....+..++..+...|++++|..+++++.+.. +-+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l-------~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 90 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVM-------EKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNP 90 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHH-------HHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTST
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------HcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCH
Confidence 334444 677778888899999999997766 3334444557778888899999999999999998763 2245
Q ss_pred HHHHHHHHHHHccCCCCCCCCCCCcccccc-cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007684 140 HHYNVLLYVCSCKCGSESSENGDRENDSNL-GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS 218 (593)
Q Consensus 140 ~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g-~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 218 (593)
..|..+-..+... | ++++|.+.|++..+.. +.+..++..+...+...|++++|.+.+++..+
T Consensus 91 ~~~~~l~~~~~~~----------------~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 153 (330)
T 3hym_B 91 VSWFAVGCYYLMV----------------GHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQ 153 (330)
T ss_dssp HHHHHHHHHHHHS----------------CSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh----------------hhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5666666666664 6 8999999999998766 45677899999999999999999999999987
Q ss_pred CCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccC-------
Q 007684 219 FGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVR------- 291 (593)
Q Consensus 219 ~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~------- 291 (593)
..- .+...+..+...|...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+...
T Consensus 154 ~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 231 (330)
T 3hym_B 154 LMK-GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVT 231 (330)
T ss_dssp HTT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCT
T ss_pred hcc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccccc
Confidence 432 235677789999999999999999999998654 23567789999999999999999999999876421
Q ss_pred -CCCHHHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCcccccccccCCceEEEEecccCCCCcCcccccccccCC
Q 007684 292 -QVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDI 370 (593)
Q Consensus 292 -~~~~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~l 370 (593)
......+..+...+...+..+.+.. .+.+.+ .+
T Consensus 232 ~~~~~~~~~~la~~~~~~g~~~~A~~-----~~~~a~-----------------------------------------~~ 265 (330)
T 3hym_B 232 VDKWEPLLNNLGHVCRKLKKYAEALD-----YHRQAL-----------------------------------------VL 265 (330)
T ss_dssp TTTCCHHHHHHHHHHHHTTCHHHHHH-----HHHHHH-----------------------------------------HH
T ss_pred ccHHHHHHHHHHHHHHHhcCHHHHHH-----HHHHHH-----------------------------------------hh
Confidence 2223455555555543332221111 111111 12
Q ss_pred CHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhc
Q 007684 371 DPRETENFASSLSNLACQREVRSDFNKFQEWLGRH 405 (593)
Q Consensus 371 ~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~ 405 (593)
.|.+...+..+...|...|+.++|.+.|++.++..
T Consensus 266 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 266 IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 34455677888888999999999999999877644
No 15
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.24 E-value=4.9e-12 Score=130.39 Aligned_cols=253 Identities=9% Similarity=-0.011 Sum_probs=104.3
Q ss_pred cCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 007684 75 KKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCG 154 (593)
Q Consensus 75 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~ 154 (593)
+.|++++|.+.++++- ++.+|..|..++.+.|++++|++.|.+. +|..+|..++..|...
T Consensus 15 ~~~~ld~A~~fae~~~------------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~-- 74 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTS-- 74 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhC--
Confidence 6677899999984332 3358999999999999999999999753 5778898888877775
Q ss_pred CCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 007684 155 SESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234 (593)
Q Consensus 155 ~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~ 234 (593)
|++++|+..++...+. .++..+.+.++.+|++.|+++++.++++ .|+..+|+.+...
T Consensus 75 --------------g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~ 131 (449)
T 1b89_A 75 --------------GNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDR 131 (449)
T ss_dssp --------------------------------------------------CHHHHTTTTT-------CC-----------
T ss_pred --------------CCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHH
Confidence 6999999988777764 5668889999999999999999998885 3788899999999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhhhc
Q 007684 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIG 314 (593)
Q Consensus 235 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~~~ 314 (593)
|...|.+++|...|..+ ..|..|..++.+.|++++|.+.++++ .++.++..+..+|...+..+.+
T Consensus 132 ~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA 196 (449)
T 1b89_A 132 CYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLA 196 (449)
T ss_dssp -----CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHH
Confidence 99999999999999987 36999999999999999999999998 3688999998888554432211
Q ss_pred cccchhhhHHHhhhcCCCcccccccccCCceEEEEecccCCCCcCcccccccccCCCHHHHHHHHHHHHHHhhhhhhHHh
Q 007684 315 VLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSD 394 (593)
Q Consensus 315 ~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~l~~~~~~~~~~~i~~l~~~~~~~~a 394 (593)
..|+.. +...|.+ ...++..|.+.|..+++
T Consensus 197 --------------------------------------------~~~~l~---L~~~ad~---l~~lv~~Yek~G~~eEa 226 (449)
T 1b89_A 197 --------------------------------------------QMCGLH---IVVHADE---LEELINYYQDRGYFEEL 226 (449)
T ss_dssp --------------------------------------------HHTTTT---TTTCHHH---HHHHHHHHHHTTCHHHH
T ss_pred --------------------------------------------HHHHHH---HHhCHhh---HHHHHHHHHHCCCHHHH
Confidence 112222 2245555 34688999999999999
Q ss_pred HHHHHHHHHhcCCcCeeeeccceecccCCCCChhhHHHHHHHHH
Q 007684 395 FNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLR 438 (593)
Q Consensus 395 ~~~f~~~l~~~~~~d~vidg~nv~~~~~~~~~~~~l~~vv~~l~ 438 (593)
+.+++.-+.....-.-+..++.+.|... +++.+.+-++.+.
T Consensus 227 i~lLe~aL~le~ah~~~ftel~il~~ky---~p~k~~ehl~~~~ 267 (449)
T 1b89_A 227 ITMLEAALGLERAHMGMFTELAILYSKF---KPQKMREHLELFW 267 (449)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHHHHTT---CHHHHHHHHHHHS
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHH
Confidence 9999998865544455556666666544 3444544444444
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.20 E-value=5.2e-10 Score=113.20 Aligned_cols=258 Identities=7% Similarity=0.005 Sum_probs=192.6
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC----CHHHH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITL----SQHHY 142 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p----~~~ty 142 (593)
..+...|...|++++|...+.+.+ ...+.....+..+...+.+.|++++|...|+++.+. .| +...+
T Consensus 41 ~~~a~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~ 111 (359)
T 3ieg_A 41 YRRATVFLAMGKSKAALPDLTKVI-------ALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAE 111 (359)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH-------HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHH-------HhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHH
Confidence 778888999999999999997666 334456677999999999999999999999999876 44 33333
Q ss_pred HHH------------HHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 007684 143 NVL------------LYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAF 210 (593)
Q Consensus 143 ~~l------------l~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~ 210 (593)
..+ ...+... |++++|.++|+++.+.. +.+..++..+...+...|++++|.
T Consensus 112 ~~l~~~~~~~~~~~~a~~~~~~----------------~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~ 174 (359)
T 3ieg_A 112 SQLVKADEMQRLRSQALDAFDG----------------ADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAI 174 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHc----------------cCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHH
Confidence 333 1344443 69999999999998876 567889999999999999999999
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHH------------HHHHHHHhcCCHH
Q 007684 211 DLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE-EPELS------------ALLKLSVDAKKVD 277 (593)
Q Consensus 211 ~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~------------~Ll~~~~~~g~~~ 277 (593)
..+++..+.. +.+..++..+...|...|+.++|.+.+++..+.. |+ ...+. .+...+.+.|+++
T Consensus 175 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 251 (359)
T 3ieg_A 175 SDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYT 251 (359)
T ss_dssp HHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 9999998753 2346788999999999999999999999988643 33 22222 2366688999999
Q ss_pred HHHHHHHHHHHccCCCCHHH-----HHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCcccccccccCCceEEEEecc
Q 007684 278 KVYEILHRLRTLVRQVSEST-----FKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQI 352 (593)
Q Consensus 278 ~a~~~l~~m~~~~~~~~~~t-----~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i 352 (593)
+|...++++.+.. |+... +..+...+...+. ++
T Consensus 252 ~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~-------~~--------------------------------- 289 (359)
T 3ieg_A 252 DATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEK-------PV--------------------------------- 289 (359)
T ss_dssp HHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTC-------HH---------------------------------
T ss_pred HHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccC-------HH---------------------------------
Confidence 9999999998743 33221 1122223322221 11
Q ss_pred cCCCCcCcccccccccC----CCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhc
Q 007684 353 DENGVCCSCNERLVCID----IDPRETENFASSLSNLACQREVRSDFNKFQEWLGRH 405 (593)
Q Consensus 353 ~~~g~c~~~~~al~~~~----l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~ 405 (593)
+|++.++ +.|.+...+..+...|...|+.++|.+.|++.++..
T Consensus 290 ----------~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 290 ----------EAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp ----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ----------HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 1221111 345567788888899999999999999999998764
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.19 E-value=1.3e-09 Score=111.20 Aligned_cols=265 Identities=11% Similarity=0.003 Sum_probs=181.5
Q ss_pred HHhcCCCcccCCC-CcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007684 72 AFSKKSTVNESSA-PNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCS 150 (593)
Q Consensus 72 ~~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~ 150 (593)
++...|++++|.. .+.+.+.. . ..........+..+...+.+.|++++|+.+|+++.+.. +.+..+|..+-.++.
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~-~--~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 109 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQF-E--EENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQA 109 (368)
T ss_dssp ------------CHHHHCCCCC-C--SSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhhhHHHhc-C--CCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 4555677888887 66554411 0 00011112347788899999999999999999999874 235667777777777
Q ss_pred ccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc-ccHH
Q 007684 151 CKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL-RSYG 229 (593)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~ty~ 229 (593)
.. |++++|.+.|+++.+.. +.+..++..+...+...|++++|.+.++++.+.. |+. ..+.
T Consensus 110 ~~----------------g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~ 170 (368)
T 1fch_A 110 EN----------------EQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVT 170 (368)
T ss_dssp HT----------------TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC
T ss_pred HC----------------cCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHH
Confidence 75 69999999999998876 5688899999999999999999999999998743 332 2222
Q ss_pred H---------------HHHHHHhcCChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCC
Q 007684 230 P---------------ALFGFCKLGNTDKAYEVDAHMGESGVV-PEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293 (593)
Q Consensus 230 ~---------------li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~ 293 (593)
. .+..+...|++++|.+.++++.+..-. ++...+..+...|...|++++|...++++.+.. ..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~ 249 (368)
T 1fch_A 171 PAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PN 249 (368)
T ss_dssp ---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cC
Confidence 1 244444999999999999999864322 257889999999999999999999999987742 22
Q ss_pred CHHHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCcccccccccCCceEEEEecccCCCCcCcccccccccCCCHH
Q 007684 294 SESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPR 373 (593)
Q Consensus 294 ~~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~l~~~ 373 (593)
+...+..+...+...+..+.+... +.++ +.+.|.
T Consensus 250 ~~~~~~~l~~~~~~~g~~~~A~~~-----~~~a-----------------------------------------l~~~~~ 283 (368)
T 1fch_A 250 DYLLWNKLGATLANGNQSEEAVAA-----YRRA-----------------------------------------LELQPG 283 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHH-----HHHH-----------------------------------------HHHCTT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHH-----HHHH-----------------------------------------HHhCCC
Confidence 345555555555443322211111 1111 113345
Q ss_pred HHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhcC
Q 007684 374 ETENFASSLSNLACQREVRSDFNKFQEWLGRHG 406 (593)
Q Consensus 374 ~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~ 406 (593)
+...+..+...|...|+.++|.+.|++.++..+
T Consensus 284 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 316 (368)
T 1fch_A 284 YIRSRYNLGISCINLGAHREAVEHFLEALNMQR 316 (368)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 567888888999999999999999999988643
No 18
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.18 E-value=2.3e-09 Score=103.13 Aligned_cols=197 Identities=10% Similarity=0.023 Sum_probs=163.2
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL 146 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll 146 (593)
..+...|...|++++|...+.+.+ ...+.....+..+...|.+.|++++|.++|+++.+.. +.+...+..+.
T Consensus 41 ~~~a~~~~~~~~~~~A~~~~~~al-------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 112 (252)
T 2ho1_A 41 IQLGLGYLQRGNTEQAKVPLRKAL-------EIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYG 112 (252)
T ss_dssp HHHHHHHHHTTCTGGGHHHHHHHH-------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHHHH-------hcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHH
Confidence 677778999999999999997666 3334556779999999999999999999999988764 22567777777
Q ss_pred HHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc
Q 007684 147 YVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDP-NEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL 225 (593)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 225 (593)
..|... |++++|.++|+++...+..| +...+..+...+...|++++|.+.+++..+..- .+.
T Consensus 113 ~~~~~~----------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~ 175 (252)
T 2ho1_A 113 GFLYEQ----------------KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQP 175 (252)
T ss_dssp HHHHHT----------------TCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCH
T ss_pred HHHHHH----------------hHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccH
Confidence 777775 59999999999998743445 556888899999999999999999999987432 246
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007684 226 RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289 (593)
Q Consensus 226 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~ 289 (593)
..+..+...|.+.|+.++|.+.++++.+.. ..+...+..+...+...|+.++|.++++++.+.
T Consensus 176 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 176 SVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 788889999999999999999999988643 245667888999999999999999999999773
No 19
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.18 E-value=7.2e-10 Score=113.33 Aligned_cols=235 Identities=11% Similarity=-0.024 Sum_probs=174.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC
Q 007684 105 GVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD 184 (593)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~ 184 (593)
..+..+...+.+.|++++|+.+|+++.+.. +.+..+|..+-..|... |++++|.+.|+++.+.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~----------------g~~~~A~~~~~~al~~ 128 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAEN----------------ENEQAAIVALQRCLEL 128 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHC----------------CCHHHHHHHHHHHHhc
Confidence 347888899999999999999999998764 33677788777788776 6999999999999887
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-----------cccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007684 185 KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-----------LRSYGPALFGFCKLGNTDKAYEVDAHMGE 253 (593)
Q Consensus 185 g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-----------~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 253 (593)
. +.+..++..+..+|...|++++|.+.++++.+.. |+ ...+..+...|.+.|++++|.+.++++.+
T Consensus 129 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 205 (365)
T 4eqf_A 129 Q-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAH 205 (365)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 5 5578899999999999999999999999997632 33 22334458899999999999999999987
Q ss_pred CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCC
Q 007684 254 SGVV-PEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGG 332 (593)
Q Consensus 254 ~g~~-p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~ 332 (593)
..-. ++...+..+...|...|++++|.+.+++..+.. ..+..++..+...|...+..+.+... +.+
T Consensus 206 ~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~-----~~~------- 272 (365)
T 4eqf_A 206 QNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEA-----YTR------- 272 (365)
T ss_dssp HSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH-----HHH-------
T ss_pred hCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH-----HHH-------
Confidence 5422 267889999999999999999999999998742 22455666666666444332211111 111
Q ss_pred cccccccccCCceEEEEecccCCCCcCcccccccccCCCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhcC
Q 007684 333 GWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHG 406 (593)
Q Consensus 333 ~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~ 406 (593)
.+.+.|.+...+..+...|...|+.++|.+.|++.++..+
T Consensus 273 ----------------------------------al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 312 (365)
T 4eqf_A 273 ----------------------------------ALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQR 312 (365)
T ss_dssp ----------------------------------HHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred ----------------------------------HHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 1113455677888899999999999999999999988643
No 20
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.17 E-value=4.4e-09 Score=106.29 Aligned_cols=196 Identities=8% Similarity=-0.071 Sum_probs=159.8
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL 146 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll 146 (593)
..+...+...|++++|...+.+.+ ...+.....+..+...+...|++++|+..|+++.+.. +-+...|..+-
T Consensus 7 ~~~~~~~~~~g~~~~A~~~~~~~l-------~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 78 (359)
T 3ieg_A 7 LELGKKLLAAGQLADALSQFHAAV-------DGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-------HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-------hhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHH
Confidence 456667889999999999997776 3345566789999999999999999999999998763 22556676666
Q ss_pred HHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCC---CCHHHHHHH------------HHHHHhcCChHHHHH
Q 007684 147 YVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVD---PNEATFTSV------------ARLAVAKEDPEMAFD 211 (593)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~---p~~~ty~~l------------i~~~~~~g~~~~A~~ 211 (593)
.++... |++++|.+.|++..+.. + .+...+..+ ...+...|++++|.+
T Consensus 79 ~~~~~~----------------~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 141 (359)
T 3ieg_A 79 HLLLKQ----------------GKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAIT 141 (359)
T ss_dssp HHHHHH----------------TCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHc----------------CChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 677775 59999999999998764 2 244455544 578899999999999
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007684 212 LVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289 (593)
Q Consensus 212 l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~ 289 (593)
+++++.+..- .+...+..+...|...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+.
T Consensus 142 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 217 (359)
T 3ieg_A 142 FLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 217 (359)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999987432 346788889999999999999999999998653 346677999999999999999999999999763
No 21
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.16 E-value=2.2e-09 Score=100.86 Aligned_cols=197 Identities=11% Similarity=0.012 Sum_probs=147.4
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL 146 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll 146 (593)
..+...+...|++++|...+.+.+ ...+.....+..+...|...|++++|..+|+++.+.. +.+..++..+.
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 12 TQLAMEYMRGQDYRQATASIEDAL-------KSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH-------HhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 666777888888888888886555 3334456678888888888899999999988887653 22556666666
Q ss_pred HHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-
Q 007684 147 YVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPN-EATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK- 224 (593)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~- 224 (593)
..+.... |++++|.+.|+++.+.+..|+ ..++..+...+...|++++|...++++.+.. |+
T Consensus 84 ~~~~~~~---------------~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~ 146 (225)
T 2vq2_A 84 WFLCGRL---------------NRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQF 146 (225)
T ss_dssp HHHHTTT---------------CCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTC
T ss_pred HHHHHhc---------------CcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC
Confidence 6666640 388899999988887333343 5678888888888999999999998887643 43
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 225 LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 225 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
...+..+...|.+.|+.++|.+.+++..+..-..+...+..+...+...|+.+.+..+++.+.+
T Consensus 147 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 147 PPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 5677888888888999999999888887643223566677777778888888888888888765
No 22
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.15 E-value=3.2e-09 Score=101.30 Aligned_cols=195 Identities=14% Similarity=0.077 Sum_probs=151.6
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL 146 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll 146 (593)
..+...+...|++++|...+.+.+ ...+.....+..+...+.+.|++++|+..|+++.+.. +.+...+..+.
T Consensus 27 ~~~a~~~~~~~~~~~A~~~~~~~l-------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 27 GQQMGRGSEFGDYEKAAEAFTKAI-------EENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------CCTTHHHHH-------TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHH-------HhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 455667889999999999997766 3344556778999999999999999999999988763 23567777777
Q ss_pred HHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcc
Q 007684 147 YVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLR 226 (593)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 226 (593)
..|... |++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+..- .+..
T Consensus 99 ~~~~~~----------------~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~ 160 (243)
T 2q7f_A 99 NVYVVK----------------EMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTE 160 (243)
T ss_dssp HHHHHT----------------TCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHH
T ss_pred HHHHHh----------------ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHH
Confidence 777775 59999999999998866 56788899999999999999999999999987432 3467
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 227 SYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 227 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
.+..+...|.+.|+.++|.+.+++..... ..+...+..+..+|...|+.++|.+.++++.+
T Consensus 161 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 161 ARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 88889999999999999999999988653 23567799999999999999999999999977
No 23
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.15 E-value=3.3e-10 Score=121.15 Aligned_cols=300 Identities=10% Similarity=-0.014 Sum_probs=208.0
Q ss_pred CCChhhHHhhcCCccccch-HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 007684 48 FTKPITDIKQNRFSADLTT-GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRL 126 (593)
Q Consensus 48 ~~~~~~~m~~~g~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 126 (593)
+...+..+.+.. |+... ..+..+|.+.|++++|...+.+.+ ...+.....+..+..+|.+.|++++|...
T Consensus 25 A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 95 (514)
T 2gw1_A 25 AIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKAL-------ELKPDYSKVLLRRASANEGLGKFADAMFD 95 (514)
T ss_dssp HHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-------HHCSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHh-------ccChHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 445555555554 56666 888899999999999999997666 33455667899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccC----CCCCC-----------------------------------------C--
Q 007684 127 YDDARSNGITLSQHHYNVLLYVCSCKC----GSESS-----------------------------------------E-- 159 (593)
Q Consensus 127 ~~~m~~~g~~p~~~ty~~ll~~~~~~~----~~~~~-----------------------------------------~-- 159 (593)
|+++.+.+- ++......++..+.... ..+.. .
T Consensus 96 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (514)
T 2gw1_A 96 LSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPE 174 (514)
T ss_dssp HHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCC
T ss_pred HHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHH
Confidence 999987752 22222222222111100 00000 0
Q ss_pred -CC--C----------------CcccccccHHHHHHHHHHHHh-----CCC--------CCCHHHHHHHHHHHHhcCChH
Q 007684 160 -NG--D----------------RENDSNLGLKRGFEIFQQMIT-----DKV--------DPNEATFTSVARLAVAKEDPE 207 (593)
Q Consensus 160 -~~--~----------------~~~~~~g~~~~a~~l~~~M~~-----~g~--------~p~~~ty~~li~~~~~~g~~~ 207 (593)
.. + -.+.+.|++++|.++|+++.+ ..- +.+..++..+...+...|+++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (514)
T 2gw1_A 175 LTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPL 254 (514)
T ss_dssp CCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHH
Confidence 00 0 001136899999999999987 311 223567888999999999999
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007684 208 MAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287 (593)
Q Consensus 208 ~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~ 287 (593)
+|..+++++.+.. |+..+|..+...|...|++++|.+.++++....- .+...+..+...+...|++++|...+++..
T Consensus 255 ~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 331 (514)
T 2gw1_A 255 GAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAK 331 (514)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999998754 4477888899999999999999999999986542 355678999999999999999999999998
Q ss_pred HccCCCCHHHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCcccccccccCCceEEEEecccCCCCcCcccccccc
Q 007684 288 TLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVC 367 (593)
Q Consensus 288 ~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~ 367 (593)
+.... +...+..+...+...+..+.+. ...+.+.
T Consensus 332 ~~~~~-~~~~~~~l~~~~~~~~~~~~A~------~~~~~~~--------------------------------------- 365 (514)
T 2gw1_A 332 ELDPE-NIFPYIQLACLAYRENKFDDCE------TLFSEAK--------------------------------------- 365 (514)
T ss_dssp HTCSS-CSHHHHHHHHHTTTTTCHHHHH------HHHHHHH---------------------------------------
T ss_pred HhChh-hHHHHHHHHHHHHHcCCHHHHH------HHHHHHH---------------------------------------
Confidence 74322 3344555555443333222111 1111111
Q ss_pred cCCCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhcCC
Q 007684 368 IDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGP 407 (593)
Q Consensus 368 ~~l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~~ 407 (593)
...|.+...+..+...|...|+.++|...|++.++..+.
T Consensus 366 -~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 404 (514)
T 2gw1_A 366 -RKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK 404 (514)
T ss_dssp -HHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred -HHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 122334567778888899999999999999999886543
No 24
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.13 E-value=2.6e-09 Score=106.78 Aligned_cols=232 Identities=11% Similarity=-0.083 Sum_probs=175.9
Q ss_pred CCChhhHHhhcCCccccc-h-HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCC-CHHHHH
Q 007684 48 FTKPITDIKQNRFSADLT-T-GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRG-DVFEAL 124 (593)
Q Consensus 48 ~~~~~~~m~~~g~~~~~~-~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~ 124 (593)
+...+..+.+.. |+.. . ..++..+...|++++|...+.+.+ ...+.....+..+...+...| ++++|.
T Consensus 41 A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~~A~ 111 (330)
T 3hym_B 41 CYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLV-------DLYPSNPVSWFAVGCYYLMVGHKNEHAR 111 (330)
T ss_dssp HHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHH-------HHCTTSTHHHHHHHHHHHHSCSCHHHHH
T ss_pred HHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHH-------HhCcCCHHHHHHHHHHHHHhhhhHHHHH
Confidence 555555555443 3333 3 667788899999999999997666 334445667888899999999 999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 007684 125 RLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKE 204 (593)
Q Consensus 125 ~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g 204 (593)
..|+++.+..- .+...|..+-..+... |++++|.+.|++..+.. +.+..++..+...+...|
T Consensus 112 ~~~~~a~~~~~-~~~~~~~~l~~~~~~~----------------~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 112 RYLSKATTLEK-TYGPAWIAYGHSFAVE----------------SEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHTTCT-TCTHHHHHHHHHHHHH----------------TCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCC-ccHHHHHHHHHHHHHc----------------cCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHh
Confidence 99999987642 2456677777777775 59999999999998765 445667778999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhcCCH
Q 007684 205 DPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESG--------VVPEEPELSALLKLSVDAKKV 276 (593)
Q Consensus 205 ~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g--------~~p~~~t~~~Ll~~~~~~g~~ 276 (593)
++++|.+.+++..+..- .+..++..+...|.+.|++++|.+.+++..... .......+..+..++...|++
T Consensus 174 ~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 99999999999987431 336788889999999999999999999987531 133456789999999999999
Q ss_pred HHHHHHHHHHHHccCCCCHHHHHHHHHHHhcc
Q 007684 277 DKVYEILHRLRTLVRQVSESTFKIIEDWFDSV 308 (593)
Q Consensus 277 ~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~ 308 (593)
++|...+++..+... -+...+..+...+...
T Consensus 253 ~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~ 283 (330)
T 3hym_B 253 AEALDYHRQALVLIP-QNASTYSAIGYIHSLM 283 (330)
T ss_dssp HHHHHHHHHHHHHST-TCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCc-cchHHHHHHHHHHHHh
Confidence 999999999887432 2344555555555433
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.13 E-value=1.3e-09 Score=111.51 Aligned_cols=224 Identities=7% Similarity=-0.079 Sum_probs=155.7
Q ss_pred CCChhhHHhhcCCccccch-HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 007684 48 FTKPITDIKQNRFSADLTT-GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRL 126 (593)
Q Consensus 48 ~~~~~~~m~~~g~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 126 (593)
+...+..+.+.. +.+... ..+...|.+.|++++|...|.+.+ ...+.....+..+...|.+.|++++|+.+
T Consensus 84 A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 155 (365)
T 4eqf_A 84 TILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCL-------ELQPNNLKALMALAVSYTNTSHQQDACEA 155 (365)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------HHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-------hcCCCCHHHHHHHHHHHHccccHHHHHHH
Confidence 444555544432 112233 777777888888888888876555 22344456677788888888888888888
Q ss_pred HHHHHHCCCCCCHH-HHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcC
Q 007684 127 YDDARSNGITLSQH-HYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVD-PNEATFTSVARLAVAKE 204 (593)
Q Consensus 127 ~~~m~~~g~~p~~~-ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~-p~~~ty~~li~~~~~~g 204 (593)
|+++.+.. |+.. .+..+. +.......+...+...|++++|.++|+++.+.... ++..++..+...+...|
T Consensus 156 ~~~al~~~--p~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g 227 (365)
T 4eqf_A 156 LKNWIKQN--PKYKYLVKNKK------GSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSG 227 (365)
T ss_dssp HHHHHHHC--HHHHCC-------------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhC--ccchHHHhhhc------cchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCC
Confidence 88777642 2211 111110 00000001112334458999999999999886522 26889999999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007684 205 DPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILH 284 (593)
Q Consensus 205 ~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~ 284 (593)
++++|.+.+++..+..- .+..+|..+..+|.+.|++++|.+.|++..+.. +.+...+..+..+|...|++++|...|+
T Consensus 228 ~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 305 (365)
T 4eqf_A 228 EFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFL 305 (365)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999987431 346789999999999999999999999998653 2246779999999999999999999999
Q ss_pred HHHHc
Q 007684 285 RLRTL 289 (593)
Q Consensus 285 ~m~~~ 289 (593)
+..+.
T Consensus 306 ~al~~ 310 (365)
T 4eqf_A 306 TALSL 310 (365)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98763
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.12 E-value=1.9e-09 Score=109.91 Aligned_cols=251 Identities=9% Similarity=-0.072 Sum_probs=166.9
Q ss_pred CCChhhHHhhcCCccccc-h-HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 007684 48 FTKPITDIKQNRFSADLT-T-GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALR 125 (593)
Q Consensus 48 ~~~~~~~m~~~g~~~~~~-~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 125 (593)
+...+..+.+.. |+.. . ..+...|...|++++|...+.+.+ ...+.....+..+...|...|++++|+.
T Consensus 83 A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 153 (368)
T 1fch_A 83 AVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCL-------ELKPDNQTALMALAVSFTNESLQRQACE 153 (368)
T ss_dssp HHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------HHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH-------hcCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 444444444432 3222 3 666677777777777777775554 2234455567777777777778888877
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcC
Q 007684 126 LYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVD-PNEATFTSVARLAVAKE 204 (593)
Q Consensus 126 l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~-p~~~ty~~li~~~~~~g 204 (593)
.|+++.+.... +...+..+-... ...........+..+...|++++|.+.|+++.+.... ++..++..+...+...|
T Consensus 154 ~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g 231 (368)
T 1fch_A 154 ILRDWLRYTPA-YAHLVTPAEEGA-GGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG 231 (368)
T ss_dssp HHHHHHHTSTT-TGGGCC----------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCcC-cHHHHHHHHHHh-hhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcC
Confidence 77777765311 111111000000 0000000000011112347999999999999876522 15889999999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007684 205 DPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283 (593)
Q Consensus 205 ~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l 283 (593)
++++|...++++.+.. |+ ..+|..+...|.+.|++++|.+.|+++.+.. +.+...+..+..+|.+.|++++|...+
T Consensus 232 ~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 308 (368)
T 1fch_A 232 EYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHF 308 (368)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999998743 44 6789999999999999999999999988643 235677999999999999999999999
Q ss_pred HHHHHccCCC----------CHHHHHHHHHHHhcchhhh
Q 007684 284 HRLRTLVRQV----------SESTFKIIEDWFDSVDAAE 312 (593)
Q Consensus 284 ~~m~~~~~~~----------~~~t~~~l~~~~~~~~~~~ 312 (593)
++..+..... ...++..+...+...+..+
T Consensus 309 ~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 347 (368)
T 1fch_A 309 LEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD 347 (368)
T ss_dssp HHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChH
Confidence 9987632221 1567777777776655444
No 27
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.11 E-value=4e-09 Score=99.79 Aligned_cols=164 Identities=15% Similarity=0.022 Sum_probs=140.2
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHH
Q 007684 103 PEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMI 182 (593)
Q Consensus 103 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~ 182 (593)
+...+..+-..+.+.|++++|+..|++..+.. +-+...+..+-.++... |++++|++.|++..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~----------------g~~~~A~~~~~~al 66 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKL----------------GLVNPALENGKTLV 66 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHH
Confidence 34567888889999999999999999998763 22455666555666665 69999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHhc-----------CChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHH
Q 007684 183 TDKVDPNEATFTSVARLAVAK-----------EDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAH 250 (593)
Q Consensus 183 ~~g~~p~~~ty~~li~~~~~~-----------g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~ 250 (593)
+.. +-+..++..+..++... |++++|...+++..+. .|+ ...+..+-..|...|+.++|.+.|++
T Consensus 67 ~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 143 (217)
T 2pl2_A 67 ART-PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQ 143 (217)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhC-CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 876 55778999999999999 9999999999999874 365 56788899999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 251 MGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 251 m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
..+.. .+...+..+..+|...|++++|...+++..+
T Consensus 144 al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 179 (217)
T 2pl2_A 144 ALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALE 179 (217)
T ss_dssp HHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99877 6888899999999999999999999999876
No 28
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.11 E-value=1.3e-08 Score=97.91 Aligned_cols=165 Identities=10% Similarity=0.007 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC
Q 007684 105 GVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD 184 (593)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~ 184 (593)
..+..+...+...|++++|..+|+++.+.. +.+...+..+...|... |++++|.+.|+++.+.
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~----------------~~~~~A~~~~~~a~~~ 100 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTE----------------MEPKLADEEYRKALAS 100 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHH
Confidence 348888899999999999999999988763 23566777777777775 5999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 007684 185 KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPEL 263 (593)
Q Consensus 185 g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 263 (593)
. +.+..++..+...+...|++++|.++++++.+.+..|+ ...+..+...|.+.|++++|.+.+++..+.. ..+...+
T Consensus 101 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 178 (252)
T 2ho1_A 101 D-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVA 178 (252)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHH
T ss_pred C-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHH
Confidence 5 45788999999999999999999999999987444454 5678889999999999999999999988654 2356778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 264 SALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 264 ~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
..+...+...|+.++|..+++++.+
T Consensus 179 ~~la~~~~~~g~~~~A~~~~~~~~~ 203 (252)
T 2ho1_A 179 LEMADLLYKEREYVPARQYYDLFAQ 203 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8999999999999999999998865
No 29
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.11 E-value=1.3e-09 Score=103.28 Aligned_cols=203 Identities=10% Similarity=-0.060 Sum_probs=148.9
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITL-SQHHYNVL 145 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~l 145 (593)
..+-..+.+.|++++|...+++.+ ...+.....+..+-..+.+.|++++|+..|++..+. .| +...+..+
T Consensus 9 ~~lg~~~~~~g~~~~A~~~~~~al-------~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 9 LRLGVQLYALGRYDAALTLFERAL-------KENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-------TTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 667778999999999999997666 445566777999999999999999999999999877 34 44555555
Q ss_pred HHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc
Q 007684 146 LYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL 225 (593)
Q Consensus 146 l~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 225 (593)
-.++...+.. ........|++++|.+.|++..+.. +-+..++..+..++...|++++|...|++..+.. .+.
T Consensus 80 g~~~~~~~~~-----~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~ 151 (217)
T 2pl2_A 80 SEAYVALYRQ-----AEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTP 151 (217)
T ss_dssp HHHHHHHHHT-----CSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH
T ss_pred HHHHHHhhhh-----hhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cch
Confidence 5555553000 0000001169999999999998865 4567889999999999999999999999998876 677
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007684 226 RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287 (593)
Q Consensus 226 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~ 287 (593)
..+..+..+|...|+.++|.+.|++..+.. +-+...+..+..++...|+.++|.+.+++..
T Consensus 152 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 152 EIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 888999999999999999999999998643 1245668889999999999999999888764
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.11 E-value=5e-10 Score=111.97 Aligned_cols=273 Identities=8% Similarity=-0.061 Sum_probs=175.1
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL 146 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll 146 (593)
..+...+...|++++|...+.+.+ ...+.....+..+...+...|++++|...|+++.+.. +.+..++..+.
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 96 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVC-------QAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALA 96 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHH-------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHH
Confidence 456677889999999999996666 3344566778889999999999999999999988763 23566777776
Q ss_pred HHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHH--------------HH-HHHhcCChHHHHH
Q 007684 147 YVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSV--------------AR-LAVAKEDPEMAFD 211 (593)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~l--------------i~-~~~~~g~~~~A~~ 211 (593)
..|... |++++|.+.|+++.... +.+...+..+ .. .+...|++++|.+
T Consensus 97 ~~~~~~----------------~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 159 (327)
T 3cv0_A 97 VSHTNE----------------HNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRT 159 (327)
T ss_dssp HHHHHT----------------TCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHH
T ss_pred HHHHHc----------------CCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHH
Confidence 777765 57888888888877654 2222222222 22 2666777888888
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccC
Q 007684 212 LVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVR 291 (593)
Q Consensus 212 l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~ 291 (593)
+++++.+..- .+..++..+...|.+.|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 160 ~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~- 236 (327)
T 3cv0_A 160 LLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN- 236 (327)
T ss_dssp HHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-
Confidence 8888776432 245677777788888888888888888877543 2345667778888888888888888888776632
Q ss_pred CCCHHHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCC--cccccccccCCceEEEEecccCCCCcCcccccccccC
Q 007684 292 QVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGG--GWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCID 369 (593)
Q Consensus 292 ~~~~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~--~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~ 369 (593)
..+...+..+...+...+..+.+.. .+.+.+..... ...+. .
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~A~~-----~~~~a~~~~~~~~~~~~~-------------------------------~ 280 (327)
T 3cv0_A 237 PGYVRVMYNMAVSYSNMSQYDLAAK-----QLVRAIYMQVGGTTPTGE-------------------------------A 280 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHH-----HHHHHHHHHTTSCC------------------------------------
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHH-----HHHHHHHhCCcccccccc-------------------------------c
Confidence 1234455555555543332221111 11111110000 00000 0
Q ss_pred CCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHH
Q 007684 370 IDPRETENFASSLSNLACQREVRSDFNKFQEWLG 403 (593)
Q Consensus 370 l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~ 403 (593)
....+...+..+...+...|+.++|.+.+++.++
T Consensus 281 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 281 SREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred hhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 0012567788888999999999999998876544
No 31
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.09 E-value=9.1e-09 Score=109.83 Aligned_cols=264 Identities=11% Similarity=-0.070 Sum_probs=181.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC
Q 007684 105 GVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD 184 (593)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~ 184 (593)
..+..+-..+.+.|++++|+..|+++.+.. |+..+|..+..+|... |++++|.+.|+++.+.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~----------------g~~~~A~~~~~~al~~ 68 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSV----------------GDLKKVVEMSTKALEL 68 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHH----------------TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHH----------------hhHHHHHHHHHHHhcc
Confidence 347778888999999999999999999874 7988888888888876 6999999999999887
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----------------------------------------
Q 007684 185 KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK---------------------------------------- 224 (593)
Q Consensus 185 g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---------------------------------------- 224 (593)
+ +.+..++..+..++...|++++|...|+++...+- ++
T Consensus 69 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 146 (514)
T 2gw1_A 69 K-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQ 146 (514)
T ss_dssp C-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC-----------------
T ss_pred C-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Confidence 6 56778999999999999999999999999876442 11
Q ss_pred ---------------------------------------cccHHHHHHHHH---hcCChhHHHHHHHHHHh-----CCCC
Q 007684 225 ---------------------------------------LRSYGPALFGFC---KLGNTDKAYEVDAHMGE-----SGVV 257 (593)
Q Consensus 225 ---------------------------------------~~ty~~li~~~~---~~g~~~~A~~l~~~m~~-----~g~~ 257 (593)
...+......+. +.|++++|.++|+++.+ ..-.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 226 (514)
T 2gw1_A 147 PAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKN 226 (514)
T ss_dssp ----------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred hhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccC
Confidence 111122222222 37999999999999987 3212
Q ss_pred C--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhhhccccchhhhHHHhhhc
Q 007684 258 P--------EEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVR 329 (593)
Q Consensus 258 p--------~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 329 (593)
| +...+..+...+...|++++|..+++++.+.... ...+..+...+...+..+.+.. ..+....
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~------~~~~~~~ 298 (514)
T 2gw1_A 227 NEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYN------YFDKALK 298 (514)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGG------HHHHHHT
T ss_pred ccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHH------HHHHHhh
Confidence 2 2455788888999999999999999999875433 6666666666655443332222 2222211
Q ss_pred CCCcccccccccCCceEEEEecccCCCCcCcccccccccC----CCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhc
Q 007684 330 GGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCID----IDPRETENFASSLSNLACQREVRSDFNKFQEWLGRH 405 (593)
Q Consensus 330 ~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~----l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~ 405 (593)
... .+.. +...+...+...+..++|+..+. +.|.+...+..+...|...|+.++|++.|++.++..
T Consensus 299 ~~~-~~~~---------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 368 (514)
T 2gw1_A 299 LDS-NNSS---------VYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF 368 (514)
T ss_dssp TCT-TCTH---------HHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS
T ss_pred cCc-CCHH---------HHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 110 0000 00111222223344455555444 556566677777777778888888888888877764
Q ss_pred C
Q 007684 406 G 406 (593)
Q Consensus 406 ~ 406 (593)
+
T Consensus 369 ~ 369 (514)
T 2gw1_A 369 P 369 (514)
T ss_dssp T
T ss_pred c
Confidence 4
No 32
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.08 E-value=2.1e-10 Score=118.28 Aligned_cols=188 Identities=13% Similarity=0.095 Sum_probs=78.3
Q ss_pred ch-HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007684 65 TT-GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYN 143 (593)
Q Consensus 65 ~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~ 143 (593)
.. ..|..++.+.|++++|...|.. ..+...|..++..+...|++++|..+++..++. .+++.+.+
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfik------------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~ 98 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIK------------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVET 98 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHc------------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHH
Confidence 35 8999999999999999999932 124447999999999999999999988877764 55678888
Q ss_pred HHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 007684 144 VLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPP 223 (593)
Q Consensus 144 ~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 223 (593)
.|+.+|.+. |+++++.++++ .|+..+|..+...|...|++++|..+|..+
T Consensus 99 ~Li~~Y~Kl----------------g~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------- 148 (449)
T 1b89_A 99 ELIFALAKT----------------NRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 148 (449)
T ss_dssp --------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-------
T ss_pred HHHHHHHHh----------------CCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence 999999986 68999888884 478889999999999999999999999966
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 007684 224 KLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIED 303 (593)
Q Consensus 224 ~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~ 303 (593)
..|..+..++.+.|++++|.+.++++ .+..+|..++.+|+..|+++.|...... +...+.-...++.
T Consensus 149 --~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~ 215 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELIN 215 (449)
T ss_dssp --TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHH
T ss_pred --hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHH
Confidence 58999999999999999999999998 3788999999999999999999655443 2244555556777
Q ss_pred HHhcch
Q 007684 304 WFDSVD 309 (593)
Q Consensus 304 ~~~~~~ 309 (593)
.|.+.+
T Consensus 216 ~Yek~G 221 (449)
T 1b89_A 216 YYQDRG 221 (449)
T ss_dssp HHHHTT
T ss_pred HHHHCC
Confidence 775544
No 33
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.08 E-value=1.3e-08 Score=100.76 Aligned_cols=240 Identities=12% Similarity=-0.007 Sum_probs=165.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHH
Q 007684 106 VLRHKLDMCSKRGDVFEALRLYDDARSN-------GITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIF 178 (593)
Q Consensus 106 ~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~ 178 (593)
.+..+...+...|++++|..+|+++.+. ........+..+-..|... |++++|.+.|
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~----------------g~~~~A~~~~ 92 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQ----------------NKYKDAANLL 92 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHT----------------TCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHC----------------CCHHHHHHHH
Confidence 4889999999999999999999998863 1222344555555566665 6999999999
Q ss_pred HHHHhC------CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCCC-cccHHHHHHHHHhcCChhHH
Q 007684 179 QQMITD------KV-DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSF------GIPPK-LRSYGPALFGFCKLGNTDKA 244 (593)
Q Consensus 179 ~~M~~~------g~-~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~-~~ty~~li~~~~~~g~~~~A 244 (593)
++.... +- +....++..+...+...|++++|.+.+++..+. +-.|. ..++..+...|...|++++|
T Consensus 93 ~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 172 (311)
T 3nf1_A 93 NDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEV 172 (311)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHH
Confidence 988753 22 234568889999999999999999999998753 22233 46788899999999999999
Q ss_pred HHHHHHHHhC------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcc-------CCCCHHHHHHHHHHHhcchh
Q 007684 245 YEVDAHMGES------GVVPE-EPELSALLKLSVDAKKVDKVYEILHRLRTLV-------RQVSESTFKIIEDWFDSVDA 310 (593)
Q Consensus 245 ~~l~~~m~~~------g~~p~-~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~-------~~~~~~t~~~l~~~~~~~~~ 310 (593)
.+.+++.... +-.|+ ...+..+..+|...|++++|.+.++++.+.. ..+...........+
T Consensus 173 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~----- 247 (311)
T 3nf1_A 173 EYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEER----- 247 (311)
T ss_dssp HHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHH-----
Confidence 9999998754 22333 3458889999999999999999999987621 111111110111111
Q ss_pred hhhccccchhhhHHHhhhcCCCcccccccccCCceEEEEecccCCCCcCcccccccccC----CCHHHHHHHHHHHHHHh
Q 007684 311 AEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCID----IDPRETENFASSLSNLA 386 (593)
Q Consensus 311 ~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~----l~~~~~~~~~~~i~~l~ 386 (593)
...+ ..........++...+. ..|.....+..+...|.
T Consensus 248 -----------------~~~~---------------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~ 289 (311)
T 3nf1_A 248 -----------------EECK---------------------GKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYR 289 (311)
T ss_dssp -----------------HHC----------------------------CCSCCCC---------CHHHHHHHHHHHHHHH
T ss_pred -----------------HHhc---------------------CchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHH
Confidence 0000 00011111222222222 55777888999999999
Q ss_pred hhhhhHHhHHHHHHHHHh
Q 007684 387 CQREVRSDFNKFQEWLGR 404 (593)
Q Consensus 387 ~~~~~~~a~~~f~~~l~~ 404 (593)
..|+.++|.+.|++.++.
T Consensus 290 ~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 290 RQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp HHTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 999999999999998764
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.08 E-value=2.5e-09 Score=106.79 Aligned_cols=248 Identities=6% Similarity=-0.084 Sum_probs=177.9
Q ss_pred CCChhhHHhhcCCcccc-ch-HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 007684 48 FTKPITDIKQNRFSADL-TT-GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALR 125 (593)
Q Consensus 48 ~~~~~~~m~~~g~~~~~-~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 125 (593)
+...+..+.+.. |+. .. ..+...|...|++++|...+.+.+ ...+.....+..+...+...|++++|.+
T Consensus 40 A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-------~~~~~~~~~~~~la~~~~~~~~~~~A~~ 110 (327)
T 3cv0_A 40 AALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHAR-------MLDPKDIAVHAALAVSHTNEHNANAALA 110 (327)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------HHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------hcCcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 444555555432 333 33 778889999999999999997666 3344566779999999999999999999
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHHccCCCCCCCCC-CC-cccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007684 126 LYDDARSNGITLSQ-HHYNVLLYVCSCKCGSESSENG-DR-ENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVA 202 (593)
Q Consensus 126 l~~~m~~~g~~p~~-~ty~~ll~~~~~~~~~~~~~~~-~~-~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~ 202 (593)
.|+++.+.. |+. ..+..++..+.... ....+ .. .+...|++++|.+.++++.+.. +.+..++..+...+..
T Consensus 111 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 184 (327)
T 3cv0_A 111 SLRAWLLSQ--PQYEQLGSVNLQADVDID---DLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNL 184 (327)
T ss_dssp HHHHHHHTS--TTTTTC-----------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CccHHHHHHHhHHHHHHH---HHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence 999998763 222 22222211110000 00000 01 1344689999999999998876 5578899999999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007684 203 KEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI 282 (593)
Q Consensus 203 ~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~ 282 (593)
.|++++|.+.++++.+..- .+..+|..+...|.+.|+.++|.+.++++.+.. +.+...+..+..++...|++++|.+.
T Consensus 185 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 262 (327)
T 3cv0_A 185 SNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQ 262 (327)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 9999999999999987431 346788999999999999999999999988643 23567799999999999999999999
Q ss_pred HHHHHHccCCC-----------CHHHHHHHHHHHhcchhhh
Q 007684 283 LHRLRTLVRQV-----------SESTFKIIEDWFDSVDAAE 312 (593)
Q Consensus 283 l~~m~~~~~~~-----------~~~t~~~l~~~~~~~~~~~ 312 (593)
++++.+..... +...+..+...+...+..+
T Consensus 263 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 303 (327)
T 3cv0_A 263 LVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPD 303 (327)
T ss_dssp HHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHH
Confidence 99987743331 3456666666665555443
No 35
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.01 E-value=6.5e-08 Score=90.63 Aligned_cols=187 Identities=10% Similarity=0.002 Sum_probs=150.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHh
Q 007684 104 EGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMIT 183 (593)
Q Consensus 104 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~ 183 (593)
...+..+...+...|++++|..+|+++.+.. +.+...+..+...|... |++++|.+.|+++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~----------------~~~~~A~~~~~~a~~ 70 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYL----------------KVNDKAQESFRQALS 70 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc----------------CChHHHHHHHHHHHH
Confidence 3458889999999999999999999988763 23566777777777775 599999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 007684 184 DKVDPNEATFTSVARLAVAK-EDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEP 261 (593)
Q Consensus 184 ~g~~p~~~ty~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 261 (593)
.. +.+..++..+...+... |++++|...++++.+.+..|+ ...+..+...|.+.|+.++|.+.++++.+..- .+..
T Consensus 71 ~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~ 148 (225)
T 2vq2_A 71 IK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPP 148 (225)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHH
T ss_pred hC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCch
Confidence 65 55788999999999999 999999999999988433344 56788899999999999999999999886432 2467
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcch
Q 007684 262 ELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVD 309 (593)
Q Consensus 262 t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~ 309 (593)
.+..+..++...|+.++|.+.++++.+.....+...+..+...+...+
T Consensus 149 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (225)
T 2vq2_A 149 AFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALG 196 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 789999999999999999999999887433235555555555554333
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.00 E-value=3.7e-08 Score=94.53 Aligned_cols=225 Identities=10% Similarity=0.028 Sum_probs=168.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC
Q 007684 105 GVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD 184 (593)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~ 184 (593)
..+..+...+...|++++|+.+|+++.+.. .+...|..+-.++... |++++|.+.|++..+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~----------------~~~~~A~~~~~~a~~~ 67 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEK----------------GEYETAISTLNDAVEQ 67 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHc----------------ccHHHHHHHHHHHHHh
Confidence 458889999999999999999999999887 6778888877777776 5999999999998764
Q ss_pred C--CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 007684 185 K--VDPN----EATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP 258 (593)
Q Consensus 185 g--~~p~----~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 258 (593)
. ..++ ..++..+...+...|++++|.+.+++..+.. |+ ...+.+.|+.++|.+.++++.... |
T Consensus 68 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~~a~~~~~~~~~~~--~ 136 (258)
T 3uq3_A 68 GREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNAEKELKKAEAEAYVN--P 136 (258)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHHHHHHHHHCC--H
T ss_pred CcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHHHHHHHHHHHHHHcC--c
Confidence 3 1223 5789999999999999999999999998743 44 245677888999999999988643 3
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCccccc
Q 007684 259 E-EPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQ 337 (593)
Q Consensus 259 ~-~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~ 337 (593)
+ ...+..+...+...|++++|...+++..+... .+...+..+...+...+..+.+.. .+.+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~-----~~~~a----------- 199 (258)
T 3uq3_A 137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIA-----DCNKA----------- 199 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH-----HHHHH-----------
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHH-----HHHHH-----------
Confidence 3 44578888889999999999999999877432 234455555555533332221111 11111
Q ss_pred ccccCCceEEEEecccCCCCcCcccccccccCCCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhc
Q 007684 338 GWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRH 405 (593)
Q Consensus 338 ~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~ 405 (593)
+.+.|.+...+..+...|...|+.++|.+.|++.++..
T Consensus 200 ------------------------------l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 200 ------------------------------IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp ------------------------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ------------------------------HHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 11334556778888889999999999999999988754
No 37
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.98 E-value=2.4e-08 Score=95.06 Aligned_cols=164 Identities=12% Similarity=0.047 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC
Q 007684 105 GVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD 184 (593)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~ 184 (593)
..|..+...+...|++++|..+|+++.+.. +.+...+..+...+... |++++|.+.|++....
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~----------------~~~~~A~~~~~~~~~~ 86 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSV----------------NELERALAFYDKALEL 86 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHc
Confidence 347788888999999999999999998763 23566676666677765 5999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 007684 185 KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELS 264 (593)
Q Consensus 185 g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 264 (593)
. +.+..++..+...+...|++++|.+.++++.+..- .+...+..+...|.+.|+.++|.+.++++.+.. ..+...+.
T Consensus 87 ~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 163 (243)
T 2q7f_A 87 D-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARF 163 (243)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred C-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHH
Confidence 5 55788899999999999999999999999987542 346778889999999999999999999988643 23567788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 265 ALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 265 ~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
.+...+...|++++|...++++.+
T Consensus 164 ~l~~~~~~~~~~~~A~~~~~~~~~ 187 (243)
T 2q7f_A 164 QFGMCLANEGMLDEALSQFAAVTE 187 (243)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 899999999999999999988865
No 38
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.98 E-value=1.4e-08 Score=100.94 Aligned_cols=196 Identities=15% Similarity=0.062 Sum_probs=153.5
Q ss_pred ccccch-HHHHHHHhcCCCcccCCCCcccccchHHhhhhc-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC
Q 007684 61 SADLTT-GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKAR-RESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLS 138 (593)
Q Consensus 61 ~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 138 (593)
+|+..+ ..+...+...|+.++|...+++++ ... .+.....+..+-..+.+.|++++|++.+++ ..+
T Consensus 62 ~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll------~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~ 129 (291)
T 3mkr_A 62 APELQAVRMFAEYLASHSRRDAIVAELDREM------SRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDS 129 (291)
T ss_dssp CHHHHHHHHHHHHHHCSTTHHHHHHHHHHHH------HSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCS
T ss_pred ChhHHHHHHHHHHHcCCCcHHHHHHHHHHHH------hcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCC
Confidence 444444 888889999999999999986655 122 233455677778899999999999999987 457
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCChHHHHHHHHH
Q 007684 139 QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATF---TSVARLAVAKEDPEMAFDLVKQ 215 (593)
Q Consensus 139 ~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty---~~li~~~~~~g~~~~A~~l~~~ 215 (593)
...+..+..++.+. |+.++|.+.|+++.+.. |+...+ .+.+..+...|++++|..+|++
T Consensus 130 ~~~~~~l~~~~~~~----------------g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~ 191 (291)
T 3mkr_A 130 LECMAMTVQILLKL----------------DRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQE 191 (291)
T ss_dssp HHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC----------------CCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 77888888888876 69999999999998875 543211 2233444556999999999999
Q ss_pred HHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH
Q 007684 216 MKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDK-VYEILHRLRT 288 (593)
Q Consensus 216 m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~-a~~~l~~m~~ 288 (593)
+.+. .+.+...++.+..++.+.|++++|++.|++..+.. +-+..++..++..+...|+.++ +.++++++.+
T Consensus 192 ~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 192 MADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9886 33457889999999999999999999999988643 2356679999999999998865 6788888876
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.95 E-value=1.5e-08 Score=97.27 Aligned_cols=196 Identities=15% Similarity=0.083 Sum_probs=150.4
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC--CCCC----HH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNG--ITLS----QH 140 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~----~~ 140 (593)
..+-..+...|++++|...+.+.+ ... .....+..+...+...|++++|+..|+++.+.. ..++ ..
T Consensus 9 ~~~g~~~~~~~~~~~A~~~~~~a~-------~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 9 KAEGNKFYKARQFDEAIEHYNKAW-------ELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-------HHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHH-------Hhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 566778889999999999997666 222 556779999999999999999999999988652 1122 46
Q ss_pred HHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCC------------------------C-CCCHHHHHH
Q 007684 141 HYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDK------------------------V-DPNEATFTS 195 (593)
Q Consensus 141 ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g------------------------~-~p~~~ty~~ 195 (593)
+|..+-..+... |++++|.+.|++..... . +.+...+..
T Consensus 81 ~~~~l~~~~~~~----------------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 144 (258)
T 3uq3_A 81 SFARIGNAYHKL----------------GDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARL 144 (258)
T ss_dssp HHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHHc----------------ccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHH
Confidence 666666677775 47777777777776621 1 234457778
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 007684 196 VARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK 275 (593)
Q Consensus 196 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~ 275 (593)
+...+...|++++|...+++..+..- .+..+|..+...|.+.|++++|.+.+++..+.. +.+...|..+..++...|+
T Consensus 145 ~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~ 222 (258)
T 3uq3_A 145 EGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKE 222 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhh
Confidence 88888899999999999998877432 346778888888999999999999999887643 2346678888888999999
Q ss_pred HHHHHHHHHHHHH
Q 007684 276 VDKVYEILHRLRT 288 (593)
Q Consensus 276 ~~~a~~~l~~m~~ 288 (593)
.++|...+++..+
T Consensus 223 ~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 223 YASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998888766
No 40
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.95 E-value=1.7e-08 Score=108.57 Aligned_cols=277 Identities=8% Similarity=-0.028 Sum_probs=173.0
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL 146 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll 146 (593)
..+-..+.+.|++++|...|.+.+ ...+.....+..+...|.+.|++++|++.|+++.+.+ +.+..++..+.
T Consensus 29 ~~~g~~~~~~g~~~~A~~~~~~al-------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la 100 (537)
T 3fp2_A 29 KNRGNHFFTAKNFNEAIKYYQYAI-------ELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHTTCCC-CHHHHHHHH-------HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHH-------hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHH
Confidence 556668889999999999997776 3445567779999999999999999999999988764 22456666666
Q ss_pred HHHHccCCCCCCCCCC--------------Ccc-----------------------------------------------
Q 007684 147 YVCSCKCGSESSENGD--------------REN----------------------------------------------- 165 (593)
Q Consensus 147 ~~~~~~~~~~~~~~~~--------------~~~----------------------------------------------- 165 (593)
.++...+..+.+...+ ..+
T Consensus 101 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 6666543211110000 000
Q ss_pred --------------------------------cccccHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHhcCCh
Q 007684 166 --------------------------------DSNLGLKRGFEIFQQMITDKVDPN-------EATFTSVARLAVAKEDP 206 (593)
Q Consensus 166 --------------------------------~~~g~~~~a~~l~~~M~~~g~~p~-------~~ty~~li~~~~~~g~~ 206 (593)
...|++++|.++|+++.+.. +.+ ..++..+...+...|++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~ 259 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNL 259 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccH
Confidence 00135566666666665443 122 22455555666677777
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007684 207 EMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286 (593)
Q Consensus 207 ~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m 286 (593)
++|.+.+++..+. .|+..+|..+...|...|++++|.+.++++.+..- .+...+..+...+...|++++|...+++.
T Consensus 260 ~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 260 LDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp HHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 7777777777663 35556666677777777777777777777665331 24555777777777777777777777777
Q ss_pred HHccCCCCHHHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCcccccccccCCceEEEEecccCCCCcCccccccc
Q 007684 287 RTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLV 366 (593)
Q Consensus 287 ~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~ 366 (593)
.+.... +...+..+...+...+.. ++|++
T Consensus 337 ~~~~~~-~~~~~~~la~~~~~~g~~--------------------------------------------------~~A~~ 365 (537)
T 3fp2_A 337 QSLNPE-NVYPYIQLACLLYKQGKF--------------------------------------------------TESEA 365 (537)
T ss_dssp HHHCTT-CSHHHHHHHHHHHHTTCH--------------------------------------------------HHHHH
T ss_pred HHhCCC-CHHHHHHHHHHHHHcCCH--------------------------------------------------HHHHH
Confidence 653211 223344444444322221 22222
Q ss_pred ccC----CCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhcC
Q 007684 367 CID----IDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHG 406 (593)
Q Consensus 367 ~~~----l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~ 406 (593)
.+. +.|.+...+..+...+...|+.++|.+.|++.++..+
T Consensus 366 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 366 FFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 221 3345566777888889999999999999999988654
No 41
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.91 E-value=1.4e-07 Score=101.31 Aligned_cols=243 Identities=11% Similarity=0.039 Sum_probs=175.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCC
Q 007684 106 VLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDK 185 (593)
Q Consensus 106 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g 185 (593)
.+..+...+...|++++|...|+++.+. .|+...|..+-..+... |++++|.+.|+++.+..
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~----------------~~~~~A~~~~~~~~~~~ 306 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADK----------------ENSQEFFKFFQKAVDLN 306 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCS----------------SCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHh----------------cCHHHHHHHHHHHhccC
Confidence 3666777888999999999999999987 56666676666666665 69999999999998766
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 007684 186 VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELS 264 (593)
Q Consensus 186 ~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 264 (593)
+.+..++..+...+...|++++|.+.+++..+.. |+ ...|..+...|...|++++|.+.++++.+.. +.+...+.
T Consensus 307 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 382 (537)
T 3fp2_A 307 -PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN--PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPT 382 (537)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHH
T ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 5578899999999999999999999999998743 44 6788999999999999999999999998653 23456788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHccCCCCH-----HHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCccccccc
Q 007684 265 ALLKLSVDAKKVDKVYEILHRLRTLVRQVSE-----STFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGW 339 (593)
Q Consensus 265 ~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~-----~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~ 339 (593)
.+...+...|++++|...++++.+....... ..+......+..... .+...+
T Consensus 383 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~--------------------- 439 (537)
T 3fp2_A 383 FFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSS--QDPTQL--------------------- 439 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHT--C----C---------------------
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhh--ccchhh---------------------
Confidence 9999999999999999999998763211110 001111111111100 000000
Q ss_pred ccCCceEEEEecccCCCCcCcccccccccC----CCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhcCCcCe
Q 007684 340 LGSGKWRVERTQIDENGVCCSCNERLVCID----IDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDA 410 (593)
Q Consensus 340 ~~~~~~~v~~~~i~~~g~c~~~~~al~~~~----l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~~~d~ 410 (593)
..+..++|+..+. +.|.+...+..+...|...|+.++|.+.|++.++..+..+.
T Consensus 440 -----------------~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 497 (537)
T 3fp2_A 440 -----------------DEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDE 497 (537)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHH
T ss_pred -----------------hHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 0011122222222 34556678888899999999999999999999987655443
No 42
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.89 E-value=9.1e-08 Score=92.87 Aligned_cols=222 Identities=8% Similarity=-0.063 Sum_probs=158.7
Q ss_pred cCCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHH
Q 007684 116 KRGDVFEALRLYDDARSNGITL---SQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEAT 192 (593)
Q Consensus 116 ~~g~~~~A~~l~~~m~~~g~~p---~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~t 192 (593)
..|++++|+..|+++.+..... +..+|..+-..+... |++++|.+.|++..+.. +.+..+
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~A~~~~~~al~~~-~~~~~~ 79 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSL----------------GLRALARNDFSQALAIR-PDMPEV 79 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHC-CCCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHc----------------ccHHHHHHHHHHHHHcC-CCcHHH
Confidence 3478999999999998864221 345555555566665 69999999999998876 557889
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007684 193 FTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVD 272 (593)
Q Consensus 193 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~ 272 (593)
+..+...+...|++++|.+.+++..+..- .+..++..+...|.+.|++++|.+.++++.+. .|+......++..+..
T Consensus 80 ~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~ 156 (275)
T 1xnf_A 80 FNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQ 156 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHH
Confidence 99999999999999999999999987431 24678899999999999999999999999864 3555555666666678
Q ss_pred cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCcccccccccCCceEEEEecc
Q 007684 273 AKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQI 352 (593)
Q Consensus 273 ~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i 352 (593)
.|+.++|...+.+..... .++...+. +...+..... .+. ..
T Consensus 157 ~~~~~~A~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~-------~~~--a~---------------------------- 197 (275)
T 1xnf_A 157 KLDEKQAKEVLKQHFEKS-DKEQWGWN-IVEFYLGNIS-------EQT--LM---------------------------- 197 (275)
T ss_dssp HHCHHHHHHHHHHHHHHS-CCCSTHHH-HHHHHTTSSC-------HHH--HH----------------------------
T ss_pred hcCHHHHHHHHHHHHhcC-CcchHHHH-HHHHHHHhcC-------HHH--HH----------------------------
Confidence 899999999998876642 22333332 2222211110 000 00
Q ss_pred cCCCCcCcccccccccCCCH----HHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhc
Q 007684 353 DENGVCCSCNERLVCIDIDP----RETENFASSLSNLACQREVRSDFNKFQEWLGRH 405 (593)
Q Consensus 353 ~~~g~c~~~~~al~~~~l~~----~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~ 405 (593)
....+.+...| .+...+..+...|...|+.++|.+.|++.++..
T Consensus 198 ---------~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 198 ---------ERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp ---------HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ---------HHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 00111111222 335778888889999999999999999998865
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.87 E-value=6.6e-07 Score=87.20 Aligned_cols=164 Identities=11% Similarity=-0.004 Sum_probs=136.0
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHH
Q 007684 103 PEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMI 182 (593)
Q Consensus 103 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~ 182 (593)
....+..+-..|...|++++|+..|++..+.+ +...+..+-..|..+. ...|+.++|++.|++..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~------------~~~~~~~~A~~~~~~a~ 69 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQ------------GVEKNLKKAASFYAKAC 69 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS------------SSCCCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC------------CcCCCHHHHHHHHHHHH
Confidence 45567788888999999999999999998843 4455655555666510 01259999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHHhC
Q 007684 183 TDKVDPNEATFTSVARLAVA----KEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK----LGNTDKAYEVDAHMGES 254 (593)
Q Consensus 183 ~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~ 254 (593)
+.+ +..++..+...|.. .+++++|.+.|++..+.+ +...+..+-..|.. .++.++|.+.|++..+.
T Consensus 70 ~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~ 143 (273)
T 1ouv_A 70 DLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL 143 (273)
T ss_dssp HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred HCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc
Confidence 876 78889999999999 999999999999998865 56788889999999 99999999999999887
Q ss_pred CCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcc
Q 007684 255 GVVPEEPELSALLKLSVD----AKKVDKVYEILHRLRTLV 290 (593)
Q Consensus 255 g~~p~~~t~~~Ll~~~~~----~g~~~~a~~~l~~m~~~~ 290 (593)
+ +...+..+...|.. .++.++|...+++..+.+
T Consensus 144 ~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~ 180 (273)
T 1ouv_A 144 N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK 180 (273)
T ss_dssp T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 6 56678888888888 899999999999988753
No 44
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.86 E-value=3.6e-07 Score=83.25 Aligned_cols=165 Identities=10% Similarity=0.021 Sum_probs=139.3
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHH
Q 007684 103 PEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMI 182 (593)
Q Consensus 103 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~ 182 (593)
...+|..+-..|.+.|++++|++.|++..+..- -+..+|..+-.+|... |++++|.+.+....
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~----------------~~~~~a~~~~~~~~ 66 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDI----------------GLPNDAIESLKKFV 66 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHC----------------CCHHHHHHHHHHHH
Confidence 456799999999999999999999999887732 2556666666677775 59999999999988
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 007684 183 TDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEP 261 (593)
Q Consensus 183 ~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 261 (593)
... +-+...+..+...+...++++.|.+.+++..... |+ ...+..+...|.+.|++++|.+.|++..+.. +-+..
T Consensus 67 ~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~ 142 (184)
T 3vtx_A 67 VLD-TTSAEAYYILGSANFMIDEKQAAIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIR 142 (184)
T ss_dssp HHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred hcC-chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhh
Confidence 766 5567788888899999999999999999988743 44 5778889999999999999999999988653 23566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 262 ELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 262 t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
.|..+..+|.+.|+.++|.+.|++..+
T Consensus 143 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 143 AYQSIGLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 799999999999999999999999877
No 45
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.86 E-value=2.2e-08 Score=99.06 Aligned_cols=205 Identities=12% Similarity=0.053 Sum_probs=153.9
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHC------CCCC-
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESP--EGVLRHKLDMCSKRGDVFEALRLYDDARSN------GITL- 137 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p- 137 (593)
..+...|...|++++|...+.+.+. ......+...+ ...+..+...|...|++++|..+|+++.+. +-.|
T Consensus 31 ~~l~~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 109 (311)
T 3nf1_A 31 HNLVIQYASQGRYEVAVPLCKQALE-DLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPA 109 (311)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChH
Confidence 7777889999999999999987772 22211111222 234888999999999999999999998754 2222
Q ss_pred CHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCChHHHH
Q 007684 138 SQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD------KVDP-NEATFTSVARLAVAKEDPEMAF 210 (593)
Q Consensus 138 ~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~------g~~p-~~~ty~~li~~~~~~g~~~~A~ 210 (593)
...++..+-..|... |++++|.+.|++..+. +-.| ...++..+...+...|++++|.
T Consensus 110 ~~~~~~~l~~~~~~~----------------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 173 (311)
T 3nf1_A 110 VAATLNNLAVLYGKR----------------GKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVE 173 (311)
T ss_dssp HHHHHHHHHHHHHTT----------------TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHHHc----------------CcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Confidence 234555555677665 6999999999988763 2223 3457888999999999999999
Q ss_pred HHHHHHHhC------CCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCC----------------------------
Q 007684 211 DLVKQMKSF------GIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESG---------------------------- 255 (593)
Q Consensus 211 ~l~~~m~~~------g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g---------------------------- 255 (593)
+++++..+. +-.|. ..++..+...|.+.|+.++|.+.++++.+..
T Consensus 174 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (311)
T 3nf1_A 174 YYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGK 253 (311)
T ss_dssp HHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCc
Confidence 999998763 22343 4578889999999999999999999987521
Q ss_pred -------------------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 256 -------------------VVP-EEPELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 256 -------------------~~p-~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
..| +..++..+..+|.+.|++++|.+++++..+
T Consensus 254 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 254 QKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ----CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 112 234578888999999999999999988765
No 46
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.85 E-value=1.6e-07 Score=84.84 Aligned_cols=164 Identities=13% Similarity=0.027 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC
Q 007684 105 GVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD 184 (593)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~ 184 (593)
..+..+...+...|++++|...|+++.+.. +.+...+..+...+... |++++|.+.++++.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------------~~~~~A~~~~~~~~~~ 71 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKT----------------GAVDRGTELLERSLAD 71 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHhc
Confidence 347788888999999999999999887653 23566777777777765 5999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 007684 185 KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELS 264 (593)
Q Consensus 185 g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 264 (593)
. +.+..++..+...+...|++++|.+.++++.+..- .+...+..+...|.+.|+.++|.+.+++..+.. ..+...+.
T Consensus 72 ~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 148 (186)
T 3as5_A 72 A-PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHR 148 (186)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHH
Confidence 5 55788899999999999999999999999987532 346778889999999999999999999988654 23567789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 265 ALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 265 ~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
.+...+...|+.++|...+++..+
T Consensus 149 ~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 149 AIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999876
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.81 E-value=6.1e-07 Score=87.45 Aligned_cols=205 Identities=7% Similarity=-0.066 Sum_probs=163.5
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSK----RGDVFEALRLYDDARSNGITLSQHHY 142 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~ty 142 (593)
..+-..|...|++++|...|.+.. . ..+...+..+-..|.. .+++++|+..|++..+.+ +...+
T Consensus 10 ~~lg~~~~~~~~~~~A~~~~~~a~-------~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 10 VGLGAKSYKEKDFTQAKKYFEKAC-------D--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-------H--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHH-------H--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 556667888899999999986555 2 3456678888889999 999999999999999886 66777
Q ss_pred HHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHh
Q 007684 143 NVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVA----KEDPEMAFDLVKQMKS 218 (593)
Q Consensus 143 ~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~~m~~ 218 (593)
..+-..|..+. ...|+.++|++.|++..+.+ +..++..+...|.. .+++++|.+.+++..+
T Consensus 78 ~~lg~~~~~g~------------~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~ 142 (273)
T 1ouv_A 78 HLLGNLYYSGQ------------GVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD 142 (273)
T ss_dssp HHHHHHHHHTS------------SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC------------CcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh
Confidence 76666776610 01259999999999998876 77889999999999 9999999999999988
Q ss_pred CCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcc
Q 007684 219 FGIPPKLRSYGPALFGFCK----LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVD----AKKVDKVYEILHRLRTLV 290 (593)
Q Consensus 219 ~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~----~g~~~~a~~~l~~m~~~~ 290 (593)
.+ +...+..+...|.. .++.++|.+.|++..+.+ +...+..+...|.. .++.++|...+++..+.+
T Consensus 143 ~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~ 216 (273)
T 1ouv_A 143 LN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE 216 (273)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT
T ss_pred cC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC
Confidence 65 45667778888888 999999999999988765 46778888899999 999999999999988753
Q ss_pred CCCCHHHHHHHHHHHhc
Q 007684 291 RQVSESTFKIIEDWFDS 307 (593)
Q Consensus 291 ~~~~~~t~~~l~~~~~~ 307 (593)
. ...+..+-..|..
T Consensus 217 ~---~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 217 N---GGGCFNLGAMQYN 230 (273)
T ss_dssp C---HHHHHHHHHHHHT
T ss_pred C---HHHHHHHHHHHHc
Confidence 2 4444455555543
No 48
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.78 E-value=1e-06 Score=85.40 Aligned_cols=236 Identities=11% Similarity=-0.002 Sum_probs=162.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCC
Q 007684 107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV 186 (593)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~ 186 (593)
+-.....+.+.|++++|+.+|+++.+..- -+...+..+-..|... |++++|.+.|++..+..-
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~----------------~~~~~A~~~~~~a~~~~~ 68 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYEL----------------AKYDLAQKDIETYFSKVN 68 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHT----------------TCHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHH----------------hhHHHHHHHHHHHHhccC
Confidence 45566778899999999999999988732 1334666666677665 699999999999988432
Q ss_pred CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHHH
Q 007684 187 DP--NEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP-EEPEL 263 (593)
Q Consensus 187 ~p--~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~ 263 (593)
.| ...+|..+...+...|++++|.+.+++..+..- -+..+|..+...|...|++++|.+.+++..+. .| +...+
T Consensus 69 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~ 145 (272)
T 3u4t_A 69 ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVF 145 (272)
T ss_dssp TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHH
T ss_pred chhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHH
Confidence 22 234589999999999999999999999987432 23578999999999999999999999998765 34 44556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHccCCCC-HHHHHHHHHHHhcchhhhhccccchh--hhHHHhhhcCCCcccccccc
Q 007684 264 SALLKLSVDAKKVDKVYEILHRLRTLVRQVS-ESTFKIIEDWFDSVDAAEIGVLNWDV--SKVREGIVRGGGGWHGQGWL 340 (593)
Q Consensus 264 ~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~-~~t~~~l~~~~~~~~~~~~~~~~~d~--~~~~~~~~~~g~~~~g~~~~ 340 (593)
..+...+...+++++|.+.+++..+. .|+ ...+..+...+...+. ...++. ..+.++
T Consensus 146 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a-------------- 205 (272)
T 3u4t_A 146 YELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDP----DTKQGLAKPYYEKL-------------- 205 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHST----TCSSCTTHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCc----chhhHHHHHHHHHH--------------
Confidence 66662444556999999999999873 233 3333333333322111 000111 111111
Q ss_pred cCCceEEEEecccCCCCcCcccccccccCCCH-----HHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhcC
Q 007684 341 GSGKWRVERTQIDENGVCCSCNERLVCIDIDP-----RETENFASSLSNLACQREVRSDFNKFQEWLGRHG 406 (593)
Q Consensus 341 ~~~~~~v~~~~i~~~g~c~~~~~al~~~~l~~-----~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~ 406 (593)
++...-.| .....+..+...|...|+.++|.+.|++.++..+
T Consensus 206 ------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 252 (272)
T 3u4t_A 206 ------------------------IEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDP 252 (272)
T ss_dssp ------------------------HHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred ------------------------HHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Confidence 11111001 1235677777889999999999999999998654
No 49
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.76 E-value=3.7e-08 Score=95.74 Aligned_cols=199 Identities=13% Similarity=0.047 Sum_probs=146.4
Q ss_pred HhcCCCcccCCCCcccccchHHhhhhcCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHC------CCCC-CHHHHH
Q 007684 73 FSKKSTVNESSAPNTGTMSNKSKKKARRESP--EGVLRHKLDMCSKRGDVFEALRLYDDARSN------GITL-SQHHYN 143 (593)
Q Consensus 73 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p-~~~ty~ 143 (593)
....|++++|...+++.+.. ..+..+...| ...+..+...|...|++++|+.+|+++.+. +-.| ...+|.
T Consensus 11 ~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 89 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALED-LEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLN 89 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHH-HHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHH-HHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 45678888898888777732 2222222223 234889999999999999999999998754 2222 234555
Q ss_pred HHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC------C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007684 144 VLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD------K-VDPNEATFTSVARLAVAKEDPEMAFDLVKQM 216 (593)
Q Consensus 144 ~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~------g-~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m 216 (593)
.+-..|... |++++|.+.|++.... . -+....++..+...+...|++++|.+.+++.
T Consensus 90 ~l~~~~~~~----------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 153 (283)
T 3edt_B 90 NLAVLYGKR----------------GKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRA 153 (283)
T ss_dssp HHHHHHHTT----------------TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHh----------------ccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555677765 6999999999988754 1 1234568899999999999999999999998
Q ss_pred HhC------CCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCC----------------------------------
Q 007684 217 KSF------GIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESG---------------------------------- 255 (593)
Q Consensus 217 ~~~------g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g---------------------------------- 255 (593)
.+. +-.|+ ..++..+...|.+.|+.++|.+.+++..+..
T Consensus 154 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (283)
T 3edt_B 154 LEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP 233 (283)
T ss_dssp HHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC---
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH
Confidence 763 11343 4678889999999999999999999887530
Q ss_pred -------------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 256 -------------VVPE-EPELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 256 -------------~~p~-~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
..|+ ...+..+..+|...|++++|..++++..+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 234 YGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp ---------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1122 34577888899999999999999988765
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.75 E-value=1e-07 Score=92.56 Aligned_cols=195 Identities=11% Similarity=-0.073 Sum_probs=153.3
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL 146 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll 146 (593)
..+...|...|++++|...+.+.+ ...+.....+..+...|...|++++|+..|+++.+.. +.+...+..+-
T Consensus 47 ~~l~~~~~~~~~~~~A~~~~~~al-------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la 118 (275)
T 1xnf_A 47 YERGVLYDSLGLRALARNDFSQAL-------AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRG 118 (275)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-------HHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHH-------HcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHH
Confidence 778889999999999999997666 3345567789999999999999999999999998863 22456777777
Q ss_pred HHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcc
Q 007684 147 YVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLR 226 (593)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 226 (593)
.++... |++++|.+.|+++.+.. |+.......+..+...|++++|...+++..... .++..
T Consensus 119 ~~~~~~----------------g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 179 (275)
T 1xnf_A 119 IALYYG----------------GRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQW 179 (275)
T ss_dssp HHHHHT----------------TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCST
T ss_pred HHHHHh----------------ccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchH
Confidence 777775 59999999999998754 444455556666677899999999998887643 23444
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007684 227 SYGPALFGFCKLGNTDKAYEVDAHMGESGVV--P-EEPELSALLKLSVDAKKVDKVYEILHRLRTL 289 (593)
Q Consensus 227 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p-~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~ 289 (593)
.+. ++..+...++.++|.+.+++....... | +...+..+...|...|+.++|...+++..+.
T Consensus 180 ~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 180 GWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 444 777888888999999999988643311 1 1466888999999999999999999999874
No 51
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.72 E-value=3e-07 Score=82.99 Aligned_cols=161 Identities=11% Similarity=-0.024 Sum_probs=134.1
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL 146 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll 146 (593)
..+...+...|++++|...+.+.+ ...+.....+..+...+...|++++|..+++++.+.. +.+...+..+.
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a 83 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVY-------DADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLG 83 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTC-------CTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHH-------HhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 556677888999999999998777 3344556779999999999999999999999988763 23566676666
Q ss_pred HHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcc
Q 007684 147 YVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLR 226 (593)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 226 (593)
..+... |++++|.+.|+++.... +.+...+..+...+...|++++|.+.+++..+..- .+..
T Consensus 84 ~~~~~~----------------~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~ 145 (186)
T 3as5_A 84 LTYVQV----------------QKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGK 145 (186)
T ss_dssp HHHHHH----------------TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHH
T ss_pred HHHHHh----------------cCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchH
Confidence 677665 59999999999998765 56788999999999999999999999999987532 3467
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007684 227 SYGPALFGFCKLGNTDKAYEVDAHMGE 253 (593)
Q Consensus 227 ty~~li~~~~~~g~~~~A~~l~~~m~~ 253 (593)
++..+...|.+.|+.++|.+.+++..+
T Consensus 146 ~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 146 VHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888899999999999999999998864
No 52
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.70 E-value=4.3e-07 Score=88.03 Aligned_cols=158 Identities=15% Similarity=0.044 Sum_probs=117.6
Q ss_pred HcCCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC---
Q 007684 115 SKRGDVFEALRLYDDARSN-------GITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD--- 184 (593)
Q Consensus 115 ~~~g~~~~A~~l~~~m~~~-------g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~--- 184 (593)
...|++++|+.+|++..+. .......++..+-..|... |++++|.+.|++....
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------g~~~~A~~~~~~al~~~~~ 75 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQ----------------NKYKEAAHLLNDALAIREK 75 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc----------------ccHHHHHHHHHHHHHHHHH
Confidence 4456777777777766542 1122344555555566665 6999999999988754
Q ss_pred ---CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007684 185 ---KV-DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSF------GIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGE 253 (593)
Q Consensus 185 ---g~-~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 253 (593)
+- +....++..+...|...|++++|.+.+++.... .-.|+ ..+|..+...|...|++++|.+.+++...
T Consensus 76 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 155 (283)
T 3edt_B 76 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALE 155 (283)
T ss_dssp HTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22 233568999999999999999999999998753 11233 57888899999999999999999999876
Q ss_pred C------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 254 S------GVVPE-EPELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 254 ~------g~~p~-~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
. +-.|+ ...+..+..+|...|++++|..++++..+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 156 IYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4 22333 45688899999999999999999999876
No 53
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.69 E-value=4.6e-07 Score=90.42 Aligned_cols=187 Identities=12% Similarity=0.093 Sum_probs=147.6
Q ss_pred cCCCc-------ccCCCCcccccchHHhhhh-cCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HH-HHHH
Q 007684 75 KKSTV-------NESSAPNTGTMSNKSKKKA-RRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLS-QH-HYNV 144 (593)
Q Consensus 75 ~~g~~-------~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~-ty~~ 144 (593)
+.|++ ++|...|++.+ . -.+.....|..+...+.+.|++++|..+|+++.+. .|+ .. .|..
T Consensus 69 ~~g~~~~~~~~~~~A~~~~~rAl-------~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~ 139 (308)
T 2ond_A 69 EKGDMNNAKLFSDEAANIYERAI-------STLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQ 139 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHHHHH-------TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHH
T ss_pred hccchhhcccchHHHHHHHHHHH-------HHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHH
Confidence 45776 78888886555 3 23345567999999999999999999999999985 554 32 6777
Q ss_pred HHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHhCCCCC
Q 007684 145 LLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAV-AKEDPEMAFDLVKQMKSFGIPP 223 (593)
Q Consensus 145 ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~-~~g~~~~A~~l~~~m~~~g~~p 223 (593)
+...+.+. |++++|.++|++..+.. +++...|...+.... ..|+.++|.++|++..+. .|
T Consensus 140 ~~~~~~~~----------------~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--~p 200 (308)
T 2ond_A 140 YMKFARRA----------------EGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YG 200 (308)
T ss_dssp HHHHHHHH----------------HCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HT
T ss_pred HHHHHHHh----------------cCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 77776664 69999999999999865 445555654444432 379999999999999773 24
Q ss_pred C-cccHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007684 224 K-LRSYGPALFGFCKLGNTDKAYEVDAHMGESG-VVP--EEPELSALLKLSVDAKKVDKVYEILHRLRTL 289 (593)
Q Consensus 224 ~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p--~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~ 289 (593)
+ ...|..++..+.+.|+.++|..+|++..... +.| ....|..++..+.+.|+.++|..+++++.+.
T Consensus 201 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 201 DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4 5778888999999999999999999999863 555 4667999999999999999999999998773
No 54
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.69 E-value=1e-07 Score=101.44 Aligned_cols=200 Identities=9% Similarity=-0.057 Sum_probs=159.5
Q ss_pred HHHHHHHhcCCCc-ccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007684 67 GLCTLAFSKKSTV-NESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVL 145 (593)
Q Consensus 67 ~~li~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~l 145 (593)
..+-..|...|++ ++|+..|.+.+ ...+.....+..+-..|.+.|++++|+..|++..+. .|+...+..+
T Consensus 106 ~~lg~~~~~~g~~~~~A~~~~~~al-------~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~l 176 (474)
T 4abn_A 106 MLKGKALNVTPDYSPEAEVLLSKAV-------KLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNL 176 (474)
T ss_dssp HHHHHHHTSSSSCCHHHHHHHHHHH-------HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHH
T ss_pred HHHHHHHHhccccHHHHHHHHHHHH-------hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHH
Confidence 7777889999999 99999997766 334556778999999999999999999999999987 5776666665
Q ss_pred HHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------CChHHHHHHHHHHH
Q 007684 146 LYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAK--------EDPEMAFDLVKQMK 217 (593)
Q Consensus 146 l~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~--------g~~~~A~~l~~~m~ 217 (593)
-.++..... .....+.|++++|++.|++..+.. +-+...+..+..+|... |++++|.+.|++..
T Consensus 177 g~~~~~~~~-------~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al 248 (474)
T 4abn_A 177 SMVLRQLQT-------DSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAE 248 (474)
T ss_dssp HHHHTTCCC-------SCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcc-------CChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 556655300 000111269999999999998875 55788999999999999 99999999999998
Q ss_pred hCCCCC----CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007684 218 SFGIPP----KLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286 (593)
Q Consensus 218 ~~g~~p----~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m 286 (593)
+. .| +...|..+..+|.+.|++++|.+.|++..+..- -+...+..+..++...|+.++|.+.+.++
T Consensus 249 ~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 249 KV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred Hh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 74 36 467899999999999999999999999886431 24456888888999999999888766554
No 55
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.67 E-value=4.7e-07 Score=93.30 Aligned_cols=217 Identities=10% Similarity=0.090 Sum_probs=169.2
Q ss_pred Cccccch--HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHCCCC
Q 007684 60 FSADLTT--GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGD-VFEALRLYDDARSNGIT 136 (593)
Q Consensus 60 ~~~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~ 136 (593)
+.|+... ..+-..+.+.|++++|...+.+.+ ...+.....|+.+-..+.+.|+ +++|+..|+++.+..-.
T Consensus 92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al-------~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~ 164 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAI-------ELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK 164 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHH-------HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHH-------HhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC
Confidence 3344444 667778889999999999997777 4556677789999999999996 99999999999987422
Q ss_pred CCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007684 137 LSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQM 216 (593)
Q Consensus 137 p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m 216 (593)
+...|+.+-.++... |++++|++.|+++.+.. +-+..+|..+..++...|++++|+..++++
T Consensus 165 -~~~a~~~~g~~~~~~----------------g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~a 226 (382)
T 2h6f_A 165 -NYQVWHHRRVLVEWL----------------RDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQL 226 (382)
T ss_dssp -CHHHHHHHHHHHHHH----------------TCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHc----------------cCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 566777666667665 59999999999999876 568889999999999999999999999999
Q ss_pred HhCCCCCC-cccHHHHHHHHHh-cCChhHH-----HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHH
Q 007684 217 KSFGIPPK-LRSYGPALFGFCK-LGNTDKA-----YEVDAHMGESGVVP-EEPELSALLKLSVDAK--KVDKVYEILHRL 286 (593)
Q Consensus 217 ~~~g~~p~-~~ty~~li~~~~~-~g~~~~A-----~~l~~~m~~~g~~p-~~~t~~~Ll~~~~~~g--~~~~a~~~l~~m 286 (593)
.+.. |+ ...|+.+..+|.+ .|..++| ++.|++..+.. | +...|..+..++...| +.++|.+.+.++
T Consensus 227 l~l~--P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~--P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 227 LKED--VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred HHhC--CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 9844 54 6789999999999 6666888 47788877533 4 4566888888888888 689999999887
Q ss_pred HHccCCCCHHHHHHHHHHHhc
Q 007684 287 RTLVRQVSESTFKIIEDWFDS 307 (593)
Q Consensus 287 ~~~~~~~~~~t~~~l~~~~~~ 307 (593)
+ ....+...+..+...|..
T Consensus 303 -~-~~p~~~~al~~La~~~~~ 321 (382)
T 2h6f_A 303 -Q-PSHSSPYLIAFLVDIYED 321 (382)
T ss_dssp -T-TTCCCHHHHHHHHHHHHH
T ss_pred -c-cCCCCHHHHHHHHHHHHH
Confidence 2 223344555666666643
No 56
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.65 E-value=8.7e-07 Score=98.79 Aligned_cols=162 Identities=14% Similarity=0.078 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHH
Q 007684 104 EGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLS-QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMI 182 (593)
Q Consensus 104 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~ 182 (593)
...|+.|-..|.+.|++++|++.|++..+. .|+ ..+|+.|-.+|.+. |++++|++.|++..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~----------------g~~~eA~~~~~~Al 70 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQ----------------GKLQEALMHYKEAI 70 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHH
Confidence 345999999999999999999999999877 444 56676666677775 69999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-H
Q 007684 183 TDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE-E 260 (593)
Q Consensus 183 ~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~ 260 (593)
+.. +-+..+|..+..++.+.|++++|.+.|++..+. .|+ ...|+.+..+|.+.|++++|.+.|++..+.. |+ .
T Consensus 71 ~l~-P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~--P~~~ 145 (723)
T 4gyw_A 71 RIS-PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK--PDFP 145 (723)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCh
Confidence 765 456789999999999999999999999999873 466 5789999999999999999999999988643 54 5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 261 PELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 261 ~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
..+..|..+|...|++++|.+.++++.+
T Consensus 146 ~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 146 DAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 6689999999999999999998888765
No 57
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.64 E-value=5.6e-07 Score=81.95 Aligned_cols=161 Identities=12% Similarity=0.017 Sum_probs=133.1
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL 146 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll 146 (593)
..+-..|.+.|++++|...|++.+ ...+.....+..+...|.+.|++++|+..+......... +...+..+-
T Consensus 9 ~~lG~~~~~~g~~~~A~~~~~~al-------~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ 80 (184)
T 3vtx_A 9 MDIGDKKRTKGDFDGAIRAYKKVL-------KADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILG 80 (184)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH-------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-------HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHH
Confidence 667778999999999999997776 444566778999999999999999999999998876322 344444444
Q ss_pred HHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-c
Q 007684 147 YVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-L 225 (593)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~ 225 (593)
..+... ++.+.|.+.+.+..... +-+..++..+...+.+.|++++|.+.|++..+.. |+ .
T Consensus 81 ~~~~~~----------------~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~--p~~~ 141 (184)
T 3vtx_A 81 SANFMI----------------DEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK--PGFI 141 (184)
T ss_dssp HHHHHT----------------TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH
T ss_pred HHHHHc----------------CCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc--chhh
Confidence 455554 58999999999988765 5678889999999999999999999999998743 54 5
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 007684 226 RSYGPALFGFCKLGNTDKAYEVDAHMGES 254 (593)
Q Consensus 226 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 254 (593)
.+|..+...|.+.|+.++|.+.|++..+.
T Consensus 142 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 142 RAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 78999999999999999999999998763
No 58
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.63 E-value=3.8e-07 Score=88.47 Aligned_cols=195 Identities=7% Similarity=-0.081 Sum_probs=149.9
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--HHHHHH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLS--QHHYNV 144 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~ty~~ 144 (593)
......+...|++++|...+.+.+ ...+.....+..+...|...|++++|+..|+++.+.+-.++ ...|..
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l-------~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 79 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLE-------AKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEY 79 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHH-------HTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHH-------HhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHH
Confidence 345567889999999999997666 23333444688888899999999999999999988542222 234666
Q ss_pred HHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 007684 145 LLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK 224 (593)
Q Consensus 145 ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 224 (593)
+-..+... |++++|.+.|++..+.. +.+..++..+...|...|++++|.+.+++..+. .|+
T Consensus 80 lg~~~~~~----------------~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~ 140 (272)
T 3u4t_A 80 YGKILMKK----------------GQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTT 140 (272)
T ss_dssp HHHHHHHT----------------TCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCC
T ss_pred HHHHHHHc----------------ccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCC
Confidence 66667665 59999999999998865 456688999999999999999999999998775 354
Q ss_pred -cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHc
Q 007684 225 -LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE-EPELSALLKLSVDAKK---VDKVYEILHRLRTL 289 (593)
Q Consensus 225 -~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~Ll~~~~~~g~---~~~a~~~l~~m~~~ 289 (593)
...|..+...+...+++++|.+.|++..+.. |+ ...+..+..++...|+ .++|...+++..+.
T Consensus 141 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 141 DPKVFYELGQAYYYNKEYVKADSSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 4566666624445569999999999998643 43 5667778888888887 88888888888764
No 59
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.63 E-value=1.7e-06 Score=86.16 Aligned_cols=169 Identities=11% Similarity=0.068 Sum_probs=127.3
Q ss_pred CCCCHHHHHHHHHHHH-------cCCCH-------HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCCCCCCCCCCc
Q 007684 100 RESPEGVLRHKLDMCS-------KRGDV-------FEALRLYDDARSNGITL-SQHHYNVLLYVCSCKCGSESSENGDRE 164 (593)
Q Consensus 100 ~~~~~~~~~~li~~~~-------~~g~~-------~~A~~l~~~m~~~g~~p-~~~ty~~ll~~~~~~~~~~~~~~~~~~ 164 (593)
.+.....|..+...+. +.|++ ++|..+|++..+. +.| +...|..+...+...
T Consensus 46 ~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~~------------ 112 (308)
T 2ond_A 46 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEESR------------ 112 (308)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHT------------
T ss_pred cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhc------------
Confidence 3556666777666665 45885 9999999998873 134 456787777777775
Q ss_pred ccccccHHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHH-HhcCCh
Q 007684 165 NDSNLGLKRGFEIFQQMITDKVDPN-EA-TFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF-CKLGNT 241 (593)
Q Consensus 165 ~~~~g~~~~a~~l~~~M~~~g~~p~-~~-ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~-~~~g~~ 241 (593)
|++++|.++|++..+. .|+ .. .|..++..+.+.|++++|..+|++..+..- ++...|....... ...|+.
T Consensus 113 ----~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 113 ----MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp ----TCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCH
T ss_pred ----CCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCH
Confidence 5999999999999974 343 33 899999999999999999999999987432 2333443322221 236999
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007684 242 DKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289 (593)
Q Consensus 242 ~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~ 289 (593)
++|.++|++..+.. .-+...|..++..+.+.|+.++|..+|++..+.
T Consensus 186 ~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 186 SVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999999987642 125677899999999999999999999998774
No 60
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.60 E-value=5.1e-06 Score=78.40 Aligned_cols=153 Identities=12% Similarity=-0.012 Sum_probs=124.3
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHH
Q 007684 103 PEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMI 182 (593)
Q Consensus 103 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~ 182 (593)
++..+..+-..+.+.|++++|+..|++..+..-.++...+..+-.++... |++++|++.|++..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~----------------~~~~~A~~~~~~al 69 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNI----------------KKYKEAADYFDIAI 69 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHh----------------hcHHHHHHHHHHHH
Confidence 45678888889999999999999999998875436776666655566665 69999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-c-------ccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 007684 183 TDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-L-------RSYGPALFGFCKLGNTDKAYEVDAHMGES 254 (593)
Q Consensus 183 ~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~-------~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 254 (593)
+.. +-+..++..+...+...|++++|.+.+++..+.. |+ . ..|..+-..+.+.|+.++|.+.|++..+.
T Consensus 70 ~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 70 KKN-YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HTT-CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HhC-cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 765 4466789999999999999999999999998732 54 2 45777888899999999999999999854
Q ss_pred CCCCC---HHHHHHHHHHHHhcCCH
Q 007684 255 GVVPE---EPELSALLKLSVDAKKV 276 (593)
Q Consensus 255 g~~p~---~~t~~~Ll~~~~~~g~~ 276 (593)
.|+ ...+..+..+|...|..
T Consensus 147 --~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 147 --TSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp --SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCcccHHHHHHHHHHHHHHHHH
Confidence 466 35577888888887776
No 61
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.59 E-value=1.8e-06 Score=73.06 Aligned_cols=127 Identities=14% Similarity=0.095 Sum_probs=58.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCC
Q 007684 107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV 186 (593)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~ 186 (593)
+..+...+...|++++|..+|+++.+.+ +.+...+..+...+... |++++|.++|+++...+
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~----------------~~~~~A~~~~~~~~~~~- 65 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ----------------GDYDEAIEYYQKALELD- 65 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH----------------TCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHh----------------cCHHHHHHHHHHHHHHC-
Confidence 3444455555555555555555554432 11333344433333332 35555555555554433
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 007684 187 DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMG 252 (593)
Q Consensus 187 ~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~ 252 (593)
+.+...+..+...+...|++++|.++++++.+... .+..++..+...|.+.|+.++|.+.++++.
T Consensus 66 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 23344444555555555555555555555444221 123334444444444444444444444443
No 62
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.56 E-value=4e-07 Score=101.55 Aligned_cols=165 Identities=8% Similarity=0.027 Sum_probs=139.1
Q ss_pred ccccch--HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-
Q 007684 61 SADLTT--GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITL- 137 (593)
Q Consensus 61 ~~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p- 137 (593)
.|+... +.|-..|.+.|++++|+..|++.+ +..+.....|+.+-.+|.+.|++++|+..|++..+. .|
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl-------~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~ 75 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKAL-------EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPT 75 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Confidence 344444 888889999999999999997776 444566778999999999999999999999999876 44
Q ss_pred CHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007684 138 SQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMK 217 (593)
Q Consensus 138 ~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~ 217 (593)
+...|+.|-.++... |++++|++.|++..+.. +-+..+|+.+..+|.+.|++++|.+.|++..
T Consensus 76 ~~~a~~nLg~~l~~~----------------g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al 138 (723)
T 4gyw_A 76 FADAYSNMGNTLKEM----------------QDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTAL 138 (723)
T ss_dssp CHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456777776677776 69999999999998765 4567899999999999999999999999998
Q ss_pred hCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007684 218 SFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGE 253 (593)
Q Consensus 218 ~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 253 (593)
+ +.|+ ...|..+..+|...|++++|.+.+++..+
T Consensus 139 ~--l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 139 K--LKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp H--HCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred H--hCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 7 3476 57899999999999999999998888753
No 63
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.54 E-value=2.8e-06 Score=71.80 Aligned_cols=117 Identities=11% Similarity=0.066 Sum_probs=101.0
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 007684 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVD 248 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 248 (593)
|++++|.++|+++.+.. +.+..++..+...+...|++++|..+++++...+- .+...+..+...+...|++++|.+.+
T Consensus 15 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~ 92 (136)
T 2fo7_A 15 GDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYY 92 (136)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHhcCHHHHHHHH
Confidence 59999999999998765 45778899999999999999999999999987542 34567888999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 249 AHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 249 ~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
+++.... ..+...+..+...+...|+.++|...++++.+
T Consensus 93 ~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 93 QKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 9998654 23567788899999999999999999999876
No 64
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.54 E-value=1.8e-06 Score=91.85 Aligned_cols=167 Identities=13% Similarity=-0.026 Sum_probs=128.7
Q ss_pred CCCHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHH
Q 007684 101 ESPEGVLRHKLDMCSKRGDV-FEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQ 179 (593)
Q Consensus 101 ~~~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~ 179 (593)
......+..+-..+...|++ ++|++.|++..+.. +-+...|..+-.+|... |++++|.+.|+
T Consensus 99 ~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~----------------g~~~~A~~~~~ 161 (474)
T 4abn_A 99 QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKK----------------GDVTSAHTCFS 161 (474)
T ss_dssp CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH----------------TCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHc----------------CCHHHHHHHHH
Confidence 34556678888888888998 99999998887763 12456666666666665 58899999998
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhc---------CChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhc--------CCh
Q 007684 180 QMITDKVDPNEATFTSVARLAVAK---------EDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKL--------GNT 241 (593)
Q Consensus 180 ~M~~~g~~p~~~ty~~li~~~~~~---------g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~--------g~~ 241 (593)
+..+.. |+..++..+...+... |++++|.+.+++..+.. |+ ...|..+..+|... |++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 888764 6678888888888888 88899999998887743 44 56788888888888 888
Q ss_pred hHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 242 DKAYEVDAHMGESGVV--PEEPELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 242 ~~A~~l~~~m~~~g~~--p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
++|.+.|++..+..-. -+...|..+..+|...|++++|.+.|++..+
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999988888764310 2667788888888889999999888888766
No 65
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.51 E-value=1e-06 Score=90.69 Aligned_cols=210 Identities=11% Similarity=0.059 Sum_probs=163.8
Q ss_pred CCChhhHHhhcCCccccch--HHHHHHHhcCCC-cccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHH
Q 007684 48 FTKPITDIKQNRFSADLTT--GLCTLAFSKKST-VNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEAL 124 (593)
Q Consensus 48 ~~~~~~~m~~~g~~~~~~~--~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 124 (593)
+...+....+ +.|+..+ +.+-.+|...|+ +++|+..+.+.+ ...+.....|+.+-.++.+.|++++|+
T Consensus 116 Al~~~~~al~--l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al-------~l~P~~~~a~~~~g~~~~~~g~~~eAl 186 (382)
T 2h6f_A 116 AFKLTRDAIE--LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAII-------EEQPKNYQVWHHRRVLVEWLRDPSQEL 186 (382)
T ss_dssp HHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH-------HHCTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred HHHHHHHHHH--hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHH-------HHCCCCHHHHHHHHHHHHHccCHHHHH
Confidence 3344444433 3455555 778888999997 999999997777 455667778999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-c
Q 007684 125 RLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVA-K 203 (593)
Q Consensus 125 ~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~-~ 203 (593)
..|+++.+..- -+...|..+-.++... |++++|++.|+++.+.. +-+..+|+.+..++.. .
T Consensus 187 ~~~~kal~ldP-~~~~a~~~lg~~~~~~----------------g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~ 248 (382)
T 2h6f_A 187 EFIADILNQDA-KNYHAWQHRQWVIQEF----------------KLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTT 248 (382)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHH----------------TCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCc-cCHHHHHHHHHHHHHc----------------CChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhc
Confidence 99999998742 2667777766677665 58999999999999877 5678899999999999 6
Q ss_pred CChHHH-----HHHHHHHHhCCCCCC-cccHHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-
Q 007684 204 EDPEMA-----FDLVKQMKSFGIPPK-LRSYGPALFGFCKLG--NTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAK- 274 (593)
Q Consensus 204 g~~~~A-----~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g- 274 (593)
|..++| ++.+++... +.|+ ...|+.+...+.+.| +.++|.+.+.++ + .-..+...+..|..+|.+.|
T Consensus 249 ~~~~eA~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~-~~p~~~~al~~La~~~~~~~~ 324 (382)
T 2h6f_A 249 GYNDRAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q-PSHSSPYLIAFLVDIYEDMLE 324 (382)
T ss_dssp CSCSHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T-TTCCCHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c-cCCCCHHHHHHHHHHHHHHhc
Confidence 665888 488888876 3465 567888888888888 689999999988 3 23345667889999998864
Q ss_pred --------CHHHHHHHHHHH-HH
Q 007684 275 --------KVDKVYEILHRL-RT 288 (593)
Q Consensus 275 --------~~~~a~~~l~~m-~~ 288 (593)
..++|.++++++ .+
T Consensus 325 ~~~~~~~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 325 NQCDNKEDILNKALELCEILAKE 347 (382)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHT
T ss_pred ccccchHHHHHHHHHHHHHHHHH
Confidence 358999999998 44
No 66
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.49 E-value=3.3e-07 Score=94.86 Aligned_cols=275 Identities=9% Similarity=-0.025 Sum_probs=181.3
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCCC
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPE----GVLRHKLDMCSKRGDVFEALRLYDDARSN----GITLS 138 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~ 138 (593)
..+-..+...|++++|...+.+.+ .....+. ..+..+...|...|++++|+..|++..+. +-.|.
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al-------~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAI-------QAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-------HHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHH-------HhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 455667889999999999997766 1122232 35888899999999999999999987643 22222
Q ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHhcCC-------
Q 007684 139 -QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD----K-VDPNEATFTSVARLAVAKED------- 205 (593)
Q Consensus 139 -~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~----g-~~p~~~ty~~li~~~~~~g~------- 205 (593)
...+..+-..|... |++++|.+.|++.... + .+....++..+...|...|+
T Consensus 125 ~~~~~~~l~~~~~~~----------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 188 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVM----------------GRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNP 188 (411)
T ss_dssp HHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHC----------------CCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccc
Confidence 23444444466654 6999999999987653 1 12234578889999999999
Q ss_pred ----------hHHHHHHHHHHHh----CCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCC----HHHHHH
Q 007684 206 ----------PEMAFDLVKQMKS----FGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGV-VPE----EPELSA 265 (593)
Q Consensus 206 ----------~~~A~~l~~~m~~----~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ 265 (593)
+++|.+.+++..+ .+-.|. ..++..+...|...|++++|.+.+++..+..- .++ ...+..
T Consensus 189 ~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 268 (411)
T 4a1s_A 189 GKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSN 268 (411)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 9999999988753 122122 35788899999999999999999998864211 112 236888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHccCCC-C----HHHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCcccccccc
Q 007684 266 LLKLSVDAKKVDKVYEILHRLRTLVRQV-S----ESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWL 340 (593)
Q Consensus 266 Ll~~~~~~g~~~~a~~~l~~m~~~~~~~-~----~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~ 340 (593)
+..+|...|++++|...+++..+..... + ..++..+...+...+..+.+.. .+.+++...
T Consensus 269 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-----~~~~al~~~---------- 333 (411)
T 4a1s_A 269 LGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIE-----YHNRHLAIA---------- 333 (411)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH-----HHHHHHHHH----------
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHH-----HHHHHHHHH----------
Confidence 9999999999999999999886632211 1 1223333333322222211111 111111100
Q ss_pred cCCceEEEEecccCCCCcCcccccccccCCCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHh
Q 007684 341 GSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGR 404 (593)
Q Consensus 341 ~~~~~~v~~~~i~~~g~c~~~~~al~~~~l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~ 404 (593)
......+.....+..+...|...|+.++|.+.|++.++.
T Consensus 334 -------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 334 -------------------------QELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp -------------------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------------------------HHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 000011234556777788899999999999999998874
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.47 E-value=2.4e-06 Score=87.75 Aligned_cols=233 Identities=8% Similarity=-0.047 Sum_probs=157.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC
Q 007684 110 KLDMCSKRGDVFEALRLYDDARSNG-ITLS----QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD 184 (593)
Q Consensus 110 li~~~~~~g~~~~A~~l~~~m~~~g-~~p~----~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~ 184 (593)
.-..+...|++++|+..|++..+.- -.++ ..+|..+-..|... |+.++|.+.+++..+.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~----------------~~~~~A~~~~~~al~~ 172 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYM----------------KQTYFSMDYARQAYEI 172 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHH
Confidence 4556788899999999999987641 1122 23444444566665 6999999999987652
Q ss_pred --CC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007684 185 --KV----DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSF----GIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGE 253 (593)
Q Consensus 185 --g~----~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 253 (593)
.. .....+++.+...|...|++++|.+.+++..+. +-.+. ..+|..+...|...|+.++|.+.+++..+
T Consensus 173 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 252 (383)
T 3ulq_A 173 YKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA 252 (383)
T ss_dssp HHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11 112357889999999999999999999998642 11111 24788899999999999999999999875
Q ss_pred C----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCC-CHHH---HHHHHHHHhcchhhhhccccchhhhHH
Q 007684 254 S----GV-VPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV-SEST---FKIIEDWFDSVDAAEIGVLNWDVSKVR 324 (593)
Q Consensus 254 ~----g~-~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~-~~~t---~~~l~~~~~~~~~~~~~~~~~d~~~~~ 324 (593)
. +. .....++..+..+|.+.|+.++|...+++..+..... ++.. +..+-..+...+..
T Consensus 253 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~------------- 319 (383)
T 3ulq_A 253 VFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDE------------- 319 (383)
T ss_dssp HHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCH-------------
T ss_pred HHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcH-------------
Confidence 2 33 2335568899999999999999999999886632211 2211 22222222211110
Q ss_pred HhhhcCCCcccccccccCCceEEEEecccCCCCcCcccccccccC---CCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHH
Q 007684 325 EGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCID---IDPRETENFASSLSNLACQREVRSDFNKFQEW 401 (593)
Q Consensus 325 ~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~---l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~ 401 (593)
....+++..+. ..+.....+..+...|...|+.++|.+.|++.
T Consensus 320 ----------------------------------~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~a 365 (383)
T 3ulq_A 320 ----------------------------------EAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKV 365 (383)
T ss_dssp ----------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----------------------------------HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 01122222222 23344556677778899999999999999998
Q ss_pred HHhc
Q 007684 402 LGRH 405 (593)
Q Consensus 402 l~~~ 405 (593)
++..
T Consensus 366 l~~~ 369 (383)
T 3ulq_A 366 EQVR 369 (383)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8743
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.40 E-value=1.6e-06 Score=86.09 Aligned_cols=276 Identities=12% Similarity=0.010 Sum_probs=178.6
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCCC
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESP----EGVLRHKLDMCSKRGDVFEALRLYDDARSN----GITLS 138 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~ 138 (593)
...-..+...|++++|...+.+.+. ..+.+ ...+..+...+...|++++|.+++++..+. +-.|.
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~-------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQ-------VGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 81 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH-------HCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHh-------hCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHH
Confidence 3445578889999999999977661 12223 245888999999999999999999986543 22222
Q ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCC-------
Q 007684 139 -QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV-DPN----EATFTSVARLAVAKED------- 205 (593)
Q Consensus 139 -~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~-~p~----~~ty~~li~~~~~~g~------- 205 (593)
..++..+-..+... |++++|.+.|++..+... .++ ..++..+...+...|+
T Consensus 82 ~~~~~~~l~~~~~~~----------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 145 (338)
T 3ro2_A 82 EAKASGNLGNTLKVL----------------GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGP 145 (338)
T ss_dssp HHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSC
T ss_pred HHHHHHHHHHHHHHc----------------cCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchh
Confidence 33444444566654 699999999998764210 122 3478889999999999
Q ss_pred -------------hHHHHHHHHHHHh----CCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHHH
Q 007684 206 -------------PEMAFDLVKQMKS----FGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGES----GVVP-EEPE 262 (593)
Q Consensus 206 -------------~~~A~~l~~~m~~----~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t 262 (593)
+++|.+.+++... .+-.|. ..++..+...|...|++++|.+.+++..+. +..+ ....
T Consensus 146 ~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 225 (338)
T 3ro2_A 146 QDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRA 225 (338)
T ss_dssp C----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 9999999988753 121122 357888889999999999999999987642 1111 1236
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHccCCC-C----HHHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCccccc
Q 007684 263 LSALLKLSVDAKKVDKVYEILHRLRTLVRQV-S----ESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQ 337 (593)
Q Consensus 263 ~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~-~----~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~ 337 (593)
+..+...+...|+.++|...+++..+..... + ..++..+...+...+..+.+. ..+.+++...
T Consensus 226 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-----~~~~~a~~~~------- 293 (338)
T 3ro2_A 226 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAI-----DYHLKHLAIA------- 293 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH-----HHHHHHHHHH-------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHH-----HHHHHHHHHH-------
Confidence 8888899999999999999999886532211 1 112233333332222211111 1111111100
Q ss_pred ccccCCceEEEEecccCCCCcCcccccccccCCCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhc
Q 007684 338 GWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRH 405 (593)
Q Consensus 338 ~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~ 405 (593)
....-.+.....+..+...|...|+.++|.+.|++.++..
T Consensus 294 ----------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 294 ----------------------------QELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp ----------------------------HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred ----------------------------HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 0000112334567777788999999999999999988743
No 69
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.38 E-value=8.9e-06 Score=85.71 Aligned_cols=291 Identities=10% Similarity=-0.071 Sum_probs=178.1
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhh--hcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-----C-CCC-
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKK--ARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSN-----G-ITL- 137 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g-~~p- 137 (593)
|.|-..+...|+.++|.+.+.+.+....... ........+|+.+-..|...|++++|...+++..+. + ..+
T Consensus 55 n~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~ 134 (472)
T 4g1t_A 55 NLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIE 134 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchh
Confidence 8888899999999999999977652211111 112333456999999999999999999999987643 1 112
Q ss_pred CHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HhcCChHHHHHHHH
Q 007684 138 SQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLA---VAKEDPEMAFDLVK 214 (593)
Q Consensus 138 ~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~---~~~g~~~~A~~l~~ 214 (593)
...+|+.+-.++...+ .+++++|.+.|++..+.. +-+...+..+..++ ...++.++|++.++
T Consensus 135 ~~~~~~~~g~~~~~~~--------------~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~ 199 (472)
T 4g1t_A 135 SPELDCEEGWTRLKCG--------------GNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLR 199 (472)
T ss_dssp CHHHHHHHHHHHHHHC--------------TTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHH
T ss_pred hHHHHHHHHHHHHHHc--------------cccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 2344443322222211 148999999999988765 33555565555553 45678889999999
Q ss_pred HHHhCCCCCC-cccHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007684 215 QMKSFGIPPK-LRSYGPALFGFCK----LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289 (593)
Q Consensus 215 ~m~~~g~~p~-~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~ 289 (593)
+..+. .|+ ..++..+...+.. .|+.++|.+.+++..... +.+...+..+...|...|+.++|...+++..+.
T Consensus 200 ~al~l--~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 276 (472)
T 4g1t_A 200 QAIRL--NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY 276 (472)
T ss_dssp HHHHH--CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhc--CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 88774 354 4556655555554 467789999999887643 235566889999999999999999999998773
Q ss_pred cCCCC-HHHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCcccccccccCCceEEEEecccCCCCcCcccccccc-
Q 007684 290 VRQVS-ESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVC- 367 (593)
Q Consensus 290 ~~~~~-~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~- 367 (593)
.|+ ...+..+-..|..................... ....+.++..
T Consensus 277 --~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~A~~~~ 323 (472)
T 4g1t_A 277 --IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKL-------------------------------LELIGHAVAHL 323 (472)
T ss_dssp --STTCHHHHHHHHHHHHHHHHHHHHC------CHHHH-------------------------------HHHHHHHHHHH
T ss_pred --CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-------------------------------HhhHHHHHHHH
Confidence 343 33343333333221110000000000000000 0001111111
Q ss_pred ---cCCCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhcCCc
Q 007684 368 ---IDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPF 408 (593)
Q Consensus 368 ---~~l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~~~ 408 (593)
+.+.|.....+..+...|...|+.++|++.|++.++...++
T Consensus 324 ~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~ 367 (472)
T 4g1t_A 324 KKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP 367 (472)
T ss_dssp HHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCH
T ss_pred HHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCC
Confidence 11334444556677778889999999999999998865443
No 70
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.36 E-value=1.1e-05 Score=92.95 Aligned_cols=216 Identities=12% Similarity=0.161 Sum_probs=131.2
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 007684 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVD 248 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 248 (593)
|++++|++.|.+- -|...|..++.+|.+.|++++|.+.+...++.. ++....+.++.+|++.+++++..++.
T Consensus 1119 G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI 1190 (1630)
T 1xi4_A 1119 GMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI 1190 (1630)
T ss_pred CCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH
Confidence 6888888888553 467778888889999999999999888766643 44444556888888888887544443
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhhhccccchhhhHHHhhh
Q 007684 249 AHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIV 328 (593)
Q Consensus 249 ~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~ 328 (593)
. .++...|..+...|...|++++|..+|... ..|..+...+...+..+.+-. ...++
T Consensus 1191 ~-------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIE-----aarKA-- 1247 (1630)
T 1xi4_A 1191 N-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVD-----GARKA-- 1247 (1630)
T ss_pred h-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHH-----HHHHh--
Confidence 1 256677777888888888898888888884 366666666655543222111 11111
Q ss_pred cCCCcccccccccCCceEEEEeccc--CCCCcCcccccccccCCCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhcC
Q 007684 329 RGGGGWHGQGWLGSGKWRVERTQID--ENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHG 406 (593)
Q Consensus 329 ~~g~~~~g~~~~~~~~~~v~~~~i~--~~g~c~~~~~al~~~~l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~ 406 (593)
+ +...|.. +....++ .+.....|+.. +.. +...+..++.-|...|.+++|+.+|+.-+.
T Consensus 1248 --~---n~~aWke-----v~~acve~~Ef~LA~~cgl~---Iiv---~~deLeeli~yYe~~G~feEAI~LlE~aL~--- 1308 (1630)
T 1xi4_A 1248 --N---STRTWKE-----VCFACVDGKEFRLAQMCGLH---IVV---HADELEELINYYQDRGYFEELITMLEAALG--- 1308 (1630)
T ss_pred --C---CHHHHHH-----HHHHHhhhhHHHHHHHHHHh---hhc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc---
Confidence 0 0011100 0000000 01111111211 112 234455888889999999999999987664
Q ss_pred CcCeeeeccceecccCC-----CCChhhHHHHHHHHHh
Q 007684 407 PFDAVIDGANVGLVNQH-----NFSFYQLNTVVNRLRQ 439 (593)
Q Consensus 407 ~~d~vidg~nv~~~~~~-----~~~~~~l~~vv~~l~~ 439 (593)
++.++++++..- +.+++.+.+.++.+..
T Consensus 1309 -----LeraH~gmftELaiLyaKy~peklmEhlk~f~~ 1341 (1630)
T 1xi4_A 1309 -----LERAHMGMFTELAILYSKFKPQKMREHLELFWS 1341 (1630)
T ss_pred -----cChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 234444444222 3466777777777776
No 71
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.36 E-value=1.7e-06 Score=88.82 Aligned_cols=203 Identities=9% Similarity=-0.068 Sum_probs=145.6
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-CCC----H
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESP--EGVLRHKLDMCSKRGDVFEALRLYDDARSNGI-TLS----Q 139 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~ 139 (593)
..+...|...|++++|...+.+.+..... . ...+ ...+..+...|...|++++|...+++..+..- .++ .
T Consensus 51 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 127 (406)
T 3sf4_A 51 SQLGNAYFYLHDYAKALEYHHHDLTLART-I--GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEA 127 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH-T--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHh-c--cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchH
Confidence 67778899999999999999776522111 1 1112 23488888999999999999999998765410 012 2
Q ss_pred HHHHHHHHHHHccCCCCCCCCCCCccccccc--------------------HHHHHHHHHHHHh----CCCCC-CHHHHH
Q 007684 140 HHYNVLLYVCSCKCGSESSENGDRENDSNLG--------------------LKRGFEIFQQMIT----DKVDP-NEATFT 194 (593)
Q Consensus 140 ~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~--------------------~~~a~~l~~~M~~----~g~~p-~~~ty~ 194 (593)
.++..+-..|... |+ +++|.+.+++... .+-.| ...++.
T Consensus 128 ~~~~~l~~~~~~~----------------g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 191 (406)
T 3sf4_A 128 RALYNLGNVYHAK----------------GKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFG 191 (406)
T ss_dssp HHHHHHHHHHHHH----------------HHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHc----------------CCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 3455555566554 57 8999998887653 22112 234788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCC-CCC----cccHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCC-HHHHH
Q 007684 195 SVARLAVAKEDPEMAFDLVKQMKSFGI-PPK----LRSYGPALFGFCKLGNTDKAYEVDAHMGES----GVVPE-EPELS 264 (593)
Q Consensus 195 ~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~ty~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~ 264 (593)
.+...+...|++++|.+.+++..+..- .++ ..+|..+...|...|+.++|.+.+++.... +-.+. ..++.
T Consensus 192 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 271 (406)
T 3sf4_A 192 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCY 271 (406)
T ss_dssp HHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHH
Confidence 899999999999999999999864210 111 237888999999999999999999987642 21111 45688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 265 ALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 265 ~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
.+...|...|++++|...+++..+
T Consensus 272 ~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 272 SLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHH
Confidence 889999999999999999988765
No 72
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.32 E-value=1e-05 Score=82.92 Aligned_cols=165 Identities=9% Similarity=-0.084 Sum_probs=122.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC
Q 007684 110 KLDMCSKRGDVFEALRLYDDARSNGI-TLS----QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD 184 (593)
Q Consensus 110 li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~ 184 (593)
.-..+...|++++|+..|+++.+.-- .++ ..++..+-..|... |+.++|.+.+++..+.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~----------------~~~~~A~~~~~~al~~ 170 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHM----------------KQTHVSMYHILQALDI 170 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHc----------------CCcHHHHHHHHHHHHH
Confidence 34456788999999999999876521 122 23444444466665 5999999999987642
Q ss_pred ----C-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007684 185 ----K-VDP-NEATFTSVARLAVAKEDPEMAFDLVKQMKSF----GIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGE 253 (593)
Q Consensus 185 ----g-~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 253 (593)
+ ..+ ...+++.+...|...|++++|.+.+++..+. +-.+. ..++..+...|...|+.++|.+.+++..+
T Consensus 171 ~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 171 YQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp HHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 111 2457889999999999999999999988642 22111 35788899999999999999999999875
Q ss_pred C----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcc
Q 007684 254 S----GVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290 (593)
Q Consensus 254 ~----g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~ 290 (593)
. +......++..+..++.+.|+.++|...+++..+..
T Consensus 251 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 291 (378)
T 3q15_A 251 VSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHI 291 (378)
T ss_dssp HHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 1 222235668889999999999999999999987743
No 73
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.31 E-value=4e-06 Score=82.87 Aligned_cols=203 Identities=10% Similarity=0.021 Sum_probs=138.4
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCCC-HH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESP-EGVLRHKLDMCSKRGDVFEALRLYDDARSN----GITLS-QH 140 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~ 140 (593)
.-....|...|++++|...|.+.+....+ .+.... ...|+.+...|.+.|++++|+..|++..+. |-... ..
T Consensus 41 ~~a~~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 41 VQAATIYRLRKELNLAGDSFLKAADYQKK--AGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHHHHHHTTCTHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 34455688899999999999776622211 111111 335999999999999999999999987654 21111 23
Q ss_pred HHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHH
Q 007684 141 HYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVD-PN----EATFTSVARLAVAKEDPEMAFDLVKQ 215 (593)
Q Consensus 141 ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~-p~----~~ty~~li~~~~~~g~~~~A~~l~~~ 215 (593)
+|+.+-.+|... .|++++|++.|++..+.... .+ ..+++.+...+...|++++|...|++
T Consensus 119 ~~~~lg~~~~~~---------------lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 183 (292)
T 1qqe_A 119 FKFELGEILEND---------------LHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSK 183 (292)
T ss_dssp HHHHHHHHHHHT---------------TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---------------hcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 555555666662 04999999999987653211 11 35788999999999999999999999
Q ss_pred HHhCCCCCCcc------cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH------HHHHHHHHHHH--hcCCHHHHHH
Q 007684 216 MKSFGIPPKLR------SYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEE------PELSALLKLSV--DAKKVDKVYE 281 (593)
Q Consensus 216 m~~~g~~p~~~------ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~------~t~~~Ll~~~~--~~g~~~~a~~ 281 (593)
..+........ .|..+..++...|+.++|...|++..+ +.|+. ..+..|+.++. ..+++++|..
T Consensus 184 al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~ 261 (292)
T 1qqe_A 184 LIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCK 261 (292)
T ss_dssp HHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHH
T ss_pred HHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 98743222221 467788889999999999999999874 22332 13455666664 3456778887
Q ss_pred HHHHHHH
Q 007684 282 ILHRLRT 288 (593)
Q Consensus 282 ~l~~m~~ 288 (593)
.|+++..
T Consensus 262 ~~~~~~~ 268 (292)
T 1qqe_A 262 EFDNFMR 268 (292)
T ss_dssp HHTTSSC
T ss_pred HhccCCc
Confidence 7766533
No 74
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.30 E-value=1.5e-05 Score=83.91 Aligned_cols=287 Identities=9% Similarity=-0.024 Sum_probs=134.2
Q ss_pred cCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 007684 75 KKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLD---MCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSC 151 (593)
Q Consensus 75 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~ 151 (593)
..+++++|...|.+.+ ...+.....+..+.. .+...++.++|++.+++..+.. +.+...+..+-..+..
T Consensus 150 ~~~~y~~A~~~~~kal-------~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~ 221 (472)
T 4g1t_A 150 GGNQNERAKVCFEKAL-------EKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHK 221 (472)
T ss_dssp CTTHHHHHHHHHHHHH-------HHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHH-------HhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHH
Confidence 3456777877777766 222333333333322 2445677777777777766552 1234444433333332
Q ss_pred cCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHH
Q 007684 152 KCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGP 230 (593)
Q Consensus 152 ~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~ 230 (593)
.. ...|+.++|.+++++..... +.+..++..+...|...|++++|.+.+++..+. .|+ ..+|..
T Consensus 222 ~~------------~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~ 286 (472)
T 4g1t_A 222 MR------------EEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQ 286 (472)
T ss_dssp CC------------------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHH
T ss_pred HH------------hhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHH
Confidence 21 11246677777777766554 455667777777777777777777777777653 244 344554
Q ss_pred HHHHHHhc-------------------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccC
Q 007684 231 ALFGFCKL-------------------GNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVR 291 (593)
Q Consensus 231 li~~~~~~-------------------g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~ 291 (593)
+...|... +..++|...+++..+... .+...+..+...|...|++++|.+.|++..+..
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~- 364 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKE- 364 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC-
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC-
Confidence 54444321 234566777766654321 122336666777777777777777777766532
Q ss_pred CCCHHHHHHHHHHHhcchhhhhccccchh--hhHHHhhhcCCCcccccccccCCceEEEEecccCCCCcCcccccccccC
Q 007684 292 QVSESTFKIIEDWFDSVDAAEIGVLNWDV--SKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCID 369 (593)
Q Consensus 292 ~~~~~t~~~l~~~~~~~~~~~~~~~~~d~--~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~ 369 (593)
|+......+...+..... ...+.++. ....+++.-...... + ....... -.-..+.+.
T Consensus 365 -~~~~~~~~~~~~~~~~~~--~~~~~~~~Ai~~y~kal~i~~~~~~---~---------~~~~~~l-----~~~~~~~l~ 424 (472)
T 4g1t_A 365 -LTPVAKQLLHLRYGNFQL--YQMKCEDKAIHHFIEGVKINQKSRE---K---------EKMKDKL-----QKIAKMRLS 424 (472)
T ss_dssp -CCHHHHHHHHHHHHHHHH--HTSSCHHHHHHHHHHHHHSCCCCHH---H---------HHHHHHH-----HHHHHHHHH
T ss_pred -CCChHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHhcCcccHH---H---------HHHHHHH-----HHHHHHHHH
Confidence 333222222111111100 00111111 112222211100000 0 0000000 000011223
Q ss_pred CCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhcC
Q 007684 370 IDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHG 406 (593)
Q Consensus 370 l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~ 406 (593)
..|.+...|..+...|...|+.++|++.|++.++.+.
T Consensus 425 ~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 425 KNGADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HCC-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 4566778888898999999999999999999998654
No 75
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.29 E-value=0.00012 Score=68.85 Aligned_cols=116 Identities=10% Similarity=-0.028 Sum_probs=100.2
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHH
Q 007684 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEV 247 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l 247 (593)
|++++|++.|++..+...+++...+..+..++...|++++|.+.+++..+. .|+ ...|..+...|...|+.++|.+.
T Consensus 21 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~ 98 (228)
T 4i17_A 21 KNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSAAYRDMKNNQEYIAT 98 (228)
T ss_dssp TCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHcccHHHHHHH
Confidence 699999999999988774478888888999999999999999999999874 355 57888899999999999999999
Q ss_pred HHHHHhCCCCCC-H-------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 248 DAHMGESGVVPE-E-------PELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 248 ~~~m~~~g~~p~-~-------~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
+++..+.. |+ . ..|..+-..+...|++++|.+.+++..+
T Consensus 99 ~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 99 LTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp HHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence 99988643 33 3 4577788888999999999999999976
No 76
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.26 E-value=4.1e-05 Score=82.37 Aligned_cols=185 Identities=14% Similarity=0.094 Sum_probs=142.5
Q ss_pred CCCcc-------cCCCCcccccchHHhhhh-cCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-H-HHHHHH
Q 007684 76 KSTVN-------ESSAPNTGTMSNKSKKKA-RRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLS-Q-HHYNVL 145 (593)
Q Consensus 76 ~g~~~-------~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~-~ty~~l 145 (593)
.|+++ +|..++...+ . ..+.....+..++..+.+.|++++|..+|+++.+. .|+ . ..|..+
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al-------~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 362 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAI-------STLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQY 362 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHT-------TTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHH-------HHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHH
Confidence 68877 7777775554 2 23345667999999999999999999999999986 554 2 467777
Q ss_pred HHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHhCCCCCC
Q 007684 146 LYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARL-AVAKEDPEMAFDLVKQMKSFGIPPK 224 (593)
Q Consensus 146 l~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~-~~~~g~~~~A~~l~~~m~~~g~~p~ 224 (593)
...+.+. |++++|.++|++..+.. +.+...|...+.. +...|+.++|..+|++..+.. |+
T Consensus 363 ~~~~~~~----------------~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~ 423 (530)
T 2ooe_A 363 MKFARRA----------------EGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GD 423 (530)
T ss_dssp HHHHHHH----------------HHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TT
T ss_pred HHHHHHh----------------cCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CC
Confidence 7766654 68999999999998764 2233333333222 346899999999999987632 54
Q ss_pred -cccHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 225 -LRSYGPALFGFCKLGNTDKAYEVDAHMGESG-VVPE--EPELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 225 -~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~--~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+......|+.+.+..++.++.+
T Consensus 424 ~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 424 IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6788889999999999999999999998763 3343 45788889988899999999999999876
No 77
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.26 E-value=0.00012 Score=72.22 Aligned_cols=180 Identities=9% Similarity=0.026 Sum_probs=129.0
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEG-VLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVL 145 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~l 145 (593)
-++.++|...|+..... ..+|.. .+..+.. |...+ |+..|++..+.+ .++..++..+
T Consensus 49 ~~~~Rs~iAlg~~~~~~----------------~~~~~~~a~~~la~-~~~~~----a~~~l~~l~~~~-~~~~~~~~~l 106 (310)
T 3mv2_B 49 FYKAKTLLALGQYQSQD----------------PTSKLGKVLDLYVQ-FLDTK----NIEELENLLKDK-QNSPYELYLL 106 (310)
T ss_dssp HHHHHHHHHTTCCCCCC----------------SSSTTHHHHHHHHH-HHTTT----CCHHHHHTTTTS-CCCHHHHHHH
T ss_pred HHHHHHHHHcCCCccCC----------------CCCHHHHHHHHHHH-Hhccc----HHHHHHHHHhcC-CCCcHHHHHH
Confidence 67778999999877532 122332 3444333 33333 788888877665 4565555545
Q ss_pred HHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-
Q 007684 146 LYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV-DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPP- 223 (593)
Q Consensus 146 l~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~-~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p- 223 (593)
-.++... |+.++|++++.+-...|- .-+...+..++..+.+.|+.+.|.+++++|.+. .|
T Consensus 107 a~i~~~~----------------g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d 168 (310)
T 3mv2_B 107 ATAQAIL----------------GDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IED 168 (310)
T ss_dssp HHHHHHH----------------TCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCH
T ss_pred HHHHHHc----------------CCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Ccc
Confidence 5566665 699999999999876663 236678889999999999999999999999873 46
Q ss_pred ----CcccHHHHHHH--HHhcC--ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 224 ----KLRSYGPALFG--FCKLG--NTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 224 ----~~~ty~~li~~--~~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
+..+...+..+ ....| +..+|+.+|+++.+.. |+..+-..|+.++...|++++|.+.++.+.+
T Consensus 169 ~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 169 TVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred ccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555556666 33334 8999999999987543 6655556666689999999999999997654
No 78
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.25 E-value=0.00015 Score=77.11 Aligned_cols=191 Identities=9% Similarity=-0.018 Sum_probs=144.0
Q ss_pred HHHHHHHhc----CCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCC
Q 007684 67 GLCTLAFSK----KSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSK----RGDVFEALRLYDDARSNGITLS 138 (593)
Q Consensus 67 ~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~ 138 (593)
..|-..|.. .+++++|...|.+.. . ..+...+..|-..|.. .++.++|..+|++..+.| +
T Consensus 43 ~~lg~~y~~g~~~~~~~~~A~~~~~~a~-------~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 43 LELGYRYFQGNETTKDLTQAMDWFRRAA-------E--QGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHH-------H--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred HHHHHHHHcCCCCCcCHHHHHHHHHHHH-------H--CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 444445555 677778887774443 1 1355667778888888 899999999999988876 4
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHH
Q 007684 139 QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVA----KEDPEMAFDLVK 214 (593)
Q Consensus 139 ~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~ 214 (593)
...+..|=..|..+. ...++.++|++.|++..+.| +..++..|...|.. .++.++|.+.|+
T Consensus 111 ~~a~~~Lg~~y~~g~------------g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 175 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGN------------GVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYS 175 (490)
T ss_dssp HHHHHHHHHHHHHTS------------SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC------------CCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 455555555666521 01248999999999988876 56778888888887 789999999999
Q ss_pred HHHhCCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHH
Q 007684 215 QMKSFGIPPKLRSYGPALFGFCK----LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVD----AKKVDKVYEILHRL 286 (593)
Q Consensus 215 ~m~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~----~g~~~~a~~~l~~m 286 (593)
+..+.| +...+..+...|.. .++.++|.+.|++..+.| +...+..|...|.. .++.++|..+|++.
T Consensus 176 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a 249 (490)
T 2xm6_A 176 KAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQS 249 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 988764 45677778888887 889999999999988765 55677778888876 78899999999988
Q ss_pred HHcc
Q 007684 287 RTLV 290 (593)
Q Consensus 287 ~~~~ 290 (593)
.+.+
T Consensus 250 ~~~~ 253 (490)
T 2xm6_A 250 AEQG 253 (490)
T ss_dssp HTTT
T ss_pred HHCC
Confidence 7753
No 79
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.25 E-value=3.9e-05 Score=71.43 Aligned_cols=170 Identities=10% Similarity=0.107 Sum_probs=122.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH-HHHHH----------------HHHHHHccCCCCCCCCCCCcccccc
Q 007684 107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQ-HHYNV----------------LLYVCSCKCGSESSENGDRENDSNL 169 (593)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~ty~~----------------ll~~~~~~~~~~~~~~~~~~~~~~g 169 (593)
+-.....+.+.|++++|+..|++..+. .|+. ..|.. +-.+|... |
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~----------------g 68 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKN----------------R 68 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHT----------------T
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHC----------------C
Confidence 344455677899999999999998876 3433 33333 33355554 6
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCC--hhHHHH
Q 007684 170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGN--TDKAYE 246 (593)
Q Consensus 170 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~--~~~A~~ 246 (593)
++++|++.|++..+.. +-+..++..+...+...|++++|...|++..+. .|+ ..+|..+...|...|+ .+.+..
T Consensus 69 ~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~ 145 (208)
T 3urz_A 69 NYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLET 145 (208)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 9999999999998876 557889999999999999999999999999884 365 5678888888876654 344555
Q ss_pred HHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 007684 247 VDAHMGESGVVPEEP--ELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIED 303 (593)
Q Consensus 247 l~~~m~~~g~~p~~~--t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~ 303 (593)
.++... .|+.. .+..+..++...|++++|...|++..+ ..|+......+..
T Consensus 146 ~~~~~~----~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~ 198 (208)
T 3urz_A 146 DYKKLS----SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK 198 (208)
T ss_dssp HHC-------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred HHHHHh----CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 665543 34443 334445566678999999999999976 5677655544443
No 80
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.24 E-value=1.3e-05 Score=82.68 Aligned_cols=241 Identities=10% Similarity=-0.040 Sum_probs=159.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHH
Q 007684 107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQ----HHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMI 182 (593)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~ 182 (593)
+..+-..+...|++++|+.+|+++.+.+.. +. ..|..+-..|... |++++|.+.|++..
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~----------------g~~~~A~~~~~~al 113 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYL----------------GDYNKAMQYHKHDL 113 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHH----------------TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHC----------------CCHHHHHHHHHHHH
Confidence 556777889999999999999999887322 33 3455555566664 69999999999876
Q ss_pred hC----CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC-cccHHHHHHHHHhcCC------------
Q 007684 183 TD----KV-DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSF----GIPPK-LRSYGPALFGFCKLGN------------ 240 (593)
Q Consensus 183 ~~----g~-~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~ty~~li~~~~~~g~------------ 240 (593)
+. +- +....++..+...|...|++++|.+.+++..+. +-.|. ..++..+...|...|+
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~ 193 (411)
T 4a1s_A 114 TLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGD 193 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCH
T ss_pred HHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhh
Confidence 53 21 223457888999999999999999999988642 11122 4578889999999999
Q ss_pred -----hhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCC-CCHH----HHHHHHHHH
Q 007684 241 -----TDKAYEVDAHMGES----GVVPE-EPELSALLKLSVDAKKVDKVYEILHRLRTLVRQ-VSES----TFKIIEDWF 305 (593)
Q Consensus 241 -----~~~A~~l~~~m~~~----g~~p~-~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~-~~~~----t~~~l~~~~ 305 (593)
+++|.+.+++..+. +-.+. ...+..+...|...|++++|...+++..+.... .+.. .+..+...+
T Consensus 194 ~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 273 (411)
T 4a1s_A 194 DVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSH 273 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 99999998886531 22122 246788889999999999999999988663221 1111 233333333
Q ss_pred hcchhhhhccccchhhhHHHhhhcCCCcccccccccCCceEEEEecccCCCCcCcccccccccCCCHHHHHHHHHHHHHH
Q 007684 306 DSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNL 385 (593)
Q Consensus 306 ~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~l~~~~~~~~~~~i~~l 385 (593)
...+..+.+.. .+.+++.... ...........+..+...|
T Consensus 274 ~~~g~~~~A~~-----~~~~al~~~~-----------------------------------~~~~~~~~~~~~~~la~~~ 313 (411)
T 4a1s_A 274 IFLGQFEDAAE-----HYKRTLALAV-----------------------------------ELGEREVEAQSCYSLGNTY 313 (411)
T ss_dssp HTTTCHHHHHH-----HHHHHHHHHH-----------------------------------HTTCHHHHHHHHHHHHHHH
T ss_pred HHCcCHHHHHH-----HHHHHHHHHH-----------------------------------HcCCHHHHHHHHHHHHHHH
Confidence 32222211111 1111111000 0001113356677788889
Q ss_pred hhhhhhHHhHHHHHHHHHh
Q 007684 386 ACQREVRSDFNKFQEWLGR 404 (593)
Q Consensus 386 ~~~~~~~~a~~~f~~~l~~ 404 (593)
...|+.++|.+.|++.++.
T Consensus 314 ~~~g~~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 314 TLLHEFNTAIEYHNRHLAI 332 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999998875
No 81
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.17 E-value=6.6e-05 Score=73.97 Aligned_cols=166 Identities=11% Similarity=0.041 Sum_probs=123.0
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHH
Q 007684 101 ESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITL-SQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQ 179 (593)
Q Consensus 101 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~ 179 (593)
..+...+..+..++...|++++|++++.+....|-.+ +...+-.++.++.+. |+.+.|.++++
T Consensus 97 ~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~----------------~r~d~A~k~l~ 160 (310)
T 3mv2_B 97 QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLN----------------NNVSTASTIFD 160 (310)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHT----------------TCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHC----------------CCHHHHHHHHH
Confidence 3445555688888999999999999999987665322 445555666677776 59999999999
Q ss_pred HHHhCCCCC-----CHHHHHHHHHHHH--hcC--ChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHH
Q 007684 180 QMITDKVDP-----NEATFTSVARLAV--AKE--DPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAH 250 (593)
Q Consensus 180 ~M~~~g~~p-----~~~ty~~li~~~~--~~g--~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~ 250 (593)
+|.+. .| +..+...|+.++. ..| +..+|+.+|+++.+. .|+..+-..++.++.+.|++++|++.++.
T Consensus 161 ~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 161 NYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp HHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99875 46 4677777777743 334 899999999999763 26534445566689999999999999997
Q ss_pred HHhC-----CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 251 MGES-----GV---VP-EEPELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 251 m~~~-----g~---~p-~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
+.+. +- .| |..++..+|..+...|+ +|.+++.++.+
T Consensus 237 l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 237 LLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred HHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 7642 11 24 45556677777777786 88899999987
No 82
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.16 E-value=6.8e-06 Score=74.36 Aligned_cols=77 Identities=8% Similarity=0.078 Sum_probs=37.7
Q ss_pred HHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007684 209 AFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP-EEPELSALLKLSVDAKKVDKVYEILHRL 286 (593)
Q Consensus 209 A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~Ll~~~~~~g~~~~a~~~l~~m 286 (593)
|...+++..+. .|+ ...+..+...+...|+.++|.+.|+++.+..-.+ +...+..|..++...|+.++|...|++.
T Consensus 93 a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 93 ELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 44555554442 233 3444455555555555555555555555433211 1334555555555555555555555544
Q ss_pred H
Q 007684 287 R 287 (593)
Q Consensus 287 ~ 287 (593)
.
T Consensus 171 l 171 (176)
T 2r5s_A 171 L 171 (176)
T ss_dssp H
T ss_pred H
Confidence 3
No 83
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.15 E-value=0.00068 Score=71.91 Aligned_cols=297 Identities=10% Similarity=-0.057 Sum_probs=187.9
Q ss_pred CCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHH
Q 007684 102 SPEGVLRHKLDMCSK----RGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177 (593)
Q Consensus 102 ~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l 177 (593)
.+...+..+-..|.. .+++++|+.+|++..+.| +...+..|=..|..+. .-.++.++|++.
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~------------g~~~~~~~A~~~ 101 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGE------------GVPQDYAQAVIW 101 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS------------SSCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC------------CCCCCHHHHHHH
Confidence 355667777777877 899999999999998875 4556666655666521 012589999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh----cCChhHHHHHHH
Q 007684 178 FQQMITDKVDPNEATFTSVARLAVA----KEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK----LGNTDKAYEVDA 249 (593)
Q Consensus 178 ~~~M~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~ 249 (593)
|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +...+..+...|.. .++.++|.+.|+
T Consensus 102 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 175 (490)
T 2xm6_A 102 YKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYS 175 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99998876 66778888888988 889999999999998865 34567777788877 789999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhhhccccchh-hhHH
Q 007684 250 HMGESGVVPEEPELSALLKLSVD----AKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDV-SKVR 324 (593)
Q Consensus 250 ~m~~~g~~p~~~t~~~Ll~~~~~----~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~d~-~~~~ 324 (593)
+..+.| +...+..|...|.. .++.++|.+.|++..+.+ ++.....+-..|.... .....++. ....
T Consensus 176 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~---g~~~~~~~A~~~~ 246 (490)
T 2xm6_A 176 KAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGI---GVTQDYTQSRVLF 246 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS---SSCCCHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC---CCCCCHHHHHHHH
Confidence 998875 67778888888887 899999999999988754 3444444444443210 01111221 2222
Q ss_pred HhhhcCCCcccccccccCCceEEEEecccCCCCcCcccccccccC--CCHHHHHHHHHHHHHHhhh-----hhhHHhHHH
Q 007684 325 EGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCID--IDPRETENFASSLSNLACQ-----REVRSDFNK 397 (593)
Q Consensus 325 ~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~--l~~~~~~~~~~~i~~l~~~-----~~~~~a~~~ 397 (593)
+...+.|. ...+.+++ .......+.-+...+|++.+. ....+...+..+-..|... ++.++|++.
T Consensus 247 ~~a~~~~~-~~a~~~lg-------~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~ 318 (490)
T 2xm6_A 247 SQSAEQGN-SIAQFRLG-------YILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISW 318 (490)
T ss_dssp HHHHTTTC-HHHHHHHH-------HHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHH
T ss_pred HHHHHCCC-HHHHHHHH-------HHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHH
Confidence 22222221 11110110 001111233344555555554 2223334455555556665 788899999
Q ss_pred HHHHHHhcCCcCeeeeccceecccCCCCChhhHHHHHHHHHhh
Q 007684 398 FQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQM 440 (593)
Q Consensus 398 f~~~l~~~~~~d~vidg~nv~~~~~~~~~~~~l~~vv~~l~~~ 440 (593)
|++..+.+.+ +. -.++|.+...+-.....+.+++.+++.
T Consensus 319 ~~~a~~~~~~-~a---~~~lg~~y~~~g~~~~~~~A~~~~~~a 357 (490)
T 2xm6_A 319 YTKSAEQGDA-TA---QANLGAIYFRLGSEEEHKKAVEWFRKA 357 (490)
T ss_dssp HHHHHHTTCH-HH---HHHHHHHHHHSCCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCH-HH---HHHHHHHHHhCCCcccHHHHHHHHHHH
Confidence 9988876532 21 122332211111234567777777663
No 84
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.14 E-value=3.8e-05 Score=83.44 Aligned_cols=153 Identities=10% Similarity=-0.112 Sum_probs=94.8
Q ss_pred CCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCC
Q 007684 76 KSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGS 155 (593)
Q Consensus 76 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~ 155 (593)
.|++++|...+.+.+ ...+.....+..+...+.+.|++++|.+.|++..+.. +-+...|..+-.+|...
T Consensus 2 ~g~~~~A~~~~~~al-------~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~--- 70 (568)
T 2vsy_A 2 TADGPRELLQLRAAV-------RHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQ--- 70 (568)
T ss_dssp --------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHT---
T ss_pred CccHHHHHHHHHHHH-------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC---
Confidence 366777777776665 3334455667777778888888888888888877652 12345555555566554
Q ss_pred CCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHH
Q 007684 156 ESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFG 234 (593)
Q Consensus 156 ~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~ 234 (593)
|++++|.+.|++..+.. +-+...+..+..++...|++++|.+.+++..+.. |+ ...+..+...
T Consensus 71 -------------g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~ 134 (568)
T 2vsy_A 71 -------------QRHAEAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNW 134 (568)
T ss_dssp -------------TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred -------------CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 57888888888777654 4456777788888888888888888888877632 43 4567777777
Q ss_pred HHhc---CChhHHHHHHHHHHhCC
Q 007684 235 FCKL---GNTDKAYEVDAHMGESG 255 (593)
Q Consensus 235 ~~~~---g~~~~A~~l~~~m~~~g 255 (593)
+... |+.++|.+.+++..+.+
T Consensus 135 ~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 135 RRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHhhccccHHHHHHHHHHHHhcC
Confidence 7777 88888888888776543
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.13 E-value=2.3e-05 Score=77.27 Aligned_cols=166 Identities=8% Similarity=-0.090 Sum_probs=125.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHH
Q 007684 107 LRHKLDMCSKRGDVFEALRLYDDARSN----GITLS-QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM 181 (593)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M 181 (593)
|+.....|...|++++|...|++..+. |-.++ ..+|+.+-.+|... |++++|++.|++.
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~----------------g~~~~A~~~~~~A 103 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSG----------------GNSVNAVDSLENA 103 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----------------TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHC----------------CCHHHHHHHHHHH
Confidence 777788899999999999999987643 32222 35666666677775 6999999999987
Q ss_pred HhC----CCCC-CHHHHHHHHHHHHhc-CChHHHHHHHHHHHhCC----CCCC-cccHHHHHHHHHhcCChhHHHHHHHH
Q 007684 182 ITD----KVDP-NEATFTSVARLAVAK-EDPEMAFDLVKQMKSFG----IPPK-LRSYGPALFGFCKLGNTDKAYEVDAH 250 (593)
Q Consensus 182 ~~~----g~~p-~~~ty~~li~~~~~~-g~~~~A~~l~~~m~~~g----~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~ 250 (593)
.+. |-.. -..+++.+...|... |++++|...+++..+.. -.+. ..+|+.+...|.+.|++++|.+.|++
T Consensus 104 l~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 183 (292)
T 1qqe_A 104 IQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSK 183 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 642 2111 135788999999996 99999999999987521 1011 34688899999999999999999999
Q ss_pred HHhCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 251 MGESGVVPEE------PELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 251 m~~~g~~p~~------~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
..+....... ..|..+..++...|+.++|...+++..+
T Consensus 184 al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 184 LIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9875433222 1577788889999999999999998865
No 86
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.13 E-value=0.00015 Score=83.85 Aligned_cols=144 Identities=10% Similarity=-0.013 Sum_probs=73.2
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHH
Q 007684 103 PEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMI 182 (593)
Q Consensus 103 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~ 182 (593)
++.+|..+-.++.+.|++++|.+.|.+. -|...|.-+...|.+. |++++|.+.|...+
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~l----------------GkyEEAIeyL~mAr 1161 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTS----------------GNWEELVKYLQMAR 1161 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHc----------------CCHHHHHHHHHHHH
Confidence 3455556666666666666666666442 2445555555555554 36666666665544
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH
Q 007684 183 TDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPE 262 (593)
Q Consensus 183 ~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 262 (593)
+.. ++....+.++-+|++.+++++..... + .|+...|..+...|-..|++++|..+|... ..
T Consensus 1162 k~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~n 1223 (1630)
T 1xi4_A 1162 KKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SN 1223 (1630)
T ss_pred hhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hH
Confidence 432 22222333555555555555322221 1 133334444555555555555555555553 24
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 007684 263 LSALLKLSVDAKKVDKVYEILHRL 286 (593)
Q Consensus 263 ~~~Ll~~~~~~g~~~~a~~~l~~m 286 (593)
|..+...|++.|++++|.+.+++.
T Consensus 1224 y~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1224 FGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHh
Confidence 555555555555555555555544
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.12 E-value=0.00012 Score=70.53 Aligned_cols=169 Identities=11% Similarity=0.010 Sum_probs=127.1
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHH
Q 007684 101 ESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLS----QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFE 176 (593)
Q Consensus 101 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~ 176 (593)
..+...+-.+...+.+.|++++|...|+++.+.. |+ ...+..+-.+|... |++++|.+
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~----------------~~~~~A~~ 73 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQN----------------KEYLLAAS 73 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHT----------------TCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHh----------------CcHHHHHH
Confidence 3445567777888899999999999999998763 33 34444444466665 69999999
Q ss_pred HHHHHHhCCC-CC-CHHHHHHHHHHHHh--------cCChHHHHHHHHHHHhCCCCCCc-ccH-----------------
Q 007684 177 IFQQMITDKV-DP-NEATFTSVARLAVA--------KEDPEMAFDLVKQMKSFGIPPKL-RSY----------------- 228 (593)
Q Consensus 177 l~~~M~~~g~-~p-~~~ty~~li~~~~~--------~g~~~~A~~l~~~m~~~g~~p~~-~ty----------------- 228 (593)
.|++...... .| ...++..+..++.. .|++++|...|++..+.. |+. ...
T Consensus 74 ~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~ 151 (261)
T 3qky_A 74 EYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQ 151 (261)
T ss_dssp HHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHH
Confidence 9999987532 22 24567788888888 999999999999998742 543 333
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHc
Q 007684 229 GPALFGFCKLGNTDKAYEVDAHMGESGVV-P-EEPELSALLKLSVDA----------KKVDKVYEILHRLRTL 289 (593)
Q Consensus 229 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p-~~~t~~~Ll~~~~~~----------g~~~~a~~~l~~m~~~ 289 (593)
-.+...|.+.|++++|...|++..+..-. + ....+..+..+|... |++++|...++++.+.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 34578889999999999999998864311 1 234577788888766 8899999999999773
No 88
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.12 E-value=3.1e-06 Score=83.94 Aligned_cols=205 Identities=10% Similarity=-0.049 Sum_probs=145.7
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-CCC----HHH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGI-TLS----QHH 141 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t 141 (593)
..+...|...|++++|...+.+.+..... ..........+..+...+...|++++|...+++..+..- .++ ..+
T Consensus 47 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 125 (338)
T 3ro2_A 47 SQLGNAYFYLHDYAKALEYHHHDLTLART-IGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 125 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhc-ccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 67788899999999999999776622211 110111133488889999999999999999998764310 112 235
Q ss_pred HHHHHHHHHccCCCCCCCCCCCccccccc--------------------HHHHHHHHHHHHhC----CCCC-CHHHHHHH
Q 007684 142 YNVLLYVCSCKCGSESSENGDRENDSNLG--------------------LKRGFEIFQQMITD----KVDP-NEATFTSV 196 (593)
Q Consensus 142 y~~ll~~~~~~~~~~~~~~~~~~~~~~g~--------------------~~~a~~l~~~M~~~----g~~p-~~~ty~~l 196 (593)
+..+-..+... |+ +++|.+.+++.... +-.+ ...++..+
T Consensus 126 ~~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 189 (338)
T 3ro2_A 126 LYNLGNVYHAK----------------GKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNL 189 (338)
T ss_dssp HHHHHHHHHHH----------------HHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHc----------------CcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 55555566554 46 88999888876532 2111 23478888
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC----CCCC-CcccHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCC-HHHHHHH
Q 007684 197 ARLAVAKEDPEMAFDLVKQMKSF----GIPP-KLRSYGPALFGFCKLGNTDKAYEVDAHMGES----GVVPE-EPELSAL 266 (593)
Q Consensus 197 i~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~L 266 (593)
...+...|++++|.+.+++..+. +-.+ ...++..+...|...|+.++|.+.+++.... +-.+. ...+..+
T Consensus 190 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 269 (338)
T 3ro2_A 190 GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL 269 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Confidence 99999999999999999998642 1111 1247888999999999999999999987642 11111 4567888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 007684 267 LKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 267 l~~~~~~g~~~~a~~~l~~m~~ 288 (593)
...+...|++++|...+++..+
T Consensus 270 a~~~~~~g~~~~A~~~~~~a~~ 291 (338)
T 3ro2_A 270 GNTYTLLQDYEKAIDYHLKHLA 291 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHH
Confidence 8999999999999999998865
No 89
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.10 E-value=2.6e-06 Score=87.39 Aligned_cols=205 Identities=9% Similarity=-0.011 Sum_probs=147.2
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCC--------------------HHHHHHH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGD--------------------VFEALRL 126 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--------------------~~~A~~l 126 (593)
..+...|...|++++|...+.+.+..... ..........+..+...|...|+ +++|+.+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRE-LNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHh-cccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 77778899999999999999776622211 11000112358888889999999 9999999
Q ss_pred HHHHHHC----CCCCC-HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCC-CCC----HHHHHHH
Q 007684 127 YDDARSN----GITLS-QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV-DPN----EATFTSV 196 (593)
Q Consensus 127 ~~~m~~~----g~~p~-~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~-~p~----~~ty~~l 196 (593)
+++..+. +-.|. ..++..+-..|... |++++|.+.|++..+... .++ ..++..+
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~----------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 233 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLL----------------GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNL 233 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----------------TBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHc----------------cCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 9886543 21222 23444444566654 699999999998764210 122 2378899
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC----CCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCC-HHHHHHH
Q 007684 197 ARLAVAKEDPEMAFDLVKQMKSF----GIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGES----GVVPE-EPELSAL 266 (593)
Q Consensus 197 i~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~L 266 (593)
...+...|++++|...+++..+. +-.+. ..++..+...|...|++++|.+.+++..+. +-.+. ...+..+
T Consensus 234 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 313 (406)
T 3sf4_A 234 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSL 313 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 99999999999999999998642 11111 457888999999999999999999987642 21111 4467888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 007684 267 LKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 267 l~~~~~~g~~~~a~~~l~~m~~ 288 (593)
..+|...|++++|.+.+++..+
T Consensus 314 a~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 314 GNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 8999999999999999998765
No 90
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.08 E-value=1.2e-05 Score=79.12 Aligned_cols=165 Identities=8% Similarity=-0.003 Sum_probs=127.0
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHH
Q 007684 102 SPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITL-SQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQ 180 (593)
Q Consensus 102 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~ 180 (593)
.+...+..+-..+.+.|++++|..+|+++.+. .| +...+..+-.++... |++++|.+.|++
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~----------------g~~~~A~~~l~~ 176 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIAL----------------NRSEDAEAVLXT 176 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHT----------------TCHHHHHHHHTT
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHC----------------CCHHHHHHHHHh
Confidence 34455777888899999999999999998876 44 455566666677775 699999999998
Q ss_pred HHhCCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-
Q 007684 181 MITDKVDPNEATFTS-VARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVV- 257 (593)
Q Consensus 181 M~~~g~~p~~~ty~~-li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~- 257 (593)
..... |+...... ....+...++.++|...+++..... |+ ...+..+...|...|+.++|.+.|.++.+..-.
T Consensus 177 ~~~~~--p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~--P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 177 IPLQD--QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN--PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA 252 (287)
T ss_dssp SCGGG--CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred Cchhh--cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC--CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence 87654 45443333 3334667888889999999887743 55 677888999999999999999999999865422
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 258 PEEPELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 258 p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
.+...+..|...+...|+.++|...+++...
T Consensus 253 ~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 253 ADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp GGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 1256789999999999999999988887654
No 91
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.08 E-value=0.00021 Score=70.23 Aligned_cols=166 Identities=5% Similarity=-0.054 Sum_probs=123.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCCCHH---HHHH-HHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHH
Q 007684 107 LRHKLDMCSKRGDVFEALRLYDDARSNG-ITLSQH---HYNV-LLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM 181 (593)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~---ty~~-ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M 181 (593)
+...+..+...|++++|..++++..+.. ..|+.. .|.. +...+... |+.++|++.|++.
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~Ai~~~~~a 141 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKK----------------VDYEYCILELKKL 141 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTS----------------SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcc----------------cCHHHHHHHHHHH
Confidence 4455788999999999999999988752 222221 1222 33344333 6899999999999
Q ss_pred HhCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHh----C-CCCCC-cccHHHHHHHHHhcCChhHHHHHHHH
Q 007684 182 ITDKVD-PN----EATFTSVARLAVAKEDPEMAFDLVKQMKS----F-GIPPK-LRSYGPALFGFCKLGNTDKAYEVDAH 250 (593)
Q Consensus 182 ~~~g~~-p~----~~ty~~li~~~~~~g~~~~A~~l~~~m~~----~-g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~ 250 (593)
...... ++ ..+|+.+...|...|++++|...+++..+ . +..+. ..+|..+...|.+.|+.++|.+.+++
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~ 221 (293)
T 3u3w_A 142 LNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNK 221 (293)
T ss_dssp HHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 874322 23 33799999999999999999999999873 2 22222 24788899999999999999999998
Q ss_pred HHh----CCCCCC-HHHHHHHHHHHHhcCC-HHHHHHHHHHHHH
Q 007684 251 MGE----SGVVPE-EPELSALLKLSVDAKK-VDKVYEILHRLRT 288 (593)
Q Consensus 251 m~~----~g~~p~-~~t~~~Ll~~~~~~g~-~~~a~~~l~~m~~ 288 (593)
..+ .+..+. ...|..+..+|.+.|+ .++|.+.+++..+
T Consensus 222 al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 222 AIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 763 333333 5668889999999994 6999999988765
No 92
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.07 E-value=7.3e-05 Score=81.17 Aligned_cols=152 Identities=11% Similarity=-0.047 Sum_probs=111.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007684 117 RGDVFEALRLYDDARSNGITL-SQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTS 195 (593)
Q Consensus 117 ~g~~~~A~~l~~~m~~~g~~p-~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ 195 (593)
.|++++|++.|+++.+. .| +...|..+-..+... |++++|.+.|++..+.. +-+..++..
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~----------------g~~~~A~~~~~~al~~~-p~~~~~~~~ 62 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGM----------------GDTTAGEMAVQRGLALH-PGHPEAVAR 62 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHH----------------TCHHHHHHHHHHHHTTS-TTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 47889999999998766 34 456666666666665 59999999999998876 557889999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-
Q 007684 196 VARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA- 273 (593)
Q Consensus 196 li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~- 273 (593)
+..+|...|++++|.+.+++..+.. |+ ...|..+...|.+.|+.++|.+.+++..+..- -+...+..+..++...
T Consensus 63 lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~ 139 (568)
T 2vsy_A 63 LGRVRWTQQRHAEAAVLLQQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLC 139 (568)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhh
Confidence 9999999999999999999998743 54 57888899999999999999999999886532 3466788899999999
Q ss_pred --CCHHHHHHHHHHHHHcc
Q 007684 274 --KKVDKVYEILHRLRTLV 290 (593)
Q Consensus 274 --g~~~~a~~~l~~m~~~~ 290 (593)
|+.++|.+.+++..+..
T Consensus 140 ~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 140 DWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp CCTTHHHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHHhcC
Confidence 99999999999987744
No 93
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.07 E-value=0.0004 Score=74.56 Aligned_cols=168 Identities=11% Similarity=0.096 Sum_probs=126.6
Q ss_pred CCCHHHHHHHHHHHHc-------CCCHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCccc
Q 007684 101 ESPEGVLRHKLDMCSK-------RGDVF-------EALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDREND 166 (593)
Q Consensus 101 ~~~~~~~~~li~~~~~-------~g~~~-------~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~ 166 (593)
+.....|......+.+ .|+++ +|..+|++..+.-.+-+...|..+...+...
T Consensus 269 p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~-------------- 334 (530)
T 2ooe_A 269 GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR-------------- 334 (530)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT--------------
T ss_pred CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc--------------
Confidence 3445566666666664 79987 8999999887632233577777777777775
Q ss_pred ccccHHHHHHHHHHHHhCCCCCC-H-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHH-HHHHHhcCChh
Q 007684 167 SNLGLKRGFEIFQQMITDKVDPN-E-ATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPA-LFGFCKLGNTD 242 (593)
Q Consensus 167 ~~g~~~~a~~l~~~M~~~g~~p~-~-~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~l-i~~~~~~g~~~ 242 (593)
|++++|.++|+++.+. .|+ . ..|...+..+.+.|++++|.++|++..+. .|+ ...|-.. ...+...|+.+
T Consensus 335 --g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~ 408 (530)
T 2ooe_A 335 --MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKS 408 (530)
T ss_dssp --TCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHH
T ss_pred --CCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChh
Confidence 5999999999999985 443 3 58999999999999999999999999874 233 2222221 12234689999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007684 243 KAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289 (593)
Q Consensus 243 ~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~ 289 (593)
+|..+|+...+.. +-+...|..++..+.+.|+.++|..+|++..+.
T Consensus 409 ~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 409 VAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 9999999887643 124677999999999999999999999998774
No 94
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.07 E-value=6.1e-06 Score=84.70 Aligned_cols=202 Identities=6% Similarity=-0.058 Sum_probs=144.7
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhc-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCCC-HH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKAR-RESPEGVLRHKLDMCSKRGDVFEALRLYDDARSN----GITLS-QH 140 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~ 140 (593)
..+-..|...|++++|...+.+.+.. .+.... .......++.+-..|...|++++|+..|++..+. +-.+. ..
T Consensus 147 ~~lg~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 225 (383)
T 3ulq_A 147 FKMSESYYYMKQTYFSMDYARQAYEI-YKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGR 225 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-HHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH-HHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 77778899999999999998766622 221100 0011234888999999999999999999987644 21111 12
Q ss_pred HHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007684 141 HYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD----KV-DPNEATFTSVARLAVAKEDPEMAFDLVKQ 215 (593)
Q Consensus 141 ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~----g~-~p~~~ty~~li~~~~~~g~~~~A~~l~~~ 215 (593)
+++.+-.+|... |++++|.+.|++..+. +- +....++..+...+.+.|++++|...+++
T Consensus 226 ~~~~lg~~y~~~----------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 289 (383)
T 3ulq_A 226 TLYNIGLCKNSQ----------------SQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSK 289 (383)
T ss_dssp HHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHC----------------CCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 455544566665 6999999999988762 32 33456899999999999999999999998
Q ss_pred HHhC----CCCCCcccHHHHHHHHHhcCC---hhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007684 216 MKSF----GIPPKLRSYGPALFGFCKLGN---TDKAYEVDAHMGESGVVPEE-PELSALLKLSVDAKKVDKVYEILHRLR 287 (593)
Q Consensus 216 m~~~----g~~p~~~ty~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~~-~t~~~Ll~~~~~~g~~~~a~~~l~~m~ 287 (593)
..+. +-......++.+-..|...|+ .++|..++++. +..|+. ..+..|...|...|+.++|.+.+++..
T Consensus 290 al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 290 GMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8642 111112336677788888898 77777777765 333443 347778899999999999999999886
Q ss_pred H
Q 007684 288 T 288 (593)
Q Consensus 288 ~ 288 (593)
+
T Consensus 367 ~ 367 (383)
T 3ulq_A 367 Q 367 (383)
T ss_dssp H
T ss_pred H
Confidence 6
No 95
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.06 E-value=0.00017 Score=66.66 Aligned_cols=127 Identities=13% Similarity=-0.009 Sum_probs=83.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCC
Q 007684 107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV 186 (593)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~ 186 (593)
+..+...+...|++++|+..|++. +.|+...|..+-..+... |++++|.+.|++..+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~----------------g~~~~A~~~~~~al~~~- 67 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTIL----------------KNMTEAEKAFTRSINRD- 67 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHhC-
Confidence 455566677777888887777765 355666666666666654 47777777777776654
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--------------CCC-cccHHHHHHHHHhcCChhHHHHHHHHH
Q 007684 187 DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGI--------------PPK-LRSYGPALFGFCKLGNTDKAYEVDAHM 251 (593)
Q Consensus 187 ~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~--------------~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m 251 (593)
+.+..++..+..++...|++++|.+.+++..+..- .|+ ...+..+..+|.+.|+.++|.+.|++.
T Consensus 68 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 68 KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 44666777777777777777777777777765321 011 145566666677777777777777766
Q ss_pred HhC
Q 007684 252 GES 254 (593)
Q Consensus 252 ~~~ 254 (593)
.+.
T Consensus 148 l~~ 150 (213)
T 1hh8_A 148 TSM 150 (213)
T ss_dssp HTT
T ss_pred HHc
Confidence 643
No 96
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.06 E-value=0.00034 Score=65.80 Aligned_cols=166 Identities=10% Similarity=-0.005 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHH
Q 007684 104 EGVLRHKLDMCSKRGDVFEALRLYDDARSNGIT-LS-QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM 181 (593)
Q Consensus 104 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~-~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M 181 (593)
...+-.+...+.+.|++++|+..|+++.+..-. |. ...+..+-.++... |++++|++.|++.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~----------------~~~~~A~~~~~~~ 67 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKN----------------ADLPLAQAAIDRF 67 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHT----------------TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhc----------------CCHHHHHHHHHHH
Confidence 445556667788899999999999999876211 11 23444455566665 5999999999999
Q ss_pred HhCCCC-CCH-HHHHHHHHHHHh------------------cCChHHHHHHHHHHHhCCCCCCcc-cH------------
Q 007684 182 ITDKVD-PNE-ATFTSVARLAVA------------------KEDPEMAFDLVKQMKSFGIPPKLR-SY------------ 228 (593)
Q Consensus 182 ~~~g~~-p~~-~ty~~li~~~~~------------------~g~~~~A~~l~~~m~~~g~~p~~~-ty------------ 228 (593)
.+.... +.. .++-.+..++.. .|+.++|...|+++.+. .|+.. .+
T Consensus 68 l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~ 145 (225)
T 2yhc_A 68 IRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDR 145 (225)
T ss_dssp HHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHH
T ss_pred HHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHH
Confidence 875422 221 234444444443 57899999999999873 36543 22
Q ss_pred -----HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007684 229 -----GPALFGFCKLGNTDKAYEVDAHMGESGVVPEE----PELSALLKLSVDAKKVDKVYEILHRLRTL 289 (593)
Q Consensus 229 -----~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~ 289 (593)
-.+...|.+.|++++|...|+++.+.. |+. ..+..+..+|.+.|+.++|.+.++.+...
T Consensus 146 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 146 LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 234567889999999999999998643 332 45788899999999999999999988774
No 97
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.06 E-value=0.00012 Score=74.44 Aligned_cols=202 Identities=9% Similarity=-0.004 Sum_probs=139.1
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCH---HHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCC--C
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPE---GVLRHKLDMCSKRGDVFEALRLYDDARSN----GIT--L 137 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~--p 137 (593)
+.+...|...|++++|...+.+.+..... ...+. ..++.+...+...|++++|...+++..+. +.. |
T Consensus 57 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 132 (373)
T 1hz4_A 57 SVLGEVLHCKGELTRSLALMQQTEQMARQ----HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLP 132 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTST
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHh----cCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCc
Confidence 55566788899999999998666521111 11111 22677788899999999999999987643 322 3
Q ss_pred CH-HHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHhcCChHHHHHH
Q 007684 138 SQ-HHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVD----PNEATFTSVARLAVAKEDPEMAFDL 212 (593)
Q Consensus 138 ~~-~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~----p~~~ty~~li~~~~~~g~~~~A~~l 212 (593)
.. ..+..+-..+... |++++|.+.+++....... ....++..+...+...|++++|...
T Consensus 133 ~~~~~~~~la~~~~~~----------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 196 (373)
T 1hz4_A 133 MHEFLVRIRAQLLWAW----------------ARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQ 196 (373)
T ss_dssp HHHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh----------------cCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 22 3333344455554 6999999999987653211 1245788899999999999999999
Q ss_pred HHHHHhCCCCCCc-ccHH-----HHHHHHHhcCChhHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHH
Q 007684 213 VKQMKSFGIPPKL-RSYG-----PALFGFCKLGNTDKAYEVDAHMGESGVVP---EEPELSALLKLSVDAKKVDKVYEIL 283 (593)
Q Consensus 213 ~~~m~~~g~~p~~-~ty~-----~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~Ll~~~~~~g~~~~a~~~l 283 (593)
+++.....-.++. ..+. ..+..+...|+.++|...+++.......+ ....+..+..++...|+.++|...+
T Consensus 197 l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l 276 (373)
T 1hz4_A 197 LNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVL 276 (373)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9998753211221 1122 22344779999999999999887533211 1335677888999999999999999
Q ss_pred HHHHH
Q 007684 284 HRLRT 288 (593)
Q Consensus 284 ~~m~~ 288 (593)
++..+
T Consensus 277 ~~a~~ 281 (373)
T 1hz4_A 277 EELNE 281 (373)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88765
No 98
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.01 E-value=0.00062 Score=63.40 Aligned_cols=170 Identities=11% Similarity=-0.035 Sum_probs=132.2
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHH
Q 007684 102 SPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM 181 (593)
Q Consensus 102 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M 181 (593)
.+...+..|-..|...+++++|+.+|++..+.| +...+..|=..|...+ ...+.++|++.|++.
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~~g-------------~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIRNP-------------QQADYPQARQLAEKA 79 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTSST-------------TSCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCC-------------CCCCHHHHHHHHHHH
Confidence 456677888888989999999999999999886 4455555545555421 012799999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCC-CCcccHHHHHHHHHh----cCChhHHHHHHHHHH
Q 007684 182 ITDKVDPNEATFTSVARLAVA----KEDPEMAFDLVKQMKSFGIP-PKLRSYGPALFGFCK----LGNTDKAYEVDAHMG 252 (593)
Q Consensus 182 ~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g~~-p~~~ty~~li~~~~~----~g~~~~A~~l~~~m~ 252 (593)
.+.| +..++..|...|.. .++.++|++.|++..+.|.. -....+..|-..|.. .++.++|.+.|++..
T Consensus 80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 8766 67788888888887 89999999999999886531 015778888888988 889999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHccCC
Q 007684 253 ESGVVPEEPELSALLKLSVDA-K-----KVDKVYEILHRLRTLVRQ 292 (593)
Q Consensus 253 ~~g~~p~~~t~~~Ll~~~~~~-g-----~~~~a~~~l~~m~~~~~~ 292 (593)
+.+ .+...+..|-..|... | +.++|...|++..+.|..
T Consensus 157 ~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 157 SLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 762 2444677777777653 3 899999999999886643
No 99
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.00 E-value=6.2e-05 Score=72.56 Aligned_cols=170 Identities=11% Similarity=-0.047 Sum_probs=120.8
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCC---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-CCC-HHH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESP---EGVLRHKLDMCSKRGDVFEALRLYDDARSNGI-TLS-QHH 141 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~t 141 (593)
-.+...+.+.|++++|...|.+.+ ...+.+ ...+..+...|.+.|++++|+..|++..+..- .|. ...
T Consensus 19 ~~~a~~~~~~g~~~~A~~~~~~~l-------~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 19 FERAMEFYNQGKYDRAIEYFKAVF-------TYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHG-------GGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH-------HhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 555667889999999999997777 333333 56688889999999999999999999987621 122 233
Q ss_pred HHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHH-----------------HHHHHHHHhcC
Q 007684 142 YNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATF-----------------TSVARLAVAKE 204 (593)
Q Consensus 142 y~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty-----------------~~li~~~~~~g 204 (593)
+..+-.++...+ .+.....|++++|.+.|++..... +-+.... ..+...|.+.|
T Consensus 92 ~~~lg~~~~~~~--------~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g 162 (261)
T 3qky_A 92 EYERAMCYYKLS--------PPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERRE 162 (261)
T ss_dssp HHHHHHHHHHHC--------CCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhc--------ccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 333333444310 001111379999999999998764 2222233 45678899999
Q ss_pred ChHHHHHHHHHHHhCCCCCC----cccHHHHHHHHHhc----------CChhHHHHHHHHHHhC
Q 007684 205 DPEMAFDLVKQMKSFGIPPK----LRSYGPALFGFCKL----------GNTDKAYEVDAHMGES 254 (593)
Q Consensus 205 ~~~~A~~l~~~m~~~g~~p~----~~ty~~li~~~~~~----------g~~~~A~~l~~~m~~~ 254 (593)
++++|...|++..+.. |+ ...+..+..+|.+. |++++|.+.|++..+.
T Consensus 163 ~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 163 LYEAAAVTYEAVFDAY--PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp CHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHC--CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 9999999999998742 44 24566777888766 8899999999998864
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.97 E-value=4.5e-05 Score=68.81 Aligned_cols=113 Identities=9% Similarity=0.051 Sum_probs=47.8
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHH--HHhcCChhHHHHH
Q 007684 170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG--FCKLGNTDKAYEV 247 (593)
Q Consensus 170 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~--~~~~g~~~~A~~l 247 (593)
++++|...|++..+.. +-+...+..+...+...|++++|...+++.... .|+.. +..+... +...+...+|.+.
T Consensus 21 ~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~-~~~~~~~~~~~~~~~~~~a~~~ 96 (176)
T 2r5s_A 21 EHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNS-YKSLIAKLELHQQAAESPELKR 96 (176)
T ss_dssp CHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHH-HHHHHHHHHHHHHHTSCHHHHH
T ss_pred CHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChH-HHHHHHHHHHHhhcccchHHHH
Confidence 4455555554443322 223444445555555555555555555444331 12111 1111110 1111222234455
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 248 DAHMGESGVVP-EEPELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 248 ~~~m~~~g~~p-~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
+++..+.. | +...+..+..++...|+.++|...|+++.+
T Consensus 97 ~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 136 (176)
T 2r5s_A 97 LEQELAAN--PDNFELACELAVQYNQVGRDEEALELLWNILK 136 (176)
T ss_dssp HHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 55444321 3 234455555555555555555555555544
No 101
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.94 E-value=0.00013 Score=71.66 Aligned_cols=140 Identities=8% Similarity=-0.021 Sum_probs=107.3
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccc-HHHHHHHHHhcCChhHHHHH
Q 007684 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRS-YGPALFGFCKLGNTDKAYEV 247 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-y~~li~~~~~~g~~~~A~~l 247 (593)
|++++|.+.|++..+.. +-+...+..+...+...|++++|..++++.... .|+... .......+.+.++.++|.+.
T Consensus 131 g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~~~~~~~~a~~~ 207 (287)
T 3qou_A 131 SNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELLXQAADTPEIQQ 207 (287)
T ss_dssp TCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHHhhcccCccHHH
Confidence 69999999999998776 557788999999999999999999999988663 355332 22233346678889999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCC-CHHHHHHHHHHHhcchhhh
Q 007684 248 DAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV-SESTFKIIEDWFDSVDAAE 312 (593)
Q Consensus 248 ~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~-~~~t~~~l~~~~~~~~~~~ 312 (593)
+++..... +.+...+..+..++...|+.++|...|.++.+..... +...+..+...|...+..+
T Consensus 208 l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 208 LQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 99887644 2356678899999999999999999999998743322 2456677777776655433
No 102
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.93 E-value=0.00025 Score=72.03 Aligned_cols=204 Identities=9% Similarity=-0.026 Sum_probs=140.0
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCC-CCH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC--C--CH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRE-SPE--GVLRHKLDMCSKRGDVFEALRLYDDARSNGIT--L--SQ 139 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p--~~ 139 (593)
..+...+...|++++|...+.+.+. ..+. .+.. .+. ..+..+...+...|++++|..++++..+..-. + ..
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~-~~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQ-LINE-QHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH-HHHH-TTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH-HHHH-hccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 5667788999999999999977762 2221 1221 133 23777888899999999999999998754221 1 12
Q ss_pred HHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCC--HHHHH----HHHHHHHhcCChHHHHHHH
Q 007684 140 HHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPN--EATFT----SVARLAVAKEDPEMAFDLV 213 (593)
Q Consensus 140 ~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~--~~ty~----~li~~~~~~g~~~~A~~l~ 213 (593)
.+|..+-..+... |++++|.+.+++.....-.++ ..... ..+..+...|+.++|...+
T Consensus 175 ~~~~~la~~~~~~----------------g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 238 (373)
T 1hz4_A 175 QCLAMLIQCSLAR----------------GDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWL 238 (373)
T ss_dssp HHHHHHHHHHHHH----------------TCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4455555556554 699999999998865321111 22121 2334577999999999999
Q ss_pred HHHHhCCCCCC---cccHHHHHHHHHhcCChhHHHHHHHHHHh----CCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHH
Q 007684 214 KQMKSFGIPPK---LRSYGPALFGFCKLGNTDKAYEVDAHMGE----SGVVPEEP-ELSALLKLSVDAKKVDKVYEILHR 285 (593)
Q Consensus 214 ~~m~~~g~~p~---~~ty~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~~~-t~~~Ll~~~~~~g~~~~a~~~l~~ 285 (593)
++.......+. ...+..+...+...|+.++|.+.+++... .|..++.. .+..+..++...|+.++|...+++
T Consensus 239 ~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 318 (373)
T 1hz4_A 239 RHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLD 318 (373)
T ss_dssp HHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 98865332111 12456778889999999999999998763 23322332 566677788899999999999988
Q ss_pred HHH
Q 007684 286 LRT 288 (593)
Q Consensus 286 m~~ 288 (593)
..+
T Consensus 319 al~ 321 (373)
T 1hz4_A 319 ALK 321 (373)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 103
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.93 E-value=3.4e-05 Score=79.00 Aligned_cols=201 Identities=6% Similarity=-0.124 Sum_probs=141.5
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCCC-HH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRE-SPEGVLRHKLDMCSKRGDVFEALRLYDDARSN----GITLS-QH 140 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~ 140 (593)
..+-..|...|++++|...+.+.+. ..++..... .....++.+-..|...|++++|++.|++..+. |-.+. ..
T Consensus 145 ~~lg~~y~~~~~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 223 (378)
T 3q15_A 145 FKVAEAYYHMKQTHVSMYHILQALD-IYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAI 223 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH-HHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHH-HHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 6777789999999999998866652 111111100 11334888999999999999999999987653 21111 13
Q ss_pred HHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHh-----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007684 141 HYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMIT-----DKVDPNEATFTSVARLAVAKEDPEMAFDLVKQ 215 (593)
Q Consensus 141 ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~-----~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~ 215 (593)
+++.+-.+|... |++++|.+.|++... .. +....++..+...+.+.|++++|...+++
T Consensus 224 ~~~~lg~~y~~~----------------~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 286 (378)
T 3q15_A 224 SLLNIANSYDRS----------------GDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEE 286 (378)
T ss_dssp HHHHHHHHHHHH----------------TCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHC----------------CCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 344444466654 699999999998876 33 33467899999999999999999999999
Q ss_pred HHhCCCC---CC-cccHHHHHHHHHhcCC---hhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007684 216 MKSFGIP---PK-LRSYGPALFGFCKLGN---TDKAYEVDAHMGESGVVPEE-PELSALLKLSVDAKKVDKVYEILHRLR 287 (593)
Q Consensus 216 m~~~g~~---p~-~~ty~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~~-~t~~~Ll~~~~~~g~~~~a~~~l~~m~ 287 (593)
..+..-. |. ...++.+-..|...++ .++|...+++. +..|+. ..+..+...|...|+.++|...+++..
T Consensus 287 al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 287 GLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8763211 21 2345555566667777 77777777763 333333 346778889999999999999999886
Q ss_pred H
Q 007684 288 T 288 (593)
Q Consensus 288 ~ 288 (593)
+
T Consensus 364 ~ 364 (378)
T 3q15_A 364 K 364 (378)
T ss_dssp H
T ss_pred H
Confidence 5
No 104
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.92 E-value=0.0006 Score=66.90 Aligned_cols=166 Identities=6% Similarity=-0.078 Sum_probs=121.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHH
Q 007684 107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQ-----HHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM 181 (593)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M 181 (593)
+...+..+...|++++|.+.+.+..+..-..+. ..+..+-..+... |++++|++.|++.
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~A~~~~~~a 141 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKK----------------VDYEYCILELKKL 141 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTS----------------SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcC----------------CCHHHHHHHHHHH
Confidence 566788899999999999999988776322111 1111222233443 6999999999998
Q ss_pred HhCCC---CCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCC-----cccHHHHHHHHHhcCChhHHHHHHHH
Q 007684 182 ITDKV---DPN--EATFTSVARLAVAKEDPEMAFDLVKQMKSF-GIPPK-----LRSYGPALFGFCKLGNTDKAYEVDAH 250 (593)
Q Consensus 182 ~~~g~---~p~--~~ty~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~-----~~ty~~li~~~~~~g~~~~A~~l~~~ 250 (593)
..... .+. ..+|+.+...|...|++++|...+++..+. ...|+ ..+|..+...|.+.|++++|.+.+++
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~k 221 (293)
T 2qfc_A 142 LNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNK 221 (293)
T ss_dssp HTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 75321 222 458999999999999999999999998631 11122 25888999999999999999999998
Q ss_pred HHhC----CCCCC-HHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 007684 251 MGES----GVVPE-EPELSALLKLSVDAKKVDKV-YEILHRLRT 288 (593)
Q Consensus 251 m~~~----g~~p~-~~t~~~Ll~~~~~~g~~~~a-~~~l~~m~~ 288 (593)
..+. +.... ...|..+..+|.+.|+.++| ...+++...
T Consensus 222 al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 222 AIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 7642 22222 46688899999999999999 777777654
No 105
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.89 E-value=0.00018 Score=79.93 Aligned_cols=151 Identities=9% Similarity=-0.095 Sum_probs=124.8
Q ss_pred HcCCCHHHHHHHHHHHH--------HCCCCCC-HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCC
Q 007684 115 SKRGDVFEALRLYDDAR--------SNGITLS-QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDK 185 (593)
Q Consensus 115 ~~~g~~~~A~~l~~~m~--------~~g~~p~-~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g 185 (593)
...|++++|++.|++.. +. .|+ ...+..+-.++... |++++|.+.|++..+..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~--~p~~~~~~~~~a~~~~~~----------------g~~~~A~~~~~~al~~~ 463 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD--FSESVELPLMEVRALLDL----------------GDVAKATRKLDDLAERV 463 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C--CTTCSHHHHHHHHHHHHH----------------TCHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc--cccchhHHHHHHHHHHhc----------------CCHHHHHHHHHHHhccC
Confidence 77899999999999988 33 343 44555555566665 59999999999998765
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 007684 186 VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELS 264 (593)
Q Consensus 186 ~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 264 (593)
+-+...|..+..++...|++++|.+.|++..+.. |+ ...|..+..+|.+.|++++ .+.|++..+.+- -+...|.
T Consensus 464 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~ 538 (681)
T 2pzi_A 464 -GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAF 538 (681)
T ss_dssp -CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHH
T ss_pred -cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHH
Confidence 5577899999999999999999999999998743 54 6788889999999999999 999999886442 2456789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 265 ALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 265 ~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
.+..++.+.|+.++|.+.|++..+
T Consensus 539 ~lg~~~~~~g~~~~A~~~~~~al~ 562 (681)
T 2pzi_A 539 GLARARSAEGDRVGAVRTLDEVPP 562 (681)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCT
T ss_pred HHHHHHHHcCCHHHHHHHHHhhcc
Confidence 999999999999999999988765
No 106
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.87 E-value=7.8e-05 Score=65.46 Aligned_cols=133 Identities=15% Similarity=0.077 Sum_probs=102.1
Q ss_pred cccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHH
Q 007684 166 DSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKA 244 (593)
Q Consensus 166 ~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A 244 (593)
...|++++|++.++...... +-+...+-.+...|.+.|++++|.+.|++..+. .|+ ..+|..+...|.+.|++++|
T Consensus 8 ~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchHHH
Confidence 34589999999999876542 223345677899999999999999999999874 365 67899999999999999999
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHccCCC-CHHHHHHHHHHH
Q 007684 245 YEVDAHMGESGVVP-EEPELSALLKLSVDAKKVDKVYEI-LHRLRTLVRQV-SESTFKIIEDWF 305 (593)
Q Consensus 245 ~~l~~~m~~~g~~p-~~~t~~~Ll~~~~~~g~~~~a~~~-l~~m~~~~~~~-~~~t~~~l~~~~ 305 (593)
...|++..+.. | +...|..+...|.+.|+.+++.+. +++..+ +.| ++..+......+
T Consensus 85 ~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~~~~~l~~~ll 144 (150)
T 4ga2_A 85 VECYRRSVELN--PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSPAVYKLKEQLL 144 (150)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCHHHHHHHHHHH
Confidence 99999988643 5 456788999999999998776654 577765 334 344555444443
No 107
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.87 E-value=0.00037 Score=64.38 Aligned_cols=117 Identities=10% Similarity=-0.043 Sum_probs=99.2
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 007684 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVD 248 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 248 (593)
|++++|.+.|++.. .|+..++..+...+...|++++|.+.+++..+.. +.+...|..+..+|.+.|+.++|.+.|
T Consensus 20 ~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~ 94 (213)
T 1hh8_A 20 KDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIKDL 94 (213)
T ss_dssp TCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHHHHHHHH
Confidence 69999999998773 6788999999999999999999999999998753 134578888999999999999999999
Q ss_pred HHHHhCC--------------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcc
Q 007684 249 AHMGESG--------------VVPE-EPELSALLKLSVDAKKVDKVYEILHRLRTLV 290 (593)
Q Consensus 249 ~~m~~~g--------------~~p~-~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~ 290 (593)
++..+.. ..|+ ...+..+..+|...|+.++|.+.+++..+..
T Consensus 95 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 95 KEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9998643 1122 2568889999999999999999999998743
No 108
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.87 E-value=8.9e-05 Score=67.85 Aligned_cols=157 Identities=11% Similarity=-0.030 Sum_probs=110.3
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHh----CCCCC-C
Q 007684 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMIT----DKVDP-N 189 (593)
Q Consensus 115 ~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~----~g~~p-~ 189 (593)
...|++++|.++++.+... .......++.+-..+... |++++|.+.|++... .+..+ .
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~----------------g~~~~A~~~~~~al~~~~~~~~~~~~ 65 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFM----------------DRFDEARASFQALQQQAQKSGDHTAE 65 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHh----------------CcHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 4678999999966555432 112345555555566665 699999999998765 22222 3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC--CcccHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCC
Q 007684 190 EATFTSVARLAVAKEDPEMAFDLVKQMKSF----GIPP--KLRSYGPALFGFCKLGNTDKAYEVDAHMGES----GVVPE 259 (593)
Q Consensus 190 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p--~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~ 259 (593)
..++..+...+...|++++|.+.+++..+. +-.| ....+..+...+...|++++|.+.+++.... +....
T Consensus 66 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 145 (203)
T 3gw4_A 66 HRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVA 145 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHH
Confidence 457888899999999999999999987642 2112 1346788889999999999999999987632 21111
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 260 -EPELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 260 -~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
...+..+..++...|++++|.+.+++..+
T Consensus 146 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 146 IACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 23367788889999999999999988866
No 109
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.83 E-value=0.00052 Score=56.62 Aligned_cols=81 Identities=12% Similarity=0.130 Sum_probs=37.3
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHH
Q 007684 170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDA 249 (593)
Q Consensus 170 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~ 249 (593)
++++|.++|+++.... +.+..++..+...+...|++++|..+++++.+..- .+..++..+...|...|++++|.+.++
T Consensus 24 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~ 101 (125)
T 1na0_A 24 DYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQ 101 (125)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 4555555555544432 23344444455555555555555555555443211 123344444444445555555555554
Q ss_pred HHH
Q 007684 250 HMG 252 (593)
Q Consensus 250 ~m~ 252 (593)
++.
T Consensus 102 ~~~ 104 (125)
T 1na0_A 102 KAL 104 (125)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 110
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.81 E-value=7.2e-05 Score=69.61 Aligned_cols=166 Identities=10% Similarity=-0.029 Sum_probs=115.8
Q ss_pred HHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHH----------------HHHHHHcCCCHHHHHHHHHHHHHCC
Q 007684 71 LAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRH----------------KLDMCSKRGDVFEALRLYDDARSNG 134 (593)
Q Consensus 71 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------li~~~~~~g~~~~A~~l~~~m~~~g 134 (593)
..+...|++++|...|.+.+ ...+.....+.. +-..|.+.|++++|+..|++..+.
T Consensus 12 ~~~~~~g~~~~A~~~~~~al-------~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~- 83 (208)
T 3urz_A 12 SAAIEAGQNGQAVSYFRQTI-------ALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK- 83 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHH-------HHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHCCCHHHHHHHHHHHH-------HhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
Confidence 35678899999999996666 212222333555 888999999999999999999887
Q ss_pred CCC-CHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh--HHHHH
Q 007684 135 ITL-SQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDP--EMAFD 211 (593)
Q Consensus 135 ~~p-~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~--~~A~~ 211 (593)
.| +...+..+-.++... |++++|.+.|++..+.. +-+..++..+...|...|+. +.+..
T Consensus 84 -~p~~~~~~~~lg~~~~~~----------------g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~ 145 (208)
T 3urz_A 84 -APNNVDCLEACAEMQVCR----------------GQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLET 145 (208)
T ss_dssp -CTTCHHHHHHHHHHHHHH----------------TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34 456666666677765 69999999999998876 55778899998888766543 44555
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 007684 212 LVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSAL 266 (593)
Q Consensus 212 l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~L 266 (593)
.++.... ..|....+.....++...|+.++|.+.|++..+ +.|+......|
T Consensus 146 ~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l 196 (208)
T 3urz_A 146 DYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTL 196 (208)
T ss_dssp HHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHH
T ss_pred HHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHH
Confidence 5554432 222222333455667778999999999999884 45776544444
No 111
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.81 E-value=4.9e-05 Score=84.52 Aligned_cols=178 Identities=8% Similarity=-0.088 Sum_probs=132.5
Q ss_pred hcCCCcccCCCCcccccchHHhh-hhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHc
Q 007684 74 SKKSTVNESSAPNTGTMSNKSKK-KARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITL-SQHHYNVLLYVCSC 151 (593)
Q Consensus 74 ~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~ll~~~~~ 151 (593)
...|++++|.+.+++.+...... ..........+..+...+.+.|++++|+..|+++.+. .| +...|..+-.++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 67888888888885544111110 1122334556888889999999999999999999876 33 45566655556666
Q ss_pred cCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHH
Q 007684 152 KCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGP 230 (593)
Q Consensus 152 ~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~ 230 (593)
. |++++|.+.|++..+.. +-+...+..+..++.+.|++++ .+.|++..+.. |+ ...|..
T Consensus 480 ~----------------g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~ 539 (681)
T 2pzi_A 480 T----------------GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFG 539 (681)
T ss_dssp H----------------TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHH
T ss_pred c----------------CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHH
Confidence 5 69999999999998766 4567889999999999999999 99999998743 54 568888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCC
Q 007684 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEE-PELSALLKLSVDAKK 275 (593)
Q Consensus 231 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~Ll~~~~~~g~ 275 (593)
+..+|.+.|+.++|.+.|++..+ +.|+. ..+..+..++...|.
T Consensus 540 lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 540 LARARSAEGDRVGAVRTLDEVPP--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCT--TSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHHcCCHHHHHHHHHhhcc--cCcccHHHHHHHHHHHHccCC
Confidence 99999999999999999998864 34664 446777777766554
No 112
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.81 E-value=0.00059 Score=59.86 Aligned_cols=94 Identities=12% Similarity=-0.018 Sum_probs=41.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCC
Q 007684 107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV 186 (593)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~ 186 (593)
+..+...+...|++++|...|++..+.. +.+...+..+-..+... |++++|.+.|++.....
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~----------------~~~~~A~~~~~~a~~~~- 77 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRT----------------ECYGYALGDATRAIELD- 77 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHhC-
Confidence 4444455555555555555555544431 11233333333333332 34555555555444432
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007684 187 DPNEATFTSVARLAVAKEDPEMAFDLVKQMKS 218 (593)
Q Consensus 187 ~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 218 (593)
+.+..++..+..++...|++++|.+.+++..+
T Consensus 78 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 78 KKYIKGYYRRAASNMALGKFRAALRDYETVVK 109 (166)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 22334444444444444444444444444443
No 113
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.79 E-value=5.6e-05 Score=66.38 Aligned_cols=140 Identities=10% Similarity=-0.003 Sum_probs=102.1
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCH
Q 007684 112 DMCSKRGDVFEALRLYDDARSNGITLSQH-HYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNE 190 (593)
Q Consensus 112 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~ 190 (593)
.++...|++++|++.+...... .|+.. .+-.+-.+|... |++++|.+.|++..+.. +-+.
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~----------------~~~~~A~~~~~~al~~~-p~~~ 65 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEA----------------KEYDLAKKYICTYINVQ-ERDP 65 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHhC-CCCH
Confidence 3445568899999999876654 33332 222333466665 69999999999998876 5578
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHH-HHHHHhCCCCCC-HHHHHHHH
Q 007684 191 ATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEV-DAHMGESGVVPE-EPELSALL 267 (593)
Q Consensus 191 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l-~~~m~~~g~~p~-~~t~~~Ll 267 (593)
.+|..+..+|...|++++|...|++..+. .|+ ...|..+...|.+.|+.++|.+. +++..+. .|+ ...|....
T Consensus 66 ~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~ 141 (150)
T 4ga2_A 66 KAHRFLGLLYELEENTDKAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKE 141 (150)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHH
Confidence 89999999999999999999999999874 465 57888899999999999876654 5766643 354 44466555
Q ss_pred HHHHhcC
Q 007684 268 KLSVDAK 274 (593)
Q Consensus 268 ~~~~~~g 274 (593)
..+...|
T Consensus 142 ~ll~~~G 148 (150)
T 4ga2_A 142 QLLDCEG 148 (150)
T ss_dssp HHHHTCC
T ss_pred HHHHHhC
Confidence 5555555
No 114
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.79 E-value=0.00068 Score=55.85 Aligned_cols=113 Identities=12% Similarity=0.069 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHh
Q 007684 104 EGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMIT 183 (593)
Q Consensus 104 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~ 183 (593)
...+..+...+...|++++|.++|+++.+.. +.+..++..+...+... |++++|..+|+++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~----------------~~~~~A~~~~~~~~~ 71 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQ----------------GDYDEAIEYYQKALE 71 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHh----------------CCHHHHHHHHHHHHH
Confidence 4458888899999999999999999998763 23566777777777765 599999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHH
Q 007684 184 DKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFC 236 (593)
Q Consensus 184 ~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~ 236 (593)
.. +.+..++..+...+...|++++|...++++.+.. |+ ...+..+...+.
T Consensus 72 ~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 72 LD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred hC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHH
Confidence 65 5578899999999999999999999999998743 44 334444444433
No 115
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.78 E-value=0.00014 Score=73.36 Aligned_cols=163 Identities=7% Similarity=-0.041 Sum_probs=88.6
Q ss_pred CCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCC
Q 007684 77 STVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSE 156 (593)
Q Consensus 77 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~ 156 (593)
+.+++|...+.... .........+..+-..|.+.|++++|+..|++..+.. |+... .
T Consensus 127 ~~~~~A~~~~~~a~-------~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~----------~---- 183 (336)
T 1p5q_A 127 KSFEKAKESWEMNS-------EEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESS----------F---- 183 (336)
T ss_dssp EEEECCCCGGGCCH-------HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCC----------C----
T ss_pred eecccccchhcCCH-------HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hcccc----------C----
Confidence 34556666664443 1111123458889999999999999999999988763 22100 0
Q ss_pred CCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CcccHHHHHHHH
Q 007684 157 SSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPP-KLRSYGPALFGF 235 (593)
Q Consensus 157 ~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~li~~~ 235 (593)
..+.+.++- . ....+|..+..+|.+.|++++|...+++..+.. | +...|..+..+|
T Consensus 184 -------------~~~~~~~~~-~-------~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~ 240 (336)
T 1p5q_A 184 -------------SNEEAQKAQ-A-------LRLASHLNLAMCHLKLQAFSAAIESCNKALELD--SNNEKGLSRRGEAH 240 (336)
T ss_dssp -------------CSHHHHHHH-H-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred -------------ChHHHHHHH-H-------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHH
Confidence 001111110 0 012455556666666666666666666665532 3 244555566666
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHH
Q 007684 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKV-YEILHRL 286 (593)
Q Consensus 236 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a-~~~l~~m 286 (593)
...|++++|.+.|++..+..- -+...+..+..++...|+.+++ ..++.+|
T Consensus 241 ~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 241 LAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666554321 1334455556666666666555 3344444
No 116
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.77 E-value=0.00061 Score=59.73 Aligned_cols=117 Identities=10% Similarity=0.017 Sum_probs=93.1
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 007684 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVD 248 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 248 (593)
|++++|.+.|++..... +.+..++..+...+...|++++|.+.+++..+..- .+...|..+...|...|+.++|.+.+
T Consensus 27 ~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~ 104 (166)
T 1a17_A 27 KDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFRAALRDY 104 (166)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 69999999999988765 45788899999999999999999999999987431 34567888899999999999999999
Q ss_pred HHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 249 AHMGESGVVPEEPEL--SALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 249 ~~m~~~g~~p~~~t~--~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
++..+..- .+...+ -.+...+...|++++|.+.+.+...
T Consensus 105 ~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 105 ETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99886432 233344 3344447778999999988887654
No 117
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.77 E-value=0.00024 Score=63.72 Aligned_cols=123 Identities=10% Similarity=0.047 Sum_probs=97.6
Q ss_pred cccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHH-HHhcCCh-
Q 007684 164 ENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG-FCKLGNT- 241 (593)
Q Consensus 164 ~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~-~~~~g~~- 241 (593)
.+...|++++|.+.|++..+.. +.+...+..+...|...|++++|...+++..+..- .+...+..+... |...|+.
T Consensus 19 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CCC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcc
Confidence 3556789999999999988765 56778999999999999999999999999987431 235567777777 7789998
Q ss_pred -hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007684 242 -DKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289 (593)
Q Consensus 242 -~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~ 289 (593)
++|...+++..+..- -+...+..+..+|...|++++|...+++..+.
T Consensus 97 ~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 97 TAQTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp CHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 999999999886542 24567888999999999999999999998773
No 118
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.74 E-value=0.00019 Score=65.90 Aligned_cols=60 Identities=12% Similarity=-0.025 Sum_probs=34.0
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSN 133 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 133 (593)
+..+......|.++++.+.+....... ......+..+-..+.+.|++++|+..|++..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 67 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEEK-------VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF 67 (198)
T ss_dssp --------------CCCSGGGCCHHHH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cchhhhhhhhhhccccCchhhCCHHHH-------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455666777888999999985444111 112334778888899999999999999998875
No 119
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.73 E-value=0.0016 Score=68.35 Aligned_cols=161 Identities=12% Similarity=0.005 Sum_probs=111.3
Q ss_pred HHHHHHHHHHcCC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHH
Q 007684 106 VLRHKLDMCSKRG---DVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMI 182 (593)
Q Consensus 106 ~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~ 182 (593)
.+..|-..|.+.| +.++|++.|++..+.|.. +...+..|-..|.... ...++.++|++.|++..
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~------------~~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDAT------------LGTPDEKTAQALLEKIA 244 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGG------------GSSCCHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCC------------CCCCCHHHHHHHHHHHc
Confidence 6677777788888 888899999888888743 4444344444554431 11247888999998877
Q ss_pred hCCCCCCHHHHHHHHHH-H--HhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC-----ChhHHHHHHHHHHhC
Q 007684 183 TDKVDPNEATFTSVARL-A--VAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLG-----NTDKAYEVDAHMGES 254 (593)
Q Consensus 183 ~~g~~p~~~ty~~li~~-~--~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g-----~~~~A~~l~~~m~~~ 254 (593)
.| +...+..|... + ...++.++|.+.|++..+.| +...+..+-..|. .| +.++|.+.|++..
T Consensus 245 -~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-- 314 (452)
T 3e4b_A 245 -PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-- 314 (452)
T ss_dssp -GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT--
T ss_pred -CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh--
Confidence 33 44566666665 3 45788999999999888766 4455666666666 55 8888998888876
Q ss_pred CCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHccC
Q 007684 255 GVVPEEPELSALLKLSVD----AKKVDKVYEILHRLRTLVR 291 (593)
Q Consensus 255 g~~p~~~t~~~Ll~~~~~----~g~~~~a~~~l~~m~~~~~ 291 (593)
.-+...+..|-..|.. ..+.++|...|++..+.|.
T Consensus 315 --~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 315 --GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp --TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred --CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 2355666777766665 3388889888888877553
No 120
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.72 E-value=0.00025 Score=70.25 Aligned_cols=163 Identities=9% Similarity=0.002 Sum_probs=120.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHH
Q 007684 107 LRHKLDMCSKRGDVFEALRLYDDARSN----GITLS-QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM 181 (593)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M 181 (593)
|+.....|...|++++|...|.+..+. |-... ..+|+.+-..|... |++++|++.|++.
T Consensus 39 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~----------------g~~~~A~~~~~~A 102 (307)
T 2ifu_A 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDL----------------QRMPEAVQYIEKA 102 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----------------TCGGGGHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC----------------CCHHHHHHHHHHH
Confidence 888888899999999999999987644 21111 24566666677765 5888888888876
Q ss_pred Hh----CCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC-cccHHHHHHHHHhcCChhHHHHHHHH
Q 007684 182 IT----DKVDPN--EATFTSVARLAVAKEDPEMAFDLVKQMKSF----GIPPK-LRSYGPALFGFCKLGNTDKAYEVDAH 250 (593)
Q Consensus 182 ~~----~g~~p~--~~ty~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~ 250 (593)
.+ .| .+. ..+++.+...|.. |++++|...+++..+. +-.+. ..+++.+...|.+.|++++|.+.|++
T Consensus 103 l~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 180 (307)
T 2ifu_A 103 SVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQK 180 (307)
T ss_dssp HHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 53 22 222 3578888889988 9999999999988642 11111 35788899999999999999999999
Q ss_pred HHhC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007684 251 MGES----GVVPEE-PELSALLKLSVDAKKVDKVYEILHRLR 287 (593)
Q Consensus 251 m~~~----g~~p~~-~t~~~Ll~~~~~~g~~~~a~~~l~~m~ 287 (593)
.... +..+.. ..+..+..++...|+.++|...|++..
T Consensus 181 al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 181 EKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 8752 222222 256677778888899999999999886
No 121
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.72 E-value=0.00029 Score=63.19 Aligned_cols=98 Identities=11% Similarity=0.003 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCCCCCCCCCCCcccccccH--HHHHHHHH
Q 007684 103 PEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYV-CSCKCGSESSENGDRENDSNLGL--KRGFEIFQ 179 (593)
Q Consensus 103 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~-~~~~~~~~~~~~~~~~~~~~g~~--~~a~~l~~ 179 (593)
....+..+...|...|++++|...|+++.+..- .+...+..+-.+ +... |+. ++|.+.|+
T Consensus 43 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~----------------~~~~~~~A~~~~~ 105 (177)
T 2e2e_A 43 NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQA----------------SQHMTAQTRAMID 105 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHT----------------TTCCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhc----------------CCcchHHHHHHHH
Confidence 334455555555555555555555555444311 122333333223 3222 244 55555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007684 180 QMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS 218 (593)
Q Consensus 180 ~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 218 (593)
+..+.. +-+...+..+...+...|++++|...+++..+
T Consensus 106 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 106 KALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 554433 22344445555555555555555555555544
No 122
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.66 E-value=0.00031 Score=66.03 Aligned_cols=179 Identities=11% Similarity=-0.033 Sum_probs=117.5
Q ss_pred HHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-CCH-HHHH
Q 007684 68 LCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESP--EGVLRHKLDMCSKRGDVFEALRLYDDARSNGIT-LSQ-HHYN 143 (593)
Q Consensus 68 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~-~ty~ 143 (593)
.+...+.+.|++++|...|.+++ +.....+ ...+..+..+|.+.|++++|+..|+++.+..-. +.. ..+-
T Consensus 9 ~~a~~~~~~g~~~~A~~~~~~~~------~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 9 ATAQQKLQDGNWRQAITQLEALD------NRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH------HHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH------HhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34556888999999999997666 1111222 346778889999999999999999999876311 111 1222
Q ss_pred HHHHHHHccCC--CCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHH-----------------HHHHHHHHhcC
Q 007684 144 VLLYVCSCKCG--SESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATF-----------------TSVARLAVAKE 204 (593)
Q Consensus 144 ~ll~~~~~~~~--~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty-----------------~~li~~~~~~g 204 (593)
.+-.++...+. .+....+-......|+.++|...|+++.+.. +-+..+. -.+...+.+.|
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~ 161 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERG 161 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 22222222100 0000011112233579999999999998764 2222222 24556788999
Q ss_pred ChHHHHHHHHHHHhCCCCCCc----ccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 007684 205 DPEMAFDLVKQMKSFGIPPKL----RSYGPALFGFCKLGNTDKAYEVDAHMGESG 255 (593)
Q Consensus 205 ~~~~A~~l~~~m~~~g~~p~~----~ty~~li~~~~~~g~~~~A~~l~~~m~~~g 255 (593)
++++|...|+++.+.. |+. ..+..+..+|.+.|+.++|.+.++.+...+
T Consensus 162 ~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 162 AWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp CHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 9999999999998732 543 467779999999999999999999988654
No 123
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.64 E-value=0.00078 Score=59.19 Aligned_cols=82 Identities=15% Similarity=-0.064 Sum_probs=45.2
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHH
Q 007684 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEV 247 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l 247 (593)
|++++|.+.|++..... +-+...|..+..+|...|++++|...|++..+. .|+ ...|..+..+|.+.|+.++|.+.
T Consensus 50 g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~~~~~~~~lg~~~~~lg~~~eA~~~ 126 (151)
T 3gyz_A 50 GRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKNDYTPVFHTGQCQLRLKAPLKAKEC 126 (151)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSSCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence 35555555555555443 334555555555566666666666666655542 233 34555555666666666666666
Q ss_pred HHHHHh
Q 007684 248 DAHMGE 253 (593)
Q Consensus 248 ~~~m~~ 253 (593)
|++..+
T Consensus 127 ~~~al~ 132 (151)
T 3gyz_A 127 FELVIQ 132 (151)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665554
No 124
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.62 E-value=0.00067 Score=61.85 Aligned_cols=120 Identities=8% Similarity=-0.057 Sum_probs=91.0
Q ss_pred cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCCC-cccHHHHHHHHHhcCChh
Q 007684 168 NLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS----FGIPPK-LRSYGPALFGFCKLGNTD 242 (593)
Q Consensus 168 ~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~ty~~li~~~~~~g~~~ 242 (593)
.|++++|.++++.+... ......++..+...+...|++++|...+++... .+..|. ..++..+...|...|+++
T Consensus 5 ~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 5 AHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp --CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 57999999966655442 123567889999999999999999999998865 223232 467888889999999999
Q ss_pred HHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 243 KAYEVDAHMGES----GVVP--EEPELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 243 ~A~~l~~~m~~~----g~~p--~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
+|.+.+++..+. +-.| ....+..+...+...|++++|...+++..+
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV 135 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999987642 2122 134478888899999999999999988765
No 125
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.62 E-value=0.0015 Score=54.16 Aligned_cols=114 Identities=11% Similarity=-0.014 Sum_probs=61.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCC
Q 007684 107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV 186 (593)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~ 186 (593)
+..+...+...|++++|...|++..+.. +.+...+..+-..+... |++++|.+.+++.....
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~----------------~~~~~A~~~~~~~~~~~- 76 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKL----------------GNYAGAVQDCERAICID- 76 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHh----------------hchHHHHHHHHHHHhcC-
Confidence 5556666666666777766666665542 11344444444444443 36666666666655543
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CcccHHHHHHHHHhcCC
Q 007684 187 DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPP-KLRSYGPALFGFCKLGN 240 (593)
Q Consensus 187 ~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~ 240 (593)
+.+...+..+...+...|++++|.+.+++..+.. | +...+..+..++.+.|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 77 PAYSKAYGRMGLALSSLNKHVEAVAYYKKALELD--PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHhc
Confidence 3345556666666666666666666666655432 3 23344444444444443
No 126
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.62 E-value=0.0012 Score=55.21 Aligned_cols=116 Identities=14% Similarity=0.098 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHh
Q 007684 104 EGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMIT 183 (593)
Q Consensus 104 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~ 183 (593)
...+..+...+.+.|++++|...|++..+.. +.+...+..+-.++... |++++|.+.|++..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~----------------~~~~~A~~~~~~a~~ 78 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKL----------------LEFQLALKDCEECIQ 78 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTT----------------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHh----------------ccHHHHHHHHHHHHH
Confidence 3447777888888888888888888877652 12445555555555554 578888888887776
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcC
Q 007684 184 DKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLG 239 (593)
Q Consensus 184 ~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g 239 (593)
.. +.+..++..+..++...|++++|.+.+++..+.. |+ ...+..+...+.+.|
T Consensus 79 ~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 79 LE-PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD--SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--GGGTHHHHHHHHHHHHHT
T ss_pred hC-CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhc
Confidence 54 4456777777777888888888888887776532 33 334444545544443
No 127
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.61 E-value=0.0014 Score=64.20 Aligned_cols=162 Identities=12% Similarity=0.013 Sum_probs=118.3
Q ss_pred HHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCH-H----HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-CC----
Q 007684 69 CTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPE-G----VLRHKLDMCSKRGDVFEALRLYDDARSNGIT-LS---- 138 (593)
Q Consensus 69 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-~----~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~---- 138 (593)
.+..+...|++++|...+.+... .....+. . .+..+...+...|++++|+..|+++.+.... ++
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~ 154 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELK------KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHT------TCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhc------cccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHH
Confidence 46788899999999999966551 1111222 1 2445677777888999999999999874322 22
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHh----C-CCCCCH-HHHHHHHHHHHhcCChHHHHHH
Q 007684 139 QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMIT----D-KVDPNE-ATFTSVARLAVAKEDPEMAFDL 212 (593)
Q Consensus 139 ~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~----~-g~~p~~-~ty~~li~~~~~~g~~~~A~~l 212 (593)
..+|+.+-..|... |++++|++.|++..+ . +..+.. .+|..+...|.+.|++++|...
T Consensus 155 ~~~~~~lg~~y~~~----------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~ 218 (293)
T 3u3w_A 155 LYIENAIANIYAEN----------------GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQ 218 (293)
T ss_dssp HHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 23567766677775 699999999999874 1 222333 3889999999999999999999
Q ss_pred HHHHHh----CCCCCC-cccHHHHHHHHHhcCC-hhHHHHHHHHHH
Q 007684 213 VKQMKS----FGIPPK-LRSYGPALFGFCKLGN-TDKAYEVDAHMG 252 (593)
Q Consensus 213 ~~~m~~----~g~~p~-~~ty~~li~~~~~~g~-~~~A~~l~~~m~ 252 (593)
+++..+ .+..+. ..+|..+..+|.+.|+ .++|.+.+++..
T Consensus 219 ~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 219 VNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 998764 232233 4678889999999995 699999888865
No 128
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.60 E-value=0.00013 Score=72.29 Aligned_cols=193 Identities=13% Similarity=0.113 Sum_probs=129.4
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCCC-HH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRES-PEGVLRHKLDMCSKRGDVFEALRLYDDARSN----GITLS-QH 140 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~ 140 (593)
......|...|++++|...|.+.+....+ .+... -...|+.+...|.+.|++++|+..|++..+. |-... ..
T Consensus 40 ~~a~~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 40 AKAAVAFKNAKQLEQAKDAYLQEAEAHAN--NRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 44456788899999999998766622221 11111 1234888999999999999999999987643 21111 23
Q ss_pred HHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007684 141 HYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD----KVDP-NEATFTSVARLAVAKEDPEMAFDLVKQ 215 (593)
Q Consensus 141 ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~----g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~ 215 (593)
+++.+-.+|.. |++++|++.|++.... |-.. ...+++.+...|...|++++|...|++
T Consensus 118 ~~~~lg~~~~~-----------------g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 180 (307)
T 2ifu_A 118 ALDRAGKLMEP-----------------LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQK 180 (307)
T ss_dssp HHHHHHHHHTT-----------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHc-----------------CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44444445544 4899999999987642 2111 145788999999999999999999999
Q ss_pred HHhC----CCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---H---HHHHHHHHHHHhcCCHHHHHHH
Q 007684 216 MKSF----GIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE---E---PELSALLKLSVDAKKVDKVYEI 282 (593)
Q Consensus 216 m~~~----g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~---~t~~~Ll~~~~~~g~~~~a~~~ 282 (593)
..+. +..+. ...+..+...+...|+.++|...|++.. . .|+ . .....++.++ ..|+.+.+.++
T Consensus 181 al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 181 EKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 8752 22121 2356667778888899999999999987 3 232 1 2345556655 56777666553
No 129
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.57 E-value=0.0014 Score=54.50 Aligned_cols=102 Identities=14% Similarity=0.088 Sum_probs=56.6
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHH
Q 007684 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEV 247 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l 247 (593)
|++++|.+.|++..... +.+...+..+...+...|++++|.+.+++..... |+ ...+..+...|.+.|+.++|.+.
T Consensus 26 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~ 102 (131)
T 2vyi_A 26 ENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID--PAYSKAYGRMGLALSSLNKHVEAVAY 102 (131)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--ccCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 36666666666665543 3345566666666666666666666666665532 32 34555556666666666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 007684 248 DAHMGESGVVPEEPELSALLKLSVDAK 274 (593)
Q Consensus 248 ~~~m~~~g~~p~~~t~~~Ll~~~~~~g 274 (593)
+++..+..- .+...+..+..++...|
T Consensus 103 ~~~~~~~~p-~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 103 YKKALELDP-DNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHHHHHST-TCHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCc-cchHHHHHHHHHHHHHh
Confidence 666554321 13334444444544444
No 130
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.51 E-value=0.00057 Score=57.86 Aligned_cols=94 Identities=11% Similarity=-0.077 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007684 192 TFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLS 270 (593)
Q Consensus 192 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~ 270 (593)
.+......|.+.|++++|.+.|++..+.. |+ ...|..+..+|.+.|++++|.+.|++..+..- .+...|..+..++
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~ 91 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHH
Confidence 34445555555666666666665555422 32 44555555555566666666666555554321 1334455555556
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 007684 271 VDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 271 ~~~g~~~~a~~~l~~m~~ 288 (593)
...|++++|.+.|++..+
T Consensus 92 ~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 666666666666655544
No 131
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.51 E-value=0.00031 Score=61.40 Aligned_cols=97 Identities=10% Similarity=-0.077 Sum_probs=81.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007684 189 NEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPP-KLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267 (593)
Q Consensus 189 ~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll 267 (593)
+...+..+...+...|++++|...|++..... | +...|..+..+|...|++++|.+.|++.....- -+...+..+.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg 96 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHH
Confidence 44577788889999999999999999998743 4 466788888999999999999999999886431 2456688899
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 007684 268 KLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 268 ~~~~~~g~~~~a~~~l~~m~~ 288 (593)
.+|...|+.++|...|++..+
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999876
No 132
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.51 E-value=0.0046 Score=57.36 Aligned_cols=143 Identities=11% Similarity=0.008 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007684 121 FEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLA 200 (593)
Q Consensus 121 ~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~ 200 (593)
.+|++.|++..+.| +...+..|=..|... ++.++|++.|++..+.| +..++..|...|
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~----------------~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y 60 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSS----------------GDYQKAEYWAQKAAAQG---DGDALALLAQLK 60 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHH----------------TCHHHHHHHHHHHHHTT---CHHHHHHHHHHT
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcC----------------CCHHHHHHHHHHHHHcC---CHHHHHHHHHHH
Confidence 35778888888875 556666665566664 59999999999998876 667888888888
Q ss_pred HhcC----ChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHH
Q 007684 201 VAKE----DPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK----LGNTDKAYEVDAHMGESGVV-PEEPELSALLKLSV 271 (593)
Q Consensus 201 ~~~g----~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g~~-p~~~t~~~Ll~~~~ 271 (593)
.. + +.++|.+.|++..+.| +...+..|-..|.. .++.++|.++|++..+.|.. -+...+..|-..|.
T Consensus 61 ~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~ 136 (212)
T 3rjv_A 61 IR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYA 136 (212)
T ss_dssp TS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHH
T ss_pred Hc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHH
Confidence 88 7 8999999999998865 34567777777876 88999999999999876632 02567888888888
Q ss_pred h----cCCHHHHHHHHHHHHHc
Q 007684 272 D----AKKVDKVYEILHRLRTL 289 (593)
Q Consensus 272 ~----~g~~~~a~~~l~~m~~~ 289 (593)
. .++.++|...|++..+.
T Consensus 137 ~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 137 SGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp HTSSSSCCHHHHHHHHHHHHHT
T ss_pred cCCCCCCCHHHHHHHHHHHHHc
Confidence 8 77999999999999875
No 133
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.50 E-value=0.0014 Score=54.86 Aligned_cols=96 Identities=9% Similarity=-0.054 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007684 191 ATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLS 270 (593)
Q Consensus 191 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~ 270 (593)
..+..+...+...|++++|...+++..+..- .+...+..+...|...|+.++|.+.+++..+..- .+...+..+..++
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHHHH
Confidence 3444444445555555555555554443210 1233444444444455555555555554443211 1233444444455
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 007684 271 VDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 271 ~~~g~~~~a~~~l~~m~~ 288 (593)
...|++++|.+.+++..+
T Consensus 95 ~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 555555555555554443
No 134
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.49 E-value=0.0012 Score=55.75 Aligned_cols=107 Identities=11% Similarity=0.059 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCC----HHHH
Q 007684 191 ATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESG--VVPE----EPEL 263 (593)
Q Consensus 191 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~----~~t~ 263 (593)
.++..+-..+.+.|++++|.+.|++..+. .|+ ...|+.+..+|.+.|++++|.+.+++..+.. ..++ ..+|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 46777888899999999999999998874 355 5678889999999999999999998876422 1122 2357
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHH
Q 007684 264 SALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKII 301 (593)
Q Consensus 264 ~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l 301 (593)
..+..++...|++++|.+.|++..+ ..|++.+...|
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~l 122 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHHH
Confidence 7788888899999999999998766 34666655444
No 135
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.48 E-value=0.0019 Score=56.63 Aligned_cols=103 Identities=12% Similarity=-0.130 Sum_probs=86.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007684 189 NEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267 (593)
Q Consensus 189 ~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll 267 (593)
+...+..+...+.+.|++++|...|++.... .|+ ...|..+..+|.+.|++++|.+.|++..+..- -+...|..+.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~~lg 111 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHHHHH
Confidence 3447888888999999999999999999884 355 67888899999999999999999999986442 2356688999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHccCCCCHH
Q 007684 268 KLSVDAKKVDKVYEILHRLRTLVRQVSES 296 (593)
Q Consensus 268 ~~~~~~g~~~~a~~~l~~m~~~~~~~~~~ 296 (593)
.+|...|+.++|...|++..+. .|+..
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 9999999999999999999873 35543
No 136
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.46 E-value=0.0029 Score=53.38 Aligned_cols=93 Identities=11% Similarity=0.068 Sum_probs=79.9
Q ss_pred ccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhH
Q 007684 165 NDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDK 243 (593)
Q Consensus 165 ~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~ 243 (593)
+.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++++|.+.+++..+.. |+ ...|..+..+|...|++++
T Consensus 23 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~ 99 (126)
T 4gco_A 23 YFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD--SKFIKGYIRKAACLVAMREWSK 99 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHCCCHHH
Confidence 456799999999999988776 6678899999999999999999999999998743 54 6789999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHH
Q 007684 244 AYEVDAHMGESGVVPEEPE 262 (593)
Q Consensus 244 A~~l~~~m~~~g~~p~~~t 262 (593)
|.+.|++..+. .|+...
T Consensus 100 A~~~~~~al~l--~P~~~~ 116 (126)
T 4gco_A 100 AQRAYEDALQV--DPSNEE 116 (126)
T ss_dssp HHHHHHHHHHH--CTTCHH
T ss_pred HHHHHHHHHHH--CcCCHH
Confidence 99999998864 355433
No 137
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.45 E-value=0.0058 Score=64.05 Aligned_cols=219 Identities=11% Similarity=0.022 Sum_probs=103.9
Q ss_pred CCChhhHHhhcCCccccchHHHHHHHhcCCCc---ccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCC-----C
Q 007684 48 FTKPITDIKQNRFSADLTTGLCTLAFSKKSTV---NESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRG-----D 119 (593)
Q Consensus 48 ~~~~~~~m~~~g~~~~~~~~~li~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~ 119 (593)
+...+....+.|.+ +.. ..|-..|...|+. ++|...|.... .. +...+..|-..+...+ +
T Consensus 22 A~~~~~~aa~~g~~-~A~-~~Lg~~y~~~g~~~d~~~A~~~~~~A~-------~~---~~~A~~~Lg~~~~~~~~~~~~~ 89 (452)
T 3e4b_A 22 AQQNYQQLAELGYS-EAQ-VGLADIQVGTRDPAQIKQAEATYRAAA-------DT---SPRAQARLGRLLAAKPGATEAE 89 (452)
T ss_dssp HHHHHHHHHHHTCC-TGG-GTCC--------------------------------------CHHHHHHHHHTC--CCHHH
T ss_pred HHHHHHHHHHCCCH-HHH-HHHHHHHHccCCCCCHHHHHHHHHHHH-------hC---CHHHHHHHHHHHHhCCCCCCcC
Confidence 55555555566633 222 2233334557777 89999996665 22 3334555555455544 8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCC-------------------cccc----cccHHHHHH
Q 007684 120 VFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDR-------------------ENDS----NLGLKRGFE 176 (593)
Q Consensus 120 ~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~-------------------~~~~----~g~~~~a~~ 176 (593)
.++|+.+|++..+.|... .+..|-..|...+..+....... .+.. ....+.+..
T Consensus 90 ~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~ 166 (452)
T 3e4b_A 90 HHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVER 166 (452)
T ss_dssp HHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHH
Confidence 899999999999887543 34444445554432111100000 0000 012333333
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc----CChhHHHHHHH
Q 007684 177 IFQQMITDKVDPNEATFTSVARLAVAKE---DPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKL----GNTDKAYEVDA 249 (593)
Q Consensus 177 l~~~M~~~g~~p~~~ty~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~----g~~~~A~~l~~ 249 (593)
+++.... + .|+ ++..|...|...| +.++|++.|++..+.|- ++...+..+...|... ++.++|.+.|+
T Consensus 167 ~~~~a~~-~-~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~ 241 (452)
T 3e4b_A 167 ICKAALN-T-TDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLE 241 (452)
T ss_dssp HHHHHTT-T-CTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHH
T ss_pred HHHHHHc-C-CHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 3333322 2 233 6667777777777 77777777777777654 3333334455555443 57777777777
Q ss_pred HHHhCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHcc
Q 007684 250 HMGESGVVPEEPELSALLKL-S--VDAKKVDKVYEILHRLRTLV 290 (593)
Q Consensus 250 ~m~~~g~~p~~~t~~~Ll~~-~--~~~g~~~~a~~~l~~m~~~~ 290 (593)
+.. .| +...+..|-.. + ...++.++|.+.|++..+.+
T Consensus 242 ~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g 281 (452)
T 3e4b_A 242 KIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD 281 (452)
T ss_dssp HHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT
T ss_pred HHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC
Confidence 765 32 33444455544 3 34677777777777776654
No 138
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.42 E-value=0.0009 Score=54.01 Aligned_cols=99 Identities=8% Similarity=-0.107 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CCHHHHHHHHH
Q 007684 190 EATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVV-PEEPELSALLK 268 (593)
Q Consensus 190 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~Ll~ 268 (593)
...+..+...+...|++++|...+++..+..- .+...|..+...|...|++++|.+.+++..+..-. .+...+..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34566777888888999999999988876432 23567777888888899999999999888764311 14667888888
Q ss_pred HHHhc-CCHHHHHHHHHHHHHc
Q 007684 269 LSVDA-KKVDKVYEILHRLRTL 289 (593)
Q Consensus 269 ~~~~~-g~~~~a~~~l~~m~~~ 289 (593)
++... |+.++|.+.+++..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHhCCHHHHHHHHHHHhhc
Confidence 88889 9999999998888764
No 139
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.40 E-value=0.0027 Score=53.64 Aligned_cols=99 Identities=11% Similarity=0.028 Sum_probs=85.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 007684 187 DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSA 265 (593)
Q Consensus 187 ~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 265 (593)
+.+...+..+...+...|++++|...|++..... |+ ...|..+...|...|++++|...+++..+..- -+...+..
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~ 82 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFF 82 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHH
Confidence 4567889999999999999999999999988743 44 57888899999999999999999999886542 25667888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 007684 266 LLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 266 Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
+..++...|++++|...+++..+
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999876
No 140
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.40 E-value=0.0014 Score=64.31 Aligned_cols=164 Identities=11% Similarity=0.002 Sum_probs=115.8
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC---CCC
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPE-----GVLRHKLDMCSKRGDVFEALRLYDDARSNGI---TLS 138 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~ 138 (593)
...+..+...|++++|...+.+.+. .....+. ..+..+...+...|++++|+..|++..+... .+.
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 152 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELK------KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY 152 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH------TCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhc------cccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH
Confidence 4566778899999999888854441 1111111 1244466667888999999999999875421 111
Q ss_pred --HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHh---C-CCCC--CHHHHHHHHHHHHhcCChHHHH
Q 007684 139 --QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMIT---D-KVDP--NEATFTSVARLAVAKEDPEMAF 210 (593)
Q Consensus 139 --~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~---~-g~~p--~~~ty~~li~~~~~~g~~~~A~ 210 (593)
..+|+.+-..|... |++++|.+.|++..+ . +-.+ ...+|..+...|...|++++|.
T Consensus 153 ~~~~~~~~lg~~y~~~----------------~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al 216 (293)
T 2qfc_A 153 QNLYIENAIANIYAEN----------------GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESL 216 (293)
T ss_dssp HHHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHH
Confidence 34666666677775 599999999998763 2 1111 1258999999999999999999
Q ss_pred HHHHHHHhC----CCCCC-cccHHHHHHHHHhcCChhHH-HHHHHHHH
Q 007684 211 DLVKQMKSF----GIPPK-LRSYGPALFGFCKLGNTDKA-YEVDAHMG 252 (593)
Q Consensus 211 ~l~~~m~~~----g~~p~-~~ty~~li~~~~~~g~~~~A-~~l~~~m~ 252 (593)
..+++..+. +.... ..+|..+...|.+.|+.++| ...+++..
T Consensus 217 ~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 217 YQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 999987642 21111 46788899999999999999 77777654
No 141
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.39 E-value=0.0015 Score=56.90 Aligned_cols=94 Identities=6% Similarity=-0.146 Sum_probs=50.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCC
Q 007684 107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV 186 (593)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~ 186 (593)
+..+...+.+.|++++|+..|++..+.. +.+...|..+-.+|... |++++|++.|++.....
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~----------------g~~~~A~~~~~~al~l~- 85 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAM----------------GQYDLAIHSYSYGAVMD- 85 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHH----------------hhHHHHHHHHHHHHhcC-
Confidence 4455555666666666666666655442 11333443333344443 46666666666655543
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007684 187 DPNEATFTSVARLAVAKEDPEMAFDLVKQMKS 218 (593)
Q Consensus 187 ~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 218 (593)
+-+..++..+..++...|++++|.+.|++..+
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33445555566666666666666666665544
No 142
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.31 E-value=0.0041 Score=51.55 Aligned_cols=111 Identities=12% Similarity=0.102 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCC----HHHH
Q 007684 190 EATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESG--VVPE----EPEL 263 (593)
Q Consensus 190 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~----~~t~ 263 (593)
..++..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|...+++..... ..++ ...+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 3567788888999999999999999988743 1345678888889999999999999999887532 1223 5678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 007684 264 SALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIED 303 (593)
Q Consensus 264 ~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~ 303 (593)
..+..++...|++++|.+.+++..+. .|++.....+..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 120 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 88888999999999999999998774 345555544443
No 143
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.30 E-value=0.0023 Score=62.45 Aligned_cols=96 Identities=9% Similarity=-0.032 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHH
Q 007684 104 EGVLRHKLDMCSKRGDVFEALRLYDDARSNGITL-SQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMI 182 (593)
Q Consensus 104 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~ 182 (593)
...+..+...+.+.|++++|+..|++..+. .| +...|..+-.++... |++++|.+.+++..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~----------------~~~~~A~~~~~~al 65 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKM----------------QQPEQALADCRRAL 65 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHh----------------cCHHHHHHHHHHHH
Confidence 456788888999999999999999998876 44 556666555566665 69999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007684 183 TDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS 218 (593)
Q Consensus 183 ~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 218 (593)
+.. +-+...+..+..++...|++++|...|++..+
T Consensus 66 ~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 66 ELD-GQSVKAHFFLGQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp TSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 765 55778899999999999999999999999865
No 144
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.29 E-value=0.0018 Score=53.87 Aligned_cols=98 Identities=11% Similarity=0.049 Sum_probs=78.8
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCC----cccHHHHHHHHHhcCChh
Q 007684 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGI--PPK----LRSYGPALFGFCKLGNTD 242 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~----~~ty~~li~~~~~~g~~~ 242 (593)
|++++|...|++..... +.+...+..+...+...|++++|...+++.....- .++ ..+|..+...|.+.|+++
T Consensus 18 ~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 96 (131)
T 1elr_A 18 KDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYK 96 (131)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHH
Confidence 69999999999988765 55788899999999999999999999999876321 122 567888899999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007684 243 KAYEVDAHMGESGVVPEEPELSALLKL 269 (593)
Q Consensus 243 ~A~~l~~~m~~~g~~p~~~t~~~Ll~~ 269 (593)
+|.+.|++..+.. |+......+...
T Consensus 97 ~A~~~~~~~~~~~--~~~~~~~~l~~~ 121 (131)
T 1elr_A 97 DAIHFYNKSLAEH--RTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCHHHHHHHHHH
Confidence 9999999988743 565555544443
No 145
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.29 E-value=0.0013 Score=55.67 Aligned_cols=94 Identities=9% Similarity=0.049 Sum_probs=74.3
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCC----cccHHHHHHHHHhcCChh
Q 007684 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG--IPPK----LRSYGPALFGFCKLGNTD 242 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~----~~ty~~li~~~~~~g~~~ 242 (593)
|++++|++.|++..+.. +-+..+|+.+..+|...|++++|++.+++..+.. ..++ ..+|..+..+|...|+++
T Consensus 22 ~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~ 100 (127)
T 4gcn_A 22 KDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLS 100 (127)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHH
Confidence 69999999999988765 5578899999999999999999999999987521 1111 136777888889999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHH
Q 007684 243 KAYEVDAHMGESGVVPEEPELSA 265 (593)
Q Consensus 243 ~A~~l~~~m~~~g~~p~~~t~~~ 265 (593)
+|.+.|++.... .||..+...
T Consensus 101 ~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 101 LAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHHHHHHHHHhh--CcCHHHHHH
Confidence 999999987753 366554433
No 146
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.28 E-value=0.0065 Score=49.16 Aligned_cols=97 Identities=10% Similarity=0.002 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007684 190 EATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKL 269 (593)
Q Consensus 190 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~ 269 (593)
...+..+...+...|++++|.+.+++.....- .+...+..+...|...|++++|.+.+++..+..- .+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHH
Confidence 45677788888899999999999999877431 2456778888888899999999999998876432 246678888888
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 007684 270 SVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 270 ~~~~g~~~~a~~~l~~m~~ 288 (593)
+...|+.++|.+.+++..+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 9999999999999988876
No 147
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.27 E-value=0.004 Score=62.47 Aligned_cols=123 Identities=11% Similarity=-0.017 Sum_probs=85.1
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 007684 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVD 248 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 248 (593)
|++++|++.|++.......... -..+.+.++- .+ ....|..+..+|.+.|++++|.+.+
T Consensus 161 g~~~~A~~~y~~Al~~~p~~~~-------------~~~~~~~~~~-~~-------~~~~~~nla~~~~~~g~~~~A~~~~ 219 (336)
T 1p5q_A 161 GKYKQALLQYKKIVSWLEYESS-------------FSNEEAQKAQ-AL-------RLASHLNLAMCHLKLQAFSAAIESC 219 (336)
T ss_dssp TCHHHHHHHHHHHHHHTTTCCC-------------CCSHHHHHHH-HH-------HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhcccc-------------CChHHHHHHH-HH-------HHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5999999999988764311100 0112222111 11 1367888999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhhhc
Q 007684 249 AHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIG 314 (593)
Q Consensus 249 ~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~~~ 314 (593)
++..+.. ..+...|..+..+|...|++++|...|++..+..- -+...+..+...+...+.....
T Consensus 220 ~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 220 NKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 9998754 23667799999999999999999999999987422 2345566666666655554443
No 148
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.27 E-value=0.0053 Score=60.60 Aligned_cols=204 Identities=10% Similarity=0.022 Sum_probs=147.4
Q ss_pred Cccccch--HHHHHHHhcCC--CcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHH----HcC---CCHHHHHHHHH
Q 007684 60 FSADLTT--GLCTLAFSKKS--TVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMC----SKR---GDVFEALRLYD 128 (593)
Q Consensus 60 ~~~~~~~--~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---g~~~~A~~l~~ 128 (593)
+.|+..| +.=-..+...| .+++++..+..++ ...+....+|+.--..+ .+. +++++++.+++
T Consensus 62 ~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L-------~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~ 134 (306)
T 3dra_A 62 ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIA-------LDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILE 134 (306)
T ss_dssp HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHH-------HHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHH
T ss_pred HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHH-------HHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence 4466666 55444555666 7888888887666 33344444544433333 444 78999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-
Q 007684 129 DARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLK--RGFEIFQQMITDKVDPNEATFTSVARLAVAKED- 205 (593)
Q Consensus 129 ~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~--~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~- 205 (593)
.+.+..- -|..+|+----+.... |.++ ++++.+++|.+.. +-|-.+|+.-.-.....+.
T Consensus 135 ~~l~~~p-kny~aW~~R~~vl~~l----------------~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~ 196 (306)
T 3dra_A 135 AMLSSDP-KNHHVWSYRKWLVDTF----------------DLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHL 196 (306)
T ss_dssp HHHHHCT-TCHHHHHHHHHHHHHT----------------TCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGG
T ss_pred HHHHhCC-CCHHHHHHHHHHHHHh----------------cccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccc
Confidence 9997742 3667777655555554 3556 9999999999877 5688889888777777776
Q ss_pred -----hHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhH-HHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHH
Q 007684 206 -----PEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDK-AYEVDAHMGESG--VVPEEPELSALLKLSVDAKKVD 277 (593)
Q Consensus 206 -----~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~-A~~l~~~m~~~g--~~p~~~t~~~Ll~~~~~~g~~~ 277 (593)
++++++.++++..... -|...|+..-..+.+.|+... +.++..+..+.+ -..+...+..+.++|.+.|+.+
T Consensus 197 ~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~ 275 (306)
T 3dra_A 197 ATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYN 275 (306)
T ss_dssp CCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHH
T ss_pred chhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHH
Confidence 8999999999987543 346778888888888887544 556777665433 1346778999999999999999
Q ss_pred HHHHHHHHHHHc
Q 007684 278 KVYEILHRLRTL 289 (593)
Q Consensus 278 ~a~~~l~~m~~~ 289 (593)
+|.++++.+.+.
T Consensus 276 ~A~~~~~~l~~~ 287 (306)
T 3dra_A 276 ESRTVYDLLKSK 287 (306)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999999999763
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.25 E-value=0.0067 Score=49.09 Aligned_cols=85 Identities=9% Similarity=0.026 Sum_probs=73.2
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 007684 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVD 248 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 248 (593)
|++++|.+.|++..... +.+...+..+...+...|++++|...+++..+..- .+...+..+..+|...|+.++|.+.+
T Consensus 18 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~ 95 (118)
T 1elw_A 18 GNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALEFLNRFEEAKRTY 95 (118)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 69999999999998765 45788899999999999999999999999987432 24677888999999999999999999
Q ss_pred HHHHhCC
Q 007684 249 AHMGESG 255 (593)
Q Consensus 249 ~~m~~~g 255 (593)
++..+..
T Consensus 96 ~~~~~~~ 102 (118)
T 1elw_A 96 EEGLKHE 102 (118)
T ss_dssp HHHHTTC
T ss_pred HHHHHcC
Confidence 9988643
No 150
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.0033 Score=52.50 Aligned_cols=96 Identities=17% Similarity=0.051 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007684 190 EATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268 (593)
Q Consensus 190 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~ 268 (593)
...+..+...+.+.|++++|...|++..+.. |+ ...|..+..+|.+.|++++|.+.+++..+..- -+...|..+..
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 80 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHH
Confidence 3467777888889999999999999987743 43 57788888999999999999999998886432 24566888888
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 007684 269 LSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 269 ~~~~~g~~~~a~~~l~~m~~ 288 (593)
++...|++++|...|++..+
T Consensus 81 ~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 81 AQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHH
Confidence 99999999999999998876
No 151
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.24 E-value=0.0013 Score=69.23 Aligned_cols=135 Identities=12% Similarity=-0.013 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC
Q 007684 105 GVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD 184 (593)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~ 184 (593)
..+..+-..|.+.|++++|+..|++..+. .|+... . .-+...+ ...
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~----------~-----------------~~~~~~~-~~~---- 314 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYG----------L-----------------SEKESKA-SES---- 314 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCS----------C-----------------CHHHHHH-HHH----
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hccccc----------C-----------------ChHHHHH-HHH----
Confidence 35888899999999999999999998764 222100 0 0000000 000
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHH
Q 007684 185 KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE-EPE 262 (593)
Q Consensus 185 g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t 262 (593)
....+|..+..+|.+.|++++|...+++..+.. |+ ...|..+..+|...|++++|...|++..+. .|+ ...
T Consensus 315 ---~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a 387 (457)
T 1kt0_A 315 ---FLLAAFLNLAMCYLKLREYTKAVECCDKALGLD--SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAA 387 (457)
T ss_dssp ---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CH
T ss_pred ---HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHH
Confidence 012345555555555555555555555555422 22 344555555555556666665555555532 222 223
Q ss_pred HHHHHHHHHhcCCHHHHH
Q 007684 263 LSALLKLSVDAKKVDKVY 280 (593)
Q Consensus 263 ~~~Ll~~~~~~g~~~~a~ 280 (593)
+..+..++.+.|+.+++.
T Consensus 388 ~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 388 RLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555554443
No 152
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.23 E-value=0.0043 Score=68.31 Aligned_cols=208 Identities=8% Similarity=-0.072 Sum_probs=143.9
Q ss_pred HHHHhcCCCcccCC-CCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC---------CCC-
Q 007684 70 TLAFSKKSTVNESS-APNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGI---------TLS- 138 (593)
Q Consensus 70 i~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---------~p~- 138 (593)
+..+-..|+.++|. .++.... ...+.+...+-..+...-+.|+++.|.++|+.+.+... .|+
T Consensus 350 a~~~~~~~~~~~a~r~il~rAi-------~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~ 422 (679)
T 4e6h_A 350 ANYQGEKNTDSTVITKYLKLGQ-------QCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTN 422 (679)
T ss_dssp HHHHHHHSCCTTHHHHHHHHHH-------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHH-------HhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcc
Confidence 33445567777775 6664333 23334455577788888899999999999999886410 132
Q ss_pred -----------HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc-CC
Q 007684 139 -----------QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD-KVDPNEATFTSVARLAVAK-ED 205 (593)
Q Consensus 139 -----------~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~-g~~p~~~ty~~li~~~~~~-g~ 205 (593)
...|...+....+. |.++.|..+|....+. + ......|...+..-.+. ++
T Consensus 423 ~~~~~~~~~~~~~vWi~y~~~erR~----------------~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 423 ESAINQLKSKLTYVYCVYMNTMKRI----------------QGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----------------HCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSC
T ss_pred hhhhhhhccchHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCC
Confidence 23455556655554 5899999999999876 3 22233343333333344 45
Q ss_pred hHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHH
Q 007684 206 PEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP--EEPELSALLKLSVDAKKVDKVYEI 282 (593)
Q Consensus 206 ~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~Ll~~~~~~g~~~~a~~~ 282 (593)
.+.|.++|+...+. . |+ ...+...+......|+.+.|..+|+........+ ....|...++.-.+.|+.+.+..+
T Consensus 486 ~e~Ar~ife~~Lk~-~-p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v 563 (679)
T 4e6h_A 486 TKTACKVLELGLKY-F-ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTL 563 (679)
T ss_dssp CHHHHHHHHHHHHH-H-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred HHHHHHHHHHHHHH-C-CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999998874 3 44 3445677777778999999999999988654322 235688999998999999999999
Q ss_pred HHHHHHccCCCCHHHHHHHHHHH
Q 007684 283 LHRLRTLVRQVSESTFKIIEDWF 305 (593)
Q Consensus 283 l~~m~~~~~~~~~~t~~~l~~~~ 305 (593)
.+++.+. .|+......+.+-|
T Consensus 564 ~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 564 EKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHH--STTCCHHHHHHHHT
T ss_pred HHHHHHh--CCCCcHHHHHHHHh
Confidence 9999874 35555666666655
No 153
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.21 E-value=0.0034 Score=53.91 Aligned_cols=93 Identities=8% Similarity=-0.155 Sum_probs=57.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCC
Q 007684 107 LRHKLDMCSKRGDVFEALRLYDDARSNGITL-SQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDK 185 (593)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g 185 (593)
+..+...+.+.|++++|...|++..+. .| +...|..+-.+|... |++++|+..|++.....
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~----------------g~~~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSL----------------GLYEQALQSYSYGALMD 82 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHH----------------hhHHHHHHHHHHHHhcC
Confidence 455556666777777777777776655 23 334444433344443 46777777777766554
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007684 186 VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS 218 (593)
Q Consensus 186 ~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 218 (593)
+-+...+..+..++...|++++|.+.|++..+
T Consensus 83 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 83 -INEPRFPFHAAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp -TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555666666677777777777777776654
No 154
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.21 E-value=0.0055 Score=52.21 Aligned_cols=100 Identities=14% Similarity=-0.029 Sum_probs=84.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH
Q 007684 187 DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK----LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPE 262 (593)
Q Consensus 187 ~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 262 (593)
+.+...+..+...+...|++++|.+.|++..+. .|+ ...|..+...|...|++++|.+.+++..... ..+...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHH
Confidence 346778888999999999999999999999874 365 5778888899999999999999999987643 125667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007684 263 LSALLKLSVDAKKVDKVYEILHRLRTL 289 (593)
Q Consensus 263 ~~~Ll~~~~~~g~~~~a~~~l~~m~~~ 289 (593)
+..+..++...|+.++|...|++..+.
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 888899999999999999999998763
No 155
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.20 E-value=0.0037 Score=55.12 Aligned_cols=98 Identities=17% Similarity=0.082 Sum_probs=82.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007684 189 NEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPP-KLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267 (593)
Q Consensus 189 ~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll 267 (593)
+...+..+...+...|++++|.+.|++..+.. | +...|..+..+|.+.|++++|.+.|++..+..- -+...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 45578888889999999999999999998743 4 467888899999999999999999999886542 2467788899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 007684 268 KLSVDAKKVDKVYEILHRLRTL 289 (593)
Q Consensus 268 ~~~~~~g~~~~a~~~l~~m~~~ 289 (593)
.+|...|++++|...|++..+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999998763
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.20 E-value=0.0035 Score=53.82 Aligned_cols=96 Identities=8% Similarity=-0.088 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007684 190 EATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPP-KLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268 (593)
Q Consensus 190 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~ 268 (593)
...+..+...+...|++++|...|++..... | +...|..+..+|.+.|++++|...|++.....- -+...+..+..
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 94 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHH
Confidence 3456677788899999999999999998743 5 456788888999999999999999999886542 24456788888
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 007684 269 LSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 269 ~~~~~g~~~~a~~~l~~m~~ 288 (593)
+|...|++++|...|++..+
T Consensus 95 ~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999998876
No 157
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.19 E-value=0.0027 Score=51.09 Aligned_cols=85 Identities=11% Similarity=0.024 Sum_probs=73.4
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CcccHHHHHHHHHhc-CChhHHH
Q 007684 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPP--KLRSYGPALFGFCKL-GNTDKAY 245 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~ty~~li~~~~~~-g~~~~A~ 245 (593)
|++++|...|++..+.. +.+..++..+...+...|++++|.+.+++..+..- . +...+..+...|.+. |+.++|.
T Consensus 20 ~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~A~ 97 (112)
T 2kck_A 20 GNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE-DEYNKDVWAAKADALRYIEGKEVEAE 97 (112)
T ss_dssp CCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC-CTTCHHHHHHHHHHHTTCSSCSHHHH
T ss_pred hhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHHHHHhCCHHHHH
Confidence 69999999999988765 55778899999999999999999999999987532 2 357788899999999 9999999
Q ss_pred HHHHHHHhCC
Q 007684 246 EVDAHMGESG 255 (593)
Q Consensus 246 ~l~~~m~~~g 255 (593)
+.+++.....
T Consensus 98 ~~~~~~~~~~ 107 (112)
T 2kck_A 98 IAEARAKLEH 107 (112)
T ss_dssp HHHHHHGGGC
T ss_pred HHHHHHhhcc
Confidence 9999988644
No 158
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.17 E-value=0.011 Score=49.70 Aligned_cols=97 Identities=10% Similarity=-0.048 Sum_probs=81.1
Q ss_pred CHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007684 138 SQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMK 217 (593)
Q Consensus 138 ~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~ 217 (593)
+...|..+-..+... |++++|.+.|++..... +.+...+..+...+...|++++|...+++..
T Consensus 8 ~~~~~~~~g~~~~~~----------------~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 70 (137)
T 3q49_B 8 SAQELKEQGNRLFVG----------------RKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRAL 70 (137)
T ss_dssp CHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHh----------------CcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 455565555566654 59999999999988765 5578899999999999999999999999998
Q ss_pred hCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007684 218 SFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGE 253 (593)
Q Consensus 218 ~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 253 (593)
+.. |+ ...|..+..+|...|++++|.+.|++..+
T Consensus 71 ~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 71 ELD--GQSVKAHFFLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhC--chhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 743 44 67888899999999999999999998874
No 159
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.17 E-value=0.013 Score=49.86 Aligned_cols=98 Identities=13% Similarity=-0.057 Sum_probs=71.8
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHH
Q 007684 102 SPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLS----QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177 (593)
Q Consensus 102 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l 177 (593)
.....+..+...+.+.|++++|..+|++..+. .|+ ...|..+-.+|... |++++|.+.
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~----------------~~~~~A~~~ 87 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKL----------------EDYDKAETE 87 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHT----------------TCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHH----------------ccHHHHHHH
Confidence 34556888888888999999999999988876 455 34444444455554 588888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007684 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS 218 (593)
Q Consensus 178 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 218 (593)
|++..+.. +.+...+..+..++...|++++|.+.+++..+
T Consensus 88 ~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 88 ASKAIEKD-GGDVKALYRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHT-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhhC-ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88877654 34566777778888888888888888887766
No 160
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.15 E-value=0.0075 Score=54.93 Aligned_cols=98 Identities=12% Similarity=-0.021 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC--------------cccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 007684 190 EATFTSVARLAVAKEDPEMAFDLVKQMKSFGI-PPK--------------LRSYGPALFGFCKLGNTDKAYEVDAHMGES 254 (593)
Q Consensus 190 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~--------------~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 254 (593)
...+..+...+...|++++|.+.|++..+..- .|+ ...|..+..+|.+.|++++|...+++....
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34677788889999999999999999986321 121 167888889999999999999999998864
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 255 GVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 255 g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
. ..+...+..+..+|...|++++|...|++..+
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3 23567788899999999999999999998876
No 161
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.12 E-value=0.0056 Score=51.04 Aligned_cols=83 Identities=11% Similarity=0.050 Sum_probs=73.4
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHH
Q 007684 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEV 247 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l 247 (593)
|++++|++.|++..+.. +.+...|..+..++.+.|++++|...+++..+.. |+ ...|..+..+|...|+.++|.+.
T Consensus 18 ~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~ 94 (126)
T 3upv_A 18 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKATAQIAVKEYASALET 94 (126)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence 69999999999988765 5678899999999999999999999999998743 54 56888899999999999999999
Q ss_pred HHHHHhC
Q 007684 248 DAHMGES 254 (593)
Q Consensus 248 ~~~m~~~ 254 (593)
|++..+.
T Consensus 95 ~~~al~~ 101 (126)
T 3upv_A 95 LDAARTK 101 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998753
No 162
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.11 E-value=0.0014 Score=69.28 Aligned_cols=121 Identities=7% Similarity=0.016 Sum_probs=93.1
Q ss_pred cccHHHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHh-----CC-CCCC-cccHHHHHH
Q 007684 168 NLGLKRGFEIFQQMITD---KVDP----NEATFTSVARLAVAKEDPEMAFDLVKQMKS-----FG-IPPK-LRSYGPALF 233 (593)
Q Consensus 168 ~g~~~~a~~l~~~M~~~---g~~p----~~~ty~~li~~~~~~g~~~~A~~l~~~m~~-----~g-~~p~-~~ty~~li~ 233 (593)
+|++++|..++++..+. -+.| ...++++|..+|...|++++|..++++..+ .| -.|+ ..+|+.|..
T Consensus 322 qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 401 (490)
T 3n71_A 322 EGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGL 401 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 47999999999887642 1222 345899999999999999999999998753 22 2344 468999999
Q ss_pred HHHhcCChhHHHHHHHHHHh-----CCCC-CCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 234 GFCKLGNTDKAYEVDAHMGE-----SGVV-PEEPE-LSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 234 ~~~~~g~~~~A~~l~~~m~~-----~g~~-p~~~t-~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
.|...|++++|+.++++..+ .|-. |+... .+.|-.++...+.+++|+.++.++++
T Consensus 402 ~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 402 TNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998763 2322 33333 55666777788999999999999976
No 163
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.11 E-value=0.0032 Score=66.60 Aligned_cols=117 Identities=11% Similarity=0.048 Sum_probs=91.1
Q ss_pred CcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCCh
Q 007684 163 RENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNT 241 (593)
Q Consensus 163 ~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~ 241 (593)
..+.+.|++++|.+.|++..+.. +-+..+|..+..+|.+.|++++|.+.+++..+. .|+ ...|..+..+|.+.|+.
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 34556789999999999988765 456889999999999999999999999999885 354 57888899999999999
Q ss_pred hHHHHHHHHHHhCCCCCC-HHHHHHHHHH--HHhcCCHHHHHHHHH
Q 007684 242 DKAYEVDAHMGESGVVPE-EPELSALLKL--SVDAKKVDKVYEILH 284 (593)
Q Consensus 242 ~~A~~l~~~m~~~g~~p~-~~t~~~Ll~~--~~~~g~~~~a~~~l~ 284 (593)
++|.+.|++..+.. |+ ...+..+..+ +.+.|++++|.++++
T Consensus 91 ~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999988643 22 2234444444 788899999998887
No 164
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.10 E-value=0.0026 Score=65.67 Aligned_cols=203 Identities=10% Similarity=-0.006 Sum_probs=134.6
Q ss_pred HHHhcCCCcccCCCCcccccchHHhhhhc----C------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCCCH
Q 007684 71 LAFSKKSTVNESSAPNTGTMSNKSKKKAR----R------ESPEGVLRHKLDMCSKRGDVFEALRLYDDARSN-GITLSQ 139 (593)
Q Consensus 71 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~ 139 (593)
..+.+.|++++|.+.|.+.+......... . ...+..+..+...|.+.|++++|.+++..+.+. +-.++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 34566677777777765544111000000 0 001234788999999999999999999987643 111222
Q ss_pred H---HHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhcCChHHHHH
Q 007684 140 H---HYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMIT----DKVDPN-EATFTSVARLAVAKEDPEMAFD 211 (593)
Q Consensus 140 ~---ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~----~g~~p~-~~ty~~li~~~~~~g~~~~A~~ 211 (593)
. ....++..+... .|..+.|.+++++... .+..+. ..++..+...+...|++++|..
T Consensus 92 ~~~~~~~~~l~~~~~~---------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 156 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQV---------------PDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLA 156 (434)
T ss_dssp HHHHHHHHHHHHHCSC---------------CSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHH
Confidence 1 223334433333 3689999999988653 343444 3578889999999999999999
Q ss_pred HHHHHHh--CCC--CCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHH
Q 007684 212 LVKQMKS--FGI--PPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGES----GVVPE--EPELSALLKLSVDAKKVDKVY 280 (593)
Q Consensus 212 l~~~m~~--~g~--~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~--~~t~~~Ll~~~~~~g~~~~a~ 280 (593)
++++... .+. .|. ..+|..++..|...|++++|..++++.... +..+. ...+..+...+...|++++|.
T Consensus 157 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~ 236 (434)
T 4b4t_Q 157 LINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAF 236 (434)
T ss_dssp HHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHH
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 9998854 222 122 357899999999999999999999987631 22112 234666777778899999999
Q ss_pred HHHHHHHH
Q 007684 281 EILHRLRT 288 (593)
Q Consensus 281 ~~l~~m~~ 288 (593)
..+.+..+
T Consensus 237 ~~~~~a~~ 244 (434)
T 4b4t_Q 237 SYFFESFE 244 (434)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877654
No 165
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.09 E-value=0.0031 Score=54.37 Aligned_cols=130 Identities=13% Similarity=0.002 Sum_probs=71.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHH
Q 007684 106 VLRHKLDMCSKRGDVFEALRLYDDARSNGI-TLSQ----HHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQ 180 (593)
Q Consensus 106 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~----~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~ 180 (593)
.+..+-..+...|++++|+..+++..+..- ..+. .++..+-..+... |++++|.+.+++
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~----------------g~~~~A~~~~~~ 74 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFL----------------GEFETASEYYKK 74 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT----------------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHc----------------CCHHHHHHHHHH
Confidence 477888888999999999999988765411 0111 2333333344443 477777777776
Q ss_pred HHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC-cccHHHHHHHHHhcCChhHHHHHHHH
Q 007684 181 MITD----KVDP-NEATFTSVARLAVAKEDPEMAFDLVKQMKSF----GIPPK-LRSYGPALFGFCKLGNTDKAYEVDAH 250 (593)
Q Consensus 181 M~~~----g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~ 250 (593)
.... +-.+ ...++..+...+...|++++|.+.+++..+. +-.+. ..++..+...|...|+.++|.+.+++
T Consensus 75 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 154 (164)
T 3ro3_A 75 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 154 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 5432 1111 1335566666666677777777666665431 11011 22344444445555555555555544
Q ss_pred H
Q 007684 251 M 251 (593)
Q Consensus 251 m 251 (593)
.
T Consensus 155 a 155 (164)
T 3ro3_A 155 H 155 (164)
T ss_dssp H
T ss_pred H
Confidence 3
No 166
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.08 E-value=0.013 Score=57.06 Aligned_cols=97 Identities=10% Similarity=-0.003 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007684 189 NEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPP-KLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267 (593)
Q Consensus 189 ~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll 267 (593)
+...+..+...+...|++++|...|++..+. .| +...|..+..+|.+.|++++|.+.+++..+.. .-+...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 3445555666666666666666666666552 23 34555556666666666666666666655432 12334455666
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 007684 268 KLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 268 ~~~~~~g~~~~a~~~l~~m~~ 288 (593)
.+|...|++++|...|++..+
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666665544
No 167
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.06 E-value=0.0028 Score=54.70 Aligned_cols=120 Identities=8% Similarity=-0.069 Sum_probs=90.2
Q ss_pred ccHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC-cccHHHHHHHHHhc
Q 007684 169 LGLKRGFEIFQQMITDKV-DPN----EATFTSVARLAVAKEDPEMAFDLVKQMKSF----GIPPK-LRSYGPALFGFCKL 238 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~-~p~----~~ty~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~ty~~li~~~~~~ 238 (593)
|++++|.+.+++..+... .++ ..++..+...+...|++++|.+.+++..+. +-.+. ..++..+...+...
T Consensus 23 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~ 102 (164)
T 3ro3_A 23 GNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL 102 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 599999999998765311 112 147888999999999999999999997642 11111 45678888999999
Q ss_pred CChhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 239 GNTDKAYEVDAHMGES----GVVPE-EPELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 239 g~~~~A~~l~~~m~~~----g~~p~-~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
|++++|.+.+++..+. +..+. ...+..+...+...|+.++|.+.+++..+
T Consensus 103 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 103 QDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999999999987642 22111 34577888889999999999999988765
No 168
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.03 E-value=0.014 Score=51.30 Aligned_cols=94 Identities=12% Similarity=0.001 Sum_probs=49.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCC
Q 007684 107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV 186 (593)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~ 186 (593)
+..+...+.+.|++++|+..|++..+.. +-+...|..+-.+|... |++++|++.|++..+..
T Consensus 14 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~----------------g~~~~A~~~~~~al~~~- 75 (164)
T 3sz7_A 14 LKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSAS----------------GQHEKAAEDAELATVVD- 75 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHc----------------cCHHHHHHHHHHHHHhC-
Confidence 5555566666666666666666655442 11333333333344443 35556666655555443
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007684 187 DPNEATFTSVARLAVAKEDPEMAFDLVKQMKS 218 (593)
Q Consensus 187 ~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 218 (593)
+-+...|..+..+|...|++++|.+.|++..+
T Consensus 76 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 76 PKYSKAWSRLGLARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33445555555555555555555555555544
No 169
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.03 E-value=0.0063 Score=64.29 Aligned_cols=117 Identities=12% Similarity=-0.039 Sum_probs=90.8
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCH
Q 007684 112 DMCSKRGDVFEALRLYDDARSNGITL-SQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNE 190 (593)
Q Consensus 112 ~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~ 190 (593)
..+.+.|++++|++.|++..+. .| +...|..+-.+|.+. |++++|.+.|++..+.. +-+.
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~----------------g~~~~A~~~~~~al~l~-p~~~ 74 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRT----------------ECYGYALGDATRAIELD-KKYI 74 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHSC-TTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHh----------------cCHHHHHHHHHHHHHhC-CCCH
Confidence 3456789999999999998876 34 466777666677775 59999999999999876 5577
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHH--HHhcCChhHHHHHHH
Q 007684 191 ATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFG--FCKLGNTDKAYEVDA 249 (593)
Q Consensus 191 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~--~~~~g~~~~A~~l~~ 249 (593)
.++..+..+|...|++++|.+.+++..+. .|+ ...+..+..+ +.+.|++++|.+.++
T Consensus 75 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 75 KGYYRRAASNMALGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 89999999999999999999999999874 344 3455556555 888899999999998
No 170
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.99 E-value=0.001 Score=70.44 Aligned_cols=137 Identities=9% Similarity=-0.067 Sum_probs=88.9
Q ss_pred HHhcCCCcccCCCCcccccchHHhhhhcCCCCHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007684 72 AFSKKSTVNESSAPNTGTMSNKSKKKARRESPEG--VLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVC 149 (593)
Q Consensus 72 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~ 149 (593)
.+...|++++|+.++.+.+ ....+.-+...|.. +++.|...|...|++++|+.++++..+
T Consensus 318 ~~~~qg~~~eA~~l~~~aL-~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~----------------- 379 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECL-EKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVD----------------- 379 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHH-HHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------
T ss_pred HHHhCCCHHHHHHHHHHHH-HHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-----------------
Confidence 3668899999999987777 33333333333333 288888888888888888888765432
Q ss_pred HccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCC-CC
Q 007684 150 SCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS-----FGI-PP 223 (593)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~-----~g~-~p 223 (593)
+++.......+-...+++.|...|...|++++|..++++..+ .|- .|
T Consensus 380 ---------------------------i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp 432 (490)
T 3n71_A 380 ---------------------------GYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP 432 (490)
T ss_dssp ---------------------------HHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred ---------------------------HHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 222222222222334678888888888888888888777642 221 12
Q ss_pred C-cccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007684 224 K-LRSYGPALFGFCKLGNTDKAYEVDAHMGE 253 (593)
Q Consensus 224 ~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 253 (593)
+ ..+.+.+-.++...+..++|+.+|..+.+
T Consensus 433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 433 ITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 23456666777777888888888888764
No 171
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=96.99 E-value=0.011 Score=49.19 Aligned_cols=92 Identities=15% Similarity=-0.040 Sum_probs=70.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc----ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----HHHHHH
Q 007684 194 TSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL----RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE----EPELSA 265 (593)
Q Consensus 194 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ 265 (593)
..+...+...|++++|.+.|++..+.. |+. ..+..+..+|.+.|++++|.+.|++..... |+ ...+..
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~ 81 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHH
Confidence 345667778899999999999887633 443 366677888888999999999998887643 33 455777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 007684 266 LLKLSVDAKKVDKVYEILHRLRTL 289 (593)
Q Consensus 266 Ll~~~~~~g~~~~a~~~l~~m~~~ 289 (593)
+..++...|+.++|...|+++.+.
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888888899999999999888763
No 172
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.96 E-value=0.00097 Score=55.29 Aligned_cols=84 Identities=7% Similarity=-0.054 Sum_probs=59.6
Q ss_pred cccHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHH
Q 007684 168 NLGLKRGFEIFQQMITDKV--DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKA 244 (593)
Q Consensus 168 ~g~~~~a~~l~~~M~~~g~--~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A 244 (593)
.|++++|++.|++..+.+. +-+..++..+...|...|++++|...+++..+.. |+ ...+..+..+|.+.|+.++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHcCCHHHH
Confidence 3677888888888877541 2344577778888888888888888888887643 44 56677778888888888888
Q ss_pred HHHHHHHHh
Q 007684 245 YEVDAHMGE 253 (593)
Q Consensus 245 ~~l~~~m~~ 253 (593)
.+.+++...
T Consensus 81 ~~~~~~al~ 89 (117)
T 3k9i_A 81 VELLLKIIA 89 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887764
No 173
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=96.89 E-value=0.0046 Score=59.95 Aligned_cols=134 Identities=10% Similarity=-0.095 Sum_probs=90.6
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHH
Q 007684 103 PEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMI 182 (593)
Q Consensus 103 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~ 182 (593)
+....-.....+...|++++|.++|+.+...+ |+......+-..|.+. +++++|+..|+...
T Consensus 101 r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~----------------~r~~dA~~~l~~a~ 162 (282)
T 4f3v_A 101 PLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAA----------------ERWTDVIDQVKSAG 162 (282)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHT----------------TCHHHHHHHHTTGG
T ss_pred HhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHc----------------CCHHHHHHHHHHhh
Confidence 45556677888889999999999999877653 4443222222344444 48999999997544
Q ss_pred hCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--cccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 007684 183 TDKVDPN--EATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK--LRSYGPALFGFCKLGNTDKAYEVDAHMGESG 255 (593)
Q Consensus 183 ~~g~~p~--~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g 255 (593)
... .|. ...+..+-.++...|++++|++.|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 163 ~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 163 KWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp GCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred ccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 321 111 23677778888888999999998888875433254 2234446677778888888888888887543
No 174
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=96.88 E-value=0.0055 Score=59.43 Aligned_cols=130 Identities=11% Similarity=-0.077 Sum_probs=97.4
Q ss_pred ccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--cccHHHHHHHHHhcCChhHH
Q 007684 167 SNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK--LRSYGPALFGFCKLGNTDKA 244 (593)
Q Consensus 167 ~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~ty~~li~~~~~~g~~~~A 244 (593)
..|++++|.++|+.+...+ |+....-.+...+.+.+++++|+..|+...... .|. ...+-.+-.++.+.|++++|
T Consensus 114 ~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eA 190 (282)
T 4f3v_A 114 AQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEA 190 (282)
T ss_dssp HHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHH
Confidence 4689999999999988755 555466666678999999999999998554421 121 23566688999999999999
Q ss_pred HHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHH
Q 007684 245 YEVDAHMGESGVVPE--EPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKII 301 (593)
Q Consensus 245 ~~l~~~m~~~g~~p~--~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l 301 (593)
++.|++.......|. .........++.+.|+.++|..+|+++... .|+......|
T Consensus 191 l~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~aL 247 (282)
T 4f3v_A 191 ERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAAAL 247 (282)
T ss_dssp HHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHH
Confidence 999999985444364 234666777888999999999999999884 3443333333
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.86 E-value=0.0031 Score=52.76 Aligned_cols=90 Identities=8% Similarity=-0.080 Sum_probs=47.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 007684 196 VARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAK 274 (593)
Q Consensus 196 li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g 274 (593)
+...+.+.|++++|...+++..+. .|+ ...|..+-.++.+.|+.++|...|++..+..- -+...+..+..++...|
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcC
Confidence 344455555666666655555542 232 34455555555555666666665555554321 12334555555555566
Q ss_pred CHHHHHHHHHHHHH
Q 007684 275 KVDKVYEILHRLRT 288 (593)
Q Consensus 275 ~~~~a~~~l~~m~~ 288 (593)
+.++|...+++..+
T Consensus 100 ~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 100 NANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666555543
No 176
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.80 E-value=0.0093 Score=49.73 Aligned_cols=86 Identities=12% Similarity=0.064 Sum_probs=75.0
Q ss_pred ccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhH
Q 007684 165 NDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDK 243 (593)
Q Consensus 165 ~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~ 243 (593)
+.+.|++++|...|++..+.. +-+...+..+..++...|++++|...+++..+. .|+ ...+..+..+|.+.|+.++
T Consensus 27 ~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~~~g~~~~ 103 (121)
T 1hxi_A 27 MLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEHNANA 103 (121)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHH
Confidence 345799999999999998876 557888999999999999999999999999874 354 5678889999999999999
Q ss_pred HHHHHHHHHh
Q 007684 244 AYEVDAHMGE 253 (593)
Q Consensus 244 A~~l~~~m~~ 253 (593)
|.+.+++..+
T Consensus 104 A~~~~~~al~ 113 (121)
T 1hxi_A 104 ALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 9999999875
No 177
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=96.77 E-value=0.44 Score=46.69 Aligned_cols=233 Identities=9% Similarity=0.032 Sum_probs=148.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCCCCCCCCCCcccccc--cHHHHHHHHHHHHhC
Q 007684 108 RHKLDMCSKRGDVFEALRLYDDARSNGITLS-QHHYNVLLYVCSCKCGSESSENGDRENDSNL--GLKRGFEIFQQMITD 184 (593)
Q Consensus 108 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g--~~~~a~~l~~~M~~~ 184 (593)
..+.....+...-++|+.+++.+... .|+ ...||.-=.+.... | +++++++.++.+...
T Consensus 37 ~~~~a~~~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l----------------~~~~~~eeL~~~~~~L~~ 98 (306)
T 3dra_A 37 GLLLALMKAEEYSERALHITELGINE--LASHYTIWIYRFNILKNL----------------PNRNLYDELDWCEEIALD 98 (306)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC----------------TTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHc----------------ccccHHHHHHHHHHHHHH
Confidence 33333344445557999999999877 343 34444433333332 3 899999999999987
Q ss_pred CCCCCHHHHHHHHHHH----Hhc---CChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChh--HHHHHHHHHHhCC
Q 007684 185 KVDPNEATFTSVARLA----VAK---EDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTD--KAYEVDAHMGESG 255 (593)
Q Consensus 185 g~~p~~~ty~~li~~~----~~~---g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~--~A~~l~~~m~~~g 255 (593)
. +-+..+++.--..+ ... +++++++++++++.+..- -+-.+|+.-.-.+.+.|..+ ++++.++++.+..
T Consensus 99 n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d 176 (306)
T 3dra_A 99 N-EKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD 176 (306)
T ss_dssp C-TTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred C-cccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC
Confidence 6 44556666655555 555 789999999999987431 23566777777777888888 9999999999866
Q ss_pred CCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhhhccccch-hhhHHHhhh
Q 007684 256 VVPEEPELSALLKLSVDAKK------VDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWD-VSKVREGIV 328 (593)
Q Consensus 256 ~~p~~~t~~~Ll~~~~~~g~------~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~d-~~~~~~~~~ 328 (593)
. -|...|+.-.-++...|. ++++++.++++..... -+.+.+.-+-..+...+. ..+ ...+...
T Consensus 177 ~-~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~------~~~~~~~~~~~-- 246 (306)
T 3dra_A 177 L-KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDR------SITQLEEFSLQ-- 246 (306)
T ss_dssp T-TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTC------CGGGGHHHHHT--
T ss_pred C-CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCC------ChHHHHHHHHH--
Confidence 5 367778777666666666 8888888888876322 244444444333322221 001 0001000
Q ss_pred cCCCcccccccccCCceEEEEecccCCCCcCcccccccccCCCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhc
Q 007684 329 RGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRH 405 (593)
Q Consensus 329 ~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~ 405 (593)
....-...+.....+.-+...|...|+.++|.+.|+...++-
T Consensus 247 -----------------------------------~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~ 288 (306)
T 3dra_A 247 -----------------------------------FVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKY 288 (306)
T ss_dssp -----------------------------------TEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred -----------------------------------HHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcc
Confidence 000000112344566667777888999999999999987643
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=96.69 E-value=0.028 Score=46.57 Aligned_cols=49 Identities=6% Similarity=0.088 Sum_probs=24.1
Q ss_pred ccHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007684 169 LGLKRGFEIFQQMITDKVDPN---EATFTSVARLAVAKEDPEMAFDLVKQMKS 218 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~~p~---~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 218 (593)
|++++|.+.|++..... +.+ ..++..+..++...|++++|...|+++.+
T Consensus 53 ~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 53 RNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp TCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35555555555554432 111 33444455555555555555555555544
No 179
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.69 E-value=0.0022 Score=53.07 Aligned_cols=87 Identities=13% Similarity=0.049 Sum_probs=65.0
Q ss_pred cCCCHHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHH
Q 007684 116 KRGDVFEALRLYDDARSNGIT-LS-QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATF 193 (593)
Q Consensus 116 ~~g~~~~A~~l~~~m~~~g~~-p~-~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty 193 (593)
..|++++|+..|++..+.+.. |+ ...+..+-.+|... |++++|.+.|++..+.. +-+..++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~----------------~~~~~A~~~~~~al~~~-p~~~~~~ 64 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTL----------------GEYRKAEAVLANGVKQF-PNHQALR 64 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHhC-CCchHHH
Confidence 458889999999999886421 22 34444444566665 69999999999998876 5567889
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC
Q 007684 194 TSVARLAVAKEDPEMAFDLVKQMKSF 219 (593)
Q Consensus 194 ~~li~~~~~~g~~~~A~~l~~~m~~~ 219 (593)
..+..++...|++++|...+++....
T Consensus 65 ~~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 65 VFYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999998763
No 180
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.67 E-value=0.031 Score=57.47 Aligned_cols=161 Identities=8% Similarity=-0.121 Sum_probs=114.5
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHH
Q 007684 112 DMCSKRGDVFEALRLYDDARSNGITLS----------------QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175 (593)
Q Consensus 112 ~~~~~~g~~~~A~~l~~~m~~~g~~p~----------------~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~ 175 (593)
..+.+.|++++|++.|..+.+..-..+ ...+..|..+|... |++++|.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~----------------~~~~~a~ 75 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTM----------------GAKDKLR 75 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHH----------------TCHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHC----------------CCHHHHH
Confidence 456788999999999999987632111 12355566677776 6999999
Q ss_pred HHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCCC-cccHHHHHHHHHhcCChhHHH
Q 007684 176 EIFQQMITD-KVDPNE----ATFTSVARLAVAKEDPEMAFDLVKQMKS----FGIPPK-LRSYGPALFGFCKLGNTDKAY 245 (593)
Q Consensus 176 ~l~~~M~~~-g~~p~~----~ty~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~ty~~li~~~~~~g~~~~A~ 245 (593)
+.+.++... +..++. .+.+.+-..+...|+.++|.+++++... .+..+. ..++..+...|...|++++|.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 155 (434)
T 4b4t_Q 76 EFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSL 155 (434)
T ss_dssp HHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHH
Confidence 999987652 111222 1233333344457899999999988753 232232 467888999999999999999
Q ss_pred HHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 246 EVDAHMGES----GVVPE-EPELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 246 ~l~~~m~~~----g~~p~-~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
.++++.... +-.+. ...+..++..|...|++++|..++++...
T Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 156 ALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp HHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 999987632 22233 34588899999999999999999998765
No 181
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.60 E-value=0.052 Score=46.33 Aligned_cols=113 Identities=7% Similarity=-0.019 Sum_probs=94.2
Q ss_pred cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh----cCChhH
Q 007684 168 NLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK----LGNTDK 243 (593)
Q Consensus 168 ~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~ 243 (593)
..+.++|++.|++..+.| .|+.. |-..|...+.+++|++.|++..+.| +...+..+-..|.. .++.++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 358999999999999988 44444 7777777888999999999998875 45677778888888 889999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHccC
Q 007684 244 AYEVDAHMGESGVVPEEPELSALLKLSVD----AKKVDKVYEILHRLRTLVR 291 (593)
Q Consensus 244 A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~----~g~~~~a~~~l~~m~~~~~ 291 (593)
|.++|++..+.| +...+..|-..|.. .++.++|.+.|++..+.|.
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999998876 56778888888888 7899999999999988653
No 182
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.57 E-value=0.11 Score=57.06 Aligned_cols=167 Identities=7% Similarity=-0.020 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHH
Q 007684 104 EGVLRHKLDMCSKRGDVFEAL-RLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMI 182 (593)
Q Consensus 104 ~~~~~~li~~~~~~g~~~~A~-~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~ 182 (593)
...|-.....+-+.|+.++|. ++|++.... ++.+...|-..+...... |++++|.++|+.+.
T Consensus 343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~----------------~~~e~aR~iyek~l 405 (679)
T 4e6h_A 343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELN----------------TKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHh----------------CCHHHHHHHHHHHH
Confidence 334444444555678888896 999988764 233444454555555554 58999999999987
Q ss_pred hCCC---------CCC------------HHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCcccHHHHHHHHHhc-C
Q 007684 183 TDKV---------DPN------------EATFTSVARLAVAKEDPEMAFDLVKQMKSF-GIPPKLRSYGPALFGFCKL-G 239 (593)
Q Consensus 183 ~~g~---------~p~------------~~ty~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~ty~~li~~~~~~-g 239 (593)
.... .|+ ...|...++...+.|..+.|..+|++..+. +. +....|-..+..--+. +
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCC
Confidence 6420 142 236777888888899999999999999875 21 1223333222222233 4
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007684 240 NTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289 (593)
Q Consensus 240 ~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~ 289 (593)
+.+.|.++|+...+. +.-+..-+...++.....|+.++|..+|++....
T Consensus 485 d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 485 DTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp CCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 699999999998864 3334555678888888899999999999998764
No 183
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.42 E-value=0.012 Score=48.18 Aligned_cols=78 Identities=12% Similarity=0.008 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHH
Q 007684 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHM 251 (593)
Q Consensus 173 ~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m 251 (593)
+|++.|++..+.. +.+...+..+...+...|++++|...+++..+.. |+ ...|..+..+|.+.|+.++|...|++.
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5677777777655 4567788888889999999999999999887743 44 567777888888899999999888887
Q ss_pred Hh
Q 007684 252 GE 253 (593)
Q Consensus 252 ~~ 253 (593)
.+
T Consensus 80 l~ 81 (115)
T 2kat_A 80 LA 81 (115)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 184
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.40 E-value=0.032 Score=48.71 Aligned_cols=97 Identities=18% Similarity=0.135 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhC-------CC---------CCC-cccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007684 191 ATFTSVARLAVAKEDPEMAFDLVKQMKSF-------GI---------PPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGE 253 (593)
Q Consensus 191 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~-------g~---------~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 253 (593)
..+......+.+.|++++|...|.+.... .- .|. ...|..+..+|.+.|++++|...+++..+
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 45667778888899999999999887653 00 122 35788888999999999999999998886
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 254 SGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 254 ~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
.. +.+...|..+..+|...|++++|...|++..+
T Consensus 92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 53 23466788899999999999999999998876
No 185
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.35 E-value=0.1 Score=44.45 Aligned_cols=112 Identities=12% Similarity=0.049 Sum_probs=90.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007684 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVA 197 (593)
Q Consensus 118 g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li 197 (593)
+++++|+++|++..+.| .|+.. |=..|... +..++|++.|++..+.| +..++..|.
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g----------------~~~~~A~~~~~~Aa~~g---~~~a~~~Lg 64 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQ----------------INKQKLFQYLSKACELN---SGNGCRFLG 64 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTT----------------SCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcC----------------CCHHHHHHHHHHHHcCC---CHHHHHHHH
Confidence 46899999999999988 33333 33355554 36788999999998876 678888999
Q ss_pred HHHHh----cCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHHhCCC
Q 007684 198 RLAVA----KEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK----LGNTDKAYEVDAHMGESGV 256 (593)
Q Consensus 198 ~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g~ 256 (593)
..|.. .++.++|++.|++..+.|. ...+..|-..|.. .++.++|.+.|++..+.|.
T Consensus 65 ~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 65 DFYENGKYVKKDLRKAAQYYSKACGLND---QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHCSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCCCCccHHHHHHHHHHHHcCCC---HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99988 8999999999999988753 4567778888888 8999999999999888764
No 186
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.30 E-value=0.036 Score=48.60 Aligned_cols=96 Identities=7% Similarity=-0.096 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--------c-----ccHHHHHHHHHhcCChhHHHHHHHHHHhC---
Q 007684 191 ATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK--------L-----RSYGPALFGFCKLGNTDKAYEVDAHMGES--- 254 (593)
Q Consensus 191 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--------~-----~ty~~li~~~~~~g~~~~A~~l~~~m~~~--- 254 (593)
..+......+.+.|++++|...|++..+. .|+ . ..|+.+-.++.+.|++++|...+++..+.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 34556677788899999999999998763 243 1 28889999999999999999999998863
Q ss_pred --CCCCCHH-HH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 255 --GVVPEEP-EL----SALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 255 --g~~p~~~-t~----~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
.+.|+.. .| ...-.++...|++++|+..|++..+
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 2257654 47 8888999999999999999999876
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.28 E-value=0.011 Score=59.21 Aligned_cols=145 Identities=11% Similarity=-0.000 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC
Q 007684 105 GVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD 184 (593)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~ 184 (593)
..+..+-..+.+.|++++|+..|++..+. .|+... +... |+.+++...+.
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~----------------~~~~~~~~~l~----- 229 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLY----------------GKYQDMALAVK----- 229 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCC----------------HHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhc----------------ccHHHHHHHHH-----
Confidence 34778888899999999999999998765 333321 1121 35555543331
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH-
Q 007684 185 KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPP-KLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPE- 262 (593)
Q Consensus 185 g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t- 262 (593)
...|..+..+|.+.|++++|...+++..+.. | +...|..+..+|...|++++|.+.|++..+ +.|+...
T Consensus 230 -----~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a 300 (338)
T 2if4_A 230 -----NPCHLNIAACLIKLKRYDEAIGHCNIVLTEE--EKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAI 300 (338)
T ss_dssp -----THHHHHHHHHHHTTTCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------
T ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHH
Confidence 1378888889999999999999999887743 5 356788888999999999999999998764 3354433
Q ss_pred HHHHHHH-HHhcCCHHHHHHHHHHHHH
Q 007684 263 LSALLKL-SVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 263 ~~~Ll~~-~~~~g~~~~a~~~l~~m~~ 288 (593)
+..|... ....+..+++..+|.+|..
T Consensus 301 ~~~L~~l~~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 301 RRELRALAEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4444444 2345567778888888865
No 188
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=96.20 E-value=0.08 Score=52.92 Aligned_cols=218 Identities=10% Similarity=0.060 Sum_probs=137.2
Q ss_pred cccch--HHHHHHHhcCC-CcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcC-C-CHHHHHHHHHHHHHCCCC
Q 007684 62 ADLTT--GLCTLAFSKKS-TVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKR-G-DVFEALRLYDDARSNGIT 136 (593)
Q Consensus 62 ~~~~~--~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~~A~~l~~~m~~~g~~ 136 (593)
|+..+ +.=-..+...| .++++...+..++ ...+....+|+.---.+.+. + ++++++++++.+.+...
T Consensus 85 P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L-------~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dp- 156 (349)
T 3q7a_A 85 PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFA-------VQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDP- 156 (349)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH-------HTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCT-
T ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-------HhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCC-
Confidence 44444 33333344445 4777777776666 44555666666655555554 5 78899999988887643
Q ss_pred CCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-------hHHH
Q 007684 137 LSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKED-------PEMA 209 (593)
Q Consensus 137 p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~-------~~~A 209 (593)
-|...|+----+..+.+..+. .....+.++++.++++.+.. +-|..+|+.....+.+.++ ++++
T Consensus 157 kNy~AW~~R~wvl~~l~~~~~--------~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eE 227 (349)
T 3q7a_A 157 KNYHTWAYLHWLYSHFSTLGR--------ISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDE 227 (349)
T ss_dssp TCHHHHHHHHHHHHHHHHTTC--------CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccccc--------cchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHH
Confidence 266666654433333210000 00113458999999999877 6688899999888888876 6889
Q ss_pred HHHHHHHHhCCCCCC-cccHHHHHHHHHhcCCh--------------------hHHHHHHHHHHhCC-----CCCCHHHH
Q 007684 210 FDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNT--------------------DKAYEVDAHMGESG-----VVPEEPEL 263 (593)
Q Consensus 210 ~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~--------------------~~A~~l~~~m~~~g-----~~p~~~t~ 263 (593)
++.+++..... |+ ...|+-+-..+.+.|.. .+..++..++...+ -.+....+
T Consensus 228 Le~~~~aI~~~--P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al 305 (349)
T 3q7a_A 228 LIYILKSIHLI--PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLAL 305 (349)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHH
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHH
Confidence 99999888743 54 56677666666666653 23344444443322 13677788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHH
Q 007684 264 SALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTF 298 (593)
Q Consensus 264 ~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~ 298 (593)
.-|.+.|...|+.++|.++++.+.+..-......+
T Consensus 306 ~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw 340 (349)
T 3q7a_A 306 EYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYW 340 (349)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHH
Confidence 99999999999999999999999764433333333
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.16 E-value=0.038 Score=56.09 Aligned_cols=136 Identities=14% Similarity=0.070 Sum_probs=82.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCC
Q 007684 106 VLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDK 185 (593)
Q Consensus 106 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g 185 (593)
.+..+-..+.+.|++++|+..|++..+. .+.. . ... ..+++.++ .
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~------~---~~~-----------------~~~~~~~~----~--- 269 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS------R---AAA-----------------EDADGAKL----Q--- 269 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHH------H---HHS-----------------CHHHHGGG----H---
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcC------c---ccc-----------------ChHHHHHH----H---
Confidence 3777888899999999999999987753 0000 0 000 11111110 0
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHHH
Q 007684 186 VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP-EEPEL 263 (593)
Q Consensus 186 ~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~ 263 (593)
+-+..+|..+..+|.+.|++++|.+.+++..+. .|+ ...|..+..+|.+.|+.++|.+.|++..+.. | +...+
T Consensus 270 -~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--P~~~~~~ 344 (370)
T 1ihg_A 270 -PVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQ 344 (370)
T ss_dssp -HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred -HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHH
Confidence 123456667777777777777777777777663 243 4566667777777777777777777766432 3 34445
Q ss_pred HHHHHHHHhcCCHHHHHH
Q 007684 264 SALLKLSVDAKKVDKVYE 281 (593)
Q Consensus 264 ~~Ll~~~~~~g~~~~a~~ 281 (593)
..+..++...++.+++.+
T Consensus 345 ~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 345 AELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 556666666666655543
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.16 E-value=0.054 Score=47.24 Aligned_cols=112 Identities=14% Similarity=-0.014 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-ccCCCCCCCCCCCcccccccHHHHHHHHHHHHh
Q 007684 105 GVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCS-CKCGSESSENGDRENDSNLGLKRGFEIFQQMIT 183 (593)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~-~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~ 183 (593)
..+...-..+.+.|++++|+..|.+..+. +.... ... ..+.+ ...+.
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~------------~~~~~~~~~--------------~~~~~-----~~~~~- 59 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTR------------LDTLILREK--------------PGEPE-----WVELD- 59 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHTSC--------------TTSHH-----HHHHH-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------HHHhcccCC--------------CCHHH-----HHHHH-
Confidence 34888889999999999999999987753 00000 000 00000 01111
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007684 184 DKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGE 253 (593)
Q Consensus 184 ~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 253 (593)
+.+...|..+..+|.+.|++++|...+++..+.. |+ ...|..+..+|...|++++|...|++..+
T Consensus 60 ---~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 60 ---RKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE--ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp ---HTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 2233456666666666666666666666665532 33 45566666666666666666666666654
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.07 E-value=0.045 Score=55.53 Aligned_cols=85 Identities=11% Similarity=-0.055 Sum_probs=65.9
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCC-CHHHHHHHHH
Q 007684 225 LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV-SESTFKIIED 303 (593)
Q Consensus 225 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~-~~~t~~~l~~ 303 (593)
...|..+..+|.+.|++++|.+.+++..+..- -+...|..+..+|...|++++|.+.|++..+. .| +......+..
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~ 349 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 46888899999999999999999999986431 25667888999999999999999999998773 34 4445555555
Q ss_pred HHhcchhhh
Q 007684 304 WFDSVDAAE 312 (593)
Q Consensus 304 ~~~~~~~~~ 312 (593)
.+...+...
T Consensus 350 ~~~~~~~~~ 358 (370)
T 1ihg_A 350 VKQKIKAQK 358 (370)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555444433
No 192
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.00 E-value=0.065 Score=56.08 Aligned_cols=83 Identities=11% Similarity=0.005 Sum_probs=63.4
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCC-HHHHHHHHH
Q 007684 225 LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVS-ESTFKIIED 303 (593)
Q Consensus 225 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~-~~t~~~l~~ 303 (593)
...|..+..+|.+.|++++|...+++..+..- -+...|..+..+|...|++++|...|++..+. .|+ ...+..+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~ 393 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISM 393 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 36788899999999999999999999987542 35677999999999999999999999999773 343 334455555
Q ss_pred HHhcchh
Q 007684 304 WFDSVDA 310 (593)
Q Consensus 304 ~~~~~~~ 310 (593)
.+...+.
T Consensus 394 ~~~~~~~ 400 (457)
T 1kt0_A 394 CQKKAKE 400 (457)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544443
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=95.89 E-value=0.026 Score=45.26 Aligned_cols=64 Identities=13% Similarity=0.032 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CcccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 007684 189 NEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPP-KLRSYGPALFGFCKLGNTDKAYEVDAHMGES 254 (593)
Q Consensus 189 ~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 254 (593)
+...+..+...+...|++++|.+.+++..+.. | +...|..+..+|.+.|++++|.+.+++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 45567778888888888888888888887642 4 3567777888888888888888888888753
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=95.80 E-value=0.089 Score=46.06 Aligned_cols=100 Identities=10% Similarity=0.085 Sum_probs=77.9
Q ss_pred ccHHHHHHHHHHHHhCCCC-C-----CHH-----HHHHHHHHHHhcCChHHHHHHHHHHHhC-----CCCCC-cccH---
Q 007684 169 LGLKRGFEIFQQMITDKVD-P-----NEA-----TFTSVARLAVAKEDPEMAFDLVKQMKSF-----GIPPK-LRSY--- 228 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~~-p-----~~~-----ty~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~p~-~~ty--- 228 (593)
|++++|++.|++..+.... | +.. .|+.+..++.+.|++++|+..+++..+. .+.|+ ...|
T Consensus 25 g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~ 104 (159)
T 2hr2_A 25 GEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISA 104 (159)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHH
Confidence 6999999999998764321 0 333 8999999999999999999999999873 22576 4577
Q ss_pred -HHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCCHHHHHHHHH
Q 007684 229 -GPALFGFCKLGNTDKAYEVDAHMGE-----SGVVPEEPELSALLK 268 (593)
Q Consensus 229 -~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~Ll~ 268 (593)
...-.++...|++++|.+.|++..+ .|+.+........+.
T Consensus 105 ~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~ 150 (159)
T 2hr2_A 105 VYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAI 150 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHH
T ss_pred HHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 8889999999999999999999863 466666555444443
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=95.70 E-value=0.02 Score=57.29 Aligned_cols=100 Identities=11% Similarity=-0.050 Sum_probs=75.2
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 007684 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVD 248 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 248 (593)
|++++|...|++..... |+... +...++.+++...+ . ...|..+..+|.+.|++++|...+
T Consensus 193 g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l---~-------~~~~~nla~~~~~~g~~~~A~~~~ 253 (338)
T 2if4_A 193 EKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAV---K-------NPCHLNIAACLIKLKRYDEAIGHC 253 (338)
T ss_dssp SCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHH---H-------THHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHH---H-------HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 69999999999877543 44332 22334444443322 1 247888999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 249 AHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 249 ~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
++..+.. .-+...|..+..+|...|++++|...|++..+
T Consensus 254 ~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 254 NIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9988643 23567799999999999999999999999865
No 196
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=95.68 E-value=0.022 Score=49.87 Aligned_cols=98 Identities=12% Similarity=0.018 Sum_probs=69.1
Q ss_pred cccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh----------HHHHHHHHHHHhCCCCCC-cccHHHHH
Q 007684 164 ENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDP----------EMAFDLVKQMKSFGIPPK-LRSYGPAL 232 (593)
Q Consensus 164 ~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~----------~~A~~l~~~m~~~g~~p~-~~ty~~li 232 (593)
...+.+.+++|.+.++...+.. +-+...|+.+-.++...+++ ++|...|++..+ +.|+ ...|..+-
T Consensus 11 ~~~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG 87 (158)
T 1zu2_A 11 EFDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIG 87 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHH
Confidence 3345578999999999988877 66888899888888887765 488888888777 3465 46777788
Q ss_pred HHHHhcC-----------ChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 007684 233 FGFCKLG-----------NTDKAYEVDAHMGESGVVPEEPELSAL 266 (593)
Q Consensus 233 ~~~~~~g-----------~~~~A~~l~~~m~~~g~~p~~~t~~~L 266 (593)
.+|...| ++++|.+.|++..+. .|+...|...
T Consensus 88 ~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~a 130 (158)
T 1zu2_A 88 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKS 130 (158)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 8887764 566666666666542 3554444333
No 197
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=95.67 E-value=2 Score=42.81 Aligned_cols=177 Identities=7% Similarity=0.009 Sum_probs=120.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccc-cHHHHHHHHHHHHhCC
Q 007684 107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNL-GLKRGFEIFQQMITDK 185 (593)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g-~~~~a~~l~~~M~~~g 185 (593)
++.+-....+.+..++|+++++++....-. +...|+.-=.+.... | .+++++++++.+....
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l----------------~~~l~eEL~~~~~~L~~n 119 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSL----------------NKSLEDELRLMNEFAVQN 119 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT----------------TCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHh----------------hhhHHHHHHHHHHHHHhC
Confidence 444444455566678899999999987322 344555443333332 3 5999999999999877
Q ss_pred CCCCHHHHHHHHHHHHhc-C-ChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChh--------HHHHHHHHHHhCC
Q 007684 186 VDPNEATFTSVARLAVAK-E-DPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTD--------KAYEVDAHMGESG 255 (593)
Q Consensus 186 ~~p~~~ty~~li~~~~~~-g-~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~--------~A~~l~~~m~~~g 255 (593)
+-+..+|+.--..+.+. + ++++++++++++.+..- -+-..|+.-.-.+.+.|..+ ++++.++++.+..
T Consensus 120 -PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d 197 (349)
T 3q7a_A 120 -LKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD 197 (349)
T ss_dssp -CCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC
T ss_pred -CCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC
Confidence 56778888887777776 7 89999999999987432 23455555555555555555 8999999998766
Q ss_pred CCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHccCCC-CHHHHHHHHHHH
Q 007684 256 VVPEEPELSALLKLSVDAKK-------VDKVYEILHRLRTLVRQV-SESTFKIIEDWF 305 (593)
Q Consensus 256 ~~p~~~t~~~Ll~~~~~~g~-------~~~a~~~l~~m~~~~~~~-~~~t~~~l~~~~ 305 (593)
. -|...|+....++.+.+. ++++++.++++.. ..| +.+.+.-+...+
T Consensus 198 p-~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll 252 (349)
T 3q7a_A 198 G-RNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIH--LIPHNVSAWNYLRGFL 252 (349)
T ss_dssp T-TCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred C-CCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 4 377778888877777765 6788888888766 234 344444444333
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=95.49 E-value=0.11 Score=39.69 Aligned_cols=81 Identities=11% Similarity=0.048 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007684 190 EATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKL 269 (593)
Q Consensus 190 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~ 269 (593)
...+..+...+...|++++|...+++..+..- .+...+..+...|.+.|++++|.+.+++..+..- -+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 45677777788888888888888888876431 2345677777888888888888888888765431 234445555554
Q ss_pred HHh
Q 007684 270 SVD 272 (593)
Q Consensus 270 ~~~ 272 (593)
+..
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 199
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.45 E-value=0.033 Score=57.75 Aligned_cols=84 Identities=8% Similarity=-0.041 Sum_probs=57.2
Q ss_pred ChHHHHHHHHHHHh---CCCCC---C-cccHHHHHHHHHhcCChhHHHHHHHHHHh-----CC-CCCCHH-HHHHHHHHH
Q 007684 205 DPEMAFDLVKQMKS---FGIPP---K-LRSYGPALFGFCKLGNTDKAYEVDAHMGE-----SG-VVPEEP-ELSALLKLS 270 (593)
Q Consensus 205 ~~~~A~~l~~~m~~---~g~~p---~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~-----~g-~~p~~~-t~~~Ll~~~ 270 (593)
++++|..++++..+ .-+.| + ..+++.|..+|...|++++|+.++++..+ .| -.|+.. +|+.|...|
T Consensus 313 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~ 392 (433)
T 3qww_A 313 SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLY 392 (433)
T ss_dssp CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence 46667777666542 22223 3 36788888888888888888888887763 22 224443 388888888
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 007684 271 VDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 271 ~~~g~~~~a~~~l~~m~~ 288 (593)
...|++++|..++++..+
T Consensus 393 ~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 393 MGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHH
Confidence 888888888888887654
No 200
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.43 E-value=0.081 Score=54.80 Aligned_cols=85 Identities=8% Similarity=-0.062 Sum_probs=66.7
Q ss_pred cccHHHHHHHHHHHHh---CCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHh-----CC-CCCC-cccHHHHHH
Q 007684 168 NLGLKRGFEIFQQMIT---DKVDPN----EATFTSVARLAVAKEDPEMAFDLVKQMKS-----FG-IPPK-LRSYGPALF 233 (593)
Q Consensus 168 ~g~~~~a~~l~~~M~~---~g~~p~----~~ty~~li~~~~~~g~~~~A~~l~~~m~~-----~g-~~p~-~~ty~~li~ 233 (593)
.|++++|.+++++..+ .-+.|+ ..++++|..+|...|++++|..++++..+ .| -.|+ ..+|+.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 3678899999988654 222232 35899999999999999999999999853 22 2344 367999999
Q ss_pred HHHhcCChhHHHHHHHHHH
Q 007684 234 GFCKLGNTDKAYEVDAHMG 252 (593)
Q Consensus 234 ~~~~~g~~~~A~~l~~~m~ 252 (593)
.|...|++++|+.++++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 9999999999999999875
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=95.41 E-value=0.051 Score=43.42 Aligned_cols=76 Identities=11% Similarity=0.082 Sum_probs=57.2
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc-------ccHHHHHHHHHhcCCh
Q 007684 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL-------RSYGPALFGFCKLGNT 241 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~ty~~li~~~~~~g~~ 241 (593)
|++++|.+.|++..+.. +.+...+..+..++...|++++|.+.+++..+. .|+. ..+..+..++...|+.
T Consensus 18 ~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (111)
T 2l6j_A 18 GLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSKLQYRLELAQGAVGSV 94 (111)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHHHHHHHHHHHHHHHhH
Confidence 69999999999988765 557889999999999999999999999999873 4653 3344444455555555
Q ss_pred hHHHHH
Q 007684 242 DKAYEV 247 (593)
Q Consensus 242 ~~A~~l 247 (593)
+.|.+.
T Consensus 95 ~~a~~~ 100 (111)
T 2l6j_A 95 QIPVVE 100 (111)
T ss_dssp CCCSSS
T ss_pred hhhHhH
Confidence 444433
No 202
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=95.29 E-value=0.074 Score=42.25 Aligned_cols=64 Identities=19% Similarity=0.174 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007684 188 PNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGE 253 (593)
Q Consensus 188 p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 253 (593)
-+...+..+...|...|++++|...|++..+.. |+ ...|..+..+|.+.|+.++|.+.|++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 356677788888888888888888888887643 44 55777788888888888888888887653
No 203
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.27 E-value=0.18 Score=52.18 Aligned_cols=104 Identities=14% Similarity=0.049 Sum_probs=78.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC---CCCCC----cccHHHHHHHHHhcCChhHHHHHHHHHHh-----CC-CCCCH-
Q 007684 195 SVARLAVAKEDPEMAFDLVKQMKSF---GIPPK----LRSYGPALFGFCKLGNTDKAYEVDAHMGE-----SG-VVPEE- 260 (593)
Q Consensus 195 ~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~----~~ty~~li~~~~~~g~~~~A~~l~~~m~~-----~g-~~p~~- 260 (593)
..+..+.+.|++++|..++++..+. -+.|+ ..+++.+...|...|++++|+.++++..+ .| -.|+.
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 3355567789999999999998742 22233 36899999999999999999999998773 22 23444
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH---ccCCCCHHHH
Q 007684 261 PELSALLKLSVDAKKVDKVYEILHRLRT---LVRQVSESTF 298 (593)
Q Consensus 261 ~t~~~Ll~~~~~~g~~~~a~~~l~~m~~---~~~~~~~~t~ 298 (593)
.+++.|...|...|++++|..++++..+ ....|+....
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 412 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLI 412 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 4499999999999999999999998754 3345554433
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=95.10 E-value=0.11 Score=42.20 Aligned_cols=79 Identities=8% Similarity=-0.151 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007684 207 EMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHR 285 (593)
Q Consensus 207 ~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~ 285 (593)
+.|.+.+++..+.. |+ ...+..+...|...|++++|.+.|++.....- .+...|..+..+|...|+.++|...|++
T Consensus 2 ~~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 2 QAITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CCHHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35677788777633 44 67788899999999999999999999886542 3466788899999999999999999999
Q ss_pred HHH
Q 007684 286 LRT 288 (593)
Q Consensus 286 m~~ 288 (593)
..+
T Consensus 79 al~ 81 (115)
T 2kat_A 79 GLA 81 (115)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 205
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=94.85 E-value=0.66 Score=45.93 Aligned_cols=151 Identities=11% Similarity=0.012 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007684 120 VFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARL 199 (593)
Q Consensus 120 ~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~ 199 (593)
+++++.+++.+....- -+..+|+.---+....+ ...+++++++++.+.+.. +-|..+|+.-.-.
T Consensus 90 l~~EL~~~~~~L~~~P-Kny~aW~hR~wlL~~l~--------------~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~v 153 (331)
T 3dss_A 90 VKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLP--------------EPNWARELELCARFLEAD-ERNFHCWDYRRFV 153 (331)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHCS--------------SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHhccC--------------cccHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 6889999999887642 26677766554444431 014899999999999877 6788899888888
Q ss_pred HHhcCC-hHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc--------------CChhHHHHHHHHHHhCCCCCCHHHHH
Q 007684 200 AVAKED-PEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKL--------------GNTDKAYEVDAHMGESGVVPEEPELS 264 (593)
Q Consensus 200 ~~~~g~-~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~--------------g~~~~A~~l~~~m~~~g~~p~~~t~~ 264 (593)
+...|. ++++++.++++.+... -|...|+.....+.+. +.++++++.+.+...... -|...|+
T Consensus 154 l~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P-~d~SaW~ 231 (331)
T 3dss_A 154 AAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWF 231 (331)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHST-TCHHHHH
T ss_pred HHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCC-CCHHHHH
Confidence 888888 5999999999998553 3456676666665554 457788888888876442 3556677
Q ss_pred HHHHHHHhc-----------CCHHHHHHHHHHHHH
Q 007684 265 ALLKLSVDA-----------KKVDKVYEILHRLRT 288 (593)
Q Consensus 265 ~Ll~~~~~~-----------g~~~~a~~~l~~m~~ 288 (593)
-+-..+.+. +..+++.+.++++.+
T Consensus 232 Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle 266 (331)
T 3dss_A 232 YHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE 266 (331)
T ss_dssp HHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh
Confidence 665555554 356788888888876
No 206
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=94.56 E-value=0.067 Score=55.41 Aligned_cols=85 Identities=9% Similarity=-0.094 Sum_probs=68.0
Q ss_pred cccHHHHHHHHHHHHhCC---CCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHh-----CC-CCCC-cccHHHHHH
Q 007684 168 NLGLKRGFEIFQQMITDK---VDP----NEATFTSVARLAVAKEDPEMAFDLVKQMKS-----FG-IPPK-LRSYGPALF 233 (593)
Q Consensus 168 ~g~~~~a~~l~~~M~~~g---~~p----~~~ty~~li~~~~~~g~~~~A~~l~~~m~~-----~g-~~p~-~~ty~~li~ 233 (593)
.|++++|.+++++..+.. +.| ...++++|..+|...|++++|..++++... .| -.|+ ..+|+.|..
T Consensus 300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~ 379 (429)
T 3qwp_A 300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGK 379 (429)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHH
Confidence 368899999999887531 222 235899999999999999999999998853 22 2344 368999999
Q ss_pred HHHhcCChhHHHHHHHHHH
Q 007684 234 GFCKLGNTDKAYEVDAHMG 252 (593)
Q Consensus 234 ~~~~~g~~~~A~~l~~~m~ 252 (593)
.|...|++++|+.++++..
T Consensus 380 ~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 380 LQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHH
Confidence 9999999999999999876
No 207
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=94.40 E-value=0.43 Score=47.78 Aligned_cols=153 Identities=10% Similarity=0.001 Sum_probs=100.7
Q ss_pred CCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cC--ChHHHH
Q 007684 136 TLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVA---KE--DPEMAF 210 (593)
Q Consensus 136 ~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~---~g--~~~~A~ 210 (593)
+.+...|...+.+..... . .....+.+|.++|++..+.. +-....|..+.-+|.. .+ ..+...
T Consensus 191 p~~~~Aydl~Lra~~~l~----------~-~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~ 258 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLL----------H-GDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLA 258 (372)
T ss_dssp CSSGGGHHHHHHHHHHHH----------H-CSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH----------c-CCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHH
Confidence 557788888876433210 0 00246789999999998764 3334455554444431 11 111111
Q ss_pred ---HHHHHHHhC-CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007684 211 ---DLVKQMKSF-GIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286 (593)
Q Consensus 211 ---~l~~~m~~~-g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m 286 (593)
+.++..... .-..+..+|..+...+...|++++|...+++....+ |+...|..+-..+.-.|+.++|.+.+.+.
T Consensus 259 ~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~A 336 (372)
T 3ly7_A 259 ALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTA 336 (372)
T ss_dssp HHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 122211111 123456788887777778899999999999999876 88888888888999999999999999988
Q ss_pred HHccCCCCHHHHHHHHHH
Q 007684 287 RTLVRQVSESTFKIIEDW 304 (593)
Q Consensus 287 ~~~~~~~~~~t~~~l~~~ 304 (593)
.. +.|...||....+.
T Consensus 337 lr--L~P~~~t~~~~~~l 352 (372)
T 3ly7_A 337 FN--LRPGANTLYWIENG 352 (372)
T ss_dssp HH--HSCSHHHHHHHHHS
T ss_pred Hh--cCCCcChHHHHhCc
Confidence 66 56888887655543
No 208
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=94.38 E-value=0.29 Score=37.12 Aligned_cols=67 Identities=10% Similarity=0.076 Sum_probs=52.8
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhc
Q 007684 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKL 238 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~ 238 (593)
|++++|.+.|++..+.. +.+..++..+...+...|++++|...+++..+.. |+ ...+..+...+.+.
T Consensus 23 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~~~~ 90 (91)
T 1na3_A 23 GDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAKQNLGNAKQKQ 90 (91)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhc
Confidence 59999999999988765 4577889999999999999999999999998743 44 44555555555443
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=94.17 E-value=0.22 Score=39.41 Aligned_cols=81 Identities=11% Similarity=-0.029 Sum_probs=62.4
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcc-CCCCHHHHHHHHH
Q 007684 225 LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV-RQVSESTFKIIED 303 (593)
Q Consensus 225 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~-~~~~~~t~~~l~~ 303 (593)
...+..+...|.+.|++++|.+.|++..+..- -+...|..+..+|...|++++|.+.+++..+.. ..++.....-+..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~ 85 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQD 85 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHH
Confidence 46778889999999999999999999986542 245578899999999999999999999887632 2345555555555
Q ss_pred HHh
Q 007684 304 WFD 306 (593)
Q Consensus 304 ~~~ 306 (593)
.+.
T Consensus 86 ~l~ 88 (100)
T 3ma5_A 86 AKL 88 (100)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 210
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.98 E-value=0.43 Score=41.21 Aligned_cols=91 Identities=16% Similarity=0.022 Sum_probs=67.8
Q ss_pred CCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhCCCCC-C--cccHHHHHH
Q 007684 160 NGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKE---DPEMAFDLVKQMKSFGIPP-K--LRSYGPALF 233 (593)
Q Consensus 160 ~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p-~--~~ty~~li~ 233 (593)
.+++.....+.+..+.+-|.+....| .++..+--.+.-+++++. +.+++..++++..+.. .| + ...|+ +--
T Consensus 3 ~~l~~~l~~~~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~-LAv 79 (152)
T 1pc2_A 3 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFY-LAV 79 (152)
T ss_dssp CCCSCSCCHHHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHH-HHH
T ss_pred hHHhCcCCHHHHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHH-HHH
Confidence 45666667788888899998888777 477777777888888888 6668999999887754 24 1 23454 566
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 007684 234 GFCKLGNTDKAYEVDAHMGE 253 (593)
Q Consensus 234 ~~~~~g~~~~A~~l~~~m~~ 253 (593)
+|.+.|++++|.+.++.+.+
T Consensus 80 ~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 80 GNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp HHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHh
Confidence 66888888888888888775
No 211
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=93.90 E-value=2.8 Score=44.84 Aligned_cols=180 Identities=8% Similarity=-0.040 Sum_probs=121.0
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007684 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTS 195 (593)
Q Consensus 116 ~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ 195 (593)
+...-++|++.++++.+..-. +...|+.-=.+....+.. .........++++++.++++.+.. +-+..+|+.
T Consensus 41 ~~~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~------~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~h 112 (567)
T 1dce_A 41 AGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETE------KSPEESAALVKAELGFLESCLRVN-PKSYGTWHH 112 (567)
T ss_dssp TTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTT------SCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccc------cchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 334556889999999887322 344454432222222100 000000012899999999999877 568888998
Q ss_pred HHHHHHhcC--ChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007684 196 VARLAVAKE--DPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLG-NTDKAYEVDAHMGESGVVPEEPELSALLKLSVD 272 (593)
Q Consensus 196 li~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~ 272 (593)
-.-++.+.+ +++++++.++++.+... -+-..|+.-...+.+.| ..+++.+.++++.+... -|...|+....++.+
T Consensus 113 R~w~l~~l~~~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 113 RCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQ 190 (567)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHh
Confidence 888888999 77999999999998543 34567877777788888 88999999999987654 367778887777665
Q ss_pred c--------------CCHHHHHHHHHHHHHccCCC-CHHHHHHHHHHHhc
Q 007684 273 A--------------KKVDKVYEILHRLRTLVRQV-SESTFKIIEDWFDS 307 (593)
Q Consensus 273 ~--------------g~~~~a~~~l~~m~~~~~~~-~~~t~~~l~~~~~~ 307 (593)
. +.++++++.+++.... .| +++.+.-+-..+..
T Consensus 191 l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~ 238 (567)
T 1dce_A 191 LHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGR 238 (567)
T ss_dssp HSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSC
T ss_pred hcccccccccccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhc
Confidence 3 5578899888888763 34 34444444444433
No 212
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=93.80 E-value=0.55 Score=46.52 Aligned_cols=180 Identities=12% Similarity=0.035 Sum_probs=122.3
Q ss_pred cccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCC
Q 007684 79 VNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRG--DVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSE 156 (593)
Q Consensus 79 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~ 156 (593)
++++...+..++ ...+....+|+.-.-.+.+.+ ++++++.+++.+.+...+ |.+.|+----+....
T Consensus 90 l~~EL~~~~~~L-------~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l---- 157 (331)
T 3dss_A 90 VKAELGFLESCL-------RVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQA---- 157 (331)
T ss_dssp HHHHHHHHHHHH-------HHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHH-------HhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHh----
Confidence 345555665554 444556667766666666666 589999999999987533 777777665555554
Q ss_pred CCCCCCCccccccc-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------------CChHHHHHHHHHHHhCCC
Q 007684 157 SSENGDRENDSNLG-LKRGFEIFQQMITDKVDPNEATFTSVARLAVAK--------------EDPEMAFDLVKQMKSFGI 221 (593)
Q Consensus 157 ~~~~~~~~~~~~g~-~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~--------------g~~~~A~~l~~~m~~~g~ 221 (593)
|. .+++++.++++.+.. +-|..+|+.....+.+. +.++++++.+++....
T Consensus 158 ------------~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~-- 222 (331)
T 3dss_A 158 ------------AVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT-- 222 (331)
T ss_dssp ------------TCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--
T ss_pred ------------CcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--
Confidence 34 689999999999877 66888888877776665 4578899999988873
Q ss_pred CCC-cccHHHHHHHHHhc-----------CChhHHHHHHHHHHhCCCCCCHHHHHHHH-----HHHHhcCCHHHHHHHHH
Q 007684 222 PPK-LRSYGPALFGFCKL-----------GNTDKAYEVDAHMGESGVVPEEPELSALL-----KLSVDAKKVDKVYEILH 284 (593)
Q Consensus 222 ~p~-~~ty~~li~~~~~~-----------g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll-----~~~~~~g~~~~a~~~l~ 284 (593)
.|+ ...|+-+-..+.+. +.++++.+.++++.+.. ||. .|+.+- .+....|..+++...+.
T Consensus 223 ~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~--pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~ 299 (331)
T 3dss_A 223 DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE--PEN-KWCLLTIILLMRALDPLLYEKETLQYFS 299 (331)
T ss_dssp STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC--TTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC--ccc-chHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 355 45566444444444 45788999999988543 553 333221 22224567778888888
Q ss_pred HHHH
Q 007684 285 RLRT 288 (593)
Q Consensus 285 ~m~~ 288 (593)
++.+
T Consensus 300 ~l~~ 303 (331)
T 3dss_A 300 TLKA 303 (331)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8876
No 213
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=93.75 E-value=0.64 Score=51.86 Aligned_cols=97 Identities=7% Similarity=0.116 Sum_probs=67.5
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 007684 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVD 248 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 248 (593)
|++++|+++.+.+ .+...|..+...+.+.++++.|.+.|.++.. |..+...|...|+.++..++-
T Consensus 666 ~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~ 730 (814)
T 3mkq_A 666 GQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLA 730 (814)
T ss_dssp TCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHH
Confidence 5888888886543 4778999999999999999999999998864 344666666677776666655
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007684 249 AHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286 (593)
Q Consensus 249 ~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m 286 (593)
+.....|. ++.-..+|.+.|++++|.+++.++
T Consensus 731 ~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 731 KDAETTGK------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 55544432 344444555566677776666655
No 214
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=93.47 E-value=0.63 Score=49.97 Aligned_cols=174 Identities=9% Similarity=0.018 Sum_probs=120.4
Q ss_pred cCCCcc-cCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCC----------HHHHHHHHHHHHHCCCCCCHHHHH
Q 007684 75 KKSTVN-ESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGD----------VFEALRLYDDARSNGITLSQHHYN 143 (593)
Q Consensus 75 ~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~~~ty~ 143 (593)
+.|..+ +|...+..++ ...+....+|+.--..+.+.|+ +++|++.++.+.+..-+ +..+|+
T Consensus 40 ~~~~~~eeal~~~~~~l-------~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~ 111 (567)
T 1dce_A 40 QAGELDESVLELTSQIL-------GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWH 111 (567)
T ss_dssp HTTCCSHHHHHHHHHHH-------HHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HcCCCCHHHHHHHHHHH-------HHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 344443 4566665555 4445555666665555555555 99999999999877432 566666
Q ss_pred HHHHHHHccCCCCCCCCCCCcccccc--cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhCC
Q 007684 144 VLLYVCSCKCGSESSENGDRENDSNL--GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKE-DPEMAFDLVKQMKSFG 220 (593)
Q Consensus 144 ~ll~~~~~~~~~~~~~~~~~~~~~~g--~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g-~~~~A~~l~~~m~~~g 220 (593)
.---+..+. | +++++++.++++.+.. +-|..+|+.-.-++.+.| .++++++.++++.+..
T Consensus 112 hR~w~l~~l----------------~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~ 174 (567)
T 1dce_A 112 HRCWLLSRL----------------PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN 174 (567)
T ss_dssp HHHHHHHTC----------------SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHc----------------ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC
Confidence 554455543 4 6799999999999887 668899999888888889 8999999999998754
Q ss_pred CCCCcccHHHHHHHHHhc--------------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 007684 221 IPPKLRSYGPALFGFCKL--------------GNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK 275 (593)
Q Consensus 221 ~~p~~~ty~~li~~~~~~--------------g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~ 275 (593)
. -+...|+.....+.+. +.+++|.+.+.+.....- -|...|..+-..+.+.++
T Consensus 175 p-~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P-~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 175 F-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp C-CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCS-SCSHHHHHHHHHHSCCCC
T ss_pred C-CCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCC
Confidence 3 3456777777776663 456888888888775431 245567776666666555
No 215
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=93.25 E-value=4.1 Score=42.66 Aligned_cols=33 Identities=12% Similarity=-0.044 Sum_probs=26.6
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 007684 101 ESPEGVLRHKLDMCSKRGDVFEALRLYDDARSN 133 (593)
Q Consensus 101 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 133 (593)
+..+..|-..+.-+.+.|+++.|..+|++....
T Consensus 210 p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 210 YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 444566666677778899999999999999887
No 216
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.12 E-value=1.6 Score=38.68 Aligned_cols=98 Identities=11% Similarity=0.134 Sum_probs=77.3
Q ss_pred cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHH
Q 007684 168 NLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEV 247 (593)
Q Consensus 168 ~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l 247 (593)
.|+++.|.++-+++ -+...|..|...+...|+++.|.+.|.+.+. |..+.--|.-.|+.++-..+
T Consensus 18 lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 18 YGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp TTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred cCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 57999999998876 3789999999999999999999999987654 55677778888888887766
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007684 248 DAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286 (593)
Q Consensus 248 ~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m 286 (593)
-+.....|- ++.-+..+.-.|+++++.++|.+.
T Consensus 83 a~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 83 QNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 665554442 566666677788888888887554
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=92.45 E-value=1.9 Score=43.04 Aligned_cols=151 Identities=9% Similarity=-0.025 Sum_probs=94.4
Q ss_pred CCCCHHHHHHHHHHHH--cC---CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCCCCCCCCCCcccccccHHH
Q 007684 100 RESPEGVLRHKLDMCS--KR---GDVFEALRLYDDARSNGITLSQ-HHYNVLLYVCSCKCGSESSENGDRENDSNLGLKR 173 (593)
Q Consensus 100 ~~~~~~~~~~li~~~~--~~---g~~~~A~~l~~~m~~~g~~p~~-~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~ 173 (593)
.+.+...|...+.+.. .. .+..+|..+|++..+. .|+- ..|..+--+|...... . . ........
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~----~---~-~~~~~~~~ 259 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQ----H---P-LDEKQLAA 259 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHH----S---C-CCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhcc----C---C-CchhhHHH
Confidence 3444555666665533 22 3468899999999987 5652 3333222222110000 0 0 00011111
Q ss_pred HHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 007684 174 GFEIFQQMIT-DKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMG 252 (593)
Q Consensus 174 a~~l~~~M~~-~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~ 252 (593)
...-++.... ..-+.+..+|.++...+...|++++|...+++....+ |+...|..+-..+.-.|+.++|.+.|++..
T Consensus 260 l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 260 LNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp HHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1112222111 2226688889888888888899999999999999865 787777777888899999999999999887
Q ss_pred hCCCCCCHHHHH
Q 007684 253 ESGVVPEEPELS 264 (593)
Q Consensus 253 ~~g~~p~~~t~~ 264 (593)
.. .|...||.
T Consensus 338 rL--~P~~~t~~ 347 (372)
T 3ly7_A 338 NL--RPGANTLY 347 (372)
T ss_dssp HH--SCSHHHHH
T ss_pred hc--CCCcChHH
Confidence 54 47777754
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=92.45 E-value=0.3 Score=38.00 Aligned_cols=56 Identities=20% Similarity=0.136 Sum_probs=34.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCC-cc-cHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 007684 197 ARLAVAKEDPEMAFDLVKQMKSFGIPPK-LR-SYGPALFGFCKLGNTDKAYEVDAHMGES 254 (593)
Q Consensus 197 i~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~-ty~~li~~~~~~g~~~~A~~l~~~m~~~ 254 (593)
...+...|++++|.+.+++..+.. |+ .. .|..+..+|.+.|+.++|.+.|++..+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344556666777777776665532 33 34 5555666666666777776666666543
No 219
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=92.37 E-value=0.36 Score=42.09 Aligned_cols=109 Identities=8% Similarity=-0.013 Sum_probs=73.4
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007684 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTS 195 (593)
Q Consensus 116 ~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ 195 (593)
+.+.+++|...++...+.. +-+...|+.+=.++...+..+ .+....+.+++|+..|++..+.. +-+..+|..
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~------~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~ 85 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFH------SISDAKQMIQEAITKFEEALLID-PKKDEAVWC 85 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHS------CHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccc------hhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHH
Confidence 3356889999999888763 225566655544444431000 00000123679999999998876 457779999
Q ss_pred HHHHHHhcC-----------ChHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 007684 196 VARLAVAKE-----------DPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234 (593)
Q Consensus 196 li~~~~~~g-----------~~~~A~~l~~~m~~~g~~p~~~ty~~li~~ 234 (593)
+-.+|...| ++++|.+.|++..+ +.|+...|...+..
T Consensus 86 LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 86 IGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 999998874 89999999999988 55887766655543
No 220
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=91.22 E-value=6 Score=33.23 Aligned_cols=120 Identities=13% Similarity=0.085 Sum_probs=88.4
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-CCC----------------CCCcccHHHH
Q 007684 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS-FGI----------------PPKLRSYGPA 231 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~-~g~----------------~p~~~ty~~l 231 (593)
|..+++.++..+..... +..-||-+|--....-+-+-.+++++.+-+ ..+ .-+..-.+..
T Consensus 21 G~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~se~vd~A 97 (172)
T 1wy6_A 21 GYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHVNKA 97 (172)
T ss_dssp TCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHHHHH
T ss_pred hhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcchHHHHHHH
Confidence 68889999999887643 555677777666677777777777777643 111 1233455667
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCC
Q 007684 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQ 292 (593)
Q Consensus 232 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~ 292 (593)
++.+..+|.-|.-.+++.++.. +-+|+....-.+..+|.+-|+..++.+++.+.-+.|..
T Consensus 98 Ld~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 98 LDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 7788888888888888888643 55677888889999999999999999999999887763
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=90.20 E-value=2.3 Score=40.88 Aligned_cols=106 Identities=10% Similarity=0.010 Sum_probs=81.4
Q ss_pred ccHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCC--cccHHHHHHHHHhc
Q 007684 169 LGLKRGFEIFQQMITDKVDPN---EATFTSVARLAVAK-----EDPEMAFDLVKQMKSFGIPPK--LRSYGPALFGFCKL 238 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~~p~---~~ty~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~--~~ty~~li~~~~~~ 238 (593)
+....|..++++..+.. |+ -..|+.+...|... |+.++|.+.|++..+ +.|+ ..++......+|+.
T Consensus 177 ~~l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~ 252 (301)
T 3u64_A 177 DTVHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIP 252 (301)
T ss_dssp HHHHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTT
T ss_pred HhHHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHh
Confidence 56778888888877654 55 56899999999995 999999999999988 4463 67777788888885
Q ss_pred -CChhHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007684 239 -GNTDKAYEVDAHMGESGVV--PEEPELSALLKLSVDAKKVDKVYEILHRL 286 (593)
Q Consensus 239 -g~~~~A~~l~~~m~~~g~~--p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m 286 (593)
|+.++|.+.+++....... |+....+.+- -++|..++.++
T Consensus 253 ~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~--------q~eA~~LL~~~ 295 (301)
T 3u64_A 253 LNNRAGFDEALDRALAIDPESVPHNKLLVILS--------QKRARWLKAHV 295 (301)
T ss_dssp TTCHHHHHHHHHHHHHCCGGGCSSCHHHHHHH--------HHHHHHHHHTH
T ss_pred cCCHHHHHHHHHHHHcCCCCCCCChhHHHHHH--------HHHHHHHHHHh
Confidence 9999999999999987766 7755444332 34555555544
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=89.02 E-value=1.8 Score=33.69 Aligned_cols=67 Identities=9% Similarity=-0.066 Sum_probs=46.4
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 007684 187 DPNEATFTSVARLAVAKED---PEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESG 255 (593)
Q Consensus 187 ~p~~~ty~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g 255 (593)
+.|...+..+..++...++ .++|..++++..+. .|+ .+....+-..+.+.|++++|.+.|+++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4566666777776654444 57888888887763 355 4566666777778888888888888887543
No 223
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=89.00 E-value=1.4 Score=33.92 Aligned_cols=51 Identities=4% Similarity=0.087 Sum_probs=44.7
Q ss_pred cccHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007684 168 NLGLKRGFEIFQQMITDKVDPNEA-TFTSVARLAVAKEDPEMAFDLVKQMKSF 219 (593)
Q Consensus 168 ~g~~~~a~~l~~~M~~~g~~p~~~-ty~~li~~~~~~g~~~~A~~l~~~m~~~ 219 (593)
.|++++|.+.|++..+.. +.+.. .+..+..++...|++++|.+.|++..+.
T Consensus 13 ~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 13 QGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 369999999999998765 44667 8999999999999999999999999874
No 224
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=88.48 E-value=3.1 Score=43.62 Aligned_cols=111 Identities=8% Similarity=0.099 Sum_probs=80.1
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCCCc-ccHHHHHHHHHhcCChhHHHH
Q 007684 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAK-EDPEMAFDLVKQMKSFGIPPKL-RSYGPALFGFCKLGNTDKAYE 246 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~A~~ 246 (593)
|..+.|..+|+.. ... ..+...|...+..-... ++.+.|..+|+...+.- |+. ..+...+....+.|+.+.|..
T Consensus 300 ~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~ 375 (493)
T 2uy1_A 300 RGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENARA 375 (493)
T ss_dssp HCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 4799999999988 321 23444554333222223 36999999999987632 442 334556676778999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 247 VDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 247 l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
+|+... .....|...+..-...|+.+.+..++++..+
T Consensus 376 l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 376 LFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999973 2567788888888889999999999988875
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=87.87 E-value=2.8 Score=36.06 Aligned_cols=89 Identities=11% Similarity=0.240 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCC--CHHHHHHH
Q 007684 119 DVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDP--NEATFTSV 196 (593)
Q Consensus 119 ~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p--~~~ty~~l 196 (593)
.+..+.+-|.+..+.|.......|+.-+.++.... .++.++++.+|++..+.. .| ....+-.|
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~--------------~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~L 77 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKY--------------NDDIRKGIVLLEELLPKG-SKEEQRDYVFYL 77 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSS--------------HHHHHHHHHHHHHHHHHS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCC--------------HHHHHHHHHHHHHHHhcC-CccchHHHHHHH
Confidence 35667777777777665434455555455444321 247889999999988765 34 34456667
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 007684 197 ARLAVAKEDPEMAFDLVKQMKSFGIPPK 224 (593)
Q Consensus 197 i~~~~~~g~~~~A~~l~~~m~~~g~~p~ 224 (593)
.-+|.+.|++++|.+.++.+.+ +.|+
T Consensus 78 Av~~~kl~~Y~~A~~y~~~lL~--ieP~ 103 (152)
T 1pc2_A 78 AVGNYRLKEYEKALKYVRGLLQ--TEPQ 103 (152)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHH--HCTT
T ss_pred HHHHHHccCHHHHHHHHHHHHh--cCCC
Confidence 7788999999999999999988 4575
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=86.93 E-value=2.8 Score=33.15 Aligned_cols=66 Identities=14% Similarity=0.043 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC------CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007684 188 PNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG------IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGE 253 (593)
Q Consensus 188 p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g------~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 253 (593)
.+..-+-.|...+.+.++++.|...+++..+.- -.+....|..+..+|.+.|+.++|...+++...
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 344455566777777777777777777665420 113345566666666677777777776666654
No 227
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=86.75 E-value=7.9 Score=42.81 Aligned_cols=102 Identities=18% Similarity=0.198 Sum_probs=73.3
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHH
Q 007684 113 MCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEAT 192 (593)
Q Consensus 113 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~t 192 (593)
.+.+.|++++|+++.+.+ .+...|..|-..|.+. |+++.|.+.|.++..
T Consensus 661 ~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~----------------~~~~~A~~~y~~~~d--------- 709 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR----------------FNFKLAIEAFTNAHD--------- 709 (814)
T ss_dssp HHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHTC---------
T ss_pred hhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc----------------CCHHHHHHHHHHccC---------
Confidence 345567788877775543 3668888888888886 599999999998863
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 007684 193 FTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHM 251 (593)
Q Consensus 193 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m 251 (593)
|..+...+...|+.+...++-+.....| -++....+|.+.|++++|.+++.++
T Consensus 710 ~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 710 LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4466666777888887776666555543 3566666777788888887777665
No 228
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=85.10 E-value=16 Score=30.70 Aligned_cols=141 Identities=10% Similarity=0.033 Sum_probs=96.4
Q ss_pred HHHHHHH--HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-------CCCCCCCCCcccccccHHHHHHH
Q 007684 107 LRHKLDM--CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCG-------SESSENGDRENDSNLGLKRGFEI 177 (593)
Q Consensus 107 ~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~-------~~~~~~~~~~~~~~g~~~~a~~l 177 (593)
...||.+ ..-.|.+++..+++.+..+.. +..-||-.|.--...-. .+..+.+. ...++|++.+..+.
T Consensus 8 ~kkLmeAK~~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiF-Dis~C~NlKrVi~C 83 (172)
T 1wy6_A 8 IRKLMDAKKFLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYF-DLDKCQNLKSVVEC 83 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS-CGGGCSCTHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhc-CcHhhhcHHHHHHH
Confidence 4556666 556799999999999877542 44555555442222100 00000111 12456788888887
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 007684 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVV 257 (593)
Q Consensus 178 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 257 (593)
|-.+- -+..-+...+......|+-|+-.+++.++.. +..|+....-.+..||.+.|+..+|.+++.+.-+.|++
T Consensus 84 ~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 84 GVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 76654 2334577788899999999999999999644 34577777777899999999999999999999988874
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=84.44 E-value=21 Score=31.44 Aligned_cols=130 Identities=13% Similarity=0.110 Sum_probs=93.7
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCH
Q 007684 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNE 190 (593)
Q Consensus 111 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~ 190 (593)
.....+.|+++.|.++-+++ -+...|..|-..+... |+++-|.+.|.....
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~----------------gn~~lAe~cy~~~~D------- 62 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQ----------------GNASLAEMIYQTQHS------- 62 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHTTC-------
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHc----------------CChHHHHHHHHHhCC-------
Confidence 34566889999999998876 2678999998877765 599999999988773
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007684 191 ATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLS 270 (593)
Q Consensus 191 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~ 270 (593)
|..+.-.|.-.|+.+...++-+.....| -++.....+...|+++++.++|.+. |--|... -..
T Consensus 63 --~~~L~~Ly~~tg~~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA~------~~A 125 (177)
T 3mkq_B 63 --FDKLSFLYLVTGDVNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG---GSLPLAY------AVA 125 (177)
T ss_dssp --HHHHHHHHHHHTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT---TCHHHHH------HHH
T ss_pred --HHHHHHHHHHhCCHHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC---CChHHHH------HHH
Confidence 4456666777888887776665555443 5777888888999999999999765 3222111 112
Q ss_pred HhcCCHHHHHHHHHHH
Q 007684 271 VDAKKVDKVYEILHRL 286 (593)
Q Consensus 271 ~~~g~~~~a~~~l~~m 286 (593)
...|..+.|.++++.+
T Consensus 126 ~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 126 KANGDEAAASAFLEQA 141 (177)
T ss_dssp HHTTCHHHHHHHHHHT
T ss_pred HHcCcHHHHHHHHHHh
Confidence 2357777777776665
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=83.46 E-value=5.8 Score=38.13 Aligned_cols=94 Identities=11% Similarity=0.033 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHHhCCCCCC---cccHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCH
Q 007684 206 PEMAFDLVKQMKSFGIPPK---LRSYGPALFGFCKL-----GNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA-KKV 276 (593)
Q Consensus 206 ~~~A~~l~~~m~~~g~~p~---~~ty~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~-g~~ 276 (593)
...|..++++..+ +-|+ -..|..+...|.+. |+.++|.+.|++..+.+-.-+..++....+.++.. |+.
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 3566677777666 4466 45899999999995 99999999999998754222467777888888884 999
Q ss_pred HHHHHHHHHHHHccCC--CCHHHHHHH
Q 007684 277 DKVYEILHRLRTLVRQ--VSESTFKII 301 (593)
Q Consensus 277 ~~a~~~l~~m~~~~~~--~~~~t~~~l 301 (593)
+.+.+.+++..+.... |+....+.+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 9999999999987666 665444433
No 231
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=82.29 E-value=8 Score=30.38 Aligned_cols=70 Identities=7% Similarity=-0.152 Sum_probs=54.3
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHH
Q 007684 226 RSYGPALFGFCKLGNTDKAYEVDAHMGESG------VVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSEST 297 (593)
Q Consensus 226 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g------~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t 297 (593)
.-+-.|...+.+.|+++.|...|+.....- -.+....+..|..++.+.|+.++|..++++..+ ..|+...
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~~~ 81 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQR 81 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCHH
Confidence 334457888899999999999999876421 124566789999999999999999999999976 4455433
No 232
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=78.33 E-value=6.3 Score=39.77 Aligned_cols=76 Identities=11% Similarity=-0.003 Sum_probs=48.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----ccCCCCHHHHHHHHH
Q 007684 229 GPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT-----LVRQVSESTFKIIED 303 (593)
Q Consensus 229 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~-----~~~~~~~~t~~~l~~ 303 (593)
..++.++...|+.++|......+... ...++..|..||.++.+.|+..+|.+.|+++++ .|+.|++.+-.....
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~ 253 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER 253 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 34556666677777776666665532 224666677777777777777777777766543 477777776655554
Q ss_pred HH
Q 007684 304 WF 305 (593)
Q Consensus 304 ~~ 305 (593)
..
T Consensus 254 il 255 (388)
T 2ff4_A 254 IL 255 (388)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 233
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=76.79 E-value=12 Score=37.76 Aligned_cols=70 Identities=10% Similarity=0.085 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH-----hCCCCCCHHH
Q 007684 192 TFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMG-----ESGVVPEEPE 262 (593)
Q Consensus 192 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~-----~~g~~p~~~t 262 (593)
+...++.++...|+.++|...+..+.... +-+...|..+|.+|.+.|+..+|.+.|+... +.|+.|...+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 45668888899999999999999987643 2356799999999999999999999999875 3589998765
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=75.23 E-value=25 Score=38.71 Aligned_cols=128 Identities=9% Similarity=0.022 Sum_probs=81.2
Q ss_pred HHHHHHHHHcCCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC-
Q 007684 107 LRHKLDMCSKRGD-VFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD- 184 (593)
Q Consensus 107 ~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~- 184 (593)
-..++..+.-.++ ++.|..+|+++.+..-.-+.....+++......+ ..--+|..++.+..+.
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~---------------~~Ev~av~ll~~~l~~~ 315 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIE---------------TKELDMITILNETLDPL 315 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCG---------------GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhh---------------hhhHHHHHHHHHHHHHh
Confidence 4455566666666 6889999999988732212222233344433321 1233455555544321
Q ss_pred -----CCCC-CHH----------HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHH
Q 007684 185 -----KVDP-NEA----------TFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEV 247 (593)
Q Consensus 185 -----g~~p-~~~----------ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l 247 (593)
...+ +.. ..+.-.+-|...|+++.|+++-++... +.|+ -.+|-.|..+|.+.|+++.|+-.
T Consensus 316 ~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLt 393 (754)
T 4gns_B 316 LSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFA 393 (754)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHH
Confidence 1122 211 122223446678999999999999876 5577 57999999999999999999999
Q ss_pred HHHH
Q 007684 248 DAHM 251 (593)
Q Consensus 248 ~~~m 251 (593)
++-+
T Consensus 394 LNSc 397 (754)
T 4gns_B 394 INSM 397 (754)
T ss_dssp HHHS
T ss_pred HhcC
Confidence 9887
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=74.61 E-value=40 Score=28.83 Aligned_cols=106 Identities=13% Similarity=0.097 Sum_probs=73.4
Q ss_pred CCHHHHHHHHHHHHhcCCh------HHHHHHHHHHHhCCCCCCc----ccHHHHHHHHH---hcCChhHHHHHHHHHHhC
Q 007684 188 PNEATFTSVARLAVAKEDP------EMAFDLVKQMKSFGIPPKL----RSYGPALFGFC---KLGNTDKAYEVDAHMGES 254 (593)
Q Consensus 188 p~~~ty~~li~~~~~~g~~------~~A~~l~~~m~~~g~~p~~----~ty~~li~~~~---~~g~~~~A~~l~~~m~~~ 254 (593)
-|..++=..+...-+.|+. +...++|++... .++|+. +.|--+.--|+ ..+++++|.++|+.+...
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia-~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE-ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH-HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH-cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3555666666666666777 777788887765 355543 23333333222 347999999999999764
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCH
Q 007684 255 GVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295 (593)
Q Consensus 255 g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~ 295 (593)
.+--...|......-.+.|+.++|.+++.+....+..|.+
T Consensus 90 -hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 90 -CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp -CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred -hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 3223667777777788999999999999999886666554
No 236
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=73.98 E-value=28 Score=26.70 Aligned_cols=62 Identities=11% Similarity=-0.089 Sum_probs=48.5
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 007684 170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234 (593)
Q Consensus 170 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~ 234 (593)
..++|..+|++..+.. +-+..+...+...+.+.|++++|...|+++.+.. |.......+...
T Consensus 24 ~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~--p~~~~~~~i~~~ 85 (93)
T 3bee_A 24 MTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN--DPNLDRVTIIES 85 (93)
T ss_dssp CCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC--CTTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCccHHHHHHH
Confidence 4689999999998876 5677788888999999999999999999999854 443334444443
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=72.75 E-value=13 Score=30.63 Aligned_cols=77 Identities=14% Similarity=0.038 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHhCCCCC-Cc--ccHHHHHHHHHhcCChhHHHH
Q 007684 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEM---AFDLVKQMKSFGIPP-KL--RSYGPALFGFCKLGNTDKAYE 246 (593)
Q Consensus 173 ~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~---A~~l~~~m~~~g~~p-~~--~ty~~li~~~~~~g~~~~A~~ 246 (593)
.+.+-|......| .++..+--.+.-+++++.+.+. +..+++++.+.+- | +. ..|. +--++.+.|++++|.+
T Consensus 19 ~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~-p~~~Rd~lY~-LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 19 KFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS-KEEQRDYVFY-LAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC-HHHHHHHHHH-HHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC-cchHHHHHHH-HHHHHHHhhhHHHHHH
Confidence 3344444333333 2444444444444454444433 4444444443321 2 11 1222 3344455555555555
Q ss_pred HHHHHH
Q 007684 247 VDAHMG 252 (593)
Q Consensus 247 l~~~m~ 252 (593)
.++.+.
T Consensus 96 ~~~~lL 101 (126)
T 1nzn_A 96 YVRGLL 101 (126)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
No 238
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=71.06 E-value=24 Score=27.89 Aligned_cols=60 Identities=12% Similarity=0.115 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 007684 243 KAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIED 303 (593)
Q Consensus 243 ~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~ 303 (593)
++.+-++.+....+.|+.....+.+++|.+-+++.-|.++|+-++.. +.....+|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 45555666666677777777777777777777777777777766553 2333445655554
No 239
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=68.20 E-value=22 Score=28.01 Aligned_cols=61 Identities=11% Similarity=0.066 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 007684 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233 (593)
Q Consensus 172 ~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~ 233 (593)
-++.+-++.+-...+.|+.....+.+++|-+..++..|.++|+-.+.+ +.+...+|..++.
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 344555555556666777777777777777777777777777777642 1233345665544
No 240
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=62.15 E-value=33 Score=28.25 Aligned_cols=104 Identities=14% Similarity=0.041 Sum_probs=68.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhH---HHHHHHHHHhCCCCC-CHHHH-HHHHHHH
Q 007684 196 VARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDK---AYEVDAHMGESGVVP-EEPEL-SALLKLS 270 (593)
Q Consensus 196 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~---A~~l~~~m~~~g~~p-~~~t~-~~Ll~~~ 270 (593)
++..-.....+..+.+-+.+....|. |+..+--.+..++.+...... +..++++....+ .| +...+ =.|--++
T Consensus 7 ~l~~~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~ 84 (126)
T 1nzn_A 7 VLNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGN 84 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHH
Confidence 33444444556667777776666555 665554457778888776665 899999988754 23 23333 3345578
Q ss_pred HhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 007684 271 VDAKKVDKVYEILHRLRTLVRQVSESTFKIIED 303 (593)
Q Consensus 271 ~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~ 303 (593)
.+.|++++|.+.++.+.+ ..|+-.-...|..
T Consensus 85 yklg~Y~~A~~~~~~lL~--~eP~n~QA~~Lk~ 115 (126)
T 1nzn_A 85 YRLKEYEKALKYVRGLLQ--TEPQNNQAKELER 115 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 899999999999999987 4565444444443
No 241
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=59.82 E-value=19 Score=32.59 Aligned_cols=145 Identities=14% Similarity=0.103 Sum_probs=76.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCC
Q 007684 109 HKLDMCSKRGDVFEALRLYDDARSNGITLSQH---HYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDK 185 (593)
Q Consensus 109 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g 185 (593)
..+...++.|+++.+..+++.+.+.|..++.. -.+.|..++..+ +. ++++.+.+.|
T Consensus 11 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~-----------------~~----~~v~~Ll~~g 69 (241)
T 1k1a_A 11 TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITT-----------------LP----SVVRLLVTAG 69 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTT-----------------CH----HHHHHHHHTT
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcC-----------------CH----HHHHHHHHcC
Confidence 34666778899999988888887777655432 233444455543 43 4555556666
Q ss_pred CCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 007684 186 VDPNEAT--FTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK---LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEE 260 (593)
Q Consensus 186 ~~p~~~t--y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 260 (593)
..++... -.+.+...+..|+.+.+..+++.....++.++ ..-.+ .+...++.|+.+-+.. +.+.|..++.
T Consensus 70 ~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~~~~----Ll~~g~~~~~ 144 (241)
T 1k1a_A 70 ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLT-ALHVAVNTECQETVQL----LLERGADIDA 144 (241)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCC-HHHHHHHHTCHHHHHH----HHHTTCCTTC
T ss_pred CCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCc-HHHHHHHcCCHHHHHH----HHHcCCCccc
Confidence 5554321 12334455677888776666665432222222 22333 4445556677654444 4444554432
Q ss_pred HH---HHHHHHHHHhcCCHHHH
Q 007684 261 PE---LSALLKLSVDAKKVDKV 279 (593)
Q Consensus 261 ~t---~~~Ll~~~~~~g~~~~a 279 (593)
.. -.+.+...+..|+.+-+
T Consensus 145 ~~~~~g~t~L~~A~~~~~~~~v 166 (241)
T 1k1a_A 145 VDIKSGRSPLIHAVENNSLSMV 166 (241)
T ss_dssp CCTTTCCCHHHHHHHTTCHHHH
T ss_pred ccccCCCcHHHHHHHcCCHHHH
Confidence 11 12233334456665433
No 242
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=59.29 E-value=46 Score=27.78 Aligned_cols=60 Identities=12% Similarity=0.115 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 007684 243 KAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIED 303 (593)
Q Consensus 243 ~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~ 303 (593)
+..+-++.+....+.|+.....+.+++|.+-+++.-|.++|+-++.. +.+...+|..++.
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 34455566666777888888888888888888888888888777653 3344556666654
No 243
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=53.15 E-value=8.1 Score=40.02 Aligned_cols=197 Identities=15% Similarity=0.137 Sum_probs=128.9
Q ss_pred CcccHHHHHHHHHHh--CCChhhHHhhcCCcc-ccch-HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHH
Q 007684 33 NCHTYRSLLCWHMHS--FTKPITDIKQNRFSA-DLTT-GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLR 108 (593)
Q Consensus 33 d~~~~~~ll~~~~~~--~~~~~~~m~~~g~~~-~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (593)
|...|.-++..-.+. ..+++..+.-.+-.. +... +.|+-+|++.+++.+-++.... ++.....
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~elEefl~~-------------~N~A~iq 148 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFING-------------PNNAHIQ 148 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSSTTTSTTSC-------------CSSSCTH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHHHHHHHHcC-------------CCcccHH
Confidence 444555555555433 445554333333222 3344 8999999999999998877621 1222256
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHccCCCCCC----------
Q 007684 109 HKLDMCSKRGDVFEALRLYDDARSNG--------------------ITLSQHHYNVLLYVCSCKCGSESS---------- 158 (593)
Q Consensus 109 ~li~~~~~~g~~~~A~~l~~~m~~~g--------------------~~p~~~ty~~ll~~~~~~~~~~~~---------- 158 (593)
.+-+-|-..|.++.|.-+|..+.... -.-++.||.-+-.+|...+....+
T Consensus 149 ~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh 228 (624)
T 3lvg_A 149 QVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH 228 (624)
T ss_dssp HHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC
T ss_pred HHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc
Confidence 77788888888888887776543221 012668899988899998765543
Q ss_pred ----CCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-hCCCCCC-------cc
Q 007684 159 ----ENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMK-SFGIPPK-------LR 226 (593)
Q Consensus 159 ----~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~-~~g~~p~-------~~ 226 (593)
++++.-|-..|.+++-+.+++.-...- ..-...||-|.-.|++- ++++.++-++..- +.++ |. ..
T Consensus 229 adeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNi-pKviracE~ah 305 (624)
T 3lvg_A 229 ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNI-PKVLRAAEQAH 305 (624)
T ss_dssp SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCC-TTTHHHHTTTT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccH-HHHHHHHHHHh
Confidence 355677888999999999998766322 46778999999989885 4555544444332 2333 43 35
Q ss_pred cHHHHHHHHHhcCChhHHH
Q 007684 227 SYGPALFGFCKLGNTDKAY 245 (593)
Q Consensus 227 ty~~li~~~~~~g~~~~A~ 245 (593)
.|.-++..|+.-.++|.|.
T Consensus 306 LW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 306 LWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp CHHHHHHHHHHHTCHHHHH
T ss_pred hHHHHHHHHhcchhHHHHH
Confidence 6888888888888887654
No 244
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=52.52 E-value=61 Score=27.06 Aligned_cols=60 Identities=12% Similarity=0.086 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 007684 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233 (593)
Q Consensus 173 ~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~ 233 (593)
+..+-++.+....+.|+.....+.+++|-+..|+-.|.++|+-.+.+ +.+...+|..++.
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 44444455555666777777777777777777777777777776642 2233445665543
No 245
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=49.45 E-value=2.7e+02 Score=32.19 Aligned_cols=118 Identities=11% Similarity=0.053 Sum_probs=65.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCCc--ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007684 193 FTSVARLAVAKEDPEMAFDLVKQMKSFGI--PPKL--RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268 (593)
Q Consensus 193 y~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~--~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~ 268 (593)
|.-++..+-+.+..+.+.++-+...+..- .++. ..|..+..++...|++++|...+-.+.....+ ...+..|+.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~ 979 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHH
Confidence 55566666666666666655554443211 1111 24666777777777777777777666544332 344555666
Q ss_pred HHHhcC------------CHHHHHHHHHHHHHc--cCCCCHHHHHHHHHHHhcchhhh
Q 007684 269 LSVDAK------------KVDKVYEILHRLRTL--VRQVSESTFKIIEDWFDSVDAAE 312 (593)
Q Consensus 269 ~~~~~g------------~~~~a~~~l~~m~~~--~~~~~~~t~~~l~~~~~~~~~~~ 312 (593)
.+|..| ..+++.+++....++ .....+..|.+|..|.-..++..
T Consensus 980 ~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR 1037 (1139)
T 4fhn_B 980 QLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYR 1037 (1139)
T ss_dssp HHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTS
T ss_pred HHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChH
Confidence 555544 445556665543322 12333456788888876655443
No 246
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.86 E-value=1e+02 Score=31.17 Aligned_cols=127 Identities=9% Similarity=-0.049 Sum_probs=81.3
Q ss_pred cHHHHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCcccHHHHHHHHHhcCChhHHH
Q 007684 170 GLKRGFEIFQQMITDKV-DPN-EATFTSVARLAVAKEDPEMAFDLVKQMKSFG--IPPKLRSYGPALFGFCKLGNTDKAY 245 (593)
Q Consensus 170 ~~~~a~~l~~~M~~~g~-~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~ty~~li~~~~~~g~~~~A~ 245 (593)
.+++-.+......+... ... ..+...+...|.+.|+.+.|.+.+.++...- ..-....+-.+|..+...+++..|.
T Consensus 109 ~l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~ 188 (429)
T 4b4t_R 109 KIKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVK 188 (429)
T ss_dssp CHHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHH
Confidence 34444455555544322 221 1267788999999999999999999998633 3233567888899999999999999
Q ss_pred HHHHHHHh---CCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHH
Q 007684 246 EVDAHMGE---SGVVPEEPEL--SALLKLSVDAKKVDKVYEILHRLRTLVRQVSES 296 (593)
Q Consensus 246 ~l~~~m~~---~g~~p~~~t~--~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~ 296 (593)
..+.+... .+-.|+...- ..-...+...+++..|...|.+....-......
T Consensus 189 ~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~e~~ 244 (429)
T 4b4t_R 189 EKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTSIELT 244 (429)
T ss_dssp HHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCCSCHH
T ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCccchh
Confidence 99988763 3333332210 111112235678999988888776544333333
No 247
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=46.14 E-value=1.3e+02 Score=32.96 Aligned_cols=112 Identities=11% Similarity=0.152 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHH-H-HHHHHHHHhcCC-hHHHHHHHHHHHh------CCCCCCccc----H---HHHH--
Q 007684 171 LKRGFEIFQQMITDKVDPNEAT-F-TSVARLAVAKED-PEMAFDLVKQMKS------FGIPPKLRS----Y---GPAL-- 232 (593)
Q Consensus 171 ~~~a~~l~~~M~~~g~~p~~~t-y-~~li~~~~~~g~-~~~A~~l~~~m~~------~g~~p~~~t----y---~~li-- 232 (593)
.+.|.++|+++.+.. |...+ | ..+|..+...++ --+|.+++.+..+ ....+.... . ..|+
T Consensus 265 ~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~ 342 (754)
T 4gns_B 265 VDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNI 342 (754)
T ss_dssp HHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHH
Confidence 578999999998765 33222 2 233333333332 2234555544432 122222211 1 1133
Q ss_pred --HHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007684 233 --FGFCKLGNTDKAYEVDAHMGESGVVPE-EPELSALLKLSVDAKKVDKVYEILHRL 286 (593)
Q Consensus 233 --~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~Ll~~~~~~g~~~~a~~~l~~m 286 (593)
.-+...|+++.|.++-++... ..|+ -.+|..|..+|...|+++.|+-.++.+
T Consensus 343 Qa~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 343 QTNFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 334468999999999998774 3455 677999999999999999999888887
No 248
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=45.85 E-value=91 Score=24.53 Aligned_cols=78 Identities=13% Similarity=-0.006 Sum_probs=50.3
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHH
Q 007684 170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDA 249 (593)
Q Consensus 170 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~ 249 (593)
..++|.-|-+-+...+. .+..--+-+..+...|++++|..+.+.+. .||+..|-++- -.+.|-.+++...+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALC--EYRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHH--HHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHH
Confidence 67788877777776653 33333333445667888888888776554 47777765443 336777777777777
Q ss_pred HHHhCC
Q 007684 250 HMGESG 255 (593)
Q Consensus 250 ~m~~~g 255 (593)
++..+|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 776554
No 249
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=45.58 E-value=51 Score=27.77 Aligned_cols=23 Identities=26% Similarity=0.190 Sum_probs=12.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 007684 231 ALFGFCKLGNTDKAYEVDAHMGE 253 (593)
Q Consensus 231 li~~~~~~g~~~~A~~l~~~m~~ 253 (593)
+--|+.+.|++++|.+..+.+.+
T Consensus 83 LAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 83 LTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh
Confidence 33455555555555555555553
No 250
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=43.85 E-value=1.3e+02 Score=27.59 Aligned_cols=90 Identities=8% Similarity=-0.021 Sum_probs=58.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh--CCCCC----CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007684 196 VARLAVAKEDPEMAFDLVKQMKS--FGIPP----KLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKL 269 (593)
Q Consensus 196 li~~~~~~g~~~~A~~l~~~m~~--~g~~p----~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~ 269 (593)
-++.+....++|+|.+++++.++ .++.+ ....-...|..-.....-.-+..+.+++.. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 35677888999999999888764 23322 112223334444444444455556666633 4566677778888
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 007684 270 SVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 270 ~~~~g~~~~a~~~l~~m~~ 288 (593)
+.+-|+.++|.++|-+.+.
T Consensus 101 L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHH
Confidence 8889999999988887765
No 251
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.12 E-value=1.1e+02 Score=30.85 Aligned_cols=85 Identities=12% Similarity=0.044 Sum_probs=60.4
Q ss_pred ccccHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh---CCCCCCcc----cHHHHHHHHHh
Q 007684 167 SNLGLKRGFEIFQQMITDKV--DPNEATFTSVARLAVAKEDPEMAFDLVKQMKS---FGIPPKLR----SYGPALFGFCK 237 (593)
Q Consensus 167 ~~g~~~~a~~l~~~M~~~g~--~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~---~g~~p~~~----ty~~li~~~~~ 237 (593)
+.|+++.|.+.|.++...-. .--...+-.+|+.+...+++..|...+++... .+-.|+.. .|.. ..+..
T Consensus 143 ~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~g--l~~l~ 220 (429)
T 4b4t_R 143 QIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYG--IHCLA 220 (429)
T ss_dssp HHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHH--HGGGG
T ss_pred HcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHH--HHHHH
Confidence 35799999999999987432 33345788899999999999999999999864 23223221 2222 22335
Q ss_pred cCChhHHHHHHHHHHh
Q 007684 238 LGNTDKAYEVDAHMGE 253 (593)
Q Consensus 238 ~g~~~~A~~l~~~m~~ 253 (593)
.+++.+|-..|-+...
T Consensus 221 ~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 221 VRNFKEAAKLLVDSLA 236 (429)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred hChHHHHHHHHHHHhc
Confidence 7889999888888764
No 252
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=40.92 E-value=5.7 Score=36.11 Aligned_cols=44 Identities=0% Similarity=-0.088 Sum_probs=22.6
Q ss_pred HHHHHHHHHhCCChhhHHhhcCCccccch---HHHHHHHhcCCCccc
Q 007684 38 RSLLCWHMHSFTKPITDIKQNRFSADLTT---GLCTLAFSKKSTVNE 81 (593)
Q Consensus 38 ~~ll~~~~~~~~~~~~~m~~~g~~~~~~~---~~li~~~~~~g~~~~ 81 (593)
.+|..+....-.++++.+.+.|..++... ...+...+..|+.+-
T Consensus 11 ~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 57 (240)
T 3eu9_A 11 WDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDL 57 (240)
T ss_dssp CCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred hHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHH
Confidence 34444444334455666777776665443 334444455555443
No 253
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=40.76 E-value=41 Score=27.98 Aligned_cols=22 Identities=23% Similarity=0.144 Sum_probs=12.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHH
Q 007684 231 ALFGFCKLGNTDKAYEVDAHMG 252 (593)
Q Consensus 231 li~~~~~~g~~~~A~~l~~~m~ 252 (593)
+--|+.+.|+.++|.+..+.+.
T Consensus 84 LAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 84 LTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHH
Confidence 4445555555555555555555
No 254
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=40.27 E-value=85 Score=25.77 Aligned_cols=66 Identities=9% Similarity=0.043 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCC
Q 007684 192 TFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGN--TDKAYEVDAHMGESGVVP 258 (593)
Q Consensus 192 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p 258 (593)
..+.++.-|...|+.++|.+.++++..... -...++..+..++=+.++ .+.+..++..+...|+-+
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 345677777778888888888887753111 011233333344433332 244566666666655543
No 255
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=40.25 E-value=88 Score=24.57 Aligned_cols=78 Identities=14% Similarity=-0.020 Sum_probs=49.3
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHH
Q 007684 170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDA 249 (593)
Q Consensus 170 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~ 249 (593)
..++|.-|-+-+...+. .+..--+-+..+...|++++|..+.+.+. .||+..|-++- -.+.|-.+++...+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALC--EWHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHH--HHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHH
Confidence 56777777777776652 33333333445667788888887766443 47777665442 336777777777777
Q ss_pred HHHhCC
Q 007684 250 HMGESG 255 (593)
Q Consensus 250 ~m~~~g 255 (593)
++..+|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 776554
No 256
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=39.64 E-value=1.5e+02 Score=25.13 Aligned_cols=100 Identities=6% Similarity=-0.097 Sum_probs=57.8
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHH
Q 007684 170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDA 249 (593)
Q Consensus 170 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~ 249 (593)
..+.+..+++.+.+.|.--|..--...++...+.|. ....+-.++...||.++. -...+..+ .....+.|.++.+
T Consensus 45 ~~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g~--G~~~I~~eL~~KGI~~~~--i~~al~~~-~~d~~~~a~~l~~ 119 (159)
T 3c1d_A 45 TAEDYERVIAWCHEHGYLDDSRFVARFIASRSRKGY--GPARIRQELNQKGISREA--TEKAMREA-DIDWAALARDQAT 119 (159)
T ss_dssp CHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTTC--CHHHHHHHHHHTTCCHHH--HHHHHHHH-CCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHcCCCHHH--HHHHHHHc-CHhHHHHHHHHHH
Confidence 345677888888888876555555566776666542 356777888888884432 12222222 1123344566655
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcC
Q 007684 250 HMGESGVVPEEPELSALLKLSVDAK 274 (593)
Q Consensus 250 ~m~~~g~~p~~~t~~~Ll~~~~~~g 274 (593)
.-......++.....-++..+...|
T Consensus 120 kk~~~~~~~~~~~~~K~~~~L~rrG 144 (159)
T 3c1d_A 120 RKYGEPLPTVFSEKVKIQRFLLYRG 144 (159)
T ss_dssp HHHCSSCCCSHHHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 4332222344555677777777777
No 257
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=39.17 E-value=77 Score=27.08 Aligned_cols=54 Identities=19% Similarity=0.051 Sum_probs=26.6
Q ss_pred CChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 007684 204 EDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP 258 (593)
Q Consensus 204 g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 258 (593)
++.++|.++|+.+.+.+-.- ...|-....--.++|++++|..++......+-+|
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 45566666666664421111 2222222223335666666666666666555444
No 258
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=39.14 E-value=0.49 Score=48.83 Aligned_cols=83 Identities=12% Similarity=-0.002 Sum_probs=62.8
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL 146 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll 146 (593)
+.|-.+..+.+++.+|.+.|...- ++..|..+|.++.++|.+++-..++.-.++..-.| ..=+.|+
T Consensus 58 s~LgkAqL~~~~v~eAIdsyIkA~------------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi 123 (624)
T 3lvg_A 58 SQLAKAQLQKGMVKEAIDSYIKAD------------DPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELI 123 (624)
T ss_dssp SSHHHHTTTSSSCTTTTTSSCCCS------------CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHH
T ss_pred HHHHHHHHccCchHHHHHHHHhCC------------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHH
Confidence 788899999999999999983222 34458899999999999999999888766664333 3446799
Q ss_pred HHHHccCCCCCCCCCCC
Q 007684 147 YVCSCKCGSESSENGDR 163 (593)
Q Consensus 147 ~~~~~~~~~~~~~~~~~ 163 (593)
.+|++.+.....++.+.
T Consensus 124 ~ayAk~~rL~elEefl~ 140 (624)
T 3lvg_A 124 FALAKTNRLAELEEFIN 140 (624)
T ss_dssp HHHHTSCSSSTTTSTTS
T ss_pred HHHHhhCcHHHHHHHHc
Confidence 99999876655554443
No 259
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=38.66 E-value=55 Score=30.85 Aligned_cols=110 Identities=14% Similarity=0.154 Sum_probs=74.6
Q ss_pred cccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc----ccHHHHHHHHHhcCCh
Q 007684 166 DSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL----RSYGPALFGFCKLGNT 241 (593)
Q Consensus 166 ~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~ty~~li~~~~~~g~~ 241 (593)
.+.|.+++|++....-.+.. +-|...=..++..+|-.|+|+.|.+-++...+. .|+. .+|..+|.+
T Consensus 8 l~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~a------- 77 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKA------- 77 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHH-------
T ss_pred HhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHH-------
Confidence 34579999999999888777 778888889999999999999999998888763 2442 345444443
Q ss_pred hHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 007684 242 DKAYEVDAHMGESGVVP-----EEPELSALLKLSV--DAKKVDKVYEILHRLRT 288 (593)
Q Consensus 242 ~~A~~l~~~m~~~g~~p-----~~~t~~~Ll~~~~--~~g~~~~a~~~l~~m~~ 288 (593)
+..=++....+-.| ...-...|+.+.. ..|+.++|.++-..+.+
T Consensus 78 ---E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 78 ---AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp ---HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 22222333322222 2233455666654 46899999888777755
No 260
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=38.62 E-value=3.1e+02 Score=27.30 Aligned_cols=170 Identities=12% Similarity=0.001 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHH
Q 007684 104 EGVLRHKLDMCSKRGDVFEALRLYDDARSN-GITL---SQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQ 179 (593)
Q Consensus 104 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p---~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~ 179 (593)
+.....|...|.+.|+.++..+++...+.- +.-| ..-....||..+.... +..+.-.++..
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~---------------~~~~~~~~~~~ 83 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMD---------------AGTGIEVQLCK 83 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSC---------------CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCC---------------CcHHHHHHHHH
Confidence 345778889999999999999999876533 1111 2234556777777652 34455555555
Q ss_pred HHHh----CCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-----cccHHHHHHHHHhcCChhHHHHHHH
Q 007684 180 QMIT----DKVDP-NEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-----LRSYGPALFGFCKLGNTDKAYEVDA 249 (593)
Q Consensus 180 ~M~~----~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~ty~~li~~~~~~g~~~~A~~l~~ 249 (593)
+..+ ....- ....=.-++..|...|++.+|.+++.++.+.=-..| +..|-.-+..|...++..++...+.
T Consensus 84 ~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~ 163 (394)
T 3txn_A 84 DCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALT 163 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 5443 22100 111223688999999999999999999875211112 2467777888999999999999998
Q ss_pred HHHh--CCCCCCHHHHHHH----HHHHH-hcCCHHHHHHHHHHHHH
Q 007684 250 HMGE--SGVVPEEPELSAL----LKLSV-DAKKVDKVYEILHRLRT 288 (593)
Q Consensus 250 ~m~~--~g~~p~~~t~~~L----l~~~~-~~g~~~~a~~~l~~m~~ 288 (593)
.... ..+.++...-..+ ...+. ..+++..|...|-+.-+
T Consensus 164 ~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 164 SARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 8763 2333444332222 12234 67899999888776543
No 261
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=38.32 E-value=33 Score=32.35 Aligned_cols=192 Identities=7% Similarity=-0.018 Sum_probs=89.2
Q ss_pred CCCcccHHHHHHHHHHhCCChhhHHhhcCCccccch-HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCC--HHHH
Q 007684 31 QSNCHTYRSLLCWHMHSFTKPITDIKQNRFSADLTT-GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESP--EGVL 107 (593)
Q Consensus 31 ~pd~~~~~~ll~~~~~~~~~~~~~m~~~g~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~ 107 (593)
.+|..-+++|..+....-.++++.+.+.|..++... ...+..-+..|+.+-+..+.. .+.... ...-
T Consensus 26 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----------~ga~~~~~d~~g 95 (285)
T 3kea_A 26 KADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLF----------SGLDDSQFDDKG 95 (285)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHH----------TTCCTTCCCTTS
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH----------CCCCCCCcCCCC
Confidence 344444455555544445566677777777776655 333333444555443322221 111100 0011
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH---H-HHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHh
Q 007684 108 RHKLDMCSKRGDVFEALRLYDDARSNGITLSQH---H-YNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMIT 183 (593)
Q Consensus 108 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t-y~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~ 183 (593)
.+-+...+..|+.+-+.-+++ .|..++.. - .+.|..++..+ .. ++.+.+.+
T Consensus 96 ~t~L~~A~~~g~~~~v~~Ll~----~ga~~~~~~~~g~~t~L~~A~~~~-----------------~~----~~v~~Ll~ 150 (285)
T 3kea_A 96 NTALYYAVDSGNMQTVKLFVK----KNWRLMFYGKTGWKTSFYHAVMLN-----------------DV----SIVSYFLS 150 (285)
T ss_dssp CCHHHHHHHTTCHHHHHHHHH----HCGGGGGCSSSGGGSHHHHHHHTT-----------------CH----HHHHHHHT
T ss_pred CcHHHHHHHcCCHHHHHHHHh----cCCCCCccCCCCCCCHHHHHHHcC-----------------CH----HHHHHHHh
Confidence 123444556676655544444 34443322 1 12333344432 33 34444555
Q ss_pred CCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH
Q 007684 184 DKVDPNEA-TFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPE 262 (593)
Q Consensus 184 ~g~~p~~~-ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 262 (593)
.|..+... .-.+.+...+..|..+-+.-+++.-..... .+..-.++.+...++.|+. ++.+.+.+.|..++...
T Consensus 151 ~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~-~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 151 EIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNT-NNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSAN 225 (285)
T ss_dssp TSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCT-TCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTT
T ss_pred CCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCc-ccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCC
Confidence 55333111 223344455677887776666665433222 2233344445555566664 34444556676666554
No 262
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=38.23 E-value=1.2e+02 Score=24.87 Aligned_cols=84 Identities=10% Similarity=0.069 Sum_probs=57.1
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 007684 227 SYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAK--KVDKVYEILHRLRTLVRQVSESTFKIIEDW 304 (593)
Q Consensus 227 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g--~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~ 304 (593)
..+.+|.-|...|+.++|.+.++++....+ .......++..++-+.+ ..+.+..++..+.+.+.-+.......+...
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~~v 87 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 87 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHH
Confidence 346799999999999999999999853222 12344555666665554 246788889999887776666655556655
Q ss_pred Hhcchhh
Q 007684 305 FDSVDAA 311 (593)
Q Consensus 305 ~~~~~~~ 311 (593)
+.+..++
T Consensus 88 ~~~l~Dl 94 (129)
T 2nsz_A 88 YNEIPDI 94 (129)
T ss_dssp HHHHHHH
T ss_pred HhhChHh
Confidence 5554443
No 263
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=38.19 E-value=6.3 Score=38.94 Aligned_cols=216 Identities=13% Similarity=0.037 Sum_probs=103.2
Q ss_pred CcccHHHHHHHHHHhCCChhhHHhhcCCccccch---HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHH
Q 007684 33 NCHTYRSLLCWHMHSFTKPITDIKQNRFSADLTT---GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRH 109 (593)
Q Consensus 33 d~~~~~~ll~~~~~~~~~~~~~m~~~g~~~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (593)
|..-+++|..+....-.++++.+.+.|..++... ...+...+..|+.+-+..+. +.+...+...-..
T Consensus 17 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll----------~~g~~~~~~~g~t 86 (364)
T 3ljn_A 17 DDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLA----------SVGEVHSLWHGQK 86 (364)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHH----------HHCCCCCCBTTBC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHH----------HCCCCccccCCCC
Confidence 4444455555555445567778888888777654 33333444455544333222 1111111111123
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCCH--------------------HHHHHHHHHHHccCCCCCCCCCCCcccccc
Q 007684 110 KLDMCSKRGDVFEALRLYDDARSNGITLSQ--------------------HHYNVLLYVCSCKCGSESSENGDRENDSNL 169 (593)
Q Consensus 110 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--------------------~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g 169 (593)
.+...+..|+.+-+..+++.....|..++. .-.+.|..++..+. .
T Consensus 87 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~---------------~ 151 (364)
T 3ljn_A 87 PIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGP---------------E 151 (364)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCG---------------G
T ss_pred HHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCC---------------c
Confidence 445566778888888888776655654433 11233444444320 0
Q ss_pred cHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCCC---cccHHHHHHHHHhcCChh
Q 007684 170 GLKRGFEIFQQMITDKVDPNEA---TFTSVARLAVAKEDPEMAFDLVKQMKS-FGIPPK---LRSYGPALFGFCKLGNTD 242 (593)
Q Consensus 170 ~~~~a~~l~~~M~~~g~~p~~~---ty~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~---~~ty~~li~~~~~~g~~~ 242 (593)
. .++++.+.+.|..++.. -.+. +...+..|+.+.+..+++.-.. .++.++ ..-.+ .+...+..|+.+
T Consensus 152 ~----~~~v~~Ll~~ga~~~~~d~~g~t~-L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t-~L~~A~~~g~~~ 225 (364)
T 3ljn_A 152 Y----LEMIKILVQLGASPTAKDKADETP-LMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNS-HLHWAILINWED 225 (364)
T ss_dssp G----HHHHHHHHHHTCCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCC-TTHHHHTTTCHH
T ss_pred h----HHHHHHHHHcCCCCcccCCCCCCH-HHHHHHcCCHHHHHHHHhcccccccccccccCCCCCc-HHHHHHHcCCHH
Confidence 2 33444444445544332 2333 4445567887766665554222 111122 22333 344556777765
Q ss_pred HHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHH
Q 007684 243 KAYEVDAHMGESGVVPEEPE---LSALLKLSVDAKKVDKVYEILH 284 (593)
Q Consensus 243 ~A~~l~~~m~~~g~~p~~~t---~~~Ll~~~~~~g~~~~a~~~l~ 284 (593)
-+.- +.+.|..++... .+.| ...+..|..+-+..+++
T Consensus 226 ~v~~----Ll~~gad~~~~d~~g~tpL-~~A~~~g~~~~v~~Ll~ 265 (364)
T 3ljn_A 226 VAMR----FVEMGIDVNMEDNEHTVPL-YLSVRAAMVLLTKELLQ 265 (364)
T ss_dssp HHHH----HHTTTCCTTCCCTTSCCHH-HHHHHTCCHHHHHHHHH
T ss_pred HHHH----HHHcCCCCCCCCCCCCCHH-HHHHHhChHHHHHHHHH
Confidence 4444 444565544321 2223 33345566655544444
No 264
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=38.15 E-value=3e+02 Score=27.00 Aligned_cols=85 Identities=9% Similarity=0.069 Sum_probs=59.1
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 007684 227 SYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAK--KVDKVYEILHRLRTLVRQVSESTFKIIEDW 304 (593)
Q Consensus 227 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g--~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~ 304 (593)
..+.+|.-|...|+.++|...++++....+. .+....++..++-+.+ ..+.+..++..+.+.++-.......-+...
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~v 297 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 297 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 4588999999999999999999999642222 2334555666665544 346788889999888777666666666666
Q ss_pred Hhcchhhh
Q 007684 305 FDSVDAAE 312 (593)
Q Consensus 305 ~~~~~~~~ 312 (593)
+....++.
T Consensus 298 l~~ldDl~ 305 (358)
T 3eiq_C 298 YNEIPDIN 305 (358)
T ss_dssp HHHHHHHH
T ss_pred HHhccHhh
Confidence 65555443
No 265
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.65 E-value=3.7e+02 Score=27.08 Aligned_cols=176 Identities=11% Similarity=0.090 Sum_probs=101.6
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHH
Q 007684 101 ESPEGVLRHKLDMCSKRGDVFEALRLYDDARSN-GITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQ 179 (593)
Q Consensus 101 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~ 179 (593)
.....+...++..|.+.|+++...+++.-+... |..+ .....++..|..-- +. ....+.+.-..+.+
T Consensus 53 ~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l---------~~-~~~~d~~~~~~~i~ 120 (445)
T 4b4t_P 53 ASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYL---------KS-SKSLDLNTRISVIE 120 (445)
T ss_dssp TTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHH---------HH-HCTTHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHH---------hc-CCchhHHHHHHHHH
Confidence 334556888999999999999998888776643 4332 22344554332210 00 00011111122222
Q ss_pred HHH--hCC-CCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHh--CCCCCC---cccHHHHHHHHHhcCChhHHHHHH
Q 007684 180 QMI--TDK-VDPN---EATFTSVARLAVAKEDPEMAFDLVKQMKS--FGIPPK---LRSYGPALFGFCKLGNTDKAYEVD 248 (593)
Q Consensus 180 ~M~--~~g-~~p~---~~ty~~li~~~~~~g~~~~A~~l~~~m~~--~g~~p~---~~ty~~li~~~~~~g~~~~A~~l~ 248 (593)
... ..| +-.. ......|...+-..|++.+|.+++.++.. .|.... +..|...+..|...+++.+|..++
T Consensus 121 ~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~ 200 (445)
T 4b4t_P 121 TIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLS 200 (445)
T ss_dssp CCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 111 111 1111 12234567778888888888888888753 333222 356777788888888888888888
Q ss_pred HHHHh----CCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 249 AHMGE----SGVVPEE--PELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 249 ~~m~~----~g~~p~~--~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
..... ....|+. .-+...+..+...+++.+|...|..+-+
T Consensus 201 ~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 201 RKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 87642 2222322 2356667777778888888877776644
No 266
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=34.22 E-value=1.1e+02 Score=24.07 Aligned_cols=79 Identities=15% Similarity=0.021 Sum_probs=53.1
Q ss_pred ChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007684 205 DPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILH 284 (593)
Q Consensus 205 ~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~ 284 (593)
.-++|..+-+-+...+- ...+--+=+..+...|++++|..+.+.+ ..||...|.+|-. .+.|..+++..-+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 45666666666555432 1111122235667899999999888765 3799999888754 37888899988888
Q ss_pred HHHHccC
Q 007684 285 RLRTLVR 291 (593)
Q Consensus 285 ~m~~~~~ 291 (593)
++..+|.
T Consensus 94 ~la~sg~ 100 (116)
T 2p58_C 94 RLARSQD 100 (116)
T ss_dssp HHTTCCC
T ss_pred HHHhCCC
Confidence 8876543
No 267
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=34.19 E-value=70 Score=27.22 Aligned_cols=53 Identities=9% Similarity=-0.030 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCH
Q 007684 243 KAYEVDAHMGESGVVPEEPE-LSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295 (593)
Q Consensus 243 ~A~~l~~~m~~~g~~p~~~t-~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~ 295 (593)
++.++|..|...|+--.... |......+...|++.+|.++|+.-.+.+-+|-.
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 36666666666665444333 566666666667777777777766666666643
No 268
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=33.72 E-value=1.5e+02 Score=26.45 Aligned_cols=53 Identities=19% Similarity=-0.061 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHhCCCCCCc-ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 007684 206 PEMAFDLVKQMKSFGIPPKL-RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP 258 (593)
Q Consensus 206 ~~~A~~l~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 258 (593)
...+.++|..|...||--.. .-|-.....+-..|++++|.++|+.=.+.+-+|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44555555555555543332 234444444455555555555555555544444
No 269
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=32.68 E-value=41 Score=31.03 Aligned_cols=117 Identities=16% Similarity=0.118 Sum_probs=61.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHh
Q 007684 108 RHKLDMCSKRGDVFEALRLYDDARSNGITLSQH----HYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMIT 183 (593)
Q Consensus 108 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~ 183 (593)
+..+...++.|+++....++ +.|..++.. -++.|..++..+ +. ++++.+.+
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~g-----------------~~----~~v~~Ll~ 60 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMS-----------------RE----DIVELLLR 60 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTTCCCHHHHHHHTT-----------------CH----HHHHHHHH
T ss_pred chHHHHHHHcCCHHHHHHHH----HcCCCcccccCCCCCcHHHHHHHcC-----------------CH----HHHHHHHH
Confidence 45566778888876555544 455444322 234444455553 43 45555566
Q ss_pred CCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcc---cHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 007684 184 DKVDPNE---ATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLR---SYGPALFGFCKLGNTDKAYEVDAHMGESGVV 257 (593)
Q Consensus 184 ~g~~p~~---~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 257 (593)
.|..++. ...+ .+...+..|+.+.+ +.+.+.|..++.. .++ .+...+..|+.+-+.. +.+.|..
T Consensus 61 ~g~~~~~~~~~g~t-~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~~----Ll~~g~~ 130 (285)
T 1wdy_A 61 HGADPVLRKKNGAT-PFLLAAIAGSVKLL----KLFLSKGADVNECDFYGFT-AFMEAAVYGKVKALKF----LYKRGAN 130 (285)
T ss_dssp TTCCTTCCCTTCCC-HHHHHHHHTCHHHH----HHHHHTTCCTTCBCTTCCB-HHHHHHHTTCHHHHHH----HHHTTCC
T ss_pred cCCCCcccCCCCCC-HHHHHHHcCCHHHH----HHHHHcCCCCCccCcccCC-HHHHHHHhCCHHHHHH----HHHhCCC
Confidence 6665543 2223 33444556776544 4444556655532 233 4555567777654444 4444544
Q ss_pred CC
Q 007684 258 PE 259 (593)
Q Consensus 258 p~ 259 (593)
++
T Consensus 131 ~~ 132 (285)
T 1wdy_A 131 VN 132 (285)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 270
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=32.38 E-value=78 Score=26.91 Aligned_cols=68 Identities=9% Similarity=0.042 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCCH
Q 007684 192 TFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGN--TDKAYEVDAHMGESGVVPEE 260 (593)
Q Consensus 192 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~ 260 (593)
..+.+|.-|...|+.++|.+.++++..... -...++..+..++=+.++ .+.+..++..+...|+-+..
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 456778888888888888888888863111 012233434444444322 34566777777666654433
No 271
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=31.99 E-value=79 Score=27.28 Aligned_cols=51 Identities=6% Similarity=-0.028 Sum_probs=23.4
Q ss_pred HHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHccCCCC
Q 007684 244 AYEVDAHMGESGVVPEEPE-LSALLKLSVDAKKVDKVYEILHRLRTLVRQVS 294 (593)
Q Consensus 244 A~~l~~~m~~~g~~p~~~t-~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~ 294 (593)
+.++|..|...|+--.... |......+...|++.+|.++|+.-.+.+-+|.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 4444555544444333222 44444444445555555555555544444444
No 272
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=31.64 E-value=45 Score=29.01 Aligned_cols=154 Identities=14% Similarity=0.030 Sum_probs=72.7
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCH
Q 007684 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNE 190 (593)
Q Consensus 111 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~ 190 (593)
+...+..|+.+....++..-...--..|..-++.|..++..+ + .++++.+.+.|..++.
T Consensus 9 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~-----------------~----~~~v~~Ll~~g~~~~~ 67 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNN-----------------D----IEIAKALIDRGADINL 67 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHT-----------------C----HHHHHHHHHTTCCTTC
T ss_pred HHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcC-----------------C----HHHHHHHHHcCCCCCC
Confidence 344566778777776664321000012233344455555553 4 3455555566655543
Q ss_pred H---HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc---ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC---CHH
Q 007684 191 A---TFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL---RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP---EEP 261 (593)
Q Consensus 191 ~---ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~ 261 (593)
. ..+. +...+..|+.+.+..+++. .+..++. .-.+ .+...++.|+.+.+..+++.-. ..+ |..
T Consensus 68 ~~~~g~t~-l~~A~~~~~~~~~~~Ll~~---~~~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g~---~~~~~~~~~ 139 (201)
T 3hra_A 68 QNSISDSP-YLYAGAQGRTEILAYMLKH---ATPDLNKHNRYGGN-ALIPAAEKGHIDNVKLLLEDGR---EDIDFQNDF 139 (201)
T ss_dssp CCTTSCCH-HHHHHHTTCHHHHHHHHHH---SCCCTTCCCTTSCC-SHHHHHHTTCHHHHHHHHHHCC---CCTTCCCTT
T ss_pred CCCCCCCH-HHHHHHcCCHHHHHHHHhc---cCcccccccCCCCc-HHHHHHHcCCHHHHHHHHHcCC---CCcCCCCCC
Confidence 2 2233 3445566777766665543 3322222 2223 4455667777766655555420 222 222
Q ss_pred HHHHHHHHHHhcCC-HHHHHHHHHHHHHccCCCC
Q 007684 262 ELSALLKLSVDAKK-VDKVYEILHRLRTLVRQVS 294 (593)
Q Consensus 262 t~~~Ll~~~~~~g~-~~~a~~~l~~m~~~~~~~~ 294 (593)
-.+.|..+. ..|+ ...-.++++.+.+.|..++
T Consensus 140 g~t~L~~A~-~~~~~~~~~~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 140 GYTALIEAV-GLREGNQLYQDIVKLLMENGADQS 172 (201)
T ss_dssp SCCHHHHHH-HSSCCSHHHHHHHHHHHHTTCCTT
T ss_pred CCCHHHHHH-HhccchhhHHHHHHHHHHCCCCCC
Confidence 233343333 3333 2223455566666665554
No 273
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=31.23 E-value=31 Score=31.95 Aligned_cols=48 Identities=8% Similarity=-0.011 Sum_probs=22.8
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCccc--HHHHHHHHHhcCChhHHHHHH
Q 007684 201 VAKEDPEMAFDLVKQMKSFGIPPKLRS--YGPALFGFCKLGNTDKAYEVD 248 (593)
Q Consensus 201 ~~~g~~~~A~~l~~~m~~~g~~p~~~t--y~~li~~~~~~g~~~~A~~l~ 248 (593)
+..+..+...++++.+.+.|..++... -.+.+...++.|+.+-+..++
T Consensus 190 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 239 (285)
T 1wdy_A 190 LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 239 (285)
T ss_dssp HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 334454444555666666665554321 122344445555554444333
No 274
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=31.05 E-value=1.1e+02 Score=25.97 Aligned_cols=85 Identities=9% Similarity=0.072 Sum_probs=57.3
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 007684 227 SYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAK--KVDKVYEILHRLRTLVRQVSESTFKIIEDW 304 (593)
Q Consensus 227 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g--~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~ 304 (593)
..+.+|.-|...|+.++|.+.++++....+ .......++..++-+.+ ..+.+..++..+.+.++-+......-+...
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~v 89 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 89 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHH
Confidence 456799999999999999999999953211 12344555666665543 256778888888887776666555556665
Q ss_pred Hhcchhhh
Q 007684 305 FDSVDAAE 312 (593)
Q Consensus 305 ~~~~~~~~ 312 (593)
+.+..++.
T Consensus 90 l~~ldDl~ 97 (152)
T 2ion_A 90 YNEIPDIN 97 (152)
T ss_dssp HHHHHHHH
T ss_pred HHhChHhc
Confidence 55554433
No 275
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=30.12 E-value=53 Score=27.49 Aligned_cols=15 Identities=33% Similarity=0.381 Sum_probs=6.5
Q ss_pred HHHcCCCHHHHHHHH
Q 007684 113 MCSKRGDVFEALRLY 127 (593)
Q Consensus 113 ~~~~~g~~~~A~~l~ 127 (593)
..++.|+++....++
T Consensus 14 ~A~~~g~~~~v~~ll 28 (165)
T 3twr_A 14 EAAKAGDVETVKKLC 28 (165)
T ss_dssp HHHHHTCHHHHHHHC
T ss_pred HHHHhCCHHHHHHHH
Confidence 333444544444443
No 276
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=29.72 E-value=1e+02 Score=24.15 Aligned_cols=79 Identities=13% Similarity=-0.017 Sum_probs=53.2
Q ss_pred ChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007684 205 DPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILH 284 (593)
Q Consensus 205 ~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~ 284 (593)
.-++|..+-+-+...+- ...+--+=+..+...|++++|..+.+.+ ..||...|.+|-. .+.|..+++..-+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 35666666665555432 1111122235667899999999887765 3799999888754 47899999998888
Q ss_pred HHHHccC
Q 007684 285 RLRTLVR 291 (593)
Q Consensus 285 ~m~~~~~ 291 (593)
++..+|.
T Consensus 93 ~la~sg~ 99 (115)
T 2uwj_G 93 GLGGSSD 99 (115)
T ss_dssp HHHTCSS
T ss_pred HHHhCCC
Confidence 8877544
No 277
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=28.79 E-value=3.4e+02 Score=31.33 Aligned_cols=115 Identities=14% Similarity=-0.025 Sum_probs=75.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---------------------C--cccHHHHHHHHHhcCChhHHH
Q 007684 189 NEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPP---------------------K--LRSYGPALFGFCKLGNTDKAY 245 (593)
Q Consensus 189 ~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---------------------~--~~ty~~li~~~~~~g~~~~A~ 245 (593)
+...-=.+.+++...|++++|.+.|++... |+.. + ..=|..++..|-+.+..+.|.
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi 919 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDAL 919 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHH
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHH
Confidence 444434456677889999999999987521 1111 0 012677888888889888888
Q ss_pred HHHHHHHhC-CCC-CCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHh
Q 007684 246 EVDAHMGES-GVV-PEEP--ELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFD 306 (593)
Q Consensus 246 ~l~~~m~~~-g~~-p~~~--t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~ 306 (593)
++-....+. +-. ++.. .|..+++++...|++++|+..+-.+.....+ ......++...|
T Consensus 920 ~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~~lc 982 (1139)
T 4fhn_B 920 EFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVNQLT 982 (1139)
T ss_dssp HHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHHHHH
Confidence 776655532 211 1112 4888999999999999999999888654333 445554544444
No 278
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=28.40 E-value=1.4e+02 Score=24.79 Aligned_cols=144 Identities=13% Similarity=0.104 Sum_probs=72.8
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCC
Q 007684 111 LDMCSKRGDVFEALRLYDDARSNGIT---LSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVD 187 (593)
Q Consensus 111 i~~~~~~g~~~~A~~l~~~m~~~g~~---p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~ 187 (593)
+...+..|+++....+++. |.. .|..-++.|..++..+ +. ++++.+.+.|..
T Consensus 7 L~~A~~~g~~~~v~~ll~~----~~~~~~~~~~g~t~L~~A~~~~-----------------~~----~~v~~Ll~~g~~ 61 (167)
T 3v31_A 7 VHQLAAQGEMLYLATRIEQ----ENVINHTDEEGFTPLMWAAAHG-----------------QI----AVVEFLLQNGAD 61 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHH----SSCTTCCCTTSCCHHHHHHHTT-----------------CH----HHHHHHHHTTCC
T ss_pred HHHHHHCCCHHHHHHHHHc----CCCcCCCCCCCCCHHHHHHHCC-----------------CH----HHHHHHHHcCCC
Confidence 4556677887777666654 322 2333344455555553 43 444555555655
Q ss_pred CCHHHH--HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcc---cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH
Q 007684 188 PNEATF--TSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLR---SYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPE 262 (593)
Q Consensus 188 p~~~ty--~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 262 (593)
++.... .+.+...+..|+.+.+.-+++ .|..++.. -++ .+...+..|+.+-+..++ +.|..++...
T Consensus 62 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~ 132 (167)
T 3v31_A 62 PQLLGKGRESALSLACSKGYTDIVKMLLD----CGVDVNEYDWNGGT-PLLYAVHGNHVKCVKMLL----ESGADPTIET 132 (167)
T ss_dssp TTCCCTTCCCHHHHHHHHTCHHHHHHHHH----HTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHH----HTTCCTTCCC
T ss_pred CCCcCCCCCcHHHHHHHcCCHHHHHHHHH----CCCCCCcCCCCCCC-HHHHHHHcCCHHHHHHHH----HcCCCCCCcC
Confidence 442211 123444556677665544443 45444432 234 444555667775554444 4455443221
Q ss_pred --HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 263 --LSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 263 --~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
-.+-+...+..|..+-+..+++...+
T Consensus 133 ~~g~t~l~~A~~~~~~~~~~~L~~~~~~ 160 (167)
T 3v31_A 133 DSGYNSMDLAVALGYRSVQQVIESHLLK 160 (167)
T ss_dssp TTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCcHHHHHHHHHHHHH
Confidence 12234444566777666666665544
No 279
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=28.10 E-value=1.3e+02 Score=22.03 Aligned_cols=61 Identities=13% Similarity=0.215 Sum_probs=34.4
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhh
Q 007684 250 HMGESGVVPEEPELSALLKLSVDAK-KVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAA 311 (593)
Q Consensus 250 ~m~~~g~~p~~~t~~~Ll~~~~~~g-~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~ 311 (593)
.|.+.|++.+..- ..++..+...+ ..-.+.++.+.+.+.+..++..|..-.++.+...+.+
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 3455666665543 33445554443 3445566666666666566666666666666655543
No 280
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=27.97 E-value=2.8e+02 Score=28.15 Aligned_cols=123 Identities=11% Similarity=0.010 Sum_probs=69.7
Q ss_pred cHHHHHHHHHHHHh--------CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-C---CCcccHHHHHHHHHh
Q 007684 170 GLKRGFEIFQQMIT--------DKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGI-P---PKLRSYGPALFGFCK 237 (593)
Q Consensus 170 ~~~~a~~l~~~M~~--------~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~-~---p~~~ty~~li~~~~~ 237 (593)
..++...+++.... .++..+......++.. ..|+..++..+++.+..... . ....+-..+-.+..+
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhh
Confidence 35566677766654 3455677777777776 57999999999998865322 1 122333322222211
Q ss_pred cC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcch
Q 007684 238 LG-NTDKAYEVDAHMGESGVVPEEPELSALLKLS---VDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVD 309 (593)
Q Consensus 238 ~g-~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~---~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~ 309 (593)
.. ..+ +-....| .++.++ .+.++.+.|+.++.+|.+.|..|....-.++..+....|
T Consensus 244 ~~~~~d--------------k~gd~~y-d~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig 304 (447)
T 3pvs_A 244 RSARFD--------------NKGDRFY-DLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVG 304 (447)
T ss_dssp CCCC-----------------CCHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hhhccC--------------CccchHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence 10 000 0111222 233333 345688888888888888887777666666666665444
No 281
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=27.91 E-value=3.3e+02 Score=24.57 Aligned_cols=103 Identities=14% Similarity=0.116 Sum_probs=50.8
Q ss_pred HcCCCHHH---HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCC---CcccccccHHHHHHHHHHHHhCCCCC
Q 007684 115 SKRGDVFE---ALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGD---RENDSNLGLKRGFEIFQQMITDKVDP 188 (593)
Q Consensus 115 ~~~g~~~~---A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~---~~~~~~g~~~~a~~l~~~M~~~g~~p 188 (593)
-+.|+..+ -..+++.+...++.-.... -..+..|.--..+..++.+- +.-...--++.|+.+++.+...--.+
T Consensus 27 FR~~r~~dFrq~rdi~eall~~~l~~~~~~-~k~iri~QfLsRI~eG~~LD~~Fd~~~~lTPLESAl~v~~~I~~e~~l~ 105 (235)
T 3bu8_A 27 FRGSRYGDFRQIRDIMQALLVRPLGKEHTV-SRLLRVMQCLSRIEEGENLDCSFDMEAELTPLESAINVLEMIKTEFTLT 105 (235)
T ss_dssp HHTTCHHHHHHHHHHHHHHTTSCCCCCHHH-HHHHHHHHHHHHHHTTTCTTEECSSSTTCCHHHHHHHHHHHHHHHTTCC
T ss_pred HHcccHHHHHHHHHHHHHHHhCcccccccc-hhHHHHHHHHHHHHcCCCCCcccCCCCCCChHHHHHHHHHHHHHhhcCc
Confidence 34455444 4444555554666555443 33444332211122222221 11122345889999999988754222
Q ss_pred CHH--HHH-----HHHHHHHhcCChHHHHHHHHHHHh
Q 007684 189 NEA--TFT-----SVARLAVAKEDPEMAFDLVKQMKS 218 (593)
Q Consensus 189 ~~~--ty~-----~li~~~~~~g~~~~A~~l~~~m~~ 218 (593)
+.. ... ..+..|.+.|.+++|.+++++...
T Consensus 106 ~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 106 EAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 221 111 223356677777777777776654
No 282
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=27.60 E-value=35 Score=30.55 Aligned_cols=119 Identities=18% Similarity=0.162 Sum_probs=62.1
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCC
Q 007684 110 KLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPN 189 (593)
Q Consensus 110 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~ 189 (593)
.+...++.|+++....++..-...--.++..-++.|..++..+ +. ++++.+.+.|..++
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g-----------------~~----~~v~~Ll~~g~~~~ 67 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAG-----------------HT----EIVEFLLQLGVPVN 67 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHT-----------------CH----HHHHHHHHTTCCSC
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcC-----------------cH----HHHHHHHHhCCCCC
Confidence 4667778889988888876532211122333444555555553 43 44455556665543
Q ss_pred H---HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcc---cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 007684 190 E---ATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLR---SYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE 259 (593)
Q Consensus 190 ~---~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 259 (593)
. ...+.| ...+..|+.+.+ +.+.+.|..++.. -.+ .+...+..|+.+-+..++ +.|..++
T Consensus 68 ~~~~~g~t~L-~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll----~~g~~~~ 133 (231)
T 3aji_A 68 DKDDAGWSPL-HIAASAGXDEIV----KALLVKGAHVNAVNQNGCT-PLHYAASKNRHEIAVMLL----EGGANPD 133 (231)
T ss_dssp CCCTTSCCHH-HHHHHHTCHHHH----HHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHH----HTTCCTT
T ss_pred CcCCCCCCHH-HHHHHcCHHHHH----HHHHHcCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHH----HcCCCCC
Confidence 3 223333 344556776544 4444556555432 233 455556677776554444 4455443
No 283
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=27.02 E-value=98 Score=27.47 Aligned_cols=151 Identities=10% Similarity=0.026 Sum_probs=80.4
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCC
Q 007684 110 KLDMCSKRGDVFEALRLYDDARSNG----ITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDK 185 (593)
Q Consensus 110 li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g 185 (593)
.+...+..|+.+-+..+++.-.... -..|..-.+.|..++..+ +. ++++.+.+.|
T Consensus 40 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~-----------------~~----~~v~~Ll~~g 98 (232)
T 2rfa_A 40 ALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQ-----------------NV----NLVRALLARG 98 (232)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTT-----------------CH----HHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcC-----------------CH----HHHHHHHhCC
Confidence 3455566788776666665422110 011223344555555553 43 4455555666
Q ss_pred CCCCHHH---------------HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccc--HHHHHHHHHhcCChhHHHHHH
Q 007684 186 VDPNEAT---------------FTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRS--YGPALFGFCKLGNTDKAYEVD 248 (593)
Q Consensus 186 ~~p~~~t---------------y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--y~~li~~~~~~g~~~~A~~l~ 248 (593)
..++... -.+.+...+..|+.+-+..+ .+.|..++... -.+.+...+..|+.+.+..++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L----l~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~ 174 (232)
T 2rfa_A 99 ASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLL----IEHGADIRAQDSLGNTVLHILILQPNKTFACQMY 174 (232)
T ss_dssp CCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHH----HHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHH
T ss_pred CCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHH----HHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHH
Confidence 5554321 12334445566776554444 44566555321 224566677889998888888
Q ss_pred HHHHhCCCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007684 249 AHMGESGVVP---------EEPELSALLKLSVDAKKVDKVYEILHRL 286 (593)
Q Consensus 249 ~~m~~~g~~p---------~~~t~~~Ll~~~~~~g~~~~a~~~l~~m 286 (593)
+.+.+.|..+ |..-.+. +...+..|+.+-+..++++=
T Consensus 175 ~~Ll~~g~~~~~~~~~~~~~~~g~tp-l~~A~~~g~~~~v~~Ll~~g 220 (232)
T 2rfa_A 175 NLLLSYDGGDHLKSLELVPNNQGLTP-FKLAGVEGNIVMFQHLMQKR 220 (232)
T ss_dssp HHHHHTTCSCSSCCGGGCCCTTSCCH-HHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHhcCCchhhhhhhccCCCCCCCH-HHHHHHcCCHHHHHHHHhcC
Confidence 8888777543 2222233 33445667766655555544
No 284
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=27.01 E-value=11 Score=34.18 Aligned_cols=105 Identities=8% Similarity=-0.058 Sum_probs=51.6
Q ss_pred HHHHHHHhCCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccc--HHHHHHHHHhcCChhHHHHHHHHH
Q 007684 176 EIFQQMITDKVDPNEAT--FTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRS--YGPALFGFCKLGNTDKAYEVDAHM 251 (593)
Q Consensus 176 ~l~~~M~~~g~~p~~~t--y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--y~~li~~~~~~g~~~~A~~l~~~m 251 (593)
++++.+.+.|..++... -.+.+...+..|+.+ +++.+.+.|..++... -.+.+...++.|+.+-+.- +
T Consensus 125 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~----L 196 (237)
T 3b7b_A 125 DLVKLLLSKGSDINIRDNEENICLHWAAFSGCVD----IAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVL----F 196 (237)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHH----HHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH----H
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHH----HHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHH----H
Confidence 44555555665443211 112333444556655 4444445565555322 1234555566777654433 3
Q ss_pred HhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 252 GESGVVPEEPE--LSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 252 ~~~g~~p~~~t--~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
.+.|..++... =.+-+...+..|+.+.+.++.+.+.+
T Consensus 197 l~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 197 LSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44455443211 12233444566777777777777765
No 285
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=26.71 E-value=1.7e+02 Score=24.24 Aligned_cols=62 Identities=18% Similarity=0.132 Sum_probs=38.4
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhh
Q 007684 249 AHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAA 311 (593)
Q Consensus 249 ~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~ 311 (593)
+.|.+.|++++..= ..++..+...+..-.|.++++.+++.+..++..|.--.++.+...+.+
T Consensus 11 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 34556677666542 334455555555566777777777776667777776666666666543
No 286
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=25.59 E-value=2.5e+02 Score=22.30 Aligned_cols=76 Identities=20% Similarity=0.158 Sum_probs=51.8
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 007684 170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS-FGIPPKLRSYGPALFGFCKLGNTDKAYEVD 248 (593)
Q Consensus 170 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 248 (593)
.+++|+.-+++.... ++|......++..+-.+ ++.|+++.+...+ .|+ ...++..++....+.|-++.. +.+
T Consensus 3 ~~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~w 75 (119)
T 1wty_A 3 SLARAVERLKAALER--PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PFW 75 (119)
T ss_dssp CHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HHH
T ss_pred HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HHH
Confidence 466777777777544 56777777777766554 5666666666654 566 468888889888888877655 455
Q ss_pred HHHH
Q 007684 249 AHMG 252 (593)
Q Consensus 249 ~~m~ 252 (593)
..|.
T Consensus 76 ~~m~ 79 (119)
T 1wty_A 76 LEML 79 (119)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 287
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=25.12 E-value=3.4e+02 Score=24.12 Aligned_cols=76 Identities=7% Similarity=-0.007 Sum_probs=51.8
Q ss_pred hcCCCCHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHccCCCCCCCCCCCcccccccHHHH
Q 007684 98 ARRESPEGVLRHKLDMCSK--RGDVFEALRLYDDARSNGITLSQHHYN-VLLYVCSCKCGSESSENGDRENDSNLGLKRG 174 (593)
Q Consensus 98 ~~~~~~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~ty~-~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a 174 (593)
.....+......-|...-. ++...++.++|..|.+.||--....|- ..-..+... |++++|
T Consensus 71 ~rYkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~----------------g~~~~A 134 (202)
T 3esl_A 71 ETYRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENA----------------QFFLEA 134 (202)
T ss_dssp GGGTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHT----------------TCHHHH
T ss_pred ccccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHc----------------CCHHHH
Confidence 4455666654444443333 566889999999999998765544333 333344443 699999
Q ss_pred HHHHHHHHhCCCCCC
Q 007684 175 FEIFQQMITDKVDPN 189 (593)
Q Consensus 175 ~~l~~~M~~~g~~p~ 189 (593)
.++|+.=.+.+-.|-
T Consensus 135 ~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 135 KVLLELGAENNCRPY 149 (202)
T ss_dssp HHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHcCCccH
Confidence 999999999888883
No 288
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=25.03 E-value=2.6e+02 Score=24.07 Aligned_cols=27 Identities=19% Similarity=0.132 Sum_probs=19.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHccCC
Q 007684 266 LLKLSVDAKKVDKVYEILHRLRTLVRQ 292 (593)
Q Consensus 266 Ll~~~~~~g~~~~a~~~l~~m~~~~~~ 292 (593)
+-.+|.+.|+.++|+.+++.+-...+.
T Consensus 128 ia~C~~~l~~~~~Ai~~Le~Ip~k~Rt 154 (167)
T 3ffl_A 128 LAECYTVLKQDKDAIAILDGIPSRQRT 154 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCGGGCC
T ss_pred HHHHHHHHCCHHHHHHHHhcCCchhcC
Confidence 556777899999999888876544443
No 289
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=24.70 E-value=2.2e+02 Score=28.41 Aligned_cols=103 Identities=14% Similarity=0.055 Sum_probs=63.7
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC--CCCCCHHHHHH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSN--GITLSQHHYNV 144 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~ty~~ 144 (593)
.-|...|...|++.+|..++.++... .++......-..+|-..+.+|...+++.++..++...+.. .+.+++..-..
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~-~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRE-LKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-HTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHH-HhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 46788999999999999998666622 2211110111223788888999999999999999987643 33344443333
Q ss_pred HHHHHHccCCCCCCCCCCCccc-ccccHHHHHHHHHHHH
Q 007684 145 LLYVCSCKCGSESSENGDREND-SNLGLKRGFEIFQQMI 182 (593)
Q Consensus 145 ll~~~~~~~~~~~~~~~~~~~~-~~g~~~~a~~l~~~M~ 182 (593)
+ ..|... .+. ..++++.|...|-+.-
T Consensus 182 i-~~~~Gi-----------~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 182 L-DLQSGI-----------LHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp H-HHHHHH-----------HHHHTTSCHHHHHHHHHHHH
T ss_pred H-HHHhhH-----------HHHHhccCHHHHHHHHHHHH
Confidence 2 222110 001 1258899988887653
No 290
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=24.66 E-value=1.1e+02 Score=27.80 Aligned_cols=53 Identities=9% Similarity=0.063 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHccCCCC
Q 007684 242 DKAYEVDAHMGESGVVPEEPE-LSALLKLSVDAKKVDKVYEILHRLRTLVRQVS 294 (593)
Q Consensus 242 ~~A~~l~~~m~~~g~~p~~~t-~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~ 294 (593)
+.+.++|..|...|+--.... |......+...|++.+|.++|+.-.+.+-+|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 345566666665555433333 55555555666666666666666666555554
No 291
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=24.57 E-value=1.1e+02 Score=27.25 Aligned_cols=155 Identities=13% Similarity=0.063 Sum_probs=79.3
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCC-
Q 007684 110 KLDMCSKRGDVFEALRLYDDARSNGITLS---QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDK- 185 (593)
Q Consensus 110 li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g- 185 (593)
.+...++.|+.+.+..+++. .|..++ ..-++.|..++..+ +.+-+..+++.-....
T Consensus 6 ~L~~A~~~g~~~~v~~Ll~~---~g~~~~~~~~~g~t~L~~A~~~g-----------------~~~~v~~Ll~~~~~~~~ 65 (232)
T 2rfa_A 6 PLLLAAKENDVQALSKLLKF---EGCEVHQRGAMGETALHIAALYD-----------------NLEAAMVLMEAAPELVF 65 (232)
T ss_dssp HHHHHHHTTCHHHHHHHHTT---TCSCTTCCCTTSCCHHHHHHHTT-----------------CHHHHHHHHHHCGGGGG
T ss_pred HHHHHHHcCCHHHHHHHHHh---cCCCcccCCCCCCCHHHHHHHcC-----------------CHHHHHHHHHcCchhcc
Confidence 35566777887766665543 244333 33344555565553 5544444444311100
Q ss_pred ---CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcc---------------cHHHHHHHHHhcCChhHHHHH
Q 007684 186 ---VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLR---------------SYGPALFGFCKLGNTDKAYEV 247 (593)
Q Consensus 186 ---~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---------------ty~~li~~~~~~g~~~~A~~l 247 (593)
-..|..-.+.| ...+..|+.+.+..++ +.|..++.. .-.+.+...+..|+.+-+..+
T Consensus 66 ~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 140 (232)
T 2rfa_A 66 EPMTSELYEGQTAL-HIAVINQNVNLVRALL----ARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLL 140 (232)
T ss_dssp CCCCSTTTTTCCHH-HHHHHTTCHHHHHHHH----HTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHH
T ss_pred ccccccCCCCcCHH-HHHHHcCCHHHHHHHH----hCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHH
Confidence 01122223333 4445667776544444 456555542 123345555667777555444
Q ss_pred HHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHccCCC
Q 007684 248 DAHMGESGVVPEEPE--LSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293 (593)
Q Consensus 248 ~~~m~~~g~~p~~~t--~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~ 293 (593)
+ +.|..++... -.+-+...+..|+.+-+..+++.+.+.+..+
T Consensus 141 l----~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 141 I----EHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp H----HTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred H----HCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence 4 4465544221 1233445567788888777777777766544
No 292
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=24.32 E-value=61 Score=28.72 Aligned_cols=119 Identities=14% Similarity=0.066 Sum_probs=58.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCC
Q 007684 110 KLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPN 189 (593)
Q Consensus 110 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~ 189 (593)
-+...++.|+.+.+..+++.-...-...+..-.+.|..++..+ +. ++++.+.+.|..++
T Consensus 5 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~-----------------~~----~~v~~Ll~~~~~~~ 63 (228)
T 2dzn_A 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQ-----------------AH----EITSFLLSKMENVN 63 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTT-----------------CH----HHHHHHHHTCTTCC
T ss_pred HHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcC-----------------CH----HHHHHHHhcccccc
Confidence 3556677888887777766532221123333444555555553 33 45555566663322
Q ss_pred H------HHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCc---ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 007684 190 E------ATFTSVARLAVAKEDPEMAFDLVKQMKSFG--IPPKL---RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP 258 (593)
Q Consensus 190 ~------~ty~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~---~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 258 (593)
. ...+.| ...+..|+.+.+ +.+.+.| ..++. .-.+ .+...+..|+.+-+..++ +.|..+
T Consensus 64 ~~~~~~~~g~t~L-~~A~~~~~~~~~----~~Ll~~g~~~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll----~~g~~~ 133 (228)
T 2dzn_A 64 LDDYPDDSGWTPF-HIACSVGNLEVV----KSLYDRPLKPDLNKITNQGVT-CLHLAVGKKWFEVSQFLI----ENGASV 133 (228)
T ss_dssp GGGCCCTTSCCHH-HHHHHHCCHHHH----HHHHSSSSCCCTTCCCTTCCC-HHHHHHHTTCHHHHHHHH----HTTCCS
T ss_pred ccccCCCCCCCHH-HHHHHcCCHHHH----HHHHhCCCCcccccCCcCCCC-HHHHHHHcCCHhHHHHHH----HcCCCc
Confidence 2 223333 344556666544 4444455 22222 2233 444555677765544444 445544
Q ss_pred C
Q 007684 259 E 259 (593)
Q Consensus 259 ~ 259 (593)
+
T Consensus 134 ~ 134 (228)
T 2dzn_A 134 R 134 (228)
T ss_dssp C
T ss_pred c
Confidence 3
No 293
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=24.10 E-value=1.9e+02 Score=21.01 Aligned_cols=63 Identities=16% Similarity=0.019 Sum_probs=44.7
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 007684 213 VKQMKSFGIPPKLRSYGPALFGFCKLG-NTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKV 276 (593)
Q Consensus 213 ~~~m~~~g~~p~~~ty~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~ 276 (593)
.+.|++.|+..+..- -.++..+...+ ..-.|.++++.+.+.+...+..|.-..|+.+.+.|.+
T Consensus 5 ~~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 5 NTALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 345677887666543 34667776654 5667889999998877667888877777777777754
No 294
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=23.82 E-value=87 Score=30.38 Aligned_cols=146 Identities=16% Similarity=0.190 Sum_probs=75.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC
Q 007684 108 RHKLDMCSKRGDVFEALRLYDDARSNGITLSQ---HHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD 184 (593)
Q Consensus 108 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~ 184 (593)
...|...+..|+++.+..++ +.|..++. .-++.|..++..+ +. ++.+.+.+.
T Consensus 21 ~t~L~~Aa~~g~~~~v~~Ll----~~g~~~~~~d~~g~t~L~~A~~~g-----------------~~----~~v~~Ll~~ 75 (364)
T 3ljn_A 21 MEKIHVAARKGQTDEVRRLI----ETGVSPTIQNRFGCTALHLACKFG-----------------CV----DTAKYLASV 75 (364)
T ss_dssp HHHHHHHHHHTCHHHHHHHH----HTTCCTTCCCTTCCCHHHHHHHHC-----------------CH----HHHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHH----HcCCCccccCCCCCcHHHHHHHcC-----------------CH----HHHHHHHHC
Confidence 34455555668876655555 45655543 2234455555553 44 344444555
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc--------------------ccHHHHHHHHHhcC--Chh
Q 007684 185 KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL--------------------RSYGPALFGFCKLG--NTD 242 (593)
Q Consensus 185 g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--------------------~ty~~li~~~~~~g--~~~ 242 (593)
|..++...-.+.+...+..|+.+.+..+++.-...|..|+. .-.+ .+...+..| +.+
T Consensus 76 g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t-~L~~A~~~g~~~~~ 154 (364)
T 3ljn_A 76 GEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQT-ALHWCVGLGPEYLE 154 (364)
T ss_dssp CCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCC-HHHHHHHSCGGGHH
T ss_pred CCCccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCC-HHHHHHHcCCchHH
Confidence 54444422233445566778888888888775554544433 2234 444555666 555
Q ss_pred HHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHH
Q 007684 243 KAYEVDAHMGESGVVPEEPE---LSALLKLSVDAKKVDKVYEILH 284 (593)
Q Consensus 243 ~A~~l~~~m~~~g~~p~~~t---~~~Ll~~~~~~g~~~~a~~~l~ 284 (593)
-+..+++. |..++... .+.| ...+..|..+-+..+++
T Consensus 155 ~v~~Ll~~----ga~~~~~d~~g~t~L-~~A~~~g~~~~v~~Ll~ 194 (364)
T 3ljn_A 155 MIKILVQL----GASPTAKDKADETPL-MRAMEFRNREALDLMMD 194 (364)
T ss_dssp HHHHHHHH----TCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHc----CCCCcccCCCCCCHH-HHHHHcCCHHHHHHHHh
Confidence 55444443 54443221 2333 33346676655544444
No 295
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=23.62 E-value=1.1e+02 Score=26.57 Aligned_cols=56 Identities=16% Similarity=0.044 Sum_probs=24.8
Q ss_pred cHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHh-cCChHHHHHHHHHHHhCCCCCCc
Q 007684 170 GLKRGFEIFQQMITDKVDPNE---ATFTSVARLAVA-KEDPEMAFDLVKQMKSFGIPPKL 225 (593)
Q Consensus 170 ~~~~a~~l~~~M~~~g~~p~~---~ty~~li~~~~~-~g~~~~A~~l~~~m~~~g~~p~~ 225 (593)
..+.-.++.+.+.+.|..++. .-.+.|.-++.. ..+.....++.+.+.+.|..++.
T Consensus 50 ~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~ 109 (186)
T 3t8k_A 50 NDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITA 109 (186)
T ss_dssp CHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSS
T ss_pred CcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCc
Confidence 444444555555555544332 222333333222 23444445555555555555543
No 296
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=23.23 E-value=2.6e+02 Score=21.65 Aligned_cols=61 Identities=18% Similarity=0.196 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-----HHccCCCCHHHHHHHHHHH
Q 007684 243 KAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL-----RTLVRQVSESTFKIIEDWF 305 (593)
Q Consensus 243 ~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m-----~~~~~~~~~~t~~~l~~~~ 305 (593)
.|.++-++...-|+.|+......++..|...+. + +.++..+. ...+..|+..+.+.+..-+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~FEhEv 92 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSFEHEF 92 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHHHHHT
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 356666666666888888888888888877664 1 22222222 2356777777666555433
No 297
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=22.57 E-value=1.7e+02 Score=23.94 Aligned_cols=62 Identities=13% Similarity=0.159 Sum_probs=40.9
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhh
Q 007684 250 HMGESGVVPEEPELSALLKLSVDAK-KVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAE 312 (593)
Q Consensus 250 ~m~~~g~~p~~~t~~~Ll~~~~~~g-~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~ 312 (593)
.|.+.|++++..= ..++..+...+ ..-.|.++++.+++.+..++..|.--.++.+...+.+.
T Consensus 8 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 8 ELRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 3556777766543 34555555555 56678888888888777778887777777776666443
No 298
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=22.42 E-value=1.9e+02 Score=24.23 Aligned_cols=62 Identities=13% Similarity=0.137 Sum_probs=38.1
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhh
Q 007684 249 AHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAA 311 (593)
Q Consensus 249 ~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~ 311 (593)
+.+.+.|++++.. -..++..+...+..-.|.++++.+++.+..++..|.--.++.+...+.+
T Consensus 16 ~~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 3455667765443 3445555555556667777778877777677777776666667666643
No 299
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=22.06 E-value=81 Score=27.97 Aligned_cols=16 Identities=6% Similarity=-0.139 Sum_probs=8.2
Q ss_pred HHHHHHcCCCHHHHHH
Q 007684 110 KLDMCSKRGDVFEALR 125 (593)
Q Consensus 110 li~~~~~~g~~~~A~~ 125 (593)
.+...++.|+++-+.-
T Consensus 45 ~L~~A~~~~~~~~v~~ 60 (240)
T 3eu9_A 45 LLHWAAINNRIDLVKY 60 (240)
T ss_dssp HHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCHHHHHH
Confidence 3445556666544333
No 300
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=21.69 E-value=4.1e+02 Score=23.60 Aligned_cols=92 Identities=12% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHHhc---CChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChh-----HHHHHHHHHHhCCCCCCHHHHHHHH
Q 007684 196 VARLAVAK---EDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTD-----KAYEVDAHMGESGVVPEEPELSALL 267 (593)
Q Consensus 196 li~~~~~~---g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~-----~A~~l~~~m~~~g~~p~~~t~~~Ll 267 (593)
+|+++-++ .+.|.|+-.+.+|.+.| .|.-..=..++.+.-.-|..+ .|...++..+..|..--...+.-.+
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laqav 95 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEARIPLADVV 95 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 007684 268 KLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 268 ~~~~~~g~~~~a~~~l~~m~~ 288 (593)
-.++.+-+...++..++...+
T Consensus 96 iyLA~aPKSNs~y~A~~~A~~ 116 (204)
T 2r9g_A 96 VDLCLSPKSNSAYMALDAALA 116 (204)
T ss_dssp HHHHHSCCCCHHHHHHHHHHH
T ss_pred HHHHcCCccHHHHHHHHHHHH
No 301
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=21.69 E-value=1.2e+02 Score=25.74 Aligned_cols=12 Identities=8% Similarity=0.199 Sum_probs=4.9
Q ss_pred cCCCHHHHHHHH
Q 007684 116 KRGDVFEALRLY 127 (593)
Q Consensus 116 ~~g~~~~A~~l~ 127 (593)
+.|+++.+..++
T Consensus 14 ~~g~~~~v~~ll 25 (179)
T 3f6q_A 14 REGNAVAVRLWL 25 (179)
T ss_dssp HHTCHHHHHHHH
T ss_pred HcCCHHHHHHHH
Confidence 334444444333
No 302
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=21.58 E-value=2.7e+02 Score=22.94 Aligned_cols=64 Identities=9% Similarity=-0.037 Sum_probs=44.8
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 007684 212 LVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKV 276 (593)
Q Consensus 212 l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~ 276 (593)
+.+.|++.|++++. .=-.++..+...+..-.|.++++.+.+.+...+..|.-.-|+.+.+.|.+
T Consensus 9 ~~~~l~~~g~r~T~-qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 9 ALETLKETGVRITP-QRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHHHTTCCCCH-HHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 34456778886663 23346677777777788999999998877677777755566666666654
No 303
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=21.56 E-value=2.2e+02 Score=22.07 Aligned_cols=32 Identities=16% Similarity=0.159 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 007684 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKE 204 (593)
Q Consensus 173 ~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g 204 (593)
.|.++.++...-|+.|+..+..-++..|...+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 45556666666666666666666666555544
No 304
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=21.47 E-value=3.9e+02 Score=22.99 Aligned_cols=115 Identities=12% Similarity=0.076 Sum_probs=65.2
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHH
Q 007684 170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDA 249 (593)
Q Consensus 170 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~ 249 (593)
..+.+.++++.+.+.|.--|..--...++...+.|.+. ...+-.++...||.++. -...+..+......+.|..+.+
T Consensus 48 ~~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G-~~~I~~eL~~KGI~~~~--I~~al~~~~~~de~e~a~~l~~ 124 (177)
T 3e3v_A 48 HEDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKG-PKVIKLNLSKKGIDDNI--AEDALILYTDKLQVEKGVTLAE 124 (177)
T ss_dssp CHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHTTTCCHHH--HHHHHTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHccccc-HHHHHHHHHHcCCCHHH--HHHHHHhCCchhHHHHHHHHHH
Confidence 34567788888999997766655566777777655443 46677788889984432 1122221111122345666655
Q ss_pred HHHh-CCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 007684 250 HMGE-SGVVPEEPELSALLKLSVDAK-KVDKVYEILHRLR 287 (593)
Q Consensus 250 ~m~~-~g~~p~~~t~~~Ll~~~~~~g-~~~~a~~~l~~m~ 287 (593)
.-.. ..-.++.....-++..+.+.| ..+.+..+++.+.
T Consensus 125 Kk~~~~~~~~~~~~~~K~~~~L~rrGF~~~~I~~vl~~l~ 164 (177)
T 3e3v_A 125 KLANRYSHDSYRNKQNKIKQSLLTKGFSYDIIDTIIQELD 164 (177)
T ss_dssp HHHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHhhccCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHCc
Confidence 4332 121223344566777777777 4555666665553
No 305
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=20.49 E-value=3.5e+02 Score=26.05 Aligned_cols=69 Identities=14% Similarity=0.139 Sum_probs=44.1
Q ss_pred ChhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHccCCC-CHHHHHHHHHHHhcc
Q 007684 240 NTDKAYEVDAHMGESGVVPEEP--ELSALLKLSVDAKKVDKVYEILHRLRTLVRQV-SESTFKIIEDWFDSV 308 (593)
Q Consensus 240 ~~~~A~~l~~~m~~~g~~p~~~--t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~-~~~t~~~l~~~~~~~ 308 (593)
+.....++-.-+....+.|.-. ++..-+....+.+++..|..+-+++.+.+-.+ -......++..+.+.
T Consensus 185 ~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 185 NTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAEQARKIKNKADSM 256 (325)
T ss_dssp CHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHTS
T ss_pred cHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Confidence 4455566666666666665433 35666777778999999999999998855432 222445666666544
No 306
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=20.20 E-value=2e+02 Score=23.40 Aligned_cols=112 Identities=13% Similarity=0.076 Sum_probs=52.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCC
Q 007684 108 RHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVD 187 (593)
Q Consensus 108 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~ 187 (593)
+..+...++.|+++....+++.-. .+..+..-.+.|..++..+ +. ++++.+.+.|..
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~--~~~~~~~g~t~L~~A~~~~-----------------~~----~~v~~Ll~~g~~ 59 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGA--PFTTDWLGTSPLHLAAQYG-----------------HF----STTEVLLRAGVS 59 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTC--CCCCCTTCCCHHHHHHHHT-----------------CH----HHHHHHHTTTCC
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCC--CCCcCCCCCCHHHHHHHcC-----------------CH----HHHHHHHHcCCC
Confidence 344555667777777666665311 1222333334444455543 33 344455555554
Q ss_pred CCHH---HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccc--HHHHHHHHHhcCChhHHHHH
Q 007684 188 PNEA---TFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRS--YGPALFGFCKLGNTDKAYEV 247 (593)
Q Consensus 188 p~~~---ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--y~~li~~~~~~g~~~~A~~l 247 (593)
++.. -.+.| ...+..|+.+. ++.+.+.|..++... -.+.+...+..|+.+-+.-+
T Consensus 60 ~~~~~~~g~t~L-~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 119 (153)
T 1awc_B 60 RDARTKVDRTPL-HMAASEGHANI----VEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELL 119 (153)
T ss_dssp TTCCCTTCCCHH-HHHHHHTCHHH----HHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred CCCCCCCCCCHH-HHHHHcChHHH----HHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 4321 22233 33445566653 334444565554332 12244444566666544333
No 307
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=20.09 E-value=40 Score=27.46 Aligned_cols=62 Identities=11% Similarity=0.097 Sum_probs=49.8
Q ss_pred HhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 007684 73 FSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCK 152 (593)
Q Consensus 73 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~ 152 (593)
|.+.++++++.++.. .+..|.-.|...+.+++.+-|.++++...+.| +...|.++|..|-.-
T Consensus 16 ykkN~rw~qSI~L~K---------------kDkLykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdL 77 (125)
T 3qil_A 16 PRGSHMWKQSVELAK---------------KDSLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDL 77 (125)
T ss_dssp SSSCCCCSSCCCCCS---------------CCCCSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTC
T ss_pred hhccccHHHHHHHHH---------------hcccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhc
Confidence 778888888888871 12235667888899999999999999999887 668888999988765
Done!