BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007687
(593 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 71/127 (55%), Gaps = 3/127 (2%)
Query: 215 NVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTE 274
NVR ++L N++ ++S + +L L L N+LQ + N F + +LK L L +L
Sbjct: 64 NVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS 123
Query: 275 LPVGISD-LVSLQHLDLSESDISELP-GELKALVNLKCLNLEWTRNLITIPRQLISNLSR 332
LP G+ D L +L +L+L+ + + LP G L NL L+L + + L ++P + L++
Sbjct: 124 LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQ 182
Query: 333 LHVLRMF 339
L LR++
Sbjct: 183 LKDLRLY 189
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 76/146 (52%), Gaps = 10/146 (6%)
Query: 215 NVRRISLMDNQITNLSEVATCR--HLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAEL 272
+ +++ L N++++L A R L L+LN NKLQ + F+ + +L+ L ++ +L
Sbjct: 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97
Query: 273 TELPVGISD-LVSLQHLDLSESDISELPGEL-KALVNLKCLNLEWTRNLITIPRQLISNL 330
LP+G+ D LV+L L L + + LP + +L L L+L + L ++P+ + L
Sbjct: 98 QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKL 156
Query: 331 SRLHVLRMFG-----ASHNAFDGASE 351
+ L LR++ AFD +E
Sbjct: 157 TSLKELRLYNNQLKRVPEGAFDKLTE 182
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 66/126 (52%), Gaps = 3/126 (2%)
Query: 215 NVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTE 274
NVR ++L N++ ++S + +L L L N+LQ + N F + +LK L L +L
Sbjct: 64 NVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS 123
Query: 275 LPVGISD-LVSLQHLDLSESDISELP-GELKALVNLKCLNLEWTRNLITIPRQLISNLSR 332
LP G+ D L +L +L L + + LP G L NL L+L+ L ++P + L++
Sbjct: 124 LPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLD-NNQLQSLPEGVFDKLTQ 182
Query: 333 LHVLRM 338
L L +
Sbjct: 183 LKQLSL 188
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 51/101 (50%), Gaps = 3/101 (2%)
Query: 238 LLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISD-LVSLQHLDLSESDIS 296
L L+L NKLQ + N F + SL LNLS +L LP G+ D L L+ L L+ + +
Sbjct: 54 LTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ 113
Query: 297 ELP-GELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVL 336
LP G L LK L L + L ++P + L+ L +
Sbjct: 114 SLPDGVFDKLTQLKDLRL-YQNQLKSVPDGVFDRLTSLQYI 153
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 69/155 (44%), Gaps = 14/155 (9%)
Query: 215 NVRRISLMDNQITNLSEVATCRHLLTLF---LNQNKLQMIHNDFFRFMPSLKVLNLSHAE 271
+ ++ L + LS+ AT R L L L+ N+LQ + F + L L L++ +
Sbjct: 36 DTEKLDLQSTGLATLSD-ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94
Query: 272 LTELPVGISD-LVSLQHLDLSESDISELP-GELKALVNLKCLNLEWTRNLITIPRQLISN 329
L LP+G+ D L L L L + + LP G L LK L L T L +IP
Sbjct: 95 LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN-TNQLQSIPAGAFDK 153
Query: 330 LSRLHVL-----RMFGASHNAFD--GASEDSILFG 357
L+ L L ++ H AFD G + LFG
Sbjct: 154 LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFG 188
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 69/155 (44%), Gaps = 14/155 (9%)
Query: 215 NVRRISLMDNQITNLSEVATCRHLLTLF---LNQNKLQMIHNDFFRFMPSLKVLNLSHAE 271
+ ++ L + LS+ AT R L L L+ N+LQ + F + L L L++ +
Sbjct: 36 DTEKLDLQSTGLATLSD-ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94
Query: 272 LTELPVGISD-LVSLQHLDLSESDISELP-GELKALVNLKCLNLEWTRNLITIPRQLISN 329
L LP+G+ D L L L L + + LP G L LK L L T L +IP
Sbjct: 95 LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN-TNQLQSIPAGAFDK 153
Query: 330 LSRLHVL-----RMFGASHNAFD--GASEDSILFG 357
L+ L L ++ H AFD G + LFG
Sbjct: 154 LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFG 188
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 193 KENFLVYAGVGLTEAPEVKGWENVRRISLMDNQIT--NLSEVATCRHLLTLFLNQNKLQM 250
K N+L + LT P+ E + + L N+I L ++ L L L N+++M
Sbjct: 173 KLNYLRISEAKLTGIPK-DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM 231
Query: 251 IHNDFFRFMPSLKVLNLSHAELTELPVGISDLVSLQHLDLSESDISEL 298
I N F+P+L+ L+L + +L+ +P G+ DL LQ + L ++I+++
Sbjct: 232 IENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKV 279
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 219 ISLMDNQITNL--SEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELP 276
+ L +N I+ L + +HL L L NK+ IH F + L+ L +S L E+P
Sbjct: 59 LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIP 118
Query: 277 VGISDLVSLQHLDLSESDISELP-GELKALVNLKCLNL 313
+ SL L + ++ I ++P G L N+ C+ +
Sbjct: 119 PNLPS--SLVELRIHDNRIRKVPKGVFSGLRNMNCIEM 154
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 232 VATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISD-LVSLQHLDL 290
+ T +L L++NQ + + F + L LNL+ +LT LPVG+ D L L HL L
Sbjct: 38 IPTTTQVLHLYINQ--ITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLAL 95
Query: 291 SESDISELP----GELKALVNLKCLNLEW 315
+ + +P LK+L ++ N W
Sbjct: 96 HINQLKSIPMGVFDNLKSLTHIYLFNNPW 124
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 225 QITNLSEVATCRHLLT-LFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISDLV 283
QI N+S LT L+LN N L + + + + +L+VL+LSH LT LP +
Sbjct: 235 QIFNISANIFKYDFLTRLYLNGNSLTELPAEI-KNLSNLRVLDLSHNRLTSLPAELGSCF 293
Query: 284 SLQHLDLSESDISELPGELKALVNLKCLNLE 314
L++ ++ ++ LP E L NL+ L +E
Sbjct: 294 QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVE 324
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 264 VLNLSHAELTELPVGISDLVSLQHLDLSESDISELPGELKALVNLKCLNLEWTRNLITIP 323
L+LS+ ++ + I L L L+ + ++ELP E+K L NL+ L+L R L ++P
Sbjct: 228 ALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLP 286
Query: 324 RQLIS 328
+L S
Sbjct: 287 AELGS 291
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 209 EVKGWENVRRISLMDNQITNLS--EVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLN 266
E+ ++++ I L +N+I+ LS + LLTL L+ N+L+ I F + SL++L+
Sbjct: 49 ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS 108
Query: 267 LSHAELTELPVG-ISDLVSLQHLDLSESDI 295
L +++ +P G +DL +L HL + + +
Sbjct: 109 LHGNDISVVPEGAFNDLSALSHLAIGANPL 138
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 218 RISLMDNQITNLSE--VATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTEL 275
++SL NQI +L + L L+L++NKLQ + N F + LK L L +L +
Sbjct: 56 KLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSV 115
Query: 276 PVGISD-LVSLQHL 288
P GI D L SLQ +
Sbjct: 116 PDGIFDRLTSLQKI 129
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 7/134 (5%)
Query: 203 GLTEAPEVKGWENVRRISLMDNQITNLSE--VATCRHLLTLFLNQNKLQMIHNDFFRFMP 260
GLT P + R+ L N++ +L L L L+QN++Q + + F +
Sbjct: 18 GLTSVPTGIP-SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT 76
Query: 261 SLKVLNLSHAELTELPVGISD-LVSLQHLDLSESDISELP-GELKALVNLKCLNLEWTRN 318
L +L L +L LP G+ D L L+ L L + + +P G L +L+ + L
Sbjct: 77 KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136
Query: 319 LITIPRQLISNLSR 332
+ PR I LSR
Sbjct: 137 DCSCPR--IDYLSR 148
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 78/140 (55%), Gaps = 13/140 (9%)
Query: 201 GVGLTEAPEVKGWENVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMP 260
G G+T V+ N+ + L DNQIT+L+ + + L L+ N L+ + +
Sbjct: 50 GTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS--AIAGLQ 107
Query: 261 SLKVLNLSHAELTEL-PV-GISDLVSLQHLDLSE-SDISELPGELKALVNLKCLNLEWTR 317
S+K L+L+ ++T++ P+ G+S+L L +LDL++ ++IS L G L NL+ L++ +
Sbjct: 108 SIKTLDLTSTQITDVTPLAGLSNLQVL-YLDLNQITNISPLAG----LTNLQYLSIGNAQ 162
Query: 318 NLITIPRQLISNLSRLHVLR 337
P ++NLS+L L+
Sbjct: 163 VSDLTP---LANLSKLTTLK 179
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 73/142 (51%), Gaps = 15/142 (10%)
Query: 200 AGVGLTEAPEVKGWENVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFM 259
+G L + G ++++ + L QIT+++ +A +L L+L+ N++ I +
Sbjct: 93 SGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNIS--PLAGL 150
Query: 260 PSLKVLNLSHAELTEL-PVG-ISDLVSLQHLDLSESDISELPGELKALVNLKCLN----- 312
+L+ L++ +A++++L P+ +S L +L+ D SDIS L L L+ + N
Sbjct: 151 TNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPL-ASLPNLIEVHLKNNQISD 209
Query: 313 ---LEWTRNL--ITIPRQLISN 329
L T NL +T+ Q I+N
Sbjct: 210 VSPLANTSNLFIVTLTNQTITN 231
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 61/117 (52%), Gaps = 10/117 (8%)
Query: 241 LFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISD-LVSLQHLDLSESDISELP 299
L+LN N++ + F + +L+ L + +LT +P G+ D L L LDL+++ + +P
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97
Query: 300 ----GELKALVNLKCLNLEW---TRNLITIPRQLISNLSRLHVLRMFGASHNAFDGA 349
LK+L ++ N W R+++ + R +++ + + V+R G + N D A
Sbjct: 98 RGAFDNLKSLTHIYLYNNPWDCECRDIMYL-RNWVADHTSI-VMRWDGKAVNDPDSA 152
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 12/98 (12%)
Query: 262 LKVLNLSHAELTELPVGISDLVSLQHLDLSE-SDISELP---------GELKALVNLKCL 311
L+ L L+ L LP I+ L L+ L + +++ELP GE + LVNL+ L
Sbjct: 129 LETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSL 188
Query: 312 NLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGA 349
LEWT + ++P I+NL L L++ + +A A
Sbjct: 189 RLEWT-GIRSLPAS-IANLQNLKSLKIRNSPLSALGPA 224
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 227 TNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISDLVSLQ 286
+L E AT + L L L + FR L+ + A L ELP L+
Sbjct: 72 ADLLEDATQPGRVALELRSVPLPQFPDQAFRLS-HLQHXTIDAAGLXELPDTXQQFAGLE 130
Query: 287 HLDLSESDISELPGELKALVNLKCLNLEWTRNLITIPRQLIS 328
L L+ + + LP + +L L+ L++ L +P L S
Sbjct: 131 TLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLAS 172
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 241 LFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISD-LVSLQHLDLSESDISELP 299
L+L N++ + F + L L+L + +LT LP G+ D L L L L+++ + +P
Sbjct: 43 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 102
Query: 300 ----GELKALVNLKCLNLEW 315
LK+L ++ LN W
Sbjct: 103 RGAFDNLKSLTHIWLLNNPW 122
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 241 LFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISD-LVSLQHLDLSESDISELP 299
L+L N++ + F + L L+L + +LT LP G+ D L L L L+++ + +P
Sbjct: 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 94
Query: 300 ----GELKALVNLKCLNLEW 315
LK+L ++ LN W
Sbjct: 95 RGAFDNLKSLTHIWLLNNPW 114
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 6/103 (5%)
Query: 219 ISLMDNQITNL--SEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELP 276
+++ N I+ L S++ + L L ++ N++Q + F+F L+ L+LSH +L +
Sbjct: 26 LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-- 83
Query: 277 VGISDLVSLQHLDLSESDISELP--GELKALVNLKCLNLEWTR 317
+ V+L+HLDLS + LP E + LK L L T
Sbjct: 84 ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH 126
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 63/136 (46%), Gaps = 11/136 (8%)
Query: 196 FLVYAGVGLTEAPEVKGWENVRRI--SLMDN----QITNLSEVATCRHLLTLFLNQNKLQ 249
+L+ + G+ P+V +++++ + DN I S V + L+LN+N +Q
Sbjct: 108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167
Query: 250 MIHNDFFRFMPSLKVLNLS-HAELTELPVGISDLVSLQH-LDLSESDISELPGELKALVN 307
IHN F L LNLS + L ELP + S LD+S + I LP L N
Sbjct: 168 EIHNSAFNGT-QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS--YGLEN 224
Query: 308 LKCLNLEWTRNLITIP 323
LK L T NL +P
Sbjct: 225 LKKLRARSTYNLKKLP 240
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 241 LFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISD-LVSLQHLDLSESDISELP 299
L+L N++ + F + L L+L + +LT LP G+ D L L L L+++ + +P
Sbjct: 35 LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 94
Query: 300 ----GELKALVNLKCLNLEW 315
L++L ++ LN W
Sbjct: 95 RGAFDNLRSLTHIWLLNNPW 114
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 77/139 (55%), Gaps = 13/139 (9%)
Query: 202 VGLTEAPEVKGWENVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPS 261
G+T ++ N+ + L DNQIT+L+ + + L L+ N L+ + + S
Sbjct: 57 TGVTTIEGIQYLNNLIGLELKDNQITDLTPLKNLTKITELELSGNPLKNVS--AIAGLQS 114
Query: 262 LKVLNLSHAELTEL-PV-GISDLVSLQHLDLSE-SDISELPGELKALVNLKCLNLEWTRN 318
+K L+L+ ++T++ P+ G+S+L L +LDL++ ++IS L G L NL+ L++ +
Sbjct: 115 IKTLDLTSTQITDVTPLAGLSNLQVL-YLDLNQITNISPLAG----LTNLQYLSIGNNQV 169
Query: 319 LITIPRQLISNLSRLHVLR 337
P ++NLS+L LR
Sbjct: 170 NDLTP---LANLSKLTTLR 185
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Query: 200 AGVGLTEAPEVKGWENVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFM 259
+G L + G ++++ + L QIT+++ +A +L L+L+ N++ I +
Sbjct: 99 SGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNIS--PLAGL 156
Query: 260 PSLKVLNLSHAELTEL-PVG-ISDLVSLQHLDLSESDISEL 298
+L+ L++ + ++ +L P+ +S L +L+ D SDIS L
Sbjct: 157 TNLQYLSIGNNQVNDLTPLANLSKLTTLRADDNKISDISPL 197
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 69/161 (42%), Gaps = 31/161 (19%)
Query: 170 GKVKMHDVIRDMALWIVCDIEKEKENFLVYAGVGLTEAPEVKGWENVRRISLMDNQITNL 229
GK + D + L V ++ ++ +G+ V+ N+ +I+ +NQ+T++
Sbjct: 27 GKTNVTDTVSQTDLDQVTTLQADR--------LGIKSIDGVEYLNNLTQINFSNNQLTDI 78
Query: 230 SEVATCRHLLTLFLNQNK---------------LQMIHNDFFRFMPSLKVLNLSHAELTE 274
+ + L+ + +N N+ L + +N P + NL+ EL+
Sbjct: 79 TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS 138
Query: 275 LPV----GISDLVSLQHLDLSESDISELPGELKALVNLKCL 311
+ +S L SLQ L+ S + ++ +LK L NL L
Sbjct: 139 NTISDISALSGLTSLQQLNFSSNQVT----DLKPLANLTTL 175
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 78/342 (22%), Positives = 142/342 (41%), Gaps = 53/342 (15%)
Query: 186 VCDIEKEKE----NFLVYAGVGLTEAPEVKGWENVRRISLMDNQITNLSEVATCRHLLTL 241
+ DI+ K N L + +++ + G ++++++ NQ+T+L +A L L
Sbjct: 119 ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERL 178
Query: 242 FLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTEL-PVGISDLVSLQHLDLSESDISELPG 300
++ NK+ I + +L+ L ++ +++++ P+GI L +L L L+ + + ++ G
Sbjct: 179 DISSNKVSDIS--VLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDI-G 233
Query: 301 ELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGA 360
L +L NL L+L + ISNL+ L L + S S L G A
Sbjct: 234 TLASLTNLTDLDLANNQ---------ISNLAPLSGLTKLTELKLGANQISNISPLAGLTA 284
Query: 361 LI-----------VEELLGLKYLEVISFTLRSSHGLQSVLSSHKLRCCTRALLLQCFNDS 409
L + + LK L ++ + + V S KL+ L +N+
Sbjct: 285 LTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQR------LFFYNNK 338
Query: 410 TSLEVSALADLKQLNRL-----RIAECKKLEELKMDYTGEVQQFVFHSLKKVEIVNSYKL 464
S +VS+LA+L +N L +I++ L L + Q + +YK
Sbjct: 339 VS-DVSSLANLTNINWLSAGHNQISDLTPLANLT-----RITQLGLNDQAWTNAPVNYKA 392
Query: 465 KDLTFLVFAPNLESIEVLGCVAMEEMVSVGKFAAVPEVTANL 506
V PN V G + +S G P++T NL
Sbjct: 393 N-----VSIPNTVK-NVTGALIAPATISDGGSYTEPDITWNL 428
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 107/266 (40%), Gaps = 68/266 (25%)
Query: 203 GLTEAPEVKGWENVRRISLMDNQITNLS--EVATCRHLLTLFLNQNKLQMIHNDFFRFMP 260
GLTEA V+ + L +N+IT +S ++ C +L L L N + I D F
Sbjct: 23 GLTEA--------VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF---- 70
Query: 261 SLKVLNLSHAELTELPVGISDLVSLQHLDLSESDISELPGE-LKALVNLKCLNLEWTRNL 319
S L SL+HLDLS + +S L K L +L LNL
Sbjct: 71 -------------------SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK 111
Query: 320 ITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELLGLKYLEVISFTL 379
L S+L++L +LR+ + + F F G + E L + ++ S+
Sbjct: 112 TLGETSLFSHLTKLQILRV--GNMDTFTKIQRKD--FAGLTFLEE--LEIDASDLQSYEP 165
Query: 380 RSSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIAECKKLEELKM 439
+S +Q+V S L LLL+ F D TS EC +L + +
Sbjct: 166 KSLKSIQNV-SHLILHMKQHILLLEIFVDVTS----------------SVECLELRDTDL 208
Query: 440 DY-------TGE----VQQFVFHSLK 454
D TGE +++F F ++K
Sbjct: 209 DTFHFSELSTGETNSLIKKFTFRNVK 234
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 108/267 (40%), Gaps = 70/267 (26%)
Query: 203 GLTEAPEVKGWENVRRISLMDNQITNLS--EVATCRHLLTLFLNQNKLQMIHNDFFRFMP 260
GLTEA V+ + L +N+IT +S ++ C +L L L N + I D F
Sbjct: 49 GLTEA--------VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF---- 96
Query: 261 SLKVLNLSHAELTELPVGISDLVSLQHLDLSESDISELPGE-LKALVNLKCLNLEWTRNL 319
S L SL+HLDLS + +S L K L +L LNL
Sbjct: 97 -------------------SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK 137
Query: 320 ITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELLGLKYLEVISFTL 379
L S+L++L +LR+ + + F G +EE L + ++ S+
Sbjct: 138 TLGETSLFSHLTKLQILRV--GNMDTFTKIQRKDF---AGLTFLEE-LEIDASDLQSYEP 191
Query: 380 RSSHGLQSVLSSH-KLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIAECKKLEELK 438
+S +Q+V SH L LLL+ F D TS EC +L +
Sbjct: 192 KSLKSIQNV--SHLILHMKQHILLLEIFVDVTS----------------SVECLELRDTD 233
Query: 439 MDY-------TGE----VQQFVFHSLK 454
+D TGE +++F F ++K
Sbjct: 234 LDTFHFSELSTGETNSLIKKFTFRNVK 260
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 68/161 (42%), Gaps = 31/161 (19%)
Query: 170 GKVKMHDVIRDMALWIVCDIEKEKENFLVYAGVGLTEAPEVKGWENVRRISLMDNQITNL 229
GK + D + L V ++ ++ +G+ V+ N+ +I+ +NQ+T++
Sbjct: 27 GKTNVTDTVSQTDLDQVTTLQADR--------LGIKSIDGVEYLNNLTQINFSNNQLTDI 78
Query: 230 SEVATCRHLLTLFLNQNK---------------LQMIHNDFFRFMPSLKVLNLSHAELTE 274
+ + L+ + +N N+ L + +N P + NL+ EL+
Sbjct: 79 TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS 138
Query: 275 LPV----GISDLVSLQHLDLSESDISELPGELKALVNLKCL 311
+ +S L SLQ L S + ++ +LK L NL L
Sbjct: 139 NTISDISALSGLTSLQQLSFSSNQVT----DLKPLANLTTL 175
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 68/161 (42%), Gaps = 31/161 (19%)
Query: 170 GKVKMHDVIRDMALWIVCDIEKEKENFLVYAGVGLTEAPEVKGWENVRRISLMDNQITNL 229
GK + D + L V ++ ++ +G+ V+ N+ +I+ +NQ+T++
Sbjct: 27 GKTNVTDTVSQTDLDQVTTLQADR--------LGIKSIDGVEYLNNLTQINFSNNQLTDI 78
Query: 230 SEVATCRHLLTLFLNQNK---------------LQMIHNDFFRFMPSLKVLNLSHAELTE 274
+ + L+ + +N N+ L + +N P + NL+ EL+
Sbjct: 79 TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS 138
Query: 275 LPV----GISDLVSLQHLDLSESDISELPGELKALVNLKCL 311
+ +S L SLQ L S + ++ +LK L NL L
Sbjct: 139 NTISDISALSGLTSLQQLSFSSNQVT----DLKPLANLTTL 175
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 12/110 (10%)
Query: 207 APEVKGWENVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLN 266
AP + G + + L NQI+N+S +A L L LN+N+L+ I + +L L
Sbjct: 255 AP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS--PISNLKNLTYLT 311
Query: 267 LSHAELTEL-PVGISDLVSLQHLDLSESDISELPGELKALVNLKCLNLEW 315
L ++++ PV S L LQ L S + +S ++ +L NL N+ W
Sbjct: 312 LYFNNISDISPV--SSLTKLQRLFFSNNKVS----DVSSLANLT--NINW 353
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 64/129 (49%), Gaps = 17/129 (13%)
Query: 241 LFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISD-LVSLQHLDLSESDISELP 299
L+L+ N++ + F + +LK L L +L LPVG+ D L L LDL + ++ LP
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLP 104
Query: 300 GEL-KALVNLK----CLNLEWTRNLITIPRQL--ISNLSRLHV--LRMFGASHNAFDGAS 350
+ LV+LK C N L +PR + +++L+ L + ++ H AFD S
Sbjct: 105 SAVFDRLVHLKELFMCCN-----KLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS 159
Query: 351 E--DSILFG 357
+ LFG
Sbjct: 160 SLTHAYLFG 168
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 215 NVRRISLMDNQITNLSE--VATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAEL 272
N++ + L NQ+ L + L L L N+L ++ + F + LK L + +L
Sbjct: 65 NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124
Query: 273 TELPVGISDLVSLQHLDLSESDISELP 299
TELP GI L L HL L ++ + +P
Sbjct: 125 TELPRGIERLTHLTHLALDQNQLKSIP 151
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 64/127 (50%), Gaps = 5/127 (3%)
Query: 216 VRRISLMDNQITNLS--EVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELT 273
R + L N+I L+ E A+ HL L LN+N + + F + +L+ L L L
Sbjct: 34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93
Query: 274 ELPVGI-SDLVSLQHLDLSESDISELPGEL-KALVNLKCLNLEWTRNLITIPRQLISNLS 331
+P+G+ + L +L LD+SE+ I L + + L NLK L + +L+ I + S L+
Sbjct: 94 LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV-GDNDLVYISHRAFSGLN 152
Query: 332 RLHVLRM 338
L L +
Sbjct: 153 SLEQLTL 159
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 73/145 (50%), Gaps = 25/145 (17%)
Query: 215 NVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMI---------------HNDFFRF- 258
NV ++ L N++T++ +A ++L LFL++NK++ + HN
Sbjct: 69 NVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN 128
Query: 259 ----MPSLKVLNLSHAELTELPVGISDLVSLQHLDLSESDISELPGELKALVNLKCLNLE 314
+P L+ L L + ++T++ V +S L L L L ++ IS++ L L L+ NL
Sbjct: 129 GLVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDI-VPLAGLTKLQ--NLY 184
Query: 315 WTRNLITIPRQLISNLSRLHVLRMF 339
++N I+ R L + L L VL +F
Sbjct: 185 LSKNHISDLRAL-AGLKNLDVLELF 208
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 259 MPSLKVLNLSHAELTELPVGISDLVSLQHLDLSESDISELP-GELKALVNLKCLNLEWTR 317
+P L L+LSH +L LP+ L +L LD+S + ++ LP G L+ L L+ L L+
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 318 NLITIPRQLISNLSRLHVLRM 338
L T+P L++ +L L +
Sbjct: 136 -LKTLPPGLLTPTPKLEKLSL 155
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 241 LFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVG-ISDLVSLQHLDLSESDISELP 299
L+L N+L+ + P L+ L+L++ +LTELP G ++ L +L L L E+ + +P
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 259 MPSLKVLNLSHAELTELPVGISDLVSLQHLDLSESDISELP-GELKALVNLKCLNLEWTR 317
+P L L+LSH +L LP+ L +L LD+S + ++ LP G L+ L L+ L L+
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 318 NLITIPRQLISNLSRLHVLRM 338
L T+P L++ +L L +
Sbjct: 136 -LKTLPPGLLTPTPKLEKLSL 155
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 241 LFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVG-ISDLVSLQHLDLSESDISELP 299
L+L N+L+ + P L+ L+L++ +LTELP G ++ L +L L L E+ + +P
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 259 MPSLKVLNLSHAELTELPVGISDLVSLQHLDLSESDISELP-GELKALVNLKCLNLEWTR 317
+P L L+LSH +L LP+ L +L LD+S + ++ LP G L+ L L+ L L+
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 318 NLITIPRQLISNLSRLHVLRM 338
L T+P L++ +L L +
Sbjct: 136 -LKTLPPGLLTPTPKLEKLSL 155
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 241 LFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVG-ISDLVSLQHLDLSESDISELP 299
L+L N+L+ + P L+ L+L++ +LTELP G ++ L +L L L E+ + +P
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 259 MPSLKVLNLSHAELTELPVGISDLVSLQHLDLSESDISELP-GELKALVNLKCLNLEWTR 317
+P L L+LSH +L LP+ L +L LD+S + ++ LP G L+ L L+ L L+
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 318 NLITIPRQLISNLSRLHVLRM 338
L T+P L++ +L L +
Sbjct: 136 -LKTLPPGLLTPTPKLEKLSL 155
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 241 LFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVG-ISDLVSLQHLDLSESDISELP 299
L+L N+L+ + P L+ L+L++ LTELP G ++ L +L L L E+ + +P
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 72/145 (49%), Gaps = 25/145 (17%)
Query: 215 NVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMI---------------HNDFFRF- 258
NV ++ L N++T++ + ++L LFL++NK++ + HN
Sbjct: 66 NVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDIN 125
Query: 259 ----MPSLKVLNLSHAELTELPVGISDLVSLQHLDLSESDISELPGELKALVNLKCLNLE 314
+P L+ L L + ++T++ V +S L L L L ++ IS++ L L L+ NL
Sbjct: 126 GLVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDIV-PLAGLTKLQ--NLY 181
Query: 315 WTRNLITIPRQLISNLSRLHVLRMF 339
++N I+ R L + L L VL +F
Sbjct: 182 LSKNHISDLRAL-AGLKNLDVLELF 205
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 259 MPSLKVLNLSHAELTELPVGISDLVSLQHLDLSESDISELP-GELKALVNLKCLNLEWTR 317
+P L L+LSH +L LP+ L +L LD+S + ++ LP G L+ L L+ L L+
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 318 NLITIPRQLISNLSRLHVLRM 338
L T+P L++ +L L +
Sbjct: 136 -LKTLPPGLLTPTPKLEKLSL 155
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 241 LFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVG-ISDLVSLQHLDLSESDISELP 299
L+L N+L+ + P L+ L+L++ LTELP G ++ L +L L L E+ + +P
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 66/155 (42%), Gaps = 32/155 (20%)
Query: 215 NVRRISLMDN--QITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAEL 272
N R ++L +N Q+ RHL L L++N ++ I F +PSL L L L
Sbjct: 36 NTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRL 95
Query: 273 TELPVGISDLVS-LQHLDLSESDISELP---------------GELK-----------AL 305
T +P + +S L+ L L + I +P GELK L
Sbjct: 96 TTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGL 155
Query: 306 VNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFG 340
VNL+ LNL NL IP ++ L RL L + G
Sbjct: 156 VNLRYLNLGMC-NLKDIPN--LTALVRLEELELSG 187
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 211 KGWENVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHA 270
+G N+R ++L + ++ + L L L+ N+L +I F+ + SL+ L L HA
Sbjct: 153 EGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHA 212
Query: 271 ELTELPV-GISDLVSLQHLDLSESDISELPGEL 302
++ + DL SL+ L+LS +++ LP +L
Sbjct: 213 QVATIERNAFDDLKSLEELNLSHNNLMSLPHDL 245
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 64/139 (46%), Gaps = 17/139 (12%)
Query: 196 FLVYAGVGLTEAPEVKGWENVRRI--SLMDN----QITNLSEVATCRHLLTLFLNQNKLQ 249
+L+ + G+ P+V +++++ + DN I S V + L+LN+N +Q
Sbjct: 108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167
Query: 250 MIHNDFFRFMPSLKVLNLS-HAELTELPV----GISDLVSLQHLDLSESDISELPGELKA 304
IHN F L LNLS + L ELP G S V LD+S + I LP
Sbjct: 168 EIHNCAFNGT-QLDELNLSDNNNLEELPNDVFHGASGPVI---LDISRTRIHSLPS--YG 221
Query: 305 LVNLKCLNLEWTRNLITIP 323
L NLK L T NL +P
Sbjct: 222 LENLKKLRARSTYNLKKLP 240
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 259 MPSLKVLNLSHAELTELPVGISDLVSLQHLDLSESDISELP-GELKALVNLKCLNLEWTR 317
+P L L+LSH +L LP+ L +L LD+S + ++ LP G L+ L L+ L L+
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 318 NLITIPRQLISNLSRLHVLRM 338
L T+P L++ +L L +
Sbjct: 136 -LKTLPPGLLTPTPKLEKLSL 155
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 241 LFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVG-ISDLVSLQHLDLSESDISELP 299
L+L N+L+ + P L+ L+L++ LTELP G ++ L +L L L E+ + +P
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 35.4 bits (80), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 66/155 (42%), Gaps = 32/155 (20%)
Query: 215 NVRRISLMDN--QITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAEL 272
N R ++L +N Q+ RHL L L++N ++ I F +PSL L L L
Sbjct: 36 NTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRL 95
Query: 273 TELPVGISDLVS-LQHLDLSESDISELP---------------GELK-----------AL 305
T +P + +S L+ L L + I +P GELK L
Sbjct: 96 TTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGL 155
Query: 306 VNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFG 340
VNL+ LNL NL IP ++ L RL L + G
Sbjct: 156 VNLRYLNLGMC-NLKDIPN--LTALVRLEELELSG 187
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 211 KGWENVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHA 270
+G N+R ++L + ++ + L L L+ N+L +I F+ + SL+ L L HA
Sbjct: 153 EGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHA 212
Query: 271 ELTELPV-GISDLVSLQHLDLSESDISELPGEL 302
++ + DL SL+ L+LS +++ LP +L
Sbjct: 213 QVATIERNAFDDLKSLEELNLSHNNLMSLPHDL 245
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 35.4 bits (80), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 259 MPSLKVLNLSHAELTELPVGISDLVSLQHLDLSESDISELP-GELKALVNLKCLNLEWTR 317
+P L L+LSH +L LP+ L +L LD+S + ++ LP G L+ L L+ L L+
Sbjct: 77 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 136
Query: 318 NLITIPRQLISNLSRLHVLRM 338
L T+P L++ +L L +
Sbjct: 137 -LKTLPPGLLTPTPKLEKLSL 156
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 241 LFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVG-ISDLVSLQHLDLSESDISELP 299
L+L N+L+ + P L+ L+L++ LTELP G ++ L +L L L E+ + +P
Sbjct: 130 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 189
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 259 MPSLKVLNLSHAELTELPVGISDLVSLQHLDLSESDISELP-GELKALVNLKCLNLEWTR 317
+P L L+LSH +L LP+ L +L LD+S + ++ LP G L+ L L+ L L+
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 318 NLITIPRQLISNLSRLHVLRM 338
L T+P L++ +L L +
Sbjct: 136 -LKTLPPGLLTPTPKLEKLSL 155
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 241 LFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVG-ISDLVSLQHLDLSESDISELP 299
L+L N+L+ + P L+ L+L++ LTELP G ++ L +L L L E+ + +P
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 259 MPSLKVLNLSHAELTELPVGISDLVSLQHLDLSESDISELP-GELKALVNLKCLNLEWTR 317
+P L L+LSH +L LP+ L +L LD+S + ++ LP G L+ L L+ L L+
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 318 NLITIPRQLISNLSRLHVLRM 338
L T+P L++ +L L +
Sbjct: 136 -LKTLPPGLLTPTPKLEKLSL 155
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 241 LFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVG-ISDLVSLQHLDLSESDISELP 299
L+L N+L+ + P L+ L+L++ +LTELP G ++ L +L L L E+ + +P
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 78/157 (49%), Gaps = 25/157 (15%)
Query: 204 LTEAPEVKGWENVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMI------------ 251
+T+ ++ NV ++ L N++T++ +A ++L LFL++NK++ +
Sbjct: 78 ITDISPIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSL 137
Query: 252 ---HNDF-----FRFMPSLKVLNLSHAELTELPVGISDLVSLQHLDLSESDISELPGELK 303
HN +P L+ L L + ++T++ V +S L L L L ++ IS++ L
Sbjct: 138 SLEHNGISDINGLVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDI-VPLA 195
Query: 304 ALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFG 340
L L+ NL ++N I+ R L + L L VL +F
Sbjct: 196 GLTKLQ--NLYLSKNHISDLRAL-AGLKNLDVLELFS 229
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 259 MPSLKVLNLSHAELTELPVGISDLVSLQHLDLSESDISELP-GELKALVNLKCLNLEWTR 317
+P L L+LSH +L LP+ L +L LD+S + ++ LP G L+ L L+ L L+
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 318 NLITIPRQLISNLSRLHVLRM 338
L T+P L++ +L L +
Sbjct: 136 -LKTLPPGLLTPTPKLEKLSL 155
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 241 LFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVG-ISDLVSLQHLDLSESDISELP 299
L+L N+L+ + P L+ L+L++ +LTELP G ++ L +L L L E+ + +P
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 71/143 (49%), Gaps = 12/143 (8%)
Query: 170 GKVKMHDVIRDMALWIVCDIEKEKENFLVYAGVGLTEAPEVKGWENVRRISLMDNQITNL 229
GK + D + L V ++ ++ +G+ V+ N+ +I+ +NQ+T++
Sbjct: 27 GKTNVTDTVSQTDLDQVTTLQADR--------LGIKSIDGVEYLNNLTQINFSNNQLTDI 78
Query: 230 SEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISDLVSLQHLD 289
+ + L+ + +N N++ I + +L L L + ++T++ + +L +L L+
Sbjct: 79 TPLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLE 135
Query: 290 LSESDISELPGELKALVNLKCLN 312
LS + IS++ L L +L+ LN
Sbjct: 136 LSSNTISDI-SALSGLTSLQQLN 157
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 71/143 (49%), Gaps = 12/143 (8%)
Query: 170 GKVKMHDVIRDMALWIVCDIEKEKENFLVYAGVGLTEAPEVKGWENVRRISLMDNQITNL 229
GK + D + L V ++ ++ +G+ V+ N+ +I+ +NQ+T++
Sbjct: 27 GKTNVTDTVSQTDLDQVTTLQADR--------LGIKSIDGVEYLNNLTQINFSNNQLTDI 78
Query: 230 SEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISDLVSLQHLD 289
+ + L+ + +N N++ I + +L L L + ++T++ + +L +L L+
Sbjct: 79 TPLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLE 135
Query: 290 LSESDISELPGELKALVNLKCLN 312
LS + IS++ L L +L+ LN
Sbjct: 136 LSSNTISDI-SALSGLTSLQQLN 157
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 12/110 (10%)
Query: 207 APEVKGWENVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLN 266
AP + G + + L NQI+N+S +A L L LN+N+L+ I + +L L
Sbjct: 254 AP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS--PISNLKNLTYLT 310
Query: 267 LSHAELTEL-PVGISDLVSLQHLDLSESDISELPGELKALVNLKCLNLEW 315
L ++++ PV S L LQ L S + +S ++ +L NL N+ W
Sbjct: 311 LYFNNISDISPV--SSLTKLQRLFFSNNKVS----DVSSLANLT--NINW 352
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 76/175 (43%), Gaps = 17/175 (9%)
Query: 240 TLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPV-GISDLVSLQHLDLSESDISEL 298
+L L+ NK+ I + R +L+VL L + + + L SL+HLDLS++ +S L
Sbjct: 56 SLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL 115
Query: 299 PGE-LKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFG 357
L +LK LNL L NL+ L LR+ N + I F
Sbjct: 116 SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI----GNVETFSEIRRIDFA 171
Query: 358 GGALIVEELLGLKYLEVISFTLRS--SHGLQSVLSSH--KLRCCTRALLLQCFND 408
G L L LE+ + +LR+ S L+S+ H L A LL+ F D
Sbjct: 172 G-------LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFAD 219
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 76/175 (43%), Gaps = 17/175 (9%)
Query: 240 TLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPV-GISDLVSLQHLDLSESDISEL 298
+L L+ NK+ I + R +L+VL L + + + L SL+HLDLS++ +S L
Sbjct: 30 SLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL 89
Query: 299 PGE-LKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFG 357
L +LK LNL L NL+ L LR+ N + I F
Sbjct: 90 SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI----GNVETFSEIRRIDFA 145
Query: 358 GGALIVEELLGLKYLEVISFTLRS--SHGLQSVLSSH--KLRCCTRALLLQCFND 408
G L L LE+ + +LR+ S L+S+ H L A LL+ F D
Sbjct: 146 G-------LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFAD 193
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 15/125 (12%)
Query: 196 FLVYAGVGLTEAPEVKGWENVRRISLMDNQITNLSEVA--TCRHLLTLFLNQNKLQMIHN 253
F V G+ K +R+I+ +N+IT++ E A + + L N+L+ + +
Sbjct: 44 FTVLEATGI-----FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQH 98
Query: 254 DFFRFMPSLKVLNLSHAELT----ELPVGISDLVSLQHLDLSESDISEL-PGELKALVNL 308
F+ + SLK L L +T + +G+S S++ L L ++ I+ + PG L +L
Sbjct: 99 KMFKGLESLKTLMLRSNRITCVGNDSFIGLS---SVRLLSLYDNQITTVAPGAFDTLHSL 155
Query: 309 KCLNL 313
LNL
Sbjct: 156 STLNL 160
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 99/258 (38%), Gaps = 35/258 (13%)
Query: 211 KGWENVRRISLMDNQITNLSEVATC--RHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLS 268
G N+ + L DN++T + A L L+L N ++ I + F +PSL+ L+L
Sbjct: 109 NGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDL- 167
Query: 269 HAELTELPV----GISDLVSLQHLDLSESDISELPGELKALVNLKCLNLEWTRNLITIPR 324
EL L L +L++L+L+ ++ E+P L L+ L L+L +L I
Sbjct: 168 -GELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLS-GNHLSAIRP 224
Query: 325 QLISNLSRLHVLRMFGAS-----HNAFDGASEDSILFGGGALIVEELLGLKYLEVISFTL 379
L L L M + NAFD +VE L L ++ L
Sbjct: 225 GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS----------LVEINLAHNNLTLLPHDL 274
Query: 380 RSS-HGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIAECKKLEELK 438
+ H L+ + H C +L + + D+ N A C LK
Sbjct: 275 FTPLHHLERIHLHHNPWNCNCDILWLSW---------WIKDMAPSNTACCARCNTPPNLK 325
Query: 439 MDYTGEVQQFVFHSLKKV 456
Y GE+ Q F V
Sbjct: 326 GRYIGELDQNYFTCYAPV 343
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 17/111 (15%)
Query: 231 EVATCRHLLTLFLNQNKLQMIHNDFFRFMPS-LKVLNLSHAELTELPVG-ISDLVSLQHL 288
EVA C HL KL + +D +P+ + VLNL+H +L LP + L L
Sbjct: 17 EVADCSHL--------KLTQVPDD----LPTNITVLNLTHNQLRRLPAANFTRYSQLTSL 64
Query: 289 DLSESDISELPGEL-KALVNLKCLNLEWTR--NLITIPRQLISNLSRLHVL 336
D+ + IS+L EL + L LK LNL+ L +NL+ LH++
Sbjct: 65 DVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLM 115
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 216 VRRISLMDNQITNLSE--VATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELT 273
++ ++L N+++ LS+ A C +L L L N +Q I N+ F +L L+LSH L+
Sbjct: 85 LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 144
Query: 274 ELPVG 278
+G
Sbjct: 145 STKLG 149
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 200 AGVGLTEAPEVKGWENVRRISLMDNQITNLSEVATCRH--LLTLFLNQNKLQMIHNDFFR 257
+ + LT+ P+ N+ ++L NQ+ L R+ L +L + N + + + +
Sbjct: 22 SHLKLTQVPDDLP-TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQ 80
Query: 258 FMPSLKVLNLSHAELTEL 275
+P LKVLNL H EL++L
Sbjct: 81 KLPMLKVLNLQHNELSQL 98
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 17/111 (15%)
Query: 231 EVATCRHLLTLFLNQNKLQMIHNDFFRFMPS-LKVLNLSHAELTELPVG-ISDLVSLQHL 288
EVA C HL KL + +D +P+ + VLNL+H +L LP + L L
Sbjct: 12 EVADCSHL--------KLTQVPDD----LPTNITVLNLTHNQLRRLPAANFTRYSQLTSL 59
Query: 289 DLSESDISELPGEL-KALVNLKCLNLEWTR--NLITIPRQLISNLSRLHVL 336
D+ + IS+L EL + L LK LNL+ L +NL+ LH++
Sbjct: 60 DVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLM 110
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 216 VRRISLMDNQITNLSE--VATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELT 273
++ ++L N+++ LS+ A C +L L L N +Q I N+ F +L L+LSH L+
Sbjct: 80 LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 139
Query: 274 ELPVG 278
+G
Sbjct: 140 STKLG 144
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 200 AGVGLTEAPEVKGWENVRRISLMDNQITNLSEVATCRH--LLTLFLNQNKLQMIHNDFFR 257
+ + LT+ P+ N+ ++L NQ+ L R+ L +L + N + + + +
Sbjct: 17 SHLKLTQVPDDLP-TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQ 75
Query: 258 FMPSLKVLNLSHAELTEL 275
+P LKVLNL H EL++L
Sbjct: 76 KLPMLKVLNLQHNELSQL 93
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 72/159 (45%), Gaps = 28/159 (17%)
Query: 170 GKVKMHDVIRDMALWIVCDIEKEKENFLVYAGVGLTEAPEVKGWENVRRISLMDNQITNL 229
GK + D + L V ++ ++ +G+ V+ N+ +I+ +NQ+T++
Sbjct: 31 GKTNVTDTVSQTDLDQVTTLQADR--------LGIKSIDGVEYLNNLTQINFSNNQLTDI 82
Query: 230 SEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISDLVSLQHLD 289
+ + L+ + +N N++ I + +L L L + ++T++ + +L +L L+
Sbjct: 83 TPLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLE 139
Query: 290 LSE---SDISELPG--------------ELKALVNLKCL 311
LS SDIS L G +LK L NL L
Sbjct: 140 LSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTL 178
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 12/110 (10%)
Query: 207 APEVKGWENVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLN 266
AP + G + + L NQI+N+S +A L L LN+N+L+ I + +L L
Sbjct: 258 AP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS--PISNLKNLTYLT 314
Query: 267 LSHAELTEL-PVGISDLVSLQHLDLSESDISELPGELKALVNLKCLNLEW 315
L ++++ PV S L LQ L + + +S ++ +L NL N+ W
Sbjct: 315 LYFNNISDISPV--SSLTKLQRLFFANNKVS----DVSSLANLT--NINW 356
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 72/159 (45%), Gaps = 28/159 (17%)
Query: 170 GKVKMHDVIRDMALWIVCDIEKEKENFLVYAGVGLTEAPEVKGWENVRRISLMDNQITNL 229
GK + D + L V ++ ++ +G+ V+ N+ +I+ +NQ+T++
Sbjct: 32 GKTNVTDTVSQTDLDQVTTLQADR--------LGIKSIDGVEYLNNLTQINFSNNQLTDI 83
Query: 230 SEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISDLVSLQHLD 289
+ + L+ + +N N++ I + +L L L + ++T++ + +L +L L+
Sbjct: 84 TPLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLE 140
Query: 290 LSE---SDISELPG--------------ELKALVNLKCL 311
LS SDIS L G +LK L NL L
Sbjct: 141 LSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTL 179
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 17/111 (15%)
Query: 231 EVATCRHLLTLFLNQNKLQMIHNDFFRFMPS-LKVLNLSHAELTELPVG-ISDLVSLQHL 288
EVA C HL KL + +D +P+ + VLNL+H +L LP + L L
Sbjct: 7 EVADCSHL--------KLTQVPDD----LPTNITVLNLTHNQLRRLPAANFTRYSQLTSL 54
Query: 289 DLSESDISELPGEL-KALVNLKCLNLEWTR--NLITIPRQLISNLSRLHVL 336
D+ + IS+L EL + L LK LNL+ L +NL+ LH++
Sbjct: 55 DVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLM 105
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 216 VRRISLMDNQITNLSE--VATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELT 273
++ ++L N+++ LS+ A C +L L L N +Q I N+ F +L L+LSH L+
Sbjct: 75 LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 134
Query: 274 ELPVG 278
+G
Sbjct: 135 STKLG 139
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 200 AGVGLTEAPEVKGWENVRRISLMDNQITNLSEVATCRH--LLTLFLNQNKLQMIHNDFFR 257
+ + LT+ P+ N+ ++L NQ+ L R+ L +L + N + + + +
Sbjct: 12 SHLKLTQVPDDLP-TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQ 70
Query: 258 FMPSLKVLNLSHAELTEL 275
+P LKVLNL H EL++L
Sbjct: 71 KLPMLKVLNLQHNELSQL 88
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 237 HLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISD-LVSLQHL 288
+L ++ NKL+ + F MP LK LNL+ +L +P GI D L SLQ +
Sbjct: 171 NLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKI 223
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 8/107 (7%)
Query: 216 VRRISLMDNQITNLSEVATCR--HLLTLFLNQ-NKLQMIHNDFFRFMPSLKVLNLSHAEL 272
+R + L +N I ++ A R L+ L L + KL+ I F + +LK LNL +
Sbjct: 149 LRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI 208
Query: 273 TELPVGISDLVSLQHLDLSESDISEL-PGELKALVNLKCLNLEWTRN 318
++P ++ LV L+ L++S + E+ PG L +LK L W N
Sbjct: 209 KDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKL---WVMN 251
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 73/145 (50%), Gaps = 25/145 (17%)
Query: 215 NVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMI---------------HNDF---- 255
NV ++ L N++T++ +A ++L LFL++NK++ + HN
Sbjct: 69 NVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN 128
Query: 256 -FRFMPSLKVLNLSHAELTELPVGISDLVSLQHLDLSESDISELPGELKALVNLKCLNLE 314
+P L+ L L + ++T++ V +S L L L L ++ IS++ L L L+ NL
Sbjct: 129 GLVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDI-VPLAGLTKLQ--NLY 184
Query: 315 WTRNLITIPRQLISNLSRLHVLRMF 339
++N I+ R L + L L VL +F
Sbjct: 185 LSKNHISDLRAL-AGLKNLDVLELF 208
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 73/146 (50%), Gaps = 25/146 (17%)
Query: 215 NVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMI---------------HNDF---- 255
NV ++ L N++T++ +A ++L LFL++NK++ + HN
Sbjct: 67 NVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN 126
Query: 256 -FRFMPSLKVLNLSHAELTELPVGISDLVSLQHLDLSESDISELPGELKALVNLKCLNLE 314
+P L+ L L + ++T++ V +S L L L L ++ IS++ L L L+ NL
Sbjct: 127 GLVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDI-VPLAGLTKLQ--NLY 182
Query: 315 WTRNLITIPRQLISNLSRLHVLRMFG 340
++N I+ R L + L L VL +F
Sbjct: 183 LSKNHISDLRAL-AGLKNLDVLELFS 207
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 33/150 (22%)
Query: 215 NVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMI---------------HNDF---- 255
NV ++ L N++T++ +A ++L LFL++NK++ + HN
Sbjct: 64 NVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN 123
Query: 256 -FRFMPSLKVLNLSHAELTELPVGISDLVSLQHLDLSESDISELPGELKALVNLKCL--- 311
+P L+ L L + ++T++ V +S L L L L ++ IS+ +V L CL
Sbjct: 124 GLVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISD-------IVPLACLTKL 175
Query: 312 -NLEWTRNLITIPRQLISNLSRLHVLRMFG 340
NL ++N I+ R L L L VL +F
Sbjct: 176 QNLYLSKNHISDLRALCG-LKNLDVLELFS 204
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 16/113 (14%)
Query: 241 LFLNQNKLQMIHN-----DFFRFMPSLKVLNLSHAELTELPVGI-SDLVSLQHLDLSESD 294
LFL +N LQ+ D F + L+VL L+H L LP G+ S L +L+ L L+ +
Sbjct: 456 LFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR 515
Query: 295 ISELP-GELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAF 346
++ L +L A NL+ L++ + L P +S L + +HN F
Sbjct: 516 LTVLSHNDLPA--NLEILDISRNQLLAPNPDVFVS-------LSVLDITHNKF 559
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 197 LVYAGVG-LTEAPEVKGWENVRRISLMD---NQITNLSEVATCRHLLTLFLNQNKLQMIH 252
+ Y G L E P + ++ L+D N++ +L T L L L+ N+++ I
Sbjct: 552 IFYXGYNNLEEFPASASLQKXVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIP 611
Query: 253 NDFFRFMPSLKVLNLSHAELTELP 276
DF F ++ L SH +L +P
Sbjct: 612 EDFCAFTDQVEGLGFSHNKLKYIP 635
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 72/145 (49%), Gaps = 25/145 (17%)
Query: 215 NVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMI---------------HNDF---- 255
NV ++ L N++T++ + ++L LFL++NK++ + HN
Sbjct: 87 NVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDIN 146
Query: 256 -FRFMPSLKVLNLSHAELTELPVGISDLVSLQHLDLSESDISELPGELKALVNLKCLNLE 314
+P L+ L L + ++T++ V +S L L L L ++ IS++ L L L+ NL
Sbjct: 147 GLVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDIV-PLAGLTKLQ--NLY 202
Query: 315 WTRNLITIPRQLISNLSRLHVLRMF 339
++N I+ R L + L L VL +F
Sbjct: 203 LSKNHISDLRAL-AGLKNLDVLELF 226
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 72/145 (49%), Gaps = 25/145 (17%)
Query: 215 NVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMI---------------HNDF---- 255
NV ++ L N++T++ + ++L LFL++NK++ + HN
Sbjct: 87 NVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDIN 146
Query: 256 -FRFMPSLKVLNLSHAELTELPVGISDLVSLQHLDLSESDISELPGELKALVNLKCLNLE 314
+P L+ L L + ++T++ V +S L L L L ++ IS++ L L L+ NL
Sbjct: 147 GLVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDIV-PLAGLTKLQ--NLY 202
Query: 315 WTRNLITIPRQLISNLSRLHVLRMF 339
++N I+ R L + L L VL +F
Sbjct: 203 LSKNHISDLRAL-AGLKNLDVLELF 226
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 72/145 (49%), Gaps = 25/145 (17%)
Query: 215 NVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMI---------------HNDF---- 255
NV ++ L N++T++ + ++L LFL++NK++ + HN
Sbjct: 87 NVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDIN 146
Query: 256 -FRFMPSLKVLNLSHAELTELPVGISDLVSLQHLDLSESDISELPGELKALVNLKCLNLE 314
+P L+ L L + ++T++ V +S L L L L ++ IS++ L L L+ NL
Sbjct: 147 GLVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDIV-PLAGLTKLQ--NLY 202
Query: 315 WTRNLITIPRQLISNLSRLHVLRMF 339
++N I+ R L + L L VL +F
Sbjct: 203 LSKNHISDLRAL-AGLKNLDVLELF 226
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 215 NVRRISLMDNQITNLSEVA--TCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAEL 272
N+ + L N+I+++ E A L L L+QN++ +H FR + L L L L
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213
Query: 273 TELPV-GISDLVSLQHLDLSES 293
+ LP ++ L +LQ+L L+++
Sbjct: 214 SALPTEALAPLRALQYLRLNDN 235
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 215 NVRRISLMDNQITNLSEVA--TCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAEL 272
N+ + L N+I+++ E A L L L+QN++ +H FR + L L L L
Sbjct: 153 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 212
Query: 273 TELPV-GISDLVSLQHLDLSES 293
+ LP ++ L +LQ+L L+++
Sbjct: 213 SALPTEALAPLRALQYLRLNDN 234
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 72/146 (49%), Gaps = 25/146 (17%)
Query: 215 NVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMI---------------HNDFFRF- 258
NV ++ L N++T++ + ++L LFL++NK++ + HN
Sbjct: 64 NVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDIN 123
Query: 259 ----MPSLKVLNLSHAELTELPVGISDLVSLQHLDLSESDISELPGELKALVNLKCLNLE 314
+P L+ L L + ++T++ V +S L L L L ++ IS++ L L L+ NL
Sbjct: 124 GLVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDI-VPLAGLTKLQ--NLY 179
Query: 315 WTRNLITIPRQLISNLSRLHVLRMFG 340
++N I+ R L + L L VL +F
Sbjct: 180 LSKNHISDLRAL-AGLKNLDVLELFS 204
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 32/146 (21%)
Query: 219 ISLMDNQITNL--SEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELP 276
+ L +N+IT + + ++L TL L NK+ I F + L+ L LS +L ELP
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 277 VGISDLVSLQHLDLSESDISEL-------------------P--------GELKALVNLK 309
+ +LQ L + E++I+++ P G + + L
Sbjct: 117 EKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174
Query: 310 CLNLEWTRNLITIPRQLISNLSRLHV 335
+ + T N+ TIP+ L +L+ LH+
Sbjct: 175 YIRIADT-NITTIPQGLPPSLTELHL 199
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 12/120 (10%)
Query: 204 LTEAPEVKGWENVRRISLMDNQITNL--SEVATCRHLLTLFLNQNKLQM--IHNDFFRFM 259
L E PE K + ++ + + +N+IT + S ++ + L N L+ I N F+ M
Sbjct: 112 LKELPE-KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170
Query: 260 PSLKVLNLSHAELTELPVGISDLVSLQHLD---LSESDISELPGELKALVNLKCLNLEWT 316
L + ++ +T +P G+ ++ HLD +++ D + LK L NL L L +
Sbjct: 171 KKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAA----SLKGLNNLAKLGLSFN 226
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 32/146 (21%)
Query: 219 ISLMDNQITNL--SEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELP 276
+ L +N+IT + + ++L TL L NK+ I F + L+ L LS +L ELP
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 277 VGISDLVSLQHLDLSESDISEL-------------------P--------GELKALVNLK 309
+ +LQ L + E++I+++ P G + + L
Sbjct: 117 EKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174
Query: 310 CLNLEWTRNLITIPRQLISNLSRLHV 335
+ + T N+ TIP+ L +L+ LH+
Sbjct: 175 YIRIADT-NITTIPQGLPPSLTELHL 199
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 12/120 (10%)
Query: 204 LTEAPEVKGWENVRRISLMDNQITNL--SEVATCRHLLTLFLNQNKLQM--IHNDFFRFM 259
L E PE K + ++ + + +N+IT + S ++ + L N L+ I N F+ M
Sbjct: 112 LKELPE-KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170
Query: 260 PSLKVLNLSHAELTELPVGISDLVSLQHLD---LSESDISELPGELKALVNLKCLNLEWT 316
L + ++ +T +P G+ ++ HLD +++ D + LK L NL L L +
Sbjct: 171 KKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAA----SLKGLNNLAKLGLSFN 226
>pdb|1A9N|A Chain A, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
pdb|1A9N|C Chain C, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
Length = 176
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 219 ISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVG 278
I DN+I L R L TL +N N++ I + +P L L L++ L EL
Sbjct: 47 IDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELG-D 105
Query: 279 ISDLVSLQHL 288
+ L SL+ L
Sbjct: 106 LDPLASLKSL 115
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 218 RISLMDNQITNLSEVA--TCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELT-E 274
++ L NQ+T + A H+ L L +NK++ I N F + LK LNL +++
Sbjct: 58 KLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCV 117
Query: 275 LPVGISDLVSLQHLDLSESDIS 296
+P L SL L+L+ + +
Sbjct: 118 MPGSFEHLNSLTSLNLASNPFN 139
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 262 LKVLNLSHAELTELPVGISDLVSLQHLDLSESDISELPGELKALVNLKCLNL 313
++VL+L+H +LT L + L+ + HLDLS + + LP AL L+CL +
Sbjct: 443 VRVLHLAHKDLTVL-CHLEQLLLVTHLDLSHNRLRALP---PALAALRCLEV 490
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 262 LKVLNLSHAELTELPVGISDLVSLQHLDLSESDISELPGELKALVNLKCLNL 313
++VL+L+H +LT L + L+ + HLDLS + + LP AL L+CL +
Sbjct: 443 VRVLHLAHKDLTVL-CHLEQLLLVTHLDLSHNRLRALP---PALAALRCLEV 490
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 261 SLKVLNLSHAELTELPVGISDLVSLQHLDLSESDISELP--GELKALVNLKCLNLEWTRN 318
SLK L+LS + + L L+HLD S++ ++ +L NL L++ T
Sbjct: 398 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 457
Query: 319 LITIPRQLISNLSRLHVLRMFGAS 342
+ + + LS L VL+M G S
Sbjct: 458 RVAF-NGIFNGLSSLEVLKMAGNS 480
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 261 SLKVLNLSHAELTELPVGISDLVSLQHLDLSESDISELP--GELKALVNLKCLNLEWTRN 318
SLK L+LS + + L L+HLD S++ ++ +L NL L++ T
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433
Query: 319 LITIPRQLISNLSRLHVLRMFGAS 342
+ + + LS L VL+M G S
Sbjct: 434 RVAF-NGIFNGLSSLEVLKMAGNS 456
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 10/83 (12%)
Query: 223 DNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISDL 282
+N + L E+ L T++ + N L+ + + PSL+ LN+ LT+LP
Sbjct: 224 NNILEELPELQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTDLPELPQ-- 277
Query: 283 VSLQHLDLSE---SDISELPGEL 302
SL LD+SE S +SELP L
Sbjct: 278 -SLTFLDVSENIFSGLSELPPNL 299
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 213 WENVRRISLMDNQITNLSEVA--TCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHA 270
+ ++ +++L N+I + + A HLL L L+QN L I + F + L+VL+LS+
Sbjct: 298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN 357
Query: 271 ELTEL-PVGISDLVSLQHLDLSESDISELP 299
+ L L +L+ L L + + +P
Sbjct: 358 HIRALGDQSFLGLPNLKELALDTNQLKSVP 387
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 261 SLKVLNLSHAELTELPVGISDLVSLQHLDLSESDISELP--GELKALVNLKCLNLEWTRN 318
SLK L+LS + + L L+HLD S++ ++ +L NL L++ T
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433
Query: 319 LITIPRQLISNLSRLHVLRMFGAS 342
+ + + LS L VL+M G S
Sbjct: 434 RVAF-NGIFNGLSSLEVLKMAGNS 456
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 70/146 (47%), Gaps = 25/146 (17%)
Query: 215 NVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMI---------------HNDF---- 255
NV ++ L N++T++ +A ++L LFL++NK++ + HN
Sbjct: 67 NVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN 126
Query: 256 -FRFMPSLKVLNLSHAELTELPVGISDLVSLQHLDLSESDISELPGELKALVNLKCLNLE 314
+P L+ L L + ++T++ V +S L L L L ++ I + L L L+ NL
Sbjct: 127 GLVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQIRRI-VPLARLTKLQ--NLY 182
Query: 315 WTRNLITIPRQLISNLSRLHVLRMFG 340
++N I+ R L L L VL +F
Sbjct: 183 LSKNHISDLRAL-RGLKNLDVLELFS 207
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 261 SLKVLNLSHAELTELPVGISDLVSLQHLDLSESDISELP--GELKALVNLKCLNLEWTRN 318
SLK L+LS + + L L+HLD S++ ++ +L NL L++ T
Sbjct: 79 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 138
Query: 319 LITIPRQLISNLSRLHVLRMFGAS 342
+ + + LS L VL+M G S
Sbjct: 139 RVAF-NGIFNGLSSLEVLKMAGNS 161
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 26/135 (19%)
Query: 185 IVCDIEKEKENFLVYAGVGLTEAPEVKGWENVRRISLMDNQITNLSEVATCRHLLTLFLN 244
+V E E LV AG + ++ N+ ++L NQIT++S ++ L L++
Sbjct: 37 VVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIG 96
Query: 245 QNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISDLVSLQHLDLSESDISELPGELKA 304
NK+ I + +L +L+ L L+E +IS++ L
Sbjct: 97 TNKITDIS-------------------------ALQNLTNLRELYLNEDNISDI-SPLAN 130
Query: 305 LVNLKCLNLEWTRNL 319
L LNL NL
Sbjct: 131 LTKXYSLNLGANHNL 145
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 215 NVRRISLMDNQITNLSEVA--TCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAEL 272
N+ + L N+I ++ E A L L L+QN + +H FR + L L L L
Sbjct: 153 NLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNL 212
Query: 273 TELPVGI-SDLVSLQHLDLSES 293
+ LP + L SLQ+L L+++
Sbjct: 213 SMLPAEVLVPLRSLQYLRLNDN 234
>pdb|1CNT|1 Chain 1, Ciliary Neurotrophic Factor
pdb|1CNT|2 Chain 2, Ciliary Neurotrophic Factor
pdb|1CNT|3 Chain 3, Ciliary Neurotrophic Factor
pdb|1CNT|4 Chain 4, Ciliary Neurotrophic Factor
Length = 187
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 329 NLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELLGLKYLEVIS-FTLRSSHGLQS 387
+ L +L + N DG I G G L ++L GLK L+ +S +T+RS H L+
Sbjct: 122 QIEELMILLEYKIPRNEADGMP---INVGDGGLFEKKLWGLKVLQELSQWTVRSIHDLR- 177
Query: 388 VLSSHK 393
+SSH+
Sbjct: 178 FISSHQ 183
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,425,617
Number of Sequences: 62578
Number of extensions: 662037
Number of successful extensions: 1799
Number of sequences better than 100.0: 108
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 1561
Number of HSP's gapped (non-prelim): 228
length of query: 593
length of database: 14,973,337
effective HSP length: 104
effective length of query: 489
effective length of database: 8,465,225
effective search space: 4139495025
effective search space used: 4139495025
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)