Query 007687
Match_columns 593
No_of_seqs 410 out of 4176
Neff 9.9
Searched_HMMs 46136
Date Thu Mar 28 13:59:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007687.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007687hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.7E-59 3.7E-64 512.0 19.2 546 1-585 306-883 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.7E-38 3.6E-43 366.1 29.7 470 16-551 353-910 (1153)
3 PLN00113 leucine-rich repeat r 99.9 8E-24 1.7E-28 244.4 17.5 331 212-568 116-463 (968)
4 PLN03210 Resistant to P. syrin 99.9 3.3E-23 7.1E-28 239.6 20.0 314 214-551 589-947 (1153)
5 KOG0444 Cytoskeletal regulator 99.9 2.7E-26 5.9E-31 228.5 -5.1 328 194-551 34-379 (1255)
6 PLN00113 leucine-rich repeat r 99.9 3E-23 6.4E-28 239.6 18.2 352 194-568 120-486 (968)
7 KOG4194 Membrane glycoprotein 99.9 1.1E-22 2.4E-27 201.7 2.3 347 197-565 83-447 (873)
8 KOG0444 Cytoskeletal regulator 99.8 2.8E-23 6.1E-28 207.2 -3.6 288 209-541 98-393 (1255)
9 KOG4194 Membrane glycoprotein 99.8 1.5E-21 3.3E-26 193.7 4.4 311 214-566 78-425 (873)
10 KOG0472 Leucine-rich repeat pr 99.8 8.2E-21 1.8E-25 180.7 -4.2 318 212-545 181-539 (565)
11 KOG0472 Leucine-rich repeat pr 99.7 5.5E-20 1.2E-24 175.1 -10.4 244 209-485 63-308 (565)
12 KOG0618 Serine/threonine phosp 99.7 9.1E-19 2E-23 183.2 -3.5 233 284-546 242-488 (1081)
13 KOG4658 Apoptotic ATPase [Sign 99.7 2.9E-17 6.3E-22 181.0 7.6 324 195-554 526-867 (889)
14 PRK15387 E3 ubiquitin-protein 99.6 2.5E-15 5.5E-20 162.2 15.3 265 182-520 191-455 (788)
15 KOG0617 Ras suppressor protein 99.6 6.6E-18 1.4E-22 142.8 -4.3 165 204-387 23-190 (264)
16 PRK15370 E3 ubiquitin-protein 99.6 5.1E-15 1.1E-19 160.9 12.3 243 194-486 180-427 (754)
17 KOG0617 Ras suppressor protein 99.5 3E-16 6.6E-21 132.8 -3.7 145 197-344 38-186 (264)
18 KOG0618 Serine/threonine phosp 99.5 1.8E-15 3.8E-20 158.9 -1.4 269 214-522 219-488 (1081)
19 PRK15370 E3 ubiquitin-protein 99.5 1.5E-13 3.2E-18 149.7 12.0 221 214-484 178-398 (754)
20 PRK15387 E3 ubiquitin-protein 99.5 1.8E-13 4E-18 148.0 12.5 235 195-489 225-460 (788)
21 KOG4237 Extracellular matrix p 99.4 4.8E-15 1E-19 141.5 -3.3 146 195-342 49-199 (498)
22 KOG4237 Extracellular matrix p 99.3 1E-13 2.2E-18 132.7 -4.1 261 223-519 55-355 (498)
23 PF14580 LRR_9: Leucine-rich r 99.2 1.3E-11 2.9E-16 109.7 4.4 137 203-342 8-151 (175)
24 cd00116 LRR_RI Leucine-rich re 99.1 1.4E-11 3.1E-16 124.0 1.5 108 233-343 20-149 (319)
25 cd00116 LRR_RI Leucine-rich re 99.1 3.8E-11 8.2E-16 120.9 4.0 258 214-519 23-316 (319)
26 PF14580 LRR_9: Leucine-rich r 99.1 1.4E-10 3E-15 103.3 6.2 123 194-316 21-150 (175)
27 KOG0532 Leucine-rich repeat (L 99.0 4.6E-11 1E-15 119.8 -2.4 169 197-386 55-227 (722)
28 KOG0532 Leucine-rich repeat (L 98.9 7.1E-11 1.5E-15 118.5 -2.5 149 215-384 99-248 (722)
29 KOG3207 Beta-tubulin folding c 98.9 3.2E-10 6.8E-15 110.5 0.8 212 233-486 118-338 (505)
30 PF00931 NB-ARC: NB-ARC domain 98.9 2.8E-10 6.1E-15 112.6 0.4 111 13-141 156-284 (287)
31 KOG4341 F-box protein containi 98.8 1.5E-10 3.2E-15 112.1 -3.4 290 236-551 138-443 (483)
32 KOG1259 Nischarin, modulator o 98.8 4.8E-10 1.1E-14 103.9 -0.4 127 212-343 282-411 (490)
33 COG4886 Leucine-rich repeat (L 98.8 5.1E-09 1.1E-13 108.6 6.5 83 258-342 114-197 (394)
34 KOG3207 Beta-tubulin folding c 98.8 1.9E-09 4.1E-14 105.2 1.8 159 212-385 119-286 (505)
35 KOG4341 F-box protein containi 98.7 4.6E-10 1E-14 108.8 -4.3 281 215-527 139-443 (483)
36 KOG1259 Nischarin, modulator o 98.7 2E-09 4.3E-14 99.9 -0.6 134 234-386 282-415 (490)
37 PF13855 LRR_8: Leucine rich r 98.7 1.4E-08 3E-13 74.2 3.6 59 236-294 1-60 (61)
38 COG4886 Leucine-rich repeat (L 98.7 2.3E-08 4.9E-13 103.8 5.5 192 219-435 98-291 (394)
39 KOG2120 SCF ubiquitin ligase, 98.6 1.4E-09 3E-14 100.9 -5.8 184 308-520 187-373 (419)
40 PLN03150 hypothetical protein; 98.5 3E-07 6.6E-12 100.1 8.7 106 237-343 419-527 (623)
41 KOG2120 SCF ubiquitin ligase, 98.4 1.1E-08 2.4E-13 95.0 -3.8 182 261-486 186-375 (419)
42 PF13855 LRR_8: Leucine rich r 98.4 4.2E-07 9E-12 66.3 4.0 59 214-272 1-61 (61)
43 PLN03150 hypothetical protein; 98.3 1.5E-06 3.3E-11 94.7 8.9 108 215-323 419-532 (623)
44 KOG1859 Leucine-rich repeat pr 98.3 1.9E-08 4.2E-13 104.0 -6.2 102 235-343 186-291 (1096)
45 KOG1909 Ran GTPase-activating 98.2 3.6E-07 7.7E-12 87.2 1.4 94 416-520 208-308 (382)
46 KOG0531 Protein phosphatase 1, 98.2 2E-07 4.3E-12 97.0 -1.2 126 213-343 71-198 (414)
47 KOG0531 Protein phosphatase 1, 98.2 4.2E-07 9.2E-12 94.5 1.0 126 210-341 91-218 (414)
48 PF12799 LRR_4: Leucine Rich r 98.2 1.7E-06 3.7E-11 57.8 3.5 38 261-298 2-39 (44)
49 KOG2982 Uncharacterized conser 98.2 8.6E-07 1.9E-11 82.7 2.6 220 218-482 49-287 (418)
50 PF12799 LRR_4: Leucine Rich r 98.1 3.4E-06 7.5E-11 56.3 3.7 41 283-324 1-41 (44)
51 KOG1859 Leucine-rich repeat pr 98.1 1.3E-07 2.7E-12 98.2 -5.3 110 211-323 184-295 (1096)
52 KOG3665 ZYG-1-like serine/thre 98.0 1.5E-06 3.3E-11 94.4 1.3 79 236-315 122-204 (699)
53 KOG4579 Leucine-rich repeat (L 98.0 7.9E-07 1.7E-11 73.4 -0.8 92 233-325 50-141 (177)
54 PRK15386 type III secretion pr 98.0 3.1E-05 6.7E-10 77.7 9.5 63 257-324 49-112 (426)
55 KOG1644 U2-associated snRNP A' 97.9 1.5E-05 3.3E-10 70.5 5.0 103 214-316 42-150 (233)
56 KOG1909 Ran GTPase-activating 97.9 2.3E-06 5E-11 81.8 -0.7 120 365-486 180-310 (382)
57 PRK15386 type III secretion pr 97.8 4.4E-05 9.6E-10 76.7 7.8 78 214-302 52-134 (426)
58 KOG4579 Leucine-rich repeat (L 97.8 4.6E-06 9.9E-11 69.0 0.6 87 214-301 53-141 (177)
59 KOG2982 Uncharacterized conser 97.8 3.7E-06 8.1E-11 78.6 0.0 228 237-517 46-286 (418)
60 KOG3665 ZYG-1-like serine/thre 97.8 1.6E-05 3.6E-10 86.5 4.2 129 214-343 122-262 (699)
61 KOG1644 U2-associated snRNP A' 97.6 8.3E-05 1.8E-09 66.0 4.3 106 235-343 41-152 (233)
62 KOG1947 Leucine rich repeat pr 97.2 6.1E-05 1.3E-09 80.4 -0.5 37 512-548 403-441 (482)
63 KOG2739 Leucine-rich acidic nu 97.1 0.00019 4.2E-09 66.5 1.9 107 235-343 42-155 (260)
64 KOG2123 Uncharacterized conser 97.1 3.9E-05 8.5E-10 71.2 -3.0 104 235-341 18-127 (388)
65 KOG1947 Leucine rich repeat pr 97.0 0.00013 2.8E-09 77.8 -0.9 58 514-571 380-441 (482)
66 KOG2739 Leucine-rich acidic nu 96.8 0.00079 1.7E-08 62.5 2.6 104 213-317 42-154 (260)
67 KOG2123 Uncharacterized conser 96.5 0.00017 3.7E-09 67.1 -4.1 97 214-312 19-123 (388)
68 PF13306 LRR_5: Leucine rich r 96.4 0.0092 2E-07 50.7 6.7 58 233-292 32-90 (129)
69 COG5238 RNA1 Ran GTPase-activa 96.4 0.0007 1.5E-08 62.9 -0.3 16 417-432 210-225 (388)
70 PF00560 LRR_1: Leucine Rich R 96.1 0.0024 5.1E-08 35.4 0.8 16 285-300 2-17 (22)
71 PF00560 LRR_1: Leucine Rich R 96.1 0.0024 5.2E-08 35.4 0.8 21 261-281 1-21 (22)
72 COG5238 RNA1 Ran GTPase-activa 95.6 0.0094 2E-07 55.7 2.9 142 279-432 88-253 (388)
73 PF13306 LRR_5: Leucine rich r 95.5 0.039 8.5E-07 46.8 6.4 102 233-340 9-112 (129)
74 KOG3864 Uncharacterized conser 94.9 0.003 6.6E-08 56.4 -2.4 67 416-486 120-188 (221)
75 PF13504 LRR_7: Leucine rich r 94.4 0.024 5.2E-07 29.0 1.2 12 262-273 3-14 (17)
76 PF13504 LRR_7: Leucine rich r 94.3 0.029 6.2E-07 28.7 1.4 16 284-299 2-17 (17)
77 KOG0473 Leucine-rich repeat pr 94.2 0.0022 4.9E-08 58.3 -4.8 84 233-317 39-122 (326)
78 KOG0473 Leucine-rich repeat pr 93.9 0.0014 3E-08 59.6 -6.8 87 209-296 37-124 (326)
79 KOG3864 Uncharacterized conser 91.8 0.045 9.9E-07 49.1 -0.2 40 421-465 151-190 (221)
80 smart00369 LRR_TYP Leucine-ric 90.6 0.22 4.8E-06 28.6 2.0 18 283-300 2-19 (26)
81 smart00370 LRR Leucine-rich re 90.6 0.22 4.8E-06 28.6 2.0 18 283-300 2-19 (26)
82 smart00369 LRR_TYP Leucine-ric 88.0 0.48 1E-05 27.2 2.1 17 261-277 3-19 (26)
83 smart00370 LRR Leucine-rich re 88.0 0.48 1E-05 27.2 2.1 17 261-277 3-19 (26)
84 smart00367 LRR_CC Leucine-rich 83.0 0.71 1.5E-05 26.5 1.2 17 533-549 1-17 (26)
85 smart00364 LRR_BAC Leucine-ric 75.4 1.8 4E-05 24.9 1.2 17 284-300 3-19 (26)
86 PF12777 MT: Microtubule-bindi 66.8 26 0.00056 35.4 8.2 49 72-134 292-341 (344)
87 smart00365 LRR_SD22 Leucine-ri 65.9 5.1 0.00011 23.1 1.7 15 283-297 2-16 (26)
88 PF13516 LRR_6: Leucine Rich r 63.8 4 8.6E-05 22.7 1.0 14 283-296 2-15 (24)
89 PF14162 YozD: YozD-like prote 60.1 27 0.00058 23.6 4.4 40 121-166 13-52 (57)
90 KOG4308 LRR-containing protein 52.2 0.54 1.2E-05 49.5 -6.9 165 210-387 111-307 (478)
91 smart00368 LRR_RI Leucine rich 49.4 14 0.00031 21.5 1.8 12 261-272 3-14 (28)
92 PF08580 KAR9: Yeast cortical 30.2 2.7E+02 0.0058 31.1 9.1 48 42-90 235-284 (683)
93 KOG3763 mRNA export factor TAP 25.5 45 0.00097 35.3 2.0 63 233-296 215-283 (585)
94 PF02083 Urotensin_II: Urotens 21.8 31 0.00068 15.7 0.1 7 101-107 5-11 (12)
95 PRK05892 nucleoside diphosphat 21.7 5.2E+02 0.011 22.7 7.7 55 35-89 11-65 (158)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-59 Score=511.99 Aligned_cols=546 Identities=35% Similarity=0.543 Sum_probs=445.0
Q ss_pred CCCeeEEeeecCchhhhhhhhhhccccchhhchHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhc--cchhhhhhhHHH
Q 007687 1 MGNILQISISCDGAIFNRCLDCFLGKAAYIRNLQENVIALETELVKLIEAKNDVMARV---VNAER--QPMMTRLNKVQG 75 (593)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~l~~~~~~L~~~~~~i~~k~---~~a~~--~~~l~~~~~~~~ 75 (593)
||+...+++.|.+. +++|++|.+.||... ..+.. ++.+++++|+++| |+|.. |+.|++|+++++
T Consensus 306 m~~~~~~~v~~L~~--~eaW~LF~~~v~~~~-~~~~~--------~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~e 374 (889)
T KOG4658|consen 306 MGVDYPIEVECLTP--EEAWDLFQKKVGPNT-LGSHP--------DIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQE 374 (889)
T ss_pred ccCCccccccccCc--cccHHHHHHhhcccc-ccccc--------cHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHH
Confidence 78888899999998 999999999997542 22222 2566799999999 88876 779999999999
Q ss_pred HHHHHHHHHHH-----------HHHH---HhhChHHHHHhHhccccCCcccchhhhhHHHHHHhHHHHHHHHHhcCCCCC
Q 007687 76 WLSRVDAVKAE-----------ADEL---IRHGSQEIEKLCLGGYCSKNCHSSYKLGKQVAKKLRDKLIDCWIGEGFLTE 141 (593)
Q Consensus 76 W~~~l~~l~~~-----------~~~i---~~~~l~~~lk~Cf~~yc~s~fp~~~~i~~~~~~~~~~~Li~~WiaeGfi~~ 141 (593)
|+++.+.+.+. +..+ .+++||.++|.|| +|| |+|||||+|++ ++||.+||||||+++
T Consensus 375 W~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CF-Lyc-alFPED~~I~~-------e~Li~yWiaEGfi~~ 445 (889)
T KOG4658|consen 375 WRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCF-LYC-ALFPEDYEIKK-------EKLIEYWIAEGFIDP 445 (889)
T ss_pred HHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHH-Hhh-ccCCcccccch-------HHHHHHHHhccCcCc
Confidence 99999866432 2233 3458999999999 999 99999999999 999999999999999
Q ss_pred -chhhhHHHhHHHHHHHHHHhccccccC----CCceeehhHHHHHHHHHHhhcccccCcEEEEcCCcceecCCCCCCcce
Q 007687 142 -RDRFVEQNQGYHILGILLHACLLEEGG----DGKVKMHDVIRDMALWIVCDIEKEKENFLVYAGVGLTEAPEVKGWENV 216 (593)
Q Consensus 142 -~~~~~~e~~~~~~~~~L~~~~ll~~~~----~~~~~mhdli~dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 216 (593)
+++++++++|+.|+.+|+++++++... ..+|+|||+|||||.|++++.+.++++++..++.+....|+...+..+
T Consensus 446 ~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~ 525 (889)
T KOG4658|consen 446 LDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSV 525 (889)
T ss_pred cccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhhe
Confidence 789999999999999999999999973 489999999999999999987777788777777677778888888999
Q ss_pred eEEEeeccCcccccccccCCcccEEEccCcc--CcccchhhhccCCCCcEEEcCCC-CCCcCCcccCCCCCCcEeeCCCC
Q 007687 217 RRISLMDNQITNLSEVATCRHLLTLFLNQNK--LQMIHNDFFRFMPSLKVLNLSHA-ELTELPVGISDLVSLQHLDLSES 293 (593)
Q Consensus 217 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~--l~~~~~~~~~~l~~Lr~L~L~~~-~l~~lp~~i~~L~~L~~L~L~~~ 293 (593)
|++++.+|.+..++....+++|++|.+.+|. +..++..+|..++.||+|||++| .+.++|.+|+.|.+||||+++++
T Consensus 526 rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t 605 (889)
T KOG4658|consen 526 RRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT 605 (889)
T ss_pred eEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC
Confidence 9999999999999988888899999999996 78899999999999999999988 78899999999999999999999
Q ss_pred cCcccchhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccchhhhcCCCCCc
Q 007687 294 DISELPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELLGLKYLE 373 (593)
Q Consensus 294 ~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~ 373 (593)
.++.+|.++++|++|.+|++..+..+..+|. ++..|++|++|.+...... .+...+.++..|++|+
T Consensus 606 ~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~~~-------------~~~~~l~el~~Le~L~ 671 (889)
T KOG4658|consen 606 GISHLPSGLGNLKKLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSALS-------------NDKLLLKELENLEHLE 671 (889)
T ss_pred CccccchHHHHHHhhheeccccccccccccc-hhhhcccccEEEeeccccc-------------cchhhHHhhhcccchh
Confidence 9999999999999999999999977777755 4777999999999876521 1567888899999999
Q ss_pred eEEEEecCccchhhhhhcccccccceEEEecccCCCceeeeccccccccccceeeccccccceeeeccCCcccccC-CCC
Q 007687 374 VISFTLRSSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIAECKKLEELKMDYTGEVQQFV-FHS 452 (593)
Q Consensus 374 ~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~-l~~ 452 (593)
.++++..+......+.....+....+.+.+.++ .......++..+.+|+.|.|.+|...+. ...|........ |++
T Consensus 672 ~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~--~~~~~~~~~~~l~~L~~L~i~~~~~~e~-~~~~~~~~~~~~~f~~ 748 (889)
T KOG4658|consen 672 NLSITISSVLLLEDLLGMTRLRSLLQSLSIEGC--SKRTLISSLGSLGNLEELSILDCGISEI-VIEWEESLIVLLCFPN 748 (889)
T ss_pred hheeecchhHhHhhhhhhHHHHHHhHhhhhccc--ccceeecccccccCcceEEEEcCCCchh-hcccccccchhhhHHH
Confidence 999876555333444444444445555555442 2223335678899999999999987652 334443322233 678
Q ss_pred ccEEEEeCCCCCCCCcccccCCCCCEEeeccCccchhhcccCcccccccccCCCCCCccccee-cccccccCcccCCCCC
Q 007687 453 LKKVEIVNSYKLKDLTFLVFAPNLESIEVLGCVAMEEMVSVGKFAAVPEVTANLNPFAKLQYL-DLVGAINLKSIYWMPL 531 (593)
Q Consensus 453 L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L-~l~~c~~L~~l~~~~~ 531 (593)
+..+.+.+|...+++.|....|+|+.|.+..|..++++++...... .+......|+++..+ .+.+.+++.++...+.
T Consensus 749 l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~--~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l 826 (889)
T KOG4658|consen 749 LSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALL--ELKELILPFNKLEGLRMLCSLGGLPQLYWLPL 826 (889)
T ss_pred HHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhh--hcccEEecccccccceeeecCCCCceeEeccc
Confidence 8899999999999999988899999999999999999876422211 111124567777777 5777788888888888
Q ss_pred CCCccceeeeccCcCCCCCCCCCCcc--cc-cceEEeccccccccCccCchhhhccc
Q 007687 532 SFPLLKYLRAMNCHKLKKLPFDSNSA--RE-RNIVISGYTKWWDQLEWVDEATRNAF 585 (593)
Q Consensus 532 ~~~~L~~L~i~~C~~L~~lP~~~~~~--~l-~~l~I~~~~~~~~~l~w~~~~~~~~~ 585 (593)
.+++|+.+.+..||+++.+|...... .- ..+......+|.+.+.|.+++++..+
T Consensus 827 ~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 883 (889)
T KOG4658|consen 827 SFLKLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWLEGVYWEDELTKLRF 883 (889)
T ss_pred CccchhheehhcCcccccCccccccceeccccceeecCCccceeeEEehhhhhhhhc
Confidence 88999999999999999999877665 22 33444466677899999999998876
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.7e-38 Score=366.07 Aligned_cols=470 Identities=21% Similarity=0.253 Sum_probs=301.7
Q ss_pred hhhhhhhhccccchhhchHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhc--cchhhhhhhHHHHHHHHHHHHH----H
Q 007687 16 FNRCLDCFLGKAAYIRNLQENVIALETELVKLIEAKNDVMARV---VNAER--QPMMTRLNKVQGWLSRVDAVKA----E 86 (593)
Q Consensus 16 ~~~~~~~f~~~a~~~~~~~~~~~~l~~~~~~L~~~~~~i~~k~---~~a~~--~~~l~~~~~~~~W~~~l~~l~~----~ 86 (593)
.+++|++|+++||...... +++.+++++|+++| |+|.+ |+.|+. ++.++|+++++.+++ +
T Consensus 353 ~~ea~~LF~~~Af~~~~~~----------~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~~L~~~~~~~ 421 (1153)
T PLN03210 353 NELALEMFCRSAFKKNSPP----------DGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLPRLRNGLDGK 421 (1153)
T ss_pred HHHHHHHHHHHhcCCCCCc----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHHHHHhCccHH
Confidence 4889999999998543221 23455689999999 88876 756665 578999999988774 3
Q ss_pred H---HHHHhhChHH-HHHhHhccccCCcccchhhhhHHHHHHhHHHHHHHHHhcCCCCCchhhhHHHhHHHHHHHHHHhc
Q 007687 87 A---DELIRHGSQE-IEKLCLGGYCSKNCHSSYKLGKQVAKKLRDKLIDCWIGEGFLTERDRFVEQNQGYHILGILLHAC 162 (593)
Q Consensus 87 ~---~~i~~~~l~~-~lk~Cf~~yc~s~fp~~~~i~~~~~~~~~~~Li~~WiaeGfi~~~~~~~~e~~~~~~~~~L~~~~ 162 (593)
+ .++.+++|++ ..|.|| +|| |+||.++.++ .|..|+|.+.+.... -++.|+++|
T Consensus 422 I~~~L~~SYd~L~~~~~k~~F-l~i-a~ff~~~~~~----------~v~~~l~~~~~~~~~----------~l~~L~~ks 479 (1153)
T PLN03210 422 IEKTLRVSYDGLNNKKDKAIF-RHI-ACLFNGEKVN----------DIKLLLANSDLDVNI----------GLKNLVDKS 479 (1153)
T ss_pred HHHHHHHhhhccCccchhhhh-hee-hhhcCCCCHH----------HHHHHHHhcCCCchh----------ChHHHHhcC
Confidence 4 3445567876 489999 999 9999987654 377888887665321 288999999
Q ss_pred cccccCCCceeehhHHHHHHHHHHhhcc--cccCcEEEEcCCc----------------------cee--c--CCCCCCc
Q 007687 163 LLEEGGDGKVKMHDVIRDMALWIVCDIE--KEKENFLVYAGVG----------------------LTE--A--PEVKGWE 214 (593)
Q Consensus 163 ll~~~~~~~~~mhdli~dl~~~i~~~~~--~~~~~~~~~~~~~----------------------~~~--~--~~~~~~~ 214 (593)
|++.. .+.+.|||++|+||++++++++ +.++.++...... ..+ + ..+.+++
T Consensus 480 Li~~~-~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~ 558 (1153)
T PLN03210 480 LIHVR-EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMR 558 (1153)
T ss_pred CEEEc-CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCc
Confidence 99886 5689999999999999998753 2233444332110 000 0 0245566
Q ss_pred ceeEEEeeccCcc-------ccccc-cc-CCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCcccCCCCCC
Q 007687 215 NVRRISLMDNQIT-------NLSEV-AT-CRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISDLVSL 285 (593)
Q Consensus 215 ~lr~L~l~~~~~~-------~l~~~-~~-~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L 285 (593)
+++.|.+..+... .+|.. .. ..+||.|.+.++.++.+|.. | .+.+|++|+++++.+..+|.++..+++|
T Consensus 559 ~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~-f-~~~~L~~L~L~~s~l~~L~~~~~~l~~L 636 (1153)
T PLN03210 559 NLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSN-F-RPENLVKLQMQGSKLEKLWDGVHSLTGL 636 (1153)
T ss_pred cccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCc-C-CccCCcEEECcCccccccccccccCCCC
Confidence 7777777554321 12322 22 24588888888888888876 3 5678888888888888888888888888
Q ss_pred cEeeCCCC-cCcccchhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccchh
Q 007687 286 QHLDLSES-DISELPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVE 364 (593)
Q Consensus 286 ~~L~L~~~-~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (593)
++|+++++ .++.+|. ++.+++|++|++++|..+..+|.. ++++++|++|++.+|... ...+.
T Consensus 637 k~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L---------------~~Lp~ 699 (1153)
T PLN03210 637 RNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENL---------------EILPT 699 (1153)
T ss_pred CEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCc---------------CccCC
Confidence 88888877 5677774 777888888888888778888876 888888888888877642 11122
Q ss_pred hhcCCCCCceEEEEecCccchhhhhhcccccccceEEEecccCCCceeeec-----------------------------
Q 007687 365 ELLGLKYLEVISFTLRSSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVS----------------------------- 415 (593)
Q Consensus 365 ~L~~l~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----------------------------- 415 (593)
.+ ++++|+.|.++++.. +..+. ....+|+.|++.++. ...++..
T Consensus 700 ~i-~l~sL~~L~Lsgc~~--L~~~p---~~~~nL~~L~L~~n~-i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~ 772 (1153)
T PLN03210 700 GI-NLKSLYRLNLSGCSR--LKSFP---DISTNISWLDLDETA-IEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPL 772 (1153)
T ss_pred cC-CCCCCCEEeCCCCCC--ccccc---cccCCcCeeecCCCc-cccccccccccccccccccccchhhccccccccchh
Confidence 22 577888888775421 11111 123356666666553 1221100
Q ss_pred cccccccccceeeccccccceeeeccCCcccccCCCCccEEEEeCCCCCCCCcccccCCCCCEEeeccCccchhhcccC-
Q 007687 416 ALADLKQLNRLRIAECKKLEELKMDYTGEVQQFVFHSLKKVEIVNSYKLKDLTFLVFAPNLESIEVLGCVAMEEMVSVG- 494 (593)
Q Consensus 416 ~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~- 494 (593)
....+++|+.|++++|+.+..++ .+.+ .+++|+.|++++|..++.+|....+++|++|++++|..+..++...
T Consensus 773 ~~~~~~sL~~L~Ls~n~~l~~lP-~si~-----~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~ 846 (1153)
T PLN03210 773 MTMLSPSLTRLFLSDIPSLVELP-SSIQ-----NLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDIST 846 (1153)
T ss_pred hhhccccchheeCCCCCCccccC-hhhh-----CCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccccc
Confidence 00112466667776666555442 2232 3677777777777777777665567777777777777665543210
Q ss_pred -------cccccccccCCCCCCcccceecccccccCcccCCCCCCCCccceeeeccCcCCCCCC
Q 007687 495 -------KFAAVPEVTANLNPFAKLQYLDLVGAINLKSIYWMPLSFPLLKYLRAMNCHKLKKLP 551 (593)
Q Consensus 495 -------~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lP 551 (593)
....++.++..+..+++|+.|++.+|++++.++.....+++|+.+.+.+|++|+.++
T Consensus 847 nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 847 NISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred ccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 001122233344445555555555555555555555555555555555555555443
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=8e-24 Score=244.38 Aligned_cols=331 Identities=18% Similarity=0.149 Sum_probs=191.0
Q ss_pred CCcceeEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCC-cCCcccCCCCCCcEeeC
Q 007687 212 GWENVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELT-ELPVGISDLVSLQHLDL 290 (593)
Q Consensus 212 ~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~-~lp~~i~~L~~L~~L~L 290 (593)
.+++||+|++++|.+....+...+++|++|++++|.++...+..++.+++|++|+|++|.+. .+|..++++++|++|++
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 195 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence 44556666666655544333344566666666666654322222566666666666666554 45666666666666666
Q ss_pred CCCcCc-ccchhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccchhhhcCC
Q 007687 291 SESDIS-ELPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELLGL 369 (593)
Q Consensus 291 ~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l 369 (593)
++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++.+|.. ....+..++.+
T Consensus 196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l---------------~~~~p~~l~~l 259 (968)
T PLN00113 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNL---------------TGPIPSSLGNL 259 (968)
T ss_pred cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCcee---------------ccccChhHhCC
Confidence 666554 45666666666666666666444455554 66666666666665543 22345566777
Q ss_pred CCCceEEEEecCccc-hhhhhhcccccccceEEEecccCCCceeeeccccccccccceeeccccccceeeeccCCccccc
Q 007687 370 KYLEVISFTLRSSHG-LQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIAECKKLEELKMDYTGEVQQF 448 (593)
Q Consensus 370 ~~L~~L~i~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~ 448 (593)
++|+.|.++.+.... .+..+ ....+|+.|+++++.-....+ ..+..+++|+.|++.+|..... .+.+..
T Consensus 260 ~~L~~L~L~~n~l~~~~p~~l---~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~l~~n~~~~~-~~~~~~----- 329 (968)
T PLN00113 260 KNLQYLFLYQNKLSGPIPPSI---FSLQKLISLDLSDNSLSGEIP-ELVIQLQNLEILHLFSNNFTGK-IPVALT----- 329 (968)
T ss_pred CCCCEEECcCCeeeccCchhH---hhccCcCEEECcCCeeccCCC-hhHcCCCCCcEEECCCCccCCc-CChhHh-----
Confidence 777777776554322 22111 123467777777664332322 4456677777777777765443 233333
Q ss_pred CCCCccEEEEeCCCCCCCCc-ccccCCCCCEEeeccCccchhhccc-Cccccc-----------ccccCCCCCCccccee
Q 007687 449 VFHSLKKVEIVNSYKLKDLT-FLVFAPNLESIEVLGCVAMEEMVSV-GKFAAV-----------PEVTANLNPFAKLQYL 515 (593)
Q Consensus 449 ~l~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~~-----------~~~~~~~~~~~~L~~L 515 (593)
.+++|+.|++++|.....+| .++.+++|+.|++++|.....++.. .....+ ...+..+..+++|+.|
T Consensus 330 ~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L 409 (968)
T PLN00113 330 SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRV 409 (968)
T ss_pred cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEE
Confidence 36778888887774333444 3677778888888777543332210 000000 0122234567778888
Q ss_pred cccccccCcccCCCCCCCCccceeeeccCcCCCCCCCCCCcc-cccceEEeccc
Q 007687 516 DLVGAINLKSIYWMPLSFPLLKYLRAMNCHKLKKLPFDSNSA-RERNIVISGYT 568 (593)
Q Consensus 516 ~l~~c~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lP~~~~~~-~l~~l~I~~~~ 568 (593)
++.+|.-...++.....+++|+.|+++++.--..+|...... +|+.+.+.+|.
T Consensus 410 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 463 (968)
T PLN00113 410 RLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK 463 (968)
T ss_pred ECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCce
Confidence 887765444555555667888888888776544555544444 67778777664
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=3.3e-23 Score=239.61 Aligned_cols=314 Identities=21% Similarity=0.315 Sum_probs=216.5
Q ss_pred cceeEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCC-CCCcCCcccCCCCCCcEeeCCC
Q 007687 214 ENVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHA-ELTELPVGISDLVSLQHLDLSE 292 (593)
Q Consensus 214 ~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~-~l~~lp~~i~~L~~L~~L~L~~ 292 (593)
.++|.|.+.++.+..+|......+|+.|++.++.+..++.. +..+++|++|+|+++ .+..+| .++.+++|++|++++
T Consensus 589 ~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~-~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~ 666 (1153)
T PLN03210 589 PKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDG-VHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSD 666 (1153)
T ss_pred cccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccc-cccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecC
Confidence 47999999999999999887889999999999999998887 788999999999987 567787 588999999999999
Q ss_pred C-cCcccchhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCC-CCC---CCccccccCCcccchhhhc
Q 007687 293 S-DISELPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNA-FDG---ASEDSILFGGGALIVEELL 367 (593)
Q Consensus 293 ~-~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~-~~~---~~~~~~~~~~~~~~~~~L~ 367 (593)
| .+..+|..++++++|+.|++++|..++.+|.+ + ++++|++|++.+|.... ++. .+..-.+....-..++...
T Consensus 667 c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~ 744 (1153)
T PLN03210 667 CSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL 744 (1153)
T ss_pred CCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccc
Confidence 8 67899999999999999999999899999985 4 89999999999986531 111 1111111110000111111
Q ss_pred CCCCCceEEEEecCccchhhhh-----hcccccccceEEEecccCCCceeeeccccccccccceeeccccccceeeeccC
Q 007687 368 GLKYLEVISFTLRSSHGLQSVL-----SSHKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIAECKKLEELKMDYT 442 (593)
Q Consensus 368 ~l~~L~~L~i~~~~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~ 442 (593)
.+++|+.|.+.......+.... .......+|+.|+++++.....++ .+++++++|+.|++.+|..++.++...
T Consensus 745 ~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP-~si~~L~~L~~L~Ls~C~~L~~LP~~~- 822 (1153)
T PLN03210 745 RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP-SSIQNLHKLEHLEIENCINLETLPTGI- 822 (1153)
T ss_pred cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccC-hhhhCCCCCCEEECCCCCCcCeeCCCC-
Confidence 2344444444321110000000 001123467777777776555555 456777777777777777666543221
Q ss_pred CcccccCCCCccEEEEeCCCCCCC--------------------Cc-ccccCCCCCEEeeccCccchhhcccCccccccc
Q 007687 443 GEVQQFVFHSLKKVEIVNSYKLKD--------------------LT-FLVFAPNLESIEVLGCVAMEEMVSVGKFAAVPE 501 (593)
Q Consensus 443 ~~~~~~~l~~L~~L~l~~c~~l~~--------------------l~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 501 (593)
.+++|+.|++++|..++. +| +++.+++|+.|++.+|+.++.++.
T Consensus 823 ------~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~--------- 887 (1153)
T PLN03210 823 ------NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL--------- 887 (1153)
T ss_pred ------CccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCc---------
Confidence 255666666666655443 33 255678888888888887776644
Q ss_pred ccCCCCCCcccceecccccccCcccCCCC-------------CCCCccceeeeccCcCCCCCC
Q 007687 502 VTANLNPFAKLQYLDLVGAINLKSIYWMP-------------LSFPLLKYLRAMNCHKLKKLP 551 (593)
Q Consensus 502 ~~~~~~~~~~L~~L~l~~c~~L~~l~~~~-------------~~~~~L~~L~i~~C~~L~~lP 551 (593)
....+++|+.|++.+|++|..++... ..+|+...+.+.+|.+|..-+
T Consensus 888 ---~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~a 947 (1153)
T PLN03210 888 ---NISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEA 947 (1153)
T ss_pred ---ccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCchh
Confidence 56678999999999999998765422 135666778889998887644
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=2.7e-26 Score=228.55 Aligned_cols=328 Identities=23% Similarity=0.263 Sum_probs=232.4
Q ss_pred CcEEEEcCCcceecC-CCCCCcceeEEEeeccCccccccc-ccCCcccEEEccCccCc--ccchhhhccCCCCcEEEcCC
Q 007687 194 ENFLVYAGVGLTEAP-EVKGWENVRRISLMDNQITNLSEV-ATCRHLLTLFLNQNKLQ--MIHNDFFRFMPSLKVLNLSH 269 (593)
Q Consensus 194 ~~~~~~~~~~~~~~~-~~~~~~~lr~L~l~~~~~~~l~~~-~~~~~Lr~L~l~~~~l~--~~~~~~~~~l~~Lr~L~L~~ 269 (593)
-.++.+...++..+| ....+.++.+|++..|.+..+... ..++.||.+++..|.+. .+|.+ +-++..|.+|||++
T Consensus 34 ~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~d-iF~l~dLt~lDLSh 112 (1255)
T KOG0444|consen 34 MTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTD-IFRLKDLTILDLSH 112 (1255)
T ss_pred eeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCch-hcccccceeeecch
Confidence 468888888888888 466778999999999998886654 88999999999999864 78988 66899999999999
Q ss_pred CCCCcCCcccCCCCCCcEeeCCCCcCcccchh-hhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCC
Q 007687 270 AELTELPVGISDLVSLQHLDLSESDISELPGE-LKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDG 348 (593)
Q Consensus 270 ~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~ 348 (593)
|.+.+.|..+.+-+++-+|+|++|+|..+|.. +.+|+.|-.||+++| .+..+|+. +..|.+|++|.++++...
T Consensus 113 NqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ-~RRL~~LqtL~Ls~NPL~---- 186 (1255)
T KOG0444|consen 113 NQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQ-IRRLSMLQTLKLSNNPLN---- 186 (1255)
T ss_pred hhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHH-HHHHhhhhhhhcCCChhh----
Confidence 99999999999999999999999999999965 678999999999999 78999998 999999999999998763
Q ss_pred CCccccccCCcccchhhhcCCCCCceEEEEecCccchhhhhhcccccccceEEEecccCCCceeeeccccccccccceee
Q 007687 349 ASEDSILFGGGALIVEELLGLKYLEVISFTLRSSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRI 428 (593)
Q Consensus 349 ~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 428 (593)
...+..|..++.|++|+++.... .+.++..+.....+|..++++.+. +..++ +.+-.+++|+.|++
T Consensus 187 -----------hfQLrQLPsmtsL~vLhms~TqR-Tl~N~Ptsld~l~NL~dvDlS~N~-Lp~vP-ecly~l~~LrrLNL 252 (1255)
T KOG0444|consen 187 -----------HFQLRQLPSMTSLSVLHMSNTQR-TLDNIPTSLDDLHNLRDVDLSENN-LPIVP-ECLYKLRNLRRLNL 252 (1255)
T ss_pred -----------HHHHhcCccchhhhhhhcccccc-hhhcCCCchhhhhhhhhccccccC-CCcch-HHHhhhhhhheecc
Confidence 34555666677777777775432 233334444444577777777652 33333 56667778888888
Q ss_pred ccccccceeeeccCCcccccCCCCccEEEEeCCCCCCCCcc-cccCCCCCEEeeccCccchh-hccc-C----------c
Q 007687 429 AECKKLEELKMDYTGEVQQFVFHSLKKVEIVNSYKLKDLTF-LVFAPNLESIEVLGCVAMEE-MVSV-G----------K 495 (593)
Q Consensus 429 ~~~~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-l~~l~~L~~L~l~~c~~l~~-~~~~-~----------~ 495 (593)
+++...+ +... . ....+|+.|.++.+ +++.+|. +..++.|+.|.+.+|..--+ ++.. . .
T Consensus 253 S~N~ite-L~~~-~-----~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aa 324 (1255)
T KOG0444|consen 253 SGNKITE-LNMT-E-----GEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAA 324 (1255)
T ss_pred CcCceee-eecc-H-----HHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhh
Confidence 8776433 2211 1 12567777777777 6777665 66777777777766542111 1100 0 0
Q ss_pred ccccccccCCCCCCcccceecccccccCcccCCCCCCCCccceeeeccCcCCCCCC
Q 007687 496 FAAVPEVTANLNPFAKLQYLDLVGAINLKSIYWMPLSFPLLKYLRAMNCHKLKKLP 551 (593)
Q Consensus 496 ~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lP 551 (593)
...++-++..+..+++|+.|.++. ..|-.+|....-+|-|+.|++++.|+|.--|
T Consensus 325 nN~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 325 NNKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred ccccccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 001112233555666666666643 4566666666666666667766666665444
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.90 E-value=3e-23 Score=239.64 Aligned_cols=352 Identities=18% Similarity=0.180 Sum_probs=225.0
Q ss_pred CcEEEEcCCcceecCCCCCCcceeEEEeeccCccc-cccc-ccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCC
Q 007687 194 ENFLVYAGVGLTEAPEVKGWENVRRISLMDNQITN-LSEV-ATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAE 271 (593)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~-l~~~-~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~ 271 (593)
-+.+.+.++.+........++++++|++++|.+.. +|.. ..+++|++|++++|.+....+..++++++|++|+|++|.
T Consensus 120 L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 199 (968)
T PLN00113 120 LRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ 199 (968)
T ss_pred CCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCC
Confidence 35566666655432233456889999999998864 4443 788999999999998764433448899999999999998
Q ss_pred CC-cCCcccCCCCCCcEeeCCCCcCc-ccchhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCC-CCC
Q 007687 272 LT-ELPVGISDLVSLQHLDLSESDIS-ELPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNA-FDG 348 (593)
Q Consensus 272 l~-~lp~~i~~L~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~-~~~ 348 (593)
+. .+|..++++++|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++.++.... .+.
T Consensus 200 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~ 278 (968)
T PLN00113 200 LVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSGPIPP 278 (968)
T ss_pred CcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCeeeccCch
Confidence 77 57888999999999999999877 78888999999999999998655577776 8899999999998876531 000
Q ss_pred C------CccccccCC--cccchhhhcCCCCCceEEEEecCccc-hhhhhhcccccccceEEEecccCCCceeeeccccc
Q 007687 349 A------SEDSILFGG--GALIVEELLGLKYLEVISFTLRSSHG-LQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALAD 419 (593)
Q Consensus 349 ~------~~~~~~~~~--~~~~~~~L~~l~~L~~L~i~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 419 (593)
. +..-.+... ....+..+.++++|+.|++..+.... .+.. ....++|+.|+++++.-....+ ..+..
T Consensus 279 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~---~~~l~~L~~L~L~~n~l~~~~p-~~l~~ 354 (968)
T PLN00113 279 SIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA---LTSLPRLQVLQLWSNKFSGEIP-KNLGK 354 (968)
T ss_pred hHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh---HhcCCCCCEEECcCCCCcCcCC-hHHhC
Confidence 0 000000000 11222334444455555444332221 1111 1112345555555543322222 33455
Q ss_pred cccccceeeccccccceeeeccCCcccccCCCCccEEEEeCCCCCCCCcc-cccCCCCCEEeeccCccchhhcccCcccc
Q 007687 420 LKQLNRLRIAECKKLEELKMDYTGEVQQFVFHSLKKVEIVNSYKLKDLTF-LVFAPNLESIEVLGCVAMEEMVSVGKFAA 498 (593)
Q Consensus 420 l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-l~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 498 (593)
+++|+.|++++|..... .+.+.. .+++|+.|++.++.....+|. ++.+++|+.|++.+|.....++
T Consensus 355 ~~~L~~L~Ls~n~l~~~-~p~~~~-----~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p------- 421 (968)
T PLN00113 355 HNNLTVLDLSTNNLTGE-IPEGLC-----SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELP------- 421 (968)
T ss_pred CCCCcEEECCCCeeEee-CChhHh-----CcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECC-------
Confidence 55666666665543332 222222 255666666666633333332 6677778888887775443332
Q ss_pred cccccCCCCCCcccceecccccccCcccCCCCCCCCccceeeeccCcCCCCCCCCCCcccccceEEeccc
Q 007687 499 VPEVTANLNPFAKLQYLDLVGAINLKSIYWMPLSFPLLKYLRAMNCHKLKKLPFDSNSARERNIVISGYT 568 (593)
Q Consensus 499 ~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lP~~~~~~~l~~l~I~~~~ 568 (593)
..+..+++|+.|+++++.-...++.....+++|+.|++.+|.-...+|.......|+.+.+.++.
T Consensus 422 -----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~ 486 (968)
T PLN00113 422 -----SEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQ 486 (968)
T ss_pred -----hhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCc
Confidence 25677899999999987544455555567899999999999888888876654578888887664
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=1.1e-22 Score=201.66 Aligned_cols=347 Identities=18% Similarity=0.240 Sum_probs=183.6
Q ss_pred EEEcCCcceecC--CCCCCcceeEEEeeccCccccccc-ccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCC
Q 007687 197 LVYAGVGLTEAP--EVKGWENVRRISLMDNQITNLSEV-ATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELT 273 (593)
Q Consensus 197 ~~~~~~~~~~~~--~~~~~~~lr~L~l~~~~~~~l~~~-~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~ 273 (593)
+.++++.+..+. .+..+++++.+++..|.++.+|.+ ....+|..|+|.+|.++.+..+.+..++.||.|||+.|.|+
T Consensus 83 LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is 162 (873)
T KOG4194|consen 83 LDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLIS 162 (873)
T ss_pred eeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhh
Confidence 444444444432 234556666666666666666666 33445666666666666666555666666666666666666
Q ss_pred cCCc-ccCCCCCCcEeeCCCCcCcccc-hhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCC-----C
Q 007687 274 ELPV-GISDLVSLQHLDLSESDISELP-GELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNA-----F 346 (593)
Q Consensus 274 ~lp~-~i~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~-----~ 346 (593)
++|. ++..-.++++|+|++|.|+.+- ..+..+.+|.+|.++.| .++.+|..++++|++|+.|++..+.... |
T Consensus 163 ~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~irive~ltF 241 (873)
T KOG4194|consen 163 EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTF 241 (873)
T ss_pred cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhccccceeeehhhhh
Confidence 6644 4555566666666666666554 33555666666666666 5666666556666666666666555421 0
Q ss_pred CCCCccccccCC----cccchhhhcCCCCCceEEEEecCccchh-hhhhcccccccceEEEecccCCCceeeeccccccc
Q 007687 347 DGASEDSILFGG----GALIVEELLGLKYLEVISFTLRSSHGLQ-SVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLK 421 (593)
Q Consensus 347 ~~~~~~~~~~~~----~~~~~~~L~~l~~L~~L~i~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~ 421 (593)
.|.-...++... ....-..+-.+.++++|++..+....+. .++ -....|+.|+++.+ .+..+..++....+
T Consensus 242 qgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~l---fgLt~L~~L~lS~N-aI~rih~d~Wsftq 317 (873)
T KOG4194|consen 242 QGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWL---FGLTSLEQLDLSYN-AIQRIHIDSWSFTQ 317 (873)
T ss_pred cCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccc---cccchhhhhccchh-hhheeecchhhhcc
Confidence 000000000000 0000111223334444444433332221 111 11224445555444 23333334444445
Q ss_pred cccceeeccccccceeeeccCCcccccCCCCccEEEEeCCCCCCCCcc--cccCCCCCEEeeccCccchhhcccCccccc
Q 007687 422 QLNRLRIAECKKLEELKMDYTGEVQQFVFHSLKKVEIVNSYKLKDLTF--LVFAPNLESIEVLGCVAMEEMVSVGKFAAV 499 (593)
Q Consensus 422 ~L~~L~l~~~~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 499 (593)
+|+.|+++.+...+ +.+..+. .++.|+.|.|+.+ .++.+.. +..+.+|++|++++|..-..+-+
T Consensus 318 kL~~LdLs~N~i~~-l~~~sf~-----~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~ls~~IED------- 383 (873)
T KOG4194|consen 318 KLKELDLSSNRITR-LDEGSFR-----VLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNELSWCIED------- 383 (873)
T ss_pred cceeEecccccccc-CChhHHH-----HHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCeEEEEEec-------
Confidence 55555555544322 2222222 2455555555555 4444332 44556677777766643222211
Q ss_pred ccccCCCCCCcccceecccccccCcccCCCCC-CCCccceeeeccCcCCCCCCCCCCcccccceEEe
Q 007687 500 PEVTANLNPFAKLQYLDLVGAINLKSIYWMPL-SFPLLKYLRAMNCHKLKKLPFDSNSARERNIVIS 565 (593)
Q Consensus 500 ~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~-~~~~L~~L~i~~C~~L~~lP~~~~~~~l~~l~I~ 565 (593)
-.....++|+|+.|.+.+ .+++.++.... .+++||+|++.+-+--.-=|..+....|+++.+.
T Consensus 384 --aa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 384 --AAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMN 447 (873)
T ss_pred --chhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhc
Confidence 112456789999999998 68888886543 5899999999886544444666666567777764
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=2.8e-23 Score=207.22 Aligned_cols=288 Identities=22% Similarity=0.235 Sum_probs=181.4
Q ss_pred CCCCCcceeEEEeeccCccccccc-ccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCcccCCCCCCcE
Q 007687 209 EVKGWENVRRISLMDNQITNLSEV-ATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISDLVSLQH 287 (593)
Q Consensus 209 ~~~~~~~lr~L~l~~~~~~~l~~~-~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~ 287 (593)
++-.+..+..|+++.|.+++.|.. ...+++-+|+|++|.+..||...|-++..|-+|||++|.+..+|..+.+|.+|++
T Consensus 98 diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~Lqt 177 (1255)
T KOG0444|consen 98 DIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQT 177 (1255)
T ss_pred hhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhh
Confidence 344455666666666666666654 5566666666666666666666666666666666666666666666666666666
Q ss_pred eeCCCCcCc-----ccchhhhccccCceeecccccc-ccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCccc
Q 007687 288 LDLSESDIS-----ELPGELKALVNLKCLNLEWTRN-LITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGAL 361 (593)
Q Consensus 288 L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~-l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 361 (593)
|+|++|.+. .+| .+++|++|.++++.. +..+|.+ +..|.+|..++++.+... .
T Consensus 178 L~Ls~NPL~hfQLrQLP----smtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS~N~Lp----------------~ 236 (1255)
T KOG0444|consen 178 LKLSNNPLNHFQLRQLP----SMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLSENNLP----------------I 236 (1255)
T ss_pred hhcCCChhhHHHHhcCc----cchhhhhhhcccccchhhcCCCc-hhhhhhhhhccccccCCC----------------c
Confidence 666666332 333 355666666666532 3456665 666666666666655432 3
Q ss_pred chhhhcCCCCCceEEEEecCccchhhhhhcccccccceEEEecccCCCceeeeccccccccccceeeccccccceeeecc
Q 007687 362 IVEELLGLKYLEVISFTLRSSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIAECKKLEELKMDY 441 (593)
Q Consensus 362 ~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~ 441 (593)
.+..+-++.+|+.|+++.+..+.+.... ....+|++|+++.+. +..++ +++..++.|++|...++...-+=.|+.
T Consensus 237 vPecly~l~~LrrLNLS~N~iteL~~~~---~~W~~lEtLNlSrNQ-Lt~LP-~avcKL~kL~kLy~n~NkL~FeGiPSG 311 (1255)
T KOG0444|consen 237 VPECLYKLRNLRRLNLSGNKITELNMTE---GEWENLETLNLSRNQ-LTVLP-DAVCKLTKLTKLYANNNKLTFEGIPSG 311 (1255)
T ss_pred chHHHhhhhhhheeccCcCceeeeeccH---HHHhhhhhhccccch-hccch-HHHhhhHHHHHHHhccCcccccCCccc
Confidence 4555667777777777766554432211 122367777777663 44444 677778888888887765322112333
Q ss_pred CCcccccCCCCccEEEEeCCCCCCCCcc-cccCCCCCEEeeccCccchhhcccCcccccccccCCCCCCcccceeccccc
Q 007687 442 TGEVQQFVFHSLKKVEIVNSYKLKDLTF-LVFAPNLESIEVLGCVAMEEMVSVGKFAAVPEVTANLNPFAKLQYLDLVGA 520 (593)
Q Consensus 442 ~~~~~~~~l~~L~~L~l~~c~~l~~l~~-l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 520 (593)
++ .+.+|+.+...++ .++-+|- +..++.|+.|.++.|..++ + +..+.-+|-|+.|++...
T Consensus 312 IG-----KL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~NrLiT-L------------PeaIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 312 IG-----KLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHNRLIT-L------------PEAIHLLPDLKVLDLREN 372 (1255)
T ss_pred hh-----hhhhhHHHHhhcc-ccccCchhhhhhHHHHHhcccccceee-c------------hhhhhhcCCcceeeccCC
Confidence 44 3777888877777 6776664 8888999999998775443 2 336677899999999999
Q ss_pred ccCcccCCCCCCCCccceeee
Q 007687 521 INLKSIYWMPLSFPLLKYLRA 541 (593)
Q Consensus 521 ~~L~~l~~~~~~~~~L~~L~i 541 (593)
|+|.--|....+-.+|+.-+|
T Consensus 373 pnLVMPPKP~da~~~lefYNI 393 (1255)
T KOG0444|consen 373 PNLVMPPKPNDARKKLEFYNI 393 (1255)
T ss_pred cCccCCCCcchhhhcceeeec
Confidence 998755443223344444443
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.83 E-value=1.5e-21 Score=193.66 Aligned_cols=311 Identities=20% Similarity=0.228 Sum_probs=221.7
Q ss_pred cceeEEEeeccCccccccc--ccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcC-CcccCCCCCCcEeeC
Q 007687 214 ENVRRISLMDNQITNLSEV--ATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTEL-PVGISDLVSLQHLDL 290 (593)
Q Consensus 214 ~~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~L 290 (593)
+..+.|++++|.+.++... .++++|+.+.+..|.++.+|.. .....+|+.|+|.+|.|.++ .+++..++.||.|||
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f-~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRF-GHESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccc-cccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 5678899999999886554 8999999999999999999983 34456699999999999988 457899999999999
Q ss_pred CCCcCcccc-hhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccchhhhcCC
Q 007687 291 SESDISELP-GELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELLGL 369 (593)
Q Consensus 291 ~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l 369 (593)
+.|.|+++| .++..-.++++|++++| .++.+-.+.+..+.+|.+|.++.+....+ .+..+++|
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrNrittL---------------p~r~Fk~L 220 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRNRITTL---------------PQRSFKRL 220 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeeccc-cccccccccccccchheeeecccCccccc---------------CHHHhhhc
Confidence 999999988 44666689999999999 67888777799999999999999887522 23334445
Q ss_pred CCCceEEEEecCc------------------------cchhhhhhcccccccceEEEecccCCCceeeeccccccccccc
Q 007687 370 KYLEVISFTLRSS------------------------HGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLKQLNR 425 (593)
Q Consensus 370 ~~L~~L~i~~~~~------------------------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 425 (593)
++|+.|++..+.. ..+..- ..-....++.|+|..+. +..+.-..+-++..|+.
T Consensus 221 ~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG--~Fy~l~kme~l~L~~N~-l~~vn~g~lfgLt~L~~ 297 (873)
T KOG4194|consen 221 PKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDG--AFYGLEKMEHLNLETNR-LQAVNEGWLFGLTSLEQ 297 (873)
T ss_pred chhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCc--ceeeecccceeecccch-hhhhhcccccccchhhh
Confidence 5555555443322 211110 00112356666666552 23333345667788888
Q ss_pred eeeccccccceeeeccCCcccccCCCCccEEEEeCCCCCCCCcc--cccCCCCCEEeeccCccchhhcccCccccccccc
Q 007687 426 LRIAECKKLEELKMDYTGEVQQFVFHSLKKVEIVNSYKLKDLTF--LVFAPNLESIEVLGCVAMEEMVSVGKFAAVPEVT 503 (593)
Q Consensus 426 L~l~~~~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 503 (593)
|+++.+...+--...|. ..++|+.|+|+++ .++.++. +..|..|++|.+++|. +..+-+
T Consensus 298 L~lS~NaI~rih~d~Ws------ftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e----------- 358 (873)
T KOG4194|consen 298 LDLSYNAIQRIHIDSWS------FTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHNS-IDHLAE----------- 358 (873)
T ss_pred hccchhhhheeecchhh------hcccceeEecccc-ccccCChhHHHHHHHhhhhcccccc-hHHHHh-----------
Confidence 88887765442234454 3788999999888 7888775 6677889999998874 333322
Q ss_pred CCCCCCcccceecccccccCcccCCC-----CCCCCccceeeeccCcCCCCCCCCC-Ccc-cccceEEec
Q 007687 504 ANLNPFAKLQYLDLVGAINLKSIYWM-----PLSFPLLKYLRAMNCHKLKKLPFDS-NSA-RERNIVISG 566 (593)
Q Consensus 504 ~~~~~~~~L~~L~l~~c~~L~~l~~~-----~~~~~~L~~L~i~~C~~L~~lP~~~-~~~-~l~~l~I~~ 566 (593)
..+.++.+|++|+|+.. .+ +|..+ ...+|+|++|.+.| .+++++|..- ..+ .|+.+.+.+
T Consensus 359 ~af~~lssL~~LdLr~N-~l-s~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~ 425 (873)
T KOG4194|consen 359 GAFVGLSSLHKLDLRSN-EL-SWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGD 425 (873)
T ss_pred hHHHHhhhhhhhcCcCC-eE-EEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCC
Confidence 14567899999999873 23 22222 22389999999988 5899999643 332 577777643
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.77 E-value=8.2e-21 Score=180.67 Aligned_cols=318 Identities=17% Similarity=0.180 Sum_probs=182.4
Q ss_pred CCcceeEEEeeccCccccccc-ccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCcccC-CCCCCcEee
Q 007687 212 GWENVRRISLMDNQITNLSEV-ATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGIS-DLVSLQHLD 289 (593)
Q Consensus 212 ~~~~lr~L~l~~~~~~~l~~~-~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~-~L~~L~~L~ 289 (593)
.++++++|+...|-+..+|.. +.+.+|..|++..|++..+|+ |.++..|..|.+..|.++.+|..++ ++.+|.+||
T Consensus 181 ~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLD 258 (565)
T KOG0472|consen 181 AMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLD 258 (565)
T ss_pred HHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeee
Confidence 356666666666666666654 666666666666666666664 6666666666666666666666554 666777777
Q ss_pred CCCCcCcccchhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCC--------------------
Q 007687 290 LSESDISELPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGA-------------------- 349 (593)
Q Consensus 290 L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~-------------------- 349 (593)
++.|+++++|.+++.|++|.+||+++| .++.+|.+ +|+| .|+.|.+.|+...++.++
T Consensus 259 LRdNklke~Pde~clLrsL~rLDlSNN-~is~Lp~s-Lgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~d 335 (565)
T KOG0472|consen 259 LRDNKLKEVPDEICLLRSLERLDLSNN-DISSLPYS-LGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDD 335 (565)
T ss_pred ccccccccCchHHHHhhhhhhhcccCC-ccccCCcc-cccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccC
Confidence 777777777777777777777777766 56666665 6666 666666666654311110
Q ss_pred -C---ccccc-cC-CcccchhhhcCCCCCceEEEEecCccchhhhhhcccccccceEEEecccCCCceeeeccccccccc
Q 007687 350 -S---EDSIL-FG-GGALIVEELLGLKYLEVISFTLRSSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLKQL 423 (593)
Q Consensus 350 -~---~~~~~-~~-~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L 423 (593)
+ +.... .. ...........+.+.+.|+++....+.++.-........-....+++.+. +..++ ..+..+..+
T Consensus 336 glS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNq-L~elP-k~L~~lkel 413 (565)
T KOG0472|consen 336 GLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQ-LCELP-KRLVELKEL 413 (565)
T ss_pred CCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccch-Hhhhh-hhhHHHHHH
Confidence 0 00000 00 01223334445566667776665555444322211111234455555442 11222 222223333
Q ss_pred cceeeccccccceeeeccCCcccccCCCCccEEEEeCCCCCCCCcc-cccCCCCCEEeeccCccchhhccc---------
Q 007687 424 NRLRIAECKKLEELKMDYTGEVQQFVFHSLKKVEIVNSYKLKDLTF-LVFAPNLESIEVLGCVAMEEMVSV--------- 493 (593)
Q Consensus 424 ~~L~l~~~~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-l~~l~~L~~L~l~~c~~l~~~~~~--------- 493 (593)
.+.-+..+.... ..+... ..+++|..|+++++ -+.++|. ++.+..|+.|+|+.+.. ..++.-
T Consensus 414 vT~l~lsnn~is-fv~~~l-----~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~NrF-r~lP~~~y~lq~lEt 485 (565)
T KOG0472|consen 414 VTDLVLSNNKIS-FVPLEL-----SQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFNRF-RMLPECLYELQTLET 485 (565)
T ss_pred HHHHHhhcCccc-cchHHH-----Hhhhcceeeecccc-hhhhcchhhhhhhhhheeccccccc-ccchHHHhhHHHHHH
Confidence 333333333222 122222 24788888888887 6777775 77777888888887742 222110
Q ss_pred --CcccccccccC-CCCCCcccceecccccccCcccCCCCCCCCccceeeeccCc
Q 007687 494 --GKFAAVPEVTA-NLNPFAKLQYLDLVGAINLKSIYWMPLSFPLLKYLRAMNCH 545 (593)
Q Consensus 494 --~~~~~~~~~~~-~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~L~~L~i~~C~ 545 (593)
.....+.++.. .+.++.+|.+|++.+ ..+..+|...++|.+|++|.+.|-|
T Consensus 486 llas~nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 486 LLASNNQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred HHhccccccccChHHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCc
Confidence 00011222222 377888999999987 6899999999999999999998865
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.70 E-value=5.5e-20 Score=175.09 Aligned_cols=244 Identities=25% Similarity=0.315 Sum_probs=166.8
Q ss_pred CCCCCcceeEEEeeccCccccccc-ccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCcccCCCCCCcE
Q 007687 209 EVKGWENVRRISLMDNQITNLSEV-ATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISDLVSLQH 287 (593)
Q Consensus 209 ~~~~~~~lr~L~l~~~~~~~l~~~-~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~ 287 (593)
+...+..+.++.+++|+...+|+. ..+..+..|+.+.|.+..+|+. ++.+..|+.|+.+++.+.++|++|+.+..|..
T Consensus 63 dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~-i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~d 141 (565)
T KOG0472|consen 63 DLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQ-IGSLISLVKLDCSSNELKELPDSIGRLLDLED 141 (565)
T ss_pred hhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHH-HhhhhhhhhhhccccceeecCchHHHHhhhhh
Confidence 455666788888888888877765 7777888888888888888877 67788888888888888888888888888888
Q ss_pred eeCCCCcCcccchhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccchhhhc
Q 007687 288 LDLSESDISELPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELL 367 (593)
Q Consensus 288 L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 367 (593)
|+..+|++.++|.+++++.+|..|++.++ .+..+|+..+ +|+.|++|+...+- -+..+++++
T Consensus 142 l~~~~N~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i-~m~~L~~ld~~~N~----------------L~tlP~~lg 203 (565)
T KOG0472|consen 142 LDATNNQISSLPEDMVNLSKLSKLDLEGN-KLKALPENHI-AMKRLKHLDCNSNL----------------LETLPPELG 203 (565)
T ss_pred hhccccccccCchHHHHHHHHHHhhcccc-chhhCCHHHH-HHHHHHhcccchhh----------------hhcCChhhc
Confidence 88888888888888888888888888888 6777777634 48888888766543 234667777
Q ss_pred CCCCCceEEEEecCccchhhhhhcccccccceEEEecccCCCceeeeccccccccccceeeccccccceeeeccCCcccc
Q 007687 368 GLKYLEVISFTLRSSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIAECKKLEELKMDYTGEVQQ 447 (593)
Q Consensus 368 ~l~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~ 447 (593)
.+.+|..|++..+....++.+.+ +..|.+|+++.+ .++.++.+-...+++|..|++..+...+ .|+-..
T Consensus 204 ~l~~L~~LyL~~Nki~~lPef~g----cs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLDLRdNklke--~Pde~c---- 272 (565)
T KOG0472|consen 204 GLESLELLYLRRNKIRFLPEFPG----CSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLDLRDNKLKE--VPDEIC---- 272 (565)
T ss_pred chhhhHHHHhhhcccccCCCCCc----cHHHHHHHhccc-HHHhhHHHHhcccccceeeecccccccc--CchHHH----
Confidence 77777777776655554443322 224444444433 2233333334456677777777665333 233332
Q ss_pred cCCCCccEEEEeCCCCCCCCcc-cccCCCCCEEeeccCc
Q 007687 448 FVFHSLKKVEIVNSYKLKDLTF-LVFAPNLESIEVLGCV 485 (593)
Q Consensus 448 ~~l~~L~~L~l~~c~~l~~l~~-l~~l~~L~~L~l~~c~ 485 (593)
.+.+|+.|+++++ .++.+|. +|++ +|+.|.+.+++
T Consensus 273 -lLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 273 -LLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred -HhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCCc
Confidence 2666777777776 5666554 6666 77777777765
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.69 E-value=9.1e-19 Score=183.16 Aligned_cols=233 Identities=22% Similarity=0.264 Sum_probs=111.2
Q ss_pred CCcEeeCCCCcCcccchhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccch
Q 007687 284 SLQHLDLSESDISELPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIV 363 (593)
Q Consensus 284 ~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (593)
+|+++++++++++.+|+.++.+.+|+.+++.+| .+..+|.. +..+++|+.|....|. -...+
T Consensus 242 nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N-~l~~lp~r-i~~~~~L~~l~~~~ne----------------l~yip 303 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSNLPEWIGACANLEALNANHN-RLVALPLR-ISRITSLVSLSAAYNE----------------LEYIP 303 (1081)
T ss_pred cceeeecchhhhhcchHHHHhcccceEecccch-hHHhhHHH-HhhhhhHHHHHhhhhh----------------hhhCC
Confidence 334444444444444444444455555554444 33444444 4444444444444443 23456
Q ss_pred hhhcCCCCCceEEEEecCccchhhhhhcccccccceEEEecccCCCceeeeccccccccccceeeccccccceeeeccCC
Q 007687 364 EELLGLKYLEVISFTLRSSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIAECKKLEELKMDYTG 443 (593)
Q Consensus 364 ~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~ 443 (593)
..+..++.|++|++..+....++...-.. ....++.|..+.+.. ...+-..=..++.|+.|++.++.......|-..
T Consensus 304 ~~le~~~sL~tLdL~~N~L~~lp~~~l~v-~~~~l~~ln~s~n~l-~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~- 380 (1081)
T KOG0618|consen 304 PFLEGLKSLRTLDLQSNNLPSLPDNFLAV-LNASLNTLNVSSNKL-STLPSYEENNHAALQELYLANNHLTDSCFPVLV- 380 (1081)
T ss_pred CcccccceeeeeeehhccccccchHHHhh-hhHHHHHHhhhhccc-cccccccchhhHHHHHHHHhcCcccccchhhhc-
Confidence 66777888888888876665554311100 001122222222210 111100112245666677766655444333332
Q ss_pred cccccCCCCccEEEEeCCCCCCCCcc--cccCCCCCEEeeccCccchhhccc-Ccccc----------cccccCCCCCCc
Q 007687 444 EVQQFVFHSLKKVEIVNSYKLKDLTF--LVFAPNLESIEVLGCVAMEEMVSV-GKFAA----------VPEVTANLNPFA 510 (593)
Q Consensus 444 ~~~~~~l~~L~~L~l~~c~~l~~l~~--l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~----------~~~~~~~~~~~~ 510 (593)
.+.+|+.|+|+++ .+..+|. +.+++.|++|++++| .++.++.. ..++. +...| .+..+|
T Consensus 381 -----~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~ 452 (1081)
T KOG0618|consen 381 -----NFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLP 452 (1081)
T ss_pred -----cccceeeeeeccc-ccccCCHHHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcC
Confidence 2667777777776 6666664 666777777777776 33333320 00000 00111 334455
Q ss_pred ccceecccccccCcccCCCCC-CCCccceeeeccCcC
Q 007687 511 KLQYLDLVGAINLKSIYWMPL-SFPLLKYLRAMNCHK 546 (593)
Q Consensus 511 ~L~~L~l~~c~~L~~l~~~~~-~~~~L~~L~i~~C~~ 546 (593)
.|+.++++. .+|+.+..... ..|.|++|++.|-+.
T Consensus 453 qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 453 QLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred cceEEeccc-chhhhhhhhhhCCCcccceeeccCCcc
Confidence 666666643 45544332221 125666666666554
No 13
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.69 E-value=2.9e-17 Score=180.95 Aligned_cols=324 Identities=21% Similarity=0.278 Sum_probs=221.0
Q ss_pred cEEEEcCCcceecCCCCCCcceeEEEeeccC--cccccc--cccCCcccEEEccCcc-CcccchhhhccCCCCcEEEcCC
Q 007687 195 NFLVYAGVGLTEAPEVKGWENVRRISLMDNQ--ITNLSE--VATCRHLLTLFLNQNK-LQMIHNDFFRFMPSLKVLNLSH 269 (593)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~--~~~l~~--~~~~~~Lr~L~l~~~~-l~~~~~~~~~~l~~Lr~L~L~~ 269 (593)
+.++..++....++.....+.+++|-+.+|. +..++. +..++.||+|++++|. +.++|.. ++.+-+||||+|++
T Consensus 526 rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~ 604 (889)
T KOG4658|consen 526 RRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSD 604 (889)
T ss_pred eEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccC
Confidence 4566666677777766666789999999986 666666 4889999999999887 8889988 89999999999999
Q ss_pred CCCCcCCcccCCCCCCcEeeCCCCc-CcccchhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCC
Q 007687 270 AELTELPVGISDLVSLQHLDLSESD-ISELPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDG 348 (593)
Q Consensus 270 ~~l~~lp~~i~~L~~L~~L~L~~~~-i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~ 348 (593)
+.+..+|.++++|+.|.||++..+. ...+|..+..|.+||+|.+.... .......++.+.+|++|....+...
T Consensus 605 t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~--~~~~~~~l~el~~Le~L~~ls~~~~---- 678 (889)
T KOG4658|consen 605 TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA--LSNDKLLLKELENLEHLENLSITIS---- 678 (889)
T ss_pred CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc--cccchhhHHhhhcccchhhheeecc----
Confidence 9999999999999999999999984 45566666679999999998763 1111222555566666655544332
Q ss_pred CCccccccCCcccchhhhcCCCCCceEEEEec-CccchhhhhhcccccccceEEEecccCCCceee--ec--ccc-cccc
Q 007687 349 ASEDSILFGGGALIVEELLGLKYLEVISFTLR-SSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLE--VS--ALA-DLKQ 422 (593)
Q Consensus 349 ~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~--~l~-~l~~ 422 (593)
+......+..+..|+.+.+... ................+|+.|.+.+|...+... .. ... .+++
T Consensus 679 ----------s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~ 748 (889)
T KOG4658|consen 679 ----------SVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPN 748 (889)
T ss_pred ----------hhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHH
Confidence 2223344444444443322211 112333344444556688888888886543211 01 111 2668
Q ss_pred ccceeeccccccceeeeccCCcccccCCCCccEEEEeCCCCCCCCcc-cccCCCCCEEeeccCccchhhcccCccccccc
Q 007687 423 LNRLRIAECKKLEELKMDYTGEVQQFVFHSLKKVEIVNSYKLKDLTF-LVFAPNLESIEVLGCVAMEEMVSVGKFAAVPE 501 (593)
Q Consensus 423 L~~L~l~~~~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 501 (593)
+..+.+.+|...+ .+.|.. ..++|+.|.+..|..++++.+ ...+..++.+.+..+.. ....
T Consensus 749 l~~~~~~~~~~~r--~l~~~~-----f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~-~~l~---------- 810 (889)
T KOG4658|consen 749 LSKVSILNCHMLR--DLTWLL-----FAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKL-EGLR---------- 810 (889)
T ss_pred HHHHHhhcccccc--ccchhh-----ccCcccEEEEecccccccCCCHHHHhhhcccEEeccccc-ccce----------
Confidence 8888899998888 556654 489999999999988888654 55555566544433321 1110
Q ss_pred ccCCCCCCcccceecccccccCcccCCCC----CCCCccceeeeccC-cCCCCCCCCC
Q 007687 502 VTANLNPFAKLQYLDLVGAINLKSIYWMP----LSFPLLKYLRAMNC-HKLKKLPFDS 554 (593)
Q Consensus 502 ~~~~~~~~~~L~~L~l~~c~~L~~l~~~~----~~~~~L~~L~i~~C-~~L~~lP~~~ 554 (593)
.....++||++..+.+.. +.+..|.... +.+|.+.++.+.+| +.+..+|.+.
T Consensus 811 ~~~~l~~l~~i~~~~l~~-~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~ 867 (889)
T KOG4658|consen 811 MLCSLGGLPQLYWLPLSF-LKLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGE 867 (889)
T ss_pred eeecCCCCceeEecccCc-cchhheehhcCcccccCccccccceeccccceeecCCcc
Confidence 011455667766666665 3366665554 56889999999997 8999999874
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.64 E-value=2.5e-15 Score=162.24 Aligned_cols=265 Identities=21% Similarity=0.198 Sum_probs=162.3
Q ss_pred HHHHHhhcccccCcEEEEcCCcceecCCCCCCcceeEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCC
Q 007687 182 ALWIVCDIEKEKENFLVYAGVGLTEAPEVKGWENVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPS 261 (593)
Q Consensus 182 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~ 261 (593)
|....+++.......+.+.+..++.+|.... .+++.|++.+|.++.+|.. .++|++|++++|.++.+|.. .++
T Consensus 191 a~~r~~~Cl~~~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l----p~s 263 (788)
T PRK15387 191 VVQKMRACLNNGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL----PPG 263 (788)
T ss_pred HHHHHHHHhcCCCcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc----ccc
Confidence 3333333333345677788888888885322 5788999999988888753 57889999999988888752 468
Q ss_pred CcEEEcCCCCCCcCCcccCCCCCCcEeeCCCCcCcccchhhhccccCceeeccccccccccchhhcCCCccCceeeccCC
Q 007687 262 LKVLNLSHAELTELPVGISDLVSLQHLDLSESDISELPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGA 341 (593)
Q Consensus 262 Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~ 341 (593)
|+.|++++|.+..+|... .+|+.|++++|+++.+|.. +++|+.|++++| .+..+|.. . .+|+.|++.+|
T Consensus 264 L~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~l-p---~~L~~L~Ls~N 332 (788)
T PRK15387 264 LLELSIFSNPLTHLPALP---SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL-P---SELCKLWAYNN 332 (788)
T ss_pred cceeeccCCchhhhhhch---hhcCEEECcCCcccccccc---ccccceeECCCC-ccccCCCC-c---ccccccccccC
Confidence 888999998888887533 5688888999988888863 467889999888 67777752 2 35667777766
Q ss_pred CCCCCCCCCccccccCCcccchhhhcCCCCCceEEEEecCccchhhhhhcccccccceEEEecccCCCceeeeccccccc
Q 007687 342 SHNAFDGASEDSILFGGGALIVEELLGLKYLEVISFTLRSSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLK 421 (593)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~ 421 (593)
.... +..+ ..+|+.|+++.+....++.. ..+|+.|+++++. +..++ . .+.
T Consensus 333 ~L~~-----------------LP~l--p~~Lq~LdLS~N~Ls~LP~l------p~~L~~L~Ls~N~-L~~LP--~--l~~ 382 (788)
T PRK15387 333 QLTS-----------------LPTL--PSGLQELSVSDNQLASLPTL------PSELYKLWAYNNR-LTSLP--A--LPS 382 (788)
T ss_pred cccc-----------------cccc--ccccceEecCCCccCCCCCC------Ccccceehhhccc-cccCc--c--ccc
Confidence 5430 1111 13567777776655544432 2355555555542 22222 1 123
Q ss_pred cccceeeccccccceeeeccCCcccccCCCCccEEEEeCCCCCCCCcccccCCCCCEEeeccCccchhhcccCccccccc
Q 007687 422 QLNRLRIAECKKLEELKMDYTGEVQQFVFHSLKKVEIVNSYKLKDLTFLVFAPNLESIEVLGCVAMEEMVSVGKFAAVPE 501 (593)
Q Consensus 422 ~L~~L~l~~~~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 501 (593)
+|+.|++++|.... + +. .+++|+.|+++++ .++.+|.+ ..+|+.|++++|. ++.++.
T Consensus 383 ~L~~LdLs~N~Lt~-L-P~--------l~s~L~~LdLS~N-~LssIP~l--~~~L~~L~Ls~Nq-Lt~LP~--------- 439 (788)
T PRK15387 383 GLKELIVSGNRLTS-L-PV--------LPSELKELMVSGN-RLTSLPML--PSGLLSLSVYRNQ-LTRLPE--------- 439 (788)
T ss_pred ccceEEecCCcccC-C-CC--------cccCCCEEEccCC-cCCCCCcc--hhhhhhhhhccCc-ccccCh---------
Confidence 56666666654221 1 11 1345666666666 45555532 2356666666553 223322
Q ss_pred ccCCCCCCcccceeccccc
Q 007687 502 VTANLNPFAKLQYLDLVGA 520 (593)
Q Consensus 502 ~~~~~~~~~~L~~L~l~~c 520 (593)
.+..+++|+.|+++++
T Consensus 440 ---sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 440 ---SLIHLSSETTVNLEGN 455 (788)
T ss_pred ---HHhhccCCCeEECCCC
Confidence 4445666666666664
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.63 E-value=6.6e-18 Score=142.78 Aligned_cols=165 Identities=23% Similarity=0.384 Sum_probs=146.4
Q ss_pred ceecCCCCCCcceeEEEeeccCccccccc-ccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCcccCCC
Q 007687 204 LTEAPEVKGWENVRRISLMDNQITNLSEV-ATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISDL 282 (593)
Q Consensus 204 ~~~~~~~~~~~~lr~L~l~~~~~~~l~~~-~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L 282 (593)
+.++|....++++++|.++.|.+..+|+. ..+.+|++|.+++|.++++|.. ++.++.||.|++.-|.+..+|..||.+
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmnrl~~lprgfgs~ 101 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMNRLNILPRGFGSF 101 (264)
T ss_pred HhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchhhhhcCccccCCC
Confidence 45567777788999999999999998876 8999999999999999999998 899999999999999999999999999
Q ss_pred CCCcEeeCCCCcCc--ccchhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcc
Q 007687 283 VSLQHLDLSESDIS--ELPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGA 360 (593)
Q Consensus 283 ~~L~~L~L~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 360 (593)
+-|++||+.+|++. .+|..+--++.|+.|++++| ..+.+|++ ++++++||.|.+.++...
T Consensus 102 p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~d-vg~lt~lqil~lrdndll---------------- 163 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPD-VGKLTNLQILSLRDNDLL---------------- 163 (264)
T ss_pred chhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChh-hhhhcceeEEeeccCchh----------------
Confidence 99999999999776 79988889999999999999 78889998 999999999999887653
Q ss_pred cchhhhcCCCCCceEEEEecCccchhh
Q 007687 361 LIVEELLGLKYLEVISFTLRSSHGLQS 387 (593)
Q Consensus 361 ~~~~~L~~l~~L~~L~i~~~~~~~~~~ 387 (593)
..+.+++.++.|+.|+|.++..+.++-
T Consensus 164 ~lpkeig~lt~lrelhiqgnrl~vlpp 190 (264)
T KOG0617|consen 164 SLPKEIGDLTRLRELHIQGNRLTVLPP 190 (264)
T ss_pred hCcHHHHHHHHHHHHhcccceeeecCh
Confidence 478889999999999999887766554
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.59 E-value=5.1e-15 Score=160.89 Aligned_cols=243 Identities=23% Similarity=0.234 Sum_probs=147.5
Q ss_pred CcEEEEcCCcceecCCCCCCcceeEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCC
Q 007687 194 ENFLVYAGVGLTEAPEVKGWENVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELT 273 (593)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~ 273 (593)
..-+.+.+.+++.+|... .+.++.|++++|.++.+|... ..+|++|++++|.++.+|..+ ..+|+.|+|++|.+.
T Consensus 180 ~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~LtsLP~~l---~~~L~~L~Ls~N~L~ 254 (754)
T PRK15370 180 KTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENL-QGNIKTLYANSNQLTSIPATL---PDTIQEMELSINRIT 254 (754)
T ss_pred ceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCccccCChhh---hccccEEECcCCccC
Confidence 344556666667776532 257888888888888777642 257888888888888777652 246888888888888
Q ss_pred cCCcccCCCCCCcEeeCCCCcCcccchhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccc
Q 007687 274 ELPVGISDLVSLQHLDLSESDISELPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDS 353 (593)
Q Consensus 274 ~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~ 353 (593)
.+|..+. .+|++|++++|+++.+|..+. .+|++|++++| .++.+|.. +. ++|++|++.+|....
T Consensus 255 ~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~-lp--~sL~~L~Ls~N~Lt~-------- 318 (754)
T PRK15370 255 ELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDN-SIRTLPAH-LP--SGITHLNVQSNSLTA-------- 318 (754)
T ss_pred cCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCC-ccccCccc-ch--hhHHHHHhcCCcccc--------
Confidence 8877664 478888888888888877654 47888888887 67777764 32 467777777765431
Q ss_pred cccCCcccchhhhcCCCCCceEEEEecCccchhhhhhcccccccceEEEecccCCCceeeeccccccccccceeeccccc
Q 007687 354 ILFGGGALIVEELLGLKYLEVISFTLRSSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIAECKK 433 (593)
Q Consensus 354 ~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 433 (593)
.+..+ .++|+.|.+..+....++.. +.++|+.|+++++. +..++ ..+ .++|+.|+|++|..
T Consensus 319 --------LP~~l--~~sL~~L~Ls~N~Lt~LP~~-----l~~sL~~L~Ls~N~-L~~LP-~~l--p~~L~~LdLs~N~L 379 (754)
T PRK15370 319 --------LPETL--PPGLKTLEAGENALTSLPAS-----LPPELQVLDVSKNQ-ITVLP-ETL--PPTITTLDVSRNAL 379 (754)
T ss_pred --------CCccc--cccceeccccCCccccCChh-----hcCcccEEECCCCC-CCcCC-hhh--cCCcCEEECCCCcC
Confidence 11111 14566666665554444321 12466667766653 22222 112 24666777766643
Q ss_pred cceeeeccCCcccccCCCCccEEEEeCCCCCCCCcc-----cccCCCCCEEeeccCcc
Q 007687 434 LEELKMDYTGEVQQFVFHSLKKVEIVNSYKLKDLTF-----LVFAPNLESIEVLGCVA 486 (593)
Q Consensus 434 ~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-----l~~l~~L~~L~l~~c~~ 486 (593)
. .+++. ...+|+.|+++++ ++..+|. .+.+|.+..|.+.+|+.
T Consensus 380 t-~LP~~--------l~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 380 T-NLPEN--------LPAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred C-CCCHh--------HHHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 2 22211 1235666666666 4555542 23346666666666643
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.52 E-value=3e-16 Score=132.80 Aligned_cols=145 Identities=29% Similarity=0.482 Sum_probs=132.3
Q ss_pred EEEcCCcceecC-CCCCCcceeEEEeeccCccccccc-ccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCC-
Q 007687 197 LVYAGVGLTEAP-EVKGWENVRRISLMDNQITNLSEV-ATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELT- 273 (593)
Q Consensus 197 ~~~~~~~~~~~~-~~~~~~~lr~L~l~~~~~~~l~~~-~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~- 273 (593)
+..+.+.++.+| ....+.+++.|++.+|.++++|.. +++++||.|.+.-|++..+|.+ |+.++.|++|||++|++.
T Consensus 38 LtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprg-fgs~p~levldltynnl~e 116 (264)
T KOG0617|consen 38 LTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRG-FGSFPALEVLDLTYNNLNE 116 (264)
T ss_pred hhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccc-cCCCchhhhhhcccccccc
Confidence 455666666665 677888999999999999999987 9999999999999999999998 899999999999999887
Q ss_pred -cCCcccCCCCCCcEeeCCCCcCcccchhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCC
Q 007687 274 -ELPVGISDLVSLQHLDLSESDISELPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHN 344 (593)
Q Consensus 274 -~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 344 (593)
.+|..|-.+..|+-|.++.|.++-+|..+++|++|+.|.+++| .+-++|.+ ++.++.|++|++.++...
T Consensus 117 ~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn-dll~lpke-ig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 117 NSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN-DLLSLPKE-IGDLTRLRELHIQGNRLT 186 (264)
T ss_pred ccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC-chhhCcHH-HHHHHHHHHHhcccceee
Confidence 7899999999999999999999999999999999999999999 68889998 999999999999988764
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.50 E-value=1.8e-15 Score=158.91 Aligned_cols=269 Identities=21% Similarity=0.263 Sum_probs=168.4
Q ss_pred cceeEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCcccCCCCCCcEeeCCCC
Q 007687 214 ENVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISDLVSLQHLDLSES 293 (593)
Q Consensus 214 ~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~ 293 (593)
+++++|....|.+..+.......+|++++++.+.++.+| +.++.+.+|+.|+..+|.++.+|..+....+|++|++..|
T Consensus 219 ~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~n 297 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYN 297 (1081)
T ss_pred cchheeeeccCcceeeccccccccceeeecchhhhhcch-HHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhh
Confidence 577788888887775555566778888888888888888 5688888888888888888888888888888888888888
Q ss_pred cCcccchhhhccccCceeeccccccccccchhhcCCCcc-CceeeccCCCCCCCCCCCccccccCCcccchhhhcCCCCC
Q 007687 294 DISELPGELKALVNLKCLNLEWTRNLITIPRQLISNLSR-LHVLRMFGASHNAFDGASEDSILFGGGALIVEELLGLKYL 372 (593)
Q Consensus 294 ~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L 372 (593)
.++.+|.....++.|++|++..| .+..+|+..+..+.. |+.|+.+.+.....+. .+.. .+..|
T Consensus 298 el~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~---------~~e~------~~~~L 361 (1081)
T KOG0618|consen 298 ELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPS---------YEEN------NHAAL 361 (1081)
T ss_pred hhhhCCCcccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhcccccccc---------ccch------hhHHH
Confidence 88888888888888888888888 677888754444333 5555544433321110 0000 11122
Q ss_pred ceEEEEecCccchhhhhhcccccccceEEEecccCCCceeeeccccccccccceeeccccccceeeeccCCcccccCCCC
Q 007687 373 EVISFTLRSSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIAECKKLEELKMDYTGEVQQFVFHS 452 (593)
Q Consensus 373 ~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~l~~ 452 (593)
+.|.+..+..+. +.+.......+|+.|+|+.+ .+..++...+.+++.|++|+++|+.... + ++... .+..
T Consensus 362 q~LylanN~Ltd--~c~p~l~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSGNkL~~-L-p~tva-----~~~~ 431 (1081)
T KOG0618|consen 362 QELYLANNHLTD--SCFPVLVNFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSGNKLTT-L-PDTVA-----NLGR 431 (1081)
T ss_pred HHHHHhcCcccc--cchhhhccccceeeeeeccc-ccccCCHHHHhchHHhHHHhcccchhhh-h-hHHHH-----hhhh
Confidence 223333222111 01111122336666666655 2344555567777788888888876443 3 33322 2667
Q ss_pred ccEEEEeCCCCCCCCcccccCCCCCEEeeccCccchhhcccCcccccccccCCCCCCcccceeccccccc
Q 007687 453 LKKVEIVNSYKLKDLTFLVFAPNLESIEVLGCVAMEEMVSVGKFAAVPEVTANLNPFAKLQYLDLVGAIN 522 (593)
Q Consensus 453 L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 522 (593)
|+.|...++ .+..+|-+..+|.|+.++|+.|. +..+.-. .. -.-|+|++|++++.+.
T Consensus 432 L~tL~ahsN-~l~~fPe~~~l~qL~~lDlS~N~-L~~~~l~----------~~-~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 432 LHTLRAHSN-QLLSFPELAQLPQLKVLDLSCNN-LSEVTLP----------EA-LPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hHHHhhcCC-ceeechhhhhcCcceEEecccch-hhhhhhh----------hh-CCCcccceeeccCCcc
Confidence 777777666 67777777778888888887553 3332110 01 1116788888877554
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.48 E-value=1.5e-13 Score=149.66 Aligned_cols=221 Identities=19% Similarity=0.273 Sum_probs=143.5
Q ss_pred cceeEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCcccCCCCCCcEeeCCCC
Q 007687 214 ENVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISDLVSLQHLDLSES 293 (593)
Q Consensus 214 ~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~ 293 (593)
.+...|.+.++.++.+|... .++|+.|++++|.++.+|...+ .+|++|++++|.++.+|..+. .+|+.|++++|
T Consensus 178 ~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred cCceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCC
Confidence 35678999998888888642 3579999999999999998743 589999999999999998665 47999999999
Q ss_pred cCcccchhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccchhhhcCCCCCc
Q 007687 294 DISELPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELLGLKYLE 373 (593)
Q Consensus 294 ~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~ 373 (593)
.+..+|..+. .+|+.|++++| .+..+|.. +. ++|++|++++|....+ +..+. .+|+
T Consensus 252 ~L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~-l~--~sL~~L~Ls~N~Lt~L----------------P~~lp--~sL~ 307 (754)
T PRK15370 252 RITELPERLP--SALQSLDLFHN-KISCLPEN-LP--EELRYLSVYDNSIRTL----------------PAHLP--SGIT 307 (754)
T ss_pred ccCcCChhHh--CCCCEEECcCC-ccCccccc-cC--CCCcEEECCCCccccC----------------cccch--hhHH
Confidence 9999998765 58999999988 77888876 43 5899999998765311 11111 2455
Q ss_pred eEEEEecCccchhhhhhcccccccceEEEecccCCCceeeeccccccccccceeeccccccceeeeccCCcccccCCCCc
Q 007687 374 VISFTLRSSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIAECKKLEELKMDYTGEVQQFVFHSL 453 (593)
Q Consensus 374 ~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~l~~L 453 (593)
.|+++.+....++. ....+|+.|.++++. +..++ ..+ .++|+.|++++|... .+ |.. .+++|
T Consensus 308 ~L~Ls~N~Lt~LP~-----~l~~sL~~L~Ls~N~-Lt~LP-~~l--~~sL~~L~Ls~N~L~-~L-P~~-------lp~~L 369 (754)
T PRK15370 308 HLNVQSNSLTALPE-----TLPPGLKTLEAGENA-LTSLP-ASL--PPELQVLDVSKNQIT-VL-PET-------LPPTI 369 (754)
T ss_pred HHHhcCCccccCCc-----cccccceeccccCCc-cccCC-hhh--cCcccEEECCCCCCC-cC-Chh-------hcCCc
Confidence 55565544443322 112356666666553 22222 112 246666666665422 12 111 13456
Q ss_pred cEEEEeCCCCCCCCcccccCCCCCEEeeccC
Q 007687 454 KKVEIVNSYKLKDLTFLVFAPNLESIEVLGC 484 (593)
Q Consensus 454 ~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c 484 (593)
+.|+|++| .++.+|.- -.++|+.|++++|
T Consensus 370 ~~LdLs~N-~Lt~LP~~-l~~sL~~LdLs~N 398 (754)
T PRK15370 370 TTLDVSRN-ALTNLPEN-LPAALQIMQASRN 398 (754)
T ss_pred CEEECCCC-cCCCCCHh-HHHHHHHHhhccC
Confidence 66666666 45554431 1124666666665
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.48 E-value=1.8e-13 Score=148.00 Aligned_cols=235 Identities=22% Similarity=0.200 Sum_probs=176.3
Q ss_pred cEEEEcCCcceecCCCCCCcceeEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCc
Q 007687 195 NFLVYAGVGLTEAPEVKGWENVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTE 274 (593)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~ 274 (593)
..+.+.++.++.+|.. .++|++|++++|.++.+|.. .++|+.|++++|.++.+|.. +..|+.|++++|.++.
T Consensus 225 ~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~L~~Lp~l----p~~L~~L~Ls~N~Lt~ 296 (788)
T PRK15387 225 TTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTHLPAL----PSGLCKLWIFGNQLTS 296 (788)
T ss_pred CEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc--ccccceeeccCCchhhhhhc----hhhcCEEECcCCcccc
Confidence 5577778888888853 47999999999999998864 46899999999999888763 3678999999999999
Q ss_pred CCcccCCCCCCcEeeCCCCcCcccchhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCcccc
Q 007687 275 LPVGISDLVSLQHLDLSESDISELPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSI 354 (593)
Q Consensus 275 lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 354 (593)
+|.. +++|++|++++|.++.+|... .+|+.|++++| .++.+|. + ..+|++|+++++....+
T Consensus 297 LP~~---p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N-~L~~LP~--l--p~~Lq~LdLS~N~Ls~L-------- 357 (788)
T PRK15387 297 LPVL---PPGLQELSVSDNQLASLPALP---SELCKLWAYNN-QLTSLPT--L--PSGLQELSVSDNQLASL-------- 357 (788)
T ss_pred cccc---ccccceeECCCCccccCCCCc---ccccccccccC-ccccccc--c--ccccceEecCCCccCCC--------
Confidence 9863 478999999999999988633 46888999998 6778886 2 25899999998876411
Q ss_pred ccCCcccchhhhcCCCCCceEEEEecCccchhhhhhcccccccceEEEecccCCCceeeeccccccccccceeecccccc
Q 007687 355 LFGGGALIVEELLGLKYLEVISFTLRSSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIAECKKL 434 (593)
Q Consensus 355 ~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 434 (593)
+ .+ ..+|+.|.++.+....++.. ..+|+.|+++++. +..++. ..++|+.|++++|...
T Consensus 358 --------P-~l--p~~L~~L~Ls~N~L~~LP~l------~~~L~~LdLs~N~-Lt~LP~----l~s~L~~LdLS~N~Ls 415 (788)
T PRK15387 358 --------P-TL--PSELYKLWAYNNRLTSLPAL------PSGLKELIVSGNR-LTSLPV----LPSELKELMVSGNRLT 415 (788)
T ss_pred --------C-CC--CcccceehhhccccccCccc------ccccceEEecCCc-ccCCCC----cccCCCEEEccCCcCC
Confidence 1 11 23566666766655555432 3478999998874 333331 1368999999998643
Q ss_pred ceeeeccCCcccccCCCCccEEEEeCCCCCCCCcc-cccCCCCCEEeeccCccchh
Q 007687 435 EELKMDYTGEVQQFVFHSLKKVEIVNSYKLKDLTF-LVFAPNLESIEVLGCVAMEE 489 (593)
Q Consensus 435 ~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-l~~l~~L~~L~l~~c~~l~~ 489 (593)
. + |. .+.+|+.|+++++ +++.+|. ++.+++|+.|+|++|+.-..
T Consensus 416 s-I-P~--------l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 416 S-L-PM--------LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred C-C-Cc--------chhhhhhhhhccC-cccccChHHhhccCCCeEECCCCCCCch
Confidence 2 3 22 2457899999998 7888875 78899999999999975433
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.43 E-value=4.8e-15 Score=141.54 Aligned_cols=146 Identities=28% Similarity=0.346 Sum_probs=110.5
Q ss_pred cEEEEcCCcceecCCCCCCcceeEEEeeccCccccccc--ccCCcccEEEccCccCcccchhhhccCCCCcEEEcCC-CC
Q 007687 195 NFLVYAGVGLTEAPEVKGWENVRRISLMDNQITNLSEV--ATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSH-AE 271 (593)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~-~~ 271 (593)
..+.+.+.+++++|.... .....|.+..|.|+.+|.. ..+++||.|+|++|.|+.|.++.|.+++.|-.|-+.+ |+
T Consensus 49 ~~VdCr~~GL~eVP~~LP-~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPANLP-PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK 127 (498)
T ss_pred ceEEccCCCcccCcccCC-CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence 455667777888875433 4667778888888888775 7788888888888888888887788888877766666 68
Q ss_pred CCcCCc-ccCCCCCCcEeeCCCCcCcccc-hhhhccccCceeeccccccccccchhhcCCCccCceeeccCCC
Q 007687 272 LTELPV-GISDLVSLQHLDLSESDISELP-GELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGAS 342 (593)
Q Consensus 272 l~~lp~-~i~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 342 (593)
|+.+|. .|++|..|+.|.+.-+++..++ ..+..|++|..|.+.+| .+..++.+.+..+.+++++++..+.
T Consensus 128 I~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 128 ITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCc
Confidence 888876 5788888888888888777655 55777888888888887 6777777667778888888777655
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.29 E-value=1e-13 Score=132.67 Aligned_cols=261 Identities=17% Similarity=0.232 Sum_probs=166.2
Q ss_pred ccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcC-CcccCCCCCCcEeeCCC-CcCcccch
Q 007687 223 DNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTEL-PVGISDLVSLQHLDLSE-SDISELPG 300 (593)
Q Consensus 223 ~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~-~~i~~lp~ 300 (593)
+..++++|.. --+.-..++|..|.|+.+|+..|+.+++||.|||++|.|+.+ |+.|..+..|-.|-+-+ |+|+.+|+
T Consensus 55 ~~GL~eVP~~-LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 55 GKGLTEVPAN-LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred CCCcccCccc-CCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence 3345555542 123456688999999999999999999999999999999988 88999999998888777 79999995
Q ss_pred -hhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccchhhhcCCCCCceEEEEe
Q 007687 301 -ELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELLGLKYLEVISFTL 379 (593)
Q Consensus 301 -~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~ 379 (593)
.+++|..|+.|.+.-| .+..++.+++..|++|..|.++++........ .+..+..++.+.+..
T Consensus 134 ~~F~gL~slqrLllNan-~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~---------------tf~~l~~i~tlhlA~ 197 (498)
T KOG4237|consen 134 GAFGGLSSLQRLLLNAN-HINCIRQDALRDLPSLSLLSLYDNKIQSICKG---------------TFQGLAAIKTLHLAQ 197 (498)
T ss_pred hHhhhHHHHHHHhcChh-hhcchhHHHHHHhhhcchhcccchhhhhhccc---------------cccchhccchHhhhc
Confidence 5899999999999988 78888888899999999999998866422210 112222222222211
Q ss_pred cCc-----------------------cc-hhhhh--------hcccccccceEE--E-ecccCCCceeeecccccccccc
Q 007687 380 RSS-----------------------HG-LQSVL--------SSHKLRCCTRAL--L-LQCFNDSTSLEVSALADLKQLN 424 (593)
Q Consensus 380 ~~~-----------------------~~-~~~~~--------~~~~~~~~L~~L--~-l~~~~~~~~~~~~~l~~l~~L~ 424 (593)
+.. .. .+..+ ...+...+++.+ . ...+.-....+...+..+++|+
T Consensus 198 np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~ 277 (498)
T KOG4237|consen 198 NPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLR 277 (498)
T ss_pred CccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccce
Confidence 110 00 00000 000111112221 1 1111112222334567778888
Q ss_pred ceeeccccccceeeeccCCcccccCCCCccEEEEeCCCCCCCCcc--cccCCCCCEEeeccCccchhhcccCcccccccc
Q 007687 425 RLRIAECKKLEELKMDYTGEVQQFVFHSLKKVEIVNSYKLKDLTF--LVFAPNLESIEVLGCVAMEEMVSVGKFAAVPEV 502 (593)
Q Consensus 425 ~L~l~~~~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 502 (593)
+|+++++... .+...|+.. ...+++|.|..+ ++..+.. +..+..|+.|++.+|....-.+.
T Consensus 278 ~lnlsnN~i~-~i~~~aFe~-----~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~---------- 340 (498)
T KOG4237|consen 278 KLNLSNNKIT-RIEDGAFEG-----AAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG---------- 340 (498)
T ss_pred EeccCCCccc-hhhhhhhcc-----hhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCCeeEEEecc----------
Confidence 8888877543 355556553 677888888777 5665543 66677888888887743322221
Q ss_pred cCCCCCCcccceecccc
Q 007687 503 TANLNPFAKLQYLDLVG 519 (593)
Q Consensus 503 ~~~~~~~~~L~~L~l~~ 519 (593)
.+....+|.+|.+-.
T Consensus 341 --aF~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 341 --AFQTLFSLSTLNLLS 355 (498)
T ss_pred --cccccceeeeeehcc
Confidence 344555666666654
No 23
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.19 E-value=1.3e-11 Score=109.73 Aligned_cols=137 Identities=27% Similarity=0.374 Sum_probs=51.9
Q ss_pred cceecCCCCCCcceeEEEeeccCcccccccc-cCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCccc-C
Q 007687 203 GLTEAPEVKGWENVRRISLMDNQITNLSEVA-TCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGI-S 280 (593)
Q Consensus 203 ~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i-~ 280 (593)
.+..++......++|.|++.+|.+..+.... .+.+|++|++++|.++.+.. +..++.|++|++++|.++.++..+ .
T Consensus 8 ~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~ 85 (175)
T PF14580_consen 8 MIEQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISEGLDK 85 (175)
T ss_dssp ----------------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHH
T ss_pred ccccccccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccccchHH
Confidence 3444555555567888999998888887764 67888889999888888865 778888899999988888886555 3
Q ss_pred CCCCCcEeeCCCCcCcccc--hhhhccccCceeeccccccccccc---hhhcCCCccCceeeccCCC
Q 007687 281 DLVSLQHLDLSESDISELP--GELKALVNLKCLNLEWTRNLITIP---RQLISNLSRLHVLRMFGAS 342 (593)
Q Consensus 281 ~L~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~~lp---~~~i~~l~~L~~L~l~~~~ 342 (593)
.+++|++|++++|+|..+. ..+..+++|+.|++.+|+ +...+ ..++..+|+|+.||...+.
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEcc
Confidence 5788888998888877554 346778888888888884 33222 2356778888888776544
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.12 E-value=1.4e-11 Score=123.97 Aligned_cols=108 Identities=30% Similarity=0.317 Sum_probs=52.4
Q ss_pred ccCCcccEEEccCccCcc-----cchhhhccCCCCcEEEcCCCCCCc-------CCcccCCCCCCcEeeCCCCcCc-ccc
Q 007687 233 ATCRHLLTLFLNQNKLQM-----IHNDFFRFMPSLKVLNLSHAELTE-------LPVGISDLVSLQHLDLSESDIS-ELP 299 (593)
Q Consensus 233 ~~~~~Lr~L~l~~~~l~~-----~~~~~~~~l~~Lr~L~L~~~~l~~-------lp~~i~~L~~L~~L~L~~~~i~-~lp 299 (593)
..+..|+.|++.++.++. ++.. +...+.|+.|+++++.+.. ++..+..+.+|++|++++|.+. ..+
T Consensus 20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~-l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 20 PKLLCLQVLRLEGNTLGEEAAKALASA-LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHhhccEEeecCCCCcHHHHHHHHHH-HhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 344446666666665422 2222 4445556666666654442 2234455556666666666554 233
Q ss_pred hhhhcccc---Cceeecccccccc-----ccchhhcCCC-ccCceeeccCCCC
Q 007687 300 GELKALVN---LKCLNLEWTRNLI-----TIPRQLISNL-SRLHVLRMFGASH 343 (593)
Q Consensus 300 ~~i~~L~~---L~~L~l~~~~~l~-----~lp~~~i~~l-~~L~~L~l~~~~~ 343 (593)
..+..+.+ |++|++++|. +. .+... +..+ ++|++|++.+|..
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l 149 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKG-LKDLPPALEKLVLGRNRL 149 (319)
T ss_pred HHHHHHhccCcccEEEeeCCc-cchHHHHHHHHH-HHhCCCCceEEEcCCCcC
Confidence 33333333 6666666552 22 11111 3344 5556666655543
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.11 E-value=3.8e-11 Score=120.86 Aligned_cols=258 Identities=21% Similarity=0.162 Sum_probs=151.9
Q ss_pred cceeEEEeeccCccc-----cccc-ccCCcccEEEccCccCcccc------hhhhccCCCCcEEEcCCCCCC-cCCcccC
Q 007687 214 ENVRRISLMDNQITN-----LSEV-ATCRHLLTLFLNQNKLQMIH------NDFFRFMPSLKVLNLSHAELT-ELPVGIS 280 (593)
Q Consensus 214 ~~lr~L~l~~~~~~~-----l~~~-~~~~~Lr~L~l~~~~l~~~~------~~~~~~l~~Lr~L~L~~~~l~-~lp~~i~ 280 (593)
..++.+.+.++.+.. ++.. ...++++.|+++++.+...+ ...+..+++|++|++++|.+. ..+..+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 458888888888743 3332 66777999999888765211 234677889999999999886 3444554
Q ss_pred CCCC---CcEeeCCCCcCc-----ccchhhhcc-ccCceeecccccccc-----ccchhhcCCCccCceeeccCCCCCCC
Q 007687 281 DLVS---LQHLDLSESDIS-----ELPGELKAL-VNLKCLNLEWTRNLI-----TIPRQLISNLSRLHVLRMFGASHNAF 346 (593)
Q Consensus 281 ~L~~---L~~L~L~~~~i~-----~lp~~i~~L-~~L~~L~l~~~~~l~-----~lp~~~i~~l~~L~~L~l~~~~~~~~ 346 (593)
.+.+ |++|++++|.+. .+...+..+ ++|+.|++++|. +. .++.. +..+++|++|++.++....
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~- 179 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKA-LRANRDLKELNLANNGIGD- 179 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHH-HHhCCCcCEEECcCCCCch-
Confidence 4444 999999999776 234456677 899999999994 43 23333 6677889999998876530
Q ss_pred CCCCccccccCCcccchhhhcCCCCCceEEEEecCccchh--hhhhcccccccceEEEecccCCCceeeecccccccccc
Q 007687 347 DGASEDSILFGGGALIVEELLGLKYLEVISFTLRSSHGLQ--SVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLKQLN 424 (593)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 424 (593)
.........+..+++|+.|+++.+...... .+. ..+..+++|+
T Consensus 180 ----------~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~-------------------------~~~~~~~~L~ 224 (319)
T cd00116 180 ----------AGIRALAEGLKANCNLEVLDLNNNGLTDEGASALA-------------------------ETLASLKSLE 224 (319)
T ss_pred ----------HHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHH-------------------------HHhcccCCCC
Confidence 000122334555567777777654432211 111 1234456677
Q ss_pred ceeeccccccceeeeccCCcccccCCCCccEEEEeCCCCCCC-----C-cccccCCCCCEEeeccCccchhhcccCcccc
Q 007687 425 RLRIAECKKLEELKMDYTGEVQQFVFHSLKKVEIVNSYKLKD-----L-TFLVFAPNLESIEVLGCVAMEEMVSVGKFAA 498 (593)
Q Consensus 425 ~L~l~~~~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-----l-~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 498 (593)
+|++++|.... ..............+.|++|++.+| .+++ + ..+..+++|+++++++|..-..-..
T Consensus 225 ~L~ls~n~l~~-~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~------ 296 (319)
T cd00116 225 VLNLGDNNLTD-AGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQ------ 296 (319)
T ss_pred EEecCCCcCch-HHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHH------
Confidence 77777664221 0000000000001367888888887 4542 1 1245567888888888765433100
Q ss_pred cccccCCCCCC-cccceecccc
Q 007687 499 VPEVTANLNPF-AKLQYLDLVG 519 (593)
Q Consensus 499 ~~~~~~~~~~~-~~L~~L~l~~ 519 (593)
.+......+ +.|+.|++.+
T Consensus 297 --~~~~~~~~~~~~~~~~~~~~ 316 (319)
T cd00116 297 --LLAESLLEPGNELESLWVKD 316 (319)
T ss_pred --HHHHHHhhcCCchhhcccCC
Confidence 001123344 6777777765
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.09 E-value=1.4e-10 Score=103.26 Aligned_cols=123 Identities=24% Similarity=0.305 Sum_probs=59.8
Q ss_pred CcEEEEcCCcceecCCCC-CCcceeEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCC
Q 007687 194 ENFLVYAGVGLTEAPEVK-GWENVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAEL 272 (593)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~-~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l 272 (593)
..-+...++.+..+.... .+.+++.|++++|.++.++.+..+++|++|++++|.++++.+.+...+++|++|++++|.|
T Consensus 21 ~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I 100 (175)
T PF14580_consen 21 LRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKI 100 (175)
T ss_dssp ---------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS--
T ss_pred cccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcC
Confidence 456778888888887766 5789999999999999999999999999999999999999876445799999999999998
Q ss_pred CcCC--cccCCCCCCcEeeCCCCcCcccch----hhhccccCceeecccc
Q 007687 273 TELP--VGISDLVSLQHLDLSESDISELPG----ELKALVNLKCLNLEWT 316 (593)
Q Consensus 273 ~~lp--~~i~~L~~L~~L~L~~~~i~~lp~----~i~~L~~L~~L~l~~~ 316 (593)
..+- ..+..+++|++|++.+|.++..+. .+..+++|+.||-..-
T Consensus 101 ~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 101 SDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp -SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred CChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 8663 367889999999999998886663 4788999999997543
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.96 E-value=4.6e-11 Score=119.81 Aligned_cols=169 Identities=27% Similarity=0.357 Sum_probs=119.3
Q ss_pred EEEcCCcceecCCC---CCCcceeEEEeeccCccccccc-ccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCC
Q 007687 197 LVYAGVGLTEAPEV---KGWENVRRISLMDNQITNLSEV-ATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAEL 272 (593)
Q Consensus 197 ~~~~~~~~~~~~~~---~~~~~lr~L~l~~~~~~~l~~~-~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l 272 (593)
+.+.+..+...|.. ..+......+++.|.+..+|.. ..+..|..+.++.|.+..+|.. +.++..|.+|+|+.|.+
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~-i~~L~~lt~l~ls~Nql 133 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEA-ICNLEALTFLDLSSNQL 133 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchh-hhhhhHHHHhhhccchh
Confidence 44445555555421 2233445667777887777765 6677788888888888888877 78888888888888888
Q ss_pred CcCCcccCCCCCCcEeeCCCCcCcccchhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCcc
Q 007687 273 TELPVGISDLVSLQHLDLSESDISELPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASED 352 (593)
Q Consensus 273 ~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 352 (593)
..+|..++.|+ |+.|-+++|+++.+|..|+.+.+|..||.+.| .+..+|.. ++.+.+|+.|.+..+...
T Consensus 134 S~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~n-ei~slpsq-l~~l~slr~l~vrRn~l~-------- 202 (722)
T KOG0532|consen 134 SHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQ-LGYLTSLRDLNVRRNHLE-------- 202 (722)
T ss_pred hcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhh-hhhhchHH-hhhHHHHHHHHHhhhhhh--------
Confidence 88888887765 78888888888888888888888888888888 67777776 788888888877766543
Q ss_pred ccccCCcccchhhhcCCCCCceEEEEecCccchh
Q 007687 353 SILFGGGALIVEELLGLKYLEVISFTLRSSHGLQ 386 (593)
Q Consensus 353 ~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~ 386 (593)
..+.++..|+ |..|+++.+....++
T Consensus 203 --------~lp~El~~Lp-Li~lDfScNkis~iP 227 (722)
T KOG0532|consen 203 --------DLPEELCSLP-LIRLDFSCNKISYLP 227 (722)
T ss_pred --------hCCHHHhCCc-eeeeecccCceeecc
Confidence 3455555443 555666655544443
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.93 E-value=7.1e-11 Score=118.49 Aligned_cols=149 Identities=28% Similarity=0.403 Sum_probs=78.1
Q ss_pred ceeEEEeeccCccccccc-ccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCcccCCCCCCcEeeCCCC
Q 007687 215 NVRRISLMDNQITNLSEV-ATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISDLVSLQHLDLSES 293 (593)
Q Consensus 215 ~lr~L~l~~~~~~~l~~~-~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~ 293 (593)
.+..+.+..|.+..+|.. ..+..|.+|+++.|+++.+|.. ++.|+ |++|-+++|+++.+|..++.+.+|..||.+.|
T Consensus 99 ~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~-lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~n 176 (722)
T KOG0532|consen 99 SLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDG-LCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKN 176 (722)
T ss_pred HHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChh-hhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhh
Confidence 444455555555554443 4555555555555555555554 33333 55555555555555555555555555555555
Q ss_pred cCcccchhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccchhhhcCCCCCc
Q 007687 294 DISELPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELLGLKYLE 373 (593)
Q Consensus 294 ~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~ 373 (593)
.+..+|+.++.+.+|+.|.++.| .+..+|.+ +..| .|..|+++.+... ..+-.+.+|++|+
T Consensus 177 ei~slpsql~~l~slr~l~vrRn-~l~~lp~E-l~~L-pLi~lDfScNkis----------------~iPv~fr~m~~Lq 237 (722)
T KOG0532|consen 177 EIQSLPSQLGYLTSLRDLNVRRN-HLEDLPEE-LCSL-PLIRLDFSCNKIS----------------YLPVDFRKMRHLQ 237 (722)
T ss_pred hhhhchHHhhhHHHHHHHHHhhh-hhhhCCHH-HhCC-ceeeeecccCcee----------------ecchhhhhhhhhe
Confidence 55555555555555555555555 44555554 3333 2555555544432 2344455555555
Q ss_pred eEEEEecCccc
Q 007687 374 VISFTLRSSHG 384 (593)
Q Consensus 374 ~L~i~~~~~~~ 384 (593)
+|.+..+....
T Consensus 238 ~l~LenNPLqS 248 (722)
T KOG0532|consen 238 VLQLENNPLQS 248 (722)
T ss_pred eeeeccCCCCC
Confidence 55555544433
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=3.2e-10 Score=110.53 Aligned_cols=212 Identities=18% Similarity=0.156 Sum_probs=107.4
Q ss_pred ccCCcccEEEccCccCcccch-hhhccCCCCcEEEcCCCCCC---cCCcccCCCCCCcEeeCCCCcCcccchh--hhccc
Q 007687 233 ATCRHLLTLFLNQNKLQMIHN-DFFRFMPSLKVLNLSHAELT---ELPVGISDLVSLQHLDLSESDISELPGE--LKALV 306 (593)
Q Consensus 233 ~~~~~Lr~L~l~~~~l~~~~~-~~~~~l~~Lr~L~L~~~~l~---~lp~~i~~L~~L~~L~L~~~~i~~lp~~--i~~L~ 306 (593)
.++++||...+.++.....+. .....|+++|.|||++|-+. .+-+-...|++|+.|+++.|++....++ -..+.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 455666666666665443332 23455666666666666433 2223345556666666666544422111 12345
Q ss_pred cCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccchhhhcCCCCCceEEEEecCccchh
Q 007687 307 NLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELLGLKYLEVISFTLRSSHGLQ 386 (593)
Q Consensus 307 ~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~ 386 (593)
+|+.|.++.|.....--..+....++|+.|++..+... ..
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~---------------------------------------~~- 237 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII---------------------------------------LI- 237 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc---------------------------------------ce-
Confidence 55555555552111100111334455555555444211 00
Q ss_pred hhhhcccccccceEEEecccCCCceeeeccccccccccceeeccccccceeeeccCCcccccCCCCccEEEEeCCCCCCC
Q 007687 387 SVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIAECKKLEELKMDYTGEVQQFVFHSLKKVEIVNSYKLKD 466 (593)
Q Consensus 387 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 466 (593)
..........|+.|+|+++..+..-.....+.++.|..|+++.|....--.++.........+++|++|.+..+ ++.+
T Consensus 238 -~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~ 315 (505)
T KOG3207|consen 238 -KATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISEN-NIRD 315 (505)
T ss_pred -ecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccC-cccc
Confidence 01111233466777777776555544455677888888888876533211222211111235888888888887 4444
Q ss_pred C---cccccCCCCCEEeeccCcc
Q 007687 467 L---TFLVFAPNLESIEVLGCVA 486 (593)
Q Consensus 467 l---~~l~~l~~L~~L~l~~c~~ 486 (593)
+ ..+..+++|+.|.+..++.
T Consensus 316 w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 316 WRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred ccccchhhccchhhhhhcccccc
Confidence 4 3455667777777766543
No 30
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.90 E-value=2.8e-10 Score=112.63 Aligned_cols=111 Identities=15% Similarity=0.287 Sum_probs=81.6
Q ss_pred chhhhhhhhhhccccchhhchHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhc--cchhhhhhhHHHHHHHHHHHHHH-
Q 007687 13 GAIFNRCLDCFLGKAAYIRNLQENVIALETELVKLIEAKNDVMARV---VNAER--QPMMTRLNKVQGWLSRVDAVKAE- 86 (593)
Q Consensus 13 ~~~~~~~~~~f~~~a~~~~~~~~~~~~l~~~~~~L~~~~~~i~~k~---~~a~~--~~~l~~~~~~~~W~~~l~~l~~~- 86 (593)
....+++|++|.+.++... ... .+.+.+.+++|+++| |+|.+ |+.|+.+.++++|.++++.+...
T Consensus 156 ~L~~~ea~~L~~~~~~~~~-~~~--------~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~ 226 (287)
T PF00931_consen 156 PLSEEEALELFKKRAGRKE-SES--------PEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSL 226 (287)
T ss_dssp S--HHHHHHHHHHHHTSHS-------------TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCH
T ss_pred ccccccccccccccccccc-ccc--------ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3345899999999986543 001 122344588999998 87765 65787777899999998766532
Q ss_pred ---------HH---HHHhhChHHHHHhHhccccCCcccchhhhhHHHHHHhHHHHHHHHHhcCCCCC
Q 007687 87 ---------AD---ELIRHGSQEIEKLCLGGYCSKNCHSSYKLGKQVAKKLRDKLIDCWIGEGFLTE 141 (593)
Q Consensus 87 ---------~~---~i~~~~l~~~lk~Cf~~yc~s~fp~~~~i~~~~~~~~~~~Li~~WiaeGfi~~ 141 (593)
+. +.....||++.|+|| .|| |+||+++.|++ +.|+++|+|||||..
T Consensus 227 ~~~~~~~~~~~~~l~~s~~~L~~~~~~~f-~~L-~~f~~~~~i~~-------~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 227 RESRDYDRSVFSALELSYDSLPDELRRCF-LYL-SIFPEGVPIPR-------ERLIRLWVAEGFISS 284 (287)
T ss_dssp TCSSGSCHHHHHHHHHHHHSSHTCCHHHH-HHG-GGSGTTS-EEH-------HHHHHHHTT-HHTC-
T ss_pred cccccccccccccceechhcCCccHHHHH-hhC-cCCCCCceECH-------HHHHHHHHHCCCCcc
Confidence 22 233458999999999 999 99999999999 999999999999986
No 31
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.85 E-value=1.5e-10 Score=112.14 Aligned_cols=290 Identities=16% Similarity=0.148 Sum_probs=152.1
Q ss_pred CcccEEEccCccCcc--cchhhhccCCCCcEEEcCCC-CCCc--CCcccCCCCCCcEeeCCCC-cCccc--chhhhcccc
Q 007687 236 RHLLTLFLNQNKLQM--IHNDFFRFMPSLKVLNLSHA-ELTE--LPVGISDLVSLQHLDLSES-DISEL--PGELKALVN 307 (593)
Q Consensus 236 ~~Lr~L~l~~~~l~~--~~~~~~~~l~~Lr~L~L~~~-~l~~--lp~~i~~L~~L~~L~L~~~-~i~~l--p~~i~~L~~ 307 (593)
..|+.|.+.|+.-.. -...+-..+++++.|++.+| .++. +-..-..+.+|++|++..| .++.. -.-...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 467777787776211 11223456778888888877 3441 2222345678888888886 55532 223445778
Q ss_pred Cceeeccccccccc--cchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccchhhhcC-CCCCceEEEEecCccc
Q 007687 308 LKCLNLEWTRNLIT--IPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELLG-LKYLEVISFTLRSSHG 384 (593)
Q Consensus 308 L~~L~l~~~~~l~~--lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-l~~L~~L~i~~~~~~~ 384 (593)
|.+|++++|..+.. +-. ...++..++.+...||... ....+..+.. ...+-.+++.....-.
T Consensus 218 L~~lNlSwc~qi~~~gv~~-~~rG~~~l~~~~~kGC~e~--------------~le~l~~~~~~~~~i~~lnl~~c~~lT 282 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQA-LQRGCKELEKLSLKGCLEL--------------ELEALLKAAAYCLEILKLNLQHCNQLT 282 (483)
T ss_pred HHHhhhccCchhhcCcchH-Hhccchhhhhhhhcccccc--------------cHHHHHHHhccChHhhccchhhhcccc
Confidence 88888888865543 111 1334555666655555432 1111111111 1112222211111111
Q ss_pred hhhhhhcccccccceEEEecccCCCceeeeccc-cccccccceeeccccccceeeeccCCcccccCCCCccEEEEeCCCC
Q 007687 385 LQSVLSSHKLRCCTRALLLQCFNDSTSLEVSAL-ADLKQLNRLRIAECKKLEELKMDYTGEVQQFVFHSLKKVEIVNSYK 463 (593)
Q Consensus 385 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~ 463 (593)
-..+.........|+.|..+++.+.....+.++ .+.++|+.|.+.+|..+.+......+ ...+.|+.+++.+|..
T Consensus 283 D~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~----rn~~~Le~l~~e~~~~ 358 (483)
T KOG4341|consen 283 DEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG----RNCPHLERLDLEECGL 358 (483)
T ss_pred chHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh----cCChhhhhhcccccce
Confidence 111222223344567777777766665555555 34567777777777765533222222 1456777777777755
Q ss_pred CCCCc--c-cccCCCCCEEeeccCccchhhcccCcccccccccCCCCCCcccceecccccccCcccCCC-CCCCCcccee
Q 007687 464 LKDLT--F-LVFAPNLESIEVLGCVAMEEMVSVGKFAAVPEVTANLNPFAKLQYLDLVGAINLKSIYWM-PLSFPLLKYL 539 (593)
Q Consensus 464 l~~l~--~-l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~-~~~~~~L~~L 539 (593)
..+-. . -.++|.|+.|.+++|..+++... ..+.....+...|..|.+++||.+.+-... ...+++|+.+
T Consensus 359 ~~d~tL~sls~~C~~lr~lslshce~itD~gi-------~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri 431 (483)
T KOG4341|consen 359 ITDGTLASLSRNCPRLRVLSLSHCELITDEGI-------RHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERI 431 (483)
T ss_pred ehhhhHhhhccCCchhccCChhhhhhhhhhhh-------hhhhhccccccccceeeecCCCCchHHHHHHHhhCccccee
Confidence 44431 1 23567777777777766655311 011113345566777777777766543322 1236677777
Q ss_pred eeccCcCCCCCC
Q 007687 540 RAMNCHKLKKLP 551 (593)
Q Consensus 540 ~i~~C~~L~~lP 551 (593)
++.+|....+=|
T Consensus 432 ~l~~~q~vtk~~ 443 (483)
T KOG4341|consen 432 ELIDCQDVTKEA 443 (483)
T ss_pred eeechhhhhhhh
Confidence 777776665533
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.83 E-value=4.8e-10 Score=103.90 Aligned_cols=127 Identities=28% Similarity=0.433 Sum_probs=81.7
Q ss_pred CCcceeEEEeeccCccccccc-ccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCcccCCCCCCcEeeC
Q 007687 212 GWENVRRISLMDNQITNLSEV-ATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISDLVSLQHLDL 290 (593)
Q Consensus 212 ~~~~lr~L~l~~~~~~~l~~~-~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L 290 (593)
.|+.+..+++++|.|+.+... .-.+.+|.|+++.|.+..+.. +..+.+|..|||++|.++++-..-.+|-|.++|.|
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 345566677777776666555 556667777777777665554 56667777777777766666555556666677777
Q ss_pred CCCcCcccchhhhccccCceeeccccccccccc--hhhcCCCccCceeeccCCCC
Q 007687 291 SESDISELPGELKALVNLKCLNLEWTRNLITIP--RQLISNLSRLHVLRMFGASH 343 (593)
Q Consensus 291 ~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp--~~~i~~l~~L~~L~l~~~~~ 343 (593)
.+|.|+.+ +++++|.+|..||+++| ++..+. .+ ||+++.|++|.+.++..
T Consensus 360 a~N~iE~L-SGL~KLYSLvnLDl~~N-~Ie~ldeV~~-IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 360 AQNKIETL-SGLRKLYSLVNLDLSSN-QIEELDEVNH-IGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhhHhhh-hhhHhhhhheecccccc-chhhHHHhcc-cccccHHHHHhhcCCCc
Confidence 77766666 34667777777777776 444432 22 67777777777766654
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.81 E-value=5.1e-09 Score=108.60 Aligned_cols=83 Identities=37% Similarity=0.598 Sum_probs=40.6
Q ss_pred cCCCCcEEEcCCCCCCcCCcccCCCC-CCcEeeCCCCcCcccchhhhccccCceeeccccccccccchhhcCCCccCcee
Q 007687 258 FMPSLKVLNLSHAELTELPVGISDLV-SLQHLDLSESDISELPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVL 336 (593)
Q Consensus 258 ~l~~Lr~L~L~~~~l~~lp~~i~~L~-~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L 336 (593)
.++.++.|++.++.+..+|...+.+. +|++|+++++.+..+|..++.+++|+.|++++| .+..+|.. .+.+++|+.|
T Consensus 114 ~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~-~~~~~~L~~L 191 (394)
T COG4886 114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKL-LSNLSNLNNL 191 (394)
T ss_pred cccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhh-hhhhhhhhhe
Confidence 33445555555555555544444442 555555555555555444555555555555555 44444442 3344555555
Q ss_pred eccCCC
Q 007687 337 RMFGAS 342 (593)
Q Consensus 337 ~l~~~~ 342 (593)
++.++.
T Consensus 192 ~ls~N~ 197 (394)
T COG4886 192 DLSGNK 197 (394)
T ss_pred eccCCc
Confidence 554443
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.9e-09 Score=105.19 Aligned_cols=159 Identities=19% Similarity=0.159 Sum_probs=116.1
Q ss_pred CCcceeEEEeeccCcccccc---cccCCcccEEEccCccCcccc--hhhhccCCCCcEEEcCCCCCCcCCc--ccCCCCC
Q 007687 212 GWENVRRISLMDNQITNLSE---VATCRHLLTLFLNQNKLQMIH--NDFFRFMPSLKVLNLSHAELTELPV--GISDLVS 284 (593)
Q Consensus 212 ~~~~lr~L~l~~~~~~~l~~---~~~~~~Lr~L~l~~~~l~~~~--~~~~~~l~~Lr~L~L~~~~l~~lp~--~i~~L~~ 284 (593)
.+++||.+++.++.+...+. ...|+++|.|++++|-+.... ..+..++++|+.|+|+.|.+....+ .-..+.+
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 34688999998888777663 388999999999999765432 2346789999999999998774433 2347889
Q ss_pred CcEeeCCCCcCc--ccchhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccc
Q 007687 285 LQHLDLSESDIS--ELPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALI 362 (593)
Q Consensus 285 L~~L~L~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 362 (593)
|+.|.|++|.++ ++-.....+++|..|++.+|..+..--.. ..-+..|++|+++++... ....
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li--------------~~~~ 263 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLI--------------DFDQ 263 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCccc--------------cccc
Confidence 999999999887 44455667899999999998433222121 345778999999998876 3344
Q ss_pred hhhhcCCCCCceEEEEecCccch
Q 007687 363 VEELLGLKYLEVISFTLRSSHGL 385 (593)
Q Consensus 363 ~~~L~~l~~L~~L~i~~~~~~~~ 385 (593)
....+.++.|+.|.++.++...+
T Consensus 264 ~~~~~~l~~L~~Lnls~tgi~si 286 (505)
T KOG3207|consen 264 GYKVGTLPGLNQLNLSSTGIASI 286 (505)
T ss_pred ccccccccchhhhhccccCcchh
Confidence 45677778888888876655443
No 35
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.73 E-value=4.6e-10 Score=108.82 Aligned_cols=281 Identities=15% Similarity=0.158 Sum_probs=134.0
Q ss_pred ceeEEEeeccCcccccc---c-ccCCcccEEEccCcc-Cccc-chhhhccCCCCcEEEcCCC-CCCcC--CcccCCCCCC
Q 007687 215 NVRRISLMDNQITNLSE---V-ATCRHLLTLFLNQNK-LQMI-HNDFFRFMPSLKVLNLSHA-ELTEL--PVGISDLVSL 285 (593)
Q Consensus 215 ~lr~L~l~~~~~~~l~~---~-~~~~~Lr~L~l~~~~-l~~~-~~~~~~~l~~Lr~L~L~~~-~l~~l--p~~i~~L~~L 285 (593)
.++.|++.+..-..... . ..++++..|.+.+|. +++. -.++-..++.|++|+|..| .++.. -.-...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 45566666554333222 2 566666666666665 2221 1122234666777777665 44421 1123456667
Q ss_pred cEeeCCCC-cCcc--cchhhhccccCceeeccccccccccchhhc----CCCccCceeeccCCCCCCCCCCCccccccCC
Q 007687 286 QHLDLSES-DISE--LPGELKALVNLKCLNLEWTRNLITIPRQLI----SNLSRLHVLRMFGASHNAFDGASEDSILFGG 358 (593)
Q Consensus 286 ~~L~L~~~-~i~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i----~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 358 (593)
.||++++| .|+. +..-.....+|+.+..++|.. .+.+++ +.+.-+-++++..|...
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e---~~le~l~~~~~~~~~i~~lnl~~c~~l-------------- 281 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLE---LELEALLKAAAYCLEILKLNLQHCNQL-------------- 281 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhccccc---ccHHHHHHHhccChHhhccchhhhccc--------------
Confidence 77777766 3432 222233445566666666532 222212 22333444444444332
Q ss_pred cccchhhhc-CCCCCceEEEEecCccchhhhhhcccccccceEEEecccCCCceeeecccc-ccccccceeeccccccce
Q 007687 359 GALIVEELL-GLKYLEVISFTLRSSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALA-DLKQLNRLRIAECKKLEE 436 (593)
Q Consensus 359 ~~~~~~~L~-~l~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~ 436 (593)
....+..+. ....|+.|..+......-..+........+|+.|.+..|.......+..++ +.+.|+.+++.+|....+
T Consensus 282 TD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d 361 (483)
T KOG4341|consen 282 TDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITD 361 (483)
T ss_pred cchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehh
Confidence 111122222 234555555553222111112222223346666777666654444333332 346677777666654331
Q ss_pred eeeccCCcccccCCCCccEEEEeCCCCCCCCc--c----cccCCCCCEEeeccCccchhhcccCcccccccccCCCCCCc
Q 007687 437 LKMDYTGEVQQFVFHSLKKVEIVNSYKLKDLT--F----LVFAPNLESIEVLGCVAMEEMVSVGKFAAVPEVTANLNPFA 510 (593)
Q Consensus 437 l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~--~----l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~ 510 (593)
- +.. .....++.|+.+.++.|..+++.. . -..+..|+.|.+++|+.+++-.- ..+..++
T Consensus 362 ~--tL~--sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L-----------e~l~~c~ 426 (483)
T KOG4341|consen 362 G--TLA--SLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL-----------EHLSICR 426 (483)
T ss_pred h--hHh--hhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHH-----------HHHhhCc
Confidence 1 111 112245667777777666555541 1 22455666777777766555321 1334556
Q ss_pred ccceecccccccCcccC
Q 007687 511 KLQYLDLVGAINLKSIY 527 (593)
Q Consensus 511 ~L~~L~l~~c~~L~~l~ 527 (593)
+|+.+++.+|.....-+
T Consensus 427 ~Leri~l~~~q~vtk~~ 443 (483)
T KOG4341|consen 427 NLERIELIDCQDVTKEA 443 (483)
T ss_pred ccceeeeechhhhhhhh
Confidence 66666666666655433
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.71 E-value=2e-09 Score=99.92 Aligned_cols=134 Identities=26% Similarity=0.285 Sum_probs=103.8
Q ss_pred cCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCcccCCCCCCcEeeCCCCcCcccchhhhccccCceeec
Q 007687 234 TCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISDLVSLQHLDLSESDISELPGELKALVNLKCLNL 313 (593)
Q Consensus 234 ~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l 313 (593)
....|..+++++|.++.+.++ ..-.+.+|+|++++|.+..+- .+..|.+|+.|||++|.++++-..-.+|-|.++|.+
T Consensus 282 TWq~LtelDLS~N~I~~iDES-vKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDES-VKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hHhhhhhccccccchhhhhhh-hhhccceeEEeccccceeeeh-hhhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 445678888888888888877 677888888888888888774 477888888888888888877666667888888888
Q ss_pred cccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccchhhhcCCCCCceEEEEecCccchh
Q 007687 314 EWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELLGLKYLEVISFTLRSSHGLQ 386 (593)
Q Consensus 314 ~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~ 386 (593)
+.| .+..+.. ++++-+|..|++.++.+. ....+..+++|+.|+.+.+..+....+.
T Consensus 360 a~N-~iE~LSG--L~KLYSLvnLDl~~N~Ie--------------~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 360 AQN-KIETLSG--LRKLYSLVNLDLSSNQIE--------------ELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhh-hHhhhhh--hHhhhhheeccccccchh--------------hHHHhcccccccHHHHHhhcCCCccccc
Confidence 888 6666654 788888888888888765 4556677888888888777766655443
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.69 E-value=1.4e-08 Score=74.18 Aligned_cols=59 Identities=41% Similarity=0.570 Sum_probs=38.9
Q ss_pred CcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCC-cccCCCCCCcEeeCCCCc
Q 007687 236 RHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELP-VGISDLVSLQHLDLSESD 294 (593)
Q Consensus 236 ~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~ 294 (593)
++|++|++++|.++.+++..|.++++|++|++++|.++.+| ..|..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 35666666666666666666666777777777766666663 356666666666666664
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.66 E-value=2.3e-08 Score=103.77 Aligned_cols=192 Identities=28% Similarity=0.335 Sum_probs=107.9
Q ss_pred EEeeccCc-ccccccccCCcccEEEccCccCcccchhhhccCC-CCcEEEcCCCCCCcCCcccCCCCCCcEeeCCCCcCc
Q 007687 219 ISLMDNQI-TNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMP-SLKVLNLSHAELTELPVGISDLVSLQHLDLSESDIS 296 (593)
Q Consensus 219 L~l~~~~~-~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~-~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~ 296 (593)
+....+.+ .........+.+..|++.++.++.+++. ...+. +|++|+++++.+..+|..++.+++|+.|++++|.+.
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcccccCccc-cccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence 44455544 3333334456666677766666666664 34443 677777777777766666667777777777777777
Q ss_pred ccchhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccchhhhcCCCCCceEE
Q 007687 297 ELPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELLGLKYLEVIS 376 (593)
Q Consensus 297 ~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~ 376 (593)
++|...+.+++|+.|+++++ .+..+|.. ++.+..|++|.+.++... ..+..+..+.++..+.
T Consensus 177 ~l~~~~~~~~~L~~L~ls~N-~i~~l~~~-~~~~~~L~~l~~~~N~~~----------------~~~~~~~~~~~l~~l~ 238 (394)
T COG4886 177 DLPKLLSNLSNLNNLDLSGN-KISDLPPE-IELLSALEELDLSNNSII----------------ELLSSLSNLKNLSGLE 238 (394)
T ss_pred hhhhhhhhhhhhhheeccCC-ccccCchh-hhhhhhhhhhhhcCCcce----------------ecchhhhhcccccccc
Confidence 77666656667777777766 56666664 455555666666655311 1233334444444444
Q ss_pred EEecCccchhhhhhcccccccceEEEecccCCCceeeeccccccccccceeeccccccc
Q 007687 377 FTLRSSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIAECKKLE 435 (593)
Q Consensus 377 i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 435 (593)
+..+....... .......++.|+++++.. ..++ .+.+..+|+.|+++++....
T Consensus 239 l~~n~~~~~~~---~~~~l~~l~~L~~s~n~i-~~i~--~~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 239 LSNNKLEDLPE---SIGNLSNLETLDLSNNQI-SSIS--SLGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred cCCceeeeccc---hhccccccceeccccccc-cccc--cccccCccCEEeccCccccc
Confidence 33222222111 112223466666666532 2222 26677788888888776544
No 39
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=1.4e-09 Score=100.94 Aligned_cols=184 Identities=17% Similarity=0.131 Sum_probs=85.0
Q ss_pred CceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccchhhhcCCCCCceEEEEecCccchhh
Q 007687 308 LKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELLGLKYLEVISFTLRSSHGLQS 387 (593)
Q Consensus 308 L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~ 387 (593)
|++||++......+--.++++.+.+|+.|.+.+... +......+..-.+|+.|+++..++-..-+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~L---------------dD~I~~~iAkN~~L~~lnlsm~sG~t~n~ 251 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRL---------------DDPIVNTIAKNSNLVRLNLSMCSGFTENA 251 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhcccccccc---------------CcHHHHHHhccccceeeccccccccchhH
Confidence 555555544211111122344555555555555443 33344445555555555555433322222
Q ss_pred hhhcccccccceEEEecccCCCceeeecccc-ccccccceeeccccccceeeeccCCcccccCCCCccEEEEeCCCCCCC
Q 007687 388 VLSSHKLRCCTRALLLQCFNDSTSLEVSALA-DLKQLNRLRIAECKKLEELKMDYTGEVQQFVFHSLKKVEIVNSYKLKD 466 (593)
Q Consensus 388 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 466 (593)
........+.|.+|+|+||....+..-..+. --++|+.|+|+||...- ..+-.. .-...+++|.+|+|++|..+++
T Consensus 252 ~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl--~~sh~~-tL~~rcp~l~~LDLSD~v~l~~ 328 (419)
T KOG2120|consen 252 LQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNL--QKSHLS-TLVRRCPNLVHLDLSDSVMLKN 328 (419)
T ss_pred HHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhh--hhhHHH-HHHHhCCceeeeccccccccCc
Confidence 2122223345666666666443332111111 12567777777765221 111000 0012356777777777655554
Q ss_pred C--cccccCCCCCEEeeccCccchhhcccCcccccccccCCCCCCcccceeccccc
Q 007687 467 L--TFLVFAPNLESIEVLGCVAMEEMVSVGKFAAVPEVTANLNPFAKLQYLDLVGA 520 (593)
Q Consensus 467 l--~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 520 (593)
= ..+-+++.|++|.+++|+.+..- ..-.+...|+|.+|++.+|
T Consensus 329 ~~~~~~~kf~~L~~lSlsRCY~i~p~-----------~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 329 DCFQEFFKFNYLQHLSLSRCYDIIPE-----------TLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hHHHHHHhcchheeeehhhhcCCChH-----------HeeeeccCcceEEEEeccc
Confidence 1 12456666777777776543221 0113445566666666665
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.49 E-value=3e-07 Score=100.09 Aligned_cols=106 Identities=22% Similarity=0.289 Sum_probs=80.7
Q ss_pred cccEEEccCccCcccchhhhccCCCCcEEEcCCCCCC-cCCcccCCCCCCcEeeCCCCcCc-ccchhhhccccCceeecc
Q 007687 237 HLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELT-ELPVGISDLVSLQHLDLSESDIS-ELPGELKALVNLKCLNLE 314 (593)
Q Consensus 237 ~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~-~lp~~i~~L~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~l~ 314 (593)
.++.|+|++|.+....+..+..+++|+.|+|++|.+. .+|..++.+++|++|+|++|.+. .+|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3677888888876433334788888888888888887 67888888888888888888887 678888888888888888
Q ss_pred ccccccccchhhcCC-CccCceeeccCCCC
Q 007687 315 WTRNLITIPRQLISN-LSRLHVLRMFGASH 343 (593)
Q Consensus 315 ~~~~l~~lp~~~i~~-l~~L~~L~l~~~~~ 343 (593)
+|.....+|.. ++. ..++..+++.++..
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCCcc
Confidence 88666678876 444 34666777766543
No 41
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=1.1e-08 Score=95.00 Aligned_cols=182 Identities=21% Similarity=0.231 Sum_probs=98.6
Q ss_pred CCcEEEcCCCCCC--cCCcccCCCCCCcEeeCCCCcCc-ccchhhhccccCceeeccccccccccch-hhcCCCccCcee
Q 007687 261 SLKVLNLSHAELT--ELPVGISDLVSLQHLDLSESDIS-ELPGELKALVNLKCLNLEWTRNLITIPR-QLISNLSRLHVL 336 (593)
Q Consensus 261 ~Lr~L~L~~~~l~--~lp~~i~~L~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L 336 (593)
.|++|||+...++ .+-.-+..+.+|+.|.|.+..+. .+-..|.+=.+|+.|+++.|..++...- -++..++.|++|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4666677666655 33334556666666666666554 3334455556666666666655543321 124556666666
Q ss_pred eccCCCCCCCCCCCccccccCCcccchhhhcCCCCCceEEEEecCccchhhhhhcccccccceEEEecccCC-Cceeeec
Q 007687 337 RMFGASHNAFDGASEDSILFGGGALIVEELLGLKYLEVISFTLRSSHGLQSVLSSHKLRCCTRALLLQCFND-STSLEVS 415 (593)
Q Consensus 337 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~ 415 (593)
+++.|... .-.......+....|..|+|+++.. ...-.++
T Consensus 266 NlsWc~l~---------------------------------------~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~ 306 (419)
T KOG2120|consen 266 NLSWCFLF---------------------------------------TEKVTVAVAHISETLTQLNLSGYRRNLQKSHLS 306 (419)
T ss_pred CchHhhcc---------------------------------------chhhhHHHhhhchhhhhhhhhhhHhhhhhhHHH
Confidence 66655442 1111111112233555566655532 1111222
Q ss_pred cc-cccccccceeeccccccceeeeccCCcccccCCCCccEEEEeCCCCCCC--CcccccCCCCCEEeeccCcc
Q 007687 416 AL-ADLKQLNRLRIAECKKLEELKMDYTGEVQQFVFHSLKKVEIVNSYKLKD--LTFLVFAPNLESIEVLGCVA 486 (593)
Q Consensus 416 ~l-~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~--l~~l~~l~~L~~L~l~~c~~ 486 (593)
.+ ..+|+|..|++++|..++.-...-+. .|+.|++|.++.|..+.- +-.+...|+|.+|++.+|-.
T Consensus 307 tL~~rcp~l~~LDLSD~v~l~~~~~~~~~-----kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 307 TLVRRCPNLVHLDLSDSVMLKNDCFQEFF-----KFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred HHHHhCCceeeeccccccccCchHHHHHH-----hcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence 33 35678888888887766521111111 377888888888854432 22367788888888887743
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.36 E-value=4.2e-07 Score=66.30 Aligned_cols=59 Identities=32% Similarity=0.477 Sum_probs=54.6
Q ss_pred cceeEEEeeccCccccccc--ccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCC
Q 007687 214 ENVRRISLMDNQITNLSEV--ATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAEL 272 (593)
Q Consensus 214 ~~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l 272 (593)
+++++|++++|.+..++.. ..+++|++|++++|.++.+++..|.++++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4789999999999999864 8899999999999999999999899999999999999864
No 43
>PLN03150 hypothetical protein; Provisional
Probab=98.32 E-value=1.5e-06 Score=94.65 Aligned_cols=108 Identities=24% Similarity=0.394 Sum_probs=90.4
Q ss_pred ceeEEEeeccCccc-cccc-ccCCcccEEEccCccCc-ccchhhhccCCCCcEEEcCCCCCC-cCCcccCCCCCCcEeeC
Q 007687 215 NVRRISLMDNQITN-LSEV-ATCRHLLTLFLNQNKLQ-MIHNDFFRFMPSLKVLNLSHAELT-ELPVGISDLVSLQHLDL 290 (593)
Q Consensus 215 ~lr~L~l~~~~~~~-l~~~-~~~~~Lr~L~l~~~~l~-~~~~~~~~~l~~Lr~L~L~~~~l~-~lp~~i~~L~~L~~L~L 290 (593)
.++.|+++++.+.. +|.. ..+++|+.|++++|.+. .+|.. ++.+++|++|+|++|.+. .+|..+++|++|++|+|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 47889999998875 4433 78999999999999987 45555 899999999999999998 78999999999999999
Q ss_pred CCCcCc-ccchhhhcc-ccCceeeccccccccccc
Q 007687 291 SESDIS-ELPGELKAL-VNLKCLNLEWTRNLITIP 323 (593)
Q Consensus 291 ~~~~i~-~lp~~i~~L-~~L~~L~l~~~~~l~~lp 323 (593)
++|.++ .+|..++.+ .++..+++.+|..+...|
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 999888 899888764 577888988885544443
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.29 E-value=1.9e-08 Score=103.98 Aligned_cols=102 Identities=29% Similarity=0.380 Sum_probs=50.1
Q ss_pred CCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCc-ccCCCCCCcEeeCCCCcCcccchhhhccccCceeec
Q 007687 235 CRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPV-GISDLVSLQHLDLSESDISELPGELKALVNLKCLNL 313 (593)
Q Consensus 235 ~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l 313 (593)
++.|+.|+|++|++++.. ++..+++|+.|||++|.+..+|. +...+ +|+.|++++|.+++| .+|.+|.+|+.||+
T Consensus 186 l~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL-~gie~LksL~~LDl 261 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTL-RGIENLKSLYGLDL 261 (1096)
T ss_pred HHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhh-hheeeeecccHHHhh-hhHHhhhhhhccch
Confidence 344555555555555444 24555555555555555555543 12222 255555555555554 23555555555555
Q ss_pred ccccccc---ccchhhcCCCccCceeeccCCCC
Q 007687 314 EWTRNLI---TIPRQLISNLSRLHVLRMFGASH 343 (593)
Q Consensus 314 ~~~~~l~---~lp~~~i~~l~~L~~L~l~~~~~ 343 (593)
++| .+. .+-+ ++.|..|+.|++.|+..
T Consensus 262 syN-ll~~hseL~p--LwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 262 SYN-LLSEHSELEP--LWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hHh-hhhcchhhhH--HHHHHHHHHHhhcCCcc
Confidence 555 222 1222 44455555555555543
No 45
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.24 E-value=3.6e-07 Score=87.23 Aligned_cols=94 Identities=19% Similarity=0.179 Sum_probs=46.5
Q ss_pred cccccccccceeeccccccceeeeccCCcccccCCCCccEEEEeCCCCCCCCcc-------cccCCCCCEEeeccCccch
Q 007687 416 ALADLKQLNRLRIAECKKLEELKMDYTGEVQQFVFHSLKKVEIVNSYKLKDLTF-------LVFAPNLESIEVLGCVAME 488 (593)
Q Consensus 416 ~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-------l~~l~~L~~L~l~~c~~l~ 488 (593)
++..+++|+.|++.+|..... ....+. ..-+.+++|+.|.+.+| .+++=-. -...|+|+.|.+.+|..-.
T Consensus 208 al~~~~~LevLdl~DNtft~e-gs~~La-kaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~ 284 (382)
T KOG1909|consen 208 ALEHCPHLEVLDLRDNTFTLE-GSVALA-KALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNEITR 284 (382)
T ss_pred HHHhCCcceeeecccchhhhH-HHHHHH-HHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcchhHH
Confidence 455667777777766653321 000111 11223567777777777 4443211 2346777777777764322
Q ss_pred hhcccCcccccccccCCCCCCcccceeccccc
Q 007687 489 EMVSVGKFAAVPEVTANLNPFAKLQYLDLVGA 520 (593)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 520 (593)
+-.. .+......-|.|+.|.|++|
T Consensus 285 da~~--------~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 285 DAAL--------ALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred HHHH--------HHHHHHhcchhhHHhcCCcc
Confidence 2110 11113334566777777664
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.20 E-value=2e-07 Score=97.02 Aligned_cols=126 Identities=33% Similarity=0.497 Sum_probs=84.5
Q ss_pred CcceeEEEeeccCccc-ccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCcccCCCCCCcEeeCC
Q 007687 213 WENVRRISLMDNQITN-LSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISDLVSLQHLDLS 291 (593)
Q Consensus 213 ~~~lr~L~l~~~~~~~-l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~ 291 (593)
+..+..+++..|.+.. ......+.+|..|++.+|.+..+... +..+.+|++|++++|.|+.+. .+..+..|+.|++.
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLS 148 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheecccccccccc-chhhccchhhheec
Confidence 3455566666666666 33346777777788877777776653 466777888888887777774 56666777777787
Q ss_pred CCcCcccchhhhccccCceeeccccccccccch-hhcCCCccCceeeccCCCC
Q 007687 292 ESDISELPGELKALVNLKCLNLEWTRNLITIPR-QLISNLSRLHVLRMFGASH 343 (593)
Q Consensus 292 ~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~ 343 (593)
+|.|+.++. +..+++|+.+++++| .+..+.. . ...+.+|+.+.+.++..
T Consensus 149 ~N~i~~~~~-~~~l~~L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 149 GNLISDISG-LESLKSLKLLDLSYN-RIVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred cCcchhccC-CccchhhhcccCCcc-hhhhhhhhh-hhhccchHHHhccCCch
Confidence 777776653 445777777777777 4555544 1 25667777777766654
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.19 E-value=4.2e-07 Score=94.54 Aligned_cols=126 Identities=26% Similarity=0.420 Sum_probs=99.6
Q ss_pred CCCCcceeEEEeeccCcccccc-cccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCcccCCCCCCcEe
Q 007687 210 VKGWENVRRISLMDNQITNLSE-VATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISDLVSLQHL 288 (593)
Q Consensus 210 ~~~~~~lr~L~l~~~~~~~l~~-~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L 288 (593)
...+.++..+++.+|.+..+.. ...+.+|++|++++|.++++.. +..+..|+.|++++|.+..++ .+..+..|+.+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l 167 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDIS-GLESLKSLKLL 167 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhcc-CCccchhhhcc
Confidence 4566899999999999999988 7889999999999999998877 788888999999999998885 56668999999
Q ss_pred eCCCCcCcccchh-hhccccCceeeccccccccccchhhcCCCccCceeeccCC
Q 007687 289 DLSESDISELPGE-LKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGA 341 (593)
Q Consensus 289 ~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~ 341 (593)
++++|.+..+... ...+.+|+.+++.++ .+..+.. +..+..+..+++..+
T Consensus 168 ~l~~n~i~~ie~~~~~~~~~l~~l~l~~n-~i~~i~~--~~~~~~l~~~~l~~n 218 (414)
T KOG0531|consen 168 DLSYNRIVDIENDELSELISLEELDLGGN-SIREIEG--LDLLKKLVLLSLLDN 218 (414)
T ss_pred cCCcchhhhhhhhhhhhccchHHHhccCC-chhcccc--hHHHHHHHHhhcccc
Confidence 9999999888764 578899999999988 3333332 333444444444433
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.19 E-value=1.7e-06 Score=57.75 Aligned_cols=38 Identities=39% Similarity=0.677 Sum_probs=18.3
Q ss_pred CCcEEEcCCCCCCcCCcccCCCCCCcEeeCCCCcCccc
Q 007687 261 SLKVLNLSHAELTELPVGISDLVSLQHLDLSESDISEL 298 (593)
Q Consensus 261 ~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~l 298 (593)
+|++|++++|.++.+|..+++|++|++|++++|.++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 44555555555555544455555555555555554444
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=8.6e-07 Score=82.69 Aligned_cols=220 Identities=14% Similarity=0.101 Sum_probs=107.1
Q ss_pred EEEeeccCccccccc----ccCCcccEEEccCccCcccch--hhhccCCCCcEEEcCCCCCCcCCccc-CCCCCCcEeeC
Q 007687 218 RISLMDNQITNLSEV----ATCRHLLTLFLNQNKLQMIHN--DFFRFMPSLKVLNLSHAELTELPVGI-SDLVSLQHLDL 290 (593)
Q Consensus 218 ~L~l~~~~~~~l~~~----~~~~~Lr~L~l~~~~l~~~~~--~~~~~l~~Lr~L~L~~~~l~~lp~~i-~~L~~L~~L~L 290 (593)
.+.+.+..+...... ..++.++.+++.+|.+++..+ .++.+|++|++|+|+.|++..--... -.+.+|++|-|
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVL 128 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVL 128 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEE
Confidence 455555555543332 566677777777776654322 23556777777777777554221111 34566677776
Q ss_pred CCCcCc--ccchhhhccccCceeecccccccccc--chhhcCCC-ccCceeeccCCCCCCCCCCCccccccCCcccchhh
Q 007687 291 SESDIS--ELPGELKALVNLKCLNLEWTRNLITI--PRQLISNL-SRLHVLRMFGASHNAFDGASEDSILFGGGALIVEE 365 (593)
Q Consensus 291 ~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~l--p~~~i~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (593)
.++.+. .+......++.++.|.++.| .+..+ ....+... +.+++|+..+|.
T Consensus 129 NgT~L~w~~~~s~l~~lP~vtelHmS~N-~~rq~n~Dd~c~e~~s~~v~tlh~~~c~----------------------- 184 (418)
T KOG2982|consen 129 NGTGLSWTQSTSSLDDLPKVTELHMSDN-SLRQLNLDDNCIEDWSTEVLTLHQLPCL----------------------- 184 (418)
T ss_pred cCCCCChhhhhhhhhcchhhhhhhhccc-hhhhhccccccccccchhhhhhhcCCcH-----------------------
Confidence 666433 44444555555666655555 11111 00001110 122222222222
Q ss_pred hcCCCCCceEEEEecCccchhhhhhcccccccceEEEecccCCCceeeeccccccccccceeeccccccceeeeccCCcc
Q 007687 366 LLGLKYLEVISFTLRSSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIAECKKLEELKMDYTGEV 445 (593)
Q Consensus 366 L~~l~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~ 445 (593)
.....+.....+..+++..+.+..+.-.+...-....++|.+.-|++..+.. .+|..-.
T Consensus 185 ----------------~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~i-----dswasvD 243 (418)
T KOG2982|consen 185 ----------------EQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNI-----DSWASVD 243 (418)
T ss_pred ----------------HHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhccccc-----ccHHHHH
Confidence 1111122222223335555555554322222223344556666666665432 2332222
Q ss_pred cccCCCCccEEEEeCCCCCCCCcc-------cccCCCCCEEeec
Q 007687 446 QQFVFHSLKKVEIVNSYKLKDLTF-------LVFAPNLESIEVL 482 (593)
Q Consensus 446 ~~~~l~~L~~L~l~~c~~l~~l~~-------l~~l~~L~~L~l~ 482 (593)
....|+.|..|.+.+.+-...+.. ++.+++++.|+=+
T Consensus 244 ~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 244 ALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred HHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 233578888888887765554432 6778888887654
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.10 E-value=3.4e-06 Score=56.30 Aligned_cols=41 Identities=41% Similarity=0.584 Sum_probs=34.8
Q ss_pred CCCcEeeCCCCcCcccchhhhccccCceeeccccccccccch
Q 007687 283 VSLQHLDLSESDISELPGELKALVNLKCLNLEWTRNLITIPR 324 (593)
Q Consensus 283 ~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~ 324 (593)
++|++|++++|+|+++|..+++|++|++|++++| .++++|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 4799999999999999998999999999999999 6777765
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.08 E-value=1.3e-07 Score=98.16 Aligned_cols=110 Identities=31% Similarity=0.297 Sum_probs=90.5
Q ss_pred CCCcceeEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCcccCCCCCCcEeeC
Q 007687 211 KGWENVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISDLVSLQHLDL 290 (593)
Q Consensus 211 ~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L 290 (593)
.-++.+++|+++.|++.....+..+++|++||++.|.++.+|.-....++ |..|.+++|.++++- .|.+|.+|+.||+
T Consensus 184 qll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~-gie~LksL~~LDl 261 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLR-GIENLKSLYGLDL 261 (1096)
T ss_pred HHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhh-hHHhhhhhhccch
Confidence 34468999999999999988779999999999999999988874344555 999999999999884 8999999999999
Q ss_pred CCCcCcccc--hhhhccccCceeeccccccccccc
Q 007687 291 SESDISELP--GELKALVNLKCLNLEWTRNLITIP 323 (593)
Q Consensus 291 ~~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~~lp 323 (593)
+.|-+.... .-++.|..|+.|.+.+|. +-.-|
T Consensus 262 syNll~~hseL~pLwsLs~L~~L~LeGNP-l~c~p 295 (1096)
T KOG1859|consen 262 SYNLLSEHSELEPLWSLSSLIVLWLEGNP-LCCAP 295 (1096)
T ss_pred hHhhhhcchhhhHHHHHHHHHHHhhcCCc-cccCH
Confidence 999665322 237788999999999994 43334
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.03 E-value=1.5e-06 Score=94.43 Aligned_cols=79 Identities=23% Similarity=0.349 Sum_probs=33.9
Q ss_pred CcccEEEccCcc-C-cccchhhhccCCCCcEEEcCCCCCC--cCCcccCCCCCCcEeeCCCCcCcccchhhhccccCcee
Q 007687 236 RHLLTLFLNQNK-L-QMIHNDFFRFMPSLKVLNLSHAELT--ELPVGISDLVSLQHLDLSESDISELPGELKALVNLKCL 311 (593)
Q Consensus 236 ~~Lr~L~l~~~~-l-~~~~~~~~~~l~~Lr~L~L~~~~l~--~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L 311 (593)
.+|+.|+++|.. + ...+...-..+|+|+.|.+++-.+. ++-.-..++++|+.||+++|+++.+ .++++|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 345555555443 1 1222222223455555555544332 1222233444555555555555444 344445555544
Q ss_pred eccc
Q 007687 312 NLEW 315 (593)
Q Consensus 312 ~l~~ 315 (593)
.+.+
T Consensus 201 ~mrn 204 (699)
T KOG3665|consen 201 SMRN 204 (699)
T ss_pred hccC
Confidence 4443
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.02 E-value=7.9e-07 Score=73.39 Aligned_cols=92 Identities=20% Similarity=0.320 Sum_probs=60.0
Q ss_pred ccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCcccCCCCCCcEeeCCCCcCcccchhhhccccCceee
Q 007687 233 ATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISDLVSLQHLDLSESDISELPGELKALVNLKCLN 312 (593)
Q Consensus 233 ~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~ 312 (593)
....+|...++++|.+.++|+.+-.+++.++.|+|++|.+..+|..+..++.|+.|+++.|.+...|..|..|.+|-.|+
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 44555666666666666666665555566667777777777777666667777777777776666666666666666666
Q ss_pred ccccccccccchh
Q 007687 313 LEWTRNLITIPRQ 325 (593)
Q Consensus 313 l~~~~~l~~lp~~ 325 (593)
..++ ....+|..
T Consensus 130 s~~n-a~~eid~d 141 (177)
T KOG4579|consen 130 SPEN-ARAEIDVD 141 (177)
T ss_pred CCCC-ccccCcHH
Confidence 6665 44455543
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.98 E-value=3.1e-05 Score=77.74 Aligned_cols=63 Identities=17% Similarity=0.362 Sum_probs=38.5
Q ss_pred ccCCCCcEEEcCCCCCCcCCcccCCCCCCcEeeCCCC-cCcccchhhhccccCceeeccccccccccch
Q 007687 257 RFMPSLKVLNLSHAELTELPVGISDLVSLQHLDLSES-DISELPGELKALVNLKCLNLEWTRNLITIPR 324 (593)
Q Consensus 257 ~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~-~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~ 324 (593)
..+.+++.|++++|.++.+|. + ..+|++|.+++| .++.+|..+. .+|++|++++|..+..+|.
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc
Confidence 335667777777776666661 2 235777777665 5566665442 4677777777655555654
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.90 E-value=1.5e-05 Score=70.50 Aligned_cols=103 Identities=27% Similarity=0.406 Sum_probs=77.1
Q ss_pred cceeEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCC--cccCCCCCCcEeeCC
Q 007687 214 ENVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELP--VGISDLVSLQHLDLS 291 (593)
Q Consensus 214 ~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp--~~i~~L~~L~~L~L~ 291 (593)
.....+++++|.+..++.+..++.|.+|.+.+|+++.+.+..-..+++|..|.|.+|++.++- ..+..++.|++|.+-
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 356678888888888888888888889999888888888875556777888888888877663 246677788888888
Q ss_pred CCcCcccch----hhhccccCceeecccc
Q 007687 292 ESDISELPG----ELKALVNLKCLNLEWT 316 (593)
Q Consensus 292 ~~~i~~lp~----~i~~L~~L~~L~l~~~ 316 (593)
+|.+++.+. .+.++++|++||+..-
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhhh
Confidence 887765542 2566667777766543
No 56
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.87 E-value=2.3e-06 Score=81.82 Aligned_cols=120 Identities=17% Similarity=0.178 Sum_probs=64.3
Q ss_pred hhcCCCCCceEEEEecCc--cchhhhhhcccccccceEEEecccCCCc--eee-eccccccccccceeeccccccceeee
Q 007687 365 ELLGLKYLEVISFTLRSS--HGLQSVLSSHKLRCCTRALLLQCFNDST--SLE-VSALADLKQLNRLRIAECKKLEELKM 439 (593)
Q Consensus 365 ~L~~l~~L~~L~i~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~-~~~l~~l~~L~~L~l~~~~~~~~l~~ 439 (593)
.++..+.|+.+.+..++. .+...+.......++|+.|+|+++.-.. ... -..+..+++|+.|+++.|..-.. ..
T Consensus 180 ~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~-Ga 258 (382)
T KOG1909|consen 180 AFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENE-GA 258 (382)
T ss_pred HHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccc-cH
Confidence 344455566555554432 2223333344445567777776653211 111 13456677888888888753221 11
Q ss_pred ccCCcccccCCCCccEEEEeCCCCCCC-----C-cccccCCCCCEEeeccCcc
Q 007687 440 DYTGEVQQFVFHSLKKVEIVNSYKLKD-----L-TFLVFAPNLESIEVLGCVA 486 (593)
Q Consensus 440 ~~~~~~~~~~l~~L~~L~l~~c~~l~~-----l-~~l~~l~~L~~L~l~~c~~ 486 (593)
..+...-....|+|+.|.+.+| .++. + ..+...|.|+.|.|++|..
T Consensus 259 ~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 259 IAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 1111011124788888888887 3432 1 1255688899999998865
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.84 E-value=4.4e-05 Score=76.66 Aligned_cols=78 Identities=23% Similarity=0.406 Sum_probs=51.0
Q ss_pred cceeEEEeeccCcccccccccCCcccEEEccCcc-CcccchhhhccCCCCcEEEcCCC-CCCcCCcccCCCCCCcEeeCC
Q 007687 214 ENVRRISLMDNQITNLSEVATCRHLLTLFLNQNK-LQMIHNDFFRFMPSLKVLNLSHA-ELTELPVGISDLVSLQHLDLS 291 (593)
Q Consensus 214 ~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~-l~~~~~~~~~~l~~Lr~L~L~~~-~l~~lp~~i~~L~~L~~L~L~ 291 (593)
..+++|+++++.++.+|.+ ..+|++|.+++|. ++.+|.. + ..+|++|++++| .+..+|. +|++|++.
T Consensus 52 ~~l~~L~Is~c~L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~ 120 (426)
T PRK15386 52 RASGRLYIKDCDIESLPVL--PNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLPE------SVRSLEIK 120 (426)
T ss_pred cCCCEEEeCCCCCcccCCC--CCCCcEEEccCCCCcccCCch-h--hhhhhheEccCccccccccc------ccceEEeC
Confidence 5677888888877777732 2358888887755 6666654 2 357888888887 6767774 35555665
Q ss_pred CC---cCcccchhh
Q 007687 292 ES---DISELPGEL 302 (593)
Q Consensus 292 ~~---~i~~lp~~i 302 (593)
.+ .+..+|+++
T Consensus 121 ~n~~~~L~~LPssL 134 (426)
T PRK15386 121 GSATDSIKNVPNGL 134 (426)
T ss_pred CCCCcccccCcchH
Confidence 54 345666643
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.84 E-value=4.6e-06 Score=68.99 Aligned_cols=87 Identities=28% Similarity=0.379 Sum_probs=80.4
Q ss_pred cceeEEEeeccCccccccc--ccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCcccCCCCCCcEeeCC
Q 007687 214 ENVRRISLMDNQITNLSEV--ATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISDLVSLQHLDLS 291 (593)
Q Consensus 214 ~~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~ 291 (593)
..+..+++++|.++++|.. .+++.+.+|++.+|.++++|.+ +..++.||.|+++.|.+...|.-|..|.+|-+|+..
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCccccchHHHHHHHhHHHhcCC
Confidence 4788899999999998876 7788999999999999999999 899999999999999999999999889999999999
Q ss_pred CCcCcccchh
Q 007687 292 ESDISELPGE 301 (593)
Q Consensus 292 ~~~i~~lp~~ 301 (593)
++.+..+|-.
T Consensus 132 ~na~~eid~d 141 (177)
T KOG4579|consen 132 ENARAEIDVD 141 (177)
T ss_pred CCccccCcHH
Confidence 9999988855
No 59
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=3.7e-06 Score=78.56 Aligned_cols=228 Identities=18% Similarity=0.132 Sum_probs=121.1
Q ss_pred cccEEEccCccCcccch--hhhccCCCCcEEEcCCCCCCc---CCcccCCCCCCcEeeCCCCcCc----ccchhhhcccc
Q 007687 237 HLLTLFLNQNKLQMIHN--DFFRFMPSLKVLNLSHAELTE---LPVGISDLVSLQHLDLSESDIS----ELPGELKALVN 307 (593)
Q Consensus 237 ~Lr~L~l~~~~l~~~~~--~~~~~l~~Lr~L~L~~~~l~~---lp~~i~~L~~L~~L~L~~~~i~----~lp~~i~~L~~ 307 (593)
-+..|.+.++.+..... .+-..+.+++.|||.+|.++. +-.-..+|++|++|+|+.|.+. ++| ..+.+
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~n 122 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKN 122 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccc
Confidence 34456666666654432 222456788888998887763 4344678888888888888554 444 24568
Q ss_pred CceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccchhhhcCCCCCceEEEEecCccchhh
Q 007687 308 LKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELLGLKYLEVISFTLRSSHGLQS 387 (593)
Q Consensus 308 L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~ 387 (593)
|++|-+.++..-..-.......++.+++|+++.+... .+.+..+..+...
T Consensus 123 l~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r-----------------------------q~n~Dd~c~e~~s- 172 (418)
T KOG2982|consen 123 LRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR-----------------------------QLNLDDNCIEDWS- 172 (418)
T ss_pred eEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhh-----------------------------hhccccccccccc-
Confidence 8888887763211111223566777777777755332 2222211111111
Q ss_pred hhhcccccccceEEEecccCCCceeeeccc-cccccccceeeccccccceeeeccCCcccccCCCCccEEEEeCCCCCCC
Q 007687 388 VLSSHKLRCCTRALLLQCFNDSTSLEVSAL-ADLKQLNRLRIAECKKLEELKMDYTGEVQQFVFHSLKKVEIVNSYKLKD 466 (593)
Q Consensus 388 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 466 (593)
+.+.+|+...|....-.....+ .-+|++..+.+..|+.-. .... .....++.+-.|.|... ++.+
T Consensus 173 --------~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~-~s~e----k~se~~p~~~~LnL~~~-~ids 238 (418)
T KOG2982|consen 173 --------TEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKT-ESSE----KGSEPFPSLSCLNLGAN-NIDS 238 (418)
T ss_pred --------hhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccc-hhhc----ccCCCCCcchhhhhccc-cccc
Confidence 1222222222211000000111 235777777777775322 1111 11224666777777665 5555
Q ss_pred Cc---ccccCCCCCEEeeccCccchhhcccCcccccccccCCCCCCcccceecc
Q 007687 467 LT---FLVFAPNLESIEVLGCVAMEEMVSVGKFAAVPEVTANLNPFAKLQYLDL 517 (593)
Q Consensus 467 l~---~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 517 (593)
+. .+..+|.|..|.+.+++..+.+-..+ ...-.++.+++++.|+=
T Consensus 239 wasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~e------rr~llIaRL~~v~vLNG 286 (418)
T KOG2982|consen 239 WASVDALNGFPQLVDLRVSENPLSDPLRGGE------RRFLLIARLTKVQVLNG 286 (418)
T ss_pred HHHHHHHcCCchhheeeccCCcccccccCCc------ceEEEEeeccceEEecC
Confidence 44 37788999999998888766543311 01113455677776653
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.79 E-value=1.6e-05 Score=86.52 Aligned_cols=129 Identities=19% Similarity=0.289 Sum_probs=92.9
Q ss_pred cceeEEEeeccCccccc---cc-ccCCcccEEEccCccCccc-chhhhccCCCCcEEEcCCCCCCcCCcccCCCCCCcEe
Q 007687 214 ENVRRISLMDNQITNLS---EV-ATCRHLLTLFLNQNKLQMI-HNDFFRFMPSLKVLNLSHAELTELPVGISDLVSLQHL 288 (593)
Q Consensus 214 ~~lr~L~l~~~~~~~l~---~~-~~~~~Lr~L~l~~~~l~~~-~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L 288 (593)
.+|++|+++|...-.-. .. ..+|.|++|.+.+-.+..- -...+..+++|+.||+|+++++.+ .++++|++|++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 58999999885433211 11 6799999999988765322 123367899999999999999999 689999999999
Q ss_pred eCCCCcCcccc--hhhhccccCceeecccccccccc--ch---hhcCCCccCceeeccCCCC
Q 007687 289 DLSESDISELP--GELKALVNLKCLNLEWTRNLITI--PR---QLISNLSRLHVLRMFGASH 343 (593)
Q Consensus 289 ~L~~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~~l--p~---~~i~~l~~L~~L~l~~~~~ 343 (593)
.+++-.+..-+ ..+-+|++|++||+|..+..... .. +.-..|++|+.|+.++...
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 99987776433 45778999999999987543321 11 0123478888888886654
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.56 E-value=8.3e-05 Score=65.98 Aligned_cols=106 Identities=22% Similarity=0.280 Sum_probs=69.3
Q ss_pred CCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCccc-CCCCCCcEeeCCCCcCcccc--hhhhccccCcee
Q 007687 235 CRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGI-SDLVSLQHLDLSESDISELP--GELKALVNLKCL 311 (593)
Q Consensus 235 ~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i-~~L~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L 311 (593)
......+++.+|.+..++. |..++.|..|.|.+|.|+.+-..+ ..+++|..|.|.+|+|.++- ..+..+++|++|
T Consensus 41 ~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 4456677888887776665 677888888888888888774444 34556888888888776553 225566777777
Q ss_pred eccccccccccc---hhhcCCCccCceeeccCCCC
Q 007687 312 NLEWTRNLITIP---RQLISNLSRLHVLRMFGASH 343 (593)
Q Consensus 312 ~l~~~~~l~~lp---~~~i~~l~~L~~L~l~~~~~ 343 (593)
.+-+|. +..-+ .-++.++++|++|++..+..
T Consensus 119 tll~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 119 TLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred eecCCc-hhcccCceeEEEEecCcceEeehhhhhH
Confidence 776662 32221 22466777777777766543
No 62
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.24 E-value=6.1e-05 Score=80.43 Aligned_cols=37 Identities=24% Similarity=0.196 Sum_probs=16.9
Q ss_pred cceecccccccCcccCCCCC--CCCccceeeeccCcCCC
Q 007687 512 LQYLDLVGAINLKSIYWMPL--SFPLLKYLRAMNCHKLK 548 (593)
Q Consensus 512 L~~L~l~~c~~L~~l~~~~~--~~~~L~~L~i~~C~~L~ 548 (593)
++.|.+..|...+.-..... .+..++.+.+.+|+...
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVIT 441 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCccccc
Confidence 55666655544432221111 14445555555555443
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.15 E-value=0.00019 Score=66.47 Aligned_cols=107 Identities=28% Similarity=0.265 Sum_probs=61.0
Q ss_pred CCcccEEEccCccCcccchhhhccCCCCcEEEcCCC--CCC-cCCcccCCCCCCcEeeCCCCcCcccc--hhhhccccCc
Q 007687 235 CRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHA--ELT-ELPVGISDLVSLQHLDLSESDISELP--GELKALVNLK 309 (593)
Q Consensus 235 ~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~--~l~-~lp~~i~~L~~L~~L~L~~~~i~~lp--~~i~~L~~L~ 309 (593)
+..|..|++.+..++.+.. |..|++|++|+++.| .+. .++.....+++|++|++++|+|..+. .....+.+|.
T Consensus 42 ~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 3444445555555444433 455667777777777 333 44444555577777777777655321 2255667777
Q ss_pred eeecccccccc--ccchhhcCCCccCceeeccCCCC
Q 007687 310 CLNLEWTRNLI--TIPRQLISNLSRLHVLRMFGASH 343 (593)
Q Consensus 310 ~L~l~~~~~l~--~lp~~~i~~l~~L~~L~l~~~~~ 343 (593)
.|++.+|.... .--..++.-+++|..|+...+..
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhccccccccCC
Confidence 77777773222 11223455677788777766543
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.11 E-value=3.9e-05 Score=71.24 Aligned_cols=104 Identities=24% Similarity=0.203 Sum_probs=71.1
Q ss_pred CCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCcccCCCCCCcEeeCCCCcCcccc--hhhhccccCceee
Q 007687 235 CRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISDLVSLQHLDLSESDISELP--GELKALVNLKCLN 312 (593)
Q Consensus 235 ~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~ 312 (593)
+.+.+.|+.-||.+++|.- ..+|+.|++|.|+-|.|++|. .+..+++|+.|.|+.|.|.++. .-+.++++|+.|-
T Consensus 18 l~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHHHH--HHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 4455667777777766644 577888888888888888773 5777788888888888777665 3367788888888
Q ss_pred ccccccccccch----hhcCCCccCceeeccCC
Q 007687 313 LEWTRNLITIPR----QLISNLSRLHVLRMFGA 341 (593)
Q Consensus 313 l~~~~~l~~lp~----~~i~~l~~L~~L~l~~~ 341 (593)
|..|.....-+. .++.-|++|+.|+-..+
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~V 127 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPV 127 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhccCccc
Confidence 877754443332 23556777777764433
No 65
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.99 E-value=0.00013 Score=77.84 Aligned_cols=58 Identities=19% Similarity=0.186 Sum_probs=28.6
Q ss_pred eecccccccC-cccCCCCCCCCccceeeeccCcCCCCCCCCCC---cccccceEEecccccc
Q 007687 514 YLDLVGAINL-KSIYWMPLSFPLLKYLRAMNCHKLKKLPFDSN---SARERNIVISGYTKWW 571 (593)
Q Consensus 514 ~L~l~~c~~L-~~l~~~~~~~~~L~~L~i~~C~~L~~lP~~~~---~~~l~~l~I~~~~~~~ 571 (593)
.+.+.+|+.+ ..+......+..++.|.+..|...+.--.... ...++.+.+.+|+..+
T Consensus 380 ~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 380 ELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVIT 441 (482)
T ss_pred HHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCccccc
Confidence 3444555555 22222223334488888888876655221111 1134555566665444
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.80 E-value=0.00079 Score=62.53 Aligned_cols=104 Identities=25% Similarity=0.299 Sum_probs=78.5
Q ss_pred CcceeEEEeeccCcccccccccCCcccEEEccCcc--Cc-ccchhhhccCCCCcEEEcCCCCCCcCC--cccCCCCCCcE
Q 007687 213 WENVRRISLMDNQITNLSEVATCRHLLTLFLNQNK--LQ-MIHNDFFRFMPSLKVLNLSHAELTELP--VGISDLVSLQH 287 (593)
Q Consensus 213 ~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~--l~-~~~~~~~~~l~~Lr~L~L~~~~l~~lp--~~i~~L~~L~~ 287 (593)
...+..+++.+..++.+..+..+++|+.|.++.|. +. .++.. ...+++|++|++++|.+..+. .....+.+|..
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 35777788888778877778899999999999994 33 33333 456799999999999877431 24677888999
Q ss_pred eeCCCCcCcccc----hhhhccccCceeeccccc
Q 007687 288 LDLSESDISELP----GELKALVNLKCLNLEWTR 317 (593)
Q Consensus 288 L~L~~~~i~~lp----~~i~~L~~L~~L~l~~~~ 317 (593)
|++.+|..+.+- ..+.-+++|++||-....
T Consensus 121 Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 121 LDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 999999777654 235668899999877663
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.45 E-value=0.00017 Score=67.14 Aligned_cols=97 Identities=28% Similarity=0.292 Sum_probs=65.1
Q ss_pred cceeEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCc--ccCCCCCCcEeeCC
Q 007687 214 ENVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPV--GISDLVSLQHLDLS 291 (593)
Q Consensus 214 ~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~--~i~~L~~L~~L~L~ 291 (593)
.+++.|+..++.+.++.-..+|+.|++|.|+-|.++.+.+ +..|+.|+.|.|+.|.|..+-+ -+.++++|++|-|.
T Consensus 19 ~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 3566677777777776666777777777777777777766 6777777777777777765532 45677777777777
Q ss_pred CCcCc-ccc-----hhhhccccCceee
Q 007687 292 ESDIS-ELP-----GELKALVNLKCLN 312 (593)
Q Consensus 292 ~~~i~-~lp-----~~i~~L~~L~~L~ 312 (593)
.|... .-+ ..+..|++|+.||
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCCcccccchhHHHHHHHHcccchhcc
Confidence 66221 111 2355677777776
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.43 E-value=0.0092 Score=50.72 Aligned_cols=58 Identities=21% Similarity=0.407 Sum_probs=21.4
Q ss_pred ccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCc-ccCCCCCCcEeeCCC
Q 007687 233 ATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPV-GISDLVSLQHLDLSE 292 (593)
Q Consensus 233 ~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~ 292 (593)
..+++|+.+.+.++ +..++...|..++.|+.+.+.. .+..++. .+..+.+|+.+++..
T Consensus 32 ~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 32 SNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPS 90 (129)
T ss_dssp TT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETT
T ss_pred cccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCc
Confidence 34444444444442 4444444444444455554433 2333322 333344444444433
No 69
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.42 E-value=0.0007 Score=62.93 Aligned_cols=16 Identities=19% Similarity=0.164 Sum_probs=8.7
Q ss_pred ccccccccceeecccc
Q 007687 417 LADLKQLNRLRIAECK 432 (593)
Q Consensus 417 l~~l~~L~~L~l~~~~ 432 (593)
+..+.+|+.|+|..+.
T Consensus 210 l~y~~~LevLDlqDNt 225 (388)
T COG5238 210 LFYSHSLEVLDLQDNT 225 (388)
T ss_pred HHHhCcceeeeccccc
Confidence 3344566666665554
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.09 E-value=0.0024 Score=35.40 Aligned_cols=16 Identities=38% Similarity=0.750 Sum_probs=6.4
Q ss_pred CcEeeCCCCcCcccch
Q 007687 285 LQHLDLSESDISELPG 300 (593)
Q Consensus 285 L~~L~L~~~~i~~lp~ 300 (593)
|++|++++|+++.+|+
T Consensus 2 L~~Ldls~n~l~~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPS 17 (22)
T ss_dssp ESEEEETSSEESEEGT
T ss_pred ccEEECCCCcCEeCCh
Confidence 3344444444434433
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.07 E-value=0.0024 Score=35.36 Aligned_cols=21 Identities=38% Similarity=0.612 Sum_probs=14.3
Q ss_pred CCcEEEcCCCCCCcCCcccCC
Q 007687 261 SLKVLNLSHAELTELPVGISD 281 (593)
Q Consensus 261 ~Lr~L~L~~~~l~~lp~~i~~ 281 (593)
+|++|||++|.++.+|.+|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 467777777777777766654
No 72
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.58 E-value=0.0094 Score=55.69 Aligned_cols=142 Identities=20% Similarity=0.196 Sum_probs=64.8
Q ss_pred cCCCCCCcEeeCCCCcCc-ccc----hhhhccccCceeeccccccccccchhhc-------------CCCccCceeeccC
Q 007687 279 ISDLVSLQHLDLSESDIS-ELP----GELKALVNLKCLNLEWTRNLITIPRQLI-------------SNLSRLHVLRMFG 340 (593)
Q Consensus 279 i~~L~~L~~L~L~~~~i~-~lp----~~i~~L~~L~~L~l~~~~~l~~lp~~~i-------------~~l~~L~~L~l~~ 340 (593)
+-++++|+..+|+.|.+. ..| .-|.+-+.|.||.+++| .++.+..+-| ..-|.|++.....
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 345566666666665443 222 33455566666666666 3332222111 2335555555544
Q ss_pred CCCCCCCCCCccccccCCcccchhhhcCCCCCceEEEEecCccc--hhhhh-hcccccccceEEEecccCCCc--eee-e
Q 007687 341 ASHNAFDGASEDSILFGGGALIVEELLGLKYLEVISFTLRSSHG--LQSVL-SSHKLRCCTRALLLQCFNDST--SLE-V 414 (593)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~--~~~~~-~~~~~~~~L~~L~l~~~~~~~--~~~-~ 414 (593)
+.... +.....-..+....+|+.+.+..++... +..+. .......+|+.|+|..+.-.. +.- -
T Consensus 167 NRlen-----------gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La 235 (388)
T COG5238 167 NRLEN-----------GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLA 235 (388)
T ss_pred chhcc-----------CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHH
Confidence 43320 0011222334455677777777554422 22211 112334577777777653110 000 0
Q ss_pred ccccccccccceeecccc
Q 007687 415 SALADLKQLNRLRIAECK 432 (593)
Q Consensus 415 ~~l~~l~~L~~L~l~~~~ 432 (593)
..+...+.|+.|.+..|-
T Consensus 236 ~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 236 DALCEWNLLRELRLNDCL 253 (388)
T ss_pred HHhcccchhhhccccchh
Confidence 233444556666666553
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.49 E-value=0.039 Score=46.79 Aligned_cols=102 Identities=20% Similarity=0.324 Sum_probs=60.4
Q ss_pred ccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCc-ccCCCCCCcEeeCCCCcCcccch-hhhccccCce
Q 007687 233 ATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPV-GISDLVSLQHLDLSESDISELPG-ELKALVNLKC 310 (593)
Q Consensus 233 ~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~ 310 (593)
..+.+|+.+.+.. .+..++...|..+..|+.+.+.++ +..++. .+..+.+|+++.+.. .+..++. .+..+++|+.
T Consensus 9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred hCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence 5666788888764 577788877888888999988775 676654 577777888888876 5555553 3556888888
Q ss_pred eeccccccccccchhhcCCCccCceeeccC
Q 007687 311 LNLEWTRNLITIPRQLISNLSRLHVLRMFG 340 (593)
Q Consensus 311 L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~ 340 (593)
+++..+ +..++...+.+. +|+.+.+..
T Consensus 86 i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 86 IDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp EEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred cccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 888654 567777767776 888887654
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.85 E-value=0.003 Score=56.36 Aligned_cols=67 Identities=22% Similarity=0.423 Sum_probs=35.3
Q ss_pred cccccccccceeeccccccceeeeccCCcccccCCCCccEEEEeCCCCCCC--CcccccCCCCCEEeeccCcc
Q 007687 416 ALADLKQLNRLRIAECKKLEELKMDYTGEVQQFVFHSLKKVEIVNSYKLKD--LTFLVFAPNLESIEVLGCVA 486 (593)
Q Consensus 416 ~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~--l~~l~~l~~L~~L~l~~c~~ 486 (593)
.+..++.++.|.+.+|..+.+...+.++. ..++|+.|+|++|+.+++ +.++..+++|+.|.|.+-+.
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~~----~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLERLGG----LAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPY 188 (221)
T ss_pred HHhccchhhhheeccccchhhHHHHHhcc----cccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchh
Confidence 34445566666666666554322222221 355666666666666655 33455555666655555443
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.39 E-value=0.024 Score=29.05 Aligned_cols=12 Identities=50% Similarity=0.747 Sum_probs=3.6
Q ss_pred CcEEEcCCCCCC
Q 007687 262 LKVLNLSHAELT 273 (593)
Q Consensus 262 Lr~L~L~~~~l~ 273 (593)
|++|+|++|.++
T Consensus 3 L~~L~l~~n~L~ 14 (17)
T PF13504_consen 3 LRTLDLSNNRLT 14 (17)
T ss_dssp -SEEEETSS--S
T ss_pred cCEEECCCCCCC
Confidence 334444444333
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.33 E-value=0.029 Score=28.75 Aligned_cols=16 Identities=44% Similarity=0.804 Sum_probs=8.0
Q ss_pred CCcEeeCCCCcCcccc
Q 007687 284 SLQHLDLSESDISELP 299 (593)
Q Consensus 284 ~L~~L~L~~~~i~~lp 299 (593)
+|++|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 5666777776666655
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.19 E-value=0.0022 Score=58.29 Aligned_cols=84 Identities=20% Similarity=0.209 Sum_probs=60.9
Q ss_pred ccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCcccCCCCCCcEeeCCCCcCcccchhhhccccCceee
Q 007687 233 ATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISDLVSLQHLDLSESDISELPGELKALVNLKCLN 312 (593)
Q Consensus 233 ~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~ 312 (593)
.......+||++.|++..+... |+.++.|..||++.+.+..+|..++.+..++.+++..|+.+.+|.+.++++++++++
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred hccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence 5566677777777776665555 666777777777777777777777777777777777777777777777777777777
Q ss_pred ccccc
Q 007687 313 LEWTR 317 (593)
Q Consensus 313 l~~~~ 317 (593)
...+.
T Consensus 118 ~k~~~ 122 (326)
T KOG0473|consen 118 QKKTE 122 (326)
T ss_pred hccCc
Confidence 77664
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.87 E-value=0.0014 Score=59.62 Aligned_cols=87 Identities=14% Similarity=0.208 Sum_probs=57.9
Q ss_pred CCCCCcceeEEEeeccCccccccc-ccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCcccCCCCCCcE
Q 007687 209 EVKGWENVRRISLMDNQITNLSEV-ATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISDLVSLQH 287 (593)
Q Consensus 209 ~~~~~~~lr~L~l~~~~~~~l~~~-~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~ 287 (593)
.+......+.|+++.|.+..+... ..+..|..|+++.|.+..+|.+ ++++..++.+++..|.++.+|.+++.++++++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d-~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKD-AKQQRETVNAASHKNNHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhh-HHHHHHHHHHHhhccchhhCCccccccCCcch
Confidence 344556667777776665554433 4556666677777777667766 66777777777777777777777777777777
Q ss_pred eeCCCCcCc
Q 007687 288 LDLSESDIS 296 (593)
Q Consensus 288 L~L~~~~i~ 296 (593)
+++.+|.+.
T Consensus 116 ~e~k~~~~~ 124 (326)
T KOG0473|consen 116 NEQKKTEFF 124 (326)
T ss_pred hhhccCcch
Confidence 777776543
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.80 E-value=0.045 Score=49.07 Aligned_cols=40 Identities=10% Similarity=0.292 Sum_probs=19.9
Q ss_pred ccccceeeccccccceeeeccCCcccccCCCCccEEEEeCCCCCC
Q 007687 421 KQLNRLRIAECKKLEELKMDYTGEVQQFVFHSLKKVEIVNSYKLK 465 (593)
Q Consensus 421 ~~L~~L~l~~~~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 465 (593)
++|+.|+|++|+.+++-...|... +++|+.|.|.+.+.+.
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~-----lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLK-----LKNLRRLHLYDLPYVA 190 (221)
T ss_pred cchheeeccCCCeechhHHHHHHH-----hhhhHHHHhcCchhhh
Confidence 555555555555554433334332 5555555555544333
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.60 E-value=0.22 Score=28.64 Aligned_cols=18 Identities=44% Similarity=0.700 Sum_probs=9.2
Q ss_pred CCCcEeeCCCCcCcccch
Q 007687 283 VSLQHLDLSESDISELPG 300 (593)
Q Consensus 283 ~~L~~L~L~~~~i~~lp~ 300 (593)
.+|++|+|.+|.++.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 345555555555555544
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.60 E-value=0.22 Score=28.64 Aligned_cols=18 Identities=44% Similarity=0.700 Sum_probs=9.2
Q ss_pred CCCcEeeCCCCcCcccch
Q 007687 283 VSLQHLDLSESDISELPG 300 (593)
Q Consensus 283 ~~L~~L~L~~~~i~~lp~ 300 (593)
.+|++|+|.+|.++.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 345555555555555544
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.97 E-value=0.48 Score=27.21 Aligned_cols=17 Identities=41% Similarity=0.710 Sum_probs=8.1
Q ss_pred CCcEEEcCCCCCCcCCc
Q 007687 261 SLKVLNLSHAELTELPV 277 (593)
Q Consensus 261 ~Lr~L~L~~~~l~~lp~ 277 (593)
+|++|+|++|.++.+|.
T Consensus 3 ~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 3 NLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCEEECCCCcCCcCCH
Confidence 44444444444444443
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.97 E-value=0.48 Score=27.21 Aligned_cols=17 Identities=41% Similarity=0.710 Sum_probs=8.1
Q ss_pred CCcEEEcCCCCCCcCCc
Q 007687 261 SLKVLNLSHAELTELPV 277 (593)
Q Consensus 261 ~Lr~L~L~~~~l~~lp~ 277 (593)
+|++|+|++|.++.+|.
T Consensus 3 ~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 3 NLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCEEECCCCcCCcCCH
Confidence 44444444444444443
No 84
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=83.04 E-value=0.71 Score=26.53 Aligned_cols=17 Identities=24% Similarity=0.485 Sum_probs=11.9
Q ss_pred CCccceeeeccCcCCCC
Q 007687 533 FPLLKYLRAMNCHKLKK 549 (593)
Q Consensus 533 ~~~L~~L~i~~C~~L~~ 549 (593)
+|+|++|++++|++++.
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 36777777777777653
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=75.36 E-value=1.8 Score=24.86 Aligned_cols=17 Identities=35% Similarity=0.712 Sum_probs=10.3
Q ss_pred CCcEeeCCCCcCcccch
Q 007687 284 SLQHLDLSESDISELPG 300 (593)
Q Consensus 284 ~L~~L~L~~~~i~~lp~ 300 (593)
+|++|++++|+++++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45666666666666654
No 86
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=66.81 E-value=26 Score=35.43 Aligned_cols=49 Identities=12% Similarity=0.434 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhChHHHHHhHhccccCCcccchhhhhHHHHHHhHHHHH-HHHH
Q 007687 72 KVQGWLSRVDAVKAEADELIRHGSQEIEKLCLGGYCSKNCHSSYKLGKQVAKKLRDKLI-DCWI 134 (593)
Q Consensus 72 ~~~~W~~~l~~l~~~~~~i~~~~l~~~lk~Cf~~yc~s~fp~~~~i~~~~~~~~~~~Li-~~Wi 134 (593)
...-|...++.++.....+.. +..+=.+|+.|| +-|+..|. +.|+ +.|+
T Consensus 292 E~~RW~~~~~~l~~~~~~l~G---D~llaaa~isY~-G~f~~~~R----------~~l~~~~W~ 341 (344)
T PF12777_consen 292 EKERWSEQIEELEEQLKNLVG---DSLLAAAFISYL-GPFTPEYR----------QELLKKMWK 341 (344)
T ss_dssp HHHCCHCHHHHHHHHHHHHHH---HHHHHHHHHHCC-CCTSHHHH----------HHHHHHH--
T ss_pred hhhhHHHHHHHHHHHhcccHH---HHHHHHHHHHHc-CCCCHHHH----------HHHHHHhcc
Confidence 345688877777777766654 334567788999 99999986 5666 5686
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=65.93 E-value=5.1 Score=23.10 Aligned_cols=15 Identities=40% Similarity=0.674 Sum_probs=8.1
Q ss_pred CCCcEeeCCCCcCcc
Q 007687 283 VSLQHLDLSESDISE 297 (593)
Q Consensus 283 ~~L~~L~L~~~~i~~ 297 (593)
.+|++|++++|+|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 455555555555543
No 88
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=63.78 E-value=4 Score=22.74 Aligned_cols=14 Identities=43% Similarity=0.657 Sum_probs=6.2
Q ss_pred CCCcEeeCCCCcCc
Q 007687 283 VSLQHLDLSESDIS 296 (593)
Q Consensus 283 ~~L~~L~L~~~~i~ 296 (593)
++|++|+|++|.|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 45555555555543
No 89
>PF14162 YozD: YozD-like protein
Probab=60.08 E-value=27 Score=23.59 Aligned_cols=40 Identities=18% Similarity=0.385 Sum_probs=28.1
Q ss_pred HHHHhHHHHHHHHHhcCCCCCchhhhHHHhHHHHHHHHHHhccccc
Q 007687 121 VAKKLRDKLIDCWIGEGFLTERDRFVEQNQGYHILGILLHACLLEE 166 (593)
Q Consensus 121 ~~~~~~~~Li~~WiaeGfi~~~~~~~~e~~~~~~~~~L~~~~ll~~ 166 (593)
+|+....+|++ .||++.. .+.++.|.--|+-|+.+|++..
T Consensus 13 IAefFy~eL~k----RGyvP~e--~El~eiADItFeYll~K~iIdE 52 (57)
T PF14162_consen 13 IAEFFYHELVK----RGYVPTE--EELEEIADITFEYLLEKCIIDE 52 (57)
T ss_pred HHHHHHHHHHH----ccCCCcH--HHHHHHHHHHHHHHHHHHhhhh
Confidence 34444455554 4888763 4677888888999999988865
No 90
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=52.24 E-value=0.54 Score=49.51 Aligned_cols=165 Identities=22% Similarity=0.174 Sum_probs=0.0
Q ss_pred CCCCcceeEEEeeccCccc------ccccccC-CcccEEEccCccCc-----ccchhhhccCCCCcEEEcCCCCCC----
Q 007687 210 VKGWENVRRISLMDNQITN------LSEVATC-RHLLTLFLNQNKLQ-----MIHNDFFRFMPSLKVLNLSHAELT---- 273 (593)
Q Consensus 210 ~~~~~~lr~L~l~~~~~~~------l~~~~~~-~~Lr~L~l~~~~l~-----~~~~~~~~~l~~Lr~L~L~~~~l~---- 273 (593)
.....++..|++++|.+.. ....... ..+++|.+..|.++ .+... +....++++++++.|.+.
T Consensus 111 l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~-L~~~~~l~~l~l~~n~l~~~g~ 189 (478)
T KOG4308|consen 111 LKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV-LEKNEHLTELDLSLNGLIELGL 189 (478)
T ss_pred hcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH-HhcccchhHHHHHhcccchhhh
Q ss_pred -cCCcccCC----CCCCcEeeCCCCcCc-----ccchhhhcccc-Cceeeccccccccc----cchhhcCCC-ccCceee
Q 007687 274 -ELPVGISD----LVSLQHLDLSESDIS-----ELPGELKALVN-LKCLNLEWTRNLIT----IPRQLISNL-SRLHVLR 337 (593)
Q Consensus 274 -~lp~~i~~----L~~L~~L~L~~~~i~-----~lp~~i~~L~~-L~~L~l~~~~~l~~----lp~~~i~~l-~~L~~L~ 337 (593)
.++..+.. ..++++|++.+|.++ .+...+...+. ++.|++..|..-.. +.+. +..+ ..+++++
T Consensus 190 ~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~-l~~~~~~l~~l~ 268 (478)
T KOG4308|consen 190 LVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPC-LSVLSETLRVLD 268 (478)
T ss_pred HHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHH-hcccchhhhhhh
Q ss_pred ccCCCCCCCCCCCccccccCCcccchhhhcCCCCCceEEEEecCccchhh
Q 007687 338 MFGASHNAFDGASEDSILFGGGALIVEELLGLKYLEVISFTLRSSHGLQS 387 (593)
Q Consensus 338 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~ 387 (593)
+..|+.. ..........+.....++.+.++.+.......
T Consensus 269 l~~nsi~-----------~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~ 307 (478)
T KOG4308|consen 269 LSRNSIT-----------EKGVRDLAEVLVSCRQLEELSLSNNPLTDYGV 307 (478)
T ss_pred hhcCCcc-----------ccchHHHHHHHhhhHHHHHhhcccCccccHHH
No 91
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=49.38 E-value=14 Score=21.53 Aligned_cols=12 Identities=50% Similarity=0.708 Sum_probs=5.9
Q ss_pred CCcEEEcCCCCC
Q 007687 261 SLKVLNLSHAEL 272 (593)
Q Consensus 261 ~Lr~L~L~~~~l 272 (593)
+|++|+|++|.+
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 445555555544
No 92
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=30.22 E-value=2.7e+02 Score=31.13 Aligned_cols=48 Identities=8% Similarity=0.079 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHH-HHh-hccchhhhhhhHHHHHHHHHHHHHHHHHH
Q 007687 42 TELVKLIEAKNDVMARV-VNA-ERQPMMTRLNKVQGWLSRVDAVKAEADEL 90 (593)
Q Consensus 42 ~~~~~L~~~~~~i~~k~-~~a-~~~~~l~~~~~~~~W~~~l~~l~~~~~~i 90 (593)
...++|....+.+.++- .+. +.. .|+...-.+-|..+..++..++..+
T Consensus 235 ~a~e~L~~r~~~L~~k~~~L~~e~~-~LK~ELiedRW~~vFr~l~~q~~~m 284 (683)
T PF08580_consen 235 SACEELEDRYERLEKKWKKLEKEAE-SLKKELIEDRWNIVFRNLGRQAQKM 284 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 34456666677777666 222 223 6777778889999988776655443
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=25.49 E-value=45 Score=35.30 Aligned_cols=63 Identities=24% Similarity=0.409 Sum_probs=29.1
Q ss_pred ccCCcccEEEccCccCcccch--hhhccCCCCcEEEcCCC--CCCcCCcccCC--CCCCcEeeCCCCcCc
Q 007687 233 ATCRHLLTLFLNQNKLQMIHN--DFFRFMPSLKVLNLSHA--ELTELPVGISD--LVSLQHLDLSESDIS 296 (593)
Q Consensus 233 ~~~~~Lr~L~l~~~~l~~~~~--~~~~~l~~Lr~L~L~~~--~l~~lp~~i~~--L~~L~~L~L~~~~i~ 296 (593)
.+.+.+..+.+++|++..+.. ..-...++|..|+|++| .+...+ ++.+ ...|+.|-+.||.+.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCccc
Confidence 344455555555555332221 11234556666666666 333222 2222 234566666666443
No 94
>PF02083 Urotensin_II: Urotensin II; InterPro: IPR001483 Urotensin II, a small peptide that contains a disulphide bridge, was originally isolated from the caudal portion of the spinal cord of teleost and elasmobranch fish []. The peptide has also been found in the brain of frogs []. Urotensin II seems to be involved in smooth muscle stimulation.; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=21.81 E-value=31 Score=15.73 Aligned_cols=7 Identities=43% Similarity=1.184 Sum_probs=4.7
Q ss_pred hHhcccc
Q 007687 101 LCLGGYC 107 (593)
Q Consensus 101 ~Cf~~yc 107 (593)
.||.-||
T Consensus 5 ~CFWKYC 11 (12)
T PF02083_consen 5 ECFWKYC 11 (12)
T ss_pred chhhhhc
Confidence 4776676
No 95
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=21.66 E-value=5.2e+02 Score=22.69 Aligned_cols=55 Identities=13% Similarity=0.081 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHH
Q 007687 35 ENVIALETELVKLIEAKNDVMARVVNAERQPMMTRLNKVQGWLSRVDAVKAEADE 89 (593)
Q Consensus 35 ~~~~~l~~~~~~L~~~~~~i~~k~~~a~~~~~l~~~~~~~~W~~~l~~l~~~~~~ 89 (593)
+-++.|+.+++.|+..+.+|++.+..|...|=++.+-..+.=+.....++..+..
T Consensus 11 eg~~~L~~EL~~L~~~r~~i~~~i~~Ar~~GDlsENaey~aak~~q~~~e~RI~~ 65 (158)
T PRK05892 11 AARDHLEAELARLRARRDRLAVEVNDRGMIGDHGDQAEAIQRADELARLDDRINE 65 (158)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHH
Confidence 4456899999999988999999887776643565555444444443344444443
Done!