Query 007687
Match_columns 593
No_of_seqs 410 out of 4176
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 07:59:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007687.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007687hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fmz_A Internalin; leucine ric 99.9 9.1E-27 3.1E-31 236.2 19.6 303 211-568 41-344 (347)
2 4fmz_A Internalin; leucine ric 99.9 6E-26 2.1E-30 230.1 23.9 299 194-545 46-344 (347)
3 2id5_A Lingo-1, leucine rich r 99.9 7.2E-25 2.5E-29 232.2 26.2 172 195-383 14-189 (477)
4 1o6v_A Internalin A; bacterial 99.9 5.5E-25 1.9E-29 232.1 24.5 311 195-545 49-364 (466)
5 2z81_A CD282 antigen, TOLL-lik 99.9 2.1E-25 7.3E-30 240.6 21.5 147 197-344 10-161 (549)
6 2z7x_B TOLL-like receptor 1, v 99.9 4.3E-25 1.5E-29 236.6 23.2 356 194-568 2-479 (520)
7 3v47_A TOLL-like receptor 5B a 99.9 4.8E-25 1.6E-29 232.1 21.6 350 194-567 12-405 (455)
8 3vq2_A TLR4, TOLL-like recepto 99.9 8E-25 2.7E-29 239.1 23.5 147 195-344 14-166 (606)
9 4ecn_A Leucine-rich repeat pro 99.9 2.6E-25 8.7E-30 247.8 19.4 340 207-568 440-838 (876)
10 3t6q_A CD180 antigen; protein- 99.9 1.5E-24 5.2E-29 236.8 24.2 345 194-567 14-435 (606)
11 4eco_A Uncharacterized protein 99.9 1.7E-25 5.7E-30 244.8 16.2 319 212-568 247-598 (636)
12 3o6n_A APL1; leucine-rich repe 99.9 1.1E-24 3.6E-29 224.6 20.8 303 211-568 42-350 (390)
13 3t6q_A CD180 antigen; protein- 99.9 2.2E-24 7.4E-29 235.6 23.9 266 279-568 274-558 (606)
14 1o6v_A Internalin A; bacterial 99.9 2.2E-24 7.6E-29 227.5 23.2 302 213-568 45-364 (466)
15 3rgz_A Protein brassinosteroid 99.9 4.9E-25 1.7E-29 246.6 19.0 336 195-567 181-548 (768)
16 2z63_A TOLL-like receptor 4, v 99.9 1.7E-24 5.8E-29 234.7 22.5 144 196-342 11-160 (570)
17 3vq2_A TLR4, TOLL-like recepto 99.9 1.5E-24 5.1E-29 236.9 20.6 137 194-331 34-177 (606)
18 3oja_B Anopheles plasmodium-re 99.9 2.9E-24 9.9E-29 233.6 21.6 302 212-568 49-356 (597)
19 3o6n_A APL1; leucine-rich repe 99.9 4E-24 1.4E-28 220.3 20.7 297 194-545 47-350 (390)
20 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.2E-23 4.2E-28 227.3 25.3 358 194-568 33-508 (562)
21 4eco_A Uncharacterized protein 99.9 1.4E-24 4.6E-29 237.6 16.6 312 229-568 198-577 (636)
22 3rgz_A Protein brassinosteroid 99.9 6.6E-24 2.3E-28 237.5 20.6 267 195-487 250-551 (768)
23 3oja_B Anopheles plasmodium-re 99.9 9.2E-24 3.1E-28 229.6 19.9 285 233-568 48-335 (597)
24 2z7x_B TOLL-like receptor 1, v 99.9 1.8E-23 6.2E-28 223.9 21.7 123 217-344 3-128 (520)
25 2z63_A TOLL-like receptor 4, v 99.9 3E-23 1E-27 224.9 23.3 348 195-567 31-528 (570)
26 3bz5_A Internalin-J, INLJ; leu 99.9 1.5E-23 5.3E-28 219.5 20.1 118 214-342 42-159 (457)
27 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 7.9E-23 2.7E-27 220.9 24.3 328 214-567 31-483 (562)
28 1ziw_A TOLL-like receptor 3; i 99.9 9.3E-23 3.2E-27 225.8 25.2 148 195-344 7-158 (680)
29 3j0a_A TOLL-like receptor 5; m 99.9 1.3E-22 4.4E-27 229.4 26.6 341 194-565 6-409 (844)
30 4ecn_A Leucine-rich repeat pro 99.9 5.5E-23 1.9E-27 229.0 22.9 355 194-570 450-872 (876)
31 3v47_A TOLL-like receptor 5B a 99.9 4.5E-23 1.5E-27 217.0 21.0 336 194-551 32-412 (455)
32 2z81_A CD282 antigen, TOLL-lik 99.9 6.6E-23 2.3E-27 221.1 21.8 148 194-342 28-183 (549)
33 2ft3_A Biglycan; proteoglycan, 99.9 4.2E-23 1.4E-27 207.7 18.0 293 215-545 34-331 (332)
34 1xku_A Decorin; proteoglycan, 99.9 2.3E-22 7.7E-27 202.2 22.7 294 214-544 31-329 (330)
35 2id5_A Lingo-1, leucine rich r 99.9 1.5E-22 5.3E-27 214.2 21.4 289 194-521 34-331 (477)
36 3bz5_A Internalin-J, INLJ; leu 99.9 2.2E-22 7.7E-27 210.7 20.4 296 194-544 44-349 (457)
37 4fcg_A Uncharacterized protein 99.9 1E-22 3.4E-27 204.1 15.8 91 234-325 79-169 (328)
38 1ziw_A TOLL-like receptor 3; i 99.9 7.7E-22 2.6E-26 218.4 23.0 246 217-485 7-283 (680)
39 4g8a_A TOLL-like receptor 4; l 99.9 8.9E-22 3E-26 216.1 22.2 145 196-343 35-185 (635)
40 3j0a_A TOLL-like receptor 5; m 99.9 1.9E-21 6.4E-26 219.9 23.7 151 217-383 7-161 (844)
41 4fcg_A Uncharacterized protein 99.9 8.4E-22 2.9E-26 197.4 16.3 229 258-565 79-309 (328)
42 1ogq_A PGIP-2, polygalacturona 99.9 1.1E-21 3.6E-26 195.4 14.2 245 214-524 50-305 (313)
43 2z80_A TOLL-like receptor 2, v 99.9 2.1E-21 7.2E-26 197.0 15.9 121 219-341 36-159 (353)
44 2z80_A TOLL-like receptor 2, v 99.9 5.2E-21 1.8E-25 194.1 17.7 267 195-486 34-313 (353)
45 2ft3_A Biglycan; proteoglycan, 99.9 9.5E-21 3.2E-25 190.5 19.0 285 236-568 33-331 (332)
46 3zyj_A Leucine-rich repeat-con 99.9 1E-20 3.6E-25 197.8 19.9 239 196-486 47-291 (440)
47 3zyi_A Leucine-rich repeat-con 99.9 1E-20 3.6E-25 198.5 19.8 238 196-485 58-301 (452)
48 1jl5_A Outer protein YOPM; leu 99.9 9.5E-20 3.2E-24 190.6 26.4 213 194-432 73-288 (454)
49 1xku_A Decorin; proteoglycan, 99.9 6.5E-20 2.2E-24 184.2 23.7 283 195-520 34-329 (330)
50 4g8a_A TOLL-like receptor 4; l 99.9 4.7E-20 1.6E-24 202.3 24.4 352 194-566 54-576 (635)
51 1jl5_A Outer protein YOPM; leu 99.8 4.9E-20 1.7E-24 192.7 22.3 272 214-556 131-420 (454)
52 2z66_A Variable lymphocyte rec 99.8 1.4E-20 4.8E-25 187.0 16.9 241 218-520 11-258 (306)
53 3zyj_A Leucine-rich repeat-con 99.8 3.9E-20 1.3E-24 193.4 17.9 243 215-521 44-290 (440)
54 3zyi_A Leucine-rich repeat-con 99.8 4.9E-20 1.7E-24 193.4 17.9 242 216-521 56-301 (452)
55 3g06_A SSPH2 (leucine-rich rep 99.8 1.9E-19 6.4E-24 194.2 21.8 254 194-521 42-295 (622)
56 2z66_A Variable lymphocyte rec 99.8 3.8E-20 1.3E-24 183.8 15.2 240 196-486 11-260 (306)
57 3o53_A Protein LRIM1, AGAP0063 99.8 7.7E-21 2.6E-25 189.7 10.0 120 215-343 11-132 (317)
58 1ogq_A PGIP-2, polygalacturona 99.8 3.8E-20 1.3E-24 184.2 11.9 243 195-488 53-305 (313)
59 3g06_A SSPH2 (leucine-rich rep 99.8 1E-18 3.4E-23 188.5 22.6 257 214-546 40-296 (622)
60 1ozn_A Reticulon 4 receptor; N 99.8 5E-19 1.7E-23 173.8 18.0 220 217-487 14-238 (285)
61 1ozn_A Reticulon 4 receptor; N 99.8 2.3E-19 7.9E-24 176.2 13.2 218 195-462 14-236 (285)
62 3o53_A Protein LRIM1, AGAP0063 99.8 9.5E-20 3.3E-24 181.7 7.0 266 237-552 11-280 (317)
63 1wwl_A Monocyte differentiatio 99.8 1E-19 3.6E-24 181.0 6.3 242 214-484 43-306 (312)
64 3oja_A Leucine-rich immune mol 99.8 4.6E-19 1.6E-23 187.2 9.9 237 234-519 32-271 (487)
65 2xwt_C Thyrotropin receptor; s 99.8 4.2E-18 1.4E-22 162.5 15.7 135 204-341 23-166 (239)
66 3oja_A Leucine-rich immune mol 99.8 3.1E-18 1.1E-22 180.8 16.2 237 259-545 33-273 (487)
67 1h6u_A Internalin H; cell adhe 99.8 5.1E-18 1.7E-22 168.3 15.5 121 214-341 41-161 (308)
68 1p9a_G Platelet glycoprotein I 99.8 1.3E-17 4.4E-22 163.8 16.4 129 212-343 8-136 (290)
69 2z62_A TOLL-like receptor 4, v 99.8 1.9E-17 6.5E-22 161.7 17.4 143 197-342 12-160 (276)
70 2o6q_A Variable lymphocyte rec 99.7 2.9E-17 9.9E-22 159.8 17.4 127 215-343 17-145 (270)
71 2z62_A TOLL-like receptor 4, v 99.7 1.2E-17 4.2E-22 163.0 14.7 220 219-462 12-235 (276)
72 1h6u_A Internalin H; cell adhe 99.7 1.1E-17 3.8E-22 165.8 14.3 198 231-468 36-233 (308)
73 2o6q_A Variable lymphocyte rec 99.7 3.1E-17 1E-21 159.6 17.1 195 194-432 18-216 (270)
74 3ogk_B Coronatine-insensitive 99.7 6.4E-19 2.2E-23 191.7 5.5 198 213-428 163-385 (592)
75 1z7x_W Ribonuclease inhibitor; 99.7 6.9E-20 2.4E-24 193.0 -4.2 310 212-545 54-409 (461)
76 2xwt_C Thyrotropin receptor; s 99.7 4.5E-17 1.5E-21 155.4 12.9 112 225-341 22-140 (239)
77 4ay9_X Follicle-stimulating ho 99.7 9.9E-17 3.4E-21 162.2 15.7 237 197-485 14-257 (350)
78 3rfs_A Internalin B, repeat mo 99.7 3.8E-17 1.3E-21 159.0 12.2 152 212-381 39-192 (272)
79 3ogk_B Coronatine-insensitive 99.7 2.3E-17 7.8E-22 179.4 10.2 306 212-549 190-527 (592)
80 1z7x_W Ribonuclease inhibitor; 99.7 2.9E-18 9.9E-23 180.5 2.9 60 506-567 337-408 (461)
81 3rfs_A Internalin B, repeat mo 99.7 2E-16 6.9E-21 153.9 15.2 171 194-380 43-215 (272)
82 1p9a_G Platelet glycoprotein I 99.7 2.2E-16 7.4E-21 155.0 15.5 170 195-383 13-185 (290)
83 2ast_B S-phase kinase-associat 99.7 3.1E-17 1.1E-21 165.0 9.5 223 238-520 49-282 (336)
84 2ast_B S-phase kinase-associat 99.7 7.4E-18 2.5E-22 169.6 4.8 223 215-484 48-282 (336)
85 4ay9_X Follicle-stimulating ho 99.7 2.6E-16 9E-21 159.0 15.3 238 239-543 12-255 (350)
86 3m19_A Variable lymphocyte rec 99.7 6.1E-16 2.1E-20 148.6 15.8 171 195-382 17-191 (251)
87 2p1m_B Transport inhibitor res 99.7 6.6E-18 2.3E-22 183.8 1.9 101 214-314 130-243 (594)
88 1wwl_A Monocyte differentiatio 99.7 2.8E-16 9.5E-21 156.2 11.7 129 213-343 94-240 (312)
89 3m19_A Variable lymphocyte rec 99.6 1.2E-15 4.1E-20 146.6 14.5 175 215-433 15-191 (251)
90 1h6t_A Internalin B; cell adhe 99.6 6.2E-16 2.1E-20 151.9 12.6 146 212-381 44-189 (291)
91 2ca6_A RAN GTPase-activating p 99.6 3E-17 1E-21 168.5 2.8 135 233-383 29-200 (386)
92 4ezg_A Putative uncharacterize 99.6 1.6E-15 5.4E-20 139.9 12.8 150 212-382 42-193 (197)
93 3e6j_A Variable lymphocyte rec 99.6 2.6E-15 8.8E-20 142.0 14.4 147 196-344 23-172 (229)
94 1h6t_A Internalin B; cell adhe 99.6 4.8E-15 1.6E-19 145.5 16.4 166 194-383 48-213 (291)
95 1m9s_A Internalin B; cell inva 99.6 5.6E-16 1.9E-20 166.9 10.4 113 223-342 30-142 (605)
96 4glp_A Monocyte differentiatio 99.6 1.5E-15 5E-20 150.8 10.7 222 235-484 63-304 (310)
97 2a5y_B CED-4; apoptosis; HET: 99.6 2.5E-16 8.7E-21 168.5 5.1 147 14-190 293-472 (549)
98 2ca6_A RAN GTPase-activating p 99.6 1.6E-16 5.5E-21 163.0 3.3 245 243-520 16-313 (386)
99 2v9t_B SLIT homolog 2 protein 99.6 6.7E-15 2.3E-19 138.1 13.9 147 195-343 14-164 (220)
100 2p1m_B Transport inhibitor res 99.6 4.4E-17 1.5E-21 177.3 -2.5 99 212-311 154-270 (594)
101 1xeu_A Internalin C; cellular 99.6 5.7E-15 2E-19 142.6 12.5 157 203-384 30-186 (263)
102 1m9s_A Internalin B; cell inva 99.6 4.5E-15 1.5E-19 159.8 12.2 168 211-406 40-207 (605)
103 4ezg_A Putative uncharacterize 99.6 8.4E-15 2.9E-19 135.0 11.9 146 194-343 46-193 (197)
104 2v70_A SLIT-2, SLIT homolog 2 99.6 1.4E-14 4.7E-19 136.0 13.5 146 196-343 15-165 (220)
105 4glp_A Monocyte differentiatio 99.6 4.1E-15 1.4E-19 147.6 9.8 128 215-343 92-236 (310)
106 2o6s_A Variable lymphocyte rec 99.6 3E-14 1E-18 132.5 14.4 146 196-343 11-160 (208)
107 2v9t_B SLIT homolog 2 protein 99.6 1.7E-14 5.9E-19 135.3 12.4 149 217-382 14-164 (220)
108 3goz_A Leucine-rich repeat-con 99.6 4.7E-15 1.6E-19 150.6 8.6 259 219-521 3-295 (362)
109 1xeu_A Internalin C; cellular 99.5 7E-15 2.4E-19 142.0 7.9 167 213-433 18-184 (263)
110 2o6s_A Variable lymphocyte rec 99.5 2.5E-14 8.6E-19 133.1 11.2 146 217-379 10-157 (208)
111 2v70_A SLIT-2, SLIT homolog 2 99.5 4.4E-14 1.5E-18 132.5 12.8 150 217-383 14-166 (220)
112 2xot_A Amphoterin-induced prot 99.5 2.6E-14 8.9E-19 145.0 11.8 148 195-344 21-176 (361)
113 3e6j_A Variable lymphocyte rec 99.5 6.9E-14 2.4E-18 132.1 12.8 149 216-382 21-171 (229)
114 1a9n_A U2A', U2A'; complex (nu 99.5 2.3E-14 7.9E-19 129.5 7.5 130 211-343 16-152 (176)
115 2je0_A Acidic leucine-rich nuc 99.5 3E-14 1E-18 124.9 7.8 123 214-339 17-148 (149)
116 2ell_A Acidic leucine-rich nuc 99.5 3.8E-14 1.3E-18 127.0 8.7 128 214-344 24-160 (168)
117 3goz_A Leucine-rich repeat-con 99.5 3.6E-14 1.2E-18 144.1 8.7 157 214-383 22-209 (362)
118 3cvr_A Invasion plasmid antige 99.5 2E-13 6.7E-18 145.5 14.8 112 215-342 60-171 (571)
119 2wfh_A SLIT homolog 2 protein 99.4 8.5E-13 2.9E-17 120.9 12.6 125 217-344 13-139 (193)
120 2ell_A Acidic leucine-rich nuc 99.4 1.4E-12 4.7E-17 116.7 13.3 131 194-325 26-165 (168)
121 2xot_A Amphoterin-induced prot 99.4 4.7E-13 1.6E-17 135.6 11.3 149 195-344 42-202 (361)
122 2o6r_A Variable lymphocyte rec 99.4 1.2E-12 4.2E-17 118.1 12.5 127 216-344 9-137 (177)
123 1w8a_A SLIT protein; signaling 99.4 7.9E-13 2.7E-17 121.1 11.2 126 217-344 11-139 (192)
124 3cvr_A Invasion plasmid antige 99.4 1.6E-12 5.3E-17 138.5 14.8 133 194-344 61-193 (571)
125 2je0_A Acidic leucine-rich nuc 99.4 4.9E-13 1.7E-17 117.0 8.1 108 233-344 14-126 (149)
126 1a9n_A U2A', U2A'; complex (nu 99.4 7.6E-13 2.6E-17 119.4 8.7 124 194-317 21-151 (176)
127 1dce_A Protein (RAB geranylger 99.4 1.6E-12 5.6E-17 139.0 11.4 127 213-344 408-546 (567)
128 2wfh_A SLIT homolog 2 protein 99.4 4.4E-12 1.5E-16 116.1 12.0 122 195-317 13-137 (193)
129 4b8c_D Glucose-repressible alc 99.3 9.4E-13 3.2E-17 145.4 7.9 151 214-383 173-329 (727)
130 4b8c_D Glucose-repressible alc 99.3 1.8E-12 6.2E-17 143.1 9.4 108 233-343 221-328 (727)
131 1w8a_A SLIT protein; signaling 99.3 7.2E-12 2.5E-16 114.6 11.7 123 195-318 11-138 (192)
132 2o6r_A Variable lymphocyte rec 99.3 1.1E-11 3.9E-16 111.7 11.7 125 196-321 11-139 (177)
133 1dce_A Protein (RAB geranylger 99.3 9.2E-12 3.1E-16 133.2 11.0 152 233-402 406-566 (567)
134 1ds9_A Outer arm dynein; leuci 99.3 2.9E-13 9.8E-18 124.8 -1.8 125 215-343 24-152 (198)
135 2r9u_A Variable lymphocyte rec 99.2 2.1E-11 7.2E-16 109.5 9.1 99 217-316 15-115 (174)
136 1ds9_A Outer arm dynein; leuci 99.2 1.1E-12 3.6E-17 120.9 0.0 128 237-383 24-153 (198)
137 2r9u_A Variable lymphocyte rec 99.2 5.2E-11 1.8E-15 106.9 10.1 103 238-344 14-118 (174)
138 3g39_A Variable lymphocyte rec 99.2 5.4E-11 1.9E-15 106.4 9.8 101 239-343 12-114 (170)
139 3g39_A Variable lymphocyte rec 99.2 8.7E-11 3E-15 105.0 9.7 101 216-317 11-113 (170)
140 3sb4_A Hypothetical leucine ri 99.2 2.6E-10 8.9E-15 113.8 14.0 283 213-540 24-327 (329)
141 3sb4_A Hypothetical leucine ri 99.1 5.3E-10 1.8E-14 111.5 11.7 285 234-562 23-326 (329)
142 3sfz_A APAF-1, apoptotic pepti 98.9 4.2E-10 1.5E-14 132.9 6.0 140 15-189 287-452 (1249)
143 4fdw_A Leucine rich hypothetic 98.9 7.1E-08 2.4E-12 98.4 20.7 98 237-339 136-234 (401)
144 4fdw_A Leucine rich hypothetic 98.9 8.3E-08 2.8E-12 98.0 19.6 215 215-484 136-355 (401)
145 1vt4_I APAF-1 related killer D 98.9 3.8E-10 1.3E-14 123.9 1.6 133 15-182 299-436 (1221)
146 2ifg_A High affinity nerve gro 98.9 4.1E-09 1.4E-13 105.9 9.0 97 220-316 14-113 (347)
147 2ifg_A High affinity nerve gro 98.9 5.9E-09 2E-13 104.8 9.7 102 239-344 11-116 (347)
148 3un9_A NLR family member X1; l 98.6 2.1E-08 7.1E-13 101.4 3.8 128 214-343 101-251 (372)
149 4fs7_A Uncharacterized protein 98.5 3.2E-06 1.1E-10 86.2 18.7 38 301-340 157-194 (394)
150 3un9_A NLR family member X1; l 98.5 2.4E-08 8.2E-13 100.9 2.3 128 214-343 72-223 (372)
151 1z6t_A APAF-1, apoptotic prote 98.5 1E-07 3.5E-12 103.0 7.0 138 14-186 286-449 (591)
152 4fs7_A Uncharacterized protein 98.2 3E-05 1E-09 79.0 16.7 280 209-541 66-373 (394)
153 3e4g_A ATP synthase subunit S, 98.2 4.7E-07 1.6E-11 79.7 2.0 18 508-525 137-154 (176)
154 4gt6_A Cell surface protein; l 98.0 0.00031 1.1E-08 71.4 20.4 100 237-340 65-169 (394)
155 2ra8_A Uncharacterized protein 98.0 5.8E-06 2E-10 82.7 7.0 54 214-268 172-227 (362)
156 3rw6_A Nuclear RNA export fact 98.0 2.3E-06 7.7E-11 81.3 2.7 82 257-339 167-259 (267)
157 2ra8_A Uncharacterized protein 98.0 1.6E-05 5.3E-10 79.6 8.7 80 233-314 136-227 (362)
158 1io0_A Tropomodulin; LRR prote 97.9 7.1E-06 2.4E-10 73.9 5.0 107 233-342 33-162 (185)
159 1io0_A Tropomodulin; LRR prote 97.9 9.9E-06 3.4E-10 72.9 5.2 104 213-316 35-161 (185)
160 3rw6_A Nuclear RNA export fact 97.9 2E-05 6.8E-10 74.8 6.8 94 219-313 148-258 (267)
161 4gt6_A Cell surface protein; l 97.8 0.00092 3.1E-08 67.9 19.1 272 215-519 65-366 (394)
162 3e4g_A ATP synthase subunit S, 97.8 2.4E-05 8.3E-10 68.8 5.7 40 422-466 115-154 (176)
163 4h09_A Hypothetical leucine ri 97.5 0.006 2.1E-07 61.4 20.2 119 214-340 46-167 (379)
164 4h09_A Hypothetical leucine ri 96.6 0.0066 2.3E-07 61.1 9.9 102 233-338 237-340 (379)
165 3rfe_A Platelet glycoprotein I 95.8 0.014 4.8E-07 48.5 5.8 33 261-293 32-65 (130)
166 3rfe_A Platelet glycoprotein I 95.3 0.024 8.4E-07 47.0 5.7 55 218-273 12-68 (130)
167 1pgv_A TMD-1, tropomodulin TMD 93.8 0.081 2.8E-06 47.2 5.7 39 258-296 68-111 (197)
168 1pgv_A TMD-1, tropomodulin TMD 92.3 0.11 3.9E-06 46.2 4.3 82 258-341 39-136 (197)
169 3twe_A Alpha4H; unknown functi 58.6 19 0.00064 19.1 3.8 23 36-58 2-24 (27)
170 3vkg_A Dynein heavy chain, cyt 38.5 1.1E+02 0.0038 39.0 10.6 63 47-116 2061-2125(3245)
171 2lz0_A Uncharacterized protein 37.5 32 0.0011 26.4 3.8 45 247-292 7-52 (100)
172 2lz0_A Uncharacterized protein 27.9 46 0.0016 25.4 3.3 37 233-270 17-53 (100)
173 2akf_A Coronin-1A; coiled coil 22.1 1.1E+02 0.0039 17.1 3.4 19 40-58 4-22 (32)
No 1
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=9.1e-27 Score=236.17 Aligned_cols=303 Identities=18% Similarity=0.206 Sum_probs=209.3
Q ss_pred CCCcceeEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCcccCCCCCCcEeeC
Q 007687 211 KGWENVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISDLVSLQHLDL 290 (593)
Q Consensus 211 ~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L 290 (593)
..++++++|++.++.+..++....+++|++|++++|.++.++. +..+++|++|++++|.++.+| .++.+++|++|++
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l 117 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYL 117 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEEC
T ss_pred hhcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEEC
Confidence 3456788888888888888777778888888888888887776 778888888888888888775 5888888888888
Q ss_pred CCCcCcccchhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccchhhhcCCC
Q 007687 291 SESDISELPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELLGLK 370 (593)
Q Consensus 291 ~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ 370 (593)
++|.++.+|. +..+++|++|++++|.....++. +..+++|++|++.++... ....+..++
T Consensus 118 ~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~-----------------~~~~~~~l~ 177 (347)
T 4fmz_A 118 NEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVK-----------------DVTPIANLT 177 (347)
T ss_dssp TTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCC-----------------CCGGGGGCT
T ss_pred cCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcC-----------------CchhhccCC
Confidence 8888887776 77888888888888866666655 788888888888877653 122266777
Q ss_pred CCceEEEEecCccchhhhhhcccccccceEEEecccCCCceeeeccccccccccceeeccccccceeeeccCCcccccCC
Q 007687 371 YLEVISFTLRSSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIAECKKLEELKMDYTGEVQQFVF 450 (593)
Q Consensus 371 ~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~l 450 (593)
+|+.|+++.+....++. .....+|+.|+++++.-.. .. .+..+++|++|++++|.... +. . . ..+
T Consensus 178 ~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~-~~--~~~~~~~L~~L~l~~n~l~~-~~-~-~-----~~l 242 (347)
T 4fmz_A 178 DLYSLSLNYNQIEDISP----LASLTSLHYFTAYVNQITD-IT--PVANMTRLNSLKIGNNKITD-LS-P-L-----ANL 242 (347)
T ss_dssp TCSEEECTTSCCCCCGG----GGGCTTCCEEECCSSCCCC-CG--GGGGCTTCCEEECCSSCCCC-CG-G-G-----TTC
T ss_pred CCCEEEccCCccccccc----ccCCCccceeecccCCCCC-Cc--hhhcCCcCCEEEccCCccCC-Cc-c-h-----hcC
Confidence 78888877665555443 2234577788877764322 21 26677788888888775433 21 1 2 237
Q ss_pred CCccEEEEeCCCCCCCCcccccCCCCCEEeeccCccchhhcccCcccccccccCCCCCCcccceecccccccCcccCCCC
Q 007687 451 HSLKKVEIVNSYKLKDLTFLVFAPNLESIEVLGCVAMEEMVSVGKFAAVPEVTANLNPFAKLQYLDLVGAINLKSIYWMP 530 (593)
Q Consensus 451 ~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~ 530 (593)
++|+.|++++| .++.++.+..+++|++|++++|.. ..+. .+..+++|+.|++++|.--...+...
T Consensus 243 ~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~l-~~~~-------------~~~~l~~L~~L~L~~n~l~~~~~~~l 307 (347)
T 4fmz_A 243 SQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSNQI-SDIS-------------VLNNLSQLNSLFLNNNQLGNEDMEVI 307 (347)
T ss_dssp TTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCC-CCCG-------------GGGGCTTCSEEECCSSCCCGGGHHHH
T ss_pred CCCCEEECCCC-ccCCChhHhcCCCcCEEEccCCcc-CCCh-------------hhcCCCCCCEEECcCCcCCCcChhHh
Confidence 78888888887 677777777888888888887732 2221 34567788888888764322222223
Q ss_pred CCCCccceeeeccCcCCCCCCCCCCcc-cccceEEeccc
Q 007687 531 LSFPLLKYLRAMNCHKLKKLPFDSNSA-RERNIVISGYT 568 (593)
Q Consensus 531 ~~~~~L~~L~i~~C~~L~~lP~~~~~~-~l~~l~I~~~~ 568 (593)
..+++|++|++++|+ ++.+|. .... +|+.+.+.+++
T Consensus 308 ~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 308 GGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp HTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred hccccCCEEEccCCc-cccccC-hhhhhccceeehhhhc
Confidence 457888888888875 555544 3333 56777666553
No 2
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=6e-26 Score=230.09 Aligned_cols=299 Identities=19% Similarity=0.201 Sum_probs=244.9
Q ss_pred CcEEEEcCCcceecCCCCCCcceeEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCC
Q 007687 194 ENFLVYAGVGLTEAPEVKGWENVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELT 273 (593)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~ 273 (593)
-..+.+.+..+..++.+..++++++|++++|.+..++....+++|++|++++|.++.++. +..+++|++|++++|.+.
T Consensus 46 L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~l~~n~i~ 123 (347)
T 4fmz_A 46 ITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNIS 123 (347)
T ss_dssp CSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECTTSCCC
T ss_pred ccEEEEeCCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchH--HcCCCcCCEEECcCCccc
Confidence 456778888888888888899999999999999999888999999999999999998864 899999999999999999
Q ss_pred cCCcccCCCCCCcEeeCCCCcCcccchhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccc
Q 007687 274 ELPVGISDLVSLQHLDLSESDISELPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDS 353 (593)
Q Consensus 274 ~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~ 353 (593)
.+|. +..+++|++|++++|.....+..+..+++|++|++++| .+..++. ++.+++|++|++.++...
T Consensus 124 ~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~--~~~l~~L~~L~l~~n~l~--------- 190 (347)
T 4fmz_A 124 DISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNYNQIE--------- 190 (347)
T ss_dssp CCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECTTSCCC---------
T ss_pred Cchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCC-CcCCchh--hccCCCCCEEEccCCccc---------
Confidence 9876 99999999999999954444445999999999999999 6777776 889999999999988764
Q ss_pred cccCCcccchhhhcCCCCCceEEEEecCccchhhhhhcccccccceEEEecccCCCceeeeccccccccccceeeccccc
Q 007687 354 ILFGGGALIVEELLGLKYLEVISFTLRSSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIAECKK 433 (593)
Q Consensus 354 ~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 433 (593)
.+..+..+++|+.|.++.+....... ....++|+.|+++++.- ...+ .+..+++|++|++++|..
T Consensus 191 --------~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~l-~~~~--~~~~l~~L~~L~l~~n~l 255 (347)
T 4fmz_A 191 --------DISPLASLTSLHYFTAYVNQITDITP----VANMTRLNSLKIGNNKI-TDLS--PLANLSQLTWLEIGTNQI 255 (347)
T ss_dssp --------CCGGGGGCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCC-CCCG--GGTTCTTCCEEECCSSCC
T ss_pred --------ccccccCCCccceeecccCCCCCCch----hhcCCcCCEEEccCCcc-CCCc--chhcCCCCCEEECCCCcc
Confidence 22337788999999998776665544 23456899999999853 2332 278889999999999864
Q ss_pred cceeeeccCCcccccCCCCccEEEEeCCCCCCCCcccccCCCCCEEeeccCccchhhcccCcccccccccCCCCCCcccc
Q 007687 434 LEELKMDYTGEVQQFVFHSLKKVEIVNSYKLKDLTFLVFAPNLESIEVLGCVAMEEMVSVGKFAAVPEVTANLNPFAKLQ 513 (593)
Q Consensus 434 ~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~ 513 (593)
.. + + ... .+++|+.|++++| .++.++.+..+++|++|++++|......+. .+..+++|+
T Consensus 256 ~~-~-~-~~~-----~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~------------~l~~l~~L~ 314 (347)
T 4fmz_A 256 SD-I-N-AVK-----DLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQLGNEDME------------VIGGLTNLT 314 (347)
T ss_dssp CC-C-G-GGT-----TCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCGGGHH------------HHHTCTTCS
T ss_pred CC-C-h-hHh-----cCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCcCCCcChh------------HhhccccCC
Confidence 43 2 2 222 4899999999999 788888899999999999999965443322 456789999
Q ss_pred eecccccccCcccCCCCCCCCccceeeeccCc
Q 007687 514 YLDLVGAINLKSIYWMPLSFPLLKYLRAMNCH 545 (593)
Q Consensus 514 ~L~l~~c~~L~~l~~~~~~~~~L~~L~i~~C~ 545 (593)
+|++++|+ +..++. ...+++|++|++.+|+
T Consensus 315 ~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 315 TLFLSQNH-ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp EEECCSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred EEEccCCc-cccccC-hhhhhccceeehhhhc
Confidence 99999975 666554 5678999999999985
No 3
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=7.2e-25 Score=232.17 Aligned_cols=172 Identities=26% Similarity=0.307 Sum_probs=126.8
Q ss_pred cEEEEcCCcceecCCCCCCcceeEEEeeccCcccccc--cccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCC
Q 007687 195 NFLVYAGVGLTEAPEVKGWENVRRISLMDNQITNLSE--VATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAEL 272 (593)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l 272 (593)
..+.+.+..+..+|... .+++++|++++|.+..++. +..+++|++|++++|.++.+++..|.++++|++|+|++|.+
T Consensus 14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 92 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92 (477)
T ss_dssp TEEECCSCCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEeCCCCcCcCCCCC-CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence 34566666777777532 3678888888888888754 37788888888888888887666688888888888888888
Q ss_pred CcCCc-ccCCCCCCcEeeCCCCcCccc-chhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCC
Q 007687 273 TELPV-GISDLVSLQHLDLSESDISEL-PGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGAS 350 (593)
Q Consensus 273 ~~lp~-~i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~ 350 (593)
+.+|. .++++++|++|++++|.++.+ |..+..+++|++|++++| .+..++...++++++|++|++.++...
T Consensus 93 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~------ 165 (477)
T 2id5_A 93 KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKCNLT------ 165 (477)
T ss_dssp CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESCCCS------
T ss_pred CccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC-ccceeChhhccCCCCCCEEECCCCcCc------
Confidence 88865 468888888888888888765 456788888888888888 555555545888888888888877652
Q ss_pred ccccccCCcccchhhhcCCCCCceEEEEecCcc
Q 007687 351 EDSILFGGGALIVEELLGLKYLEVISFTLRSSH 383 (593)
Q Consensus 351 ~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~ 383 (593)
......+..+++|+.|.+..+...
T Consensus 166 ---------~~~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 166 ---------SIPTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp ---------SCCHHHHTTCTTCCEEEEESCCCC
T ss_pred ---------ccChhHhcccCCCcEEeCCCCcCc
Confidence 223345677777777777755443
No 4
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=5.5e-25 Score=232.10 Aligned_cols=311 Identities=18% Similarity=0.242 Sum_probs=184.4
Q ss_pred cEEEEcCCcceecCCCCCCcceeEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCc
Q 007687 195 NFLVYAGVGLTEAPEVKGWENVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTE 274 (593)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~ 274 (593)
..+.+.+..+..+|.+..++++++|++++|.+..++....+++|++|++++|.++.+++ +.++++|++|++++|.++.
T Consensus 49 ~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~ 126 (466)
T 1o6v_A 49 TTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD 126 (466)
T ss_dssp CEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred cEEecCCCCCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCC
Confidence 45666777777788777788899999999988888878888899999999998888877 7889999999999998888
Q ss_pred CCcccCCCCCCcEeeCCCCcCcccchhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCC-----C
Q 007687 275 LPVGISDLVSLQHLDLSESDISELPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDG-----A 349 (593)
Q Consensus 275 lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~-----~ 349 (593)
+|. ++++++|++|++++|.++.+|. ++.+++|++|+++++ +..++. ++++++|++|++.++....... .
T Consensus 127 ~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~~--~~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~ 200 (466)
T 1o6v_A 127 IDP-LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQ--VTDLKP--LANLTTLERLDISSNKVSDISVLAKLTN 200 (466)
T ss_dssp CGG-GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEES--CCCCGG--GTTCTTCCEEECCSSCCCCCGGGGGCTT
T ss_pred ChH-HcCCCCCCEEECCCCccCCChh-hccCCcccEeecCCc--ccCchh--hccCCCCCEEECcCCcCCCChhhccCCC
Confidence 865 8888999999999888887764 677777777777532 444444 6677777777777665431110 0
Q ss_pred CccccccCCcccchhhhcCCCCCceEEEEecCccchhhhhhcccccccceEEEecccCCCceeeeccccccccccceeec
Q 007687 350 SEDSILFGGGALIVEELLGLKYLEVISFTLRSSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIA 429 (593)
Q Consensus 350 ~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 429 (593)
++.-.+....-.....++.+++|+.|+++.+....++.+ ...++|+.|+++++.-... ..+..+++|++|+++
T Consensus 201 L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l----~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~l~ 273 (466)
T 1o6v_A 201 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTL----ASLTNLTDLDLANNQISNL---APLSGLTKLTELKLG 273 (466)
T ss_dssp CSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGG----GGCTTCSEEECCSSCCCCC---GGGTTCTTCSEEECC
T ss_pred CCEEEecCCcccccccccccCCCCEEECCCCCcccchhh----hcCCCCCEEECCCCccccc---hhhhcCCCCCEEECC
Confidence 000000000000111134445555555554443333211 1223555555555432111 114455556666665
Q ss_pred cccccceeeeccCCcccccCCCCccEEEEeCCCCCCCCcccccCCCCCEEeeccCccchhhcccCcccccccccCCCCCC
Q 007687 430 ECKKLEELKMDYTGEVQQFVFHSLKKVEIVNSYKLKDLTFLVFAPNLESIEVLGCVAMEEMVSVGKFAAVPEVTANLNPF 509 (593)
Q Consensus 430 ~~~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~ 509 (593)
+|.... +.+ + ..+++|+.|++++| .++.++.++.+++|++|++++|... .+. .+..+
T Consensus 274 ~n~l~~-~~~-~------~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L~~n~l~-~~~-------------~~~~l 330 (466)
T 1o6v_A 274 ANQISN-ISP-L------AGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFNNIS-DIS-------------PVSSL 330 (466)
T ss_dssp SSCCCC-CGG-G------TTCTTCSEEECCSS-CCSCCGGGGGCTTCSEEECCSSCCS-CCG-------------GGGGC
T ss_pred CCccCc-ccc-c------cCCCccCeEEcCCC-cccCchhhcCCCCCCEEECcCCcCC-Cch-------------hhccC
Confidence 554322 111 1 12566666666666 4555555666666666666666322 111 12345
Q ss_pred cccceecccccccCcccCCCCCCCCccceeeeccCc
Q 007687 510 AKLQYLDLVGAINLKSIYWMPLSFPLLKYLRAMNCH 545 (593)
Q Consensus 510 ~~L~~L~l~~c~~L~~l~~~~~~~~~L~~L~i~~C~ 545 (593)
++|+.|++++| .+..++ ....+++|+.|++++|.
T Consensus 331 ~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 331 TKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQ 364 (466)
T ss_dssp TTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSC
T ss_pred ccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCc
Confidence 66666666654 344432 23345666666666553
No 5
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.93 E-value=2.1e-25 Score=240.65 Aligned_cols=147 Identities=24% Similarity=0.304 Sum_probs=124.3
Q ss_pred EEEcCCcceecCCCCCCcceeEEEeeccCcccccc--cccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCc
Q 007687 197 LVYAGVGLTEAPEVKGWENVRRISLMDNQITNLSE--VATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTE 274 (593)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~ 274 (593)
+...+..++.+|... .+++++|++++|.+..++. +..+++|++|++++|.++.+++..|.++++|++|+|++|.++.
T Consensus 10 c~~~~~~l~~ip~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~ 88 (549)
T 2z81_A 10 CDGRSRSFTSIPSGL-TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS 88 (549)
T ss_dssp EECTTSCCSSCCSCC-CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS
T ss_pred EECCCCccccccccC-CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc
Confidence 455566778888633 3789999999999988754 3889999999999999999887779999999999999999998
Q ss_pred CCcc-cCCCCCCcEeeCCCCcCcc--cchhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCC
Q 007687 275 LPVG-ISDLVSLQHLDLSESDISE--LPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHN 344 (593)
Q Consensus 275 lp~~-i~~L~~L~~L~L~~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 344 (593)
+|.. ++++++|++|++++|.++. .|..++++++|++|++++|..++.+|...++++++|++|++.++...
T Consensus 89 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 89 LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred cCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence 8664 9999999999999999884 46778999999999999996577887655899999999999988764
No 6
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=4.3e-25 Score=236.59 Aligned_cols=356 Identities=17% Similarity=0.181 Sum_probs=223.1
Q ss_pred CcEEEEcCCcceecCCCCCCcceeEEEeeccCcccccc--cccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCC
Q 007687 194 ENFLVYAGVGLTEAPEVKGWENVRRISLMDNQITNLSE--VATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAE 271 (593)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~ 271 (593)
++.+.+.++.++.+|.... +++++|++++|.+..++. +..+++|++|++++|.++.+++..|.++++|++|+|++|.
T Consensus 2 ~~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 2 EFLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CCEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred cceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 3567888888888886444 899999999999998864 4889999999999999999977779999999999999999
Q ss_pred CCcCCcccCCCCCCcEeeCCCCcCcc--cchhhhccccCceeeccccccccccchhhcCCCccC--ceeeccCCCC--C-
Q 007687 272 LTELPVGISDLVSLQHLDLSESDISE--LPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRL--HVLRMFGASH--N- 344 (593)
Q Consensus 272 l~~lp~~i~~L~~L~~L~L~~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L--~~L~l~~~~~--~- 344 (593)
++.+|.. .+++|++|++++|.++. +|..++++++|++|++++| .+.. . .++.+++| ++|++.++.. .
T Consensus 81 l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n-~l~~--~-~~~~l~~L~L~~L~l~~n~l~~~~ 154 (520)
T 2z7x_B 81 LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT-HLEK--S-SVLPIAHLNISKVLLVLGETYGEK 154 (520)
T ss_dssp CCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEES-SCCG--G-GGGGGTTSCEEEEEEEECTTTTSS
T ss_pred eeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCc-ccch--h-hccccccceeeEEEeecccccccc
Confidence 9999877 89999999999999986 5789999999999999998 4443 2 26677777 8888887765 1
Q ss_pred CCCCCCcc---------------------------ccccCC--cc-----------cchhhhcC----------------
Q 007687 345 AFDGASED---------------------------SILFGG--GA-----------LIVEELLG---------------- 368 (593)
Q Consensus 345 ~~~~~~~~---------------------------~~~~~~--~~-----------~~~~~L~~---------------- 368 (593)
..++.+.. ..+..- .. ..+..++.
T Consensus 155 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 234 (520)
T 2z7x_B 155 EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTW 234 (520)
T ss_dssp CCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEH
T ss_pred cccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCH
Confidence 01111000 000000 00 00000000
Q ss_pred -----------CCCCceEEEEecCcc-chhhhhhc--cccc--------------------------ccceEEEecccCC
Q 007687 369 -----------LKYLEVISFTLRSSH-GLQSVLSS--HKLR--------------------------CCTRALLLQCFND 408 (593)
Q Consensus 369 -----------l~~L~~L~i~~~~~~-~~~~~~~~--~~~~--------------------------~~L~~L~l~~~~~ 408 (593)
.++|+.|+++.+... .++..... .... ..|+.|+++++.-
T Consensus 235 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l 314 (520)
T 2z7x_B 235 NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRM 314 (520)
T ss_dssp HHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCC
T ss_pred HHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcc
Confidence 125666666654332 11111100 0001 1344444444421
Q ss_pred CceeeeccccccccccceeeccccccceeeeccCCcccccCCCCccEEEEeCCCCCCCCc----ccccCCCCCEEeeccC
Q 007687 409 STSLEVSALADLKQLNRLRIAECKKLEELKMDYTGEVQQFVFHSLKKVEIVNSYKLKDLT----FLVFAPNLESIEVLGC 484 (593)
Q Consensus 409 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~----~l~~l~~L~~L~l~~c 484 (593)
. ... ....+++|++|++++|..... .+.+.. .+++|+.|++++| .++.++ .++.+++|++|++++|
T Consensus 315 ~-~~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~-----~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N 384 (520)
T 2z7x_B 315 V-HML--CPSKISPFLHLDFSNNLLTDT-VFENCG-----HLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQN 384 (520)
T ss_dssp C-CCC--CCSSCCCCCEEECCSSCCCTT-TTTTCC-----CCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSS
T ss_pred c-ccc--chhhCCcccEEEeECCccChh-hhhhhc-----cCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCC
Confidence 1 111 114556666666666653331 222322 2566666666666 444432 1556666666666666
Q ss_pred ccchhhccc--Cccccccccc--------CCCCCC-cccceecccccccCcccCCCCCCCCccceeeeccCcCCCCCCCC
Q 007687 485 VAMEEMVSV--GKFAAVPEVT--------ANLNPF-AKLQYLDLVGAINLKSIYWMPLSFPLLKYLRAMNCHKLKKLPFD 553 (593)
Q Consensus 485 ~~l~~~~~~--~~~~~~~~~~--------~~~~~~-~~L~~L~l~~c~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lP~~ 553 (593)
.....++.. .....+..+. .....+ ++|+.|+++++ .++.+|.....+++|++|++++| +++.+|..
T Consensus 385 ~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~ 462 (520)
T 2z7x_B 385 SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDG 462 (520)
T ss_dssp CCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTT
T ss_pred cCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHH
Confidence 443323221 0001111000 001122 68999999986 67788877778999999999998 78899986
Q ss_pred -CCcc-cccceEEeccc
Q 007687 554 -SNSA-RERNIVISGYT 568 (593)
Q Consensus 554 -~~~~-~l~~l~I~~~~ 568 (593)
+... +|+.+.+.+++
T Consensus 463 ~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 463 IFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp TTTTCTTCCEEECCSSC
T ss_pred HhccCCcccEEECcCCC
Confidence 5555 78999987543
No 7
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=4.8e-25 Score=232.15 Aligned_cols=350 Identities=18% Similarity=0.194 Sum_probs=245.7
Q ss_pred CcEEEEcCCcceecCCCCCCcceeEEEeeccCcccccc--cccCCcccEEEccCccCc-ccchhhhccCCCCcEEEcCCC
Q 007687 194 ENFLVYAGVGLTEAPEVKGWENVRRISLMDNQITNLSE--VATCRHLLTLFLNQNKLQ-MIHNDFFRFMPSLKVLNLSHA 270 (593)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~-~~~~~~~~~l~~Lr~L~L~~~ 270 (593)
...+.+.+.+++.+|. -.+++++|++++|.+..++. +..+++|++|++++|.+. .+++..|.++++|++|+|++|
T Consensus 12 ~~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 12 GYNAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp TTEEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred ccccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 3456777778888887 33799999999999998744 389999999999999976 677777999999999999999
Q ss_pred CCCcC-CcccCCCCCCcEeeCCCCcCcc-cchh--hhccccCceeecccccccccc-chhhcCCCccCceeeccCCCCCC
Q 007687 271 ELTEL-PVGISDLVSLQHLDLSESDISE-LPGE--LKALVNLKCLNLEWTRNLITI-PRQLISNLSRLHVLRMFGASHNA 345 (593)
Q Consensus 271 ~l~~l-p~~i~~L~~L~~L~L~~~~i~~-lp~~--i~~L~~L~~L~l~~~~~l~~l-p~~~i~~l~~L~~L~l~~~~~~~ 345 (593)
.+..+ |..++++++|++|++++|.++. .|.. ++++++|++|++++|. +..+ |...++++++|++|++.++....
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccc
Confidence 99976 7899999999999999999985 4544 8999999999999994 5555 65558899999999999987642
Q ss_pred CCC-CCc------cccccCC------------cccchhhhcCCCCCceEEEEecCccc-hhhhhhcccccccceEEEecc
Q 007687 346 FDG-ASE------DSILFGG------------GALIVEELLGLKYLEVISFTLRSSHG-LQSVLSSHKLRCCTRALLLQC 405 (593)
Q Consensus 346 ~~~-~~~------~~~~~~~------------~~~~~~~L~~l~~L~~L~i~~~~~~~-~~~~~~~~~~~~~L~~L~l~~ 405 (593)
... .+. ...+... .......+..+++|+.|+++.+.... .+..+........++.|++++
T Consensus 169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 248 (455)
T 3v47_A 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248 (455)
T ss_dssp CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence 211 000 0000000 00001122344667777777654432 122121111224777888776
Q ss_pred cCCCce---------eeeccccc--cccccceeeccccccceeeeccCCcccccCCCCccEEEEeCCCCCCCCc--cccc
Q 007687 406 FNDSTS---------LEVSALAD--LKQLNRLRIAECKKLEELKMDYTGEVQQFVFHSLKKVEIVNSYKLKDLT--FLVF 472 (593)
Q Consensus 406 ~~~~~~---------~~~~~l~~--l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~--~l~~ 472 (593)
+..... .....+.. .++|++|++++|.... +.+.+.. .+++|+.|++++| .++.++ .++.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~-----~l~~L~~L~Ls~n-~l~~~~~~~~~~ 321 (455)
T 3v47_A 249 SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA-LLKSVFS-----HFTDLEQLTLAQN-EINKIDDNAFWG 321 (455)
T ss_dssp CTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE-ECTTTTT-----TCTTCCEEECTTS-CCCEECTTTTTT
T ss_pred ccccccccchhhhccCcccccccccccCceEEEecCccccc-cchhhcc-----cCCCCCEEECCCC-cccccChhHhcC
Confidence 632211 01111222 3689999999887544 4455554 3889999999998 566543 4788
Q ss_pred CCCCCEEeeccCccchhhcccCcccccccccCCCCCCcccceecccccccCccc-CCCCCCCCccceeeeccCcCCCCCC
Q 007687 473 APNLESIEVLGCVAMEEMVSVGKFAAVPEVTANLNPFAKLQYLDLVGAINLKSI-YWMPLSFPLLKYLRAMNCHKLKKLP 551 (593)
Q Consensus 473 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l-~~~~~~~~~L~~L~i~~C~~L~~lP 551 (593)
+++|++|++++|.. ..+.. ..+..+++|++|+++++ .+..+ +.....+++|++|+++++ +++.+|
T Consensus 322 l~~L~~L~Ls~N~l-~~~~~-----------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~ 387 (455)
T 3v47_A 322 LTHLLKLNLSQNFL-GSIDS-----------RMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN-QLKSVP 387 (455)
T ss_dssp CTTCCEEECCSSCC-CEECG-----------GGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCC
T ss_pred cccCCEEECCCCcc-CCcCh-----------hHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCC-ccccCC
Confidence 99999999999854 33221 14577899999999996 55655 445667899999999996 677888
Q ss_pred CCC-Ccc-cccceEEecc
Q 007687 552 FDS-NSA-RERNIVISGY 567 (593)
Q Consensus 552 ~~~-~~~-~l~~l~I~~~ 567 (593)
... ... +|+.+.+.++
T Consensus 388 ~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 388 DGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp TTTTTTCTTCCEEECCSS
T ss_pred HhHhccCCcccEEEccCC
Confidence 654 444 7899998754
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=8e-25 Score=239.07 Aligned_cols=147 Identities=21% Similarity=0.236 Sum_probs=115.7
Q ss_pred cEEEEcCCcceecCCCCCCcceeEEEeeccCcccccc--cccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCC
Q 007687 195 NFLVYAGVGLTEAPEVKGWENVRRISLMDNQITNLSE--VATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAEL 272 (593)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l 272 (593)
..+.+.+..++.+|.... +++++|++++|.+..++. +.++++|++|++++|.++.+++..|.++++|++|+|++|.+
T Consensus 14 ~~~~c~~~~l~~ip~~~~-~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l 92 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDIP-SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92 (606)
T ss_dssp TEEECTTSCCSSCCTTSC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CceEccCCCcccCCCCCC-CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcc
Confidence 456667777778876333 788888888888888765 37888888888888888888776688888888888888888
Q ss_pred CcC-CcccCCCCCCcEeeCCCCcCcccc-hhhhccccCceeecccccccc--ccchhhcCCCccCceeeccCCCCC
Q 007687 273 TEL-PVGISDLVSLQHLDLSESDISELP-GELKALVNLKCLNLEWTRNLI--TIPRQLISNLSRLHVLRMFGASHN 344 (593)
Q Consensus 273 ~~l-p~~i~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~--~lp~~~i~~l~~L~~L~l~~~~~~ 344 (593)
+.+ |..|+++++|++|++++|.++.+| ..++++++|++|++++| .+. .+|.. ++++++|++|++.++...
T Consensus 93 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 93 QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAY-FSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp CCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS-CCCCCCCCGG-GGTCTTCCEEECCSSCCC
T ss_pred cccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCC-cccceechHh-HhhcCCCCEEEccCCcce
Confidence 877 778888888888888888888776 56888888888888888 444 46765 888888888888877643
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=2.6e-25 Score=247.75 Aligned_cols=340 Identities=12% Similarity=0.076 Sum_probs=207.0
Q ss_pred cC-CCCCCcceeEEEeeccCccc------------------cccc-c--cCCcccEEEccCccCc-ccchhhhccCCCCc
Q 007687 207 AP-EVKGWENVRRISLMDNQITN------------------LSEV-A--TCRHLLTLFLNQNKLQ-MIHNDFFRFMPSLK 263 (593)
Q Consensus 207 ~~-~~~~~~~lr~L~l~~~~~~~------------------l~~~-~--~~~~Lr~L~l~~~~l~-~~~~~~~~~l~~Lr 263 (593)
+| .+..+++|+.|++++|.+.. +|.. . .+++|++|++++|.+. .+|.. |.++++|+
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQ 518 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCC
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCC
Confidence 54 35566777788888777776 6655 4 6777888888777744 44443 77777788
Q ss_pred EEEcCCCC-CCc--CCcccCCCC-------CCcEeeCCCCcCcccch--hhhccccCceeeccccccccccchhhcCCCc
Q 007687 264 VLNLSHAE-LTE--LPVGISDLV-------SLQHLDLSESDISELPG--ELKALVNLKCLNLEWTRNLITIPRQLISNLS 331 (593)
Q Consensus 264 ~L~L~~~~-l~~--lp~~i~~L~-------~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~ 331 (593)
+|+|++|. ++. +|..++++. +|++|++++|.++.+|. .++++++|++|++++| .+..+| . ++.++
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp-~-~~~L~ 595 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHLE-A-FGTNV 595 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTS-CCCBCC-C-CCTTS
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCC-Ccccch-h-hcCCC
Confidence 88887776 663 676665554 77777777777777777 7777777777777777 455777 3 77777
Q ss_pred cCceeeccCCCCCCCCCCC-------ccccccCC-cccchhhhcCCC--CCceEEEEecCccch-hhhhhccc--ccccc
Q 007687 332 RLHVLRMFGASHNAFDGAS-------EDSILFGG-GALIVEELLGLK--YLEVISFTLRSSHGL-QSVLSSHK--LRCCT 398 (593)
Q Consensus 332 ~L~~L~l~~~~~~~~~~~~-------~~~~~~~~-~~~~~~~L~~l~--~L~~L~i~~~~~~~~-~~~~~~~~--~~~~L 398 (593)
+|++|++.++....++..+ +.-.+... -...+..+..+. +|+.|+++.+..... +.+..... ...+|
T Consensus 596 ~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L 675 (876)
T 4ecn_A 596 KLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA 675 (876)
T ss_dssp EESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCE
T ss_pred cceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCc
Confidence 7777777777653221100 00000000 001112222222 255555554433221 11110000 11257
Q ss_pred eEEEecccCCCceeeeccccccccccceeeccccccceeeeccCCccc--ccCCCCccEEEEeCCCCCCCCcc-cc--cC
Q 007687 399 RALLLQCFNDSTSLEVSALADLKQLNRLRIAECKKLEELKMDYTGEVQ--QFVFHSLKKVEIVNSYKLKDLTF-LV--FA 473 (593)
Q Consensus 399 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~--~~~l~~L~~L~l~~c~~l~~l~~-l~--~l 473 (593)
+.|+++++.- ..++...+..+++|+.|++++|... .++........ ...+++|+.|+|++| .++.+|. +. .+
T Consensus 676 ~~L~Ls~N~L-~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l 752 (876)
T 4ecn_A 676 STVTLSYNEI-QKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTL 752 (876)
T ss_dssp EEEECCSSCC-CSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTC
T ss_pred CEEEccCCcC-CccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCC-CCccchHHhhhccC
Confidence 7777776642 2344233346778888888887544 33332222100 112238888888888 6667665 44 78
Q ss_pred CCCCEEeeccCccchhhcccCcccccccccCCCCCCcccceeccccc------ccCcccCCCCCCCCccceeeeccCcCC
Q 007687 474 PNLESIEVLGCVAMEEMVSVGKFAAVPEVTANLNPFAKLQYLDLVGA------INLKSIYWMPLSFPLLKYLRAMNCHKL 547 (593)
Q Consensus 474 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c------~~L~~l~~~~~~~~~L~~L~i~~C~~L 547 (593)
++|+.|+|++|.... ++ ..+..+++|+.|+|+++ .-...+|.....+++|++|++++|.-
T Consensus 753 ~~L~~L~Ls~N~L~~-lp------------~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L- 818 (876)
T 4ecn_A 753 PYLSNMDVSYNCFSS-FP------------TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI- 818 (876)
T ss_dssp TTCCEEECCSSCCSS-CC------------CGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-
T ss_pred CCcCEEEeCCCCCCc-cc------------hhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-
Confidence 888888888874432 32 25567889999988763 33455666666788999999988854
Q ss_pred CCCCCCCCcccccceEEeccc
Q 007687 548 KKLPFDSNSARERNIVISGYT 568 (593)
Q Consensus 548 ~~lP~~~~~~~l~~l~I~~~~ 568 (593)
..+|..... +|+.+.|.+++
T Consensus 819 ~~Ip~~l~~-~L~~LdLs~N~ 838 (876)
T 4ecn_A 819 RKVDEKLTP-QLYILDIADNP 838 (876)
T ss_dssp CBCCSCCCS-SSCEEECCSCT
T ss_pred CccCHhhcC-CCCEEECCCCC
Confidence 888887543 68888888775
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.93 E-value=1.5e-24 Score=236.85 Aligned_cols=345 Identities=18% Similarity=0.165 Sum_probs=225.6
Q ss_pred CcEEEEcCCcceecCCCCCCcceeEEEeeccCcccccc--cccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCC
Q 007687 194 ENFLVYAGVGLTEAPEVKGWENVRRISLMDNQITNLSE--VATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAE 271 (593)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~ 271 (593)
...+.+.+.+++.+|.... +.+++|++++|.+..++. +..+++|++|++++|.++.+++..|.++++|++|+|++|.
T Consensus 14 ~~~~~c~~~~l~~iP~~l~-~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLP-NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC-TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred CceEECCCCCcccCcCCCC-CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc
Confidence 3456677778888885332 589999999999999854 3889999999999999998877779999999999999999
Q ss_pred CCcC-CcccCCCCCCcEeeCCCCcCccc-chhhhccccCceeecccccccccc--chhhcCCCccCceeeccCCCCCCCC
Q 007687 272 LTEL-PVGISDLVSLQHLDLSESDISEL-PGELKALVNLKCLNLEWTRNLITI--PRQLISNLSRLHVLRMFGASHNAFD 347 (593)
Q Consensus 272 l~~l-p~~i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~l--p~~~i~~l~~L~~L~l~~~~~~~~~ 347 (593)
+..+ |..++++++|++|++++|.++.+ |..++++++|++|++++| .+..+ |. +..+++|++|++.++...
T Consensus 93 l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~--~~~l~~L~~L~L~~n~l~--- 166 (606)
T 3t6q_A 93 LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPK--GFPTEKLKVLDFQNNAIH--- 166 (606)
T ss_dssp CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCT--TCCCTTCCEEECCSSCCC---
T ss_pred ccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCC-cccccCccc--ccCCcccCEEEcccCccc---
Confidence 9876 77899999999999999999987 577899999999999999 56655 44 556999999999988763
Q ss_pred CCCccccccCCcccchhhhcCCCCCc--eEEEEecCccchhh-hhhcc--------------------------------
Q 007687 348 GASEDSILFGGGALIVEELLGLKYLE--VISFTLRSSHGLQS-VLSSH-------------------------------- 392 (593)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~L~~l~~L~--~L~i~~~~~~~~~~-~~~~~-------------------------------- 392 (593)
......++.+++|+ .|+++.+....... .+...
T Consensus 167 ------------~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~ 234 (606)
T 3t6q_A 167 ------------YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGT 234 (606)
T ss_dssp ------------EECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCC
T ss_pred ------------ccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechh
Confidence 22334455555565 33333322221110 00000
Q ss_pred --------------c--ccccceEEEecccCCCceeeeccccccccccceeeccccccceeeeccCCcccccCCCCccEE
Q 007687 393 --------------K--LRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIAECKKLEELKMDYTGEVQQFVFHSLKKV 456 (593)
Q Consensus 393 --------------~--~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~l~~L~~L 456 (593)
. ....++.|+++++. ...++...+..+++|++|++++|... .+ |.+.. .+++|+.|
T Consensus 235 ~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~-~l-p~~l~-----~l~~L~~L 306 (606)
T 3t6q_A 235 FEDMDDEDISPAVFEGLCEMSVESINLQKHY-FFNISSNTFHCFSGLQELDLTATHLS-EL-PSGLV-----GLSTLKKL 306 (606)
T ss_dssp CTTSCCCCCCGGGGGGGGGSEEEEEECTTCC-CSSCCTTTTTTCTTCSEEECTTSCCS-CC-CSSCC-----SCTTCCEE
T ss_pred hccccccccChhHhchhhcCceeEEEeecCc-cCccCHHHhccccCCCEEeccCCccC-CC-Chhhc-----ccccCCEE
Confidence 0 00145666666552 23333345667777888888777543 23 33333 26777777
Q ss_pred EEeCCCCCCCCc--ccccCCCCCEEeeccCccchhhccc--Cccccc----------ccc---cCCCCCCcccceecccc
Q 007687 457 EIVNSYKLKDLT--FLVFAPNLESIEVLGCVAMEEMVSV--GKFAAV----------PEV---TANLNPFAKLQYLDLVG 519 (593)
Q Consensus 457 ~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~~----------~~~---~~~~~~~~~L~~L~l~~ 519 (593)
++++| .++.++ .++.+++|++|++++|.....++.. .....+ ... +..+..+++|++|++++
T Consensus 307 ~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~ 385 (606)
T 3t6q_A 307 VLSAN-KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY 385 (606)
T ss_dssp ECTTC-CCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCS
T ss_pred ECccC-CcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCC
Confidence 77777 455442 3666777777777776543222211 000000 011 22456677777777777
Q ss_pred cccCccc-CCCCCCCCccceeeeccCcCCCCCCCC-CCcc-cccceEEecc
Q 007687 520 AINLKSI-YWMPLSFPLLKYLRAMNCHKLKKLPFD-SNSA-RERNIVISGY 567 (593)
Q Consensus 520 c~~L~~l-~~~~~~~~~L~~L~i~~C~~L~~lP~~-~~~~-~l~~l~I~~~ 567 (593)
+. +..+ +.....+++|++|++.+|.--...|.. +... +|+.+.+.+|
T Consensus 386 n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 435 (606)
T 3t6q_A 386 NE-PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435 (606)
T ss_dssp CS-CEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC
T ss_pred Cc-CCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCC
Confidence 53 3333 334456788888888777544333433 4444 6777877765
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=1.7e-25 Score=244.79 Aligned_cols=319 Identities=12% Similarity=0.132 Sum_probs=162.4
Q ss_pred CCcceeEEEeeccCccc-cccc-ccCCcccEEEccCcc-Ccc--cchhhhccC------CCCcEEEcCCCCCCcCCc--c
Q 007687 212 GWENVRRISLMDNQITN-LSEV-ATCRHLLTLFLNQNK-LQM--IHNDFFRFM------PSLKVLNLSHAELTELPV--G 278 (593)
Q Consensus 212 ~~~~lr~L~l~~~~~~~-l~~~-~~~~~Lr~L~l~~~~-l~~--~~~~~~~~l------~~Lr~L~L~~~~l~~lp~--~ 278 (593)
.++++++|++++|.+.. +|.. .++++|++|++++|. ++. +|.. ++.+ ++|++|++++|.++.+|. .
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~-~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~ 325 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD-WQALADAPVGEKIQIIYIGYNNLKTFPVETS 325 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHH-HHHHHHSGGGGTCCEEECCSSCCSSCCCHHH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHH-HHhhhccccCCCCCEEECCCCcCCccCchhh
Confidence 34555555555554332 3322 445555555555554 443 4433 3333 555555555555555555 5
Q ss_pred cCCCCCCcEeeCCCCcCc-ccchhhhccccCceeeccccccccccchhhcCCCcc-CceeeccCCCCCCCCCCCcccccc
Q 007687 279 ISDLVSLQHLDLSESDIS-ELPGELKALVNLKCLNLEWTRNLITIPRQLISNLSR-LHVLRMFGASHNAFDGASEDSILF 356 (593)
Q Consensus 279 i~~L~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~ 356 (593)
++++++|++|++++|.++ .+| .++.+++|++|++++| .+..+|.. ++++++ |++|++.++...
T Consensus 326 l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N-~l~~lp~~-l~~l~~~L~~L~Ls~N~l~------------ 390 (636)
T 4eco_A 326 LQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYN-QITEIPAN-FCGFTEQVENLSFAHNKLK------------ 390 (636)
T ss_dssp HTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSS-EEEECCTT-SEEECTTCCEEECCSSCCS------------
T ss_pred hccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCC-ccccccHh-hhhhcccCcEEEccCCcCc------------
Confidence 555555555555555555 555 4555555555555555 34455554 555555 555555555432
Q ss_pred CCcccchhhhcCC--CCCceEEEEecCccch-hhhhh----cccccccceEEEecccCCCceeeeccccccccccceeec
Q 007687 357 GGGALIVEELLGL--KYLEVISFTLRSSHGL-QSVLS----SHKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIA 429 (593)
Q Consensus 357 ~~~~~~~~~L~~l--~~L~~L~i~~~~~~~~-~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 429 (593)
..+..+..+ .+|+.|+++.+..... +..+. ..-...+|+.|+++++.- ..++...+..+++|++|+++
T Consensus 391 ----~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l-~~lp~~~~~~l~~L~~L~Ls 465 (636)
T 4eco_A 391 ----YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI-SKFPKELFSTGSPLSSINLM 465 (636)
T ss_dssp ----SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCC-CSCCTHHHHTTCCCSEEECC
T ss_pred ----ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCcc-CcCCHHHHccCCCCCEEECC
Confidence 112222222 2555565554443221 11111 000123666666666532 23332334446677777777
Q ss_pred cccccceeeeccCCccc--ccCCCCccEEEEeCCCCCCCCcc-cc--cCCCCCEEeeccCccchhhcccCcccccccccC
Q 007687 430 ECKKLEELKMDYTGEVQ--QFVFHSLKKVEIVNSYKLKDLTF-LV--FAPNLESIEVLGCVAMEEMVSVGKFAAVPEVTA 504 (593)
Q Consensus 430 ~~~~~~~l~~~~~~~~~--~~~l~~L~~L~l~~c~~l~~l~~-l~--~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 504 (593)
+|... .++........ ...+++|+.|++++| .++.+|. +. .+++|++|++++|.... ++.
T Consensus 466 ~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~------------ 530 (636)
T 4eco_A 466 GNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPT------------ 530 (636)
T ss_dssp SSCCS-BCCSSSSEETTEECTTGGGCCEEECCSS-CCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCC------------
T ss_pred CCCCC-CcCHHHhccccccccccCCccEEECcCC-cCCccChhhhhccCCCcCEEECCCCCCCC-cCh------------
Confidence 76544 33332221100 001226777777777 5556554 43 67777777777764332 322
Q ss_pred CCCCCcccceecccc------cccCcccCCCCCCCCccceeeeccCcCCCCCCCCCCcccccceEEeccc
Q 007687 505 NLNPFAKLQYLDLVG------AINLKSIYWMPLSFPLLKYLRAMNCHKLKKLPFDSNSARERNIVISGYT 568 (593)
Q Consensus 505 ~~~~~~~L~~L~l~~------c~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lP~~~~~~~l~~l~I~~~~ 568 (593)
.+..+++|+.|++++ +.-...+|.....+++|++|++++|.- +.+|.... .+|+.+.+.+++
T Consensus 531 ~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~-~~L~~L~Ls~N~ 598 (636)
T 4eco_A 531 QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT-PNISVLDIKDNP 598 (636)
T ss_dssp GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-TTCCEEECCSCT
T ss_pred hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh-CcCCEEECcCCC
Confidence 445567777777743 222344555555677777777777643 66776543 256777766653
No 12
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=1.1e-24 Score=224.58 Aligned_cols=303 Identities=16% Similarity=0.180 Sum_probs=241.7
Q ss_pred CCCcceeEEEeeccCccccccc--ccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCC-cccCCCCCCcE
Q 007687 211 KGWENVRRISLMDNQITNLSEV--ATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELP-VGISDLVSLQH 287 (593)
Q Consensus 211 ~~~~~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~ 287 (593)
..+++++++++.++.+..+|.. ..+++|++|++++|.++.+++..|..+++|++|++++|.++.+| ..++++++|++
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 3457999999999999999874 78999999999999999998877999999999999999999884 56899999999
Q ss_pred eeCCCCcCcccchhh-hccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccchhhh
Q 007687 288 LDLSESDISELPGEL-KALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEEL 366 (593)
Q Consensus 288 L~L~~~~i~~lp~~i-~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L 366 (593)
|++++|.++.+|..+ +++++|++|++++| .+..++...++++++|++|++.++... .. .+
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~--------------~~----~~ 182 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLT--------------HV----DL 182 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCS--------------BC----CG
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCC--------------cc----cc
Confidence 999999999999774 89999999999999 567776666899999999999988764 11 35
Q ss_pred cCCCCCceEEEEecCccchhhhhhcccccccceEEEecccCCCceeeeccccccccccceeeccccccceeeeccCCccc
Q 007687 367 LGLKYLEVISFTLRSSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIAECKKLEELKMDYTGEVQ 446 (593)
Q Consensus 367 ~~l~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~ 446 (593)
+.+++|+.|.++.+....+ .....|+.|+++++. ...++ ...+++|+.|++.+|.... ..+..
T Consensus 183 ~~l~~L~~L~l~~n~l~~~-------~~~~~L~~L~l~~n~-l~~~~---~~~~~~L~~L~l~~n~l~~---~~~l~--- 245 (390)
T 3o6n_A 183 SLIPSLFHANVSYNLLSTL-------AIPIAVEELDASHNS-INVVR---GPVNVELTILKLQHNNLTD---TAWLL--- 245 (390)
T ss_dssp GGCTTCSEEECCSSCCSEE-------ECCSSCSEEECCSSC-CCEEE---CCCCSSCCEEECCSSCCCC---CGGGG---
T ss_pred ccccccceeeccccccccc-------CCCCcceEEECCCCe-eeecc---ccccccccEEECCCCCCcc---cHHHc---
Confidence 6678889998886654433 233489999999874 33333 2335789999999987543 23433
Q ss_pred ccCCCCccEEEEeCCCCCCCC--cccccCCCCCEEeeccCccchhhcccCcccccccccCCCCCCcccceecccccccCc
Q 007687 447 QFVFHSLKKVEIVNSYKLKDL--TFLVFAPNLESIEVLGCVAMEEMVSVGKFAAVPEVTANLNPFAKLQYLDLVGAINLK 524 (593)
Q Consensus 447 ~~~l~~L~~L~l~~c~~l~~l--~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~ 524 (593)
.+++|+.|+++++ .++.. ..++.+++|++|++++|.. +.++ .....+|+|++|+++++ .+.
T Consensus 246 --~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~------------~~~~~l~~L~~L~L~~n-~l~ 308 (390)
T 3o6n_A 246 --NYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNRL-VALN------------LYGQPIPTLKVLDLSHN-HLL 308 (390)
T ss_dssp --GCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECCSSCC-CEEE------------CSSSCCTTCCEEECCSS-CCC
T ss_pred --CCCCccEEECCCC-cCCCcChhHccccccCCEEECCCCcC-cccC------------cccCCCCCCCEEECCCC-cce
Confidence 4899999999999 56654 2478899999999999843 3332 24567899999999997 677
Q ss_pred ccCCCCCCCCccceeeeccCcCCCCCCCCCCcccccceEEeccc
Q 007687 525 SIYWMPLSFPLLKYLRAMNCHKLKKLPFDSNSARERNIVISGYT 568 (593)
Q Consensus 525 ~l~~~~~~~~~L~~L~i~~C~~L~~lP~~~~~~~l~~l~I~~~~ 568 (593)
.++.....+++|++|++.+|+ ++.+|..... +|+.+.+.+++
T Consensus 309 ~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~-~L~~L~l~~N~ 350 (390)
T 3o6n_A 309 HVERNQPQFDRLENLYLDHNS-IVTLKLSTHH-TLKNLTLSHND 350 (390)
T ss_dssp CCGGGHHHHTTCSEEECCSSC-CCCCCCCTTC-CCSEEECCSSC
T ss_pred ecCccccccCcCCEEECCCCc-cceeCchhhc-cCCEEEcCCCC
Confidence 777766778999999999985 7777743222 68999998653
No 13
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.92 E-value=2.2e-24 Score=235.62 Aligned_cols=266 Identities=18% Similarity=0.141 Sum_probs=126.2
Q ss_pred cCCCCCCcEeeCCCCcCcccchhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCC
Q 007687 279 ISDLVSLQHLDLSESDISELPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGG 358 (593)
Q Consensus 279 i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 358 (593)
++.+++|++|++++|.++.+|..++.+++|++|++++| .+..+++..++++++|++|++.++...
T Consensus 274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~-------------- 338 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKR-------------- 338 (606)
T ss_dssp TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTC-CCSBGGGGCGGGCTTCSEEECCSCSSC--------------
T ss_pred hccccCCCEEeccCCccCCCChhhcccccCCEEECccC-CcCcCchhhhhccCcCCEEECCCCCcc--------------
Confidence 33444455555555544445444444555555555544 233332222444555555554444321
Q ss_pred cccchhhhcCCCCCceEEEEecCccchhhhhhcccccccceEEEecccCCCceeeeccccccccccceeeccccccceee
Q 007687 359 GALIVEELLGLKYLEVISFTLRSSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIAECKKLEELK 438 (593)
Q Consensus 359 ~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~ 438 (593)
.......++.+++|+.|+++.+...............++|+.|+++++. ........+..+++|++|++++|......+
T Consensus 339 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 417 (606)
T 3t6q_A 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFTRLKVKDA 417 (606)
T ss_dssp CBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEECTTTTTTCTTCSEEECTTCCEECCTT
T ss_pred cccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc-CCcCCHHHhcCCccCCeEECCCCcCCCccc
Confidence 1111223556666666666655444332111222233466666666653 223333455566666666666665332111
Q ss_pred eccCCcccccCCCCccEEEEeCCCCCCCCc--ccccCCCCCEEeeccCccchhhccc-C---ccc----------ccccc
Q 007687 439 MDYTGEVQQFVFHSLKKVEIVNSYKLKDLT--FLVFAPNLESIEVLGCVAMEEMVSV-G---KFA----------AVPEV 502 (593)
Q Consensus 439 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~-~---~~~----------~~~~~ 502 (593)
+.+.. .+++|+.|++++| .+...+ .++.+++|++|++++|......+.. . ... .+...
T Consensus 418 ~~~~~-----~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 491 (606)
T 3t6q_A 418 QSPFQ-----NLHLLKVLNLSHS-LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI 491 (606)
T ss_dssp CCTTT-----TCTTCCEEECTTC-CCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEE
T ss_pred chhhh-----CcccCCEEECCCC-ccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCcc
Confidence 22222 2566666666666 333322 2556666666666666433211110 0 000 00011
Q ss_pred -cCCCCCCcccceecccccccCcccCCCCCCCCccceeeeccCcCCCCCCC-CCCcc-cccceEEeccc
Q 007687 503 -TANLNPFAKLQYLDLVGAINLKSIYWMPLSFPLLKYLRAMNCHKLKKLPF-DSNSA-RERNIVISGYT 568 (593)
Q Consensus 503 -~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lP~-~~~~~-~l~~l~I~~~~ 568 (593)
+..+..+++|+.|+++++.--...+.....+++| +|++++| +++.+|. .+... +++.+.+.+++
T Consensus 492 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN-HISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred ChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC-cccccCHhhcccCCCCCEEeCCCCC
Confidence 1245566677777777653222233334456666 7777776 3444443 33334 67888876543
No 14
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=2.2e-24 Score=227.46 Aligned_cols=302 Identities=18% Similarity=0.209 Sum_probs=203.8
Q ss_pred CcceeEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCcccCCCCCCcEeeCCC
Q 007687 213 WENVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISDLVSLQHLDLSE 292 (593)
Q Consensus 213 ~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~ 292 (593)
+++++.|++.++.+..++....+++|++|++++|.++.+++ +..+++|++|++++|.+..++. ++++++|++|++++
T Consensus 45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~ 121 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFN 121 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred hccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEECCC
Confidence 46899999999999999988899999999999999999987 8999999999999999998876 99999999999999
Q ss_pred CcCcccchhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccchhhhcCCCCC
Q 007687 293 SDISELPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELLGLKYL 372 (593)
Q Consensus 293 ~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L 372 (593)
|.++.+|. +.++++|++|++++| .+..+|. ++++++|++|++.+... ....+..+++|
T Consensus 122 n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~~~~------------------~~~~~~~l~~L 179 (466)
T 1o6v_A 122 NQITDIDP-LKNLTNLNRLELSSN-TISDISA--LSGLTSLQQLSFGNQVT------------------DLKPLANLTTL 179 (466)
T ss_dssp SCCCCCGG-GTTCTTCSEEEEEEE-EECCCGG--GTTCTTCSEEEEEESCC------------------CCGGGTTCTTC
T ss_pred CCCCCChH-HcCCCCCCEEECCCC-ccCCChh--hccCCcccEeecCCccc------------------CchhhccCCCC
Confidence 99999987 899999999999999 6777875 89999999999864221 11224455555
Q ss_pred ceEEEEecCccchhhhhhc------------------ccccccceEEEecccCCCceeeeccccccccccceeecccccc
Q 007687 373 EVISFTLRSSHGLQSVLSS------------------HKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIAECKKL 434 (593)
Q Consensus 373 ~~L~i~~~~~~~~~~~~~~------------------~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 434 (593)
+.|+++.+....++.+... .....+|+.|+++++.- .. +..+..+++|++|++++|...
T Consensus 180 ~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l-~~--~~~l~~l~~L~~L~l~~n~l~ 256 (466)
T 1o6v_A 180 ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQL-KD--IGTLASLTNLTDLDLANNQIS 256 (466)
T ss_dssp CEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCC-CC--CGGGGGCTTCSEEECCSSCCC
T ss_pred CEEECcCCcCCCChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCc-cc--chhhhcCCCCCEEECCCCccc
Confidence 5555554433333211100 11123444444444421 11 123444555555555555432
Q ss_pred ceeeeccCCcccccCCCCccEEEEeCCCCCCCCcccccCCCCCEEeeccCccchhhcccCcccccccccCCCCCCcccce
Q 007687 435 EELKMDYTGEVQQFVFHSLKKVEIVNSYKLKDLTFLVFAPNLESIEVLGCVAMEEMVSVGKFAAVPEVTANLNPFAKLQY 514 (593)
Q Consensus 435 ~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 514 (593)
. +. . . ..+++|+.|++++| .++.++.++.+++|++|++++|... .+ + .+..+++|+.
T Consensus 257 ~-~~-~-~-----~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~l~-~~------------~-~~~~l~~L~~ 313 (466)
T 1o6v_A 257 N-LA-P-L-----SGLTKLTELKLGAN-QISNISPLAGLTALTNLELNENQLE-DI------------S-PISNLKNLTY 313 (466)
T ss_dssp C-CG-G-G-----TTCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCSSCCS-CC------------G-GGGGCTTCSE
T ss_pred c-ch-h-h-----hcCCCCCEEECCCC-ccCccccccCCCccCeEEcCCCccc-Cc------------h-hhcCCCCCCE
Confidence 2 11 1 1 12555666666655 4555555555666666666655321 11 1 2456788888
Q ss_pred ecccccccCcccCCCCCCCCccceeeeccCcCCCCCCCCCCcccccceEEeccc
Q 007687 515 LDLVGAINLKSIYWMPLSFPLLKYLRAMNCHKLKKLPFDSNSARERNIVISGYT 568 (593)
Q Consensus 515 L~l~~c~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lP~~~~~~~l~~l~I~~~~ 568 (593)
|++++| .+..++. ...+++|++|++.+| +++.+|......+|+.+.+.+|+
T Consensus 314 L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 314 LTLYFN-NISDISP-VSSLTKLQRLFFYNN-KVSDVSSLANLTNINWLSAGHNQ 364 (466)
T ss_dssp EECCSS-CCSCCGG-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC
T ss_pred EECcCC-cCCCchh-hccCccCCEeECCCC-ccCCchhhccCCCCCEEeCCCCc
Confidence 888886 4554443 456889999999888 56666532222268888887663
No 15
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=4.9e-25 Score=246.61 Aligned_cols=336 Identities=18% Similarity=0.186 Sum_probs=197.0
Q ss_pred cEEEEcCCcceecCCCCCCcceeEEEeeccCccc-ccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCC
Q 007687 195 NFLVYAGVGLTEAPEVKGWENVRRISLMDNQITN-LSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELT 273 (593)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~-l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~ 273 (593)
..+.+.++.+........++++++|++++|.+.. ++....+++|++|++++|.++...+..+..+++|++|++++|.+.
T Consensus 181 ~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 260 (768)
T 3rgz_A 181 KHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 260 (768)
T ss_dssp CEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCE
T ss_pred CEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCccc
Confidence 3455555555444444566777777777777765 333467778888888888777554445777788888888777766
Q ss_pred c-CCcccCCCCCCcEeeCCCCcCc-ccchhhhcc-ccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCC
Q 007687 274 E-LPVGISDLVSLQHLDLSESDIS-ELPGELKAL-VNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGAS 350 (593)
Q Consensus 274 ~-lp~~i~~L~~L~~L~L~~~~i~-~lp~~i~~L-~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~ 350 (593)
. +|.. .+++|++|++++|.++ .+|..+..+ ++|++|++++|.....+|.. ++++++|++|++.++...
T Consensus 261 ~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~------ 331 (768)
T 3rgz_A 261 GPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNFS------ 331 (768)
T ss_dssp ESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSSEEE------
T ss_pred CccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCCCccc------
Confidence 3 3332 5666777777776666 666666554 77777777777444455655 777777777777776542
Q ss_pred ccccccCCcccchh-hhcCCCCCceEEEEecCcc-chhhhhhc----------------------c--cccccceEEEec
Q 007687 351 EDSILFGGGALIVE-ELLGLKYLEVISFTLRSSH-GLQSVLSS----------------------H--KLRCCTRALLLQ 404 (593)
Q Consensus 351 ~~~~~~~~~~~~~~-~L~~l~~L~~L~i~~~~~~-~~~~~~~~----------------------~--~~~~~L~~L~l~ 404 (593)
+..+. .+..+++|+.|+++.+... .++..+.. . ....+|+.|+++
T Consensus 332 ---------~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~ 402 (768)
T 3rgz_A 332 ---------GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 402 (768)
T ss_dssp ---------EECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECC
T ss_pred ---------CcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECC
Confidence 11222 2555555555555443322 11110000 0 002345555555
Q ss_pred ccCCCceeeeccccccccccceeeccccccceeeeccCCcccccCCCCccEEEEeCCCCCCCCcc-cccCCCCCEEeecc
Q 007687 405 CFNDSTSLEVSALADLKQLNRLRIAECKKLEELKMDYTGEVQQFVFHSLKKVEIVNSYKLKDLTF-LVFAPNLESIEVLG 483 (593)
Q Consensus 405 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-l~~l~~L~~L~l~~ 483 (593)
++.-....+ ..+..+++|++|++++|..... .+.... .+++|+.|++++|.....+|. ++.+++|++|++++
T Consensus 403 ~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~-----~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 475 (768)
T 3rgz_A 403 NNGFTGKIP-PTLSNCSELVSLHLSFNYLSGT-IPSSLG-----SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475 (768)
T ss_dssp SSEEEEECC-GGGGGCTTCCEEECCSSEEESC-CCGGGG-----GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred CCccccccC-HHHhcCCCCCEEECcCCcccCc-ccHHHh-----cCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecC
Confidence 553221222 4556666677777766654332 233322 266677777776633223332 56667777777776
Q ss_pred CccchhhcccCcccccccccCCCCCCcccceecccccccCcccCCCCCCCCccceeeeccCcCCCCCCCCCCcc-cccce
Q 007687 484 CVAMEEMVSVGKFAAVPEVTANLNPFAKLQYLDLVGAINLKSIYWMPLSFPLLKYLRAMNCHKLKKLPFDSNSA-RERNI 562 (593)
Q Consensus 484 c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lP~~~~~~-~l~~l 562 (593)
|.....++. .+..+++|++|+++++.-...+|...+.+++|++|++++|.-...+|..+... +|+.+
T Consensus 476 N~l~~~~p~------------~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 543 (768)
T 3rgz_A 476 NDLTGEIPS------------GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWL 543 (768)
T ss_dssp SCCCSCCCG------------GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEE
T ss_pred CcccCcCCH------------HHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEE
Confidence 654333322 45567777778777765444666666667778888887775555677666555 67777
Q ss_pred EEecc
Q 007687 563 VISGY 567 (593)
Q Consensus 563 ~I~~~ 567 (593)
.+.++
T Consensus 544 ~Ls~N 548 (768)
T 3rgz_A 544 DLNTN 548 (768)
T ss_dssp ECCSS
T ss_pred ECCCC
Confidence 76644
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=1.7e-24 Score=234.69 Aligned_cols=144 Identities=22% Similarity=0.281 Sum_probs=83.8
Q ss_pred EEEEcCCcceecCCCCCCcceeEEEeeccCcccccc--cccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCC
Q 007687 196 FLVYAGVGLTEAPEVKGWENVRRISLMDNQITNLSE--VATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELT 273 (593)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~ 273 (593)
.+.+.+.++..+|... .+++++|++++|.+..++. +..+++|++|++++|.++.+++..|.++++|++|+|++|.++
T Consensus 11 ~~~c~~~~l~~ip~~l-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~ 89 (570)
T 2z63_A 11 TYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (570)
T ss_dssp EEECCSSCCSSCCSSS-CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EEEeCCCCccccCCCc-cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC
Confidence 4455555555555422 2456666666666665543 255666666666666666665555666666666666666666
Q ss_pred cCC-cccCCCCCCcEeeCCCCcCcccch-hhhccccCceeeccccccccc--cchhhcCCCccCceeeccCCC
Q 007687 274 ELP-VGISDLVSLQHLDLSESDISELPG-ELKALVNLKCLNLEWTRNLIT--IPRQLISNLSRLHVLRMFGAS 342 (593)
Q Consensus 274 ~lp-~~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~--lp~~~i~~l~~L~~L~l~~~~ 342 (593)
.+| ..|+++++|++|++++|.++.+|. .++++++|++|++++| .+.. +|.. ++++++|++|++.++.
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~-~~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNK 160 (570)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECTTSC
T ss_pred ccCHhhhcCccccccccccccccccCCCccccccccccEEecCCC-ccceecChhh-hcccCCCCEEeCcCCc
Confidence 553 456666666666666666665553 4566666666666666 3332 4554 5666666666665554
No 17
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=1.5e-24 Score=236.94 Aligned_cols=137 Identities=21% Similarity=0.280 Sum_probs=107.2
Q ss_pred CcEEEEcCCcceecC--CCCCCcceeEEEeeccCcccccc--cccCCcccEEEccCccCcccchhhhccCCCCcEEEcCC
Q 007687 194 ENFLVYAGVGLTEAP--EVKGWENVRRISLMDNQITNLSE--VATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSH 269 (593)
Q Consensus 194 ~~~~~~~~~~~~~~~--~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~ 269 (593)
-..+.+.++.+..++ .+..++++++|++++|.+..++. +..+++|++|++++|.++.+++..|+++++|++|++++
T Consensus 34 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 113 (606)
T 3vq2_A 34 TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE 113 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTT
T ss_pred cCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccC
Confidence 456777777777765 36778899999999998888754 37888999999999988888666688899999999999
Q ss_pred CCCCcCC-cccCCCCCCcEeeCCCCcCc--ccchhhhccccCceeeccccccccccchhhcCCCc
Q 007687 270 AELTELP-VGISDLVSLQHLDLSESDIS--ELPGELKALVNLKCLNLEWTRNLITIPRQLISNLS 331 (593)
Q Consensus 270 ~~l~~lp-~~i~~L~~L~~L~L~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~ 331 (593)
|.+..+| ..++++++|++|++++|.++ .+|..++++++|++|++++| .+..++...++.++
T Consensus 114 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~ 177 (606)
T 3vq2_A 114 TKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFLR 177 (606)
T ss_dssp SCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS-CCCEECTTTTHHHH
T ss_pred CccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC-cceecChhhhhhhh
Confidence 9888775 67888999999999999887 47888888999999988888 44444432244333
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2.9e-24 Score=233.57 Aligned_cols=302 Identities=16% Similarity=0.183 Sum_probs=219.7
Q ss_pred CCcceeEEEeeccCccccccc--ccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCc-ccCCCCCCcEe
Q 007687 212 GWENVRRISLMDNQITNLSEV--ATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPV-GISDLVSLQHL 288 (593)
Q Consensus 212 ~~~~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~L~~L~~L 288 (593)
.+.+++.+++.++.+..+|.. ..+++|++|++++|.++.+++..|..+++|++|+|++|.++.+|. .++++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 457889999999999998875 789999999999999999988779999999999999999998854 67999999999
Q ss_pred eCCCCcCcccchh-hhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccchhhhc
Q 007687 289 DLSESDISELPGE-LKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELL 367 (593)
Q Consensus 289 ~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 367 (593)
+|++|.++.+|.. ++++++|++|++++| .+..+|+..++++++|++|++.++... .. .++
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~--------------~~----~~~ 189 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLT--------------HV----DLS 189 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCS--------------BC----CGG
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCC--------------Cc----Chh
Confidence 9999999999977 489999999999999 566676655999999999999988764 11 245
Q ss_pred CCCCCceEEEEecCccchhhhhhcccccccceEEEecccCCCceeeeccccccccccceeeccccccceeeeccCCcccc
Q 007687 368 GLKYLEVISFTLRSSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIAECKKLEELKMDYTGEVQQ 447 (593)
Q Consensus 368 ~l~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~ 447 (593)
.+++|+.|.++.+....+ .....|+.|+++++. ...++. ...++|+.|++++|.... +.+..
T Consensus 190 ~l~~L~~L~l~~n~l~~l-------~~~~~L~~L~ls~n~-l~~~~~---~~~~~L~~L~L~~n~l~~---~~~l~---- 251 (597)
T 3oja_B 190 LIPSLFHANVSYNLLSTL-------AIPIAVEELDASHNS-INVVRG---PVNVELTILKLQHNNLTD---TAWLL---- 251 (597)
T ss_dssp GCTTCSEEECCSSCCSEE-------ECCTTCSEEECCSSC-CCEEEC---SCCSCCCEEECCSSCCCC---CGGGG----
T ss_pred hhhhhhhhhcccCccccc-------cCCchhheeeccCCc-cccccc---ccCCCCCEEECCCCCCCC---Chhhc----
Confidence 567777777776544332 223467778877764 223321 123578888888776443 23333
Q ss_pred cCCCCccEEEEeCCCCCCCCc--ccccCCCCCEEeeccCccchhhcccCcccccccccCCCCCCcccceecccccccCcc
Q 007687 448 FVFHSLKKVEIVNSYKLKDLT--FLVFAPNLESIEVLGCVAMEEMVSVGKFAAVPEVTANLNPFAKLQYLDLVGAINLKS 525 (593)
Q Consensus 448 ~~l~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~ 525 (593)
.+++|+.|++++| .+..++ .++.+++|++|+|++|.. ..++ .....+|+|+.|+++++ .+..
T Consensus 252 -~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~------------~~~~~l~~L~~L~Ls~N-~l~~ 315 (597)
T 3oja_B 252 -NYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNRL-VALN------------LYGQPIPTLKVLDLSHN-HLLH 315 (597)
T ss_dssp -GCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECTTSCC-CEEE------------CSSSCCTTCCEEECCSS-CCCC
T ss_pred -cCCCCCEEECCCC-ccCCCCHHHhcCccCCCEEECCCCCC-CCCC------------cccccCCCCcEEECCCC-CCCc
Confidence 3778888888877 455442 367778888888887743 2222 24456788888888875 5556
Q ss_pred cCCCCCCCCccceeeeccCcCCCCCCCCCCcccccceEEeccc
Q 007687 526 IYWMPLSFPLLKYLRAMNCHKLKKLPFDSNSARERNIVISGYT 568 (593)
Q Consensus 526 l~~~~~~~~~L~~L~i~~C~~L~~lP~~~~~~~l~~l~I~~~~ 568 (593)
+|.....+++|++|++++|. +..+|..... .|+.+.+.+++
T Consensus 316 i~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~-~L~~L~l~~N~ 356 (597)
T 3oja_B 316 VERNQPQFDRLENLYLDHNS-IVTLKLSTHH-TLKNLTLSHND 356 (597)
T ss_dssp CGGGHHHHTTCSEEECCSSC-CCCCCCCTTC-CCSEEECCSSC
T ss_pred cCcccccCCCCCEEECCCCC-CCCcChhhcC-CCCEEEeeCCC
Confidence 66555667888888888764 5566533221 57777776543
No 19
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=4e-24 Score=220.28 Aligned_cols=297 Identities=18% Similarity=0.228 Sum_probs=237.8
Q ss_pred CcEEEEcCCcceecCC--CCCCcceeEEEeeccCcccccc--cccCCcccEEEccCccCcccchhhhccCCCCcEEEcCC
Q 007687 194 ENFLVYAGVGLTEAPE--VKGWENVRRISLMDNQITNLSE--VATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSH 269 (593)
Q Consensus 194 ~~~~~~~~~~~~~~~~--~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~ 269 (593)
.+.+.+.+..+..+|. +..++++++|++++|.+..++. +..+++|++|++++|.++.+++..|.++++|++|++++
T Consensus 47 l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 126 (390)
T 3o6n_A 47 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 126 (390)
T ss_dssp CSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred ceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCC
Confidence 4667788888888886 5667899999999999998865 38899999999999999999888899999999999999
Q ss_pred CCCCcCCcc-cCCCCCCcEeeCCCCcCcccc-hhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCC
Q 007687 270 AELTELPVG-ISDLVSLQHLDLSESDISELP-GELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFD 347 (593)
Q Consensus 270 ~~l~~lp~~-i~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~ 347 (593)
|.++.+|.. ++++++|++|++++|.++.++ ..++.+++|++|++++| .++.++ ++.+++|++|++.++...
T Consensus 127 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~---~~~l~~L~~L~l~~n~l~--- 199 (390)
T 3o6n_A 127 NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LSLIPSLFHANVSYNLLS--- 199 (390)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS-CCSBCC---GGGCTTCSEEECCSSCCS---
T ss_pred CccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC-cCCccc---cccccccceeeccccccc---
Confidence 999999876 589999999999999999876 45899999999999999 566665 567899999999877543
Q ss_pred CCCccccccCCcccchhhhcCCCCCceEEEEecCccchhhhhhcccccccceEEEecccCCCceeeecccccccccccee
Q 007687 348 GASEDSILFGGGALIVEELLGLKYLEVISFTLRSSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLR 427 (593)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 427 (593)
.+....+|+.|+++.+....++. ....+|+.|+++++.-.. . ..+..+++|++|+
T Consensus 200 -----------------~~~~~~~L~~L~l~~n~l~~~~~-----~~~~~L~~L~l~~n~l~~-~--~~l~~l~~L~~L~ 254 (390)
T 3o6n_A 200 -----------------TLAIPIAVEELDASHNSINVVRG-----PVNVELTILKLQHNNLTD-T--AWLLNYPGLVEVD 254 (390)
T ss_dssp -----------------EEECCSSCSEEECCSSCCCEEEC-----CCCSSCCEEECCSSCCCC-C--GGGGGCTTCSEEE
T ss_pred -----------------ccCCCCcceEEECCCCeeeeccc-----cccccccEEECCCCCCcc-c--HHHcCCCCccEEE
Confidence 23445678888888766655432 223589999999885332 2 4678889999999
Q ss_pred eccccccceeeeccCCcccccCCCCccEEEEeCCCCCCCCcc-cccCCCCCEEeeccCccchhhcccCcccccccccCCC
Q 007687 428 IAECKKLEELKMDYTGEVQQFVFHSLKKVEIVNSYKLKDLTF-LVFAPNLESIEVLGCVAMEEMVSVGKFAAVPEVTANL 506 (593)
Q Consensus 428 l~~~~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~ 506 (593)
+++|.... +.+.... .+++|+.|+++++ .++.++. .+.+|+|++|++++|. +..++. .+
T Consensus 255 Ls~n~l~~-~~~~~~~-----~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~------------~~ 314 (390)
T 3o6n_A 255 LSYNELEK-IMYHPFV-----KMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVER------------NQ 314 (390)
T ss_dssp CCSSCCCE-EESGGGT-----TCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGG------------GH
T ss_pred CCCCcCCC-cChhHcc-----ccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCCc-ceecCc------------cc
Confidence 99986443 4455544 3899999999998 6777664 5678999999999984 333332 44
Q ss_pred CCCcccceecccccccCcccCCCCCCCCccceeeeccCc
Q 007687 507 NPFAKLQYLDLVGAINLKSIYWMPLSFPLLKYLRAMNCH 545 (593)
Q Consensus 507 ~~~~~L~~L~l~~c~~L~~l~~~~~~~~~L~~L~i~~C~ 545 (593)
..+++|+.|+++++ .+..++ ...+++|++|++.+++
T Consensus 315 ~~l~~L~~L~L~~N-~i~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 315 PQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp HHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSC
T ss_pred cccCcCCEEECCCC-ccceeC--chhhccCCEEEcCCCC
Confidence 57899999999986 466665 4568999999998864
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=1.2e-23 Score=227.29 Aligned_cols=358 Identities=17% Similarity=0.158 Sum_probs=222.6
Q ss_pred CcEEEEcCCcceecCCCCCCcceeEEEeeccCcccccc--cccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCC
Q 007687 194 ENFLVYAGVGLTEAPEVKGWENVRRISLMDNQITNLSE--VATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAE 271 (593)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~ 271 (593)
...+.+.+..++.+|.... +++++|++++|.+..++. +..+++|++|++++|.++.+++..|.++++|++|+|++|.
T Consensus 33 ~~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 111 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDLP-PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111 (562)
T ss_dssp CCEEECTTSCCCSCCTTSC-TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred CcEEEcCCCCCccCCCCCC-CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc
Confidence 3578888888888886433 899999999999999874 4899999999999999999987779999999999999999
Q ss_pred CCcCCcccCCCCCCcEeeCCCCcCcccc--hhhhccccCceeeccccccccccchhhcCCCccC--ceeeccCCCC--CC
Q 007687 272 LTELPVGISDLVSLQHLDLSESDISELP--GELKALVNLKCLNLEWTRNLITIPRQLISNLSRL--HVLRMFGASH--NA 345 (593)
Q Consensus 272 l~~lp~~i~~L~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L--~~L~l~~~~~--~~ 345 (593)
++.+|.. .+++|++|++++|.++.+| ..++++++|++|++++| .+...+ +..+++| ++|++.++.. ..
T Consensus 112 l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n-~l~~~~---~~~l~~L~L~~L~L~~n~l~~~~ 185 (562)
T 3a79_B 112 LQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA-KFRQLD---LLPVAHLHLSCILLDLVSYHIKG 185 (562)
T ss_dssp CCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECS-BCCTTT---TGGGTTSCEEEEEEEESSCCCCS
T ss_pred CCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCC-ccccCc---hhhhhhceeeEEEeecccccccc
Confidence 9999977 8999999999999999765 78999999999999998 444422 5556666 9999988765 21
Q ss_pred C-CCCCcccc--------------------------------ccCC------cccchhhhcCCCCCceEEEEecCccc--
Q 007687 346 F-DGASEDSI--------------------------------LFGG------GALIVEELLGLKYLEVISFTLRSSHG-- 384 (593)
Q Consensus 346 ~-~~~~~~~~--------------------------------~~~~------~~~~~~~L~~l~~L~~L~i~~~~~~~-- 384 (593)
. ++.+.... +... -...+..+..+++|+.+.+.......
T Consensus 186 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~ 265 (562)
T 3a79_B 186 GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC 265 (562)
T ss_dssp SSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHH
T ss_pred cCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHH
Confidence 1 11000000 0000 00011122333333333333211110
Q ss_pred hhhhhhcccccccceEEEecccCCCcee----------------------------------------------------
Q 007687 385 LQSVLSSHKLRCCTRALLLQCFNDSTSL---------------------------------------------------- 412 (593)
Q Consensus 385 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~---------------------------------------------------- 412 (593)
+....... ...+|+.|+++++.-.+.+
T Consensus 266 ~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~ 344 (562)
T 3a79_B 266 SVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI 344 (562)
T ss_dssp HHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCC
T ss_pred HHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcc
Confidence 00000000 0013333333332100000
Q ss_pred eeccccccccccceeeccccccceeeeccCCcccccCCCCccEEEEeCCCCCCCCcc----cccCCCCCEEeeccCccch
Q 007687 413 EVSALADLKQLNRLRIAECKKLEELKMDYTGEVQQFVFHSLKKVEIVNSYKLKDLTF----LVFAPNLESIEVLGCVAME 488 (593)
Q Consensus 413 ~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~----l~~l~~L~~L~l~~c~~l~ 488 (593)
+......+++|++|++++|..... .+.+.. .+++|+.|+++++ .++.++. ++.+++|++|++++|....
T Consensus 345 ~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~-----~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~ 417 (562)
T 3a79_B 345 HMVCPPSPSSFTFLNFTQNVFTDS-VFQGCS-----TLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNS 417 (562)
T ss_dssp CCCCCSSCCCCCEEECCSSCCCTT-TTTTCC-----SCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBS
T ss_pred cccCccCCCCceEEECCCCccccc-hhhhhc-----ccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCC
Confidence 000014556777777776654331 222322 3667777777776 5555432 5566777777777665433
Q ss_pred hhcccCc--ccccccc--------cCCCCCC-cccceecccccccCcccCCCCCCCCccceeeeccCcCCCCCCCC-CCc
Q 007687 489 EMVSVGK--FAAVPEV--------TANLNPF-AKLQYLDLVGAINLKSIYWMPLSFPLLKYLRAMNCHKLKKLPFD-SNS 556 (593)
Q Consensus 489 ~~~~~~~--~~~~~~~--------~~~~~~~-~~L~~L~l~~c~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lP~~-~~~ 556 (593)
.++.... ...+..+ ......+ ++|+.|+++++ .++.+|.....+++|++|+++++ +++.+|.. +..
T Consensus 418 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~ 495 (562)
T 3a79_B 418 HAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDR 495 (562)
T ss_dssp CCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTT
T ss_pred ccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCCHHHHhc
Confidence 2222100 0000000 0011223 68999999986 78888887778999999999987 68899987 555
Q ss_pred c-cccceEEeccc
Q 007687 557 A-RERNIVISGYT 568 (593)
Q Consensus 557 ~-~l~~l~I~~~~ 568 (593)
. +++.+.+.+.+
T Consensus 496 l~~L~~L~l~~N~ 508 (562)
T 3a79_B 496 LTSLQYIWLHDNP 508 (562)
T ss_dssp CTTCCCEECCSCC
T ss_pred CCCCCEEEecCCC
Confidence 5 78889887543
No 21
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=1.4e-24 Score=237.56 Aligned_cols=312 Identities=13% Similarity=0.156 Sum_probs=186.5
Q ss_pred cccc-ccCCcccEEEccCccCcc------------------cchhhhc--cCCCCcEEEcCCCCCC-cCCcccCCCCCCc
Q 007687 229 LSEV-ATCRHLLTLFLNQNKLQM------------------IHNDFFR--FMPSLKVLNLSHAELT-ELPVGISDLVSLQ 286 (593)
Q Consensus 229 l~~~-~~~~~Lr~L~l~~~~l~~------------------~~~~~~~--~l~~Lr~L~L~~~~l~-~lp~~i~~L~~L~ 286 (593)
+|.. .++++|++|++++|.++. +|.. ++ ++++|++|+|++|.+. .+|..++++++|+
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 4443 788999999999999888 7877 77 8999999999999765 7799999999999
Q ss_pred EeeCCCCc-Cc--ccchhhhcc------ccCceeeccccccccccch--hhcCCCccCceeeccCCCCCCCCCCCccccc
Q 007687 287 HLDLSESD-IS--ELPGELKAL------VNLKCLNLEWTRNLITIPR--QLISNLSRLHVLRMFGASHNAFDGASEDSIL 355 (593)
Q Consensus 287 ~L~L~~~~-i~--~lp~~i~~L------~~L~~L~l~~~~~l~~lp~--~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 355 (593)
+|++++|. ++ .+|..++++ ++|++|++++| .+..+|. . ++++++|++|++.++...
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~-l~~l~~L~~L~L~~N~l~----------- 343 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETS-LQKMKKLGMLECLYNQLE----------- 343 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHH-HTTCTTCCEEECCSCCCE-----------
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhh-hccCCCCCEEeCcCCcCc-----------
Confidence 99999997 88 489888887 99999999999 5668887 5 899999999999988753
Q ss_pred cCCcccchhhhcCCCCCceEEEEecCccchhhhhhccccccc-ceEEEecccCCCceeeeccccc--cccccceeecccc
Q 007687 356 FGGGALIVEELLGLKYLEVISFTLRSSHGLQSVLSSHKLRCC-TRALLLQCFNDSTSLEVSALAD--LKQLNRLRIAECK 432 (593)
Q Consensus 356 ~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~l~~--l~~L~~L~l~~~~ 432 (593)
+..+ .++.+++|+.|.++.+....++.. ...... |+.|+++++.- ..++ ..+.. +++|++|++++|.
T Consensus 344 ----g~ip-~~~~l~~L~~L~L~~N~l~~lp~~---l~~l~~~L~~L~Ls~N~l-~~lp-~~~~~~~l~~L~~L~Ls~N~ 413 (636)
T 4eco_A 344 ----GKLP-AFGSEIKLASLNLAYNQITEIPAN---FCGFTEQVENLSFAHNKL-KYIP-NIFDAKSVSVMSAIDFSYNE 413 (636)
T ss_dssp ----EECC-CCEEEEEESEEECCSSEEEECCTT---SEEECTTCCEEECCSSCC-SSCC-SCCCTTCSSCEEEEECCSSC
T ss_pred ----cchh-hhCCCCCCCEEECCCCccccccHh---hhhhcccCcEEEccCCcC-cccc-hhhhhcccCccCEEECcCCc
Confidence 1122 444455555555554433322221 111223 55555555432 1222 12222 2245555555544
Q ss_pred ccceeeeccCCc--ccccCCCCccEEEEeCCCCCCCCcc--cccCCCCCEEeeccCccchhhcccCccc-----------
Q 007687 433 KLEELKMDYTGE--VQQFVFHSLKKVEIVNSYKLKDLTF--LVFAPNLESIEVLGCVAMEEMVSVGKFA----------- 497 (593)
Q Consensus 433 ~~~~l~~~~~~~--~~~~~l~~L~~L~l~~c~~l~~l~~--l~~l~~L~~L~l~~c~~l~~~~~~~~~~----------- 497 (593)
.... .+.+... .....+++|+.|++++| .++.++. +..+++|++|++++|... .++......
T Consensus 414 l~~~-~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L 490 (636)
T 4eco_A 414 IGSV-DGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLL 490 (636)
T ss_dssp TTTT-TTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGC
T ss_pred CCCc-chhhhcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCc
Confidence 3221 1111110 00001234455555444 3333332 223444555554444322 221110000
Q ss_pred --------ccccccCCCC--CCcccceecccccccCcccCCCCCCCCccceeeecc------CcCCCCCCCCCCcc-ccc
Q 007687 498 --------AVPEVTANLN--PFAKLQYLDLVGAINLKSIYWMPLSFPLLKYLRAMN------CHKLKKLPFDSNSA-RER 560 (593)
Q Consensus 498 --------~~~~~~~~~~--~~~~L~~L~l~~c~~L~~l~~~~~~~~~L~~L~i~~------C~~L~~lP~~~~~~-~l~ 560 (593)
.+..++..+. .+++|+.|+++++ .+..+|.....+++|++|++++ +.-...+|..+..+ +|+
T Consensus 491 ~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~ 569 (636)
T 4eco_A 491 TSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLT 569 (636)
T ss_dssp CEEECCSSCCCBCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCC
T ss_pred cEEECcCCcCCccChhhhhccCCCcCEEECCCC-CCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCC
Confidence 0011222333 6778888888875 5555776666788888888854 33355677766665 677
Q ss_pred ceEEeccc
Q 007687 561 NIVISGYT 568 (593)
Q Consensus 561 ~l~I~~~~ 568 (593)
.+.+.++.
T Consensus 570 ~L~Ls~N~ 577 (636)
T 4eco_A 570 QLQIGSND 577 (636)
T ss_dssp EEECCSSC
T ss_pred EEECCCCc
Confidence 78777654
No 22
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.91 E-value=6.6e-24 Score=237.47 Aligned_cols=267 Identities=21% Similarity=0.228 Sum_probs=135.6
Q ss_pred cEEEEcCCcceecCCCCCCcceeEEEeeccCcc-ccccc-c-cCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCC
Q 007687 195 NFLVYAGVGLTEAPEVKGWENVRRISLMDNQIT-NLSEV-A-TCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAE 271 (593)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~-~l~~~-~-~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~ 271 (593)
..+.+.++.+........++++++|++++|.+. .+|.. . .+++|++|++++|.++...+..|+.+++|++|++++|.
T Consensus 250 ~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~ 329 (768)
T 3rgz_A 250 KLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 329 (768)
T ss_dssp CEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSE
T ss_pred CEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCc
Confidence 445555554443222224556666666665554 33332 1 23555555555555443322235555555555555555
Q ss_pred CC-cCCcc-cCCCCCCcEeeCCCCcCc-ccchhhhc---------------------------cccCceeeccccccccc
Q 007687 272 LT-ELPVG-ISDLVSLQHLDLSESDIS-ELPGELKA---------------------------LVNLKCLNLEWTRNLIT 321 (593)
Q Consensus 272 l~-~lp~~-i~~L~~L~~L~L~~~~i~-~lp~~i~~---------------------------L~~L~~L~l~~~~~l~~ 321 (593)
+. .+|.. ++++++|++|++++|.++ .+|..+.+ +++|++|++++|.....
T Consensus 330 l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 409 (768)
T 3rgz_A 330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 409 (768)
T ss_dssp EEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEE
T ss_pred ccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccc
Confidence 44 44443 455555555555555444 34443333 34455555555533335
Q ss_pred cchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccchhhhcCCCCCceEEEEecCccc-hhhhhhcccccccceE
Q 007687 322 IPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELLGLKYLEVISFTLRSSHG-LQSVLSSHKLRCCTRA 400 (593)
Q Consensus 322 lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~-~~~~~~~~~~~~~L~~ 400 (593)
+|.. ++++++|++|++.++... ...+..++.+++|+.|.++.+.... .+.. ....++|+.
T Consensus 410 ~p~~-l~~l~~L~~L~Ls~N~l~---------------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~---~~~l~~L~~ 470 (768)
T 3rgz_A 410 IPPT-LSNCSELVSLHLSFNYLS---------------GTIPSSLGSLSKLRDLKLWLNMLEGEIPQE---LMYVKTLET 470 (768)
T ss_dssp CCGG-GGGCTTCCEEECCSSEEE---------------SCCCGGGGGCTTCCEEECCSSCCCSCCCGG---GGGCTTCCE
T ss_pred cCHH-HhcCCCCCEEECcCCccc---------------CcccHHHhcCCCCCEEECCCCcccCcCCHH---HcCCCCceE
Confidence 5554 777778888887776542 2344455666666666666544331 1111 122345666
Q ss_pred EEecccCCCceeeeccccccccccceeeccccccceeeeccCCcccccCCCCccEEEEeCCCCCCCCc-ccccCCCCCEE
Q 007687 401 LLLQCFNDSTSLEVSALADLKQLNRLRIAECKKLEELKMDYTGEVQQFVFHSLKKVEIVNSYKLKDLT-FLVFAPNLESI 479 (593)
Q Consensus 401 L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L 479 (593)
|+++++.-....+ ..+..+++|++|++++|..... .|.+.+. +++|+.|++++|.....+| .++.+++|++|
T Consensus 471 L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~-~p~~~~~-----l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 543 (768)
T 3rgz_A 471 LILDFNDLTGEIP-SGLSNCTNLNWISLSNNRLTGE-IPKWIGR-----LENLAILKLSNNSFSGNIPAELGDCRSLIWL 543 (768)
T ss_dssp EECCSSCCCSCCC-GGGGGCTTCCEEECCSSCCCSC-CCGGGGG-----CTTCCEEECCSSCCEEECCGGGGGCTTCCEE
T ss_pred EEecCCcccCcCC-HHHhcCCCCCEEEccCCccCCc-CChHHhc-----CCCCCEEECCCCcccCcCCHHHcCCCCCCEE
Confidence 6666654333333 4455666666666666654432 3444432 5666666666663222333 25566666666
Q ss_pred eeccCccc
Q 007687 480 EVLGCVAM 487 (593)
Q Consensus 480 ~l~~c~~l 487 (593)
++++|+..
T Consensus 544 ~Ls~N~l~ 551 (768)
T 3rgz_A 544 DLNTNLFN 551 (768)
T ss_dssp ECCSSEEE
T ss_pred ECCCCccC
Confidence 66666543
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=9.2e-24 Score=229.60 Aligned_cols=285 Identities=16% Similarity=0.168 Sum_probs=234.9
Q ss_pred ccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCC-cccCCCCCCcEeeCCCCcCcccchh-hhccccCce
Q 007687 233 ATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELP-VGISDLVSLQHLDLSESDISELPGE-LKALVNLKC 310 (593)
Q Consensus 233 ~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~ 310 (593)
..+.+++.|+++++.+..+|+.+|..+++|++|+|++|.++.+| ..++.+++|++|+|++|.++.+|.. ++++++|++
T Consensus 48 l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 46789999999999999999998999999999999999999885 4899999999999999999988754 699999999
Q ss_pred eeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccchhhhcCCCCCceEEEEecCccchhhhhh
Q 007687 311 LNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELLGLKYLEVISFTLRSSHGLQSVLS 390 (593)
Q Consensus 311 L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~ 390 (593)
|++++| .+..+|.++++++++|++|++.++... ...+..++.+++|+.|+++.+....++
T Consensus 128 L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~---------------~~~~~~~~~l~~L~~L~L~~N~l~~~~---- 187 (597)
T 3oja_B 128 LVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLE---------------RIEDDTFQATTSLQNLQLSSNRLTHVD---- 187 (597)
T ss_dssp EECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC---------------BCCTTTTTTCTTCCEEECTTSCCSBCC----
T ss_pred EEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCC---------------CCChhhhhcCCcCcEEECcCCCCCCcC----
Confidence 999999 788999886799999999999998763 334456888999999999877665542
Q ss_pred cccccccceEEEecccCCCceeeeccccccccccceeeccccccceeeeccCCcccccCCCCccEEEEeCCCCCCCCccc
Q 007687 391 SHKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIAECKKLEELKMDYTGEVQQFVFHSLKKVEIVNSYKLKDLTFL 470 (593)
Q Consensus 391 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~l 470 (593)
....+.|+.|+++++.- ..+...++|+.|++++|.... ++. . .+++|+.|++++| .++.++++
T Consensus 188 -~~~l~~L~~L~l~~n~l------~~l~~~~~L~~L~ls~n~l~~-~~~-~-------~~~~L~~L~L~~n-~l~~~~~l 250 (597)
T 3oja_B 188 -LSLIPSLFHANVSYNLL------STLAIPIAVEELDASHNSINV-VRG-P-------VNVELTILKLQHN-NLTDTAWL 250 (597)
T ss_dssp -GGGCTTCSEEECCSSCC------SEEECCTTCSEEECCSSCCCE-EEC-S-------CCSCCCEEECCSS-CCCCCGGG
T ss_pred -hhhhhhhhhhhcccCcc------ccccCCchhheeeccCCcccc-ccc-c-------cCCCCCEEECCCC-CCCCChhh
Confidence 23345899999988732 234556789999999987443 322 1 2579999999999 78888889
Q ss_pred ccCCCCCEEeeccCccchhhcccCcccccccccCCCCCCcccceecccccccCcccCCCCCCCCccceeeeccCcCCCCC
Q 007687 471 VFAPNLESIEVLGCVAMEEMVSVGKFAAVPEVTANLNPFAKLQYLDLVGAINLKSIYWMPLSFPLLKYLRAMNCHKLKKL 550 (593)
Q Consensus 471 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~L~~L~i~~C~~L~~l 550 (593)
+.+++|++|++++|......+. .+..+++|+.|+++++ .+..++.....+|+|+.|++++| .+..+
T Consensus 251 ~~l~~L~~L~Ls~N~l~~~~~~------------~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i 316 (597)
T 3oja_B 251 LNYPGLVEVDLSYNELEKIMYH------------PFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHV 316 (597)
T ss_dssp GGCTTCSEEECCSSCCCEEESG------------GGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSS-CCCCC
T ss_pred ccCCCCCEEECCCCccCCCCHH------------HhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCC-CCCcc
Confidence 9999999999999864433222 5678999999999995 78888887778999999999998 56688
Q ss_pred CCCCCcc-cccceEEeccc
Q 007687 551 PFDSNSA-RERNIVISGYT 568 (593)
Q Consensus 551 P~~~~~~-~l~~l~I~~~~ 568 (593)
|...... +|+.+.+.++.
T Consensus 317 ~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 317 ERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp GGGHHHHTTCSEEECCSSC
T ss_pred CcccccCCCCCEEECCCCC
Confidence 8776555 78999988764
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=1.8e-23 Score=223.92 Aligned_cols=123 Identities=20% Similarity=0.255 Sum_probs=111.0
Q ss_pred eEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcC-CcccCCCCCCcEeeCCCCcC
Q 007687 217 RRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTEL-PVGISDLVSLQHLDLSESDI 295 (593)
Q Consensus 217 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~i 295 (593)
++++++++.++.+|.... ++|++|++++|.++.+++..|.++++|++|+|++|.++.+ |..++++++|++|++++|.+
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 81 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCC
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCce
Confidence 689999999999987533 8999999999999999987799999999999999999987 78999999999999999999
Q ss_pred cccchhhhccccCceeeccccccccc--cchhhcCCCccCceeeccCCCCC
Q 007687 296 SELPGELKALVNLKCLNLEWTRNLIT--IPRQLISNLSRLHVLRMFGASHN 344 (593)
Q Consensus 296 ~~lp~~i~~L~~L~~L~l~~~~~l~~--lp~~~i~~l~~L~~L~l~~~~~~ 344 (593)
+.+|.. .+++|++|++++| .+.. +|.. ++++++|++|++.++...
T Consensus 82 ~~lp~~--~l~~L~~L~L~~N-~l~~~~~p~~-~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 82 VKISCH--PTVNLKHLDLSFN-AFDALPICKE-FGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp CEEECC--CCCCCSEEECCSS-CCSSCCCCGG-GGGCTTCCEEEEEESSCC
T ss_pred eecCcc--ccCCccEEeccCC-ccccccchhh-hccCCcceEEEecCcccc
Confidence 999987 8999999999999 4554 5665 999999999999998764
No 25
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.91 E-value=3e-23 Score=224.94 Aligned_cols=348 Identities=19% Similarity=0.169 Sum_probs=196.4
Q ss_pred cEEEEcCCcceecC--CCCCCcceeEEEeeccCcccccc--cccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCC
Q 007687 195 NFLVYAGVGLTEAP--EVKGWENVRRISLMDNQITNLSE--VATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHA 270 (593)
Q Consensus 195 ~~~~~~~~~~~~~~--~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~ 270 (593)
..+.+.++.++.++ .+..++++++|++++|.+..++. +..+++|++|++++|.++.+++..|.++++|++|++++|
T Consensus 31 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 110 (570)
T 2z63_A 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110 (570)
T ss_dssp CEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccc
Confidence 44566666666554 45666777777777777777654 266777777777777777777666777777777777777
Q ss_pred CCCcCCc-ccCCCCCCcEeeCCCCcCcc--cchhhhccccCceeeccccccccccch-----------------------
Q 007687 271 ELTELPV-GISDLVSLQHLDLSESDISE--LPGELKALVNLKCLNLEWTRNLITIPR----------------------- 324 (593)
Q Consensus 271 ~l~~lp~-~i~~L~~L~~L~L~~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~----------------------- 324 (593)
.++.+|. .++++++|++|++++|.++. +|..++++++|++|++++|. +..++.
T Consensus 111 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~~~~~L~l~~n~l 189 (570)
T 2z63_A 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189 (570)
T ss_dssp CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTCTTCCCEEECTTCCC
T ss_pred ccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhccchhhhhcccCCCCc
Confidence 7776654 57777777777777777664 56777777777777776662 221111
Q ss_pred --------------------------------------------------------------------------------
Q 007687 325 -------------------------------------------------------------------------------- 324 (593)
Q Consensus 325 -------------------------------------------------------------------------------- 324 (593)
T Consensus 190 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~ 269 (570)
T 2z63_A 190 NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 269 (570)
T ss_dssp CEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTE
T ss_pred eecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchh
Confidence
Q ss_pred ------hhcCCCccCceeeccCCCCCCCCCCCc---ccc--ccCCcccchhhhcCCCCCceEEEEecCccchhhhhhccc
Q 007687 325 ------QLISNLSRLHVLRMFGASHNAFDGASE---DSI--LFGGGALIVEELLGLKYLEVISFTLRSSHGLQSVLSSHK 393 (593)
Q Consensus 325 ------~~i~~l~~L~~L~l~~~~~~~~~~~~~---~~~--~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~ 393 (593)
..++.+++|++|++.++....++..+. ... +....-..+.. ..+++|+.|.+..+........ .
T Consensus 270 ~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~-~~l~~L~~L~l~~n~~~~~~~~----~ 344 (570)
T 2z63_A 270 YLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT-LKLKSLKRLTFTSNKGGNAFSE----V 344 (570)
T ss_dssp EESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCB-CBCSSCCEEEEESCBSCCBCCC----C
T ss_pred hhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCc-ccccccCEEeCcCCcccccccc----c
Confidence 113345677888887776543222110 000 00000000111 2345555555554332211100 2
Q ss_pred ccccceEEEecccCCCceee--ecc-----------------------ccccccccceeeccccccceeeeccCCccccc
Q 007687 394 LRCCTRALLLQCFNDSTSLE--VSA-----------------------LADLKQLNRLRIAECKKLEELKMDYTGEVQQF 448 (593)
Q Consensus 394 ~~~~L~~L~l~~~~~~~~~~--~~~-----------------------l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~ 448 (593)
..++|+.|+++++.- .... ... +..+++|++|++.+|......+.... .
T Consensus 345 ~~~~L~~L~l~~n~l-~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~ 418 (570)
T 2z63_A 345 DLPSLEFLDLSRNGL-SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF-----L 418 (570)
T ss_dssp BCTTCCEEECCSSCC-BEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTT-----T
T ss_pred cCCCCCEEeCcCCcc-CccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhh-----h
Confidence 233555555554421 1111 122 34444455555544432221000111 1
Q ss_pred CCCCccEEEEeCCCCCCCCc-ccccCCCCCEEeeccCccchhhcccCcccccccccCCCCCCcccceecccccccCccc-
Q 007687 449 VFHSLKKVEIVNSYKLKDLT-FLVFAPNLESIEVLGCVAMEEMVSVGKFAAVPEVTANLNPFAKLQYLDLVGAINLKSI- 526 (593)
Q Consensus 449 ~l~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l- 526 (593)
.+++|+.|++++|......+ .++.+++|++|++++|..... .++..+..+++|+.|++++| .+..+
T Consensus 419 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------~~p~~~~~l~~L~~L~l~~n-~l~~~~ 486 (570)
T 2z63_A 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN-----------FLPDIFTELRNLTFLDLSQC-QLEQLS 486 (570)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG-----------EECSCCTTCTTCCEEECTTS-CCCEEC
T ss_pred cCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccc-----------cchhhhhcccCCCEEECCCC-ccccCC
Confidence 25566666666662222222 255566666666666643211 12236778899999999997 45555
Q ss_pred CCCCCCCCccceeeeccCcCCCCCCCC-CCcc-cccceEEecc
Q 007687 527 YWMPLSFPLLKYLRAMNCHKLKKLPFD-SNSA-RERNIVISGY 567 (593)
Q Consensus 527 ~~~~~~~~~L~~L~i~~C~~L~~lP~~-~~~~-~l~~l~I~~~ 567 (593)
+.....+++|++|++++| +++.+|.. +... +|+.+.+.++
T Consensus 487 ~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 487 PTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred hhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCC
Confidence 555667899999999998 67777654 4555 7899998764
No 26
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=1.5e-23 Score=219.49 Aligned_cols=118 Identities=19% Similarity=0.260 Sum_probs=66.0
Q ss_pred cceeEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCcccCCCCCCcEeeCCCC
Q 007687 214 ENVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISDLVSLQHLDLSES 293 (593)
Q Consensus 214 ~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~ 293 (593)
+++++|++++|.+.++|....+++|++|++++|.++.++ ++.+++|++|++++|.++.+| ++++++|++|++++|
T Consensus 42 ~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N 116 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTN 116 (457)
T ss_dssp TTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSS
T ss_pred CCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCC
Confidence 455555555555555554455555666666555555553 455555666666655555553 555555666666555
Q ss_pred cCcccchhhhccccCceeeccccccccccchhhcCCCccCceeeccCCC
Q 007687 294 DISELPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGAS 342 (593)
Q Consensus 294 ~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 342 (593)
.++.+| ++.+++|++|++++| .++.+| ++.+++|++|++.++.
T Consensus 117 ~l~~l~--~~~l~~L~~L~l~~N-~l~~l~---l~~l~~L~~L~l~~n~ 159 (457)
T 3bz5_A 117 KLTKLD--VSQNPLLTYLNCARN-TLTEID---VSHNTQLTELDCHLNK 159 (457)
T ss_dssp CCSCCC--CTTCTTCCEEECTTS-CCSCCC---CTTCTTCCEEECTTCS
T ss_pred cCCeec--CCCCCcCCEEECCCC-ccceec---cccCCcCCEEECCCCC
Confidence 555554 555555566665555 344442 4555555555555553
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.90 E-value=7.9e-23 Score=220.93 Aligned_cols=328 Identities=15% Similarity=0.164 Sum_probs=212.6
Q ss_pred cceeEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcC-CcccCCCCCCcEeeCCC
Q 007687 214 ENVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTEL-PVGISDLVSLQHLDLSE 292 (593)
Q Consensus 214 ~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~ 292 (593)
...++++++++.++.+|... .++|++|++++|.++.+++..|.++++|++|+|++|.++.+ |..++++++|++|++++
T Consensus 31 ~~~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 31 ELESMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp --CCEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCCcEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 45589999999999988753 38999999999999999987799999999999999999987 67899999999999999
Q ss_pred CcCcccchhhhccccCceeeccccccccccc--hhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccchhhhcCCC
Q 007687 293 SDISELPGELKALVNLKCLNLEWTRNLITIP--RQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELLGLK 370 (593)
Q Consensus 293 ~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp--~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ 370 (593)
|.++.+|.. .+++|++|++++| .+..+| .. ++++++|++|++.++... ...+..+..+
T Consensus 110 N~l~~lp~~--~l~~L~~L~Ls~N-~l~~l~~p~~-~~~l~~L~~L~L~~n~l~---------------~~~~~~l~~L- 169 (562)
T 3a79_B 110 NRLQNISCC--PMASLRHLDLSFN-DFDVLPVCKE-FGNLTKLTFLGLSAAKFR---------------QLDLLPVAHL- 169 (562)
T ss_dssp SCCCEECSC--CCTTCSEEECCSS-CCSBCCCCGG-GGGCTTCCEEEEECSBCC---------------TTTTGGGTTS-
T ss_pred CcCCccCcc--ccccCCEEECCCC-CccccCchHh-hcccCcccEEecCCCccc---------------cCchhhhhhc-
Confidence 999999987 8999999999999 566654 44 999999999999988763 1223334444
Q ss_pred CCceEEEEecCc--cch-hhhhhc-----------------------ccccccceEEEecccCC----------------
Q 007687 371 YLEVISFTLRSS--HGL-QSVLSS-----------------------HKLRCCTRALLLQCFND---------------- 408 (593)
Q Consensus 371 ~L~~L~i~~~~~--~~~-~~~~~~-----------------------~~~~~~L~~L~l~~~~~---------------- 408 (593)
+|+.|.++.+.. ... +..+.. .....+|+.|+++++..
T Consensus 170 ~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~ 249 (562)
T 3a79_B 170 HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGP 249 (562)
T ss_dssp CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCS
T ss_pred eeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccC
Confidence 447777776544 111 000000 01123555555554310
Q ss_pred -Cceeeec-------------cccccccccceeeccccccceeeeccC----Cc--------------------------
Q 007687 409 -STSLEVS-------------ALADLKQLNRLRIAECKKLEELKMDYT----GE-------------------------- 444 (593)
Q Consensus 409 -~~~~~~~-------------~l~~l~~L~~L~l~~~~~~~~l~~~~~----~~-------------------------- 444 (593)
...+.+. .....++|++|++++|.....++.... ..
T Consensus 250 ~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~ 329 (562)
T 3a79_B 250 TLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFA 329 (562)
T ss_dssp SCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHH
T ss_pred cceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhc
Confidence 0000000 000112677777766653322221110 00
Q ss_pred ----------------cc-ccCCCCccEEEEeCCCCCCC-C-cccccCCCCCEEeeccCccch--hhcc-cCccccc---
Q 007687 445 ----------------VQ-QFVFHSLKKVEIVNSYKLKD-L-TFLVFAPNLESIEVLGCVAME--EMVS-VGKFAAV--- 499 (593)
Q Consensus 445 ----------------~~-~~~l~~L~~L~l~~c~~l~~-l-~~l~~l~~L~~L~l~~c~~l~--~~~~-~~~~~~~--- 499 (593)
.. ...+++|+.|+++++ .++. . ..++.+++|++|++++|..-. .++. ......+
T Consensus 330 ~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L 408 (562)
T 3a79_B 330 EMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQN-VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETL 408 (562)
T ss_dssp TCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSS-CCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEE
T ss_pred cCcceEEEccCCCcccccCccCCCCceEEECCCC-ccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEE
Confidence 00 035789999999999 5555 3 348899999999999985432 1111 0000000
Q ss_pred -------cc-ccC-CCCCCcccceecccccccCcccCCCCCCC-CccceeeeccCcCCCCCCCCCCcc-cccceEEecc
Q 007687 500 -------PE-VTA-NLNPFAKLQYLDLVGAINLKSIYWMPLSF-PLLKYLRAMNCHKLKKLPFDSNSA-RERNIVISGY 567 (593)
Q Consensus 500 -------~~-~~~-~~~~~~~L~~L~l~~c~~L~~l~~~~~~~-~~L~~L~i~~C~~L~~lP~~~~~~-~l~~l~I~~~ 567 (593)
.. ++. ....+++|+.|+++++.--..++. .+ ++|++|++++| +++.+|...... +|+.+.+.++
T Consensus 409 ~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N 483 (562)
T 3a79_B 409 DVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR---CLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN 483 (562)
T ss_dssp ECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGS---SCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS
T ss_pred ECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhh---hhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC
Confidence 01 111 233455666666665432122221 23 68999999888 788898876665 7888888765
No 28
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.90 E-value=9.3e-23 Score=225.78 Aligned_cols=148 Identities=23% Similarity=0.297 Sum_probs=128.3
Q ss_pred cEEEEcCCcceecCCCCCCcceeEEEeeccCcccccc--cccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCC
Q 007687 195 NFLVYAGVGLTEAPEVKGWENVRRISLMDNQITNLSE--VATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAEL 272 (593)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l 272 (593)
..+.+.+..++.+|.... +++++|++++|.+..++. +..+++|++|++++|.++.+++..|.++++|++|+|++|.+
T Consensus 7 ~~~~cs~~~L~~ip~~~~-~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 85 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP-TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85 (680)
T ss_dssp SEEECCSSCCSSCCSCSC-TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC
T ss_pred CeeECCCCCccccccccC-CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc
Confidence 467777888888886433 799999999999998876 48899999999999999999888899999999999999999
Q ss_pred CcCCc-ccCCCCCCcEeeCCCCcCcccc-hhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCC
Q 007687 273 TELPV-GISDLVSLQHLDLSESDISELP-GELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHN 344 (593)
Q Consensus 273 ~~lp~-~i~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 344 (593)
+.+|. .|+++++|++|++++|.++.+| ..++++++|++|++++| .+..++.+.++++++|++|++.++...
T Consensus 86 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~ 158 (680)
T 1ziw_A 86 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQ 158 (680)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECCSSCCC
T ss_pred CccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCC-cccccCchhhcccccCCEEEccCCccc
Confidence 99987 6999999999999999999887 57899999999999999 455555444889999999999988654
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.90 E-value=1.3e-22 Score=229.36 Aligned_cols=341 Identities=19% Similarity=0.175 Sum_probs=209.7
Q ss_pred CcEEEEcCCcceecCCCCCCcceeEEEeeccCcccccc--cccCCcccEEEccCcc-CcccchhhhccCCCCcEEEcCCC
Q 007687 194 ENFLVYAGVGLTEAPEVKGWENVRRISLMDNQITNLSE--VATCRHLLTLFLNQNK-LQMIHNDFFRFMPSLKVLNLSHA 270 (593)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~-l~~~~~~~~~~l~~Lr~L~L~~~ 270 (593)
...+.+.+..++.+|. ..+++++|++++|.+..+.. +..+++|++|++++|. ...+++..|.++++|++|+|++|
T Consensus 6 ~~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 6 GRIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp TEEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred ceEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 3567788888999998 55899999999999998754 3899999999999995 66776667999999999999999
Q ss_pred CCCcC-CcccCCCCCCcEeeCCCCcCcc-cchh--hhccccCceeecccccccccc-chhhcCCCccCceeeccCCCCCC
Q 007687 271 ELTEL-PVGISDLVSLQHLDLSESDISE-LPGE--LKALVNLKCLNLEWTRNLITI-PRQLISNLSRLHVLRMFGASHNA 345 (593)
Q Consensus 271 ~l~~l-p~~i~~L~~L~~L~L~~~~i~~-lp~~--i~~L~~L~~L~l~~~~~l~~l-p~~~i~~l~~L~~L~l~~~~~~~ 345 (593)
.+..+ |..++++++|++|++++|.++. +|.. ++++++|++|++++|. +..+ |...++++++|++|++.++....
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCe
Confidence 99977 8899999999999999999985 5655 8999999999999994 5444 33348999999999999987642
Q ss_pred CCC-C--------CccccccCC--cccchhhhcCCC------CCceEEEEecCccc--hhhhhhccc-------------
Q 007687 346 FDG-A--------SEDSILFGG--GALIVEELLGLK------YLEVISFTLRSSHG--LQSVLSSHK------------- 393 (593)
Q Consensus 346 ~~~-~--------~~~~~~~~~--~~~~~~~L~~l~------~L~~L~i~~~~~~~--~~~~~~~~~------------- 393 (593)
... . +..-.+... .......++.+. .|+.|+++.+.... ...+.....
T Consensus 163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~ 242 (844)
T 3j0a_A 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242 (844)
T ss_dssp CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence 110 0 000000000 001111112211 26666665442211 000000000
Q ss_pred ---------------------ccccceEEEecccCCCceeeeccccccccccceeeccccccceeeeccCCcccccCCCC
Q 007687 394 ---------------------LRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIAECKKLEELKMDYTGEVQQFVFHS 452 (593)
Q Consensus 394 ---------------------~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~l~~ 452 (593)
...+|+.|+++++. ........+..+++|+.|++++|.... +.+.... .+++
T Consensus 243 ~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~-----~l~~ 315 (844)
T 3j0a_A 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF-VFSLNSRVFETLKDLKVLNLAYNKINK-IADEAFY-----GLDN 315 (844)
T ss_dssp CBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCC-CCEECSCCSSSCCCCCEEEEESCCCCE-ECTTTTT-----TCSS
T ss_pred ccccccccccCCCChhhhhccccCCccEEECCCCc-ccccChhhhhcCCCCCEEECCCCcCCC-CChHHhc-----CCCC
Confidence 01345555555543 222222445556666666666554322 2233322 2566
Q ss_pred ccEEEEeCCCCCCCCc--ccccCCCCCEEeeccCccchhhcccCcccccccccCCCCCCcccceecccccccCcccCCCC
Q 007687 453 LKKVEIVNSYKLKDLT--FLVFAPNLESIEVLGCVAMEEMVSVGKFAAVPEVTANLNPFAKLQYLDLVGAINLKSIYWMP 530 (593)
Q Consensus 453 L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~ 530 (593)
|+.|+++++ .++.+. .++.+++|++|++++|. +..+.. ..+..+++|+.|+++++ .++.++.
T Consensus 316 L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~-----------~~~~~l~~L~~L~Ls~N-~l~~i~~-- 379 (844)
T 3j0a_A 316 LQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKNH-IAIIQD-----------QTFKFLEKLQTLDLRDN-ALTTIHF-- 379 (844)
T ss_dssp CCEEEEESC-CCSCCCSCSCSSCTTCCEEECCSCC-CCCCCS-----------SCSCSCCCCCEEEEETC-CSCCCSS--
T ss_pred CCEEECCCC-CCCccCHHHhcCCCCCCEEECCCCC-CCccCh-----------hhhcCCCCCCEEECCCC-CCCcccC--
Confidence 666666666 444432 25566666666666653 222211 13455667777777664 3444332
Q ss_pred CCCCccceeeeccCcCCCCCCCCCCcccccceEEe
Q 007687 531 LSFPLLKYLRAMNCHKLKKLPFDSNSARERNIVIS 565 (593)
Q Consensus 531 ~~~~~L~~L~i~~C~~L~~lP~~~~~~~l~~l~I~ 565 (593)
+++|+.|.+.++ +++.+|.... .++.+.+.
T Consensus 380 --~~~L~~L~l~~N-~l~~l~~~~~--~l~~L~ls 409 (844)
T 3j0a_A 380 --IPSIPDIFLSGN-KLVTLPKINL--TANLIHLS 409 (844)
T ss_dssp --CCSCSEEEEESC-CCCCCCCCCT--TCCEEECC
T ss_pred --CCCcchhccCCC-Cccccccccc--ccceeecc
Confidence 566777777665 4556665432 24555554
No 30
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=5.5e-23 Score=229.03 Aligned_cols=355 Identities=12% Similarity=0.142 Sum_probs=252.1
Q ss_pred CcEEEEcCCccee------------------cCC-CC--CCcceeEEEeeccCcc-ccccc-ccCCcccEEEccCcc-Cc
Q 007687 194 ENFLVYAGVGLTE------------------APE-VK--GWENVRRISLMDNQIT-NLSEV-ATCRHLLTLFLNQNK-LQ 249 (593)
Q Consensus 194 ~~~~~~~~~~~~~------------------~~~-~~--~~~~lr~L~l~~~~~~-~l~~~-~~~~~Lr~L~l~~~~-l~ 249 (593)
-..+.+.++.+.. +|. +. .+++|++|++++|.+. .+|.. ..+++|++|++++|. ++
T Consensus 450 L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ls 529 (876)
T 4ecn_A 450 LQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS 529 (876)
T ss_dssp CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSC
T ss_pred CCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcc
Confidence 4677888888777 775 33 6899999999999754 45654 889999999999998 87
Q ss_pred c--cchhhhccCC-------CCcEEEcCCCCCCcCCc--ccCCCCCCcEeeCCCCcCcccchhhhccccCceeecccccc
Q 007687 250 M--IHNDFFRFMP-------SLKVLNLSHAELTELPV--GISDLVSLQHLDLSESDISELPGELKALVNLKCLNLEWTRN 318 (593)
Q Consensus 250 ~--~~~~~~~~l~-------~Lr~L~L~~~~l~~lp~--~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~ 318 (593)
. +|.. ++.+. +|++|+|++|.++.+|. .++++++|++|++++|.++.+| .++++++|+.|++++| .
T Consensus 530 g~~iP~~-i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N-~ 606 (876)
T 4ecn_A 530 AAQLKAD-WTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYN-Q 606 (876)
T ss_dssp HHHHHHH-HHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSS-C
T ss_pred cccchHH-HHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCC-c
Confidence 5 6665 55554 99999999999999998 8999999999999999999999 8999999999999999 5
Q ss_pred ccccchhhcCCCcc-CceeeccCCCCCCCCCCCccc------cccCCcc-------cchhhhc--CCCCCceEEEEecCc
Q 007687 319 LITIPRQLISNLSR-LHVLRMFGASHNAFDGASEDS------ILFGGGA-------LIVEELL--GLKYLEVISFTLRSS 382 (593)
Q Consensus 319 l~~lp~~~i~~l~~-L~~L~l~~~~~~~~~~~~~~~------~~~~~~~-------~~~~~L~--~l~~L~~L~i~~~~~ 382 (593)
+..+|.. +.++++ |++|++.++....++..+... .+.-... .....+. .+.+|+.|+++.+..
T Consensus 607 l~~lp~~-l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L 685 (876)
T 4ecn_A 607 IEEIPED-FCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI 685 (876)
T ss_dssp CSCCCTT-SCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCC
T ss_pred cccchHH-HhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcC
Confidence 6689987 899999 999999999876444322111 1111000 1111222 334899999998777
Q ss_pred cchhhhhhcccccccceEEEecccCCCceeeeccc-------cccccccceeeccccccceeeeccCCcccccCCCCccE
Q 007687 383 HGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSAL-------ADLKQLNRLRIAECKKLEELKMDYTGEVQQFVFHSLKK 455 (593)
Q Consensus 383 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l-------~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~l~~L~~ 455 (593)
..++.... ...++|+.|+++++. +..++...+ .++++|+.|++++|... .++..+. ...+++|+.
T Consensus 686 ~~lp~~~~--~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~----~~~l~~L~~ 757 (876)
T 4ecn_A 686 QKFPTELF--ATGSPISTIILSNNL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFR----ATTLPYLSN 757 (876)
T ss_dssp CSCCHHHH--HTTCCCSEEECCSCC-CSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGS----TTTCTTCCE
T ss_pred CccCHHHH--ccCCCCCEEECCCCc-CCccChHHhccccccccccCCccEEECCCCCCc-cchHHhh----hccCCCcCE
Confidence 76554322 124589999999884 334442222 23459999999999654 4433332 013899999
Q ss_pred EEEeCCCCCCCCcc-cccCCCCCEEeeccCccchhhcccCcccccccccCCCCCCcccceecccccccCcccCCCCCCCC
Q 007687 456 VEIVNSYKLKDLTF-LVFAPNLESIEVLGCVAMEEMVSVGKFAAVPEVTANLNPFAKLQYLDLVGAINLKSIYWMPLSFP 534 (593)
Q Consensus 456 L~l~~c~~l~~l~~-l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~ 534 (593)
|+|++| .++.+|. ++.+++|+.|+|++|+.+..- .-...++..+..+++|+.|+|++| .+..+|... ++
T Consensus 758 L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N------~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~~l--~~ 827 (876)
T 4ecn_A 758 MDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGN------RILRQWPTGITTCPSLIQLQIGSN-DIRKVDEKL--TP 827 (876)
T ss_dssp EECCSS-CCSSCCCGGGGCTTCCEEECCCCBCTTCC------BCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSCC--CS
T ss_pred EEeCCC-CCCccchhhhcCCCCCEEECCCCCCcccc------cccccChHHHhcCCCCCEEECCCC-CCCccCHhh--cC
Confidence 999999 6777764 889999999999886521110 000123346778999999999997 458888764 38
Q ss_pred ccceeeeccCcCCCCCCC--------CCCcc-cccceEEeccccc
Q 007687 535 LLKYLRAMNCHKLKKLPF--------DSNSA-RERNIVISGYTKW 570 (593)
Q Consensus 535 ~L~~L~i~~C~~L~~lP~--------~~~~~-~l~~l~I~~~~~~ 570 (593)
+|+.|++++|+-..--+. ....+ ..+...|.+|+..
T Consensus 828 ~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~~L 872 (876)
T 4ecn_A 828 QLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDAL 872 (876)
T ss_dssp SSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEEESCGGG
T ss_pred CCCEEECCCCCCCccChHHccccccchheeecCCCccccCCCCCc
Confidence 999999999974332111 11122 2345567788754
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=4.5e-23 Score=217.04 Aligned_cols=336 Identities=14% Similarity=0.140 Sum_probs=234.0
Q ss_pred CcEEEEcCCcceecC--CCCCCcceeEEEeeccCcc-cccc--cccCCcccEEEccCccCcccchhhhccCCCCcEEEcC
Q 007687 194 ENFLVYAGVGLTEAP--EVKGWENVRRISLMDNQIT-NLSE--VATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLS 268 (593)
Q Consensus 194 ~~~~~~~~~~~~~~~--~~~~~~~lr~L~l~~~~~~-~l~~--~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~ 268 (593)
-..+.+.++.+..++ .+..++++++|++++|.+. .++. +..+++|++|++++|.++.+++..|.++++|++|+++
T Consensus 32 l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 111 (455)
T 3v47_A 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLT 111 (455)
T ss_dssp CCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECT
T ss_pred cCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCC
Confidence 466778888777763 4778899999999999886 4443 4889999999999999998876669999999999999
Q ss_pred CCCCCc-CCcc--cCCCCCCcEeeCCCCcCccc-chh-hhccccCceeeccccccccccchhhcCCC--ccCceeeccCC
Q 007687 269 HAELTE-LPVG--ISDLVSLQHLDLSESDISEL-PGE-LKALVNLKCLNLEWTRNLITIPRQLISNL--SRLHVLRMFGA 341 (593)
Q Consensus 269 ~~~l~~-lp~~--i~~L~~L~~L~L~~~~i~~l-p~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l--~~L~~L~l~~~ 341 (593)
+|.++. .|.. ++.+++|++|++++|.++.+ |.. ++++++|++|++++|. +..++...+..+ .+|++|++.++
T Consensus 112 ~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~L~~L~l~~n 190 (455)
T 3v47_A 112 QCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLLRLSSI 190 (455)
T ss_dssp TSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCEEEEEECTTC
T ss_pred CCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccChhhhhccccccccccccccC
Confidence 999985 4444 99999999999999999977 554 8899999999999994 554443335544 45555555554
Q ss_pred CCCCCCCCC-------------ccc--cccCC--cccchh---hhcCCCCCceEEEEecCccch----------hhhhhc
Q 007687 342 SHNAFDGAS-------------EDS--ILFGG--GALIVE---ELLGLKYLEVISFTLRSSHGL----------QSVLSS 391 (593)
Q Consensus 342 ~~~~~~~~~-------------~~~--~~~~~--~~~~~~---~L~~l~~L~~L~i~~~~~~~~----------~~~~~~ 391 (593)
......... ... .+.+. ....+. ......+|+.|.++.+..... ......
T Consensus 191 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 270 (455)
T 3v47_A 191 TLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK 270 (455)
T ss_dssp BCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTG
T ss_pred cccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccc
Confidence 433211100 000 00000 111222 222347777777764321110 000000
Q ss_pred ccccccceEEEecccCCCceeeeccccccccccceeeccccccceeeeccCCcccccCCCCccEEEEeCCCCCCCCc--c
Q 007687 392 HKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIAECKKLEELKMDYTGEVQQFVFHSLKKVEIVNSYKLKDLT--F 469 (593)
Q Consensus 392 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~--~ 469 (593)
.....+|+.|+++++.- .......+..+++|++|++++|.... +.+..+. .+++|+.|++++| .++.++ .
T Consensus 271 ~~~~~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~-----~l~~L~~L~Ls~N-~l~~~~~~~ 342 (455)
T 3v47_A 271 GLEASGVKTCDLSKSKI-FALLKSVFSHFTDLEQLTLAQNEINK-IDDNAFW-----GLTHLLKLNLSQN-FLGSIDSRM 342 (455)
T ss_dssp GGTTSCCCEEECCSSCC-CEECTTTTTTCTTCCEEECTTSCCCE-ECTTTTT-----TCTTCCEEECCSS-CCCEECGGG
T ss_pred cccccCceEEEecCccc-cccchhhcccCCCCCEEECCCCcccc-cChhHhc-----CcccCCEEECCCC-ccCCcChhH
Confidence 01124899999998853 34444678889999999999987544 4454544 3899999999999 666653 3
Q ss_pred cccCCCCCEEeeccCccchhhcccCcccccccccCCCCCCcccceecccccccCcccCCCC-CCCCccceeeeccCcCCC
Q 007687 470 LVFAPNLESIEVLGCVAMEEMVSVGKFAAVPEVTANLNPFAKLQYLDLVGAINLKSIYWMP-LSFPLLKYLRAMNCHKLK 548 (593)
Q Consensus 470 l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~-~~~~~L~~L~i~~C~~L~ 548 (593)
++.+++|++|++++|......+ ..+..+++|++|+++++ .++.++... ..+++|++|++.+++---
T Consensus 343 ~~~l~~L~~L~Ls~N~l~~~~~------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 343 FENLDKLEVLDLSYNHIRALGD------------QSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp GTTCTTCCEEECCSSCCCEECT------------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hcCcccCCEEECCCCcccccCh------------hhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCccc
Confidence 7889999999999995432212 25678999999999995 677777654 578999999999876554
Q ss_pred CCC
Q 007687 549 KLP 551 (593)
Q Consensus 549 ~lP 551 (593)
..|
T Consensus 410 ~~~ 412 (455)
T 3v47_A 410 SCP 412 (455)
T ss_dssp CTT
T ss_pred CCC
Confidence 444
No 32
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=6.6e-23 Score=221.12 Aligned_cols=148 Identities=19% Similarity=0.231 Sum_probs=123.6
Q ss_pred CcEEEEcCCcceecC--CCCCCcceeEEEeeccCcccccc--cccCCcccEEEccCccCcccchhhhccCCCCcEEEcCC
Q 007687 194 ENFLVYAGVGLTEAP--EVKGWENVRRISLMDNQITNLSE--VATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSH 269 (593)
Q Consensus 194 ~~~~~~~~~~~~~~~--~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~ 269 (593)
-..+.+.++.+..++ .+..++++++|++++|.+..++. +..+++|++|++++|.++.+++..|+++++|++|++++
T Consensus 28 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 107 (549)
T 2z81_A 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG 107 (549)
T ss_dssp CCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTT
T ss_pred ccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCC
Confidence 456777777777664 47788999999999999998875 48899999999999999999998899999999999999
Q ss_pred CCCCc--CCcccCCCCCCcEeeCCCCc-Ccccc-hhhhccccCceeeccccccccccchhhcCCCccCceeeccCCC
Q 007687 270 AELTE--LPVGISDLVSLQHLDLSESD-ISELP-GELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGAS 342 (593)
Q Consensus 270 ~~l~~--lp~~i~~L~~L~~L~L~~~~-i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 342 (593)
|.++. .|..++++++|++|++++|. +..+| ..++++++|++|++++|......|.. ++.+++|++|++.++.
T Consensus 108 n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 108 NPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIHHLTLHLSE 183 (549)
T ss_dssp CCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEEEECSB
T ss_pred CcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhccccCceEecccCc
Confidence 99985 46789999999999999997 77887 57899999999999999543445554 7777777777766554
No 33
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.90 E-value=4.2e-23 Score=207.72 Aligned_cols=293 Identities=16% Similarity=0.149 Sum_probs=207.3
Q ss_pred ceeEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcC-CcccCCCCCCcEeeCCCC
Q 007687 215 NVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTEL-PVGISDLVSLQHLDLSES 293 (593)
Q Consensus 215 ~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~ 293 (593)
+++.++++++.+..+|... .++|++|++++|.++.+++..|.++++|++|++++|.++.+ |..++++++|++|++++|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 6888999999888887643 46899999999999988876789999999999999999877 778999999999999999
Q ss_pred cCcccchhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccchhhhcCCCCCc
Q 007687 294 DISELPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELLGLKYLE 373 (593)
Q Consensus 294 ~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~ 373 (593)
.++.+|..+. ++|++|++++| .+..+|...++++++|++|++.++.... .......+..+ +|+
T Consensus 113 ~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~~~l-~L~ 175 (332)
T 2ft3_A 113 HLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLEN-------------SGFEPGAFDGL-KLN 175 (332)
T ss_dssp CCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBG-------------GGSCTTSSCSC-CCS
T ss_pred cCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCcccc-------------CCCCcccccCC-ccC
Confidence 9999998765 89999999999 6778887768999999999999887530 11233445555 778
Q ss_pred eEEEEecCccchhhhhhcccccccceEEEecccCCCceeeeccccccccccceeeccccccceeeeccCCcccccCCCCc
Q 007687 374 VISFTLRSSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIAECKKLEELKMDYTGEVQQFVFHSL 453 (593)
Q Consensus 374 ~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~l~~L 453 (593)
.|+++.+....++.. ..++|+.|+++++. ........+..+++|++|++++|.... +.+.+.. .+++|
T Consensus 176 ~L~l~~n~l~~l~~~-----~~~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~L~~N~l~~-~~~~~~~-----~l~~L 243 (332)
T 2ft3_A 176 YLRISEAKLTGIPKD-----LPETLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHNQIRM-IENGSLS-----FLPTL 243 (332)
T ss_dssp CCBCCSSBCSSCCSS-----SCSSCSCCBCCSSC-CCCCCTTSSTTCTTCSCCBCCSSCCCC-CCTTGGG-----GCTTC
T ss_pred EEECcCCCCCccCcc-----ccCCCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCCc-CChhHhh-----CCCCC
Confidence 888876665554332 22578888888774 333443567788889999998876433 3333333 37888
Q ss_pred cEEEEeCCCCCCCCcc-cccCCCCCEEeeccCccchhhcccCcccccccccCCCCCCcccceecccccccCcccC---CC
Q 007687 454 KKVEIVNSYKLKDLTF-LVFAPNLESIEVLGCVAMEEMVSVGKFAAVPEVTANLNPFAKLQYLDLVGAINLKSIY---WM 529 (593)
Q Consensus 454 ~~L~l~~c~~l~~l~~-l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~---~~ 529 (593)
+.|++++| .++.+|. ++.+++|++|++++|. ++.+....+... .....+++|+.|++.+++ +..+. ..
T Consensus 244 ~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~-----~~~~~~~~l~~L~l~~N~-~~~~~~~~~~ 315 (332)
T 2ft3_A 244 RELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPV-----GFGVKRAYYNGISLFNNP-VPYWEVQPAT 315 (332)
T ss_dssp CEEECCSS-CCCBCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCS-----SCCSSSCCBSEEECCSSS-SCGGGSCGGG
T ss_pred CEEECCCC-cCeecChhhhcCccCCEEECCCCC-CCccChhHcccc-----ccccccccccceEeecCc-ccccccCccc
Confidence 99999888 6667664 7888889999888874 333322111110 011226778888888765 33221 22
Q ss_pred CCCCCccceeeeccCc
Q 007687 530 PLSFPLLKYLRAMNCH 545 (593)
Q Consensus 530 ~~~~~~L~~L~i~~C~ 545 (593)
...+++|+.+++.++.
T Consensus 316 ~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 316 FRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GTTBCCSTTEEC----
T ss_pred ccccchhhhhhccccc
Confidence 3346677777777654
No 34
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.90 E-value=2.3e-22 Score=202.19 Aligned_cols=294 Identities=16% Similarity=0.169 Sum_probs=215.7
Q ss_pred cceeEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcC-CcccCCCCCCcEeeCCC
Q 007687 214 ENVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTEL-PVGISDLVSLQHLDLSE 292 (593)
Q Consensus 214 ~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~ 292 (593)
.+++.++++++.+..+|... .++|++|++++|.++.+++..|.++++|++|++++|.++.+ |..++.+++|++|++++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp EETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCCeEEEecCCCccccCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 37888999988888887642 36899999999999999887789999999999999999977 78899999999999999
Q ss_pred CcCcccchhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccchhhhcCCCCC
Q 007687 293 SDISELPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELLGLKYL 372 (593)
Q Consensus 293 ~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L 372 (593)
|.++.+|..+. ++|++|++++| .+..++...++++++|++|++.++.... .......+..+++|
T Consensus 110 n~l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~~~l~~L 173 (330)
T 1xku_A 110 NQLKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKS-------------SGIENGAFQGMKKL 173 (330)
T ss_dssp SCCSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCG-------------GGBCTTGGGGCTTC
T ss_pred CcCCccChhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCc-------------cCcChhhccCCCCc
Confidence 99999998765 79999999999 6777777668999999999999887530 12345567888999
Q ss_pred ceEEEEecCccchhhhhhcccccccceEEEecccCCCceeeeccccccccccceeeccccccceeeeccCCcccccCCCC
Q 007687 373 EVISFTLRSSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIAECKKLEELKMDYTGEVQQFVFHS 452 (593)
Q Consensus 373 ~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~l~~ 452 (593)
+.|.++.+....++.. ...+|+.|+++++. ........+..+++|++|++++|.... +.+.+.. .+++
T Consensus 174 ~~L~l~~n~l~~l~~~-----~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~-----~l~~ 241 (330)
T 1xku_A 174 SYIRIADTNITTIPQG-----LPPSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNSISA-VDNGSLA-----NTPH 241 (330)
T ss_dssp CEEECCSSCCCSCCSS-----CCTTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSSCCCE-ECTTTGG-----GSTT
T ss_pred CEEECCCCccccCCcc-----ccccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCce-eChhhcc-----CCCC
Confidence 9999987766554432 22588999998874 444444677888999999999886443 3443443 3788
Q ss_pred ccEEEEeCCCCCCCCcc-cccCCCCCEEeeccCccchhhcccCcccccccccCCCCCCcccceecccccccCcccCCCC-
Q 007687 453 LKKVEIVNSYKLKDLTF-LVFAPNLESIEVLGCVAMEEMVSVGKFAAVPEVTANLNPFAKLQYLDLVGAINLKSIYWMP- 530 (593)
Q Consensus 453 L~~L~l~~c~~l~~l~~-l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~- 530 (593)
|+.|++++| .++.+|. +..+++|++|++++|. ++.+....++.. .....+++|+.|++.+.+ +..+...+
T Consensus 242 L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~-----~~~~~~~~l~~l~l~~N~-~~~~~i~~~ 313 (330)
T 1xku_A 242 LRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPP-----GYNTKKASYSGVSLFSNP-VQYWEIQPS 313 (330)
T ss_dssp CCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCS-----SCCTTSCCCSEEECCSSS-SCGGGSCGG
T ss_pred CCEEECCCC-cCccCChhhccCCCcCEEECCCCc-CCccChhhcCCc-----ccccccccccceEeecCc-ccccccCcc
Confidence 999999998 6667654 7888999999999884 334333211111 011235788888888754 33333222
Q ss_pred --CCCCccceeeeccC
Q 007687 531 --LSFPLLKYLRAMNC 544 (593)
Q Consensus 531 --~~~~~L~~L~i~~C 544 (593)
..+++|+.++++++
T Consensus 314 ~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 314 TFRCVYVRAAVQLGNY 329 (330)
T ss_dssp GGTTCCCGGGEEC---
T ss_pred ccccccceeEEEeccc
Confidence 23566677766654
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=1.5e-22 Score=214.23 Aligned_cols=289 Identities=20% Similarity=0.230 Sum_probs=227.4
Q ss_pred CcEEEEcCCcceecC--CCCCCcceeEEEeeccCcccccc--cccCCcccEEEccCccCcccchhhhccCCCCcEEEcCC
Q 007687 194 ENFLVYAGVGLTEAP--EVKGWENVRRISLMDNQITNLSE--VATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSH 269 (593)
Q Consensus 194 ~~~~~~~~~~~~~~~--~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~ 269 (593)
-..+.+.++.+..++ .+..+++|++|++++|.+..+.. +..+++|++|++++|.++.++...|.++++|++|+|++
T Consensus 34 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 113 (477)
T 2id5_A 34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISE 113 (477)
T ss_dssp CSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTT
T ss_pred CcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCC
Confidence 356777888877774 47788999999999999998743 38899999999999999999988889999999999999
Q ss_pred CCCCcC-CcccCCCCCCcEeeCCCCcCcccc-hhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCC
Q 007687 270 AELTEL-PVGISDLVSLQHLDLSESDISELP-GELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFD 347 (593)
Q Consensus 270 ~~l~~l-p~~i~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~ 347 (593)
|.+..+ |..+..+++|++|++++|.++.++ ..+..+++|++|++++| .+..+|...+.++++|++|++.++...
T Consensus 114 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~i~--- 189 (477)
T 2id5_A 114 NKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNIN--- 189 (477)
T ss_dssp SCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEESCCCC---
T ss_pred CccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCCCcCc---
Confidence 999976 668999999999999999998764 57899999999999999 688888777999999999999988763
Q ss_pred CCCccccccCCcccchhhhcCCCCCceEEEEecCc-cchhhhhhcccccccceEEEecccCCCceeeeccccccccccce
Q 007687 348 GASEDSILFGGGALIVEELLGLKYLEVISFTLRSS-HGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRL 426 (593)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L 426 (593)
......+..+++|+.|+++.+.. ..++. ......+|+.|+++++. +..++...+..+++|++|
T Consensus 190 ------------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L 253 (477)
T 2id5_A 190 ------------AIRDYSFKRLYRLKVLEISHWPYLDTMTP---NCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFL 253 (477)
T ss_dssp ------------EECTTCSCSCTTCCEEEEECCTTCCEECT---TTTTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEE
T ss_pred ------------EeChhhcccCcccceeeCCCCccccccCc---ccccCccccEEECcCCc-ccccCHHHhcCccccCee
Confidence 23344577889999999986432 11111 11112389999999884 445554567888999999
Q ss_pred eeccccccceeeeccCCcccccCCCCccEEEEeCCCCCCCCc--ccccCCCCCEEeeccCccchhhcccCcccccccccC
Q 007687 427 RIAECKKLEELKMDYTGEVQQFVFHSLKKVEIVNSYKLKDLT--FLVFAPNLESIEVLGCVAMEEMVSVGKFAAVPEVTA 504 (593)
Q Consensus 427 ~l~~~~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 504 (593)
++++|... .+.+..+. .+++|+.|+++++ .++.+. .+..+++|++|+|++|. ++.++. .
T Consensus 254 ~Ls~n~l~-~~~~~~~~-----~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-----------~ 314 (477)
T 2id5_A 254 NLSYNPIS-TIEGSMLH-----ELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEE-----------S 314 (477)
T ss_dssp ECCSSCCC-EECTTSCT-----TCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSSC-CSCCCG-----------G
T ss_pred ECCCCcCC-ccChhhcc-----ccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCCc-CceeCH-----------h
Confidence 99988743 44444444 3889999999998 566653 37889999999999984 333322 1
Q ss_pred CCCCCcccceecccccc
Q 007687 505 NLNPFAKLQYLDLVGAI 521 (593)
Q Consensus 505 ~~~~~~~L~~L~l~~c~ 521 (593)
.+..+++|+.|++++++
T Consensus 315 ~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 315 VFHSVGNLETLILDSNP 331 (477)
T ss_dssp GBSCGGGCCEEECCSSC
T ss_pred HcCCCcccCEEEccCCC
Confidence 34678899999998753
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=2.2e-22 Score=210.67 Aligned_cols=296 Identities=17% Similarity=0.186 Sum_probs=226.8
Q ss_pred CcEEEEcCCcceecCCCCCCcceeEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCC
Q 007687 194 ENFLVYAGVGLTEAPEVKGWENVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELT 273 (593)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~ 273 (593)
-..+.+.++.+..+|.+..++++++|++++|.+..++ ...+++|++|++++|.++.++ ++.+++|++|++++|.++
T Consensus 44 L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N~l~ 119 (457)
T 3bz5_A 44 LTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLT 119 (457)
T ss_dssp CCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSSCCS
T ss_pred CCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCCcCC
Confidence 4567888888888888888899999999999999986 788999999999999999885 789999999999999999
Q ss_pred cCCcccCCCCCCcEeeCCCCcCcccchhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccc
Q 007687 274 ELPVGISDLVSLQHLDLSESDISELPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDS 353 (593)
Q Consensus 274 ~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~ 353 (593)
.+| ++.+++|++|++++|.++.+| ++.+++|++|++++|..++.++ ++.+++|++|++.++...
T Consensus 120 ~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~--------- 183 (457)
T 3bz5_A 120 KLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKIT--------- 183 (457)
T ss_dssp CCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCC---------
T ss_pred eec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccc---------
Confidence 986 899999999999999999886 8899999999999997777773 789999999999998764
Q ss_pred cccCCcccchhhhcCCCCCceEEEEecCccchhhhhhcccccccceEEEecccCCCceeeeccccccccccceeeccccc
Q 007687 354 ILFGGGALIVEELLGLKYLEVISFTLRSSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIAECKK 433 (593)
Q Consensus 354 ~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 433 (593)
. +. ++.+++|+.|.++.+....++ ....++|+.|+++++.- ..++ +..+++|+.|++++|..
T Consensus 184 -----~---l~-l~~l~~L~~L~l~~N~l~~~~-----l~~l~~L~~L~Ls~N~l-~~ip---~~~l~~L~~L~l~~N~l 245 (457)
T 3bz5_A 184 -----E---LD-VSQNKLLNRLNCDTNNITKLD-----LNQNIQLTFLDCSSNKL-TEID---VTPLTQLTYFDCSVNPL 245 (457)
T ss_dssp -----C---CC-CTTCTTCCEEECCSSCCSCCC-----CTTCTTCSEEECCSSCC-SCCC---CTTCTTCSEEECCSSCC
T ss_pred -----e---ec-cccCCCCCEEECcCCcCCeec-----cccCCCCCEEECcCCcc-cccC---ccccCCCCEEEeeCCcC
Confidence 2 11 677888999998877666542 23346899999998853 3343 67788999999998864
Q ss_pred cceeeeccCCcccccCCCCccEEE----------EeCCCCCCCCcccccCCCCCEEeeccCccchhhcccCccccccccc
Q 007687 434 LEELKMDYTGEVQQFVFHSLKKVE----------IVNSYKLKDLTFLVFAPNLESIEVLGCVAMEEMVSVGKFAAVPEVT 503 (593)
Q Consensus 434 ~~~l~~~~~~~~~~~~l~~L~~L~----------l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 503 (593)
.. +++. .+++|+.|+ +++|..+..+| .+.+++|+.|++++|..++.++.. ...+..+
T Consensus 246 ~~-~~~~--------~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~~--~~~L~~L- 312 (457)
T 3bz5_A 246 TE-LDVS--------TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDCQ--AAGITEL- 312 (457)
T ss_dssp SC-CCCT--------TCTTCCEEECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEECT--TCCCSCC-
T ss_pred CC-cCHH--------HCCCCCEEeccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCcccceeccC--CCcceEe-
Confidence 43 2221 255555544 44443333333 567899999999999877776531 1222222
Q ss_pred CCCCCCcccceecccccccCcccCCCCCCCCccceeeeccC
Q 007687 504 ANLNPFAKLQYLDLVGAINLKSIYWMPLSFPLLKYLRAMNC 544 (593)
Q Consensus 504 ~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~L~~L~i~~C 544 (593)
.+.+.++|+.|+++++ .++.++ ...+++|+.|++++.
T Consensus 313 -~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 313 -DLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVNA 349 (457)
T ss_dssp -CCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEECCSS
T ss_pred -chhhcccCCEEECCCC-cccccc--cccCCcCcEEECCCC
Confidence 3556678888888774 566653 456788888888764
No 37
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=1e-22 Score=204.10 Aligned_cols=91 Identities=22% Similarity=0.326 Sum_probs=70.7
Q ss_pred cCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCcccCCCCCCcEeeCCCCcCcccchhhhccccCceeec
Q 007687 234 TCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISDLVSLQHLDLSESDISELPGELKALVNLKCLNL 313 (593)
Q Consensus 234 ~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l 313 (593)
...+++.|++++|.++.+|.. +.++++|++|+|++|.++.+|..++++++|++|++++|.++.+|..++++++|++|++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSC-GGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred cccceeEEEccCCCchhcChh-hhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 346677777777777777776 5668888888888888777887788888888888888888888877888888888888
Q ss_pred cccccccccchh
Q 007687 314 EWTRNLITIPRQ 325 (593)
Q Consensus 314 ~~~~~l~~lp~~ 325 (593)
++|..++.+|..
T Consensus 158 ~~n~~~~~~p~~ 169 (328)
T 4fcg_A 158 RACPELTELPEP 169 (328)
T ss_dssp EEETTCCCCCSC
T ss_pred CCCCCccccChh
Confidence 887667777765
No 38
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=7.7e-22 Score=218.42 Aligned_cols=246 Identities=14% Similarity=0.148 Sum_probs=169.6
Q ss_pred eEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcC-CcccCCCCCCcEeeCCCCcC
Q 007687 217 RRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTEL-PVGISDLVSLQHLDLSESDI 295 (593)
Q Consensus 217 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~i 295 (593)
+.++.+++.+..+|... .+++++|++++|.++.+++..|.++++|++|+|++|.++.+ |..++++++|++|++++|.+
T Consensus 7 ~~~~cs~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 85 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85 (680)
T ss_dssp SEEECCSSCCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC
T ss_pred CeeECCCCCcccccccc-CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc
Confidence 46788888888888643 27999999999999999988899999999999999999977 67899999999999999999
Q ss_pred cccch-hhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccchhhhcCCCCCce
Q 007687 296 SELPG-ELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELLGLKYLEV 374 (593)
Q Consensus 296 ~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~ 374 (593)
+.+|. .++++++|++|++++| .+..+|+..++++++|++|++.++... ...+..++.+++|+.
T Consensus 86 ~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~---------------~~~~~~~~~l~~L~~ 149 (680)
T 1ziw_A 86 SQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLS---------------STKLGTQVQLENLQE 149 (680)
T ss_dssp CCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSSCCS---------------CCCCCSSSCCTTCCE
T ss_pred CccChhhhccCCCCCEEECCCC-ccCccChhHccccCCCCEEECCCCccc---------------ccCchhhcccccCCE
Confidence 99997 5999999999999999 677787656999999999999998763 223445667888888
Q ss_pred EEEEecCccchhhhhhcccccccceEEEecccCCCceeeecccccc---------------------------cccccee
Q 007687 375 ISFTLRSSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALADL---------------------------KQLNRLR 427 (593)
Q Consensus 375 L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l---------------------------~~L~~L~ 427 (593)
|+++.+.........-......+|+.|+++++.- .......+..+ ++|+.|+
T Consensus 150 L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~ 228 (680)
T 1ziw_A 150 LLLSNNKIQALKSEELDIFANSSLKKLELSSNQI-KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLS 228 (680)
T ss_dssp EECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC-CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEE
T ss_pred EEccCCcccccCHHHhhccccccccEEECCCCcc-cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEE
Confidence 8887665544322111111124677777776632 22221222222 3444555
Q ss_pred eccccccceeeeccCCcccccCCCCccEEEEeCCCCCCCCc--ccccCCCCCEEeeccCc
Q 007687 428 IAECKKLEELKMDYTGEVQQFVFHSLKKVEIVNSYKLKDLT--FLVFAPNLESIEVLGCV 485 (593)
Q Consensus 428 l~~~~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~ 485 (593)
++++.... +.+.+... ...++|+.|++++| .++.++ .++.+++|++|++++|.
T Consensus 229 L~~n~l~~-~~~~~~~~---l~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (680)
T 1ziw_A 229 LSNSQLST-TSNTTFLG---LKWTNLTMLDLSYN-NLNVVGNDSFAWLPQLEYFFLEYNN 283 (680)
T ss_dssp CTTSCCCE-ECTTTTGG---GGGSCCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSCC
T ss_pred ccCCcccc-cChhHhhc---cCcCCCCEEECCCC-CcCccCcccccCcccccEeeCCCCc
Confidence 55443222 22233221 01134677777666 344432 25666667777766664
No 39
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.88 E-value=8.9e-22 Score=216.06 Aligned_cols=145 Identities=22% Similarity=0.293 Sum_probs=122.5
Q ss_pred EEEEcCCcceecCCCCCCcceeEEEeeccCcccccc--cccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCC
Q 007687 196 FLVYAGVGLTEAPEVKGWENVRRISLMDNQITNLSE--VATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELT 273 (593)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~ 273 (593)
.+.+.+.+++.+|.... +++++|++++|.++.++. +..+++|++|++++|.++.++++.|.++++|++|+|++|.++
T Consensus 35 ~~~c~~~~l~~vP~~lp-~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~ 113 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 113 (635)
T ss_dssp EEECTTSCCSSCCSSSC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EEECCCCCcCccCCCCC-cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC
Confidence 45566777888885332 589999999999999875 388999999999999999999888999999999999999999
Q ss_pred cCCc-ccCCCCCCcEeeCCCCcCcccch-hhhccccCceeeccccccccc--cchhhcCCCccCceeeccCCCC
Q 007687 274 ELPV-GISDLVSLQHLDLSESDISELPG-ELKALVNLKCLNLEWTRNLIT--IPRQLISNLSRLHVLRMFGASH 343 (593)
Q Consensus 274 ~lp~-~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~--lp~~~i~~l~~L~~L~l~~~~~ 343 (593)
.+|. .|+++.+|++|++++|+++.+|. .++++++|++|++++| .+.. +|.. ++.+++|++|++.++..
T Consensus 114 ~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~-~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 114 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECCSSCC
T ss_pred CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccC-ccccCCCchh-hccchhhhhhcccCccc
Confidence 9875 68999999999999999998885 4889999999999999 4543 4554 88899999999988754
No 40
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=1.9e-21 Score=219.88 Aligned_cols=151 Identities=21% Similarity=0.235 Sum_probs=126.2
Q ss_pred eEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCC-CCCcC-CcccCCCCCCcEeeCCCCc
Q 007687 217 RRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHA-ELTEL-PVGISDLVSLQHLDLSESD 294 (593)
Q Consensus 217 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~-~l~~l-p~~i~~L~~L~~L~L~~~~ 294 (593)
+..+.++++++.+|. ..++|++|++++|.++.+++..|.++++|++|+|++| .+..+ |..|+++++|++|+|++|.
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence 466777888999987 6789999999999999987777999999999999999 45567 7789999999999999999
Q ss_pred Cccc-chhhhccccCceeeccccccccccch-hhcCCCccCceeeccCCCCCCCCCCCccccccCCcccchhhhcCCCCC
Q 007687 295 ISEL-PGELKALVNLKCLNLEWTRNLITIPR-QLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELLGLKYL 372 (593)
Q Consensus 295 i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L 372 (593)
++.+ |..++++++|++|++++|.....+|. ..++++++|++|+++++... .......++++++|
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~--------------~~~~~~~~~~L~~L 150 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIR--------------SLYLHPSFGKLNSL 150 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCC--------------CCCCCGGGGTCSSC
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccc--------------ccccchhHhhCCCC
Confidence 9976 78899999999999999944333443 34889999999999998764 22233568889999
Q ss_pred ceEEEEecCcc
Q 007687 373 EVISFTLRSSH 383 (593)
Q Consensus 373 ~~L~i~~~~~~ 383 (593)
+.|+++.+...
T Consensus 151 ~~L~Ls~N~i~ 161 (844)
T 3j0a_A 151 KSIDFSSNQIF 161 (844)
T ss_dssp CEEEEESSCCC
T ss_pred CEEECCCCcCC
Confidence 99999876543
No 41
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=8.4e-22 Score=197.41 Aligned_cols=229 Identities=24% Similarity=0.302 Sum_probs=168.6
Q ss_pred cCCCCcEEEcCCCCCCcCCcccCCCCCCcEeeCCCCcCcccchhhhccccCceeeccccccccccchhhcCCCccCceee
Q 007687 258 FMPSLKVLNLSHAELTELPVGISDLVSLQHLDLSESDISELPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLR 337 (593)
Q Consensus 258 ~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~ 337 (593)
...++++|+|+++.++.+|..++++++|++|++++|.++.+|..++++++|++|++++| .+..+|.. ++++++|++|+
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~-l~~l~~L~~L~ 156 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPAS-IASLNRLRELS 156 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGG-GGGCTTCCEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHH-HhcCcCCCEEE
Confidence 46889999999999999999999999999999999999999999999999999999999 67799987 99999999999
Q ss_pred ccCCCCCCCCCCCccccccCCcccchhhhcCCCCCceEEEEecCccchhhhhhcccccccceEEEecccCCCceeeeccc
Q 007687 338 MFGASHNAFDGASEDSILFGGGALIVEELLGLKYLEVISFTLRSSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSAL 417 (593)
Q Consensus 338 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l 417 (593)
+.+|... ...+..+.. ..+ ...+
T Consensus 157 L~~n~~~---------------~~~p~~~~~--------------------------------~~~----------~~~~ 179 (328)
T 4fcg_A 157 IRACPEL---------------TELPEPLAS--------------------------------TDA----------SGEH 179 (328)
T ss_dssp EEEETTC---------------CCCCSCSEE--------------------------------EC-----------CCCE
T ss_pred CCCCCCc---------------cccChhHhh--------------------------------ccc----------hhhh
Confidence 9987643 111111110 000 0124
Q ss_pred cccccccceeeccccccceeeeccCCcccccCCCCccEEEEeCCCCCCCCc-ccccCCCCCEEeeccCccchhhcccCcc
Q 007687 418 ADLKQLNRLRIAECKKLEELKMDYTGEVQQFVFHSLKKVEIVNSYKLKDLT-FLVFAPNLESIEVLGCVAMEEMVSVGKF 496 (593)
Q Consensus 418 ~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~ 496 (593)
..+++|++|++++|... .+ +.+.. .+++|+.|++++| .++.++ .++.+++|++|++++|.....++.
T Consensus 180 ~~l~~L~~L~L~~n~l~-~l-p~~l~-----~l~~L~~L~L~~N-~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~---- 247 (328)
T 4fcg_A 180 QGLVNLQSLRLEWTGIR-SL-PASIA-----NLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYPP---- 247 (328)
T ss_dssp EESTTCCEEEEEEECCC-CC-CGGGG-----GCTTCCEEEEESS-CCCCCCGGGGGCTTCCEEECTTCTTCCBCCC----
T ss_pred ccCCCCCEEECcCCCcC-cc-hHhhc-----CCCCCCEEEccCC-CCCcCchhhccCCCCCEEECcCCcchhhhHH----
Confidence 55667777777776533 22 33333 3677777777777 455554 377778888888888766555433
Q ss_pred cccccccCCCCCCcccceecccccccCcccCCCCCCCCccceeeeccCcCCCCCCCCCCcc-cccceEEe
Q 007687 497 AAVPEVTANLNPFAKLQYLDLVGAINLKSIYWMPLSFPLLKYLRAMNCHKLKKLPFDSNSA-RERNIVIS 565 (593)
Q Consensus 497 ~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lP~~~~~~-~l~~l~I~ 565 (593)
.+..+++|++|++++|..+..+|.....+++|++|++++|+.+..+|..+..+ +++.+.+.
T Consensus 248 --------~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 248 --------IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp --------CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred --------HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 56677888888888877777777777778888888888888888888777665 55555554
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=1.1e-21 Score=195.44 Aligned_cols=245 Identities=17% Similarity=0.186 Sum_probs=143.0
Q ss_pred cceeEEEeeccCccc---cccc-ccCCcccEEEccC-ccCc-ccchhhhccCCCCcEEEcCCCCCC-cCCcccCCCCCCc
Q 007687 214 ENVRRISLMDNQITN---LSEV-ATCRHLLTLFLNQ-NKLQ-MIHNDFFRFMPSLKVLNLSHAELT-ELPVGISDLVSLQ 286 (593)
Q Consensus 214 ~~lr~L~l~~~~~~~---l~~~-~~~~~Lr~L~l~~-~~l~-~~~~~~~~~l~~Lr~L~L~~~~l~-~lp~~i~~L~~L~ 286 (593)
.++++|+++++.+.+ +|.. ..+++|++|++++ |.+. .+|.. |.++++|++|++++|.++ .+|..++++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 467777777777763 4433 6677777777774 5555 34444 677777777777777776 5677777777777
Q ss_pred EeeCCCCcCc-ccchhhhccccCceeeccccccccccchhhcCCCc-cCceeeccCCCCCCCCCCCccccccCCcccchh
Q 007687 287 HLDLSESDIS-ELPGELKALVNLKCLNLEWTRNLITIPRQLISNLS-RLHVLRMFGASHNAFDGASEDSILFGGGALIVE 364 (593)
Q Consensus 287 ~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (593)
+|++++|.++ .+|..++.+++|++|++++|.....+|.. ++.++ +|++|++.++... ...+.
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~---------------~~~~~ 192 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLT---------------GKIPP 192 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEE---------------EECCG
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeee---------------ccCCh
Confidence 7777777776 66777777777777777777433366665 66666 7777777765431 12222
Q ss_pred hhcCCCCCceEEEEecCccchhhhhhcccccccceEEEecccCCCceeeeccccccccccceeeccccccceeeeccCCc
Q 007687 365 ELLGLKYLEVISFTLRSSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIAECKKLEELKMDYTGE 444 (593)
Q Consensus 365 ~L~~l~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~ 444 (593)
.+..++ |+.|+++ ++. ........+..+++|+.|++++|..... .+. ..
T Consensus 193 ~~~~l~-L~~L~Ls--------------------------~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~-~~- 241 (313)
T 1ogq_A 193 TFANLN-LAFVDLS--------------------------RNM-LEGDASVLFGSDKNTQKIHLAKNSLAFD-LGK-VG- 241 (313)
T ss_dssp GGGGCC-CSEEECC--------------------------SSE-EEECCGGGCCTTSCCSEEECCSSEECCB-GGG-CC-
T ss_pred HHhCCc-ccEEECc--------------------------CCc-ccCcCCHHHhcCCCCCEEECCCCceeee-cCc-cc-
Confidence 333332 4444333 321 1111123455666777777776654321 111 11
Q ss_pred ccccCCCCccEEEEeCCCCCC-CCc-ccccCCCCCEEeeccCccchhhcccCcccccccccCCCCCCcccceeccccccc
Q 007687 445 VQQFVFHSLKKVEIVNSYKLK-DLT-FLVFAPNLESIEVLGCVAMEEMVSVGKFAAVPEVTANLNPFAKLQYLDLVGAIN 522 (593)
Q Consensus 445 ~~~~~l~~L~~L~l~~c~~l~-~l~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 522 (593)
.+++|++|+++++ .++ .+| .++.+++|++|++++|.....++. ...+++|+.|++.+.+.
T Consensus 242 ----~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~-------------~~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 242 ----LSKNLNGLDLRNN-RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-------------GGNLQRFDVSAYANNKC 303 (313)
T ss_dssp ----CCTTCCEEECCSS-CCEECCCGGGGGCTTCCEEECCSSEEEEECCC-------------STTGGGSCGGGTCSSSE
T ss_pred ----ccCCCCEEECcCC-cccCcCChHHhcCcCCCEEECcCCcccccCCC-------------CccccccChHHhcCCCC
Confidence 2566777777666 333 333 366666666776666644333321 24566666666666554
Q ss_pred Cc
Q 007687 523 LK 524 (593)
Q Consensus 523 L~ 524 (593)
+.
T Consensus 304 lc 305 (313)
T 1ogq_A 304 LC 305 (313)
T ss_dssp EE
T ss_pred cc
Confidence 43
No 43
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.86 E-value=2.1e-21 Score=197.00 Aligned_cols=121 Identities=26% Similarity=0.324 Sum_probs=71.2
Q ss_pred EEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcC-CcccCCCCCCcEeeCCCCcCcc
Q 007687 219 ISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTEL-PVGISDLVSLQHLDLSESDISE 297 (593)
Q Consensus 219 L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~ 297 (593)
.+.+++.++.+|.. -.++|++|++++|.++.++...|.++++|++|++++|.++.+ |..++++++|++|++++|.++.
T Consensus 36 c~~~~~~l~~iP~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 114 (353)
T 2z80_A 36 CKGSSGSLNSIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN 114 (353)
T ss_dssp EECCSTTCSSCCTT-CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS
T ss_pred eeCCCCCccccccc-ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc
Confidence 45555555555542 123566666666666666654466666666666666666655 3456666666666666666666
Q ss_pred cchh-hhccccCceeeccccccccccch-hhcCCCccCceeeccCC
Q 007687 298 LPGE-LKALVNLKCLNLEWTRNLITIPR-QLISNLSRLHVLRMFGA 341 (593)
Q Consensus 298 lp~~-i~~L~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~ 341 (593)
+|.. ++++++|++|++++| .+..+|. ..++++++|++|++.++
T Consensus 115 ~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n 159 (353)
T 2z80_A 115 LSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNM 159 (353)
T ss_dssp CCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEES
T ss_pred CCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCC
Confidence 6544 556666666666666 4555554 33556666666666655
No 44
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.86 E-value=5.2e-21 Score=194.14 Aligned_cols=267 Identities=19% Similarity=0.222 Sum_probs=194.2
Q ss_pred cEEEEcCCcceecCCCCCCcceeEEEeeccCcccccc--cccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCC
Q 007687 195 NFLVYAGVGLTEAPEVKGWENVRRISLMDNQITNLSE--VATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAEL 272 (593)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l 272 (593)
..+...+..++.+|... .+++++|++++|.+..++. +..+++|++|++++|.++.+++..|.++++|++|++++|.+
T Consensus 34 ~~c~~~~~~l~~iP~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (353)
T 2z80_A 34 GICKGSSGSLNSIPSGL-TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112 (353)
T ss_dssp SEEECCSTTCSSCCTTC-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred eEeeCCCCCcccccccc-cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC
Confidence 34566777788888632 3699999999999999887 48899999999999999999877799999999999999999
Q ss_pred CcCCcc-cCCCCCCcEeeCCCCcCcccch--hhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCC
Q 007687 273 TELPVG-ISDLVSLQHLDLSESDISELPG--ELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGA 349 (593)
Q Consensus 273 ~~lp~~-i~~L~~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~ 349 (593)
+.+|.. ++++++|++|++++|.++.+|. .+.++++|++|++++|..+..++...++++++|++|++.++...
T Consensus 113 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~----- 187 (353)
T 2z80_A 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ----- 187 (353)
T ss_dssp SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC-----
T ss_pred CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC-----
Confidence 999876 8999999999999999999987 78999999999999996677776656999999999999988763
Q ss_pred CccccccCCcccchhhhcCCCCCceEEEEecCccchhhhhhcccccccceEEEecccCCCceeeec---cccccccccce
Q 007687 350 SEDSILFGGGALIVEELLGLKYLEVISFTLRSSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVS---ALADLKQLNRL 426 (593)
Q Consensus 350 ~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~l~~l~~L~~L 426 (593)
...+..++.+++|+.|+++.+....++.... ...++|+.|+++++.-. ..... .......++.+
T Consensus 188 ----------~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~--~~~~~L~~L~L~~n~l~-~~~~~~l~~~~~~~~l~~l 254 (353)
T 2z80_A 188 ----------SYEPKSLKSIQNVSHLILHMKQHILLLEIFV--DVTSSVECLELRDTDLD-TFHFSELSTGETNSLIKKF 254 (353)
T ss_dssp ----------EECTTTTTTCSEEEEEEEECSCSTTHHHHHH--HHTTTEEEEEEESCBCT-TCCCC------CCCCCCEE
T ss_pred ----------ccCHHHHhccccCCeecCCCCccccchhhhh--hhcccccEEECCCCccc-cccccccccccccchhhcc
Confidence 3345678888999999999877655543221 12347788888776321 11111 11223344445
Q ss_pred eeccccccce---eeeccCCcccccCCCCccEEEEeCCCCCCCCcc--cccCCCCCEEeeccCcc
Q 007687 427 RIAECKKLEE---LKMDYTGEVQQFVFHSLKKVEIVNSYKLKDLTF--LVFAPNLESIEVLGCVA 486 (593)
Q Consensus 427 ~l~~~~~~~~---l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--l~~l~~L~~L~l~~c~~ 486 (593)
++.++..... -.+.+.. .+++|+.|+++++ .++.++. ++.+++|++|++++|+.
T Consensus 255 ~L~~~~l~~~~l~~l~~~l~-----~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 255 TFRNVKITDESLFQVMKLLN-----QISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp EEESCBCCHHHHHHHHHHHH-----TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccccccccCcchhhhHHHHh-----cccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCc
Confidence 5444332110 0112222 2667777777776 5555554 45667777777776643
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=9.5e-21 Score=190.46 Aligned_cols=285 Identities=17% Similarity=0.194 Sum_probs=204.0
Q ss_pred CcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcC-CcccCCCCCCcEeeCCCCcCccc-chhhhccccCceeec
Q 007687 236 RHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTEL-PVGISDLVSLQHLDLSESDISEL-PGELKALVNLKCLNL 313 (593)
Q Consensus 236 ~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~l 313 (593)
.++++++++++.++.+|..+ .++|++|++++|.++.+ |..++++++|++|++++|.++.+ |..++++++|++|++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred ccCCEEECCCCCccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 37999999999999999863 47899999999999988 45899999999999999999987 678999999999999
Q ss_pred cccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccchhhhcCCCCCceEEEEecCccchhhhhhccc
Q 007687 314 EWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELLGLKYLEVISFTLRSSHGLQSVLSSHK 393 (593)
Q Consensus 314 ~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~ 393 (593)
++| .+..+|.. +. ++|++|++.++... ......+..+++|+.|+++.+.............
T Consensus 110 ~~n-~l~~l~~~-~~--~~L~~L~l~~n~i~---------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 170 (332)
T 2ft3_A 110 SKN-HLVEIPPN-LP--SSLVELRIHDNRIR---------------KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170 (332)
T ss_dssp CSS-CCCSCCSS-CC--TTCCEEECCSSCCC---------------CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSC
T ss_pred CCC-cCCccCcc-cc--ccCCEEECCCCccC---------------ccCHhHhCCCccCCEEECCCCccccCCCCccccc
Confidence 999 68889986 43 89999999988763 2223447888999999998776543222222222
Q ss_pred ccccceEEEecccCCCceeeeccccccccccceeeccccccceeeeccCCcccccCCCCccEEEEeCCCCCCCCc--ccc
Q 007687 394 LRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIAECKKLEELKMDYTGEVQQFVFHSLKKVEIVNSYKLKDLT--FLV 471 (593)
Q Consensus 394 ~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~--~l~ 471 (593)
.. +|+.|+++++. ...++ ..+ .++|++|++++|.... +.+.... .+++|+.|+++++ .++.++ .++
T Consensus 171 ~l-~L~~L~l~~n~-l~~l~-~~~--~~~L~~L~l~~n~i~~-~~~~~l~-----~l~~L~~L~L~~N-~l~~~~~~~~~ 238 (332)
T 2ft3_A 171 GL-KLNYLRISEAK-LTGIP-KDL--PETLNELHLDHNKIQA-IELEDLL-----RYSKLYRLGLGHN-QIRMIENGSLS 238 (332)
T ss_dssp SC-CCSCCBCCSSB-CSSCC-SSS--CSSCSCCBCCSSCCCC-CCTTSST-----TCTTCSCCBCCSS-CCCCCCTTGGG
T ss_pred CC-ccCEEECcCCC-CCccC-ccc--cCCCCEEECCCCcCCc-cCHHHhc-----CCCCCCEEECCCC-cCCcCChhHhh
Confidence 22 78888888764 22233 111 2688889998876443 3334443 3788999999888 666655 378
Q ss_pred cCCCCCEEeeccCccchhhcccCcccccccccCCCCCCcccceecccccccCcccCCCCC-------CCCccceeeeccC
Q 007687 472 FAPNLESIEVLGCVAMEEMVSVGKFAAVPEVTANLNPFAKLQYLDLVGAINLKSIYWMPL-------SFPLLKYLRAMNC 544 (593)
Q Consensus 472 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~-------~~~~L~~L~i~~C 544 (593)
.+++|++|++++|.. ..++. .+..+++|+.|+++++ .++.++.... .+++|+.|++.++
T Consensus 239 ~l~~L~~L~L~~N~l-~~lp~------------~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N 304 (332)
T 2ft3_A 239 FLPTLRELHLDNNKL-SRVPA------------GLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNN 304 (332)
T ss_dssp GCTTCCEEECCSSCC-CBCCT------------TGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSS
T ss_pred CCCCCCEEECCCCcC-eecCh------------hhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecC
Confidence 888999999988843 33322 4667888999999884 5666654321 2577888888888
Q ss_pred cCC--CCCCCCCCcc-cccceEEeccc
Q 007687 545 HKL--KKLPFDSNSA-RERNIVISGYT 568 (593)
Q Consensus 545 ~~L--~~lP~~~~~~-~l~~l~I~~~~ 568 (593)
|-. ...|..+... .++.+.+.+++
T Consensus 305 ~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 305 PVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccccCcccccccchhhhhhccccc
Confidence 744 2344444444 67777776654
No 46
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.86 E-value=1e-20 Score=197.83 Aligned_cols=239 Identities=22% Similarity=0.264 Sum_probs=178.2
Q ss_pred EEEEcCCcceecCCCCCCcceeEEEeeccCcccccc--cccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCC
Q 007687 196 FLVYAGVGLTEAPEVKGWENVRRISLMDNQITNLSE--VATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELT 273 (593)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~ 273 (593)
.+.+.+..++.+|.... ++++.|++++|.+..++. +..+++|++|++++|.++.+++..|.++++|++|+|++|.++
T Consensus 47 ~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~ 125 (440)
T 3zyj_A 47 KVICVRKNLREVPDGIS-TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT 125 (440)
T ss_dssp EEECCSCCCSSCCSCCC-TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS
T ss_pred EEEeCCCCcCcCCCCCC-CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC
Confidence 45566667777775332 678888888888888764 378888888888888888888777888888888888888888
Q ss_pred cCCc-ccCCCCCCcEeeCCCCcCcccch-hhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCc
Q 007687 274 ELPV-GISDLVSLQHLDLSESDISELPG-ELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASE 351 (593)
Q Consensus 274 ~lp~-~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~ 351 (593)
.+|. .+..+++|++|++++|.++.+|. .+.++++|++|++++|..+..+|.+.+.++++|++|++.++...
T Consensus 126 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~------- 198 (440)
T 3zyj_A 126 TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR------- 198 (440)
T ss_dssp SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-------
T ss_pred eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-------
Confidence 8865 68888888888888888888774 57788888888888877788888776888888888888877653
Q ss_pred cccccCCcccchhhhcCCCCCceEEEEecCccchhhhhhcccccccceEEEecccCCCceeeeccccccccccceeeccc
Q 007687 352 DSILFGGGALIVEELLGLKYLEVISFTLRSSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIAEC 431 (593)
Q Consensus 352 ~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 431 (593)
.+..+..+++ |+.|+++++ .+..+....+..+++|++|++.+|
T Consensus 199 ----------~~~~~~~l~~--------------------------L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n 241 (440)
T 3zyj_A 199 ----------EIPNLTPLIK--------------------------LDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQS 241 (440)
T ss_dssp ----------SCCCCTTCSS--------------------------CCEEECTTS-CCCEECTTTTTTCTTCCEEECTTC
T ss_pred ----------cccccCCCcc--------------------------cCEEECCCC-ccCccChhhhccCccCCEEECCCC
Confidence 1122344444 445555554 233343356778889999999887
Q ss_pred cccceeeeccCCcccccCCCCccEEEEeCCCCCCCCcc--cccCCCCCEEeeccCcc
Q 007687 432 KKLEELKMDYTGEVQQFVFHSLKKVEIVNSYKLKDLTF--LVFAPNLESIEVLGCVA 486 (593)
Q Consensus 432 ~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--l~~l~~L~~L~l~~c~~ 486 (593)
... .+.+..+. .+++|+.|+|+++ .++.++. +..+++|+.|+|++|+.
T Consensus 242 ~l~-~~~~~~~~-----~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 242 QIQ-VIERNAFD-----NLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CCC-EECTTSST-----TCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred cee-EEChhhhc-----CCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCCc
Confidence 643 34454444 3788999999988 6777664 67889999999988863
No 47
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.86 E-value=1e-20 Score=198.54 Aligned_cols=238 Identities=22% Similarity=0.244 Sum_probs=171.8
Q ss_pred EEEEcCCcceecCCCCCCcceeEEEeeccCcccccc--cccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCC
Q 007687 196 FLVYAGVGLTEAPEVKGWENVRRISLMDNQITNLSE--VATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELT 273 (593)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~ 273 (593)
.+.+.+..++.+|... .+++++|++++|.+..++. +..+++|++|++++|.++.+++..|.++++|++|+|++|.++
T Consensus 58 ~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 136 (452)
T 3zyi_A 58 KVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT 136 (452)
T ss_dssp EEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred EEEECCCCcCccCCCC-CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC
Confidence 4555666667777432 2678888888888887644 377888888888888888877766888888888888888888
Q ss_pred cCCc-ccCCCCCCcEeeCCCCcCcccch-hhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCc
Q 007687 274 ELPV-GISDLVSLQHLDLSESDISELPG-ELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASE 351 (593)
Q Consensus 274 ~lp~-~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~ 351 (593)
.+|. .++.+++|++|++++|.++.+|. .+.++++|++|++++|..+..+|.+.+.++++|++|++.++...
T Consensus 137 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~------- 209 (452)
T 3zyi_A 137 VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK------- 209 (452)
T ss_dssp BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-------
T ss_pred ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-------
Confidence 7765 47788888888888888887774 57788888888888877777787766788888888888877653
Q ss_pred cccccCCcccchhhhcCCCCCceEEEEecCccchhhhhhcccccccceEEEecccCCCceeeeccccccccccceeeccc
Q 007687 352 DSILFGGGALIVEELLGLKYLEVISFTLRSSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIAEC 431 (593)
Q Consensus 352 ~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 431 (593)
.+..+..+++|+ .|+++++. ...+....+..+++|++|++.+|
T Consensus 210 ----------~~~~~~~l~~L~--------------------------~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n 252 (452)
T 3zyi_A 210 ----------DMPNLTPLVGLE--------------------------ELEMSGNH-FPEIRPGSFHGLSSLKKLWVMNS 252 (452)
T ss_dssp ----------SCCCCTTCTTCC--------------------------EEECTTSC-CSEECGGGGTTCTTCCEEECTTS
T ss_pred ----------cccccccccccc--------------------------EEECcCCc-CcccCcccccCccCCCEEEeCCC
Confidence 112344444444 44554442 23333356778888999999887
Q ss_pred cccceeeeccCCcccccCCCCccEEEEeCCCCCCCCcc--cccCCCCCEEeeccCc
Q 007687 432 KKLEELKMDYTGEVQQFVFHSLKKVEIVNSYKLKDLTF--LVFAPNLESIEVLGCV 485 (593)
Q Consensus 432 ~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--l~~l~~L~~L~l~~c~ 485 (593)
.... +.+..+. .+++|+.|+|+++ .++.++. +..+++|+.|+|++|+
T Consensus 253 ~l~~-~~~~~~~-----~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 253 QVSL-IERNAFD-----GLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CCCE-ECTTTTT-----TCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred cCce-ECHHHhc-----CCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 6443 4444444 3788999999988 6777664 6778899999998886
No 48
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.85 E-value=9.5e-20 Score=190.56 Aligned_cols=213 Identities=22% Similarity=0.239 Sum_probs=141.0
Q ss_pred CcEEEEcCCcceecCCCCCCcceeEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCC
Q 007687 194 ENFLVYAGVGLTEAPEVKGWENVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELT 273 (593)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~ 273 (593)
-..+.+.+..++.+|.. .+++++|++++|.+..+|.. .++|++|++++|.++.++.. .++|++|++++|.++
T Consensus 73 l~~L~l~~~~l~~lp~~--~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~ 144 (454)
T 1jl5_A 73 AHELELNNLGLSSLPEL--PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLE 144 (454)
T ss_dssp CSEEECTTSCCSCCCSC--CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCS
T ss_pred CCEEEecCCccccCCCC--cCCCCEEEccCCcCCccccc--cCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCC
Confidence 35677777777777763 36888888888888887643 47788888888887776542 267888888888888
Q ss_pred cCCcccCCCCCCcEeeCCCCcCcccchhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCC---C
Q 007687 274 ELPVGISDLVSLQHLDLSESDISELPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGA---S 350 (593)
Q Consensus 274 ~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~---~ 350 (593)
.+| .++++++|++|++++|.++.+|..+ .+|++|++++| .+..+|. ++++++|++|++.++....++.. +
T Consensus 145 ~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n-~l~~l~~--~~~l~~L~~L~l~~N~l~~l~~~~~~L 217 (454)
T 1jl5_A 145 KLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNN-QLEELPE--LQNLPFLTAIYADNNSLKKLPDLPLSL 217 (454)
T ss_dssp SCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCSSCCCCCTTC
T ss_pred CCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCC-cCCcCcc--ccCCCCCCEEECCCCcCCcCCCCcCcc
Confidence 887 5888888888888888888777643 47888888888 5666774 78888888888887765432221 1
Q ss_pred ccccccCCcccchhhhcCCCCCceEEEEecCccchhhhhhcccccccceEEEecccCCCceeeeccccccccccceeecc
Q 007687 351 EDSILFGGGALIVEELLGLKYLEVISFTLRSSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIAE 430 (593)
Q Consensus 351 ~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 430 (593)
+.-.+....-..+..++.+++|+.|+++.+....++. ...+|+.|+++++.- ..++ ..+++|++|++++
T Consensus 218 ~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~------~~~~L~~L~l~~N~l-~~l~----~~~~~L~~L~ls~ 286 (454)
T 1jl5_A 218 ESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPD------LPPSLEALNVRDNYL-TDLP----ELPQSLTFLDVSE 286 (454)
T ss_dssp CEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCS------CCTTCCEEECCSSCC-SCCC----CCCTTCCEEECCS
T ss_pred cEEECcCCcCCcccccCCCCCCCEEECCCCcCCcccc------cccccCEEECCCCcc-cccC----cccCcCCEEECcC
Confidence 1111111111123346777888888887766554432 224777777777642 2222 1125667777766
Q ss_pred cc
Q 007687 431 CK 432 (593)
Q Consensus 431 ~~ 432 (593)
|.
T Consensus 287 N~ 288 (454)
T 1jl5_A 287 NI 288 (454)
T ss_dssp SC
T ss_pred Cc
Confidence 64
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=6.5e-20 Score=184.17 Aligned_cols=283 Identities=17% Similarity=0.199 Sum_probs=212.0
Q ss_pred cEEEEcCCcceecCCCCCCcceeEEEeeccCcccccc--cccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCC
Q 007687 195 NFLVYAGVGLTEAPEVKGWENVRRISLMDNQITNLSE--VATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAEL 272 (593)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l 272 (593)
+.+.+.+..+..+|... .+.+++|++++|.+..++. +..+++|++|++++|.++.+++..|..+++|++|++++|.+
T Consensus 34 ~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (330)
T 1xku_A 34 RVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112 (330)
T ss_dssp TEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC
T ss_pred eEEEecCCCccccCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcC
Confidence 45667777777777533 3789999999999999876 48899999999999999998666699999999999999999
Q ss_pred CcCCcccCCCCCCcEeeCCCCcCcccch-hhhccccCceeeccccccccc--cchhhcCCCccCceeeccCCCCCCCCCC
Q 007687 273 TELPVGISDLVSLQHLDLSESDISELPG-ELKALVNLKCLNLEWTRNLIT--IPRQLISNLSRLHVLRMFGASHNAFDGA 349 (593)
Q Consensus 273 ~~lp~~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~--lp~~~i~~l~~L~~L~l~~~~~~~~~~~ 349 (593)
+.+|..+. ++|++|++++|.++.+|. .+.++++|++|++++|. +.. ++...+.++++|++|++.++....+
T Consensus 113 ~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l--- 186 (330)
T 1xku_A 113 KELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTNITTI--- 186 (330)
T ss_dssp SBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSCCCSC---
T ss_pred CccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCccccC---
Confidence 99998776 799999999999998875 58899999999999994 432 3333489999999999998876411
Q ss_pred CccccccCCcccchhhhcCCCCCceEEEEecCccchhhhhhcccccccceEEEecccCCCceeeeccccccccccceeec
Q 007687 350 SEDSILFGGGALIVEELLGLKYLEVISFTLRSSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIA 429 (593)
Q Consensus 350 ~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 429 (593)
+..+ .++|+.|+++.+....... ......++|+.|+++++. ........+..+++|++|+++
T Consensus 187 -------------~~~~--~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~ 248 (330)
T 1xku_A 187 -------------PQGL--PPSLTELHLDGNKITKVDA--ASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLN 248 (330)
T ss_dssp -------------CSSC--CTTCSEEECTTSCCCEECT--GGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECC
T ss_pred -------------Cccc--cccCCEEECCCCcCCccCH--HHhcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEECC
Confidence 1111 1678888888766554321 112234589999999884 444544578889999999999
Q ss_pred cccccceeeeccCCcccccCCCCccEEEEeCCCCCCCCcc--c------ccCCCCCEEeeccCccchhhcccCccccccc
Q 007687 430 ECKKLEELKMDYTGEVQQFVFHSLKKVEIVNSYKLKDLTF--L------VFAPNLESIEVLGCVAMEEMVSVGKFAAVPE 501 (593)
Q Consensus 430 ~~~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--l------~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 501 (593)
+|.... .+.+.. .+++|+.|+++++ .++.++. + ...+.|+.|++.+|+.....+.
T Consensus 249 ~N~l~~--lp~~l~-----~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~--------- 311 (330)
T 1xku_A 249 NNKLVK--VPGGLA-----DHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ--------- 311 (330)
T ss_dssp SSCCSS--CCTTTT-----TCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSC---------
T ss_pred CCcCcc--CChhhc-----cCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCcccccccC---------
Confidence 997553 344444 3899999999999 6777653 2 2357899999999975332111
Q ss_pred ccCCCCCCcccceeccccc
Q 007687 502 VTANLNPFAKLQYLDLVGA 520 (593)
Q Consensus 502 ~~~~~~~~~~L~~L~l~~c 520 (593)
+.....+++|+.++++++
T Consensus 312 -~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 312 -PSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp -GGGGTTCCCGGGEEC---
T ss_pred -ccccccccceeEEEeccc
Confidence 124556788888888763
No 50
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.85 E-value=4.7e-20 Score=202.34 Aligned_cols=352 Identities=18% Similarity=0.152 Sum_probs=235.5
Q ss_pred CcEEEEcCCcceecC--CCCCCcceeEEEeeccCccccccc--ccCCcccEEEccCccCcccchhhhccCCCCcEEEcCC
Q 007687 194 ENFLVYAGVGLTEAP--EVKGWENVRRISLMDNQITNLSEV--ATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSH 269 (593)
Q Consensus 194 ~~~~~~~~~~~~~~~--~~~~~~~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~ 269 (593)
-..+.++++.++.++ .+..+++|++|++++|.+..++.. .++++|++|++++|.++.+|+..|.++++|++|+|++
T Consensus 54 ~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~ 133 (635)
T 4g8a_A 54 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 133 (635)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTT
T ss_pred CCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCC
Confidence 467888899998887 478899999999999999998763 7899999999999999999998899999999999999
Q ss_pred CCCCcCCc-ccCCCCCCcEeeCCCCcCcc--cchhhhccccCceeeccccccccccchhhcCCCccCc------------
Q 007687 270 AELTELPV-GISDLVSLQHLDLSESDISE--LPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLH------------ 334 (593)
Q Consensus 270 ~~l~~lp~-~i~~L~~L~~L~L~~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~------------ 334 (593)
|.++.+|. .|+++++|++|++++|.++. +|..++.+++|++|++++| .+..++.+.+..+.+++
T Consensus 134 N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~L~~l~~~~~~~~ls~n~ 212 (635)
T 4g8a_A 134 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNP 212 (635)
T ss_dssp SCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred CcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc-cccccccccccchhhhhhhhhhhhcccCc
Confidence 99999975 69999999999999999874 5788999999999999998 45544432233222221
Q ss_pred ---------------eeeccCCCCC------------------------------------CCCC---------------
Q 007687 335 ---------------VLRMFGASHN------------------------------------AFDG--------------- 348 (593)
Q Consensus 335 ---------------~L~l~~~~~~------------------------------------~~~~--------------- 348 (593)
.+++.++... .+.+
T Consensus 213 l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~ 292 (635)
T 4g8a_A 213 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 292 (635)
T ss_dssp CCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCC
T ss_pred ccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhc
Confidence 1111111000 0000
Q ss_pred --------------CCc--------------------ccc--cc---------------------CCcccchhhhcCCCC
Q 007687 349 --------------ASE--------------------DSI--LF---------------------GGGALIVEELLGLKY 371 (593)
Q Consensus 349 --------------~~~--------------------~~~--~~---------------------~~~~~~~~~L~~l~~ 371 (593)
.+. ... +. ............+++
T Consensus 293 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~ 372 (635)
T 4g8a_A 293 YYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS 372 (635)
T ss_dssp SCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTT
T ss_pred ccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccc
Confidence 000 000 00 000000111234666
Q ss_pred CceEEEEecCcc-------------c----------hhhhhhcccccccceEEEecccCCCceeeeccccccccccceee
Q 007687 372 LEVISFTLRSSH-------------G----------LQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRI 428 (593)
Q Consensus 372 L~~L~i~~~~~~-------------~----------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 428 (593)
|+.|.++.+... . .............|+.+++..+......+...+..+++++.+++
T Consensus 373 L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l 452 (635)
T 4g8a_A 373 LEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 452 (635)
T ss_dssp CCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEEC
T ss_pred cccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccc
Confidence 666665432210 0 01111112234578888887664433334445677888999999
Q ss_pred ccccccceeeeccCCcccccCCCCccEEEEeCCCCCCCCc--ccccCCCCCEEeeccCccchhhcccCcccccccccCCC
Q 007687 429 AECKKLEELKMDYTGEVQQFVFHSLKKVEIVNSYKLKDLT--FLVFAPNLESIEVLGCVAMEEMVSVGKFAAVPEVTANL 506 (593)
Q Consensus 429 ~~~~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~ 506 (593)
+.+.... +.+.... .+++|+.|+++++.....+. .+..+++|++|+|++|. ++.++. ..+
T Consensus 453 s~n~l~~-~~~~~~~-----~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~-----------~~f 514 (635)
T 4g8a_A 453 SHTHTRV-AFNGIFN-----GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSP-----------TAF 514 (635)
T ss_dssp TTSCCEE-CCTTTTT-----TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECT-----------TTT
T ss_pred ccccccc-ccccccc-----cchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc-cCCcCh-----------HHH
Confidence 8876443 2333333 37899999999886555432 37888999999999984 333322 256
Q ss_pred CCCcccceecccccccCcccCCC-CCCCCccceeeeccCcCCCCC-CCCCCcc--cccceEEec
Q 007687 507 NPFAKLQYLDLVGAINLKSIYWM-PLSFPLLKYLRAMNCHKLKKL-PFDSNSA--RERNIVISG 566 (593)
Q Consensus 507 ~~~~~L~~L~l~~c~~L~~l~~~-~~~~~~L~~L~i~~C~~L~~l-P~~~~~~--~l~~l~I~~ 566 (593)
.++++|++|+|+++ +++.++.. ...+++|++|+++++ +++.+ |..+... +|+.+.+.+
T Consensus 515 ~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 515 NSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp TTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTT
T ss_pred cCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeC
Confidence 78899999999985 67777654 346899999999987 45554 4445443 588888864
No 51
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.85 E-value=4.9e-20 Score=192.72 Aligned_cols=272 Identities=19% Similarity=0.188 Sum_probs=150.2
Q ss_pred cceeEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCcccCCCCCCcEeeCCCC
Q 007687 214 ENVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISDLVSLQHLDLSES 293 (593)
Q Consensus 214 ~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~ 293 (593)
+++++|++++|.+..+|.+..+++|++|++++|.++.+|.. ..+|++|++++|.++.+| .++++++|++|++++|
T Consensus 131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNN 205 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS
T ss_pred CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCC----cccccEEECcCCcCCcCc-cccCCCCCCEEECCCC
Confidence 35555566555555555455556666666666655555432 235666666666655555 4666666666666666
Q ss_pred cCcccchhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccchhhhcCCCCCc
Q 007687 294 DISELPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELLGLKYLE 373 (593)
Q Consensus 294 ~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~ 373 (593)
.++.+|... .+|++|++++| .+..+|. ++.+++|++|++.++.... +.. .+++|+
T Consensus 206 ~l~~l~~~~---~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~l~~N~l~~-----------------l~~--~~~~L~ 260 (454)
T 1jl5_A 206 SLKKLPDLP---LSLESIVAGNN-ILEELPE--LQNLPFLTTIYADNNLLKT-----------------LPD--LPPSLE 260 (454)
T ss_dssp CCSSCCCCC---TTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCSS-----------------CCS--CCTTCC
T ss_pred cCCcCCCCc---CcccEEECcCC-cCCcccc--cCCCCCCCEEECCCCcCCc-----------------ccc--cccccC
Confidence 666555432 46666666666 4556663 6677777777777665431 111 236788
Q ss_pred eEEEEecCccchhhhhhcccccccceEEEecccCCCceeeeccccccccccceeeccccccceeeeccCCcccccCCCCc
Q 007687 374 VISFTLRSSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIAECKKLEELKMDYTGEVQQFVFHSL 453 (593)
Q Consensus 374 ~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~l~~L 453 (593)
.|+++.+....++.. ..+|+.|+++++. ...++ .+ .++|+.|++++|.... + +. .+++|
T Consensus 261 ~L~l~~N~l~~l~~~------~~~L~~L~ls~N~-l~~l~--~~--~~~L~~L~l~~N~l~~-i-~~--------~~~~L 319 (454)
T 1jl5_A 261 ALNVRDNYLTDLPEL------PQSLTFLDVSENI-FSGLS--EL--PPNLYYLNASSNEIRS-L-CD--------LPPSL 319 (454)
T ss_dssp EEECCSSCCSCCCCC------CTTCCEEECCSSC-CSEES--CC--CTTCCEEECCSSCCSE-E-CC--------CCTTC
T ss_pred EEECCCCcccccCcc------cCcCCEEECcCCc-cCccc--Cc--CCcCCEEECcCCcCCc-c-cC--------CcCcC
Confidence 888887766554432 3588999998874 22221 11 2688899998876433 2 11 13588
Q ss_pred cEEEEeCCCCCCCCcccccCCCCCEEeeccCccchhhcccCcccccccccCCCCCCcccceecccccccCcc---cCCCC
Q 007687 454 KKVEIVNSYKLKDLTFLVFAPNLESIEVLGCVAMEEMVSVGKFAAVPEVTANLNPFAKLQYLDLVGAINLKS---IYWMP 530 (593)
Q Consensus 454 ~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~---l~~~~ 530 (593)
+.|+++++ .++.++.. +++|++|++++|.. +.++ . .+++|++|+++++ .+.. +|...
T Consensus 320 ~~L~Ls~N-~l~~lp~~--~~~L~~L~L~~N~l-~~lp------------~---~l~~L~~L~L~~N-~l~~l~~ip~~l 379 (454)
T 1jl5_A 320 EELNVSNN-KLIELPAL--PPRLERLIASFNHL-AEVP------------E---LPQNLKQLHVEYN-PLREFPDIPESV 379 (454)
T ss_dssp CEEECCSS-CCSCCCCC--CTTCCEEECCSSCC-SCCC------------C---CCTTCCEEECCSS-CCSSCCCCCTTC
T ss_pred CEEECCCC-cccccccc--CCcCCEEECCCCcc-cccc------------c---hhhhccEEECCCC-CCCcCCCChHHH
Confidence 99999887 66666643 68899999988743 2221 1 4678888888875 3443 44333
Q ss_pred CCC-------------CccceeeeccCcCCC--CCCCCCCc
Q 007687 531 LSF-------------PLLKYLRAMNCHKLK--KLPFDSNS 556 (593)
Q Consensus 531 ~~~-------------~~L~~L~i~~C~~L~--~lP~~~~~ 556 (593)
+.+ ++|++|++++++--. .+|.....
T Consensus 380 ~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~ 420 (454)
T 1jl5_A 380 EDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVED 420 (454)
T ss_dssp CEEECCC----------------------------------
T ss_pred HhhhhcccccccccccCcCCEEECCCCcCCccccchhhHhh
Confidence 333 789999998875332 45544433
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.85 E-value=1.4e-20 Score=186.98 Aligned_cols=241 Identities=20% Similarity=0.238 Sum_probs=142.2
Q ss_pred EEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcC---CcccCCCCCCcEeeCCCCc
Q 007687 218 RISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTEL---PVGISDLVSLQHLDLSESD 294 (593)
Q Consensus 218 ~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~l---p~~i~~L~~L~~L~L~~~~ 294 (593)
.++..++.++.+|.. -.++|++|++++|.++.+|..+|.++++|++|++++|.++.+ |..+..+++|++|++++|.
T Consensus 11 ~l~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 11 EIRCNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89 (306)
T ss_dssp EEECCSSCCSSCCSC-CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred EEEcCCCCcccCCCC-CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence 344555555555542 124666666666666666666566667777777776666543 4455566667777777776
Q ss_pred CcccchhhhccccCceeeccccccccccch-hhcCCCccCceeeccCCCCCCCCCCCccccccCCcccchhhhcCCCCCc
Q 007687 295 ISELPGELKALVNLKCLNLEWTRNLITIPR-QLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELLGLKYLE 373 (593)
Q Consensus 295 i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~ 373 (593)
++.+|..+..+++|++|++++| .+..++. ..+..+++|++|++.++... ......+..+++|+
T Consensus 90 i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~---------------~~~~~~~~~l~~L~ 153 (306)
T 2z66_A 90 VITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTR---------------VAFNGIFNGLSSLE 153 (306)
T ss_dssp EEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCE---------------ECSTTTTTTCTTCC
T ss_pred cccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCC---------------ccchhhcccCcCCC
Confidence 6666666666677777777666 4444443 23666666777766665431 11222233444444
Q ss_pred eEEEEecCccchhhhhhcccccccceEEEecccCCCceeeeccccccccccceeeccccccceeeeccCCcccccCCCCc
Q 007687 374 VISFTLRSSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIAECKKLEELKMDYTGEVQQFVFHSL 453 (593)
Q Consensus 374 ~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~l~~L 453 (593)
.|.++.+.. ........+..+++|++|++++|... .+.+.+.. .+++|
T Consensus 154 ~L~l~~n~l--------------------------~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~-----~l~~L 201 (306)
T 2z66_A 154 VLKMAGNSF--------------------------QENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFN-----SLSSL 201 (306)
T ss_dssp EEECTTCEE--------------------------GGGEECSCCTTCTTCCEEECTTSCCC-EECTTTTT-----TCTTC
T ss_pred EEECCCCcc--------------------------ccccchhHHhhCcCCCEEECCCCCcC-CcCHHHhc-----CCCCC
Confidence 444332111 01011134666788888888887543 34455544 37788
Q ss_pred cEEEEeCCCCCCCCcc--cccCCCCCEEeeccCccchhhcccCcccccccccCCCCCCc-ccceeccccc
Q 007687 454 KKVEIVNSYKLKDLTF--LVFAPNLESIEVLGCVAMEEMVSVGKFAAVPEVTANLNPFA-KLQYLDLVGA 520 (593)
Q Consensus 454 ~~L~l~~c~~l~~l~~--l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~c 520 (593)
+.|+++++ .++.++. +..+++|++|++++|......+. .+..+| +|++|+++++
T Consensus 202 ~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~------------~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 202 QVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ------------ELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp CEEECTTS-CCSBCCSGGGTTCTTCCEEECTTSCCCBCSSS------------SCCCCCTTCCEEECTTC
T ss_pred CEEECCCC-ccCccChhhccCcccCCEeECCCCCCcccCHH------------HHHhhhccCCEEEccCC
Confidence 88888888 5665543 66788888888888754332221 344554 7888888774
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.84 E-value=3.9e-20 Score=193.44 Aligned_cols=243 Identities=16% Similarity=0.246 Sum_probs=188.1
Q ss_pred ceeEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCC-cccCCCCCCcEeeCCCC
Q 007687 215 NVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELP-VGISDLVSLQHLDLSES 293 (593)
Q Consensus 215 ~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~ 293 (593)
..+.++..+..+..+|... .++++.|++++|.++.++...|.++++|++|+|++|.+..++ ..+.++++|++|+|++|
T Consensus 44 ~~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGI-STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp TSCEEECCSCCCSSCCSCC-CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCCEEEeCCCCcCcCCCCC-CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 3457777888888888642 378999999999999998777999999999999999999875 68999999999999999
Q ss_pred cCcccch-hhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccchhhhcCCCCC
Q 007687 294 DISELPG-ELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELLGLKYL 372 (593)
Q Consensus 294 ~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L 372 (593)
.++.+|. .+..+++|++|++++| .+..+|...+.++++|++|++.++... .......+..+++|
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l--------------~~i~~~~~~~l~~L 187 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRL--------------SYISEGAFEGLSNL 187 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTC--------------CEECTTTTTTCSSC
T ss_pred cCCeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCc--------------ceeCcchhhccccc
Confidence 9999886 5889999999999999 678888877999999999999876543 22222345556666
Q ss_pred ceEEEEecCccchhhhhhcccccccceEEEecccCCCceeeeccccccccccceeeccccccceeeeccCCcccccCCCC
Q 007687 373 EVISFTLRSSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIAECKKLEELKMDYTGEVQQFVFHS 452 (593)
Q Consensus 373 ~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~l~~ 452 (593)
+.|+++.+.. ..+ ..+..+++|++|++++|.. ..+.+..+. .+++
T Consensus 188 ~~L~L~~n~l---------------------------~~~--~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~-----~l~~ 232 (440)
T 3zyj_A 188 RYLNLAMCNL---------------------------REI--PNLTPLIKLDELDLSGNHL-SAIRPGSFQ-----GLMH 232 (440)
T ss_dssp CEEECTTSCC---------------------------SSC--CCCTTCSSCCEEECTTSCC-CEECTTTTT-----TCTT
T ss_pred CeecCCCCcC---------------------------ccc--cccCCCcccCEEECCCCcc-CccChhhhc-----cCcc
Confidence 6655543322 111 2367789999999999964 445555555 3899
Q ss_pred ccEEEEeCCCCCCCCc--ccccCCCCCEEeeccCccchhhcccCcccccccccCCCCCCcccceecccccc
Q 007687 453 LKKVEIVNSYKLKDLT--FLVFAPNLESIEVLGCVAMEEMVSVGKFAAVPEVTANLNPFAKLQYLDLVGAI 521 (593)
Q Consensus 453 L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 521 (593)
|+.|+++++ .++.++ .+..+++|++|+|++|.. +.++. ..+..+++|+.|++++.+
T Consensus 233 L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~-----------~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 233 LQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHNNL-TLLPH-----------DLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CCEEECTTC-CCCEECTTSSTTCTTCCEEECTTSCC-CCCCT-----------TTTSSCTTCCEEECCSSC
T ss_pred CCEEECCCC-ceeEEChhhhcCCCCCCEEECCCCCC-CccCh-----------hHhccccCCCEEEcCCCC
Confidence 999999999 677654 378899999999999843 33322 145678999999998754
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.83 E-value=4.9e-20 Score=193.39 Aligned_cols=242 Identities=19% Similarity=0.228 Sum_probs=187.2
Q ss_pred eeEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCC-cccCCCCCCcEeeCCCCc
Q 007687 216 VRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELP-VGISDLVSLQHLDLSESD 294 (593)
Q Consensus 216 lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~ 294 (593)
.+.++..+..+..+|.. -.+++++|++++|.++.+++..|.++++|++|+|++|.++.++ ..+.++++|++|+|++|.
T Consensus 56 ~~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQG-IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp SCEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CcEEEECCCCcCccCCC-CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 45677778888888764 2368999999999999998777999999999999999999774 689999999999999999
Q ss_pred Ccccchh-hhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccchhhhcCCCCCc
Q 007687 295 ISELPGE-LKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELLGLKYLE 373 (593)
Q Consensus 295 i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~ 373 (593)
++.+|.. +..+++|++|++++| .+..+|...+.++++|++|++.++... .......+..+++|+
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l--------------~~i~~~~~~~l~~L~ 199 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKL--------------EYISEGAFEGLFNLK 199 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTC--------------CEECTTTTTTCTTCC
T ss_pred CCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCc--------------cccChhhccCCCCCC
Confidence 9998865 788999999999999 678888877999999999999986543 222223355566666
Q ss_pred eEEEEecCccchhhhhhcccccccceEEEecccCCCceeeeccccccccccceeeccccccceeeeccCCcccccCCCCc
Q 007687 374 VISFTLRSSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIAECKKLEELKMDYTGEVQQFVFHSL 453 (593)
Q Consensus 374 ~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~l~~L 453 (593)
.|+++.+.. ..+ ..+..+++|++|++++|.... +.+..+. .+++|
T Consensus 200 ~L~L~~n~l---------------------------~~~--~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~-----~l~~L 244 (452)
T 3zyi_A 200 YLNLGMCNI---------------------------KDM--PNLTPLVGLEELEMSGNHFPE-IRPGSFH-----GLSSL 244 (452)
T ss_dssp EEECTTSCC---------------------------SSC--CCCTTCTTCCEEECTTSCCSE-ECGGGGT-----TCTTC
T ss_pred EEECCCCcc---------------------------ccc--ccccccccccEEECcCCcCcc-cCccccc-----CccCC
Confidence 555543321 111 236778899999999987544 4555554 38999
Q ss_pred cEEEEeCCCCCCCCc--ccccCCCCCEEeeccCccchhhcccCcccccccccCCCCCCcccceecccccc
Q 007687 454 KKVEIVNSYKLKDLT--FLVFAPNLESIEVLGCVAMEEMVSVGKFAAVPEVTANLNPFAKLQYLDLVGAI 521 (593)
Q Consensus 454 ~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 521 (593)
+.|+++++ .++.++ .+..+++|++|+|++|. +..++. ..+..+++|+.|++++++
T Consensus 245 ~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-----------~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 245 KKLWVMNS-QVSLIERNAFDGLASLVELNLAHNN-LSSLPH-----------DLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CSCCCT-----------TSSTTCTTCCEEECCSSC
T ss_pred CEEEeCCC-cCceECHHHhcCCCCCCEEECCCCc-CCccCh-----------HHhccccCCCEEEccCCC
Confidence 99999999 666653 37889999999999984 334332 145678999999998754
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.83 E-value=1.9e-19 Score=194.22 Aligned_cols=254 Identities=21% Similarity=0.212 Sum_probs=184.2
Q ss_pred CcEEEEcCCcceecCCCCCCcceeEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCC
Q 007687 194 ENFLVYAGVGLTEAPEVKGWENVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELT 273 (593)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~ 273 (593)
...+.+.++.++.+|.... +++++|++++|.++.+|. .+++|++|++++|.++.+|. .+++|++|++++|.++
T Consensus 42 l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~ 114 (622)
T 3g06_A 42 NAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLT 114 (622)
T ss_dssp CCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSCCCC
T ss_pred CcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCcCC
Confidence 4567888888888886443 789999999999888877 67889999999999888876 5788999999999998
Q ss_pred cCCcccCCCCCCcEeeCCCCcCcccchhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccc
Q 007687 274 ELPVGISDLVSLQHLDLSESDISELPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDS 353 (593)
Q Consensus 274 ~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~ 353 (593)
.+|. .+.+|++|++++|.++.+|.. +++|++|++++| .+..+|. .+++|+.|++.++...
T Consensus 115 ~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~----~~~~L~~L~L~~N~l~--------- 174 (622)
T 3g06_A 115 HLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPA----LPSELCKLWAYNNQLT--------- 174 (622)
T ss_dssp CCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCS---------
T ss_pred CCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCC----ccCCCCEEECCCCCCC---------
Confidence 8886 568899999999999988874 488999999998 6777775 2467888888887654
Q ss_pred cccCCcccchhhhcCCCCCceEEEEecCccchhhhhhcccccccceEEEecccCCCceeeeccccccccccceeeccccc
Q 007687 354 ILFGGGALIVEELLGLKYLEVISFTLRSSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIAECKK 433 (593)
Q Consensus 354 ~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 433 (593)
. +. ..+++|+.|+++.+....++. ...+|+.|+++++. +..++ ..+++|++|++++|..
T Consensus 175 -----~---l~--~~~~~L~~L~Ls~N~l~~l~~------~~~~L~~L~L~~N~-l~~l~----~~~~~L~~L~Ls~N~L 233 (622)
T 3g06_A 175 -----S---LP--MLPSGLQELSVSDNQLASLPT------LPSELYKLWAYNNR-LTSLP----ALPSGLKELIVSGNRL 233 (622)
T ss_dssp -----C---CC--CCCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSC-CSSCC----CCCTTCCEEECCSSCC
T ss_pred -----C---Cc--ccCCCCcEEECCCCCCCCCCC------ccchhhEEECcCCc-ccccC----CCCCCCCEEEccCCcc
Confidence 1 11 345778888887766555442 23477788877763 22222 1236788888887743
Q ss_pred cceeeeccCCcccccCCCCccEEEEeCCCCCCCCcccccCCCCCEEeeccCccchhhcccCcccccccccCCCCCCcccc
Q 007687 434 LEELKMDYTGEVQQFVFHSLKKVEIVNSYKLKDLTFLVFAPNLESIEVLGCVAMEEMVSVGKFAAVPEVTANLNPFAKLQ 513 (593)
Q Consensus 434 ~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~ 513 (593)
.. + + ..+++|+.|++++| .++.+|. .+++|++|++++|. +..++. .+..+++|+
T Consensus 234 ~~-l-p--------~~l~~L~~L~Ls~N-~L~~lp~--~~~~L~~L~Ls~N~-L~~lp~------------~l~~l~~L~ 287 (622)
T 3g06_A 234 TS-L-P--------VLPSELKELMVSGN-RLTSLPM--LPSGLLSLSVYRNQ-LTRLPE------------SLIHLSSET 287 (622)
T ss_dssp SC-C-C--------CCCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSC-CCSCCG------------GGGGSCTTC
T ss_pred Cc-C-C--------CCCCcCcEEECCCC-CCCcCCc--ccccCcEEeCCCCC-CCcCCH------------HHhhccccC
Confidence 32 2 1 13677888888887 6777765 56788888888773 333332 456678888
Q ss_pred eecccccc
Q 007687 514 YLDLVGAI 521 (593)
Q Consensus 514 ~L~l~~c~ 521 (593)
.|++++++
T Consensus 288 ~L~L~~N~ 295 (622)
T 3g06_A 288 TVNLEGNP 295 (622)
T ss_dssp EEECCSCC
T ss_pred EEEecCCC
Confidence 88887754
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.83 E-value=3.8e-20 Score=183.85 Aligned_cols=240 Identities=21% Similarity=0.243 Sum_probs=184.2
Q ss_pred EEEEcCCcceecCCCCCCcceeEEEeeccCccccccc--ccCCcccEEEccCccCccc---chhhhccCCCCcEEEcCCC
Q 007687 196 FLVYAGVGLTEAPEVKGWENVRRISLMDNQITNLSEV--ATCRHLLTLFLNQNKLQMI---HNDFFRFMPSLKVLNLSHA 270 (593)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~l~~~---~~~~~~~l~~Lr~L~L~~~ 270 (593)
.+.+.+..++.+|... .+++++|++++|.+..++.. ..+++|++|++++|.++.+ +.. +..+++|++|++++|
T Consensus 11 ~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLDLSFN 88 (306)
T ss_dssp EEECCSSCCSSCCSCC-CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH-HHSCSCCCEEECCSC
T ss_pred EEEcCCCCcccCCCCC-CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc-cccccccCEEECCCC
Confidence 4666777788888633 37999999999999998874 7899999999999998765 444 678999999999999
Q ss_pred CCCcCCcccCCCCCCcEeeCCCCcCcccch--hhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCC
Q 007687 271 ELTELPVGISDLVSLQHLDLSESDISELPG--ELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDG 348 (593)
Q Consensus 271 ~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~ 348 (593)
.+..+|..+..+++|++|++++|.++.+|. .+..+++|++|++++| .+...+...++.+++|++|++.++...
T Consensus 89 ~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~---- 163 (306)
T 2z66_A 89 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQ---- 163 (306)
T ss_dssp SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS-CCEECSTTTTTTCTTCCEEECTTCEEG----
T ss_pred ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCC-cCCccchhhcccCcCCCEEECCCCccc----
Confidence 999999999999999999999999998874 7899999999999999 455555445899999999999988653
Q ss_pred CCccccccCCcccchhhhcCCCCCceEEEEecCccchhhhhhcccccccceEEEecccCCCceeeeccccccccccceee
Q 007687 349 ASEDSILFGGGALIVEELLGLKYLEVISFTLRSSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRI 428 (593)
Q Consensus 349 ~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 428 (593)
....+..+..+++|+.|+++.+. ........+..+++|++|++
T Consensus 164 ----------~~~~~~~~~~l~~L~~L~Ls~n~---------------------------l~~~~~~~~~~l~~L~~L~L 206 (306)
T 2z66_A 164 ----------ENFLPDIFTELRNLTFLDLSQCQ---------------------------LEQLSPTAFNSLSSLQVLNM 206 (306)
T ss_dssp ----------GGEECSCCTTCTTCCEEECTTSC---------------------------CCEECTTTTTTCTTCCEEEC
T ss_pred ----------cccchhHHhhCcCCCEEECCCCC---------------------------cCCcCHHHhcCCCCCCEEEC
Confidence 22344456666666666554332 22232345677888999999
Q ss_pred ccccccceeeeccCCcccccCCCCccEEEEeCCCCCCCCc--ccccCC-CCCEEeeccCcc
Q 007687 429 AECKKLEELKMDYTGEVQQFVFHSLKKVEIVNSYKLKDLT--FLVFAP-NLESIEVLGCVA 486 (593)
Q Consensus 429 ~~~~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~--~l~~l~-~L~~L~l~~c~~ 486 (593)
++|.... +.+.... .+++|+.|+++++ .++... .+..+| +|++|++++|+.
T Consensus 207 ~~N~l~~-~~~~~~~-----~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 207 SHNNFFS-LDTFPYK-----CLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp TTSCCSB-CCSGGGT-----TCTTCCEEECTTS-CCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred CCCccCc-cChhhcc-----CcccCCEeECCCC-CCcccCHHHHHhhhccCCEEEccCCCe
Confidence 8886443 3332332 3789999999998 555433 366774 899999998864
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.83 E-value=7.7e-21 Score=189.70 Aligned_cols=120 Identities=18% Similarity=0.161 Sum_probs=89.9
Q ss_pred ceeEEEeeccCccccccc--ccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCcccCCCCCCcEeeCCC
Q 007687 215 NVRRISLMDNQITNLSEV--ATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISDLVSLQHLDLSE 292 (593)
Q Consensus 215 ~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~ 292 (593)
+++..+++.+.+...+.. ..+++|++|++++|.++.+++..|..+++|++|+|++|.++.++. +..+++|++|++++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCS
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcC
Confidence 344444555555443322 567788899998888888887778888899999999888887654 88888899999998
Q ss_pred CcCcccchhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCC
Q 007687 293 SDISELPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASH 343 (593)
Q Consensus 293 ~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 343 (593)
|.++.+|. .++|++|++++| .+..++.. .+++|++|++.++..
T Consensus 90 n~l~~l~~----~~~L~~L~l~~n-~l~~~~~~---~~~~L~~L~l~~N~l 132 (317)
T 3o53_A 90 NYVQELLV----GPSIETLHAANN-NISRVSCS---RGQGKKNIYLANNKI 132 (317)
T ss_dssp SEEEEEEE----CTTCCEEECCSS-CCSEEEEC---CCSSCEEEECCSSCC
T ss_pred CccccccC----CCCcCEEECCCC-ccCCcCcc---ccCCCCEEECCCCCC
Confidence 88887763 378888888888 56666643 467888888887765
No 58
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=3.8e-20 Score=184.21 Aligned_cols=243 Identities=16% Similarity=0.153 Sum_probs=186.1
Q ss_pred cEEEEcCCcce---ecC-CCCCCcceeEEEeec-cCccc-cccc-ccCCcccEEEccCccCcccchhhhccCCCCcEEEc
Q 007687 195 NFLVYAGVGLT---EAP-EVKGWENVRRISLMD-NQITN-LSEV-ATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNL 267 (593)
Q Consensus 195 ~~~~~~~~~~~---~~~-~~~~~~~lr~L~l~~-~~~~~-l~~~-~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L 267 (593)
..+.+.+..+. .+| .+..++++++|++++ |.+.. +|.. ..+++|++|++++|.++...+..|.++++|++|++
T Consensus 53 ~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 132 (313)
T 1ogq_A 53 NNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132 (313)
T ss_dssp EEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEEC
T ss_pred EEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeC
Confidence 34555666655 344 567788999999995 87774 5543 88999999999999998444444899999999999
Q ss_pred CCCCCC-cCCcccCCCCCCcEeeCCCCcCc-ccchhhhccc-cCceeeccccccccccchhhcCCCccCceeeccCCCCC
Q 007687 268 SHAELT-ELPVGISDLVSLQHLDLSESDIS-ELPGELKALV-NLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHN 344 (593)
Q Consensus 268 ~~~~l~-~lp~~i~~L~~L~~L~L~~~~i~-~lp~~i~~L~-~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 344 (593)
++|.++ .+|..++.+++|++|++++|.++ .+|..++.++ +|++|++++|.....+|.. ++.++ |++|++.++...
T Consensus 133 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~Ls~N~l~ 210 (313)
T 1ogq_A 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLSRNMLE 210 (313)
T ss_dssp CSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEECCSSEEE
T ss_pred CCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEECcCCccc
Confidence 999998 78999999999999999999998 8999999998 9999999999554577776 88887 999999988752
Q ss_pred CCCCCCccccccCCcccchhhhcCCCCCceEEEEecCccchhhhhhcccccccceEEEecccCCCceeeecccccccccc
Q 007687 345 AFDGASEDSILFGGGALIVEELLGLKYLEVISFTLRSSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLKQLN 424 (593)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 424 (593)
...+..+..+++|+.|+++.+..... ...+..+++|+
T Consensus 211 ---------------~~~~~~~~~l~~L~~L~L~~N~l~~~----------------------------~~~~~~l~~L~ 247 (313)
T 1ogq_A 211 ---------------GDASVLFGSDKNTQKIHLAKNSLAFD----------------------------LGKVGLSKNLN 247 (313)
T ss_dssp ---------------ECCGGGCCTTSCCSEEECCSSEECCB----------------------------GGGCCCCTTCC
T ss_pred ---------------CcCCHHHhcCCCCCEEECCCCceeee----------------------------cCcccccCCCC
Confidence 33455677788888877765433211 11245567888
Q ss_pred ceeeccccccceeeeccCCcccccCCCCccEEEEeCCCCCCCCcccccCCCCCEEeeccCccch
Q 007687 425 RLRIAECKKLEELKMDYTGEVQQFVFHSLKKVEIVNSYKLKDLTFLVFAPNLESIEVLGCVAME 488 (593)
Q Consensus 425 ~L~l~~~~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~ 488 (593)
+|++++|..... .+.+.. .+++|+.|+++++.....+|..+.+++|+.|++.+|+.+-
T Consensus 248 ~L~Ls~N~l~~~-~p~~l~-----~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 248 GLDLRNNRIYGT-LPQGLT-----QLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp EEECCSSCCEEC-CCGGGG-----GCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred EEECcCCcccCc-CChHHh-----cCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCcc
Confidence 888888875433 344444 3788999999888433367767888899999998887543
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=1e-18 Score=188.50 Aligned_cols=257 Identities=18% Similarity=0.156 Sum_probs=199.2
Q ss_pred cceeEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCcccCCCCCCcEeeCCCC
Q 007687 214 ENVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISDLVSLQHLDLSES 293 (593)
Q Consensus 214 ~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~ 293 (593)
.+++.|+++++.++.+|.... ++|++|++++|.++.+|. .+++|++|+|++|.++.+|. .+++|++|++++|
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC
T ss_pred CCCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC
Confidence 358899999999998887533 799999999999998887 47899999999999999986 7789999999999
Q ss_pred cCcccchhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccchhhhcCCCCCc
Q 007687 294 DISELPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELLGLKYLE 373 (593)
Q Consensus 294 ~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~ 373 (593)
.++.+|. .+++|++|++++| .+..+|.. +++|++|++.+|... . .. ..+.+|+
T Consensus 112 ~l~~l~~---~l~~L~~L~L~~N-~l~~lp~~----l~~L~~L~Ls~N~l~--------------~--l~---~~~~~L~ 164 (622)
T 3g06_A 112 PLTHLPA---LPSGLCKLWIFGN-QLTSLPVL----PPGLQELSVSDNQLA--------------S--LP---ALPSELC 164 (622)
T ss_dssp CCCCCCC---CCTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSSCCS--------------C--CC---CCCTTCC
T ss_pred cCCCCCC---CCCCcCEEECCCC-CCCcCCCC----CCCCCEEECcCCcCC--------------C--cC---CccCCCC
Confidence 9999987 6789999999999 67888874 488999999988654 1 11 1246788
Q ss_pred eEEEEecCccchhhhhhcccccccceEEEecccCCCceeeeccccccccccceeeccccccceeeeccCCcccccCCCCc
Q 007687 374 VISFTLRSSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIAECKKLEELKMDYTGEVQQFVFHSL 453 (593)
Q Consensus 374 ~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~l~~L 453 (593)
.|.++.+....++ ....+|+.|+++++. +..++ ..+++|+.|++.+|.... + +. .+++|
T Consensus 165 ~L~L~~N~l~~l~------~~~~~L~~L~Ls~N~-l~~l~----~~~~~L~~L~L~~N~l~~-l-~~--------~~~~L 223 (622)
T 3g06_A 165 KLWAYNNQLTSLP------MLPSGLQELSVSDNQ-LASLP----TLPSELYKLWAYNNRLTS-L-PA--------LPSGL 223 (622)
T ss_dssp EEECCSSCCSCCC------CCCTTCCEEECCSSC-CSCCC----CCCTTCCEEECCSSCCSS-C-CC--------CCTTC
T ss_pred EEECCCCCCCCCc------ccCCCCcEEECCCCC-CCCCC----CccchhhEEECcCCcccc-c-CC--------CCCCC
Confidence 8888877666654 234689999998874 23222 124789999999886433 2 21 26889
Q ss_pred cEEEEeCCCCCCCCcccccCCCCCEEeeccCccchhhcccCcccccccccCCCCCCcccceecccccccCcccCCCCCCC
Q 007687 454 KKVEIVNSYKLKDLTFLVFAPNLESIEVLGCVAMEEMVSVGKFAAVPEVTANLNPFAKLQYLDLVGAINLKSIYWMPLSF 533 (593)
Q Consensus 454 ~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~ 533 (593)
+.|++++| .++.++ ..+++|++|++++|. ++.++ . .+++|+.|+++++ .++.+|.....+
T Consensus 224 ~~L~Ls~N-~L~~lp--~~l~~L~~L~Ls~N~-L~~lp------------~---~~~~L~~L~Ls~N-~L~~lp~~l~~l 283 (622)
T 3g06_A 224 KELIVSGN-RLTSLP--VLPSELKELMVSGNR-LTSLP------------M---LPSGLLSLSVYRN-QLTRLPESLIHL 283 (622)
T ss_dssp CEEECCSS-CCSCCC--CCCTTCCEEECCSSC-CSCCC------------C---CCTTCCEEECCSS-CCCSCCGGGGGS
T ss_pred CEEEccCC-ccCcCC--CCCCcCcEEECCCCC-CCcCC------------c---ccccCcEEeCCCC-CCCcCCHHHhhc
Confidence 99999998 788777 667899999999983 33321 1 5688999999986 777888777789
Q ss_pred CccceeeeccCcC
Q 007687 534 PLLKYLRAMNCHK 546 (593)
Q Consensus 534 ~~L~~L~i~~C~~ 546 (593)
++|+.|++.+++-
T Consensus 284 ~~L~~L~L~~N~l 296 (622)
T 3g06_A 284 SSETTVNLEGNPL 296 (622)
T ss_dssp CTTCEEECCSCCC
T ss_pred cccCEEEecCCCC
Confidence 9999999998863
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.81 E-value=5e-19 Score=173.77 Aligned_cols=220 Identities=19% Similarity=0.218 Sum_probs=136.5
Q ss_pred eEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcC-CcccCCCCCCcEeeCCCCc-
Q 007687 217 RRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTEL-PVGISDLVSLQHLDLSESD- 294 (593)
Q Consensus 217 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~- 294 (593)
+.++..++.+..+|.. ..++|++|++++|.++.++...|..+++|++|++++|.++.+ |..++.+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVG-IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCTT-CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCcC-CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 4455555555555532 245667777777776666665566777777777777766655 5566777777777777774
Q ss_pred Cccc-chhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccchhhhcCCCCCc
Q 007687 295 ISEL-PGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELLGLKYLE 373 (593)
Q Consensus 295 i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~ 373 (593)
++.+ |..+..+++|++|++++| .+..++...++++++|++|++.++... ......++.+++|+
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~---------------~~~~~~~~~l~~L~ 156 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNALQ---------------ALPDDTFRDLGNLT 156 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCC---------------CCCTTTTTTCTTCC
T ss_pred ccccCHHHhcCCcCCCEEECCCC-cCCEECHhHhhCCcCCCEEECCCCccc---------------ccCHhHhccCCCcc
Confidence 6665 455666777777777776 455554444666777777777666542 11112234444444
Q ss_pred eEEEEecCccchhhhhhcccccccceEEEecccCCCceeeeccccccccccceeeccccccceeeeccCCcccccCCCCc
Q 007687 374 VISFTLRSSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIAECKKLEELKMDYTGEVQQFVFHSL 453 (593)
Q Consensus 374 ~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~l~~L 453 (593)
.|+++.+. ...++...+..+++|++|++++|.... +.+.+.. .+++|
T Consensus 157 ~L~l~~n~---------------------------l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~-----~l~~L 203 (285)
T 1ozn_A 157 HLFLHGNR---------------------------ISSVPERAFRGLHSLDRLLLHQNRVAH-VHPHAFR-----DLGRL 203 (285)
T ss_dssp EEECCSSC---------------------------CCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTT-----TCTTC
T ss_pred EEECCCCc---------------------------ccccCHHHhcCccccCEEECCCCcccc-cCHhHcc-----Ccccc
Confidence 44443221 122222346667788888888876433 3444444 37888
Q ss_pred cEEEEeCCCCCCCCcc--cccCCCCCEEeeccCccc
Q 007687 454 KKVEIVNSYKLKDLTF--LVFAPNLESIEVLGCVAM 487 (593)
Q Consensus 454 ~~L~l~~c~~l~~l~~--l~~l~~L~~L~l~~c~~l 487 (593)
+.|+++++ .++.++. +..+++|++|++++|+..
T Consensus 204 ~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 204 MTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred cEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCcc
Confidence 88988888 6666664 778889999999888653
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.80 E-value=2.3e-19 Score=176.20 Aligned_cols=218 Identities=23% Similarity=0.319 Sum_probs=168.6
Q ss_pred cEEEEcCCcceecCCCCCCcceeEEEeeccCcccccc--cccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCC-
Q 007687 195 NFLVYAGVGLTEAPEVKGWENVRRISLMDNQITNLSE--VATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAE- 271 (593)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~- 271 (593)
..+.+.+..+..+|.. ..+++++|++++|.+..++. +..+++|++|++++|.++.+++..|..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVG-IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCTT-CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCcC-CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 3456667777778753 34799999999999999875 4889999999999999999877679999999999999997
Q ss_pred CCcC-CcccCCCCCCcEeeCCCCcCccc-chhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCC
Q 007687 272 LTEL-PVGISDLVSLQHLDLSESDISEL-PGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGA 349 (593)
Q Consensus 272 l~~l-p~~i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~ 349 (593)
+..+ |..+..+++|++|++++|.++.+ |..+.++++|++|++++| .+..+|...++.+++|++|++.++...
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~----- 166 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRIS----- 166 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC-----
T ss_pred ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCccc-----
Confidence 8888 77899999999999999999987 466889999999999999 677888766899999999999988653
Q ss_pred CccccccCCcccchhhhcCCCCCceEEEEecCccchhhhhhcccccccceEEEecccCCCceeeeccccccccccceeec
Q 007687 350 SEDSILFGGGALIVEELLGLKYLEVISFTLRSSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIA 429 (593)
Q Consensus 350 ~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 429 (593)
......+..+++|+.|+++.+.. .......+..+++|+.|+++
T Consensus 167 ----------~~~~~~~~~l~~L~~L~l~~n~l---------------------------~~~~~~~~~~l~~L~~L~l~ 209 (285)
T 1ozn_A 167 ----------SVPERAFRGLHSLDRLLLHQNRV---------------------------AHVHPHAFRDLGRLMTLYLF 209 (285)
T ss_dssp ----------EECTTTTTTCTTCCEEECCSSCC---------------------------CEECTTTTTTCTTCCEEECC
T ss_pred ----------ccCHHHhcCccccCEEECCCCcc---------------------------cccCHhHccCcccccEeeCC
Confidence 11222355666666666654332 22222456667788888888
Q ss_pred cccccceeeeccCCcccccCCCCccEEEEeCCC
Q 007687 430 ECKKLEELKMDYTGEVQQFVFHSLKKVEIVNSY 462 (593)
Q Consensus 430 ~~~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 462 (593)
+|.... +.+.... .+++|+.|++++++
T Consensus 210 ~n~l~~-~~~~~~~-----~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 210 ANNLSA-LPTEALA-----PLRALQYLRLNDNP 236 (285)
T ss_dssp SSCCSC-CCHHHHT-----TCTTCCEEECCSSC
T ss_pred CCcCCc-CCHHHcc-----cCcccCEEeccCCC
Confidence 875433 3333333 37788888888874
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.78 E-value=9.5e-20 Score=181.74 Aligned_cols=266 Identities=15% Similarity=0.097 Sum_probs=198.8
Q ss_pred cccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCC-cccCCCCCCcEeeCCCCcCcccchhhhccccCceeeccc
Q 007687 237 HLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELP-VGISDLVSLQHLDLSESDISELPGELKALVNLKCLNLEW 315 (593)
Q Consensus 237 ~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~ 315 (593)
.++..+++.+.+...+...+..+++|++|+|++|.++.++ ..++.+++|++|++++|.++.+++ +..+++|++|++++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCS
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcC
Confidence 4566677777777777777888899999999999999885 689999999999999999997776 89999999999999
Q ss_pred cccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccchhhhcCCCCCceEEEEecCccchhhhhhccccc
Q 007687 316 TRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELLGLKYLEVISFTLRSSHGLQSVLSSHKLR 395 (593)
Q Consensus 316 ~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~~~ 395 (593)
| .++.+|. .++|++|++.++... . .. ...+++|+.|.++.+........ .....
T Consensus 90 n-~l~~l~~-----~~~L~~L~l~~n~l~--------------~-~~---~~~~~~L~~L~l~~N~l~~~~~~--~~~~l 143 (317)
T 3o53_A 90 N-YVQELLV-----GPSIETLHAANNNIS--------------R-VS---CSRGQGKKNIYLANNKITMLRDL--DEGCR 143 (317)
T ss_dssp S-EEEEEEE-----CTTCCEEECCSSCCS--------------E-EE---ECCCSSCEEEECCSSCCCSGGGB--CTGGG
T ss_pred C-ccccccC-----CCCcCEEECCCCccC--------------C-cC---ccccCCCCEEECCCCCCCCccch--hhhcc
Confidence 9 5666654 489999999988764 1 11 12367799999987776655321 12234
Q ss_pred ccceEEEecccCCCceeeeccc-cccccccceeeccccccceeeeccCCcccccCCCCccEEEEeCCCCCCCCc-ccccC
Q 007687 396 CCTRALLLQCFNDSTSLEVSAL-ADLKQLNRLRIAECKKLEELKMDYTGEVQQFVFHSLKKVEIVNSYKLKDLT-FLVFA 473 (593)
Q Consensus 396 ~~L~~L~l~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~l~~l 473 (593)
++|+.|+++++. ........+ ..+++|++|++++|.... + +... .+++|+.|+++++ .++.++ .+..+
T Consensus 144 ~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~-~~~~------~l~~L~~L~Ls~N-~l~~l~~~~~~l 213 (317)
T 3o53_A 144 SRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYD-V-KGQV------VFAKLKTLDLSSN-KLAFMGPEFQSA 213 (317)
T ss_dssp SSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCCE-E-ECCC------CCTTCCEEECCSS-CCCEECGGGGGG
T ss_pred CCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCcCcc-c-cccc------ccccCCEEECCCC-cCCcchhhhccc
Confidence 589999999874 344443444 467899999999887443 3 2222 3789999999998 666654 47888
Q ss_pred CCCCEEeeccCccchhhcccCcccccccccCCCCCCcccceecccccccC-cccCCCCCCCCccceeeeccCcCCCCCCC
Q 007687 474 PNLESIEVLGCVAMEEMVSVGKFAAVPEVTANLNPFAKLQYLDLVGAINL-KSIYWMPLSFPLLKYLRAMNCHKLKKLPF 552 (593)
Q Consensus 474 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L-~~l~~~~~~~~~L~~L~i~~C~~L~~lP~ 552 (593)
++|++|++++|.. +.++. .+..+++|+.|++++++-. ..++.....++.|+.|++.+|+.++..+.
T Consensus 214 ~~L~~L~L~~N~l-~~l~~------------~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 214 AGVTWISLRNNKL-VLIEK------------ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp TTCSEEECTTSCC-CEECT------------TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred CcccEEECcCCcc-cchhh------------HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 9999999999843 33332 5667899999999986543 24444455688999999988887776543
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.78 E-value=1e-19 Score=181.04 Aligned_cols=242 Identities=15% Similarity=0.120 Sum_probs=155.1
Q ss_pred cceeEEEeeccCccccccc-ccCCcccEEEccCccCcc--cchhhhc-------cCCCCcEEEcCCCCCC-cCCccc--C
Q 007687 214 ENVRRISLMDNQITNLSEV-ATCRHLLTLFLNQNKLQM--IHNDFFR-------FMPSLKVLNLSHAELT-ELPVGI--S 280 (593)
Q Consensus 214 ~~lr~L~l~~~~~~~l~~~-~~~~~Lr~L~l~~~~l~~--~~~~~~~-------~l~~Lr~L~L~~~~l~-~lp~~i--~ 280 (593)
++++.+++.+|.+ .+|.. ... |+.|++++|.++. ++.. +. ++++|++|+|++|.++ .+|..+ +
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSR-ILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHH-HHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHH-HHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 4567777777777 55653 222 8889999988754 4544 33 6899999999999998 678876 8
Q ss_pred CCCCCcEeeCCCCcCcccchhhhcc-----ccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccc
Q 007687 281 DLVSLQHLDLSESDISELPGELKAL-----VNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSIL 355 (593)
Q Consensus 281 ~L~~L~~L~L~~~~i~~lp~~i~~L-----~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 355 (593)
.+++|++|++++|.++.+|..++.+ ++|++|++++| .+..+|...++++++|++|+++++...
T Consensus 119 ~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~----------- 186 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDLSDNPEL----------- 186 (312)
T ss_dssp CSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCCCSSCCEEECCSCTTC-----------
T ss_pred cCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhccCCCCCEEECCCCCcC-----------
Confidence 9999999999999999889888888 99999999999 577777555999999999999988743
Q ss_pred cCCc-ccchhhh--cCCCCCceEEEEecCccchhhhhhcc-cccccceEEEecccCCCceeeeccccccccccceeeccc
Q 007687 356 FGGG-ALIVEEL--LGLKYLEVISFTLRSSHGLQSVLSSH-KLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIAEC 431 (593)
Q Consensus 356 ~~~~-~~~~~~L--~~l~~L~~L~i~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 431 (593)
+ ...+..+ +.+++|+.|+++.+....++...... ...++|+.|+++++.-....+...+..+++|++|++++|
T Consensus 187 ---~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N 263 (312)
T 1wwl_A 187 ---GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT 263 (312)
T ss_dssp ---HHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS
T ss_pred ---cchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC
Confidence 1 1123344 77788888888776665443322111 122355555555553222222223333455555555555
Q ss_pred cccceeeeccCCcccccCCCCccEEEEeCCCCCCCCcccccCCCCCEEeeccC
Q 007687 432 KKLEELKMDYTGEVQQFVFHSLKKVEIVNSYKLKDLTFLVFAPNLESIEVLGC 484 (593)
Q Consensus 432 ~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c 484 (593)
... .+ +.+ .+++|+.|+++++ .++.+|.+..+++|++|++++|
T Consensus 264 ~l~-~i-p~~-------~~~~L~~L~Ls~N-~l~~~p~~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 264 GLK-QV-PKG-------LPAKLSVLDLSYN-RLDRNPSPDELPQVGNLSLKGN 306 (312)
T ss_dssp CCS-SC-CSS-------CCSEEEEEECCSS-CCCSCCCTTTSCEEEEEECTTC
T ss_pred ccC-hh-hhh-------ccCCceEEECCCC-CCCCChhHhhCCCCCEEeccCC
Confidence 422 11 111 1145555555555 4444444445555555555544
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=4.6e-19 Score=187.20 Aligned_cols=237 Identities=17% Similarity=0.121 Sum_probs=131.3
Q ss_pred cCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCcccCCCCCCcEeeCCCCcCcccchhhhccccCceeec
Q 007687 234 TCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISDLVSLQHLDLSESDISELPGELKALVNLKCLNL 313 (593)
Q Consensus 234 ~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l 313 (593)
.+++|++|++++|.++.+++..|..+++|++|+|++|.++..+. ++.+++|++|++++|.++.+|.. ++|++|++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L 106 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVG----PSIETLHA 106 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEEC----TTCCEEEC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCC----CCcCEEEC
Confidence 34466666666666666655556666666666666666665443 66666666666666666665532 56666666
Q ss_pred cccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccchhhhcCCCCCceEEEEecCccchh-hhhhcc
Q 007687 314 EWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELLGLKYLEVISFTLRSSHGLQ-SVLSSH 392 (593)
Q Consensus 314 ~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~-~~~~~~ 392 (593)
++| .+..+|.. .+++|++|++.++... ......++.+++|+.|+++.+...... ..+ .
T Consensus 107 ~~N-~l~~~~~~---~l~~L~~L~L~~N~l~---------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l--~ 165 (487)
T 3oja_A 107 ANN-NISRVSCS---RGQGKKNIYLANNKIT---------------MLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL--A 165 (487)
T ss_dssp CSS-CCCCEEEC---CCSSCEEEECCSSCCC---------------SGGGBCGGGGSSEEEEECTTSCCCEEEGGGG--G
T ss_pred cCC-cCCCCCcc---ccCCCCEEECCCCCCC---------------CCCchhhcCCCCCCEEECCCCCCCCcChHHH--h
Confidence 666 44444432 3566666666666542 122334455566666666544433211 000 0
Q ss_pred cccccceEEEecccCCCceeeeccccccccccceeeccccccceeeeccCCcccccCCCCccEEEEeCCCCCCCCcc-cc
Q 007687 393 KLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIAECKKLEELKMDYTGEVQQFVFHSLKKVEIVNSYKLKDLTF-LV 471 (593)
Q Consensus 393 ~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-l~ 471 (593)
...++|+.|+++++.- ... .....+++|++|++++|.... +++.+ . .+++|+.|+++++ .++.+|. ++
T Consensus 166 ~~l~~L~~L~Ls~N~l-~~~--~~~~~l~~L~~L~Ls~N~l~~-~~~~~-~-----~l~~L~~L~Ls~N-~l~~lp~~l~ 234 (487)
T 3oja_A 166 ASSDTLEHLNLQYNFI-YDV--KGQVVFAKLKTLDLSSNKLAF-MGPEF-Q-----SAAGVTWISLRNN-KLVLIEKALR 234 (487)
T ss_dssp GGTTTCCEEECTTSCC-CEE--ECCCCCTTCCEEECCSSCCCE-ECGGG-G-----GGTTCSEEECTTS-CCCEECTTCC
T ss_pred hhCCcccEEecCCCcc-ccc--cccccCCCCCEEECCCCCCCC-CCHhH-c-----CCCCccEEEecCC-cCcccchhhc
Confidence 1123556666665532 222 123346777777777765433 33332 2 2677777777776 5555443 66
Q ss_pred cCCCCCEEeeccCccc-hhhcccCcccccccccCCCCCCcccceecccc
Q 007687 472 FAPNLESIEVLGCVAM-EEMVSVGKFAAVPEVTANLNPFAKLQYLDLVG 519 (593)
Q Consensus 472 ~l~~L~~L~l~~c~~l-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 519 (593)
.+++|+.|++++|+.. ..++. .+..+++|+.|.+..
T Consensus 235 ~l~~L~~L~l~~N~l~c~~~~~------------~~~~l~~L~~l~~~~ 271 (487)
T 3oja_A 235 FSQNLEHFDLRGNGFHCGTLRD------------FFSKNQRVQTVAKQT 271 (487)
T ss_dssp CCTTCCEEECTTCCBCHHHHHH------------HHTTCHHHHHHHHHH
T ss_pred cCCCCCEEEcCCCCCcCcchHH------------HHHhCCCCcEEeccc
Confidence 6777777777777554 12211 234566666666653
No 65
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.77 E-value=4.2e-18 Score=162.53 Aligned_cols=135 Identities=13% Similarity=0.297 Sum_probs=73.8
Q ss_pred ceecCCCCCCcceeEEEeeccCcccccc--cccCCcccEEEccCcc-CcccchhhhccCCCCcEEEcCC-CCCCcCC-cc
Q 007687 204 LTEAPEVKGWENVRRISLMDNQITNLSE--VATCRHLLTLFLNQNK-LQMIHNDFFRFMPSLKVLNLSH-AELTELP-VG 278 (593)
Q Consensus 204 ~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~-l~~~~~~~~~~l~~Lr~L~L~~-~~l~~lp-~~ 278 (593)
++.+|. ..+++++|++++|.++.++. +..+++|++|++++|. ++.+++..|.++++|++|++++ +.++.+| ..
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 444444 22356666666666655554 2455566666666664 5555554455566666666665 5555554 24
Q ss_pred cCCCCCCcEeeCCCCcCcccchhhhccccCc---eeeccccccccccchhhcCCCccCc-eeeccCC
Q 007687 279 ISDLVSLQHLDLSESDISELPGELKALVNLK---CLNLEWTRNLITIPRQLISNLSRLH-VLRMFGA 341 (593)
Q Consensus 279 i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~---~L~l~~~~~l~~lp~~~i~~l~~L~-~L~l~~~ 341 (593)
+..+++|++|++++|.++.+|. +..+++|+ +|++++|..++.+|...+.++++|+ +|++.++
T Consensus 101 f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n 166 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166 (239)
T ss_dssp EECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC
T ss_pred hCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC
Confidence 5555566666666665555554 55555555 5565555444555544455555555 5555543
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=3.1e-18 Score=180.81 Aligned_cols=237 Identities=16% Similarity=0.118 Sum_probs=170.5
Q ss_pred CCCCcEEEcCCCCCCcC-CcccCCCCCCcEeeCCCCcCcccchhhhccccCceeeccccccccccchhhcCCCccCceee
Q 007687 259 MPSLKVLNLSHAELTEL-PVGISDLVSLQHLDLSESDISELPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLR 337 (593)
Q Consensus 259 l~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~ 337 (593)
+++|++|+|++|.++.+ |..++.+++|++|+|++|.++.+++ ++.+++|++|++++| .+..+|. .++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~-----~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELLV-----GPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSS-EEEEEEE-----CTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCC-cCCCCCC-----CCCcCEEE
Confidence 34899999999999987 4689999999999999999997766 999999999999999 6777664 38999999
Q ss_pred ccCCCCCCCCCCCccccccCCcccchhhhcCCCCCceEEEEecCccchhhhhhcccccccceEEEecccCCCceeeeccc
Q 007687 338 MFGASHNAFDGASEDSILFGGGALIVEELLGLKYLEVISFTLRSSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSAL 417 (593)
Q Consensus 338 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l 417 (593)
+.++... . ... ..+++|+.|+++.+........ .....++|+.|+++++.- .......+
T Consensus 106 L~~N~l~--------------~-~~~---~~l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l-~~~~~~~l 164 (487)
T 3oja_A 106 AANNNIS--------------R-VSC---SRGQGKKNIYLANNKITMLRDL--DEGCRSRVQYLDLKLNEI-DTVNFAEL 164 (487)
T ss_dssp CCSSCCC--------------C-EEE---CCCSSCEEEECCSSCCCSGGGB--CGGGGSSEEEEECTTSCC-CEEEGGGG
T ss_pred CcCCcCC--------------C-CCc---cccCCCCEEECCCCCCCCCCch--hhcCCCCCCEEECCCCCC-CCcChHHH
Confidence 9998764 1 111 2357788898887766554321 122345888889888743 33333455
Q ss_pred c-ccccccceeeccccccceeeeccCCcccccCCCCccEEEEeCCCCCCCCc-ccccCCCCCEEeeccCccchhhcccCc
Q 007687 418 A-DLKQLNRLRIAECKKLEELKMDYTGEVQQFVFHSLKKVEIVNSYKLKDLT-FLVFAPNLESIEVLGCVAMEEMVSVGK 495 (593)
Q Consensus 418 ~-~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~~~~~~~ 495 (593)
. .+++|++|++++|.... + +... .+++|+.|+++++ .++.++ .++.+++|+.|++++|... .++
T Consensus 165 ~~~l~~L~~L~Ls~N~l~~-~-~~~~------~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N~l~-~lp---- 230 (487)
T 3oja_A 165 AASSDTLEHLNLQYNFIYD-V-KGQV------VFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKLV-LIE---- 230 (487)
T ss_dssp GGGTTTCCEEECTTSCCCE-E-ECCC------CCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSCCC-EEC----
T ss_pred hhhCCcccEEecCCCcccc-c-cccc------cCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCCcCc-ccc----
Confidence 4 67889999998887443 2 2222 3788999999888 566654 4778888999999887532 232
Q ss_pred ccccccccCCCCCCcccceecccccccC-cccCCCCCCCCccceeeeccCc
Q 007687 496 FAAVPEVTANLNPFAKLQYLDLVGAINL-KSIYWMPLSFPLLKYLRAMNCH 545 (593)
Q Consensus 496 ~~~~~~~~~~~~~~~~L~~L~l~~c~~L-~~l~~~~~~~~~L~~L~i~~C~ 545 (593)
..+..+++|+.|++++++-. ..++.....++.|+.+.+..+.
T Consensus 231 --------~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~ 273 (487)
T 3oja_A 231 --------KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273 (487)
T ss_dssp --------TTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --------hhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccc
Confidence 24567788899998886543 2343334557778877776433
No 67
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.76 E-value=5.1e-18 Score=168.34 Aligned_cols=121 Identities=24% Similarity=0.414 Sum_probs=56.0
Q ss_pred cceeEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCcccCCCCCCcEeeCCCC
Q 007687 214 ENVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISDLVSLQHLDLSES 293 (593)
Q Consensus 214 ~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~ 293 (593)
+++++|++.++.+..++....+++|++|++++|.++.+++ +..+++|++|++++|.++.+| .+..+++|++|++++|
T Consensus 41 ~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n 117 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTST 117 (308)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTS
T ss_pred CCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCC
Confidence 3444555554444444444444444444444444444443 444444444444444444443 3444444444444444
Q ss_pred cCcccchhhhccccCceeeccccccccccchhhcCCCccCceeeccCC
Q 007687 294 DISELPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGA 341 (593)
Q Consensus 294 ~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~ 341 (593)
.++.+|. +..+++|++|++++| .+..+|. ++.+++|++|++.++
T Consensus 118 ~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n 161 (308)
T 1h6u_A 118 QITDVTP-LAGLSNLQVLYLDLN-QITNISP--LAGLTNLQYLSIGNA 161 (308)
T ss_dssp CCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSS
T ss_pred CCCCchh-hcCCCCCCEEECCCC-ccCcCcc--ccCCCCccEEEccCC
Confidence 4444433 444444444444444 3333333 444444444444433
No 68
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.75 E-value=1.3e-17 Score=163.78 Aligned_cols=129 Identities=26% Similarity=0.290 Sum_probs=109.3
Q ss_pred CCcceeEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCcccCCCCCCcEeeCC
Q 007687 212 GWENVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISDLVSLQHLDLS 291 (593)
Q Consensus 212 ~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~ 291 (593)
.+++++.+++.++.++.+|... .+++++|++++|.++.+++..|..+++|++|+|++|.++.+|.. +.+++|++|+++
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls 85 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLS 85 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECC
T ss_pred ccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECC
Confidence 4568888999998888887643 36889999999999888877789999999999999999888654 788999999999
Q ss_pred CCcCcccchhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCC
Q 007687 292 ESDISELPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASH 343 (593)
Q Consensus 292 ~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 343 (593)
+|.++.+|..+..+++|++|++++| .++.+|.+.+.++++|++|++.++..
T Consensus 86 ~N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l 136 (290)
T 1p9a_G 86 HNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNEL 136 (290)
T ss_dssp SSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCC
T ss_pred CCcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCC
Confidence 9999999988889999999999998 67788766688899999999887764
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.75 E-value=1.9e-17 Score=161.68 Aligned_cols=143 Identities=22% Similarity=0.296 Sum_probs=77.3
Q ss_pred EEEcCCcceecCCCCCCcceeEEEeeccCcccccc--cccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCc
Q 007687 197 LVYAGVGLTEAPEVKGWENVRRISLMDNQITNLSE--VATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTE 274 (593)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~ 274 (593)
+.+.+..+..+|.... +++++|++++|.+..++. +..+++|++|++++|.++.+++..|.++++|++|++++|.++.
T Consensus 12 ~~c~~~~l~~ip~~l~-~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 90 (276)
T 2z62_A 12 YQCMELNFYKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90 (276)
T ss_dssp EECTTSCCSSCCSSSC-TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred EEecCCCccccCCCCC-CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc
Confidence 3344444555554221 356666666666555543 2555566666666666555555445556666666666665554
Q ss_pred CC-cccCCCCCCcEeeCCCCcCcccch-hhhccccCceeeccccccccc--cchhhcCCCccCceeeccCCC
Q 007687 275 LP-VGISDLVSLQHLDLSESDISELPG-ELKALVNLKCLNLEWTRNLIT--IPRQLISNLSRLHVLRMFGAS 342 (593)
Q Consensus 275 lp-~~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~--lp~~~i~~l~~L~~L~l~~~~ 342 (593)
++ ..+.++++|++|++++|.++.++. .++.+++|++|++++| .+.. +|.. ++++++|++|++.++.
T Consensus 91 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~-~~~l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNK 160 (276)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECCSSC
T ss_pred cChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCC-ccceecCchh-hccCCCCCEEECCCCC
Confidence 43 345556666666666665555543 3555556666666655 3333 3443 5555555555555544
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.74 E-value=2.9e-17 Score=159.75 Aligned_cols=127 Identities=24% Similarity=0.376 Sum_probs=83.0
Q ss_pred ceeEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCcc-cCCCCCCcEeeCCCC
Q 007687 215 NVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVG-ISDLVSLQHLDLSES 293 (593)
Q Consensus 215 ~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~ 293 (593)
..+.++++++.++.+|... .++++.|++++|.++.++...|.++++|++|++++|.++.+|.. +..+++|++|++++|
T Consensus 17 ~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 3456666666666665432 24677777777777776665567777777777777777766553 466777777777777
Q ss_pred cCcccch-hhhccccCceeeccccccccccchhhcCCCccCceeeccCCCC
Q 007687 294 DISELPG-ELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASH 343 (593)
Q Consensus 294 ~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 343 (593)
.++.+|. .+..+++|++|++++| .+..+|...++.+++|++|++.++..
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l 145 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNEL 145 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cCCcCCHhHcccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCCcC
Confidence 7776664 3466777777777776 45556555466677777777665543
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.74 E-value=1.2e-17 Score=163.04 Aligned_cols=220 Identities=20% Similarity=0.165 Sum_probs=164.7
Q ss_pred EEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCc-ccCCCCCCcEeeCCCCcCcc
Q 007687 219 ISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPV-GISDLVSLQHLDLSESDISE 297 (593)
Q Consensus 219 L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~ 297 (593)
++..+..+..+|... .++|++|++++|.++.++...|.++++|++|++++|.++.++. .+.++++|++|++++|.++.
T Consensus 12 ~~c~~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 90 (276)
T 2z62_A 12 YQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90 (276)
T ss_dssp EECTTSCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred EEecCCCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc
Confidence 344455566666532 3579999999999999988779999999999999999998854 79999999999999999998
Q ss_pred cc-hhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccchhhhcCCCCCceEE
Q 007687 298 LP-GELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELLGLKYLEVIS 376 (593)
Q Consensus 298 lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~ 376 (593)
++ ..+.++++|++|++++| .+..++...++++++|++|++.++... ....+..++.+++|+.|+
T Consensus 91 ~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~--------------~~~l~~~~~~l~~L~~L~ 155 (276)
T 2z62_A 91 LALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQ--------------SFKLPEYFSNLTNLEHLD 155 (276)
T ss_dssp ECTTTTTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCC--------------CCCCCGGGGGCTTCCEEE
T ss_pred cChhhhcCCccccEEECCCC-CccccCchhcccCCCCCEEECcCCccc--------------eecCchhhccCCCCCEEE
Confidence 77 66899999999999999 677776645899999999999998764 223466788899999999
Q ss_pred EEecCccchhh-hhhcccccccce-EEEecccCCCceeeeccccccccccceeeccccccceeeeccCCcccccCCCCcc
Q 007687 377 FTLRSSHGLQS-VLSSHKLRCCTR-ALLLQCFNDSTSLEVSALADLKQLNRLRIAECKKLEELKMDYTGEVQQFVFHSLK 454 (593)
Q Consensus 377 i~~~~~~~~~~-~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~l~~L~ 454 (593)
++.+....+.. .+........+. .|+++++. ...++...+ ...+|++|++++|.. +.+++.... .+++|+
T Consensus 156 Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~-l~~~~~~~~-~~~~L~~L~L~~n~l-~~~~~~~~~-----~l~~L~ 227 (276)
T 2z62_A 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAF-KEIRLKELALDTNQL-KSVPDGIFD-----RLTSLQ 227 (276)
T ss_dssp CCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC-CCEECTTSS-CSCCEEEEECCSSCC-SCCCTTTTT-----TCCSCC
T ss_pred CCCCCCCcCCHHHhhhhhhccccceeeecCCCc-ccccCcccc-CCCcccEEECCCCce-eecCHhHhc-----cccccc
Confidence 99876655421 111111112222 78888774 334442223 334899999999874 444444333 389999
Q ss_pred EEEEeCCC
Q 007687 455 KVEIVNSY 462 (593)
Q Consensus 455 ~L~l~~c~ 462 (593)
.|++++++
T Consensus 228 ~L~l~~N~ 235 (276)
T 2z62_A 228 KIWLHTNP 235 (276)
T ss_dssp EEECCSSC
T ss_pred EEEccCCc
Confidence 99999884
No 72
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.74 E-value=1.1e-17 Score=165.83 Aligned_cols=198 Identities=19% Similarity=0.227 Sum_probs=129.2
Q ss_pred ccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCcccCCCCCCcEeeCCCCcCcccchhhhccccCce
Q 007687 231 EVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISDLVSLQHLDLSESDISELPGELKALVNLKC 310 (593)
Q Consensus 231 ~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~ 310 (593)
....+++|++|+++++.++.++. +..+++|++|++++|.+..+|. +..+++|++|++++|.++.+| .+..+++|++
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~l~~--~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~ 111 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKT 111 (308)
T ss_dssp CHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCE
T ss_pred cHHHcCCcCEEEeeCCCccCchh--hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCE
Confidence 33556777777777777777663 6777777777777777777765 777777777777777777765 4777777777
Q ss_pred eeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccchhhhcCCCCCceEEEEecCccchhhhhh
Q 007687 311 LNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELLGLKYLEVISFTLRSSHGLQSVLS 390 (593)
Q Consensus 311 L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~ 390 (593)
|++++| .+..+|. +..+++|++|++.++... .+..+..+++|+.|+++.+....++.
T Consensus 112 L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~-----------------~~~~l~~l~~L~~L~l~~n~l~~~~~--- 168 (308)
T 1h6u_A 112 LDLTST-QITDVTP--LAGLSNLQVLYLDLNQIT-----------------NISPLAGLTNLQYLSIGNAQVSDLTP--- 168 (308)
T ss_dssp EECTTS-CCCCCGG--GTTCTTCCEEECCSSCCC-----------------CCGGGGGCTTCCEEECCSSCCCCCGG---
T ss_pred EECCCC-CCCCchh--hcCCCCCCEEECCCCccC-----------------cCccccCCCCccEEEccCCcCCCChh---
Confidence 777777 5666665 677777777777776543 11226667777777777665554443
Q ss_pred cccccccceEEEecccCCCceeeeccccccccccceeeccccccceeeeccCCcccccCCCCccEEEEeCCCCCCCCc
Q 007687 391 SHKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIAECKKLEELKMDYTGEVQQFVFHSLKKVEIVNSYKLKDLT 468 (593)
Q Consensus 391 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~ 468 (593)
....++|+.|+++++.- ..++ .+..+++|++|++++|.... +. . . ..+++|+.|+++++ .++..+
T Consensus 169 -l~~l~~L~~L~l~~n~l-~~~~--~l~~l~~L~~L~L~~N~l~~-~~-~-l-----~~l~~L~~L~l~~N-~i~~~~ 233 (308)
T 1h6u_A 169 -LANLSKLTTLKADDNKI-SDIS--PLASLPNLIEVHLKNNQISD-VS-P-L-----ANTSNLFIVTLTNQ-TITNQP 233 (308)
T ss_dssp -GTTCTTCCEEECCSSCC-CCCG--GGGGCTTCCEEECTTSCCCB-CG-G-G-----TTCTTCCEEEEEEE-EEECCC
T ss_pred -hcCCCCCCEEECCCCcc-CcCh--hhcCCCCCCEEEccCCccCc-cc-c-c-----cCCCCCCEEEccCC-eeecCC
Confidence 22334677777777642 2222 26667778888887775433 21 1 1 23777888888777 344443
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.74 E-value=3.1e-17 Score=159.56 Aligned_cols=195 Identities=23% Similarity=0.398 Sum_probs=155.8
Q ss_pred CcEEEEcCCcceecCCCCCCcceeEEEeeccCcccccc--cccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCC
Q 007687 194 ENFLVYAGVGLTEAPEVKGWENVRRISLMDNQITNLSE--VATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAE 271 (593)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~ 271 (593)
...+.+.+..++.+|.... +++++|++++|.+..++. +..+++|++|++++|.++.++...|..+++|++|++++|.
T Consensus 18 ~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~ 96 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCEEEccCCCCCccCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc
Confidence 3567778888888885333 689999999999999886 4889999999999999999999888999999999999999
Q ss_pred CCcCCc-ccCCCCCCcEeeCCCCcCcccch-hhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCC
Q 007687 272 LTELPV-GISDLVSLQHLDLSESDISELPG-ELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGA 349 (593)
Q Consensus 272 l~~lp~-~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~ 349 (593)
++.+|. .+..+++|++|++++|.++.+|. .++.+++|++|++++| .+..+|...++.+++|++|++.++...
T Consensus 97 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~----- 170 (270)
T 2o6q_A 97 LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQLK----- 170 (270)
T ss_dssp CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS-----
T ss_pred CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCcCc-----
Confidence 998865 57899999999999999998875 4789999999999999 688888877899999999999988753
Q ss_pred CccccccCCcccchhhhcCCCCCceEEEEecCccchhhhhhcccccccceEEEecccCCCceeeeccccccccccceeec
Q 007687 350 SEDSILFGGGALIVEELLGLKYLEVISFTLRSSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIA 429 (593)
Q Consensus 350 ~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 429 (593)
......+..+++|+.|+++.+... .++...+..+++|+.|++.
T Consensus 171 ----------~~~~~~~~~l~~L~~L~L~~N~l~---------------------------~~~~~~~~~l~~L~~L~l~ 213 (270)
T 2o6q_A 171 ----------RVPEGAFDKLTELKTLKLDNNQLK---------------------------RVPEGAFDSLEKLKMLQLQ 213 (270)
T ss_dssp ----------CCCTTTTTTCTTCCEEECCSSCCS---------------------------CCCTTTTTTCTTCCEEECC
T ss_pred ----------EeChhHhccCCCcCEEECCCCcCC---------------------------cCCHHHhccccCCCEEEec
Confidence 112233556666666666543322 2222345566777778877
Q ss_pred ccc
Q 007687 430 ECK 432 (593)
Q Consensus 430 ~~~ 432 (593)
+++
T Consensus 214 ~N~ 216 (270)
T 2o6q_A 214 ENP 216 (270)
T ss_dssp SSC
T ss_pred CCC
Confidence 765
No 74
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.74 E-value=6.4e-19 Score=191.73 Aligned_cols=198 Identities=13% Similarity=0.050 Sum_probs=101.8
Q ss_pred CcceeEEEeeccCccccc-----cc-ccCCcccEEEccCccCcccc----hhhhccCCCCcEEEcCCCCCCcCCcccCCC
Q 007687 213 WENVRRISLMDNQITNLS-----EV-ATCRHLLTLFLNQNKLQMIH----NDFFRFMPSLKVLNLSHAELTELPVGISDL 282 (593)
Q Consensus 213 ~~~lr~L~l~~~~~~~l~-----~~-~~~~~Lr~L~l~~~~l~~~~----~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L 282 (593)
+++|++|++++|.+.+.. .. ..+++|++|++++|.++.+. ...+..+++|++|++++|.+..+|..+.++
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~ 242 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAA 242 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHC
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhh
Confidence 356666666666543321 11 45566666666666554221 122445666666666666666666666666
Q ss_pred CCCcEeeCCCCcC----cccchhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCC
Q 007687 283 VSLQHLDLSESDI----SELPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGG 358 (593)
Q Consensus 283 ~~L~~L~L~~~~i----~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 358 (593)
++|++|++++... ...+..+..+++|+.|+++++ ....+|.. +..+++|++|++.+|...
T Consensus 243 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~-~~~~~~L~~L~Ls~~~l~-------------- 306 (592)
T 3ogk_B 243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPIL-FPFAAQIRKLDLLYALLE-------------- 306 (592)
T ss_dssp TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGG-GGGGGGCCEEEETTCCCC--------------
T ss_pred hHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHH-HhhcCCCcEEecCCCcCC--------------
Confidence 6666666653211 122334445555555555554 33445553 666777777777776632
Q ss_pred cccchhhhcCCCCCceEEEEecCccchhhhhhcccccccceEEEecc----------cCCCceeeecc-cccccccccee
Q 007687 359 GALIVEELLGLKYLEVISFTLRSSHGLQSVLSSHKLRCCTRALLLQC----------FNDSTSLEVSA-LADLKQLNRLR 427 (593)
Q Consensus 359 ~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~----------~~~~~~~~~~~-l~~l~~L~~L~ 427 (593)
.......++.+++|+.|.+. .... ...+.......++|+.|++.+ +.......+.. ...+++|++|.
T Consensus 307 ~~~~~~~~~~~~~L~~L~L~-~~~~-~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~ 384 (592)
T 3ogk_B 307 TEDHCTLIQKCPNLEVLETR-NVIG-DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMA 384 (592)
T ss_dssp HHHHHHHHTTCTTCCEEEEE-GGGH-HHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEE
T ss_pred HHHHHHHHHhCcCCCEEecc-CccC-HHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEE
Confidence 22222335667777777776 2111 111111112234677777773 43333322222 23356666666
Q ss_pred e
Q 007687 428 I 428 (593)
Q Consensus 428 l 428 (593)
+
T Consensus 385 l 385 (592)
T 3ogk_B 385 V 385 (592)
T ss_dssp E
T ss_pred e
Confidence 6
No 75
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.73 E-value=6.9e-20 Score=192.97 Aligned_cols=310 Identities=15% Similarity=0.110 Sum_probs=174.5
Q ss_pred CCcceeEEEeeccCccccc--cc-ccCC----cccEEEccCccCccc----chhhhccCCCCcEEEcCCCCCCcC-Ccc-
Q 007687 212 GWENVRRISLMDNQITNLS--EV-ATCR----HLLTLFLNQNKLQMI----HNDFFRFMPSLKVLNLSHAELTEL-PVG- 278 (593)
Q Consensus 212 ~~~~lr~L~l~~~~~~~l~--~~-~~~~----~Lr~L~l~~~~l~~~----~~~~~~~l~~Lr~L~L~~~~l~~l-p~~- 278 (593)
.++++++|++++|.+.... .. ..++ +|++|++++|.++.. ....+..+++|++|++++|.+... +..
T Consensus 54 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 133 (461)
T 1z7x_W 54 VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLL 133 (461)
T ss_dssp TCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHH
T ss_pred hCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHH
Confidence 3456677777766655421 11 2222 577777777766531 133366667777777777665521 111
Q ss_pred ----cCCCCCCcEeeCCCCcCcc-----cchhhhccccCceeeccccccccccchhhcC-----CCccCceeeccCCCCC
Q 007687 279 ----ISDLVSLQHLDLSESDISE-----LPGELKALVNLKCLNLEWTRNLITIPRQLIS-----NLSRLHVLRMFGASHN 344 (593)
Q Consensus 279 ----i~~L~~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~-----~l~~L~~L~l~~~~~~ 344 (593)
.....+|++|++++|.++. ++..+..+++|++|++++|. +.......+. .+++|++|++.+|...
T Consensus 134 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 212 (461)
T 1z7x_W 134 CEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVT 212 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCB
T ss_pred HHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCc
Confidence 2224567777777776653 34555666777777777763 3322111121 3457777777766542
Q ss_pred CCCCCCccccccCCcccchhhhcCCCCCceEEEEecCccch--hhhhhc-ccccccceEEEecccCCCceee----eccc
Q 007687 345 AFDGASEDSILFGGGALIVEELLGLKYLEVISFTLRSSHGL--QSVLSS-HKLRCCTRALLLQCFNDSTSLE----VSAL 417 (593)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~--~~~~~~-~~~~~~L~~L~l~~~~~~~~~~----~~~l 417 (593)
. .........+..+++|+.|+++.+..... ..+... ....++|+.|+++++. ..... ...+
T Consensus 213 ~-----------~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l 280 (461)
T 1z7x_W 213 S-----------DNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVL 280 (461)
T ss_dssp T-----------THHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHH
T ss_pred H-----------HHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHH
Confidence 0 00012355567788888888887654332 111111 1124588899998883 33321 1345
Q ss_pred cccccccceeeccccccceeeeccCCcccccCCCCccEEEEeCCCCCCCCc------ccccCCCCCEEeeccCccchhhc
Q 007687 418 ADLKQLNRLRIAECKKLEELKMDYTGEVQQFVFHSLKKVEIVNSYKLKDLT------FLVFAPNLESIEVLGCVAMEEMV 491 (593)
Q Consensus 418 ~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~------~l~~l~~L~~L~l~~c~~l~~~~ 491 (593)
..+++|++|++++|.... ..+......-....++|+.|++++| .++... .+..+++|++|++++|. +....
T Consensus 281 ~~~~~L~~L~Ls~n~i~~-~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~ 357 (461)
T 1z7x_W 281 RAKESLKELSLAGNELGD-EGARLLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAG 357 (461)
T ss_dssp HHCTTCCEEECTTCCCHH-HHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHH
T ss_pred hhCCCcceEECCCCCCch-HHHHHHHHHhccCCccceeeEcCCC-CCchHHHHHHHHHHhhCCCccEEEccCCc-ccccc
Confidence 567889999998885322 1111111000112468999999998 455431 25677999999999884 33321
Q ss_pred ccCcccccccccCCC-CCCcccceecccccccCc-----ccCCCCCCCCccceeeeccCc
Q 007687 492 SVGKFAAVPEVTANL-NPFAKLQYLDLVGAINLK-----SIYWMPLSFPLLKYLRAMNCH 545 (593)
Q Consensus 492 ~~~~~~~~~~~~~~~-~~~~~L~~L~l~~c~~L~-----~l~~~~~~~~~L~~L~i~~C~ 545 (593)
.. .+...+ ...++|++|++++| .+. .++.....+++|++|++++|+
T Consensus 358 ~~-------~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 358 VR-------ELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HH-------HHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred HH-------HHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 10 000011 12679999999987 454 444444457999999999884
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.71 E-value=4.5e-17 Score=155.35 Aligned_cols=112 Identities=21% Similarity=0.304 Sum_probs=73.6
Q ss_pred CcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCC-CCcCCc-ccCCCCCCcEeeCCC-CcCcccch-
Q 007687 225 QITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAE-LTELPV-GISDLVSLQHLDLSE-SDISELPG- 300 (593)
Q Consensus 225 ~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~-l~~lp~-~i~~L~~L~~L~L~~-~~i~~lp~- 300 (593)
.++.+|. -.++|++|++++|.++.+++..|.++++|++|++++|. ++.+|. .+..+++|++|++++ +.++.+|.
T Consensus 22 ~l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 22 DIQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp SCSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred CccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 3555655 33467777777777777776667777777777777775 666654 567777777777776 67776663
Q ss_pred hhhccccCceeeccccccccccchhhcCCCccCc---eeeccCC
Q 007687 301 ELKALVNLKCLNLEWTRNLITIPRQLISNLSRLH---VLRMFGA 341 (593)
Q Consensus 301 ~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~---~L~l~~~ 341 (593)
.+..+++|++|++++| .++.+|. ++.+++|+ +|++.++
T Consensus 100 ~f~~l~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNT-GLKMFPD--LTKVYSTDIFFILEITDN 140 (239)
T ss_dssp SEECCTTCCEEEEEEE-CCCSCCC--CTTCCBCCSEEEEEEESC
T ss_pred HhCCCCCCCEEeCCCC-CCccccc--cccccccccccEEECCCC
Confidence 4566777777777776 4555664 55555555 5555554
No 77
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.71 E-value=9.9e-17 Score=162.16 Aligned_cols=237 Identities=19% Similarity=0.170 Sum_probs=143.2
Q ss_pred EEEcCCcceecCCCCCCcceeEEEeeccCccccccc--ccCCcccEEEccCccC-cccchhhhccCCCCcE-EEcCCCCC
Q 007687 197 LVYAGVGLTEAPEVKGWENVRRISLMDNQITNLSEV--ATCRHLLTLFLNQNKL-QMIHNDFFRFMPSLKV-LNLSHAEL 272 (593)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~l-~~~~~~~~~~l~~Lr~-L~L~~~~l 272 (593)
+.+.+.+++.+|... .+++++|++++|.++.++.. .++++|++|++++|.+ +.++...|.++++|+. +.+.++.+
T Consensus 14 v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l 92 (350)
T 4ay9_X 14 FLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL 92 (350)
T ss_dssp EEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTC
T ss_pred EEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcc
Confidence 445555566665422 24566666666666665542 5566666666666654 3345444555555443 34444555
Q ss_pred CcC-CcccCCCCCCcEeeCCCCcCcccch-hhhccccCceeeccccccccccchhhcCCCc-cCceeeccCCCCCCCCCC
Q 007687 273 TEL-PVGISDLVSLQHLDLSESDISELPG-ELKALVNLKCLNLEWTRNLITIPRQLISNLS-RLHVLRMFGASHNAFDGA 349 (593)
Q Consensus 273 ~~l-p~~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~-~L~~L~l~~~~~~~~~~~ 349 (593)
+.+ |..+..+++|++|++++|.++.+|. ......++..|++.++..+..+|...+..+. .+++|++.++..
T Consensus 93 ~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i------ 166 (350)
T 4ay9_X 93 LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI------ 166 (350)
T ss_dssp CEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC------
T ss_pred cccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc------
Confidence 555 3345666666666666666655543 2334445555555554455555544344432 355555554432
Q ss_pred CccccccCCcccchhhhcCCCCCceEEEEecCccchhhhhhcccccccceEEEecccCCCceeeeccccccccccceeec
Q 007687 350 SEDSILFGGGALIVEELLGLKYLEVISFTLRSSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIA 429 (593)
Q Consensus 350 ~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 429 (593)
..++... .....++.|.+.++...+.++...+..+++|++|+++
T Consensus 167 ---------------------------------~~i~~~~---f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs 210 (350)
T 4ay9_X 167 ---------------------------------QEIHNSA---FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDIS 210 (350)
T ss_dssp ---------------------------------CEECTTS---STTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECT
T ss_pred ---------------------------------cCCChhh---ccccchhHHhhccCCcccCCCHHHhccCcccchhhcC
Confidence 2221111 1123677888877777777776778899999999999
Q ss_pred cccccceeeeccCCcccccCCCCccEEEEeCCCCCCCCcccccCCCCCEEeeccCc
Q 007687 430 ECKKLEELKMDYTGEVQQFVFHSLKKVEIVNSYKLKDLTFLVFAPNLESIEVLGCV 485 (593)
Q Consensus 430 ~~~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~ 485 (593)
++.. +.+++. .+.+|+.|.+.++..++.+|.+..+++|+.+++.+..
T Consensus 211 ~N~l-~~lp~~--------~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 211 RTRI-HSLPSY--------GLENLKKLRARSTYNLKKLPTLEKLVALMEASLTYPS 257 (350)
T ss_dssp TSCC-CCCCSS--------SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSCHH
T ss_pred CCCc-CccChh--------hhccchHhhhccCCCcCcCCCchhCcChhhCcCCCCc
Confidence 9863 433322 3789999999999999999999999999999997543
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.71 E-value=3.8e-17 Score=159.02 Aligned_cols=152 Identities=23% Similarity=0.314 Sum_probs=109.1
Q ss_pred CCcceeEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCc-ccCCCCCCcEeeC
Q 007687 212 GWENVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPV-GISDLVSLQHLDL 290 (593)
Q Consensus 212 ~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~L~~L~~L~L 290 (593)
.+++++.|++.++.+..++....+++|++|++++|.++.++. +..+++|++|++++|.++.+|. .++.+++|++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISA--LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchh--hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 346778888888887777777778888888888888777653 7778888888888888877754 4677888888888
Q ss_pred CCCcCcccchh-hhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccchhhhcCC
Q 007687 291 SESDISELPGE-LKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELLGL 369 (593)
Q Consensus 291 ~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l 369 (593)
++|.++.+|.. ++.+++|++|++++| .+..+|...++.+++|++|++.++... ......++.+
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~---------------~~~~~~~~~l 180 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQ---------------SLPEGVFDKL 180 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC---------------CCCTTTTTTC
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcC---------------ccCHHHhcCC
Confidence 88888777654 577888888888888 566777665677888888888877642 1122234556
Q ss_pred CCCceEEEEecC
Q 007687 370 KYLEVISFTLRS 381 (593)
Q Consensus 370 ~~L~~L~i~~~~ 381 (593)
++|+.|+++.+.
T Consensus 181 ~~L~~L~L~~N~ 192 (272)
T 3rfs_A 181 TQLKDLRLYQNQ 192 (272)
T ss_dssp TTCCEEECCSSC
T ss_pred ccCCEEECCCCc
Confidence 666666665443
No 79
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.70 E-value=2.3e-17 Score=179.44 Aligned_cols=306 Identities=16% Similarity=0.147 Sum_probs=207.8
Q ss_pred CCcceeEEEeeccCccc-----cccc-ccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCC----CcCCcccCC
Q 007687 212 GWENVRRISLMDNQITN-----LSEV-ATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAEL----TELPVGISD 281 (593)
Q Consensus 212 ~~~~lr~L~l~~~~~~~-----l~~~-~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l----~~lp~~i~~ 281 (593)
.++++++|++++|.+.. ++.. ..+++|++|++++|.+..++.. +..+++|++|++++... ...+..+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGF-FKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHH-HHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHH-HhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 45789999999998863 3333 6799999999999998888754 89999999999986422 245567889
Q ss_pred CCCCcEeeCCCCcCcccchhhhccccCceeeccccccccc-cchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcc
Q 007687 282 LVSLQHLDLSESDISELPGELKALVNLKCLNLEWTRNLIT-IPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGA 360 (593)
Q Consensus 282 L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~-lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 360 (593)
+++|++|++.++....+|..+..+++|++|++++|. +.. ....++..+++|++|++.++.. ..
T Consensus 269 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~---------------~~ 332 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIG---------------DR 332 (592)
T ss_dssp CTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGH---------------HH
T ss_pred cccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccC---------------HH
Confidence 999999999998777899989999999999999995 432 2223468999999999983221 22
Q ss_pred cchhhhcCCCCCceEEEEe----------cCccchhhhhhcccccccceEEEecccCCCceeeeccccc-cccccceeec
Q 007687 361 LIVEELLGLKYLEVISFTL----------RSSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALAD-LKQLNRLRIA 429 (593)
Q Consensus 361 ~~~~~L~~l~~L~~L~i~~----------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~-l~~L~~L~l~ 429 (593)
....-...+++|+.|+++. ........+.......++|+.|.+..+ ......+..+.. +++|++|++.
T Consensus 333 ~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~l~~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 333 GLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVS-DITNESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp HHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEES-CCCHHHHHHHHHHCCSCCEEEEE
T ss_pred HHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecC-CccHHHHHHHHhhCCCCcEEEEe
Confidence 2233346678899999993 222121222222233568999999443 444444345544 7899999998
Q ss_pred cc---cccceeeec-cCCcccccCCCCccEEEEeCCCC-CCC--Cccc-ccCCCCCEEeeccCccchhhcccCccccccc
Q 007687 430 EC---KKLEELKMD-YTGEVQQFVFHSLKKVEIVNSYK-LKD--LTFL-VFAPNLESIEVLGCVAMEEMVSVGKFAAVPE 501 (593)
Q Consensus 430 ~~---~~~~~l~~~-~~~~~~~~~l~~L~~L~l~~c~~-l~~--l~~l-~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 501 (593)
++ ..++..+.+ ... .....+++|+.|+++.|.. +.+ +..+ ..+++|++|+|++|..-...+.
T Consensus 412 ~~~~~n~l~~~p~~~~~~-~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~--------- 481 (592)
T 3ogk_B 412 LLDREERITDLPLDNGVR-SLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM--------- 481 (592)
T ss_dssp ECSCCSCCSSCCCHHHHH-HHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHH---------
T ss_pred ecCCCccccCchHHHHHH-HHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHH---------
Confidence 54 333321100 000 0012378999999988753 333 2223 3489999999998863321111
Q ss_pred ccCCCCCCcccceecccccccCcc--cCCCCCCCCccceeeeccCcCCCC
Q 007687 502 VTANLNPFAKLQYLDLVGAINLKS--IYWMPLSFPLLKYLRAMNCHKLKK 549 (593)
Q Consensus 502 ~~~~~~~~~~L~~L~l~~c~~L~~--l~~~~~~~~~L~~L~i~~C~~L~~ 549 (593)
....++++|++|++++|+ +.. ++.....+++|++|++++|. ++.
T Consensus 482 --~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 482 --EFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASM 527 (592)
T ss_dssp --HHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred --HHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCH
Confidence 134567999999999997 443 22223358999999999998 544
No 80
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.70 E-value=2.9e-18 Score=180.52 Aligned_cols=60 Identities=17% Similarity=0.117 Sum_probs=37.8
Q ss_pred CCCCcccceecccccccCcccCCC------CCCCCccceeeeccCcCCC-----CCCCCCCcc-cccceEEecc
Q 007687 506 LNPFAKLQYLDLVGAINLKSIYWM------PLSFPLLKYLRAMNCHKLK-----KLPFDSNSA-RERNIVISGY 567 (593)
Q Consensus 506 ~~~~~~L~~L~l~~c~~L~~l~~~------~~~~~~L~~L~i~~C~~L~-----~lP~~~~~~-~l~~l~I~~~ 567 (593)
+..+++|++|+++++ .+...... ....++|++|++++| +++ .+|..+... +|+.+.+.++
T Consensus 337 l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 337 LAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp HHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred HhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCC
Confidence 344578888888876 44432111 112578999999998 455 456554444 6888888766
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.69 E-value=2e-16 Score=153.90 Aligned_cols=171 Identities=24% Similarity=0.363 Sum_probs=145.9
Q ss_pred CcEEEEcCCcceecCCCCCCcceeEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCC
Q 007687 194 ENFLVYAGVGLTEAPEVKGWENVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELT 273 (593)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~ 273 (593)
-..+...+..+..++.+..++++++|++++|.+..++....+++|++|++++|.++.+++..|..+++|++|++++|.++
T Consensus 43 L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 122 (272)
T 3rfs_A 43 IDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ 122 (272)
T ss_dssp CCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred eeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCC
Confidence 35577777778888888888999999999999999888899999999999999999999888899999999999999999
Q ss_pred cCCc-ccCCCCCCcEeeCCCCcCcccchh-hhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCc
Q 007687 274 ELPV-GISDLVSLQHLDLSESDISELPGE-LKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASE 351 (593)
Q Consensus 274 ~lp~-~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~ 351 (593)
.+|. .++.+++|++|++++|.++.+|.. ++.+++|++|++++| .+..+|...++.+++|++|++.++...
T Consensus 123 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~------- 194 (272)
T 3rfs_A 123 SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQLK------- 194 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS-------
T ss_pred ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCcCC-------
Confidence 8865 479999999999999999988865 589999999999999 677888776899999999999998763
Q ss_pred cccccCCcccchhhhcCCCCCceEEEEec
Q 007687 352 DSILFGGGALIVEELLGLKYLEVISFTLR 380 (593)
Q Consensus 352 ~~~~~~~~~~~~~~L~~l~~L~~L~i~~~ 380 (593)
......+..+++|+.|+++.+
T Consensus 195 --------~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 195 --------SVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp --------CCCTTTTTTCTTCCEEECCSS
T ss_pred --------ccCHHHHhCCcCCCEEEccCC
Confidence 222334566777776666543
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.69 E-value=2.2e-16 Score=154.98 Aligned_cols=170 Identities=26% Similarity=0.326 Sum_probs=142.5
Q ss_pred cEEEEcCCcceecCCCCCCcceeEEEeeccCcccccc--cccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCC
Q 007687 195 NFLVYAGVGLTEAPEVKGWENVRRISLMDNQITNLSE--VATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAEL 272 (593)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l 272 (593)
..+.+.+..++.+|.... +++++|++++|.+..++. +..+++|++|++++|.++.++.. ..+++|++|++++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l 89 (290)
T 1p9a_G 13 LEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQL 89 (290)
T ss_dssp CEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCC
T ss_pred cEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcC
Confidence 456777778888875433 789999999999998764 38899999999999999998874 7899999999999999
Q ss_pred CcCCcccCCCCCCcEeeCCCCcCcccc-hhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCc
Q 007687 273 TELPVGISDLVSLQHLDLSESDISELP-GELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASE 351 (593)
Q Consensus 273 ~~lp~~i~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~ 351 (593)
+.+|..+..+++|++|++++|.++.+| ..+..+++|++|++++| .+..+|.+++..+++|++|++.++...
T Consensus 90 ~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~------- 161 (290)
T 1p9a_G 90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLT------- 161 (290)
T ss_dssp SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCS-------
T ss_pred CcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCCcCC-------
Confidence 999999999999999999999999988 56899999999999999 788888887899999999999988763
Q ss_pred cccccCCcccchhhhcCCCCCceEEEEecCcc
Q 007687 352 DSILFGGGALIVEELLGLKYLEVISFTLRSSH 383 (593)
Q Consensus 352 ~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~ 383 (593)
......+..+++|+.|+++.+...
T Consensus 162 --------~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 162 --------ELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp --------CCCTTTTTTCTTCCEEECCSSCCC
T ss_pred --------ccCHHHhcCcCCCCEEECCCCcCC
Confidence 111223456777777777655443
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.69 E-value=3.1e-17 Score=165.04 Aligned_cols=223 Identities=19% Similarity=0.194 Sum_probs=113.8
Q ss_pred ccEEEccCccCcccchhhhccC--CCCcEEEcCCCCCCcCCcccCCCCCCcEeeCCCCcCcc--cchhhhccccCceeec
Q 007687 238 LLTLFLNQNKLQMIHNDFFRFM--PSLKVLNLSHAELTELPVGISDLVSLQHLDLSESDISE--LPGELKALVNLKCLNL 313 (593)
Q Consensus 238 Lr~L~l~~~~l~~~~~~~~~~l--~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~--lp~~i~~L~~L~~L~l 313 (593)
++.++++++.+. +..+..+ +++++|+++++.+...+..+..+++|++|++++|.++. +|..+..+++|++|++
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 445555555443 2224444 56666666666666554455566666666666666552 5555666666666666
Q ss_pred cccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcc-cchhhhcCCCCCceEEEEec-Cccchhhhhhc
Q 007687 314 EWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGA-LIVEELLGLKYLEVISFTLR-SSHGLQSVLSS 391 (593)
Q Consensus 314 ~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~l~~L~~L~i~~~-~~~~~~~~~~~ 391 (593)
++|......|.. ++++++|++|++.+|... .. .....+..+++|+.|+++.+ ..+...
T Consensus 126 ~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l--------------~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~----- 185 (336)
T 2ast_B 126 EGLRLSDPIVNT-LAKNSNLVRLNLSGCSGF--------------SEFALQTLLSSCSRLDELNLSWCFDFTEKH----- 185 (336)
T ss_dssp TTCBCCHHHHHH-HTTCTTCSEEECTTCBSC--------------CHHHHHHHHHHCTTCCEEECCCCTTCCHHH-----
T ss_pred cCcccCHHHHHH-HhcCCCCCEEECCCCCCC--------------CHHHHHHHHhcCCCCCEEcCCCCCCcChHH-----
Confidence 666322234443 566666666666665321 11 12222444444444444432 211100
Q ss_pred ccccccceEEEecccCCCceeeeccccccc-cccceeecccc-ccc-eeeeccCCcccccCCCCccEEEEeCCCCCCC--
Q 007687 392 HKLRCCTRALLLQCFNDSTSLEVSALADLK-QLNRLRIAECK-KLE-ELKMDYTGEVQQFVFHSLKKVEIVNSYKLKD-- 466 (593)
Q Consensus 392 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~-~~~-~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-- 466 (593)
+ ...+..++ +|++|++++|. .+. ...+.... .+++|+.|++++|..+++
T Consensus 186 --------------------~-~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~-----~~~~L~~L~l~~~~~l~~~~ 239 (336)
T 2ast_B 186 --------------------V-QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR-----RCPNLVHLDLSDSVMLKNDC 239 (336)
T ss_dssp --------------------H-HHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH-----HCTTCSEEECTTCTTCCGGG
T ss_pred --------------------H-HHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh-----hCCCCCEEeCCCCCcCCHHH
Confidence 0 01234445 66666666653 121 00111111 256677777766643433
Q ss_pred CcccccCCCCCEEeeccCccchhhcccCcccccccccCCCCCCcccceeccccc
Q 007687 467 LTFLVFAPNLESIEVLGCVAMEEMVSVGKFAAVPEVTANLNPFAKLQYLDLVGA 520 (593)
Q Consensus 467 l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 520 (593)
++.++.+++|++|++++|..+.... ...+..+++|+.|++++|
T Consensus 240 ~~~l~~l~~L~~L~l~~~~~~~~~~-----------~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 240 FQEFFQLNYLQHLSLSRCYDIIPET-----------LLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGGGCTTCCEEECTTCTTCCGGG-----------GGGGGGCTTCCEEECTTS
T ss_pred HHHHhCCCCCCEeeCCCCCCCCHHH-----------HHHHhcCCCCCEEeccCc
Confidence 3346666777777777775322210 012345677777777776
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.69 E-value=7.4e-18 Score=169.61 Aligned_cols=223 Identities=14% Similarity=0.135 Sum_probs=144.1
Q ss_pred ceeEEEeeccCcccccccccC--CcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCc--CCcccCCCCCCcEeeC
Q 007687 215 NVRRISLMDNQITNLSEVATC--RHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTE--LPVGISDLVSLQHLDL 290 (593)
Q Consensus 215 ~lr~L~l~~~~~~~l~~~~~~--~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~--lp~~i~~L~~L~~L~L 290 (593)
..++++++++.+.. .....+ ++++.|++.+|.+...++. +..+++|++|++++|.+.. +|..+..+++|++|++
T Consensus 48 ~~~~l~l~~~~~~~-~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 48 LWQTLDLTGKNLHP-DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp TSSEEECTTCBCCH-HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred hheeeccccccCCH-HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 46677777776552 112344 7888999998888777666 5678899999999988763 7778888999999999
Q ss_pred CCCcCc-ccchhhhccccCceeecccccccc--ccchhhcCCCccCceeeccCC-CCCCCCCCCccccccCCcccchhhh
Q 007687 291 SESDIS-ELPGELKALVNLKCLNLEWTRNLI--TIPRQLISNLSRLHVLRMFGA-SHNAFDGASEDSILFGGGALIVEEL 366 (593)
Q Consensus 291 ~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~--~lp~~~i~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~L 366 (593)
++|.++ ..|..++++++|++|++++|..++ .+|.. +.++++|++|++.+| ... .......+
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~--------------~~~~~~~~ 190 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFT--------------EKHVQVAV 190 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCC--------------HHHHHHHH
T ss_pred cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcC--------------hHHHHHHH
Confidence 998877 567778888999999999885555 35554 778899999999888 442 22344556
Q ss_pred cCCC-CCceEEEEecCc-cchhhhhhcccccccceEEEecccCCCceeeeccccccccccceeeccccccceeeeccCCc
Q 007687 367 LGLK-YLEVISFTLRSS-HGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIAECKKLEELKMDYTGE 444 (593)
Q Consensus 367 ~~l~-~L~~L~i~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~ 444 (593)
..++ +|+.|+++.+.. -....+. ..+..+++|++|++++|..+....+....
T Consensus 191 ~~l~~~L~~L~l~~~~~~~~~~~l~-------------------------~~~~~~~~L~~L~l~~~~~l~~~~~~~l~- 244 (336)
T 2ast_B 191 AHVSETITQLNLSGYRKNLQKSDLS-------------------------TLVRRCPNLVHLDLSDSVMLKNDCFQEFF- 244 (336)
T ss_dssp HHSCTTCCEEECCSCGGGSCHHHHH-------------------------HHHHHCTTCSEEECTTCTTCCGGGGGGGG-
T ss_pred HhcccCCCEEEeCCCcccCCHHHHH-------------------------HHHhhCCCCCEEeCCCCCcCCHHHHHHHh-
Confidence 6777 788777765421 0001111 12334456666666665532211122222
Q ss_pred ccccCCCCccEEEEeCCCCCCC--CcccccCCCCCEEeeccC
Q 007687 445 VQQFVFHSLKKVEIVNSYKLKD--LTFLVFAPNLESIEVLGC 484 (593)
Q Consensus 445 ~~~~~l~~L~~L~l~~c~~l~~--l~~l~~l~~L~~L~l~~c 484 (593)
.+++|+.|++++|..+.. +..++.+++|++|++++|
T Consensus 245 ----~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 245 ----QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp ----GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred ----CCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 256666666666643322 123556677777777766
No 85
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.68 E-value=2.6e-16 Score=159.02 Aligned_cols=238 Identities=15% Similarity=0.135 Sum_probs=163.5
Q ss_pred cEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCc-ccCCCCCCcEeeCCCCcCc-ccch-hhhccccCceeeccc
Q 007687 239 LTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPV-GISDLVSLQHLDLSESDIS-ELPG-ELKALVNLKCLNLEW 315 (593)
Q Consensus 239 r~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~-~lp~-~i~~L~~L~~L~l~~ 315 (593)
++++.+++.++.+|..+ .+++++|+|++|.|+.+|. .|.++++|++|+|++|.+. .+|. .+.++++|+.+...+
T Consensus 12 ~~v~C~~~~Lt~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 56777888888888763 4678899999999998875 5888999999999998864 5664 467788877655554
Q ss_pred cccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccchhhhcCCCCCceEEEEecCccchhhhhhccccc
Q 007687 316 TRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELLGLKYLEVISFTLRSSHGLQSVLSSHKLR 395 (593)
Q Consensus 316 ~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~~~ 395 (593)
+..+..+|++++..+++|++|++.++....+. ........
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~---------------~~~~~~~~------------------------- 128 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLP---------------DVHKIHSL------------------------- 128 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCC---------------CCTTCCBS-------------------------
T ss_pred CCcccccCchhhhhccccccccccccccccCC---------------chhhcccc-------------------------
Confidence 44788887776888888888888877653100 00011111
Q ss_pred ccceEEEecccCCCceeeecccccc-ccccceeeccccccceeeeccCCcccccCCCCccEEEEeCCCCCCCCcc--ccc
Q 007687 396 CCTRALLLQCFNDSTSLEVSALADL-KQLNRLRIAECKKLEELKMDYTGEVQQFVFHSLKKVEIVNSYKLKDLTF--LVF 472 (593)
Q Consensus 396 ~~L~~L~l~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--l~~ 472 (593)
.+..|++.++.....++...+..+ ..++.|+++++.. +.+.+.... ..+|+.|.+.++..++.++. ++.
T Consensus 129 -~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i-~~i~~~~f~------~~~L~~l~l~~~n~l~~i~~~~f~~ 200 (350)
T 4ay9_X 129 -QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI-QEIHNSAFN------GTQLDELNLSDNNNLEELPNDVFHG 200 (350)
T ss_dssp -SCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC-CEECTTSST------TEEEEEEECTTCTTCCCCCTTTTTT
T ss_pred -hhhhhhhccccccccccccchhhcchhhhhhccccccc-cCCChhhcc------ccchhHHhhccCCcccCCCHHHhcc
Confidence 233344444334444443444444 3588888988754 444444332 46788999988778888875 678
Q ss_pred CCCCCEEeeccCccchhhcccCcccccccccCCCCCCcccceecccccccCcccCCCCCCCCccceeeecc
Q 007687 473 APNLESIEVLGCVAMEEMVSVGKFAAVPEVTANLNPFAKLQYLDLVGAINLKSIYWMPLSFPLLKYLRAMN 543 (593)
Q Consensus 473 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~L~~L~i~~ 543 (593)
+++|++|++++|. ++.++. ..|.+|+.|.+.++.+++.+|. ...+++|+.+++.+
T Consensus 201 l~~L~~LdLs~N~-l~~lp~--------------~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 201 ASGPVILDISRTR-IHSLPS--------------YGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp EECCSEEECTTSC-CCCCCS--------------SSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred CcccchhhcCCCC-cCccCh--------------hhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 8999999999883 444422 4577888888888888888884 55688888888854
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.67 E-value=6.1e-16 Score=148.61 Aligned_cols=171 Identities=23% Similarity=0.309 Sum_probs=140.6
Q ss_pred cEEEEcCCcceecCCCCCCcceeEEEeeccCccccccc--ccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCC
Q 007687 195 NFLVYAGVGLTEAPEVKGWENVRRISLMDNQITNLSEV--ATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAEL 272 (593)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l 272 (593)
..+.+.+..+..+|.... ++++.|++++|.+..++.. ..+++|++|++++|.++.+++..|..+++|++|+|++|.+
T Consensus 17 ~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 95 (251)
T 3m19_A 17 KEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95 (251)
T ss_dssp TEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred eEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcc
Confidence 457777778888875433 6899999999999887753 7889999999999999988888789999999999999999
Q ss_pred CcCCc-ccCCCCCCcEeeCCCCcCcccchh-hhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCC
Q 007687 273 TELPV-GISDLVSLQHLDLSESDISELPGE-LKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGAS 350 (593)
Q Consensus 273 ~~lp~-~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~ 350 (593)
+.+|. .+..+++|++|++++|.++.+|.. +..+++|++|++++| .+..+|.+.++.+++|++|++.++...
T Consensus 96 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~------ 168 (251)
T 3m19_A 96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQ------ 168 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS------
T ss_pred cccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCC------
Confidence 98864 678999999999999999988865 588999999999999 678888766889999999999988763
Q ss_pred ccccccCCcccchhhhcCCCCCceEEEEecCc
Q 007687 351 EDSILFGGGALIVEELLGLKYLEVISFTLRSS 382 (593)
Q Consensus 351 ~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~ 382 (593)
......+..+++|+.|.++.+..
T Consensus 169 ---------~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 169 ---------SVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp ---------CCCTTTTTTCTTCCEEECCSCCB
T ss_pred ---------ccCHHHHhCCCCCCEEEeeCCce
Confidence 22234567778888888876654
No 87
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.67 E-value=6.6e-18 Score=183.77 Aligned_cols=101 Identities=23% Similarity=0.312 Sum_probs=47.0
Q ss_pred cceeEEEeecc-Cccc--cccc-ccCCcccEEEccCccCcccchhh----hccCCCCcEEEcCCCC--CC--cCCcccCC
Q 007687 214 ENVRRISLMDN-QITN--LSEV-ATCRHLLTLFLNQNKLQMIHNDF----FRFMPSLKVLNLSHAE--LT--ELPVGISD 281 (593)
Q Consensus 214 ~~lr~L~l~~~-~~~~--l~~~-~~~~~Lr~L~l~~~~l~~~~~~~----~~~l~~Lr~L~L~~~~--l~--~lp~~i~~ 281 (593)
+++++|++.++ .+.. ++.. ..+++|++|++++|.++...... ...+++|++|++++|. +. .++..+.+
T Consensus 130 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~ 209 (594)
T 2p1m_B 130 KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTR 209 (594)
T ss_dssp TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHH
T ss_pred CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHh
Confidence 45556666555 2222 2222 34556666666555543322111 1244456666665554 11 11222233
Q ss_pred CCCCcEeeCCCC-cCcccchhhhccccCceeecc
Q 007687 282 LVSLQHLDLSES-DISELPGELKALVNLKCLNLE 314 (593)
Q Consensus 282 L~~L~~L~L~~~-~i~~lp~~i~~L~~L~~L~l~ 314 (593)
+++|++|++++| .+..+|..+.++++|++|+++
T Consensus 210 ~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 210 CPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG 243 (594)
T ss_dssp CTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECS
T ss_pred CCCCcEEecCCCCcHHHHHHHHhcCCcceEcccc
Confidence 455555555555 444455555555555555543
No 88
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.66 E-value=2.8e-16 Score=156.22 Aligned_cols=129 Identities=21% Similarity=0.199 Sum_probs=70.2
Q ss_pred CcceeEEEeeccCccc-cccc---ccCCcccEEEccCccCcccchhhhccC-----CCCcEEEcCCCCCCcCC-cccCCC
Q 007687 213 WENVRRISLMDNQITN-LSEV---ATCRHLLTLFLNQNKLQMIHNDFFRFM-----PSLKVLNLSHAELTELP-VGISDL 282 (593)
Q Consensus 213 ~~~lr~L~l~~~~~~~-l~~~---~~~~~Lr~L~l~~~~l~~~~~~~~~~l-----~~Lr~L~L~~~~l~~lp-~~i~~L 282 (593)
++++++|++++|.+.+ +|.. ..+++|++|++++|.++.+|.. +..+ ++|++|++++|.+..+| ..++++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAW-LAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSH-HHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHH-HHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 3556666666666553 3332 4556666666666666555432 4444 56666666666666553 456666
Q ss_pred CCCcEeeCCCCcCcc---cchhh--hccccCceeecccccccc---ccchhhcCCCccCceeeccCCCC
Q 007687 283 VSLQHLDLSESDISE---LPGEL--KALVNLKCLNLEWTRNLI---TIPRQLISNLSRLHVLRMFGASH 343 (593)
Q Consensus 283 ~~L~~L~L~~~~i~~---lp~~i--~~L~~L~~L~l~~~~~l~---~lp~~~i~~l~~L~~L~l~~~~~ 343 (593)
++|++|++++|.+.. +|..+ +.+++|++|++++| .+. .++..++..+++|++|+++++..
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l 240 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSL 240 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcC
Confidence 666666666665432 23333 55666666666666 344 22333334556666666665544
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.65 E-value=1.2e-15 Score=146.56 Aligned_cols=175 Identities=19% Similarity=0.265 Sum_probs=138.5
Q ss_pred ceeEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCC-cccCCCCCCcEeeCCCC
Q 007687 215 NVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELP-VGISDLVSLQHLDLSES 293 (593)
Q Consensus 215 ~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~ 293 (593)
..++++++++.+..+|.... ++++.|++++|.++.+++..|.++++|++|+|++|.++.++ ..+..+++|++|++++|
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 56789999999999887532 68999999999999998877999999999999999999875 46899999999999999
Q ss_pred cCcccch-hhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccchhhhcCCCCC
Q 007687 294 DISELPG-ELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELLGLKYL 372 (593)
Q Consensus 294 ~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L 372 (593)
.++.+|. .+..+++|++|++++| .++.+|.+.++.+++|++|++.++... ......++.+++|
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~---------------~~~~~~~~~l~~L 157 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQ---------------SIPAGAFDKLTNL 157 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC---------------CCCTTTTTTCTTC
T ss_pred cccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCC---------------ccCHHHcCcCcCC
Confidence 9998884 4689999999999999 788888876789999999999988753 1222346666777
Q ss_pred ceEEEEecCccchhhhhhcccccccceEEEecccCCCceeeeccccccccccceeeccccc
Q 007687 373 EVISFTLRSSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIAECKK 433 (593)
Q Consensus 373 ~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 433 (593)
+.|+++.+.... ++...+..+++|+.|++.+|+.
T Consensus 158 ~~L~L~~N~l~~---------------------------~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 158 QTLSLSTNQLQS---------------------------VPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CEEECCSSCCSC---------------------------CCTTTTTTCTTCCEEECCSCCB
T ss_pred CEEECCCCcCCc---------------------------cCHHHHhCCCCCCEEEeeCCce
Confidence 777666443322 2223456667777777777653
No 90
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.65 E-value=6.2e-16 Score=151.86 Aligned_cols=146 Identities=24% Similarity=0.347 Sum_probs=109.6
Q ss_pred CCcceeEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCcccCCCCCCcEeeCC
Q 007687 212 GWENVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISDLVSLQHLDLS 291 (593)
Q Consensus 212 ~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~ 291 (593)
.++++++|+++++.+..++....+++|++|++++|.++.+++ +..+++|++|++++|.++.+| .++.+++|++|+++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLE 120 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECT
T ss_pred hcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCCh-hhccCCCCCEEECC
Confidence 456788888888888888777778888888888888887776 778888888888888887776 47888888888888
Q ss_pred CCcCcccchhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccchhhhcCCCC
Q 007687 292 ESDISELPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELLGLKY 371 (593)
Q Consensus 292 ~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~ 371 (593)
+|.++.++ .+..+++|++|++++| .+..++. ++.+++|++|++.++... . +..+..+++
T Consensus 121 ~n~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~N~l~--------------~---~~~l~~l~~ 179 (291)
T 1h6t_A 121 HNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQIS--------------D---IVPLAGLTK 179 (291)
T ss_dssp TSCCCCCG-GGGGCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECCSSCCC--------------C---CGGGTTCTT
T ss_pred CCcCCCCh-hhcCCCCCCEEEccCC-cCCcchh--hccCCCCCEEEccCCccc--------------c---chhhcCCCc
Confidence 88888774 4778888888888888 5666643 788888888888877653 1 112666666
Q ss_pred CceEEEEecC
Q 007687 372 LEVISFTLRS 381 (593)
Q Consensus 372 L~~L~i~~~~ 381 (593)
|+.|+++.+.
T Consensus 180 L~~L~L~~N~ 189 (291)
T 1h6t_A 180 LQNLYLSKNH 189 (291)
T ss_dssp CCEEECCSSC
T ss_pred cCEEECCCCc
Confidence 6666665443
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.64 E-value=3e-17 Score=168.53 Aligned_cols=135 Identities=14% Similarity=0.128 Sum_probs=85.8
Q ss_pred ccCCcccEEEccCccCcccchh----hhccCCCCcEEEcCCCCCCc----CCccc-------CCCCCCcEeeCCCCcCcc
Q 007687 233 ATCRHLLTLFLNQNKLQMIHND----FFRFMPSLKVLNLSHAELTE----LPVGI-------SDLVSLQHLDLSESDISE 297 (593)
Q Consensus 233 ~~~~~Lr~L~l~~~~l~~~~~~----~~~~l~~Lr~L~L~~~~l~~----lp~~i-------~~L~~L~~L~L~~~~i~~ 297 (593)
..+++|++|++++|.++..... .+..+++|++|+|++|.+.. +|..+ ..+++|++|+|++|.++.
T Consensus 29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 108 (386)
T 2ca6_A 29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP 108 (386)
T ss_dssp HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence 5677788888888876653222 25577888888888875442 34333 677888888888887775
Q ss_pred -----cchhhhccccCceeeccccccccc-----cchhhcCCC---------ccCceeeccCCCCCCCCCCCccccccCC
Q 007687 298 -----LPGELKALVNLKCLNLEWTRNLIT-----IPRQLISNL---------SRLHVLRMFGASHNAFDGASEDSILFGG 358 (593)
Q Consensus 298 -----lp~~i~~L~~L~~L~l~~~~~l~~-----lp~~~i~~l---------~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 358 (593)
+|..+.++++|++|++++|. ++. ++.. +..+ ++|++|++.+|...
T Consensus 109 ~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~-l~~l~~~~~~~~~~~L~~L~L~~n~l~-------------- 172 (386)
T 2ca6_A 109 TAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARA-LQELAVNKKAKNAPPLRSIICGRNRLE-------------- 172 (386)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHH-HHHHHHHHHHHTCCCCCEEECCSSCCT--------------
T ss_pred HHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHH-HHHHhhhhhcccCCCCcEEECCCCCCC--------------
Confidence 67777888888888888883 332 2221 3333 77888887777652
Q ss_pred cccch---hhhcCCCCCceEEEEecCcc
Q 007687 359 GALIV---EELLGLKYLEVISFTLRSSH 383 (593)
Q Consensus 359 ~~~~~---~~L~~l~~L~~L~i~~~~~~ 383 (593)
..... ..+..+++|+.|.++.+...
T Consensus 173 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 200 (386)
T 2ca6_A 173 NGSMKEWAKTFQSHRLLHTVKMVQNGIR 200 (386)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSCCC
T ss_pred cHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence 12122 34556666666666655443
No 92
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.63 E-value=1.6e-15 Score=139.91 Aligned_cols=150 Identities=16% Similarity=0.223 Sum_probs=128.0
Q ss_pred CCcceeEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCc-CCcccCCCCCCcEeeC
Q 007687 212 GWENVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTE-LPVGISDLVSLQHLDL 290 (593)
Q Consensus 212 ~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~-lp~~i~~L~~L~~L~L 290 (593)
.++++++|++++|.+..++....+++|++|++++|.++.++. +..+++|++|++++|.++. .|..++.+++|++|++
T Consensus 42 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGG--GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred hcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchh--hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 456899999999999998877899999999999998877764 8899999999999999985 6888999999999999
Q ss_pred CCCcCcc-cchhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccchhhhcCC
Q 007687 291 SESDISE-LPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELLGL 369 (593)
Q Consensus 291 ~~~~i~~-lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l 369 (593)
++|.++. .|..++.+++|++|++++|..++.+|. +..+++|++|++.+|... . +..+..+
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~--------------~---~~~l~~l 180 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVH--------------D---YRGIEDF 180 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCC--------------C---CTTGGGC
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCc--------------C---hHHhccC
Confidence 9999985 678899999999999999965888884 899999999999988764 1 2367778
Q ss_pred CCCceEEEEecCc
Q 007687 370 KYLEVISFTLRSS 382 (593)
Q Consensus 370 ~~L~~L~i~~~~~ 382 (593)
++|+.|+++.+..
T Consensus 181 ~~L~~L~l~~N~i 193 (197)
T 4ezg_A 181 PKLNQLYAFSQTI 193 (197)
T ss_dssp SSCCEEEECBC--
T ss_pred CCCCEEEeeCccc
Confidence 8888888876543
No 93
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.63 E-value=2.6e-15 Score=141.96 Aligned_cols=147 Identities=29% Similarity=0.391 Sum_probs=124.7
Q ss_pred EEEEcCCcceecCCCCCCcceeEEEeeccCcccccc--cccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCC
Q 007687 196 FLVYAGVGLTEAPEVKGWENVRRISLMDNQITNLSE--VATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELT 273 (593)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~ 273 (593)
.+.+.+..+..+|.... +++++|++++|.+..++. +..+++|++|++++|.++.++...|..+++|++|+|++|.++
T Consensus 23 ~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 101 (229)
T 3e6j_A 23 TVDCRSKRHASVPAGIP-TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT 101 (229)
T ss_dssp EEECTTSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EeEccCCCcCccCCCCC-CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCC
Confidence 35666777777775333 789999999999988754 378899999999999999998887889999999999999999
Q ss_pred cCCc-ccCCCCCCcEeeCCCCcCcccchhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCC
Q 007687 274 ELPV-GISDLVSLQHLDLSESDISELPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHN 344 (593)
Q Consensus 274 ~lp~-~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 344 (593)
.+|. .+..+++|++|++++|.++.+|..+..+++|++|++++| .+..+|...+..+++|++|++.++...
T Consensus 102 ~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 102 VLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred ccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 8865 468899999999999999999999999999999999998 678888766888999999999887653
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.63 E-value=4.8e-15 Score=145.53 Aligned_cols=166 Identities=23% Similarity=0.378 Sum_probs=147.0
Q ss_pred CcEEEEcCCcceecCCCCCCcceeEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCC
Q 007687 194 ENFLVYAGVGLTEAPEVKGWENVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELT 273 (593)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~ 273 (593)
-..+.+.++.+..++.+..++++++|++++|.+..++....+++|++|++++|.++.++. +..+++|++|++++|.++
T Consensus 48 L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~n~i~ 125 (291)
T 1h6t_A 48 IDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGIS 125 (291)
T ss_dssp CCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTTSCCC
T ss_pred ccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChh--hccCCCCCEEECCCCcCC
Confidence 356777888888888888889999999999999999888999999999999999998776 899999999999999999
Q ss_pred cCCcccCCCCCCcEeeCCCCcCcccchhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccc
Q 007687 274 ELPVGISDLVSLQHLDLSESDISELPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDS 353 (593)
Q Consensus 274 ~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~ 353 (593)
.++ .++.+++|++|++++|.++.+ ..+..+++|++|++++| .+..++. +..+++|++|++.++...
T Consensus 126 ~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~L~~N~i~--------- 191 (291)
T 1h6t_A 126 DIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHIS--------- 191 (291)
T ss_dssp CCG-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCC---------
T ss_pred CCh-hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCC-ccccchh--hcCCCccCEEECCCCcCC---------
Confidence 885 789999999999999999988 56899999999999999 6788876 899999999999998764
Q ss_pred cccCCcccchhhhcCCCCCceEEEEecCcc
Q 007687 354 ILFGGGALIVEELLGLKYLEVISFTLRSSH 383 (593)
Q Consensus 354 ~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~ 383 (593)
.+..+..+++|+.|+++.+...
T Consensus 192 --------~l~~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 192 --------DLRALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp --------BCGGGTTCTTCSEEEEEEEEEE
T ss_pred --------CChhhccCCCCCEEECcCCccc
Confidence 2345888999999999876543
No 95
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.62 E-value=5.6e-16 Score=166.86 Aligned_cols=113 Identities=23% Similarity=0.385 Sum_probs=62.8
Q ss_pred ccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCcccCCCCCCcEeeCCCCcCcccchhh
Q 007687 223 DNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISDLVSLQHLDLSESDISELPGEL 302 (593)
Q Consensus 223 ~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i 302 (593)
.+.+..+.....+++|+.|++++|.+..++. +..+++|++|+|++|.+..+|. +..+++|++|+|++|.++.+| .+
T Consensus 30 ~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l 105 (605)
T 1m9s_A 30 KKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SL 105 (605)
T ss_dssp CSCTTSEECHHHHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TS
T ss_pred CCCcccccchhcCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hh
Confidence 3333333334455556666666665555543 5556666666666666555543 555666666666666555554 35
Q ss_pred hccccCceeeccccccccccchhhcCCCccCceeeccCCC
Q 007687 303 KALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGAS 342 (593)
Q Consensus 303 ~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 342 (593)
..+++|++|++++| .+..+|. +..+++|++|++.+|.
T Consensus 106 ~~l~~L~~L~Ls~N-~l~~l~~--l~~l~~L~~L~Ls~N~ 142 (605)
T 1m9s_A 106 KDLKKLKSLSLEHN-GISDING--LVHLPQLESLYLGNNK 142 (605)
T ss_dssp TTCTTCCEEECTTS-CCCCCGG--GGGCTTCSEEECCSSC
T ss_pred ccCCCCCEEEecCC-CCCCCcc--ccCCCccCEEECCCCc
Confidence 55666666666665 3444443 5555666666655544
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.61 E-value=1.5e-15 Score=150.84 Aligned_cols=222 Identities=12% Similarity=0.080 Sum_probs=117.3
Q ss_pred CCcccEEEccCccCcc-----cchhhhccCCCCcEEEcCCCCCC-cCCccc--CCCCCCcEeeCCCCcCccc-c----hh
Q 007687 235 CRHLLTLFLNQNKLQM-----IHNDFFRFMPSLKVLNLSHAELT-ELPVGI--SDLVSLQHLDLSESDISEL-P----GE 301 (593)
Q Consensus 235 ~~~Lr~L~l~~~~l~~-----~~~~~~~~l~~Lr~L~L~~~~l~-~lp~~i--~~L~~L~~L~L~~~~i~~l-p----~~ 301 (593)
...++.+.+.++.++. +.. +..+++|++|++++|.+. ..|..+ +.+++|++|++++|.++.. | ..
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~ 140 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALR--VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQ 140 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHH--HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHH
T ss_pred hcceeEEEEeCCcCCHHHHHHHHH--hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHH
Confidence 3345666666665432 111 223456888888888776 446666 7788888888888877642 2 23
Q ss_pred hhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCccc-c--hhhhcCCCCCceEEEE
Q 007687 302 LKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGAL-I--VEELLGLKYLEVISFT 378 (593)
Q Consensus 302 i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-~--~~~L~~l~~L~~L~i~ 378 (593)
+..+++|++|++++| .+..+|...++.+++|++|+++++... ... . ...++.+++|+.|.++
T Consensus 141 ~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~--------------~~~~~~~~~~~~~l~~L~~L~Ls 205 (310)
T 4glp_A 141 QWLKPGLKVLSIAQA-HSPAFSCEQVRAFPALTSLDLSDNPGL--------------GERGLMAALCPHKFPAIQNLALR 205 (310)
T ss_dssp TTBCSCCCEEEEECC-SSCCCCTTSCCCCTTCCEEECCSCTTC--------------HHHHHHTTSCTTSSCCCCSCBCC
T ss_pred hhhccCCCEEEeeCC-CcchhhHHHhccCCCCCEEECCCCCCc--------------cchhhhHHHhhhcCCCCCEEECC
Confidence 456778888888887 455565544777888888888777642 110 1 1112456666666666
Q ss_pred ecCccchhhhhhc-ccccccceEEEecccCCCceeeeccccc---cccccceeeccccccceeeeccCCcccccCCCCcc
Q 007687 379 LRSSHGLQSVLSS-HKLRCCTRALLLQCFNDSTSLEVSALAD---LKQLNRLRIAECKKLEELKMDYTGEVQQFVFHSLK 454 (593)
Q Consensus 379 ~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~l~~---l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~l~~L~ 454 (593)
.+....++..... .....+|+.|+++++.-....+ ..+.. +++|++|++++|... .+ +.. .+++|+
T Consensus 206 ~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p-~~~~~~~~~~~L~~L~Ls~N~l~-~l-p~~-------~~~~L~ 275 (310)
T 4glp_A 206 NTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVN-PSAPRCMWSSALNSLNLSFAGLE-QV-PKG-------LPAKLR 275 (310)
T ss_dssp SSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCC-SCCSSCCCCTTCCCEECCSSCCC-SC-CSC-------CCSCCS
T ss_pred CCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccch-hhHHhccCcCcCCEEECCCCCCC-ch-hhh-------hcCCCC
Confidence 5555443332111 1112345555555443211111 11222 245555555555432 12 111 124555
Q ss_pred EEEEeCCCCCCCCcccccCCCCCEEeeccC
Q 007687 455 KVEIVNSYKLKDLTFLVFAPNLESIEVLGC 484 (593)
Q Consensus 455 ~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c 484 (593)
.|+++++ .++.++.+..+++|+.|++++|
T Consensus 276 ~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 276 VLDLSSN-RLNRAPQPDELPEVDNLTLDGN 304 (310)
T ss_dssp CEECCSC-CCCSCCCTTSCCCCSCEECSST
T ss_pred EEECCCC-cCCCCchhhhCCCccEEECcCC
Confidence 5555555 4444444455555555555554
No 97
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.60 E-value=2.5e-16 Score=168.54 Aligned_cols=147 Identities=9% Similarity=0.019 Sum_probs=109.2
Q ss_pred hhhhhhhhhhccccchhhchHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhc--cchhhhhhhHHHHHHHHHHHHHHHH
Q 007687 14 AIFNRCLDCFLGKAAYIRNLQENVIALETELVKLIEAKNDVMARV---VNAER--QPMMTRLNKVQGWLSRVDAVKAEAD 88 (593)
Q Consensus 14 ~~~~~~~~~f~~~a~~~~~~~~~~~~l~~~~~~L~~~~~~i~~k~---~~a~~--~~~l~~~~~~~~W~~~l~~l~~~~~ 88 (593)
...+++|++|.++||.... .+++.+++++|+++| |+|.+ |+.++.+ .|..+ +.+.+..+
T Consensus 293 L~~~ea~~Lf~~~a~~~~~-----------~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~----~w~~~-~~l~~~l~ 356 (549)
T 2a5y_B 293 LEIDECYDFLEAYGMPMPV-----------GEKEEDVLNKTIELSSGNPATLMMFFKSCEPK----TFEKM-AQLNNKLE 356 (549)
T ss_dssp CCHHHHHHHHHHTSCCCC-------------CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS----SHHHH-HHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCC-----------chhHHHHHHHHHHHhCCChHHHHHHHHHhccc----hHHHH-HHhHHHhh
Confidence 3358999999999975421 123455699999999 88876 5456544 36554 55666555
Q ss_pred HH-----------HhhChHHHHHhHhcc-----------ccCCcccchhhhhHHHHHHhHHHHHHHHHhc--CCCCCch-
Q 007687 89 EL-----------IRHGSQEIEKLCLGG-----------YCSKNCHSSYKLGKQVAKKLRDKLIDCWIGE--GFLTERD- 143 (593)
Q Consensus 89 ~i-----------~~~~l~~~lk~Cf~~-----------yc~s~fp~~~~i~~~~~~~~~~~Li~~Wiae--Gfi~~~~- 143 (593)
+. .+.+||.++|.|| + || |+||+++.|+ +++|+|+ ||+.+.+
T Consensus 357 ~~~~~~i~~~l~~Sy~~L~~~lk~~f-~~Ls~~er~l~~~l-s~fp~~~~i~-----------i~~w~a~~~G~i~~~~~ 423 (549)
T 2a5y_B 357 SRGLVGVECITPYSYKSLAMALQRCV-EVLSDEDRSALAFA-VVMPPGVDIP-----------VKLWSCVIPVDICSNEE 423 (549)
T ss_dssp HHCSSTTCCCSSSSSSSHHHHHHHHH-HTSCHHHHHHTTGG-GSSCTTCCEE-----------HHHHHHHSCC-------
T ss_pred cccHHHHHHHHhcccccccHHHHHHH-hccchhhhhHhhhe-eeeCCCCeee-----------eeeeeeeccceeccCCC
Confidence 42 2337999999999 8 99 9999999995 5899999 9998843
Q ss_pred hhhHHHhHHHHHHHHHHhcccccc---CCCceeehhHHHHHHHHHHhhcc
Q 007687 144 RFVEQNQGYHILGILLHACLLEEG---GDGKVKMHDVIRDMALWIVCDIE 190 (593)
Q Consensus 144 ~~~~e~~~~~~~~~L~~~~ll~~~---~~~~~~mhdli~dl~~~i~~~~~ 190 (593)
+.+++++++ |+++|+++||++.. ...+|+|||++|++|++++.+++
T Consensus 424 ~~~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 424 EQLDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp CCCTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred CCCHHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 667888888 99999999999986 34579999999999999887643
No 98
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.60 E-value=1.6e-16 Score=163.01 Aligned_cols=245 Identities=15% Similarity=0.123 Sum_probs=156.0
Q ss_pred ccCccCcccchhhhccCCCCcEEEcCCCCCCc-----CCcccCCCCCCcEeeCCCCcCc----ccchhh-------hccc
Q 007687 243 LNQNKLQMIHNDFFRFMPSLKVLNLSHAELTE-----LPVGISDLVSLQHLDLSESDIS----ELPGEL-------KALV 306 (593)
Q Consensus 243 l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~-----lp~~i~~L~~L~~L~L~~~~i~----~lp~~i-------~~L~ 306 (593)
+....+..++.. +..+++|++|+|++|.+.. ++..+..+++|++|+|++|.+. .+|..+ ..++
T Consensus 16 l~~~~~~~l~~~-l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~ 94 (386)
T 2ca6_A 16 ITTEDEKSVFAV-LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCP 94 (386)
T ss_dssp CCSHHHHTTSHH-HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCT
T ss_pred CCHHHHHHHHHH-HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCC
Confidence 333445556655 7889999999999998874 4556889999999999998554 345444 6889
Q ss_pred cCceeeccccccccc-----cchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccchhhhcCC---------CCC
Q 007687 307 NLKCLNLEWTRNLIT-----IPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELLGL---------KYL 372 (593)
Q Consensus 307 ~L~~L~l~~~~~l~~-----lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l---------~~L 372 (593)
+|++|++++|. +.. +|.. +.++++|++|++.+|..... + .......+..+ ++|
T Consensus 95 ~L~~L~Ls~n~-l~~~~~~~l~~~-l~~~~~L~~L~L~~n~l~~~----------~-~~~l~~~l~~l~~~~~~~~~~~L 161 (386)
T 2ca6_A 95 KLHTVRLSDNA-FGPTAQEPLIDF-LSKHTPLEHLYLHNNGLGPQ----------A-GAKIARALQELAVNKKAKNAPPL 161 (386)
T ss_dssp TCCEEECCSCC-CCTTTHHHHHHH-HHHCTTCCEEECCSSCCHHH----------H-HHHHHHHHHHHHHHHHHHTCCCC
T ss_pred cccEEECCCCc-CCHHHHHHHHHH-HHhCCCCCEEECcCCCCCHH----------H-HHHHHHHHHHHhhhhhcccCCCC
Confidence 99999999994 444 6665 88999999999998875200 0 01122224344 788
Q ss_pred ceEEEEecCcc--chhhhhhcccccccceEEEecccCCCce----eeeccccccccccceeecccccc----ceeeeccC
Q 007687 373 EVISFTLRSSH--GLQSVLSSHKLRCCTRALLLQCFNDSTS----LEVSALADLKQLNRLRIAECKKL----EELKMDYT 442 (593)
Q Consensus 373 ~~L~i~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~----~~l~~~~~ 442 (593)
+.|.++.+... .++.+.......++|+.|+++++.-... +....+..+++|++|++++|... ..+ +.+.
T Consensus 162 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l-~~~l 240 (386)
T 2ca6_A 162 RSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL-AIAL 240 (386)
T ss_dssp CEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH-HHHG
T ss_pred cEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHH-HHHH
Confidence 88888876653 4444434334445788888877742210 11115566777888888777642 211 2222
Q ss_pred CcccccCCCCccEEEEeCCCCCCCC------ccc--ccCCCCCEEeeccCccchh----hcccCcccccccccCCC-CCC
Q 007687 443 GEVQQFVFHSLKKVEIVNSYKLKDL------TFL--VFAPNLESIEVLGCVAMEE----MVSVGKFAAVPEVTANL-NPF 509 (593)
Q Consensus 443 ~~~~~~~l~~L~~L~l~~c~~l~~l------~~l--~~l~~L~~L~l~~c~~l~~----~~~~~~~~~~~~~~~~~-~~~ 509 (593)
. .+++|+.|+|++| .++.. ..+ +.+++|++|+|++|..... ++. .+ ..+
T Consensus 241 ~-----~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~------------~l~~~l 302 (386)
T 2ca6_A 241 K-----SWPNLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT------------VIDEKM 302 (386)
T ss_dssp G-----GCTTCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH------------HHHHHC
T ss_pred c-----cCCCcCEEECCCC-CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH------------HHHhcC
Confidence 2 3677888888777 45443 123 3377788888877754331 222 22 346
Q ss_pred cccceeccccc
Q 007687 510 AKLQYLDLVGA 520 (593)
Q Consensus 510 ~~L~~L~l~~c 520 (593)
|+|++|+++++
T Consensus 303 ~~L~~L~l~~N 313 (386)
T 2ca6_A 303 PDLLFLELNGN 313 (386)
T ss_dssp TTCCEEECTTS
T ss_pred CCceEEEccCC
Confidence 77777777775
No 99
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.60 E-value=6.7e-15 Score=138.10 Aligned_cols=147 Identities=29% Similarity=0.366 Sum_probs=108.1
Q ss_pred cEEEEcCCcceecCCCCCCcceeEEEeeccCcccccc--cccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCC
Q 007687 195 NFLVYAGVGLTEAPEVKGWENVRRISLMDNQITNLSE--VATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAEL 272 (593)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l 272 (593)
..+.+.+..++.+|.... ++++.|++++|.+..++. +..+++|++|++++|.++.+++..|.++++|++|+|++|.+
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 345666666777765332 678888888888877764 36777888888888887777666677888888888888888
Q ss_pred CcCCcc-cCCCCCCcEeeCCCCcCcccc-hhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCC
Q 007687 273 TELPVG-ISDLVSLQHLDLSESDISELP-GELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASH 343 (593)
Q Consensus 273 ~~lp~~-i~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 343 (593)
+.+|.. +..+++|++|+|++|.++.++ ..+..+++|++|++++| .+..+|.+.+..+++|++|++.++..
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 877654 577888888888888877664 55777888888888887 56667666577788888888777654
No 100
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.59 E-value=4.4e-17 Score=177.28 Aligned_cols=99 Identities=23% Similarity=0.331 Sum_probs=61.8
Q ss_pred CCcceeEEEeeccCccc-----cccc-ccCCcccEEEccCccCcccc----hhhhccCCCCcEEEcCCC-CCCcCCcccC
Q 007687 212 GWENVRRISLMDNQITN-----LSEV-ATCRHLLTLFLNQNKLQMIH----NDFFRFMPSLKVLNLSHA-ELTELPVGIS 280 (593)
Q Consensus 212 ~~~~lr~L~l~~~~~~~-----l~~~-~~~~~Lr~L~l~~~~l~~~~----~~~~~~l~~Lr~L~L~~~-~l~~lp~~i~ 280 (593)
.++++++|++++|.+.. ++.. ..+++|++|++++|. ..+. ...+..+++|++|++++| .+..+|..+.
T Consensus 154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~ 232 (594)
T 2p1m_B 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQ 232 (594)
T ss_dssp HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHH
T ss_pred hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHh
Confidence 45788888888877554 3333 467788888888876 2222 222345688888888887 4556666777
Q ss_pred CCCCCcEeeCCCC-------cCcccchhhhccccCcee
Q 007687 281 DLVSLQHLDLSES-------DISELPGELKALVNLKCL 311 (593)
Q Consensus 281 ~L~~L~~L~L~~~-------~i~~lp~~i~~L~~L~~L 311 (593)
++++|++|++..+ .+..++..+.++++|+.|
T Consensus 233 ~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~L 270 (594)
T 2p1m_B 233 RAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCL 270 (594)
T ss_dssp HCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEE
T ss_pred cCCcceEcccccccCccchhhHHHHHHHHhcCCCcccc
Confidence 7777777775443 223344444455555544
No 101
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.59 E-value=5.7e-15 Score=142.61 Aligned_cols=157 Identities=22% Similarity=0.272 Sum_probs=130.4
Q ss_pred cceecCCCCCCcceeEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCcccCCC
Q 007687 203 GLTEAPEVKGWENVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISDL 282 (593)
Q Consensus 203 ~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L 282 (593)
.+..++....++++++|++++|.+..++....+++|++|++++|.++.+++ +..+++|++|++++|.++.+|....
T Consensus 30 ~i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~-- 105 (263)
T 1xeu_A 30 SVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS-- 105 (263)
T ss_dssp CTTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--
T ss_pred CcccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCcccc--
Confidence 334444455567899999999999999877889999999999999998887 8899999999999999998875444
Q ss_pred CCCcEeeCCCCcCcccchhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccc
Q 007687 283 VSLQHLDLSESDISELPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALI 362 (593)
Q Consensus 283 ~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 362 (593)
.+|++|++++|.++.+| .+..+++|++|++++| .++.+|. ++.+++|++|++.++... .
T Consensus 106 ~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~~--l~~l~~L~~L~L~~N~i~--------------~--- 164 (263)
T 1xeu_A 106 ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNN-KLKSIVM--LGFLSKLEVLDLHGNEIT--------------N--- 164 (263)
T ss_dssp SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTS-CCCBCGG--GGGCTTCCEEECTTSCCC--------------B---
T ss_pred CcccEEEccCCccCCCh-hhcCcccccEEECCCC-cCCCChH--HccCCCCCEEECCCCcCc--------------c---
Confidence 89999999999999886 4889999999999999 6778874 889999999999988764 2
Q ss_pred hhhhcCCCCCceEEEEecCccc
Q 007687 363 VEELLGLKYLEVISFTLRSSHG 384 (593)
Q Consensus 363 ~~~L~~l~~L~~L~i~~~~~~~ 384 (593)
+..+..+++|+.|+++.+....
T Consensus 165 ~~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 165 TGGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp CTTSTTCCCCCEEEEEEEEEEC
T ss_pred hHHhccCCCCCEEeCCCCcccC
Confidence 1567788889999988765443
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.58 E-value=4.5e-15 Score=159.82 Aligned_cols=168 Identities=23% Similarity=0.286 Sum_probs=117.2
Q ss_pred CCCcceeEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCcccCCCCCCcEeeC
Q 007687 211 KGWENVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISDLVSLQHLDL 290 (593)
Q Consensus 211 ~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L 290 (593)
..+++|+.|+++++.+..++.+..+++|+.|++++|.++.+++ +..+++|++|+|++|.+..+| .++.+++|++|+|
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEEC
T ss_pred hcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEe
Confidence 3445777777877777777777778888888888888777776 677888888888888777766 6777888888888
Q ss_pred CCCcCcccchhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccchhhhcCCC
Q 007687 291 SESDISELPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELLGLK 370 (593)
Q Consensus 291 ~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ 370 (593)
++|.+..+| .+..+++|+.|++++| .+..++. ++.+++|++|++.+|... . +..+..++
T Consensus 117 s~N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~~--l~~l~~L~~L~Ls~N~l~--------------~---~~~l~~l~ 175 (605)
T 1m9s_A 117 EHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQIS--------------D---IVPLAGLT 175 (605)
T ss_dssp TTSCCCCCG-GGGGCTTCSEEECCSS-CCCCCGG--GGSCTTCSEEECCSSCCC--------------C---CGGGTTCT
T ss_pred cCCCCCCCc-cccCCCccCEEECCCC-ccCCchh--hcccCCCCEEECcCCcCC--------------C---chhhccCC
Confidence 888777765 3777788888888877 5666643 777888888888777653 1 11166677
Q ss_pred CCceEEEEecCccchhhhhhcccccccceEEEeccc
Q 007687 371 YLEVISFTLRSSHGLQSVLSSHKLRCCTRALLLQCF 406 (593)
Q Consensus 371 ~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 406 (593)
+|+.|+++.+....++. ....++|+.|+|+++
T Consensus 176 ~L~~L~Ls~N~i~~l~~----l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 176 KLQNLYLSKNHISDLRA----LAGLKNLDVLELFSQ 207 (605)
T ss_dssp TCCEEECCSSCCCBCGG----GTTCTTCSEEECCSE
T ss_pred CCCEEECcCCCCCCChH----HccCCCCCEEEccCC
Confidence 77777777665554432 122345666666654
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.58 E-value=8.4e-15 Score=135.00 Aligned_cols=146 Identities=20% Similarity=0.324 Sum_probs=128.8
Q ss_pred CcEEEEcCCcceecCCCCCCcceeEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCC
Q 007687 194 ENFLVYAGVGLTEAPEVKGWENVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELT 273 (593)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~ 273 (593)
-..+.+.++.+..+|.+..++++++|++++|.+..++....+++|++|++++|.++......+..+++|++|++++|.++
T Consensus 46 L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~ 125 (197)
T 4ezg_A 46 LTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125 (197)
T ss_dssp CCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCB
T ss_pred ccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccC
Confidence 45688888888888888888999999999999988888899999999999999998744444899999999999999998
Q ss_pred c-CCcccCCCCCCcEeeCCCCc-CcccchhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCC
Q 007687 274 E-LPVGISDLVSLQHLDLSESD-ISELPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASH 343 (593)
Q Consensus 274 ~-lp~~i~~L~~L~~L~L~~~~-i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 343 (593)
. .|..++.+++|++|++++|. ++.+| .+..+++|++|++++| .+..++. +..+++|++|++.++..
T Consensus 126 ~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~~--l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 126 DSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYRG--IEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp GGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCTT--GGGCSSCCEEEECBC--
T ss_pred cHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChHH--hccCCCCCEEEeeCccc
Confidence 5 67889999999999999997 99998 6999999999999999 6778874 89999999999998764
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.58 E-value=1.4e-14 Score=135.99 Aligned_cols=146 Identities=18% Similarity=0.221 Sum_probs=101.1
Q ss_pred EEEEcCCcceecCCCCCCcceeEEEeeccCcccccc---cccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCC
Q 007687 196 FLVYAGVGLTEAPEVKGWENVRRISLMDNQITNLSE---VATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAEL 272 (593)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~---~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l 272 (593)
.+.+.++.++.+|... ...+++|++++|.+..++. +..+++|++|++++|.++.+++..|.++++|++|+|++|.+
T Consensus 15 ~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 93 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL 93 (220)
T ss_dssp EEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCcc
Confidence 4555666666666422 2456777777777777643 36677777777777777777766677777777777777777
Q ss_pred CcCCc-ccCCCCCCcEeeCCCCcCccc-chhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCC
Q 007687 273 TELPV-GISDLVSLQHLDLSESDISEL-PGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASH 343 (593)
Q Consensus 273 ~~lp~-~i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 343 (593)
+.+|. .++.+++|++|++++|.++.+ |..+..+++|++|++++| .++.+++..+..+++|++|++.++..
T Consensus 94 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 94 ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCC
Confidence 76644 477777777777777777766 456777777777777777 55556444477777777777776654
No 105
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.57 E-value=4.1e-15 Score=147.62 Aligned_cols=128 Identities=23% Similarity=0.169 Sum_probs=59.1
Q ss_pred ceeEEEeeccCccccccc----ccCCcccEEEccCccCccc----chhhhccCCCCcEEEcCCCCCCcCC-cccCCCCCC
Q 007687 215 NVRRISLMDNQITNLSEV----ATCRHLLTLFLNQNKLQMI----HNDFFRFMPSLKVLNLSHAELTELP-VGISDLVSL 285 (593)
Q Consensus 215 ~lr~L~l~~~~~~~l~~~----~~~~~Lr~L~l~~~~l~~~----~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L 285 (593)
++++|++++|.+...... ..+++|++|++++|.++.. +...+..+++|++|+|++|.+..+| ..++.+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 355555555554432211 3455555555555554431 1112334555555555555555442 345555555
Q ss_pred cEeeCCCCcCcc---cch--hhhccccCceeeccccccccccchh---hcCCCccCceeeccCCCC
Q 007687 286 QHLDLSESDISE---LPG--ELKALVNLKCLNLEWTRNLITIPRQ---LISNLSRLHVLRMFGASH 343 (593)
Q Consensus 286 ~~L~L~~~~i~~---lp~--~i~~L~~L~~L~l~~~~~l~~lp~~---~i~~l~~L~~L~l~~~~~ 343 (593)
++|++++|.+.. +|. .++.+++|++|++++| .++.+|.. .++.+++|++|+++++..
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l 236 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSL 236 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCC
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCC
Confidence 555555554432 221 1244555555555555 33333321 234455555555555443
No 106
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.56 E-value=3e-14 Score=132.49 Aligned_cols=146 Identities=27% Similarity=0.369 Sum_probs=118.0
Q ss_pred EEEEcCCcceecCCCCCCcceeEEEeeccCccccccc--ccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCC
Q 007687 196 FLVYAGVGLTEAPEVKGWENVRRISLMDNQITNLSEV--ATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELT 273 (593)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~ 273 (593)
.+.+.+.++..+|... .+++++|++++|.+..++.. ..+++|++|++++|.++.++...|..+++|++|++++|.++
T Consensus 11 ~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 89 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ 89 (208)
T ss_dssp EEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEEecCCCccCCCCCC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC
Confidence 4555666666676432 36889999999988887763 67889999999999988888877888999999999999888
Q ss_pred cCCc-ccCCCCCCcEeeCCCCcCcccchh-hhccccCceeeccccccccccchhhcCCCccCceeeccCCCC
Q 007687 274 ELPV-GISDLVSLQHLDLSESDISELPGE-LKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASH 343 (593)
Q Consensus 274 ~lp~-~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 343 (593)
.+|. .++.+++|++|++++|.++.+|.. +..+++|++|++++| .+..+|...+..+++|++|++.++..
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 90 SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCe
Confidence 8865 468889999999999988888765 678899999999988 67777776678889999999887754
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.56 E-value=1.7e-14 Score=135.29 Aligned_cols=149 Identities=19% Similarity=0.314 Sum_probs=126.9
Q ss_pred eEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcC-CcccCCCCCCcEeeCCCCcC
Q 007687 217 RRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTEL-PVGISDLVSLQHLDLSESDI 295 (593)
Q Consensus 217 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~i 295 (593)
+.++.+++.++.+|... .++|+.|++++|.++.+++..|..+++|++|+|++|.++.+ |..+..+++|++|+|++|.+
T Consensus 14 ~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp TEEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred CEEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 56788888888888642 27899999999999999987799999999999999999987 78999999999999999999
Q ss_pred cccchh-hhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccchhhhcCCCCCce
Q 007687 296 SELPGE-LKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELLGLKYLEV 374 (593)
Q Consensus 296 ~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~ 374 (593)
+.+|.. +..+++|++|++++| .+..++...+..+++|++|++.++... ......+..+++|+.
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~---------------~~~~~~~~~l~~L~~ 156 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQ---------------TIAKGTFSPLRAIQT 156 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS---------------CCCTTTTTTCTTCCE
T ss_pred CccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCcCC---------------EECHHHHhCCCCCCE
Confidence 999976 588999999999999 677776666999999999999998764 222334677888888
Q ss_pred EEEEecCc
Q 007687 375 ISFTLRSS 382 (593)
Q Consensus 375 L~i~~~~~ 382 (593)
|+++.+..
T Consensus 157 L~L~~N~~ 164 (220)
T 2v9t_B 157 MHLAQNPF 164 (220)
T ss_dssp EECCSSCE
T ss_pred EEeCCCCc
Confidence 88876554
No 108
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.55 E-value=4.7e-15 Score=150.59 Aligned_cols=259 Identities=16% Similarity=0.159 Sum_probs=141.0
Q ss_pred EEeeccCcccc-ccc-ccCCcccEEEccCccCcccch----hhhccCC-CCcEEEcCCCCCCcC-CcccCCC-----CCC
Q 007687 219 ISLMDNQITNL-SEV-ATCRHLLTLFLNQNKLQMIHN----DFFRFMP-SLKVLNLSHAELTEL-PVGISDL-----VSL 285 (593)
Q Consensus 219 L~l~~~~~~~l-~~~-~~~~~Lr~L~l~~~~l~~~~~----~~~~~l~-~Lr~L~L~~~~l~~l-p~~i~~L-----~~L 285 (593)
+.++.+.+.+. |.. ...++|++|++++|.++..+. ..+..++ +|++|+|++|.+... +..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 44556666643 333 344458888888888777765 5567777 788888888877754 4455544 788
Q ss_pred cEeeCCCCcCcccc-hh----hhcc-ccCceeeccccccccccchhhc----CC-CccCceeeccCCCCCCCCCCCcccc
Q 007687 286 QHLDLSESDISELP-GE----LKAL-VNLKCLNLEWTRNLITIPRQLI----SN-LSRLHVLRMFGASHNAFDGASEDSI 354 (593)
Q Consensus 286 ~~L~L~~~~i~~lp-~~----i~~L-~~L~~L~l~~~~~l~~lp~~~i----~~-l~~L~~L~l~~~~~~~~~~~~~~~~ 354 (593)
++|++++|.++..+ .. +..+ ++|++|++++| .++..+...+ .. .++|++|++.+|....
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~--------- 152 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI--------- 152 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG---------
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH---------
Confidence 88888888777544 32 3334 77888888888 4555443222 23 3578888877765420
Q ss_pred ccCCcccchhhhcCCC-CCceEEEEecCccchh--hhhhcccccccceEEEecccCCCceeeecccccc-ccccceeecc
Q 007687 355 LFGGGALIVEELLGLK-YLEVISFTLRSSHGLQ--SVLSSHKLRCCTRALLLQCFNDSTSLEVSALADL-KQLNRLRIAE 430 (593)
Q Consensus 355 ~~~~~~~~~~~L~~l~-~L~~L~i~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l-~~L~~L~l~~ 430 (593)
.........+..+. +|+.|+++.+...... .+. ..+... ++|++|++++
T Consensus 153 --~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~-------------------------~~l~~~~~~L~~L~Ls~ 205 (362)
T 3goz_A 153 --KSSDELIQILAAIPANVNSLNLRGNNLASKNCAELA-------------------------KFLASIPASVTSLDLSA 205 (362)
T ss_dssp --SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH-------------------------HHHHTSCTTCCEEECTT
T ss_pred --HHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHH-------------------------HHHHhCCCCCCEEECCC
Confidence 00011222333333 5555555433322111 000 122333 4777777777
Q ss_pred ccccceeeeccCCcccccCCCCccEEEEeCCCCCCCCcc------cccCCCCCEEeeccCccchhhcccCcccccccccC
Q 007687 431 CKKLEELKMDYTGEVQQFVFHSLKKVEIVNSYKLKDLTF------LVFAPNLESIEVLGCVAMEEMVSVGKFAAVPEVTA 504 (593)
Q Consensus 431 ~~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~------l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 504 (593)
|..... .............++|+.|++++| .+++.+. +..+++|++|++++|..- .+.. ..+..+..
T Consensus 206 N~i~~~-~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~-~i~~----~~~~~l~~ 278 (362)
T 3goz_A 206 NLLGLK-SYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVK-NMSK----EQCKALGA 278 (362)
T ss_dssp SCGGGS-CHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHT-TCCH----HHHHHHHT
T ss_pred CCCChh-HHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCCcc-ccCH----HHHHHHHH
Confidence 653220 000000000011357888888887 5665432 466788888888888510 0000 00111222
Q ss_pred CCCCCcccceecccccc
Q 007687 505 NLNPFAKLQYLDLVGAI 521 (593)
Q Consensus 505 ~~~~~~~L~~L~l~~c~ 521 (593)
.+..+++|+.|++++.+
T Consensus 279 ~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 279 AFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TSTTCCEEEEECTTSCB
T ss_pred HhccCCceEEEecCCCc
Confidence 45677788888888753
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.54 E-value=7e-15 Score=142.03 Aligned_cols=167 Identities=22% Similarity=0.293 Sum_probs=130.2
Q ss_pred CcceeEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCcccCCCCCCcEeeCCC
Q 007687 213 WENVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISDLVSLQHLDLSE 292 (593)
Q Consensus 213 ~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~ 292 (593)
+.++..+.+.++.+.+++....+++|++|++++|.++.++. +..+++|++|++++|.++.+|. ++.+++|++|++++
T Consensus 18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCS
T ss_pred HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccchH--HhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCC
Confidence 45666777888888888877889999999999999988873 8889999999999999998876 99999999999999
Q ss_pred CcCcccchhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccchhhhcCCCCC
Q 007687 293 SDISELPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELLGLKYL 372 (593)
Q Consensus 293 ~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L 372 (593)
|.++.+|.... ++|++|++++| .++.+|. ++++++|++|++.++... . +..++.+++|
T Consensus 95 N~l~~l~~~~~--~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~Ls~N~i~--------------~---~~~l~~l~~L 152 (263)
T 1xeu_A 95 NRLKNLNGIPS--ACLSRLFLDNN-ELRDTDS--LIHLKNLEILSIRNNKLK--------------S---IVMLGFLSKL 152 (263)
T ss_dssp SCCSCCTTCCC--SSCCEEECCSS-CCSBSGG--GTTCTTCCEEECTTSCCC--------------B---CGGGGGCTTC
T ss_pred CccCCcCcccc--CcccEEEccCC-ccCCChh--hcCcccccEEECCCCcCC--------------C---ChHHccCCCC
Confidence 99998886433 89999999999 6777775 889999999999988764 1 2346666666
Q ss_pred ceEEEEecCccchhhhhhcccccccceEEEecccCCCceeeeccccccccccceeeccccc
Q 007687 373 EVISFTLRSSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIAECKK 433 (593)
Q Consensus 373 ~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 433 (593)
+.|+++.+..... ..+..+++|+.|+++++..
T Consensus 153 ~~L~L~~N~i~~~-----------------------------~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 153 EVLDLHGNEITNT-----------------------------GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp CEEECTTSCCCBC-----------------------------TTSTTCCCCCEEEEEEEEE
T ss_pred CEEECCCCcCcch-----------------------------HHhccCCCCCEEeCCCCcc
Confidence 6666654333222 3355667777777777653
No 110
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.54 E-value=2.5e-14 Score=133.07 Aligned_cols=146 Identities=25% Similarity=0.303 Sum_probs=118.3
Q ss_pred eEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCc-ccCCCCCCcEeeCCCCcC
Q 007687 217 RRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPV-GISDLVSLQHLDLSESDI 295 (593)
Q Consensus 217 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~i 295 (593)
+.++..++.+..+|.. ..++|++|++++|.++.++...|..+++|++|++++|.++.+|. .+..+++|++|++++|.+
T Consensus 10 ~~v~c~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTG-IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCCCccCCCCC-CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 4566777777777653 35689999999999999998888999999999999999998866 468999999999999999
Q ss_pred cccchh-hhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccchhhhcCCCCCce
Q 007687 296 SELPGE-LKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELLGLKYLEV 374 (593)
Q Consensus 296 ~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~ 374 (593)
+.+|.. +..+++|++|++++| .+..+|...+.++++|++|++.++... ......+..+++|+.
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~---------------~~~~~~~~~l~~L~~ 152 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLK---------------SVPDGVFDRLTSLQY 152 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS---------------CCCTTTTTTCTTCCE
T ss_pred CccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCccc---------------eeCHHHhccCCCccE
Confidence 988865 689999999999999 678888776889999999999988653 111223555666666
Q ss_pred EEEEe
Q 007687 375 ISFTL 379 (593)
Q Consensus 375 L~i~~ 379 (593)
|+++.
T Consensus 153 L~l~~ 157 (208)
T 2o6s_A 153 IWLHD 157 (208)
T ss_dssp EECCS
T ss_pred EEecC
Confidence 66553
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.53 E-value=4.4e-14 Score=132.50 Aligned_cols=150 Identities=15% Similarity=0.295 Sum_probs=125.9
Q ss_pred eEEEeeccCcccccccccCCcccEEEccCccCcccc-hhhhccCCCCcEEEcCCCCCCcCCc-ccCCCCCCcEeeCCCCc
Q 007687 217 RRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIH-NDFFRFMPSLKVLNLSHAELTELPV-GISDLVSLQHLDLSESD 294 (593)
Q Consensus 217 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~-~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~ 294 (593)
++++++++.+..+|.. -...++.|++++|.++.++ ...|..+++|++|+|++|.++.++. .++.+++|++|++++|.
T Consensus 14 ~~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 5789999999988864 2456799999999999884 4568999999999999999998865 89999999999999999
Q ss_pred Ccccchh-hhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccchhhhcCCCCCc
Q 007687 295 ISELPGE-LKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELLGLKYLE 373 (593)
Q Consensus 295 i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~ 373 (593)
++.+|.. +..+++|++|++++| .+..+++..+..+++|++|++.++... ...+..+..+++|+
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~---------------~~~~~~~~~l~~L~ 156 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQIT---------------TVAPGAFDTLHSLS 156 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSCCC---------------CBCTTTTTTCTTCC
T ss_pred cCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCcCC---------------EECHHHhcCCCCCC
Confidence 9988754 889999999999999 677775555999999999999998763 23356677888999
Q ss_pred eEEEEecCcc
Q 007687 374 VISFTLRSSH 383 (593)
Q Consensus 374 ~L~i~~~~~~ 383 (593)
.|+++.+...
T Consensus 157 ~L~L~~N~l~ 166 (220)
T 2v70_A 157 TLNLLANPFN 166 (220)
T ss_dssp EEECCSCCEE
T ss_pred EEEecCcCCc
Confidence 9998866543
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.53 E-value=2.6e-14 Score=144.95 Aligned_cols=148 Identities=25% Similarity=0.350 Sum_probs=124.3
Q ss_pred cEEEEcCCcceecCCCCCCcceeEEEeeccCccccccc--c-cCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCC
Q 007687 195 NFLVYAGVGLTEAPEVKGWENVRRISLMDNQITNLSEV--A-TCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAE 271 (593)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~--~-~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~ 271 (593)
+.+.+.+..+..+|... .+.++.|++++|.+..++.. . .+++|++|++++|.++.+++..|..+++|++|+|++|.
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 45677777888888532 35789999999999988765 3 88999999999999999988778999999999999999
Q ss_pred CCcCCc-ccCCCCCCcEeeCCCCcCccc-chhhhccccCceeeccccccccccchhhc---CCCccCceeeccCCCCC
Q 007687 272 LTELPV-GISDLVSLQHLDLSESDISEL-PGELKALVNLKCLNLEWTRNLITIPRQLI---SNLSRLHVLRMFGASHN 344 (593)
Q Consensus 272 l~~lp~-~i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~i---~~l~~L~~L~l~~~~~~ 344 (593)
++.+|. .+..+.+|++|+|++|.++.+ |..+..+++|++|++++| .+..+|..++ ..+++|++|++.++...
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 998855 689999999999999999977 467889999999999999 7888888755 67999999999988763
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.52 E-value=6.9e-14 Score=132.09 Aligned_cols=149 Identities=22% Similarity=0.272 Sum_probs=126.0
Q ss_pred eeEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCc-ccCCCCCCcEeeCCCCc
Q 007687 216 VRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPV-GISDLVSLQHLDLSESD 294 (593)
Q Consensus 216 lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~ 294 (593)
.+.++.+++.+..+|... .++|++|++++|.++.+++..|..+++|++|+|++|.+..+|. .+..+++|++|+|++|.
T Consensus 21 ~~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGI-PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEeEccCCCcCccCCCC-CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 456888888888888643 3899999999999999987779999999999999999999975 57999999999999999
Q ss_pred Ccccchh-hhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccchhhhcCCCCCc
Q 007687 295 ISELPGE-LKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELLGLKYLE 373 (593)
Q Consensus 295 i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~ 373 (593)
++.+|.. +..+++|++|++++| .+..+|.. +..+++|++|++.++... ......+..+++|+
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~---------------~~~~~~~~~l~~L~ 162 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCN-KLTELPRG-IERLTHLTHLALDQNQLK---------------SIPHGAFDRLSSLT 162 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS-CCCSCCTT-GGGCTTCSEEECCSSCCC---------------CCCTTTTTTCTTCC
T ss_pred CCccChhHhCcchhhCeEeccCC-cccccCcc-cccCCCCCEEECCCCcCC---------------ccCHHHHhCCCCCC
Confidence 9999865 688999999999999 68899987 899999999999998763 12224467778888
Q ss_pred eEEEEecCc
Q 007687 374 VISFTLRSS 382 (593)
Q Consensus 374 ~L~i~~~~~ 382 (593)
.|.+..+..
T Consensus 163 ~L~l~~N~~ 171 (229)
T 3e6j_A 163 HAYLFGNPW 171 (229)
T ss_dssp EEECTTSCB
T ss_pred EEEeeCCCc
Confidence 888876543
No 114
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.50 E-value=2.3e-14 Score=129.46 Aligned_cols=130 Identities=17% Similarity=0.263 Sum_probs=97.1
Q ss_pred CCCcceeEEEeeccCcccccccccCC-cccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCccc-CCCCCCcEe
Q 007687 211 KGWENVRRISLMDNQITNLSEVATCR-HLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGI-SDLVSLQHL 288 (593)
Q Consensus 211 ~~~~~lr~L~l~~~~~~~l~~~~~~~-~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i-~~L~~L~~L 288 (593)
..+.+++.|++++|.+..++....+. +|++|++++|.++.++ . +..+++|++|++++|.++.+|..+ +.+++|++|
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~-~-l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-G-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-C-CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCccc-c-cccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 34467888888888888776665444 8888888888877773 2 777888888888888888776554 778888888
Q ss_pred eCCCCcCcccch--hhhccccCceeeccccccccccchh---hcCCCccCceeeccCCCC
Q 007687 289 DLSESDISELPG--ELKALVNLKCLNLEWTRNLITIPRQ---LISNLSRLHVLRMFGASH 343 (593)
Q Consensus 289 ~L~~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~---~i~~l~~L~~L~l~~~~~ 343 (593)
++++|.++.+|. .++.+++|++|++++| .+..+|.. +++.+++|++|++.++..
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 888888887776 6778888888888888 45666653 467788888887776653
No 115
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.50 E-value=3e-14 Score=124.88 Aligned_cols=123 Identities=26% Similarity=0.301 Sum_probs=100.9
Q ss_pred cceeEEEeeccCcc--ccccc-ccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCc-CCcccCCCCCCcEee
Q 007687 214 ENVRRISLMDNQIT--NLSEV-ATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTE-LPVGISDLVSLQHLD 289 (593)
Q Consensus 214 ~~lr~L~l~~~~~~--~l~~~-~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~-lp~~i~~L~~L~~L~ 289 (593)
+++++|++++|.+. .++.. ..+++|++|++++|.++.+ ..+..+++|++|++++|.++. +|..++.+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 68889999988887 67765 7788899999999888877 337888899999999998887 777777788999999
Q ss_pred CCCCcCcccc--hhhhccccCceeeccccccccccch---hhcCCCccCceeecc
Q 007687 290 LSESDISELP--GELKALVNLKCLNLEWTRNLITIPR---QLISNLSRLHVLRMF 339 (593)
Q Consensus 290 L~~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~---~~i~~l~~L~~L~l~ 339 (593)
+++|.++.+| ..++.+++|++|++++| .+..+|. ..++.+++|++|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 9999888765 77888899999999888 5666665 457888888888765
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.50 E-value=3.8e-14 Score=126.97 Aligned_cols=128 Identities=24% Similarity=0.294 Sum_probs=107.4
Q ss_pred cceeEEEeeccCcc--ccccc-ccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCc-CCcccCCCCCCcEee
Q 007687 214 ENVRRISLMDNQIT--NLSEV-ATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTE-LPVGISDLVSLQHLD 289 (593)
Q Consensus 214 ~~lr~L~l~~~~~~--~l~~~-~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~-lp~~i~~L~~L~~L~ 289 (593)
+++++|++++|.+. .+|.. ..+++|++|++++|.++.+ . .+..+++|++|++++|.+.. +|..++.+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-S-NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-S-SCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-h-hhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 68899999999888 77776 7889999999999998887 3 38889999999999998887 677777789999999
Q ss_pred CCCCcCcccc--hhhhccccCceeeccccccccccch---hhcCCCccCceeeccCCCCC
Q 007687 290 LSESDISELP--GELKALVNLKCLNLEWTRNLITIPR---QLISNLSRLHVLRMFGASHN 344 (593)
Q Consensus 290 L~~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~---~~i~~l~~L~~L~l~~~~~~ 344 (593)
+++|.++.+| ..+..+++|++|++++| .+..+|. ..+..+++|++|++.++...
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 9999998876 67888999999999998 5667765 34888999999998887654
No 117
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.49 E-value=3.6e-14 Score=144.09 Aligned_cols=157 Identities=18% Similarity=0.226 Sum_probs=114.6
Q ss_pred cceeEEEeeccCcccccc------cccCC-cccEEEccCccCcccchhhhccC-----CCCcEEEcCCCCCCcCC-cc--
Q 007687 214 ENVRRISLMDNQITNLSE------VATCR-HLLTLFLNQNKLQMIHNDFFRFM-----PSLKVLNLSHAELTELP-VG-- 278 (593)
Q Consensus 214 ~~lr~L~l~~~~~~~l~~------~~~~~-~Lr~L~l~~~~l~~~~~~~~~~l-----~~Lr~L~L~~~~l~~lp-~~-- 278 (593)
+++++|++++|.+...+. +..++ +|++|++++|.++......+..+ ++|++|+|++|.++..+ ..
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 469999999999988754 26677 89999999999988766556664 99999999999998654 33
Q ss_pred --cCCC-CCCcEeeCCCCcCcccch-h----hhc-cccCceeecccccccc-----ccchhhcCCCc-cCceeeccCCCC
Q 007687 279 --ISDL-VSLQHLDLSESDISELPG-E----LKA-LVNLKCLNLEWTRNLI-----TIPRQLISNLS-RLHVLRMFGASH 343 (593)
Q Consensus 279 --i~~L-~~L~~L~L~~~~i~~lp~-~----i~~-L~~L~~L~l~~~~~l~-----~lp~~~i~~l~-~L~~L~l~~~~~ 343 (593)
+..+ ++|++|++++|.++..+. . +.. .++|++|++++| .++ .++.. +..++ +|++|++.+|..
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~-l~~~~~~L~~L~Ls~n~l 179 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQI-LAAIPANVNSLNLRGNNL 179 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHH-HHTSCTTCCEEECTTSCG
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHH-HhcCCccccEeeecCCCC
Confidence 4555 899999999999987663 2 333 369999999999 454 34443 55665 999999999876
Q ss_pred CCCCCCCccccccCCcccchhhhcCC-CCCceEEEEecCcc
Q 007687 344 NAFDGASEDSILFGGGALIVEELLGL-KYLEVISFTLRSSH 383 (593)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~L~~l-~~L~~L~i~~~~~~ 383 (593)
.. .........+... ++|+.|+++.+...
T Consensus 180 ~~-----------~~~~~l~~~l~~~~~~L~~L~Ls~N~i~ 209 (362)
T 3goz_A 180 AS-----------KNCAELAKFLASIPASVTSLDLSANLLG 209 (362)
T ss_dssp GG-----------SCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred ch-----------hhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence 30 0011122345555 47888887765543
No 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.49 E-value=2e-13 Score=145.46 Aligned_cols=112 Identities=23% Similarity=0.350 Sum_probs=50.7
Q ss_pred ceeEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCcccCCCCCCcEeeCCCCc
Q 007687 215 NVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISDLVSLQHLDLSESD 294 (593)
Q Consensus 215 ~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~ 294 (593)
+++.|++++|.+..+|... +++|++|++++|.++.+| ..+++|++|++++|.++.+|. +++ +|++|++++|.
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~ 131 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ 131 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc
Confidence 3444444444444444321 244445555544444444 123444555555554444444 333 44555555544
Q ss_pred CcccchhhhccccCceeeccccccccccchhhcCCCccCceeeccCCC
Q 007687 295 ISELPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGAS 342 (593)
Q Consensus 295 i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 342 (593)
++.+|. .+++|++|++++| .++.+|. .+++|++|++.+|.
T Consensus 132 l~~lp~---~l~~L~~L~Ls~N-~l~~lp~----~l~~L~~L~Ls~N~ 171 (571)
T 3cvr_A 132 LTMLPE---LPALLEYINADNN-QLTMLPE----LPTSLEVLSVRNNQ 171 (571)
T ss_dssp CSCCCC---CCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSC
T ss_pred CCCCCC---cCccccEEeCCCC-ccCcCCC----cCCCcCEEECCCCC
Confidence 444444 3444455555444 3333443 23444444444443
No 119
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.43 E-value=8.5e-13 Score=120.87 Aligned_cols=125 Identities=19% Similarity=0.321 Sum_probs=104.2
Q ss_pred eEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCC-cccCCCCCCcEeeCCCCcC
Q 007687 217 RRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELP-VGISDLVSLQHLDLSESDI 295 (593)
Q Consensus 217 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~i 295 (593)
++++++++.+..+|.. -.++|++|++++|.++.+|.. |..+++|++|+|++|.++.++ ..|..+++|++|+|++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~-~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGG-GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHHH-hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 4677778888887754 236889999999999888854 889999999999999999885 4689999999999999999
Q ss_pred cccch-hhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCC
Q 007687 296 SELPG-ELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHN 344 (593)
Q Consensus 296 ~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 344 (593)
+.+|. .+..+++|++|++++| .+..+|.+.+..+++|++|++.++...
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCee
Confidence 98874 5888999999999998 678888877888999999999887653
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.42 E-value=1.4e-12 Score=116.73 Aligned_cols=131 Identities=21% Similarity=0.242 Sum_probs=114.6
Q ss_pred CcEEEEcCCcce--ecCCC-CCCcceeEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCC
Q 007687 194 ENFLVYAGVGLT--EAPEV-KGWENVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHA 270 (593)
Q Consensus 194 ~~~~~~~~~~~~--~~~~~-~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~ 270 (593)
-..+.+.++.+. .+|.. ..++++++|++++|.+..++....+++|++|++++|.++...+..+..+++|++|++++|
T Consensus 26 L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 105 (168)
T 2ell_A 26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN 105 (168)
T ss_dssp CSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS
T ss_pred CCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC
Confidence 566778888777 77754 778999999999999999866689999999999999998855555788999999999999
Q ss_pred CCCcCC--cccCCCCCCcEeeCCCCcCcccch----hhhccccCceeeccccccccccchh
Q 007687 271 ELTELP--VGISDLVSLQHLDLSESDISELPG----ELKALVNLKCLNLEWTRNLITIPRQ 325 (593)
Q Consensus 271 ~l~~lp--~~i~~L~~L~~L~L~~~~i~~lp~----~i~~L~~L~~L~l~~~~~l~~lp~~ 325 (593)
.++.+| ..++.+++|++|++++|.++.+|. .+..+++|++|++++| ....+|.+
T Consensus 106 ~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~ 165 (168)
T 2ell_A 106 KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPDS 165 (168)
T ss_dssp SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCSS
T ss_pred ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC-Chhhcccc
Confidence 999986 789999999999999999999987 7899999999999999 56777753
No 121
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.42 E-value=4.7e-13 Score=135.64 Aligned_cols=149 Identities=23% Similarity=0.296 Sum_probs=129.8
Q ss_pred cEEEEcCCcceecCC--CC-CCcceeEEEeeccCcccccc--cccCCcccEEEccCccCcccchhhhccCCCCcEEEcCC
Q 007687 195 NFLVYAGVGLTEAPE--VK-GWENVRRISLMDNQITNLSE--VATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSH 269 (593)
Q Consensus 195 ~~~~~~~~~~~~~~~--~~-~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~ 269 (593)
..+.+.++.+..++. +. .+++|++|++++|.+..++. +..+++|++|++++|.++.+++..|..+++|++|+|++
T Consensus 42 ~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 121 (361)
T 2xot_A 42 ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYN 121 (361)
T ss_dssp SEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCC
Confidence 467788888888764 33 78999999999999999875 48899999999999999999988899999999999999
Q ss_pred CCCCcC-CcccCCCCCCcEeeCCCCcCcccchhh----hccccCceeeccccccccccchhhcCCCcc--CceeeccCCC
Q 007687 270 AELTEL-PVGISDLVSLQHLDLSESDISELPGEL----KALVNLKCLNLEWTRNLITIPRQLISNLSR--LHVLRMFGAS 342 (593)
Q Consensus 270 ~~l~~l-p~~i~~L~~L~~L~L~~~~i~~lp~~i----~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~--L~~L~l~~~~ 342 (593)
|.+..+ |..+..+++|++|+|++|.++.+|..+ ..+++|++|++++| .+..+|...+..++. |+.|++.++.
T Consensus 122 N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 122 NHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHHHhhhccHhhcceEEecCCC
Confidence 999987 678999999999999999999999775 67999999999999 788888766888887 4889999877
Q ss_pred CC
Q 007687 343 HN 344 (593)
Q Consensus 343 ~~ 344 (593)
..
T Consensus 201 ~~ 202 (361)
T 2xot_A 201 LE 202 (361)
T ss_dssp EE
T ss_pred cc
Confidence 53
No 122
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.41 E-value=1.2e-12 Score=118.15 Aligned_cols=127 Identities=24% Similarity=0.340 Sum_probs=103.7
Q ss_pred eeEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCc-ccCCCCCCcEeeCCCCc
Q 007687 216 VRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPV-GISDLVSLQHLDLSESD 294 (593)
Q Consensus 216 lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~ 294 (593)
.+.+++.++.+..+|.. ..++|+.|++++|.++.++...|..+++|++|++++|.++.+|. .++.+++|++|++++|.
T Consensus 9 ~~~l~~~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TTEEECCSSCCSSCCTT-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEecCCCCccCCCC-CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 35677777777777643 34688999999999888888778889999999999999888865 46889999999999999
Q ss_pred Ccccchh-hhccccCceeeccccccccccchhhcCCCccCceeeccCCCCC
Q 007687 295 ISELPGE-LKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHN 344 (593)
Q Consensus 295 i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 344 (593)
++.+|.. +..+++|++|++++| .++.+|..++..+++|++|++.++...
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCee
Confidence 9888765 578899999999998 677888876788999999999887653
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.41 E-value=7.9e-13 Score=121.06 Aligned_cols=126 Identities=25% Similarity=0.361 Sum_probs=102.5
Q ss_pred eEEEeeccCcccccccccCCcccEEEccCccCcccchh-hhccCCCCcEEEcCCCCCCcC-CcccCCCCCCcEeeCCCCc
Q 007687 217 RRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHND-FFRFMPSLKVLNLSHAELTEL-PVGISDLVSLQHLDLSESD 294 (593)
Q Consensus 217 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~-~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~ 294 (593)
++++++++.+..+|... ..+|++|++++|.++.+++. .|..+++|++|+|++|.++.+ |..++.+++|++|++++|.
T Consensus 11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 57788888888877642 23889999999998888764 578899999999999999877 7789999999999999999
Q ss_pred Ccccchh-hhccccCceeeccccccccccchhhcCCCccCceeeccCCCCC
Q 007687 295 ISELPGE-LKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHN 344 (593)
Q Consensus 295 i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 344 (593)
++.+|.. +..+++|++|++++| .+..+++..++.+++|++|++.++...
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCccCHHHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 9887754 788999999999999 566554444888999999999887653
No 124
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.41 E-value=1.6e-12 Score=138.54 Aligned_cols=133 Identities=20% Similarity=0.243 Sum_probs=116.0
Q ss_pred CcEEEEcCCcceecCCCCCCcceeEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCC
Q 007687 194 ENFLVYAGVGLTEAPEVKGWENVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELT 273 (593)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~ 273 (593)
-..+.+.++.+..+|... .+++++|++++|.+..+| ..+++|++|++++|.++.+|. +.. +|++|+|++|.++
T Consensus 61 L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~N~l~ 133 (571)
T 3cvr_A 61 FSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDNNQLT 133 (571)
T ss_dssp CSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCSSCCS
T ss_pred ccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCCCcCC
Confidence 456778888888888633 378999999999999998 678999999999999999887 444 9999999999999
Q ss_pred cCCcccCCCCCCcEeeCCCCcCcccchhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCC
Q 007687 274 ELPVGISDLVSLQHLDLSESDISELPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHN 344 (593)
Q Consensus 274 ~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 344 (593)
.+|. .+++|++|++++|.++.+|. .+++|++|++++| .++.+|. +. ++|++|++.+|...
T Consensus 134 ~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~L~~lp~--l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 134 MLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNN-QLTFLPE--LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp CCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCSCCCC--CC--TTCCEEECCSSCCS
T ss_pred CCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCC-CCCCcch--hh--CCCCEEECcCCCCC
Confidence 9987 68999999999999999997 6789999999999 6778887 55 89999999988764
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.39 E-value=4.9e-13 Score=117.04 Aligned_cols=108 Identities=21% Similarity=0.290 Sum_probs=95.5
Q ss_pred ccCCcccEEEccCccCc--ccchhhhccCCCCcEEEcCCCCCCcCCcccCCCCCCcEeeCCCCcCcc-cchhhhccccCc
Q 007687 233 ATCRHLLTLFLNQNKLQ--MIHNDFFRFMPSLKVLNLSHAELTELPVGISDLVSLQHLDLSESDISE-LPGELKALVNLK 309 (593)
Q Consensus 233 ~~~~~Lr~L~l~~~~l~--~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~-lp~~i~~L~~L~ 309 (593)
...++|+.|++++|.++ .+|.. +..+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..++.+++|+
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CCCccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 34678999999999988 77764 78999999999999999988 789999999999999999997 888888899999
Q ss_pred eeeccccccccccc--hhhcCCCccCceeeccCCCCC
Q 007687 310 CLNLEWTRNLITIP--RQLISNLSRLHVLRMFGASHN 344 (593)
Q Consensus 310 ~L~l~~~~~l~~lp--~~~i~~l~~L~~L~l~~~~~~ 344 (593)
+|++++| .++.+| .. ++.+++|++|++.++...
T Consensus 92 ~L~ls~N-~i~~~~~~~~-~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 92 HLNLSGN-KIKDLSTIEP-LKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp EEECTTS-CCCSHHHHGG-GGGCTTCCEEECTTCGGG
T ss_pred EEECCCC-cCCChHHHHH-HhhCCCCCEEeCcCCccc
Confidence 9999999 577765 44 899999999999998763
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.38 E-value=7.6e-13 Score=119.41 Aligned_cols=124 Identities=21% Similarity=0.272 Sum_probs=111.9
Q ss_pred CcEEEEcCCcceecCCCCCCc-ceeEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCC
Q 007687 194 ENFLVYAGVGLTEAPEVKGWE-NVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAEL 272 (593)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~-~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l 272 (593)
-..+.+.++.+..++....+. ++++|++++|.+..++.+..+++|++|++++|.++.+|+..+..+++|++|++++|.+
T Consensus 21 L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i 100 (176)
T 1a9n_A 21 DRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 100 (176)
T ss_dssp CEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCC
T ss_pred ceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcC
Confidence 356777888888887766655 9999999999999997779999999999999999999988779999999999999999
Q ss_pred CcCCc--ccCCCCCCcEeeCCCCcCcccchh----hhccccCceeeccccc
Q 007687 273 TELPV--GISDLVSLQHLDLSESDISELPGE----LKALVNLKCLNLEWTR 317 (593)
Q Consensus 273 ~~lp~--~i~~L~~L~~L~L~~~~i~~lp~~----i~~L~~L~~L~l~~~~ 317 (593)
..+|. .++.+++|++|++++|.++.+|.. ++.+++|++|++++|.
T Consensus 101 ~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 101 VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 99987 899999999999999999999975 8999999999999984
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.36 E-value=1.6e-12 Score=139.03 Aligned_cols=127 Identities=20% Similarity=0.294 Sum_probs=104.0
Q ss_pred CcceeEEE-eeccCccccccc---------ccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCcccCCC
Q 007687 213 WENVRRIS-LMDNQITNLSEV---------ATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISDL 282 (593)
Q Consensus 213 ~~~lr~L~-l~~~~~~~l~~~---------~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L 282 (593)
+++++.|+ +..|.+..++.. .....|++|++++|.++.+|. ++.+++|++|+|++|.++.+|..++.+
T Consensus 408 l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l 485 (567)
T 1dce_A 408 FSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAAL 485 (567)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGC
T ss_pred HHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC--ccccccCcEeecCcccccccchhhhcC
Confidence 44666666 454443333221 112358999999999999886 899999999999999999999999999
Q ss_pred CCCcEeeCCCCcCcccchhhhccccCceeecccccccccc--chhhcCCCccCceeeccCCCCC
Q 007687 283 VSLQHLDLSESDISELPGELKALVNLKCLNLEWTRNLITI--PRQLISNLSRLHVLRMFGASHN 344 (593)
Q Consensus 283 ~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~l--p~~~i~~l~~L~~L~l~~~~~~ 344 (593)
++|++|+|++|.++.+| .++++++|++|++++| .+..+ |.. ++.+++|++|++.++...
T Consensus 486 ~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~-l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 486 RCLEVLQASDNALENVD-GVANLPRLQELLLCNN-RLQQSAAIQP-LVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp TTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS-CCCSSSTTGG-GGGCTTCCEEECTTSGGG
T ss_pred CCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC-CCCCCCCcHH-HhcCCCCCEEEecCCcCC
Confidence 99999999999999998 7999999999999999 67777 665 999999999999998764
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.35 E-value=4.4e-12 Score=116.10 Aligned_cols=122 Identities=27% Similarity=0.327 Sum_probs=108.7
Q ss_pred cEEEEcCCcceecCCCCCCcceeEEEeeccCccccccc-ccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCC
Q 007687 195 NFLVYAGVGLTEAPEVKGWENVRRISLMDNQITNLSEV-ATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELT 273 (593)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~-~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~ 273 (593)
..+.+.+..+..+|... .+++++|++++|.+..+|.. ..+++|++|++++|.++.+++..|.++++|++|+|++|.++
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 45677788888888533 37999999999999998754 88999999999999999999888999999999999999999
Q ss_pred cCCc-ccCCCCCCcEeeCCCCcCcccchh-hhccccCceeeccccc
Q 007687 274 ELPV-GISDLVSLQHLDLSESDISELPGE-LKALVNLKCLNLEWTR 317 (593)
Q Consensus 274 ~lp~-~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~ 317 (593)
.+|. .+..+++|++|+|++|.++.+|.. +..+++|++|++++|.
T Consensus 92 ~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 8854 799999999999999999999864 7889999999999984
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.34 E-value=9.4e-13 Score=145.39 Aligned_cols=151 Identities=20% Similarity=0.244 Sum_probs=78.7
Q ss_pred cceeEEEeeccCccccccc-ccCCcccEEE-----ccCccCcccchhhhccCCCCcEEEcCCCCCCcCCcccCCCCCCcE
Q 007687 214 ENVRRISLMDNQITNLSEV-ATCRHLLTLF-----LNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISDLVSLQH 287 (593)
Q Consensus 214 ~~lr~L~l~~~~~~~l~~~-~~~~~Lr~L~-----l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~ 287 (593)
+++++|++.++.+...+.. .....|+.+. +..+.+. +++..+..+..|++|+|++|.+..+|..+..+.+|++
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR 251 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence 4567777776666554332 2222222222 2223333 3344467777777788877777777777777777778
Q ss_pred eeCCCCcCcccchhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccchhhhc
Q 007687 288 LDLSESDISELPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELL 367 (593)
Q Consensus 288 L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 367 (593)
|+|++|.++.+|..+++|++|++|+|++| .+..+|.. +++|++|++|++.+|... ..+..++
T Consensus 252 L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~----------------~lp~~~~ 313 (727)
T 4b8c_D 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAE-LGSCFQLKYFYFFDNMVT----------------TLPWEFG 313 (727)
T ss_dssp CBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSS-GGGGTTCSEEECCSSCCC----------------CCCSSTT
T ss_pred EEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChh-hcCCCCCCEEECCCCCCC----------------ccChhhh
Confidence 88877777777777777777888887777 46677776 777777777777776542 2344566
Q ss_pred CCCCCceEEEEecCcc
Q 007687 368 GLKYLEVISFTLRSSH 383 (593)
Q Consensus 368 ~l~~L~~L~i~~~~~~ 383 (593)
.+++|+.|+++.+...
T Consensus 314 ~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 314 NLCNLQFLGVEGNPLE 329 (727)
T ss_dssp SCTTCCCEECTTSCCC
T ss_pred cCCCccEEeCCCCccC
Confidence 7777777777766554
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.33 E-value=1.8e-12 Score=143.07 Aligned_cols=108 Identities=29% Similarity=0.327 Sum_probs=62.3
Q ss_pred ccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCcccCCCCCCcEeeCCCCcCcccchhhhccccCceee
Q 007687 233 ATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISDLVSLQHLDLSESDISELPGELKALVNLKCLN 312 (593)
Q Consensus 233 ~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~ 312 (593)
..++.|++|+|++|.+..++.. +..+++|++|+|++|.++.+|..|++|++|++|+|++|.++.+|..+++|++|++|+
T Consensus 221 ~~l~~L~~L~Ls~n~l~~l~~~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~ 299 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQIFNISAN-IFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFY 299 (727)
T ss_dssp -CCCCCCEEECTTSCCSCCCGG-GGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEE
T ss_pred ccCCCCcEEECCCCCCCCCChh-hcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEE
Confidence 4455566666666655555555 335556666666666555555555566666666666665555555555666666666
Q ss_pred ccccccccccchhhcCCCccCceeeccCCCC
Q 007687 313 LEWTRNLITIPRQLISNLSRLHVLRMFGASH 343 (593)
Q Consensus 313 l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 343 (593)
+++| .++.+|.+ ++++++|++|++.++..
T Consensus 300 L~~N-~l~~lp~~-~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 300 FFDN-MVTTLPWE-FGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp CCSS-CCCCCCSS-TTSCTTCCCEECTTSCC
T ss_pred CCCC-CCCccChh-hhcCCCccEEeCCCCcc
Confidence 6655 44555555 55566666666655544
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.32 E-value=7.2e-12 Score=114.64 Aligned_cols=123 Identities=27% Similarity=0.360 Sum_probs=107.7
Q ss_pred cEEEEcCCcceecCCCCCCcceeEEEeeccCcccccc---cccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCC
Q 007687 195 NFLVYAGVGLTEAPEVKGWENVRRISLMDNQITNLSE---VATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAE 271 (593)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~---~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~ 271 (593)
..+.+.+..++.+|.... .++++|++++|.+..++. +..+++|++|++++|.++.+++..|.++++|++|+|++|.
T Consensus 11 ~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCccCCC-CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 456777888888886332 499999999999999875 4789999999999999999977779999999999999999
Q ss_pred CCcCCc-ccCCCCCCcEeeCCCCcCccc-chhhhccccCceeecccccc
Q 007687 272 LTELPV-GISDLVSLQHLDLSESDISEL-PGELKALVNLKCLNLEWTRN 318 (593)
Q Consensus 272 l~~lp~-~i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~ 318 (593)
++.++. .++.+++|++|++++|.++.+ |..+..+++|++|++++|..
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 998854 599999999999999999966 67899999999999999953
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.30 E-value=1.1e-11 Score=111.73 Aligned_cols=125 Identities=23% Similarity=0.312 Sum_probs=107.8
Q ss_pred EEEEcCCcceecCCCCCCcceeEEEeeccCccccccc--ccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCC
Q 007687 196 FLVYAGVGLTEAPEVKGWENVRRISLMDNQITNLSEV--ATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELT 273 (593)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~ 273 (593)
.+.+.+..+..+|.. ..+++++|++++|.+..++.. ..+++|++|++++|.++.+++..|..+++|++|++++|.++
T Consensus 11 ~l~~~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 89 (177)
T 2o6r_A 11 EIRCNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ 89 (177)
T ss_dssp EEECCSSCCSSCCTT-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEEecCCCCccCCCC-CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcc
Confidence 466677777777743 337999999999999988763 78999999999999999999888899999999999999999
Q ss_pred cCCc-ccCCCCCCcEeeCCCCcCcccchh-hhccccCceeeccccccccc
Q 007687 274 ELPV-GISDLVSLQHLDLSESDISELPGE-LKALVNLKCLNLEWTRNLIT 321 (593)
Q Consensus 274 ~lp~-~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~ 321 (593)
.+|. .++.+++|++|++++|.++.+|.. +..+++|++|++++|.....
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 90 SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 8876 478999999999999999999876 47899999999999954333
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.28 E-value=9.2e-12 Score=133.23 Aligned_cols=152 Identities=22% Similarity=0.283 Sum_probs=118.0
Q ss_pred ccCCcccEEE-ccCccCcccchhh-----hcc--CCCCcEEEcCCCCCCcCCcccCCCCCCcEeeCCCCcCcccchhhhc
Q 007687 233 ATCRHLLTLF-LNQNKLQMIHNDF-----FRF--MPSLKVLNLSHAELTELPVGISDLVSLQHLDLSESDISELPGELKA 304 (593)
Q Consensus 233 ~~~~~Lr~L~-l~~~~l~~~~~~~-----~~~--l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~ 304 (593)
..+++|+.|+ ++.+.+..++... +.. ...|++|+|++|.++.+|. ++.+++|++|++++|.++.+|..+++
T Consensus 406 ~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~ 484 (567)
T 1dce_A 406 QYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAA 484 (567)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGG
T ss_pred HHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhc
Confidence 4677888888 5655443333211 111 2369999999999999997 99999999999999999999999999
Q ss_pred cccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccchhhhcCCCCCceEEEEecCccc
Q 007687 305 LVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELLGLKYLEVISFTLRSSHG 384 (593)
Q Consensus 305 L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~ 384 (593)
+++|++|++++| .++.+| . ++++++|++|+++++... ....+..++.+++|+.|+++.+....
T Consensus 485 l~~L~~L~Ls~N-~l~~lp-~-l~~l~~L~~L~Ls~N~l~--------------~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 485 LRCLEVLQASDN-ALENVD-G-VANLPRLQELLLCNNRLQ--------------QSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp CTTCCEEECCSS-CCCCCG-G-GTTCSSCCEEECCSSCCC--------------SSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred CCCCCEEECCCC-CCCCCc-c-cCCCCCCcEEECCCCCCC--------------CCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 999999999999 677898 4 999999999999998764 21126788999999999999988877
Q ss_pred hhhhhh-cccccccceEEE
Q 007687 385 LQSVLS-SHKLRCCTRALL 402 (593)
Q Consensus 385 ~~~~~~-~~~~~~~L~~L~ 402 (593)
.+.... .....++|+.|+
T Consensus 548 ~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 548 EEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SSSCTTHHHHHCTTCSEEE
T ss_pred CccHHHHHHHHCcccCccC
Confidence 654222 223345777764
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.25 E-value=2.9e-13 Score=124.76 Aligned_cols=125 Identities=20% Similarity=0.281 Sum_probs=93.6
Q ss_pred ceeEEEeecc--Cccccccc-ccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCcccCCCCCCcEeeCC
Q 007687 215 NVRRISLMDN--QITNLSEV-ATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISDLVSLQHLDLS 291 (593)
Q Consensus 215 ~lr~L~l~~~--~~~~l~~~-~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~ 291 (593)
.++...+.+. .++.++.. ..+++|++|++++|.++.+| . +..+++|++|++++|.++.+|..+..+++|++|+++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-S-LSGMENLRILSLGRNLIKKIENLDAVADTLEELWIS 101 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-C-HHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-c-cccCCCCCEEECCCCCcccccchhhcCCcCCEEECc
Confidence 4455555543 44455533 67888888888888888877 3 788888888888888888888777777888888888
Q ss_pred CCcCcccchhhhccccCceeeccccccccccch-hhcCCCccCceeeccCCCC
Q 007687 292 ESDISELPGELKALVNLKCLNLEWTRNLITIPR-QLISNLSRLHVLRMFGASH 343 (593)
Q Consensus 292 ~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~ 343 (593)
+|.++.+| .++.+++|++|++++| .+..+|. ..+..+++|++|++.++..
T Consensus 102 ~N~l~~l~-~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 102 YNQIASLS-GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp EEECCCHH-HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CCcCCcCC-ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 88888877 5788888888888888 5666554 2377888888888887754
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.23 E-value=2.1e-11 Score=109.45 Aligned_cols=99 Identities=20% Similarity=0.377 Sum_probs=55.6
Q ss_pred eEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCcc-cCCCCCCcEeeCCCCcC
Q 007687 217 RRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVG-ISDLVSLQHLDLSESDI 295 (593)
Q Consensus 217 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~i 295 (593)
+.++++++.+..+|... .++|++|++++|.++.+++..|.++++|++|+|++|.++.+|.. +.++++|++|+|++|.+
T Consensus 15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp SEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cEEEeCCCCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence 34555555555555432 25556666666665555554455566666666666666555443 35556666666666655
Q ss_pred cccchh-hhccccCceeecccc
Q 007687 296 SELPGE-LKALVNLKCLNLEWT 316 (593)
Q Consensus 296 ~~lp~~-i~~L~~L~~L~l~~~ 316 (593)
+.+|.. +..+++|++|++++|
T Consensus 94 ~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 94 KSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp CCCCTTTTTTCTTCSEEECCSS
T ss_pred ceeCHHHhccccCCCEEEeCCC
Confidence 555543 555556666666555
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.22 E-value=1.1e-12 Score=120.94 Aligned_cols=128 Identities=17% Similarity=0.192 Sum_probs=106.1
Q ss_pred cccEEEccCc--cCcccchhhhccCCCCcEEEcCCCCCCcCCcccCCCCCCcEeeCCCCcCcccchhhhccccCceeecc
Q 007687 237 HLLTLFLNQN--KLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISDLVSLQHLDLSESDISELPGELKALVNLKCLNLE 314 (593)
Q Consensus 237 ~Lr~L~l~~~--~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~ 314 (593)
.|+...+.+. .++.+|.. +..+++|++|++++|.++.+| .++.+++|++|++++|.++.+|..+..+++|++|+++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~-~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDAT-LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWIS 101 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHH-HHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEE
T ss_pred chheeEeccccCcHhhhhHH-HhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECc
Confidence 3455555544 35666665 899999999999999999999 9999999999999999999999988899999999999
Q ss_pred ccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccchhhhcCCCCCceEEEEecCcc
Q 007687 315 WTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELLGLKYLEVISFTLRSSH 383 (593)
Q Consensus 315 ~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~ 383 (593)
+| .+..+|. ++.+++|++|++.++... ....+..+..+++|+.|.++.+...
T Consensus 102 ~N-~l~~l~~--~~~l~~L~~L~l~~N~i~--------------~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 102 YN-QIASLSG--IEKLVNLRVLYMSNNKIT--------------NWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp EE-ECCCHHH--HHHHHHSSEEEESEEECC--------------CHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CC-cCCcCCc--cccCCCCCEEECCCCcCC--------------chhHHHHHhcCCCCCEEEecCCccc
Confidence 99 6788884 899999999999988764 2233457888999999999866543
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.20 E-value=5.2e-11 Score=106.89 Aligned_cols=103 Identities=22% Similarity=0.346 Sum_probs=92.4
Q ss_pred ccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcC-CcccCCCCCCcEeeCCCCcCcccchh-hhccccCceeeccc
Q 007687 238 LLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTEL-PVGISDLVSLQHLDLSESDISELPGE-LKALVNLKCLNLEW 315 (593)
Q Consensus 238 Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~ 315 (593)
-+.++++++.++.+|.. + .++|++|+|++|.++.+ |..++++++|++|+|++|+++.+|.. +.++++|++|++++
T Consensus 14 ~~~l~~~~n~l~~iP~~-~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAG-I--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCSC-C--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCCC-c--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 37899999999999986 3 38999999999999988 66899999999999999999999976 58999999999999
Q ss_pred cccccccchhhcCCCccCceeeccCCCCC
Q 007687 316 TRNLITIPRQLISNLSRLHVLRMFGASHN 344 (593)
Q Consensus 316 ~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 344 (593)
| .+..+|.+.++.+++|++|++.++...
T Consensus 91 N-~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 N-HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp S-CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred C-ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 9 788898877899999999999988764
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.19 E-value=5.4e-11 Score=106.37 Aligned_cols=101 Identities=26% Similarity=0.373 Sum_probs=56.2
Q ss_pred cEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcC-CcccCCCCCCcEeeCCCCcCcccchh-hhccccCceeecccc
Q 007687 239 LTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTEL-PVGISDLVSLQHLDLSESDISELPGE-LKALVNLKCLNLEWT 316 (593)
Q Consensus 239 r~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~ 316 (593)
++++++++.++.+|..+ .++|++|+|++|.++.+ |..++.+++|++|+|++|.++.+|.. +..+++|++|++++|
T Consensus 12 ~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 45555555555555431 25555666666655555 34455566666666666665555543 355566666666665
Q ss_pred ccccccchhhcCCCccCceeeccCCCC
Q 007687 317 RNLITIPRQLISNLSRLHVLRMFGASH 343 (593)
Q Consensus 317 ~~l~~lp~~~i~~l~~L~~L~l~~~~~ 343 (593)
.+..+|.+.+..+++|++|++.++..
T Consensus 89 -~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 89 -QLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred -ccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 45555554455566666666655543
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.16 E-value=8.7e-11 Score=105.03 Aligned_cols=101 Identities=20% Similarity=0.339 Sum_probs=87.4
Q ss_pred eeEEEeeccCcccccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCcc-cCCCCCCcEeeCCCCc
Q 007687 216 VRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVG-ISDLVSLQHLDLSESD 294 (593)
Q Consensus 216 lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~ 294 (593)
.++++++++.+..+|... .++|++|++++|.++.+++..|.++++|++|+|++|.++.+|.. +..+++|++|+|++|.
T Consensus 11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 467888888888887643 38899999999999999877789999999999999999988764 6899999999999999
Q ss_pred Ccccchh-hhccccCceeeccccc
Q 007687 295 ISELPGE-LKALVNLKCLNLEWTR 317 (593)
Q Consensus 295 i~~lp~~-i~~L~~L~~L~l~~~~ 317 (593)
++.+|.. +..+++|++|++++|.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCC
Confidence 9988864 8889999999999984
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.16 E-value=2.6e-10 Score=113.83 Aligned_cols=283 Identities=12% Similarity=0.076 Sum_probs=143.4
Q ss_pred CcceeEEEeeccCc-cccccccc-CCcccEEEccCccCc--ccchhhhccCCCCcEEEcCCCCCCcCCc-ccCC------
Q 007687 213 WENVRRISLMDNQI-TNLSEVAT-CRHLLTLFLNQNKLQ--MIHNDFFRFMPSLKVLNLSHAELTELPV-GISD------ 281 (593)
Q Consensus 213 ~~~lr~L~l~~~~~-~~l~~~~~-~~~Lr~L~l~~~~l~--~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~------ 281 (593)
+.+++.|.+.++-- ..+..... +++|++|+|++|.+. ..... .++.++.+.+..+ .+|. .|.+
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~---~I~~~aF~~~~~~~~ 97 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMAN---FVPAYAFSNVVNGVT 97 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTT---EECTTTTEEEETTEE
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCccc---ccccccccccccc---ccCHHHhcccccccc
Confidence 35677777776411 11222222 777888888888776 22222 1222444444444 2322 3445
Q ss_pred --CCCCcEeeCCCCcCcccch-hhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCC
Q 007687 282 --LVSLQHLDLSESDISELPG-ELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGG 358 (593)
Q Consensus 282 --L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 358 (593)
+.+|+.|+|.+ .++.+++ .+..+++|+.|++.++ .+..++..++..+.++..+......... +.
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~~~~~~~--~~--------- 164 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKK-TAPNLLPEALADSVTAIFIPLGSSDAYR--FK--------- 164 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCS-SCCEECTTSSCTTTCEEEECTTCTHHHH--TS---------
T ss_pred cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCC-CccccchhhhcCCCceEEecCcchhhhh--cc---------
Confidence 67777777777 6666663 3666777777777766 4556666666666666665544311100 00
Q ss_pred cccchhhhcCCCCCc-eEEEEecCccchhhhhh-cccccccceEEEecccCCCceeeeccc-cccccccceeeccccccc
Q 007687 359 GALIVEELLGLKYLE-VISFTLRSSHGLQSVLS-SHKLRCCTRALLLQCFNDSTSLEVSAL-ADLKQLNRLRIAECKKLE 435 (593)
Q Consensus 359 ~~~~~~~L~~l~~L~-~L~i~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~ 435 (593)
.......+.....|+ .+.+. ....++.... ......++..+.+.+.- .......+ ..+++|+.|++.++. ++
T Consensus 165 ~~i~~~~f~~~~~L~~~i~~~--~~~~l~~~~~~~~~~~~~~~~l~~~~~l--~~~~~~~l~~~~~~L~~l~L~~n~-i~ 239 (329)
T 3sb4_A 165 NRWEHFAFIEGEPLETTIQVG--AMGKLEDEIMKAGLQPRDINFLTIEGKL--DNADFKLIRDYMPNLVSLDISKTN-AT 239 (329)
T ss_dssp TTTTTSCEEESCCCEEEEEEC--TTCCHHHHHHHTTCCGGGCSEEEEEECC--CHHHHHHHHHHCTTCCEEECTTBC-CC
T ss_pred ccccccccccccccceeEEec--CCCcHHHHHhhcccCccccceEEEeeee--cHHHHHHHHHhcCCCeEEECCCCC-cc
Confidence 000000111222333 22221 1122222111 11112344444444321 11111111 125677788877654 44
Q ss_pred eeeeccCCcccccCCCCccEEEEeCCCCCCCCcc--cccCCCCC-EEeeccCccchhhcccCcccccccccCCCCCCccc
Q 007687 436 ELKMDYTGEVQQFVFHSLKKVEIVNSYKLKDLTF--LVFAPNLE-SIEVLGCVAMEEMVSVGKFAAVPEVTANLNPFAKL 512 (593)
Q Consensus 436 ~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--l~~l~~L~-~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L 512 (593)
.++...+. .+.+|+.|++.+. ++.++. +..+++|+ .+.+.+ .++.+.. ..+.++++|
T Consensus 240 ~I~~~aF~-----~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~-----------~aF~~c~~L 299 (329)
T 3sb4_A 240 TIPDFTFA-----QKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEF-----------GAFMGCDNL 299 (329)
T ss_dssp EECTTTTT-----TCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECT-----------TTTTTCTTE
T ss_pred eecHhhhh-----CCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEch-----------hhhhCCccC
Confidence 45444443 2677888877764 555543 66777888 888876 4444432 155677888
Q ss_pred ceecccccccCcccCCCCC-CCCccceee
Q 007687 513 QYLDLVGAINLKSIYWMPL-SFPLLKYLR 540 (593)
Q Consensus 513 ~~L~l~~c~~L~~l~~~~~-~~~~L~~L~ 540 (593)
+.|.+.. ..++.++.... .+++|+.++
T Consensus 300 ~~l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 300 RYVLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred CEEEeCC-CccCccchhhhcCCcchhhhc
Confidence 8888765 46777765432 356666654
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.07 E-value=5.3e-10 Score=111.55 Aligned_cols=285 Identities=14% Similarity=0.096 Sum_probs=163.8
Q ss_pred cCCcccEEEccCccCcccchhhhcc-CCCCcEEEcCCCCCCcCCcccCCCCCCcEeeCCCCcCcccc-hhhhc-------
Q 007687 234 TCRHLLTLFLNQNKLQMIHNDFFRF-MPSLKVLNLSHAELTELPVGISDLVSLQHLDLSESDISELP-GELKA------- 304 (593)
Q Consensus 234 ~~~~Lr~L~l~~~~l~~~~~~~~~~-l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp-~~i~~------- 304 (593)
.+.+++.|.+.++ +....-..+.. +++|++|||++|.+......-+.++.++++.+..+ .+| ..+.+
T Consensus 23 ~~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~ 98 (329)
T 3sb4_A 23 EANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTK 98 (329)
T ss_dssp HHHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEE
T ss_pred hhCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhccccccccc
Confidence 4667888888875 22222222444 88999999999988832222233333555555555 344 33556
Q ss_pred -cccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccchhhhcCCCCCceEEEEecCc-
Q 007687 305 -LVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELLGLKYLEVISFTLRSS- 382 (593)
Q Consensus 305 -L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~- 382 (593)
+++|+.|++.+ .++.++.+++.++++|++|++..+....+ ....+....++..+.......
T Consensus 99 g~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i---------------~~~aF~~~~~l~~l~~~~~~~~ 161 (329)
T 3sb4_A 99 GKQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNL---------------LPEALADSVTAIFIPLGSSDAY 161 (329)
T ss_dssp ECTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEE---------------CTTSSCTTTCEEEECTTCTHHH
T ss_pred ccCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCcccc---------------chhhhcCCCceEEecCcchhhh
Confidence 99999999998 58889998899999999999998765311 111122222332222111000
Q ss_pred cchhhhhhc-ccccccce-EEEecccCCCceeeeccccccccccceeeccccccceeeeccCCcccccCCCCccEEEEeC
Q 007687 383 HGLQSVLSS-HKLRCCTR-ALLLQCFNDSTSLEVSALADLKQLNRLRIAECKKLEELKMDYTGEVQQFVFHSLKKVEIVN 460 (593)
Q Consensus 383 ~~~~~~~~~-~~~~~~L~-~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~l~~L~~L~l~~ 460 (593)
.....+... ......|+ .+.+.............-....++..+.+.+.-... ...... ..+++|+.|++.+
T Consensus 162 ~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~--~~~~l~----~~~~~L~~l~L~~ 235 (329)
T 3sb4_A 162 RFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNA--DFKLIR----DYMPNLVSLDISK 235 (329)
T ss_dssp HTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHH--HHHHHH----HHCTTCCEEECTT
T ss_pred hccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHH--HHHHHH----HhcCCCeEEECCC
Confidence 000000000 00111233 333332221111110111124566667666542211 111100 1268999999998
Q ss_pred CCCCCCCcc--cccCCCCCEEeeccCccchhhcccCcccccccccCCCCCCcccc-eecccccccCcccCCCC-CCCCcc
Q 007687 461 SYKLKDLTF--LVFAPNLESIEVLGCVAMEEMVSVGKFAAVPEVTANLNPFAKLQ-YLDLVGAINLKSIYWMP-LSFPLL 536 (593)
Q Consensus 461 c~~l~~l~~--l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~c~~L~~l~~~~-~~~~~L 536 (593)
+ .++.++. +..+++|++|++.++ ++.+.. ..+.++++|+ .+.+.+ .++.+.... ..+++|
T Consensus 236 n-~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~-----------~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L 299 (329)
T 3sb4_A 236 T-NATTIPDFTFAQKKYLLKIKLPHN--LKTIGQ-----------RVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNL 299 (329)
T ss_dssp B-CCCEECTTTTTTCTTCCEEECCTT--CCEECT-----------TTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTE
T ss_pred C-CcceecHhhhhCCCCCCEEECCcc--cceehH-----------HHhhCChhccEEEEEcc--cceEEchhhhhCCccC
Confidence 7 5777764 788999999999886 555543 2567889999 999987 788887543 358999
Q ss_pred ceeeeccCcCCCCCCCC-CCcc-cccce
Q 007687 537 KYLRAMNCHKLKKLPFD-SNSA-RERNI 562 (593)
Q Consensus 537 ~~L~i~~C~~L~~lP~~-~~~~-~l~~l 562 (593)
+.+.+.+ .+++.++.. +... +|+.+
T Consensus 300 ~~l~l~~-n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 300 RYVLATG-DKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp EEEEECS-SCCCEECTTTTCTTCCCCEE
T ss_pred CEEEeCC-CccCccchhhhcCCcchhhh
Confidence 9999854 367777763 4443 55544
No 142
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.94 E-value=4.2e-10 Score=132.91 Aligned_cols=140 Identities=14% Similarity=0.054 Sum_probs=108.2
Q ss_pred hhhhhhhhhccccchhhchHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhc--cchhhhhhhHHHHHHHHHHHHH----
Q 007687 15 IFNRCLDCFLGKAAYIRNLQENVIALETELVKLIEAKNDVMARV---VNAER--QPMMTRLNKVQGWLSRVDAVKA---- 85 (593)
Q Consensus 15 ~~~~~~~~f~~~a~~~~~~~~~~~~l~~~~~~L~~~~~~i~~k~---~~a~~--~~~l~~~~~~~~W~~~l~~l~~---- 85 (593)
..+++|++|..+++.... ++.+..++|+++| |+|.. |+.++.+. ..|...++.+..
T Consensus 287 ~~~~a~~l~~~~~~~~~~-------------~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~~ 351 (1249)
T 3sfz_A 287 GREKGLEILSLFVNMKKE-------------DLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQFK 351 (1249)
T ss_dssp CHHHHHHHHHHHHTSCST-------------TCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCCC
T ss_pred CHHHHHHHHHHhhCCChh-------------hCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhhh
Confidence 358899999887743211 1223478899999 88876 54665544 478888876642
Q ss_pred --------------HHHHHHhhChHHHHHhHhccccCCcccchhhhhHHHHHHhHHHHHHHHHhcCCCCCchhhhHHHhH
Q 007687 86 --------------EADELIRHGSQEIEKLCLGGYCSKNCHSSYKLGKQVAKKLRDKLIDCWIGEGFLTERDRFVEQNQG 151 (593)
Q Consensus 86 --------------~~~~i~~~~l~~~lk~Cf~~yc~s~fp~~~~i~~~~~~~~~~~Li~~WiaeGfi~~~~~~~~e~~~ 151 (593)
.++++....||++.|.|| +|| |+||+++.|++ +.++.+|.++ ++.+
T Consensus 352 ~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~-~~l-~~f~~~~~i~~-------~~~~~~~~~~-----------~~~~ 411 (1249)
T 3sfz_A 352 RIRKSSSYDYEALDEAMSISVEMLREDIKDYY-TDL-SILQKDVKVPT-------KVLCVLWDLE-----------TEEV 411 (1249)
T ss_dssp CSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHH-HHG-GGSCTTCCEEH-------HHHHHHHTCC-----------HHHH
T ss_pred hcccccccchHHHHHHHHHHHHhCCHHHHHHH-HHh-CccCCCCeeCH-------HHHHHHhCCC-----------HHHH
Confidence 234555668999999999 999 99999999999 9999999765 3667
Q ss_pred HHHHHHHHHhccccccCCC---ceeehhHHHHHHHHHHhhc
Q 007687 152 YHILGILLHACLLEEGGDG---KVKMHDVIRDMALWIVCDI 189 (593)
Q Consensus 152 ~~~~~~L~~~~ll~~~~~~---~~~mhdli~dl~~~i~~~~ 189 (593)
+.++++|+++||++....+ .|+|||++|++++..+.++
T Consensus 412 ~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 412 EDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 8899999999999987333 5999999999999886653
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.92 E-value=7.1e-08 Score=98.44 Aligned_cols=98 Identities=21% Similarity=0.242 Sum_probs=45.4
Q ss_pred cccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCC-cccCCCCCCcEeeCCCCcCcccchhhhccccCceeeccc
Q 007687 237 HLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELP-VGISDLVSLQHLDLSESDISELPGELKALVNLKCLNLEW 315 (593)
Q Consensus 237 ~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~ 315 (593)
+|+.+.+..+ ++.++...|.++ +|+.+.+.. .++.++ ..|.++.+|+.+++.+++++.+|...-...+|+.+.+..
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~ 212 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV 212 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC
Confidence 3444544433 444444444443 355555543 344442 244555555555555555555543332334555555543
Q ss_pred cccccccchhhcCCCccCceeecc
Q 007687 316 TRNLITIPRQLISNLSRLHVLRMF 339 (593)
Q Consensus 316 ~~~l~~lp~~~i~~l~~L~~L~l~ 339 (593)
+ +..++..++.++++|+.+.+.
T Consensus 213 ~--l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 213 T--LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp T--CCEECTTTTTTCTTCCCEECC
T ss_pred c--hheehhhHhhCCCCCCEEecC
Confidence 2 444444444455555554443
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.88 E-value=8.3e-08 Score=97.96 Aligned_cols=215 Identities=14% Similarity=0.253 Sum_probs=141.4
Q ss_pred ceeEEEeeccCccccccc--ccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCcccCCCCCCcEeeCCC
Q 007687 215 NVRRISLMDNQITNLSEV--ATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPVGISDLVSLQHLDLSE 292 (593)
Q Consensus 215 ~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~ 292 (593)
+++.+.+..+ ++.++.. .. .+|+.+.+.. .++.++...|.+|.+|+.+++.++.++.+|...-...+|+.+.+..
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~ 212 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV 212 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT
T ss_pred CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC
Confidence 6788887654 6666654 44 4799999986 6888998889999999999999999999977544468999999985
Q ss_pred CcCcccc-hhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCCCCCCCCccccccCCcccchhhhcCCCC
Q 007687 293 SDISELP-GELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHNAFDGASEDSILFGGGALIVEELLGLKY 371 (593)
Q Consensus 293 ~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~ 371 (593)
+ ++.++ ..+.++++|+.+++..+ +..++..++.+ .+|+.+.+...- ..-....+..+++
T Consensus 213 ~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~i----------------~~I~~~aF~~c~~ 272 (401)
T 4fdw_A 213 T-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPNGV----------------TNIASRAFYYCPE 272 (401)
T ss_dssp T-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEETTC----------------CEECTTTTTTCTT
T ss_pred c-hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCCCc----------------cEEChhHhhCCCC
Confidence 4 77777 45788999999999875 78888887877 789999885321 1112334566777
Q ss_pred CceEEEEecCccchhhhhhcccccccceEEEecccCCCceeeeccccccccccceeeccccccceeeeccCCcccccCCC
Q 007687 372 LEVISFTLRSSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRLRIAECKKLEELKMDYTGEVQQFVFH 451 (593)
Q Consensus 372 L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~l~ 451 (593)
|+.+.+....... .....+...++..+++|+.+.+.+ .++.+....+. .+.
T Consensus 273 L~~l~l~~~~~~~----------------------~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~-----~c~ 323 (401)
T 4fdw_A 273 LAEVTTYGSTFND----------------------DPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLG-----GNR 323 (401)
T ss_dssp CCEEEEESSCCCC----------------------CTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTT-----TCC
T ss_pred CCEEEeCCccccC----------------------CcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhc-----CCC
Confidence 7777776432210 001122223455566666666653 24444333333 255
Q ss_pred CccEEEEeCCCCCCCCcc--cccCCCCCEEeeccC
Q 007687 452 SLKKVEIVNSYKLKDLTF--LVFAPNLESIEVLGC 484 (593)
Q Consensus 452 ~L~~L~l~~c~~l~~l~~--l~~l~~L~~L~l~~c 484 (593)
+|+.+.|.+. ++.+.. +..+ +|+.+.+.++
T Consensus 324 ~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 324 KVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp SCCEEEECTT--CCEECTTSSSSS-CCCEEEECCS
T ss_pred CccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCC
Confidence 6666666432 333322 4445 6666666655
No 145
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=98.87 E-value=3.8e-10 Score=123.92 Aligned_cols=133 Identities=8% Similarity=0.025 Sum_probs=96.8
Q ss_pred hhhhhhhhhccccchhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cchhhhh-hhHHHHHHHHHHHHHHHHHHH
Q 007687 15 IFNRCLDCFLGKAAYIRNLQENVIALETELVKLIEAKNDVMARVVNAER--QPMMTRL-NKVQGWLSRVDAVKAEADELI 91 (593)
Q Consensus 15 ~~~~~~~~f~~~a~~~~~~~~~~~~l~~~~~~L~~~~~~i~~k~~~a~~--~~~l~~~-~~~~~W~~~l~~l~~~~~~i~ 91 (593)
..+++|++|++++.. . .. +...+|.+.+|+|.+ |+.++.+ .+.++|...-..--..+.++.
T Consensus 299 S~eEA~eLF~~~~g~--~-~e-------------eL~~eICgGLPLALkLaGs~Lr~k~~s~eeW~~~~~~~I~aaLelS 362 (1221)
T 1vt4_I 299 TPDEVKSLLLKYLDC--R-PQ-------------DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362 (1221)
T ss_dssp CHHHHHHHHHHHHCC--C-TT-------------THHHHHCCCCHHHHHHHHHHHHHSCSSHHHHHHCSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCC--C-HH-------------HHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHhcCChhHHHHHHHHH
Confidence 358999999887321 1 01 112233334488875 5466655 267899764211112344555
Q ss_pred hhChHHHH-HhHhccccCCcccchhhhhHHHHHHhHHHHHHHHHhcCCCCCchhhhHHHhHHHHHHHHHHhcccccc-CC
Q 007687 92 RHGSQEIE-KLCLGGYCSKNCHSSYKLGKQVAKKLRDKLIDCWIGEGFLTERDRFVEQNQGYHILGILLHACLLEEG-GD 169 (593)
Q Consensus 92 ~~~l~~~l-k~Cf~~yc~s~fp~~~~i~~~~~~~~~~~Li~~WiaeGfi~~~~~~~~e~~~~~~~~~L~~~~ll~~~-~~ 169 (593)
...||++. |+|| +|| |+||+++.|++ +.++.+|+++| ++.+..++++|+++||++.. ..
T Consensus 363 Yd~Lp~eelK~cF-L~L-AIFPed~~I~~-------elLa~LW~aeG----------eedAe~~L~eLvdRSLLq~d~~~ 423 (1221)
T 1vt4_I 363 LNVLEPAEYRKMF-DRL-SVFPPSAHIPT-------ILLSLIWFDVI----------KSDVMVVVNKLHKYSLVEKQPKE 423 (1221)
T ss_dssp HHHSCTTHHHHHH-HHT-TSSCTTSCEEH-------HHHHHHHCSSC----------SHHHHHHHHHHHTSSSSSBCSSS
T ss_pred HHhCCHHHHHHHH-HHH-hCCCCCCCCCH-------HHHHHHhcCCC----------HHHHHHHHHHHHhhCCEEEeCCC
Confidence 66888999 9999 999 99999999999 89999999998 13478899999999999986 46
Q ss_pred CceeehhHHHHHH
Q 007687 170 GKVKMHDVIRDMA 182 (593)
Q Consensus 170 ~~~~mhdli~dl~ 182 (593)
..|+|||++++++
T Consensus 424 ~rYrMHDLllELr 436 (1221)
T 1vt4_I 424 STISIPSIYLELK 436 (1221)
T ss_dssp SEEBCCCHHHHHH
T ss_pred CEEEehHHHHHHh
Confidence 7899999999865
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.86 E-value=4.1e-09 Score=105.93 Aligned_cols=97 Identities=18% Similarity=0.189 Sum_probs=49.6
Q ss_pred Eeecc-CcccccccccCCcccEEEccC-ccCcccchhhhccCCCCcEEEcCCCCCCcCC-cccCCCCCCcEeeCCCCcCc
Q 007687 220 SLMDN-QITNLSEVATCRHLLTLFLNQ-NKLQMIHNDFFRFMPSLKVLNLSHAELTELP-VGISDLVSLQHLDLSESDIS 296 (593)
Q Consensus 220 ~l~~~-~~~~l~~~~~~~~Lr~L~l~~-~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~ 296 (593)
+.+++ .+..+|.+..+++|+.|+|++ |.++.+++..|.++++|++|+|++|.++.+| ..|++|++|++|+|++|.++
T Consensus 14 ~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 93 (347)
T 2ifg_A 14 RCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE 93 (347)
T ss_dssp ECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS
T ss_pred EcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc
Confidence 44444 455554444445555555553 5555555444555555555555555555442 24455555555555555555
Q ss_pred ccchhhhccccCceeecccc
Q 007687 297 ELPGELKALVNLKCLNLEWT 316 (593)
Q Consensus 297 ~lp~~i~~L~~L~~L~l~~~ 316 (593)
.+|..+.....|+.|++.+|
T Consensus 94 ~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 94 SLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp CCCSTTTCSCCCCEEECCSS
T ss_pred eeCHHHcccCCceEEEeeCC
Confidence 55543333223555555555
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.85 E-value=5.9e-09 Score=104.81 Aligned_cols=102 Identities=21% Similarity=0.276 Sum_probs=89.4
Q ss_pred cEEEccCc-cCcccchhhhccCCCCcEEEcCC-CCCCcCC-cccCCCCCCcEeeCCCCcCcccch-hhhccccCceeecc
Q 007687 239 LTLFLNQN-KLQMIHNDFFRFMPSLKVLNLSH-AELTELP-VGISDLVSLQHLDLSESDISELPG-ELKALVNLKCLNLE 314 (593)
Q Consensus 239 r~L~l~~~-~l~~~~~~~~~~l~~Lr~L~L~~-~~l~~lp-~~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~ 314 (593)
..++.+++ .++.+|. +..+.+|++|+|++ |.++.+| ..|+.|.+|++|+|++|.++.+|. .+.+|++|++|+|+
T Consensus 11 ~~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 34688888 8999998 89999999999996 9999887 579999999999999999998875 67999999999999
Q ss_pred ccccccccchhhcCCCccCceeeccCCCCC
Q 007687 315 WTRNLITIPRQLISNLSRLHVLRMFGASHN 344 (593)
Q Consensus 315 ~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 344 (593)
+| .+..+|.+++..++ |++|++.++...
T Consensus 89 ~N-~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FN-ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SS-CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CC-ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 99 78889987566666 999999988764
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.58 E-value=2.1e-08 Score=101.41 Aligned_cols=128 Identities=20% Similarity=0.238 Sum_probs=69.4
Q ss_pred cceeEEEeeccCccc--cccc-ccCCcccEEEccCccCcccchhhh-----ccCCCCcEEEcCCCCCCc-----CCcccC
Q 007687 214 ENVRRISLMDNQITN--LSEV-ATCRHLLTLFLNQNKLQMIHNDFF-----RFMPSLKVLNLSHAELTE-----LPVGIS 280 (593)
Q Consensus 214 ~~lr~L~l~~~~~~~--l~~~-~~~~~Lr~L~l~~~~l~~~~~~~~-----~~l~~Lr~L~L~~~~l~~-----lp~~i~ 280 (593)
++++.|++++|.+.. +... ..+++|+.|++++|.++......+ ...+.|++|+|++|.++. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 466666666666543 1112 334566666666666554332222 234566666666666542 344445
Q ss_pred CCCCCcEeeCCCCcCcc-----cchhhhccccCceeeccccccccc-----cchhhcCCCccCceeeccCCCC
Q 007687 281 DLVSLQHLDLSESDISE-----LPGELKALVNLKCLNLEWTRNLIT-----IPRQLISNLSRLHVLRMFGASH 343 (593)
Q Consensus 281 ~L~~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L~l~~~~~l~~-----lp~~~i~~l~~L~~L~l~~~~~ 343 (593)
.+++|++|+|++|.++. ++..+...++|++|++++| .++. ++.. +...++|++|++.+|..
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~-L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALALARA-AREHPSLELLHLYFNEL 251 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHH-HHHCSSCCEEECTTSSC
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHH-HHhCCCCCEEeccCCCC
Confidence 56666666666666552 3444555566666666666 3332 2221 34456666666666654
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.53 E-value=3.2e-06 Score=86.23 Aligned_cols=38 Identities=16% Similarity=0.237 Sum_probs=25.0
Q ss_pred hhhccccCceeeccccccccccchhhcCCCccCceeeccC
Q 007687 301 ELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFG 340 (593)
Q Consensus 301 ~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~ 340 (593)
.+..+++|+.+.+.++ +..++.+++.++++|+.+.+..
T Consensus 157 aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~ 194 (394)
T 4fs7_A 157 AFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPR 194 (394)
T ss_dssp TTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCT
T ss_pred hhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCC
Confidence 3556677777777654 4556666677777777776653
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.52 E-value=2.4e-08 Score=100.94 Aligned_cols=128 Identities=18% Similarity=0.169 Sum_probs=74.6
Q ss_pred cceeEEEeeccCcccccc-----c--ccCCcccEEEccCccCcccc-hhhhccCCCCcEEEcCCCCCCcC-----Cccc-
Q 007687 214 ENVRRISLMDNQITNLSE-----V--ATCRHLLTLFLNQNKLQMIH-NDFFRFMPSLKVLNLSHAELTEL-----PVGI- 279 (593)
Q Consensus 214 ~~lr~L~l~~~~~~~l~~-----~--~~~~~Lr~L~l~~~~l~~~~-~~~~~~l~~Lr~L~L~~~~l~~l-----p~~i- 279 (593)
+.++.|++++|.+..... . ...++|+.|++++|.++... ..+...+++|++|+|++|.++.. ...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 467777777777654221 1 23367777777777765322 12233455677777777766532 1122
Q ss_pred CCCCCCcEeeCCCCcCcc-----cchhhhccccCceeeccccccccc-----cchhhcCCCccCceeeccCCCC
Q 007687 280 SDLVSLQHLDLSESDISE-----LPGELKALVNLKCLNLEWTRNLIT-----IPRQLISNLSRLHVLRMFGASH 343 (593)
Q Consensus 280 ~~L~~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L~l~~~~~l~~-----lp~~~i~~l~~L~~L~l~~~~~ 343 (593)
....+|++|+|++|.++. ++..+...++|++|++++|. ++. ++.. +...++|++|++.+|..
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~-L~~~~~L~~L~Ls~N~i 223 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQ-LDRNRQLQELNVAYNGA 223 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHH-GGGCSCCCEEECCSSCC
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHH-HhcCCCcCeEECCCCCC
Confidence 245667777777776653 44455666777777777773 332 2232 45566677777766654
No 151
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.50 E-value=1e-07 Score=103.03 Aligned_cols=138 Identities=13% Similarity=0.038 Sum_probs=101.3
Q ss_pred hhhhhhhhhhccccchhhchHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhc--cchhhhhhhHHHHHHHHHHHHH---
Q 007687 14 AIFNRCLDCFLGKAAYIRNLQENVIALETELVKLIEAKNDVMARV---VNAER--QPMMTRLNKVQGWLSRVDAVKA--- 85 (593)
Q Consensus 14 ~~~~~~~~~f~~~a~~~~~~~~~~~~l~~~~~~L~~~~~~i~~k~---~~a~~--~~~l~~~~~~~~W~~~l~~l~~--- 85 (593)
...+++|++|.+.++... .. +.+..++|+++| |+|.. ++.++.+ ..+|..+++.+.+
T Consensus 286 L~~~ea~~L~~~~~~~~~--~~-----------~~~~~~~i~~~~~G~PLal~~~a~~l~~~--~~~w~~~l~~l~~~~~ 350 (591)
T 1z6t_A 286 LGKEKGLEILSLFVNMKK--AD-----------LPEQAHSIIKECKGSPLVVSLIGALLRDF--PNRWEYYLKQLQNKQF 350 (591)
T ss_dssp CCHHHHHHHHHHHHTSCG--GG-----------SCTHHHHHHHHHTTCHHHHHHHHHHHHHS--TTCHHHHHHHHHSCCC
T ss_pred CCHHHHHHHHHHHhCCCc--cc-----------ccHHHHHHHHHhCCCcHHHHHHHHHHhcC--chhHHHHHHHHHHhHH
Confidence 335889999988875311 11 112367889999 77765 4345444 3479888776642
Q ss_pred ------------H---HHHHHhhChHHHHHhHhccccCCcccchhhhhHHHHHHhHHHHHHHHHhcCCCCCchhhhHHHh
Q 007687 86 ------------E---ADELIRHGSQEIEKLCLGGYCSKNCHSSYKLGKQVAKKLRDKLIDCWIGEGFLTERDRFVEQNQ 150 (593)
Q Consensus 86 ------------~---~~~i~~~~l~~~lk~Cf~~yc~s~fp~~~~i~~~~~~~~~~~Li~~WiaeGfi~~~~~~~~e~~ 150 (593)
. +.+...+.||++.|.|| .|| |+||+++.|+. +.++.+|.++ .+.
T Consensus 351 ~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l-~~l-a~f~~~~~i~~-------~~l~~l~~~~-----------~~~ 410 (591)
T 1z6t_A 351 KRIRKSSSYDYEALDEAMSISVEMLREDIKDYY-TDL-SILQKDVKVPT-------KVLCILWDME-----------TEE 410 (591)
T ss_dssp CCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHH-HHG-GGCCTTCCEEH-------HHHHHHHTCC-----------HHH
T ss_pred HHhhhccccchHHHHHHHHHHHHhCCHHHHHHH-HHc-cccCCCCccCH-------HHHHHHhccC-----------HHH
Confidence 2 33444568999999999 999 99999999999 8899999654 234
Q ss_pred HHHHHHHHHHhcccccc---CCCceeehhHHHHHHHHHH
Q 007687 151 GYHILGILLHACLLEEG---GDGKVKMHDVIRDMALWIV 186 (593)
Q Consensus 151 ~~~~~~~L~~~~ll~~~---~~~~~~mhdli~dl~~~i~ 186 (593)
+..++++|+++||++.. ....|+||++++++++...
T Consensus 411 ~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 411 VEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 67889999999999865 2347999999999998773
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.20 E-value=3e-05 Score=78.96 Aligned_cols=280 Identities=17% Similarity=0.135 Sum_probs=161.9
Q ss_pred CCCCCcceeEEEeeccCccccccc--ccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCC------------CC--
Q 007687 209 EVKGWENVRRISLMDNQITNLSEV--ATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHA------------EL-- 272 (593)
Q Consensus 209 ~~~~~~~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~------------~l-- 272 (593)
.+.++.+|+.+.+. +.++.+... ..|.+|+.+.+..+ ++.++...|.++..|+.+.+..+ .+
T Consensus 66 AF~~c~~L~~i~lp-~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~ 143 (394)
T 4fs7_A 66 AFQGCRKVTEIKIP-STVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKE 143 (394)
T ss_dssp TTTTCTTEEEEECC-TTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSE
T ss_pred HhhCCCCceEEEeC-CCccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccc
Confidence 46677899999996 447777654 78999999999755 77888888888888887766432 11
Q ss_pred -------CcC-CcccCCCCCCcEeeCCCCcCcccc-hhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCC
Q 007687 273 -------TEL-PVGISDLVSLQHLDLSESDISELP-GELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASH 343 (593)
Q Consensus 273 -------~~l-p~~i~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 343 (593)
..+ ...|.++.+|+.+.+..+ +..++ ..+..+.+|+.+.+..+ ++.++..++.+++.|+.+.+.....
T Consensus 144 ~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~~ 220 (394)
T 4fs7_A 144 ITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSLY 220 (394)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTCC
T ss_pred cccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCCce
Confidence 111 235778899999999765 45555 45778899999999875 7778887788999999887765432
Q ss_pred CCCCCCCccccccCCcccchhhhcCCCCCceEEEEecCccchhhhhhcccccccceEEEecccCCCceeeeccccccccc
Q 007687 344 NAFDGASEDSILFGGGALIVEELLGLKYLEVISFTLRSSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLKQL 423 (593)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L 423 (593)
. .-.......+|+.+.+... ...+.. ........++.+.+... ...+....+..+..+
T Consensus 221 ~-----------------i~~~~~~~~~l~~i~ip~~-~~~i~~--~~f~~~~~l~~~~~~~~--~~~i~~~~F~~~~~l 278 (394)
T 4fs7_A 221 Y-----------------LGDFALSKTGVKNIIIPDS-FTELGK--SVFYGCTDLESISIQNN--KLRIGGSLFYNCSGL 278 (394)
T ss_dssp E-----------------ECTTTTTTCCCCEEEECTT-CCEECS--STTTTCSSCCEEEECCT--TCEECSCTTTTCTTC
T ss_pred E-----------------eehhhcccCCCceEEECCC-ceeccc--ccccccccceeEEcCCC--cceeecccccccccc
Confidence 1 0011112234555444311 111100 00111234555555432 223333344555566
Q ss_pred cceeeccccccceeeeccCCcccccCCCCccEEEEeCCCCCCCCcc--cccCCCCCEEeeccCccchhhcccCccccccc
Q 007687 424 NRLRIAECKKLEELKMDYTGEVQQFVFHSLKKVEIVNSYKLKDLTF--LVFAPNLESIEVLGCVAMEEMVSVGKFAAVPE 501 (593)
Q Consensus 424 ~~L~l~~~~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 501 (593)
+.+...... +...... .+.+|+.+.+.+. ++.+.. +..+.+|+.+.|... ++.+..
T Consensus 279 ~~~~~~~~~----i~~~~F~-----~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~--------- 336 (394)
T 4fs7_A 279 KKVIYGSVI----VPEKTFY-----GCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPYL--VEEIGK--------- 336 (394)
T ss_dssp CEEEECSSE----ECTTTTT-----TCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCTT--CCEECT---------
T ss_pred ceeccCcee----ecccccc-----ccccccccccccc--cceechhhhcCCCCCCEEEeCCc--ccEEhH---------
Confidence 655544321 1111111 2567777777542 443332 556677777777532 333322
Q ss_pred ccCCCCCCcccceecccccccCcccCCCCC-CCCccceeee
Q 007687 502 VTANLNPFAKLQYLDLVGAINLKSIYWMPL-SFPLLKYLRA 541 (593)
Q Consensus 502 ~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~-~~~~L~~L~i 541 (593)
..+.++.+|+.+.+.. +++.+..... .+++|+.+.+
T Consensus 337 --~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 337 --RSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVEL 373 (394)
T ss_dssp --TTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEE
T ss_pred --HhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEE
Confidence 1445667777777753 3555544322 3556666655
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.17 E-value=4.7e-07 Score=79.73 Aligned_cols=18 Identities=33% Similarity=0.442 Sum_probs=8.9
Q ss_pred CCcccceecccccccCcc
Q 007687 508 PFAKLQYLDLVGAINLKS 525 (593)
Q Consensus 508 ~~~~L~~L~l~~c~~L~~ 525 (593)
.+++|++|++++|+.+++
T Consensus 137 ~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GCTTCCEEEEESCTTCCC
T ss_pred cCCCCCEEECCCCCCCCc
Confidence 345555555555554443
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.05 E-value=0.00031 Score=71.43 Aligned_cols=100 Identities=13% Similarity=0.188 Sum_probs=61.0
Q ss_pred cccEEEccCccCcccchhhhccCCCCcEEEcCCC---CCCcCC-cccCCCCCCcEeeCCCCcCcccc-hhhhccccCcee
Q 007687 237 HLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHA---ELTELP-VGISDLVSLQHLDLSESDISELP-GELKALVNLKCL 311 (593)
Q Consensus 237 ~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~---~l~~lp-~~i~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L 311 (593)
.|+.+.+..+ ++.+...+|.++.+|+.+.+..+ .++.++ ..|..+.+|+.+.+..+ ++.++ ..+..+.+|+.+
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 4677766543 66677777777777777777654 255553 35666667776665543 44444 235566677777
Q ss_pred eccccccccccchhhcCCCccCceeeccC
Q 007687 312 NLEWTRNLITIPRQLISNLSRLHVLRMFG 340 (593)
Q Consensus 312 ~l~~~~~l~~lp~~~i~~l~~L~~L~l~~ 340 (593)
.+... +..++...+..+.+|+.+.+..
T Consensus 143 ~lp~~--~~~I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 143 TIPEG--VTSVADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp ECCTT--CCEECTTTTTTCTTCCEEECCT
T ss_pred cccce--eeeecccceecccccccccccc
Confidence 76543 4555655566666777666543
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.03 E-value=5.8e-06 Score=82.74 Aligned_cols=54 Identities=13% Similarity=0.079 Sum_probs=23.8
Q ss_pred cceeEEEeeccCcccccccccCCcccEEEccCccCcccchhhhc--cCCCCcEEEcC
Q 007687 214 ENVRRISLMDNQITNLSEVATCRHLLTLFLNQNKLQMIHNDFFR--FMPSLKVLNLS 268 (593)
Q Consensus 214 ~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~--~l~~Lr~L~L~ 268 (593)
++|+.|.+.++.-..++. ...++|+.|.+..+.++.-.-..+. .+++|++|+|+
T Consensus 172 P~L~~L~L~g~~~l~l~~-~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 172 PLLNNLKIKGTNNLSIGK-KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp TTCCEEEEECCBTCBCCS-CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred CCCcEEEEeCCCCceecc-ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 455555555542112222 1245555555555544321111122 45555555553
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.98 E-value=2.3e-06 Score=81.30 Aligned_cols=82 Identities=24% Similarity=0.246 Sum_probs=50.5
Q ss_pred ccCCCCcEEEcCCCCCCcC---CcccCCCCCCcEeeCCCCcCcccchhhhccc--cCceeeccccccccccc------hh
Q 007687 257 RFMPSLKVLNLSHAELTEL---PVGISDLVSLQHLDLSESDISELPGELKALV--NLKCLNLEWTRNLITIP------RQ 325 (593)
Q Consensus 257 ~~l~~Lr~L~L~~~~l~~l---p~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~--~L~~L~l~~~~~l~~lp------~~ 325 (593)
.++++|+.|+|++|.++.+ |..++.+++|++|+|++|.++.+. .+..+. +|+.|++++|.....+| ..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 4566777777777766644 344556777777777777776652 244444 77777777775433343 12
Q ss_pred hcCCCccCceeecc
Q 007687 326 LISNLSRLHVLRMF 339 (593)
Q Consensus 326 ~i~~l~~L~~L~l~ 339 (593)
++..+++|+.|+..
T Consensus 246 il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 246 IRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHCTTCCEESSC
T ss_pred HHHHCcccCeECCc
Confidence 35667777777654
No 157
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.96 E-value=1.6e-05 Score=79.63 Aligned_cols=80 Identities=18% Similarity=0.217 Sum_probs=41.0
Q ss_pred ccCCcccEEEccCccCc---------ccchhhhccCCCCcEEEcCCCCCCcCCcccCCCCCCcEeeCCCCcCccc-chhh
Q 007687 233 ATCRHLLTLFLNQNKLQ---------MIHNDFFRFMPSLKVLNLSHAELTELPVGISDLVSLQHLDLSESDISEL-PGEL 302 (593)
Q Consensus 233 ~~~~~Lr~L~l~~~~l~---------~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~l-p~~i 302 (593)
..+++|+.|.+.+.... .-...++..+++|+.|+|+++.-..+|. +. +++|++|++..|.+..- ...+
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l 213 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDI 213 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHH
Confidence 35667777776543211 0112335566777777776662223433 32 56666666666654411 1122
Q ss_pred h--ccccCceeecc
Q 007687 303 K--ALVNLKCLNLE 314 (593)
Q Consensus 303 ~--~L~~L~~L~l~ 314 (593)
. .+++|++|+|+
T Consensus 214 ~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 214 LGSDLPNLEKLVLY 227 (362)
T ss_dssp HHSBCTTCCEEEEE
T ss_pred HHccCCCCcEEEEe
Confidence 2 45666666654
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.93 E-value=7.1e-06 Score=73.90 Aligned_cols=107 Identities=15% Similarity=0.106 Sum_probs=52.1
Q ss_pred ccCCcccEEEccCc-cCcc-----cchhhhccCCCCcEEEcCCCCCCc-----CCcccCCCCCCcEeeCCCCcCcc----
Q 007687 233 ATCRHLLTLFLNQN-KLQM-----IHNDFFRFMPSLKVLNLSHAELTE-----LPVGISDLVSLQHLDLSESDISE---- 297 (593)
Q Consensus 233 ~~~~~Lr~L~l~~~-~l~~-----~~~~~~~~l~~Lr~L~L~~~~l~~-----lp~~i~~L~~L~~L~L~~~~i~~---- 297 (593)
...+.|++|++++| .+.. +.. .+...++|++|+|++|.+.. +...+...++|++|+|++|.|..
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~-~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAE-ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHH-HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHH-HHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 44555666666655 4432 111 23445556666666665542 23334444556666666665552
Q ss_pred -cchhhhccccCceeec--cccccccc-----cchhhcCCCccCceeeccCCC
Q 007687 298 -LPGELKALVNLKCLNL--EWTRNLIT-----IPRQLISNLSRLHVLRMFGAS 342 (593)
Q Consensus 298 -lp~~i~~L~~L~~L~l--~~~~~l~~-----lp~~~i~~l~~L~~L~l~~~~ 342 (593)
+...+...++|++|++ ++| .++. +... +...++|++|++.++.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~-L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANM-LEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHH-HHHCSSCCEEECCCSS
T ss_pred HHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHH-HHhCCCcCEEeccCCC
Confidence 3344555555666666 444 2221 1221 3344555555555443
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.89 E-value=9.9e-06 Score=72.91 Aligned_cols=104 Identities=14% Similarity=0.172 Sum_probs=82.7
Q ss_pred CcceeEEEeecc-Cccc-----ccc-cccCCcccEEEccCccCcccc----hhhhccCCCCcEEEcCCCCCCc-----CC
Q 007687 213 WENVRRISLMDN-QITN-----LSE-VATCRHLLTLFLNQNKLQMIH----NDFFRFMPSLKVLNLSHAELTE-----LP 276 (593)
Q Consensus 213 ~~~lr~L~l~~~-~~~~-----l~~-~~~~~~Lr~L~l~~~~l~~~~----~~~~~~l~~Lr~L~L~~~~l~~-----lp 276 (593)
.+++++|++++| .+.. +.. ....++|++|++++|.+..-. ...+...+.|++|+|++|.+.. +.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 368999999998 7764 222 266789999999999976422 2235667899999999999873 56
Q ss_pred cccCCCCCCcEeeC--CCCcCcc-----cchhhhccccCceeecccc
Q 007687 277 VGISDLVSLQHLDL--SESDISE-----LPGELKALVNLKCLNLEWT 316 (593)
Q Consensus 277 ~~i~~L~~L~~L~L--~~~~i~~-----lp~~i~~L~~L~~L~l~~~ 316 (593)
..+....+|++|+| ++|.+.. +...+...++|++|++++|
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 77888899999999 8888873 5566777899999999998
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.85 E-value=2e-05 Score=74.79 Aligned_cols=94 Identities=23% Similarity=0.317 Sum_probs=71.7
Q ss_pred EEeeccCccccccc-----ccCCcccEEEccCccCcccch--hhhccCCCCcEEEcCCCCCCcCCcccCCCC--CCcEee
Q 007687 219 ISLMDNQITNLSEV-----ATCRHLLTLFLNQNKLQMIHN--DFFRFMPSLKVLNLSHAELTELPVGISDLV--SLQHLD 289 (593)
Q Consensus 219 L~l~~~~~~~l~~~-----~~~~~Lr~L~l~~~~l~~~~~--~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~--~L~~L~ 289 (593)
+++..|....++.. ..+++|++|+|++|.++.++. ..+..+++|++|+|++|.+..+. .+..+. +|++|+
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~ 226 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELW 226 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEE
Confidence 55556654444332 568999999999999887653 44678999999999999999773 444444 999999
Q ss_pred CCCCcCc-ccc-------hhhhccccCceeec
Q 007687 290 LSESDIS-ELP-------GELKALVNLKCLNL 313 (593)
Q Consensus 290 L~~~~i~-~lp-------~~i~~L~~L~~L~l 313 (593)
|++|.+. .+| ..+..+++|+.||-
T Consensus 227 L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 227 LDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp CTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred ccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 9999887 344 24778999999984
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.82 E-value=0.00092 Score=67.87 Aligned_cols=272 Identities=13% Similarity=0.204 Sum_probs=141.8
Q ss_pred ceeEEEeeccCccccccc--ccCCcccEEEccCcc---CcccchhhhccCCCCcEEEcCCCCCCcCC-cccCCCCCCcEe
Q 007687 215 NVRRISLMDNQITNLSEV--ATCRHLLTLFLNQNK---LQMIHNDFFRFMPSLKVLNLSHAELTELP-VGISDLVSLQHL 288 (593)
Q Consensus 215 ~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~---l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L 288 (593)
.|+.+.+.. .++.+... .+|.+|+.+.+..+. ++.+....|..+..|+.+.+..+ ++.++ ..+..+.+|+.+
T Consensus 65 ~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 65 VLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred cCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 477777753 35655544 678888888887653 77777777888888887766544 45553 356777788888
Q ss_pred eCCCCcCcccc-hhhhccccCceeeccccccccccchhhcCCCccCceeeccCCCCC----CCCCCCcccccc-------
Q 007687 289 DLSESDISELP-GELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFGASHN----AFDGASEDSILF------- 356 (593)
Q Consensus 289 ~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~----~~~~~~~~~~~~------- 356 (593)
.+..+ +..++ ..+..+.+|+.+.+..+ +..+...++.. .+|+.+.+...-.. .+.+........
T Consensus 143 ~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~-~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~ 218 (394)
T 4gt6_A 143 TIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTG-TALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYP 218 (394)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTT-CCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSC
T ss_pred cccce-eeeecccceecccccccccccce--eeEeccccccc-cceeEEEECCcccccccchhhhccccceecccccccc
Confidence 77643 34443 33556667777776554 45555543432 45665554432111 000000000000
Q ss_pred CCc----------ccchhhhcCCCCCceEEEEecCccchhhhhhcccccccceEEEecccCCCceeeeccccccccccce
Q 007687 357 GGG----------ALIVEELLGLKYLEVISFTLRSSHGLQSVLSSHKLRCCTRALLLQCFNDSTSLEVSALADLKQLNRL 426 (593)
Q Consensus 357 ~~~----------~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L 426 (593)
... ............+....+. .....+.. ........|+.+.+... ...+...++..+.+|+.+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~--~aF~~c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i 293 (394)
T 4gt6_A 219 AIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIET--HAFDSCAYLASVKMPDS--VVSIGTGAFMNCPALQDI 293 (394)
T ss_dssp BSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECT--TTTTTCSSCCEEECCTT--CCEECTTTTTTCTTCCEE
T ss_pred cccceeecccccccccccccccccccceEEcC-CcceEccc--ceeeecccccEEecccc--cceecCcccccccccccc
Confidence 000 0000000111111111111 00000000 01112235666665432 233443566777888888
Q ss_pred eeccccccceeeeccCCcccccCCCCccEEEEeCCCCCCCCcc--cccCCCCCEEeeccCccchhhcccCcccccccccC
Q 007687 427 RIAECKKLEELKMDYTGEVQQFVFHSLKKVEIVNSYKLKDLTF--LVFAPNLESIEVLGCVAMEEMVSVGKFAAVPEVTA 504 (593)
Q Consensus 427 ~l~~~~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 504 (593)
.+.. .+..+....+. .+.+|+.+.|.. .++.+.. +..+.+|+.+.|... ++.+.. .
T Consensus 294 ~l~~--~i~~I~~~aF~-----~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~-----------~ 351 (394)
T 4gt6_A 294 EFSS--RITELPESVFA-----GCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPSS--VTKIPE-----------S 351 (394)
T ss_dssp ECCT--TCCEECTTTTT-----TCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECTT--CCBCCG-----------G
T ss_pred cCCC--cccccCceeec-----CCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECcc--cCEEhH-----------h
Confidence 8853 34544444333 267888888864 2444432 567788888888543 444322 1
Q ss_pred CCCCCcccceecccc
Q 007687 505 NLNPFAKLQYLDLVG 519 (593)
Q Consensus 505 ~~~~~~~L~~L~l~~ 519 (593)
.+.++++|+.+.+.+
T Consensus 352 aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 352 AFSNCTALNNIEYSG 366 (394)
T ss_dssp GGTTCTTCCEEEESS
T ss_pred HhhCCCCCCEEEECC
Confidence 456778888888876
No 162
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.78 E-value=2.4e-05 Score=68.77 Aligned_cols=40 Identities=15% Similarity=0.236 Sum_probs=20.6
Q ss_pred cccceeeccccccceeeeccCCcccccCCCCccEEEEeCCCCCCC
Q 007687 422 QLNRLRIAECKKLEELKMDYTGEVQQFVFHSLKKVEIVNSYKLKD 466 (593)
Q Consensus 422 ~L~~L~l~~~~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 466 (593)
+|++|+|++|..+++-...... .+++|++|+|++|+.+++
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~-----~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALH-----HFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGG-----GCTTCCEEEEESCTTCCC
T ss_pred CCCEEEcCCCCcCCHHHHHHHh-----cCCCCCEEECCCCCCCCc
Confidence 4556666655544432222222 256666666666666655
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.54 E-value=0.006 Score=61.36 Aligned_cols=119 Identities=11% Similarity=0.177 Sum_probs=50.7
Q ss_pred cceeEEEeeccCccccccc--ccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCc-ccCCCCCCcEeeC
Q 007687 214 ENVRRISLMDNQITNLSEV--ATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPV-GISDLVSLQHLDL 290 (593)
Q Consensus 214 ~~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~L~~L~~L~L 290 (593)
.+++.+.+. ..++.++.. ..|.+|+.+.+..+ ++.+...+|.++ .|..+.+..+ ++.++. .+.. .+|+.+.+
T Consensus 46 ~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~l 120 (379)
T 4h09_A 46 DRISEVRVN-SGITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFEF 120 (379)
T ss_dssp GGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEEC
T ss_pred cCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcccccC
Confidence 345555443 233444332 45555665555432 555555555555 3444444322 333332 2222 34555555
Q ss_pred CCCcCcccchhhhccccCceeeccccccccccchhhcCCCccCceeeccC
Q 007687 291 SESDISELPGELKALVNLKCLNLEWTRNLITIPRQLISNLSRLHVLRMFG 340 (593)
Q Consensus 291 ~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~ 340 (593)
..+ ++.+....-.-.+|+.+.+..+ +..+....+..+.+++...+..
T Consensus 121 p~~-~~~i~~~~F~~~~l~~~~~~~~--v~~i~~~~f~~~~~l~~~~~~~ 167 (379)
T 4h09_A 121 PGA-TTEIGNYIFYNSSVKRIVIPKS--VTTIKDGIGYKAENLEKIEVSS 167 (379)
T ss_dssp CTT-CCEECTTTTTTCCCCEEEECTT--CCEECSCTTTTCTTCCEEEECT
T ss_pred CCc-cccccccccccceeeeeeccce--eeccccchhccccccccccccc
Confidence 443 2223222111123444433332 3344443455555555555443
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.63 E-value=0.0066 Score=61.06 Aligned_cols=102 Identities=21% Similarity=0.209 Sum_probs=55.1
Q ss_pred ccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCCcCCc-ccCCCCCCcEeeCCCCcCcccc-hhhhccccCce
Q 007687 233 ATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELTELPV-GISDLVSLQHLDLSESDISELP-GELKALVNLKC 310 (593)
Q Consensus 233 ~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~ 310 (593)
..+..|+.+.+..+ ++.+....|.++..|+.+.+..+ +..++. .+..+.+|+.+.+.++.++.++ ..+.++.+|+.
T Consensus 237 ~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~ 314 (379)
T 4h09_A 237 YGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSS 314 (379)
T ss_dssp TTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCE
T ss_pred cCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCE
Confidence 44555555555443 44555555555666666655432 444432 4555666666666655555554 33555566666
Q ss_pred eeccccccccccchhhcCCCccCceeec
Q 007687 311 LNLEWTRNLITIPRQLISNLSRLHVLRM 338 (593)
Q Consensus 311 L~l~~~~~l~~lp~~~i~~l~~L~~L~l 338 (593)
+.+..+ ++.++..++.++++|+.+.+
T Consensus 315 i~lp~~--l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 315 VTLPTA--LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp EECCTT--CCEECTTTTTTCTTCCCCCC
T ss_pred EEcCcc--ccEEHHHHhhCCCCCCEEEE
Confidence 666443 45555555556666665554
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.77 E-value=0.014 Score=48.51 Aligned_cols=33 Identities=27% Similarity=0.323 Sum_probs=14.4
Q ss_pred CCcEEEcCCCCCCcCCc-ccCCCCCCcEeeCCCC
Q 007687 261 SLKVLNLSHAELTELPV-GISDLVSLQHLDLSES 293 (593)
Q Consensus 261 ~Lr~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~ 293 (593)
+|++|+|++|.|+.+|. .|..+.+|++|+|.+|
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 34444444444444433 2334444444444444
No 166
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.32 E-value=0.024 Score=47.05 Aligned_cols=55 Identities=16% Similarity=0.210 Sum_probs=43.3
Q ss_pred EEEeeccCcc--cccccccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCCCCC
Q 007687 218 RISLMDNQIT--NLSEVATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHAELT 273 (593)
Q Consensus 218 ~L~l~~~~~~--~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~~l~ 273 (593)
+++.+++.++ .+|.. -..+|+.|+|++|.++.++...|..+++|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~-lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA-FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSC-CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCC-CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555666666 56532 2246899999999999999998999999999999999765
No 167
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.82 E-value=0.081 Score=47.18 Aligned_cols=39 Identities=15% Similarity=0.177 Sum_probs=17.0
Q ss_pred cCCCCcEEEcCCCCCC-----cCCcccCCCCCCcEeeCCCCcCc
Q 007687 258 FMPSLKVLNLSHAELT-----ELPVGISDLVSLQHLDLSESDIS 296 (593)
Q Consensus 258 ~l~~Lr~L~L~~~~l~-----~lp~~i~~L~~L~~L~L~~~~i~ 296 (593)
.-..|+.|+|++|.+. .+.+.+..-..|++|+|++|.|.
T Consensus 68 ~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 68 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 3344555555555443 12222333344555555555444
No 168
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.31 E-value=0.11 Score=46.21 Aligned_cols=82 Identities=17% Similarity=0.183 Sum_probs=41.3
Q ss_pred cCCCCcEEEcCCC-CCC-----cCCcccCCCCCCcEeeCCCCcCc-----ccchhhhccccCceeeccccccccc-----
Q 007687 258 FMPSLKVLNLSHA-ELT-----ELPVGISDLVSLQHLDLSESDIS-----ELPGELKALVNLKCLNLEWTRNLIT----- 321 (593)
Q Consensus 258 ~l~~Lr~L~L~~~-~l~-----~lp~~i~~L~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~l~~----- 321 (593)
.-+.|+.|+|+++ .+. .+-+.+..-..|+.|+|++|.|. .+.+.+..=+.|++|+|++| .++.
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga~a 117 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELLAR 117 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHHHH
Confidence 3445555555553 443 23334444556666666666655 23333444456666666666 2321
Q ss_pred cchhhcCCCccCceeeccCC
Q 007687 322 IPRQLISNLSRLHVLRMFGA 341 (593)
Q Consensus 322 lp~~~i~~l~~L~~L~l~~~ 341 (593)
+-.. +..-+.|++|++.++
T Consensus 118 la~a-L~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 118 LLRS-TLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHH-TTTTCCCSEEECCCC
T ss_pred HHHH-HhhCCceeEEECCCC
Confidence 1111 334455666666543
No 169
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=58.62 E-value=19 Score=19.07 Aligned_cols=23 Identities=26% Similarity=0.229 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 007687 36 NVIALETELVKLIEAKNDVMARV 58 (593)
Q Consensus 36 ~~~~l~~~~~~L~~~~~~i~~k~ 58 (593)
|.++|-++.++|+++-+++.+|+
T Consensus 2 nadelykeledlqerlrklrkkl 24 (27)
T 3twe_A 2 NADELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566667777777776666554
No 170
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=38.51 E-value=1.1e+02 Score=39.05 Aligned_cols=63 Identities=6% Similarity=0.148 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHhhc--cchhhhhhhHHHHHHHHHHHHHHHHHHHhhChHHHHHhHhccccCCcccchhh
Q 007687 47 LIEAKNDVMARVVNAER--QPMMTRLNKVQGWLSRVDAVKAEADELIRHGSQEIEKLCLGGYCSKNCHSSYK 116 (593)
Q Consensus 47 L~~~~~~i~~k~~~a~~--~~~l~~~~~~~~W~~~l~~l~~~~~~i~~~~l~~~lk~Cf~~yc~s~fp~~~~ 116 (593)
|++-.+...+|+..|.+ + +| .....-|...++.++.+...+..+. .+-..|+.|| +-|..+|.
T Consensus 2061 L~~e~~~~~~kl~rA~~Li~-gL--~~Ek~RW~~~~~~l~~~~~~L~GD~---LLaaafisY~-G~f~~~~R 2125 (3245)
T 3vkg_A 2061 IKTESSKVKNKVDRSIALLD-NL--NSERGRWEQQSENFNTQMSTVVGDV---VLASAFLAYI-GFFDQNFR 2125 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHTG-GGSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-hh--hhccccHHHHHHHHHHHHHhccHHH---HHHHHHHHHc-CCCCHHHH
Confidence 33333444444444544 2 22 2234579998888888777765433 3344566999 89999885
No 171
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=37.47 E-value=32 Score=26.36 Aligned_cols=45 Identities=13% Similarity=0.132 Sum_probs=24.8
Q ss_pred cCcccchhhhccCCCCcEEEcCCCCCCcC-CcccCCCCCCcEeeCCC
Q 007687 247 KLQMIHNDFFRFMPSLKVLNLSHAELTEL-PVGISDLVSLQHLDLSE 292 (593)
Q Consensus 247 ~l~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~ 292 (593)
.++.|....|.++..|+.+.+-.+ ++.+ ...|.++.+|+.+.+.+
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 355566666666666666666543 3344 22455555555555544
No 172
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=27.85 E-value=46 Score=25.44 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=30.8
Q ss_pred ccCCcccEEEccCccCcccchhhhccCCCCcEEEcCCC
Q 007687 233 ATCRHLLTLFLNQNKLQMIHNDFFRFMPSLKVLNLSHA 270 (593)
Q Consensus 233 ~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L~~~ 270 (593)
..|..|+.+.+-.+ ++.+....|.+|.+|+.+.+.+.
T Consensus 17 ~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 17 AGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp TTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred cCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 67888888888765 77888888999999999998875
No 173
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=22.13 E-value=1.1e+02 Score=17.06 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007687 40 LETELVKLIEAKNDVMARV 58 (593)
Q Consensus 40 l~~~~~~L~~~~~~i~~k~ 58 (593)
|++++.+|+.+-.+.++++
T Consensus 4 lee~~r~l~~ivq~lq~r~ 22 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERL 22 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666655
Done!