BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007688
(593 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IUJ|A Chain A, Crystal Structure Of Soybean Lipoxygenase-B
Length = 853
Score = 336 bits (861), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 180/436 (41%), Positives = 253/436 (58%), Gaps = 14/436 (3%)
Query: 164 NVKAERVHYTAEFLVDSNFGTPGAITVANKHQKEFFLETITIEGFAC-GPVHFQCNSWVQ 222
+ A+ Y A+F DS+FG PGA + N Q EF+L+++ +E G +HF CNSWV
Sbjct: 87 TIGAKEEAYDAQFDWDSDFGIPGAFYIKNYMQNEFYLKSLILEDIPNHGTIHFICNSWVY 146
Query: 223 STKDHPGKRIFFANQPYLPSETPAGLRALREKELKDIRGTGKGVRKLSDRIYDYDVYNDL 282
++K + RIFFAN YLPSETPA L RE+ELK++RG G G RK DRIYDYDVYNDL
Sbjct: 147 NSKHYKTDRIFFANNTYLPSETPAPLVKYREEELKNVRGDGTGERKEWDRIYDYDVYNDL 206
Query: 283 GNPDRGSEFVRPSLGGEQRPYPRRCRTGRLPTDTDLLAESRIEKPLP-IYVPRDEQFEES 341
G+PD+G ++ RP LGG PYPRR RTGR T D EKP +Y+PRDE F
Sbjct: 207 GDPDKGEKYARPVLGGSALPYPRRGRTGRGKTRKD----PNSEKPGDFVYLPRDEAFGHL 262
Query: 342 KQDAFSAGRLKGALHNLIPLLKASISAR--NHDFSGFSDIDSLYSEXXXXXXXXXXXXXX 399
K F A +K +++P+L + + DF F+++ LY
Sbjct: 263 KSSDFLAYGIKSVAQDVLPVLTDAFDGNLLSLDFDNFAEVRKLYE---GGVTLPTNFLSN 319
Query: 400 XXXXXXVVSKIQESSQGLLKYNSPKILSRDKFAWLRDDEFARQALAGVNPVSIERLQAFP 459
+ + + LKY PK++ DK AW+ D+EFAR+ +AG+NP I+ ++ FP
Sbjct: 320 ITPIPIIKELFRTDGEQFLKYPPPKVMQVDKSAWMTDEEFARETIAGLNPNVIKIIEEFP 379
Query: 460 PVSNLDPKIYGPQESALKEEHIIGQLDGMSVQQALEENKLYVLDFHDIYLPFLDRINALD 519
S LD + YG + +EH+ L G++V+QA++ KL++LD HD +P+L +INA +
Sbjct: 380 LSSKLDTQAYGDHTCIITKEHLEPNLGGLTVEQAIQNKKLFILDHHDYLIPYLRKINA-N 438
Query: 520 GRKSYATRTIFFLNSLGTLKPIAIEXXXXXXXXXXX--XKRVLTPAADATSNWLWQLAKA 577
K+YATRTIFFL + GTL P+AIE V P+++ ++W LAKA
Sbjct: 439 TTKTYATRTIFFLKNDGTLTPLAIELSKPHPQGEEYGPVSEVYVPSSEGVEAYIWLLAKA 498
Query: 578 HVCSNDAGVHQLVNHW 593
+V NDA HQ+++HW
Sbjct: 499 YVVVNDACYHQIISHW 514
>pdb|1IK3|A Chain A, Lipoxygenase-3 (Soybean) Complex With 13(S)-Hydroperoxy-
9(Z),11(E)-Octadecadienoic Acid
pdb|1HU9|A Chain A, Lipoxygenase-3 (Soybean) Complex With 4-Hydroperoxy-2-
Methoxy-Phenol
pdb|1JNQ|A Chain A, Lipoxygenase-3 (Soybean) Complex With Epigallocathechin
(Egc)
pdb|1N8Q|A Chain A, Lipoxygenase In Complex With Protocatechuic Acid
pdb|1NO3|A Chain A, Refined Structure Of Soybean Lipoxygenase-3 With
4-nitrocatechol At 2.15 Angstrom Resolution
pdb|1RRH|A Chain A, Soybean Lipoxygenase (Lox-3) At Ambient Temperatures At
2.0 A Resolution
pdb|1RRL|A Chain A, Soybean Lipoxygenase (Lox-3) At 93k At 2.0 A Resolution
pdb|1RRL|B Chain B, Soybean Lipoxygenase (Lox-3) At 93k At 2.0 A Resolution
pdb|1LNH|A Chain A, Lipoxygenase-3(Soybean) Non-Heme Fe(Ii) Metalloprotein
Length = 857
Score = 335 bits (859), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 195/480 (40%), Positives = 267/480 (55%), Gaps = 14/480 (2%)
Query: 121 FDALTEKIGRNVVLELV-GTEVDPRTKGPKKSREAVLKDWSKKSNVKAERVHYTAEFLVD 179
D LT +GR+V L+L+ T+ D KG + + + A + + F D
Sbjct: 47 LDTLTAFLGRSVSLQLISATKADANGKGKLGKATFLEGIITSLPTLGAGQSAFKINFEWD 106
Query: 180 SNFGTPGAITVANKHQKEFFLETITIEGFAC-GPVHFQCNSWVQSTKDHPGKRIFFANQP 238
G PGA + N Q EFFL ++T+E G +HF CNSW+ + K RIFFANQ
Sbjct: 107 DGSGIPGAFYIKNFMQTEFFLVSLTLEDIPNHGSIHFVCNSWIYNAKLFKSDRIFFANQT 166
Query: 239 YLPSETPAGLRALREKELKDIRGTGKGVRKLSDRIYDYDVYNDLGNPDRGSEFVRPSLGG 298
YLPSETPA L RE+EL ++RG G G RK +RIYDYDVYNDLG+PD+G RP LGG
Sbjct: 167 YLPSETPAPLVKYREEELHNLRGDGTGERKEWERIYDYDVYNDLGDPDKGENHARPVLGG 226
Query: 299 EQR-PYPRRCRTGRLPTDTDLLAESRIEKPLPIYVPRDEQFEESKQDAFSAGRLKGALHN 357
PYPRR RTGR PT D +ESR +Y+PRDE F K F LK N
Sbjct: 227 NDTFPYPRRGRTGRKPTRKDPNSESRSND---VYLPRDEAFGHLKSSDFLTYGLKSVSQN 283
Query: 358 LIPLLKAS--ISARNHDFSGFSDIDSLYSEXXXXXXXXXXXXXXXXXXXXVVSKIQESSQ 415
++PLL+++ ++ +F F ++ LYS + E +
Sbjct: 284 VLPLLQSAFDLNFTPREFDSFDEVHGLYSGGIKLPTDIISKISPLPVLKEIFRTDGEQA- 342
Query: 416 GLLKYNSPKILSRDKFAWLRDDEFARQALAGVNPVSIERLQAFPPVSNLDPKIYGPQESA 475
LK+ PK++ K AW+ D+EFAR+ LAGVNP I L+ FPP S LD ++YG S
Sbjct: 343 --LKFPPPKVIQVSKSAWMTDEEFAREMLAGVNPNLIRCLKDFPPRSKLDSQVYGDHTSQ 400
Query: 476 LKEEHIIGQLDGMSVQQALEENKLYVLDFHDIYLPFLDRINALDGRKSYATRTIFFLNSL 535
+ +EH+ L+G++V +A++ +L++LD HD +P+L RINA K+YATRTI FL +
Sbjct: 401 ITKEHLEPNLEGLTVDEAIQNKRLFLLDHHDPIMPYLRRINA-TSTKAYATRTILFLKND 459
Query: 536 GTLKPIAIEXX--XXXXXXXXXXKRVLTPAADATSNWLWQLAKAHVCSNDAGVHQLVNHW 593
GTL+P+AIE +V PA + + +W LAKA+V ND+ HQLV+HW
Sbjct: 460 GTLRPLAIELSLPHPQGDQSGAFSQVFLPADEGVESSIWLLAKAYVVVNDSCYHQLVSHW 519
>pdb|1Y4K|A Chain A, Lipoxygenase-1 (Soybean) At 100k, N694g Mutant
Length = 839
Score = 333 bits (854), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 199/508 (39%), Positives = 284/508 (55%), Gaps = 24/508 (4%)
Query: 96 KFKVRAVLTVRKNIKEDFKETLVNQFDALTEKIGRNVVLELV-GTEVDPRTKGPKKSREA 154
K K VL + ++ + + V+ +A +GR+V L+L+ T+ D KG K ++
Sbjct: 7 KIKGTVVLMPKNELEVNPDGSAVDNLNAF---LGRSVSLQLISATKADAHGKG-KVGKDT 62
Query: 155 VLKDWSKK-SNVKAERVHYTAEFLVDSNFGTPGAITVANKHQKEFFLETITIEGFAC-GP 212
L+ + + A + F D + G PGA + N Q EFFL+++T+E + G
Sbjct: 63 FLEGINTSLPTLGAGESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGT 122
Query: 213 VHFQCNSWVQSTKDHPGKRIFFANQPYLPSETPAGLRALREKELKDIRGTGKGVRKLSDR 272
+ F CNSWV +TK + RIFFAN Y+PSETPA L + RE+ELK +RG G G RK DR
Sbjct: 123 IRFVCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYDR 182
Query: 273 IYDYDVYNDLGNPDRGSEFVRPSLGGEQR-PYPRRCRTGRLPTDTDLLAESRIEKPLPIY 331
IYDYDVYNDLGNPD+ + RP LGG PYPRR RTGR PT TD E + E Y
Sbjct: 183 IYDYDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEV---FY 239
Query: 332 VPRDEQFEESK-QDAFSAGRLKGALHNLIPLLKASISARNH--DFSGFSDIDSLYSEXXX 388
VPRDE K +DA G K + P +++ ++ +F F D+ LY
Sbjct: 240 VPRDENLGHLKSKDALEIGT-KSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYE---- 294
Query: 389 XXXXXXXXXXXXXXXXXVVSKIQES-SQGLLKYNSPKILSRDKFAWLRDDEFARQALAGV 447
V+ ++ + Q +LK+ P ++ + AW+ D+EFAR+ +AGV
Sbjct: 295 GGIKLPRDVISTIIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGV 354
Query: 448 NPVSIERLQAFPPVSNLDPKIYGPQESALKEEHIIGQLDGMSVQQALEENKLYVLDFHDI 507
NP I L+ FPP SNLDP IYG Q S + + + LDG ++ +AL +L++LD+HDI
Sbjct: 355 NPCVIRGLEEFPPKSNLDPAIYGDQSSKITADSL--DLDGYTMDEALGSRRLFMLDYHDI 412
Query: 508 YLPFLDRINALDGRKSYATRTIFFLNSLGTLKPIAIEXX--XXXXXXXXXXKRVLTPAAD 565
++P++ +IN L+ K+YATRTI FL GTLKP+AIE +V+ PA +
Sbjct: 413 FMPYVRQINQLNSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKE 472
Query: 566 ATSNWLWQLAKAHVCSNDAGVHQLVNHW 593
+ +W LAKA+V ND+ HQL++HW
Sbjct: 473 GVESTIWLLAKAYVIVNDSCYHQLMSHW 500
>pdb|1FGR|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697e Mutant
Length = 839
Score = 333 bits (854), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 199/508 (39%), Positives = 284/508 (55%), Gaps = 24/508 (4%)
Query: 96 KFKVRAVLTVRKNIKEDFKETLVNQFDALTEKIGRNVVLELV-GTEVDPRTKGPKKSREA 154
K K VL + ++ + + V+ +A +GR+V L+L+ T+ D KG K ++
Sbjct: 7 KIKGTVVLMPKNELEVNPDGSAVDNLNAF---LGRSVSLQLISATKADAHGKG-KVGKDT 62
Query: 155 VLKDWSKK-SNVKAERVHYTAEFLVDSNFGTPGAITVANKHQKEFFLETITIEGFAC-GP 212
L+ + + A + F D + G PGA + N Q EFFL+++T+E + G
Sbjct: 63 FLEGINTSLPTLGAGESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGT 122
Query: 213 VHFQCNSWVQSTKDHPGKRIFFANQPYLPSETPAGLRALREKELKDIRGTGKGVRKLSDR 272
+ F CNSWV +TK + RIFFAN Y+PSETPA L + RE+ELK +RG G G RK DR
Sbjct: 123 IRFVCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYDR 182
Query: 273 IYDYDVYNDLGNPDRGSEFVRPSLGGEQR-PYPRRCRTGRLPTDTDLLAESRIEKPLPIY 331
IYDYDVYNDLGNPD+ + RP LGG PYPRR RTGR PT TD E + E Y
Sbjct: 183 IYDYDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEV---FY 239
Query: 332 VPRDEQFEESK-QDAFSAGRLKGALHNLIPLLKASISARNH--DFSGFSDIDSLYSEXXX 388
VPRDE K +DA G K + P +++ ++ +F F D+ LY
Sbjct: 240 VPRDENLGHLKSKDALEIGT-KSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYE---- 294
Query: 389 XXXXXXXXXXXXXXXXXVVSKIQES-SQGLLKYNSPKILSRDKFAWLRDDEFARQALAGV 447
V+ ++ + Q +LK+ P ++ + AW+ D+EFAR+ +AGV
Sbjct: 295 GGIKLPRDVISTIIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGV 354
Query: 448 NPVSIERLQAFPPVSNLDPKIYGPQESALKEEHIIGQLDGMSVQQALEENKLYVLDFHDI 507
NP I L+ FPP SNLDP IYG Q S + + + LDG ++ +AL +L++LD+HDI
Sbjct: 355 NPCVIRGLEEFPPKSNLDPAIYGDQSSKITADSL--DLDGYTMDEALGSRRLFMLDYHDI 412
Query: 508 YLPFLDRINALDGRKSYATRTIFFLNSLGTLKPIAIEXXXXXXX--XXXXXKRVLTPAAD 565
++P++ +IN L+ K+YATRTI FL GTLKP+AIE +V+ PA +
Sbjct: 413 FMPYVRQINQLNSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKE 472
Query: 566 ATSNWLWQLAKAHVCSNDAGVHQLVNHW 593
+ +W LAKA+V ND+ HQL++HW
Sbjct: 473 GVESTIWLLAKAYVIVNDSCYHQLMSHW 500
>pdb|1FGT|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697n Mutant
Length = 839
Score = 333 bits (853), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 199/508 (39%), Positives = 284/508 (55%), Gaps = 24/508 (4%)
Query: 96 KFKVRAVLTVRKNIKEDFKETLVNQFDALTEKIGRNVVLELV-GTEVDPRTKGPKKSREA 154
K K VL + ++ + + V+ +A +GR+V L+L+ T+ D KG K ++
Sbjct: 7 KIKGTVVLMPKNELEVNPDGSAVDNLNAF---LGRSVSLQLISATKADAHGKG-KVGKDT 62
Query: 155 VLKDWSKK-SNVKAERVHYTAEFLVDSNFGTPGAITVANKHQKEFFLETITIEGFAC-GP 212
L+ + + A + F D + G PGA + N Q EFFL+++T+E + G
Sbjct: 63 FLEGINTSLPTLGAGESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGT 122
Query: 213 VHFQCNSWVQSTKDHPGKRIFFANQPYLPSETPAGLRALREKELKDIRGTGKGVRKLSDR 272
+ F CNSWV +TK + RIFFAN Y+PSETPA L + RE+ELK +RG G G RK DR
Sbjct: 123 IRFVCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYDR 182
Query: 273 IYDYDVYNDLGNPDRGSEFVRPSLGGEQR-PYPRRCRTGRLPTDTDLLAESRIEKPLPIY 331
IYDYDVYNDLGNPD+ + RP LGG PYPRR RTGR PT TD E + E Y
Sbjct: 183 IYDYDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEV---FY 239
Query: 332 VPRDEQFEESK-QDAFSAGRLKGALHNLIPLLKASISARNH--DFSGFSDIDSLYSEXXX 388
VPRDE K +DA G K + P +++ ++ +F F D+ LY
Sbjct: 240 VPRDENLGHLKSKDALEIGT-KSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYE---- 294
Query: 389 XXXXXXXXXXXXXXXXXVVSKIQES-SQGLLKYNSPKILSRDKFAWLRDDEFARQALAGV 447
V+ ++ + Q +LK+ P ++ + AW+ D+EFAR+ +AGV
Sbjct: 295 GGIKLPRDVISTIIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGV 354
Query: 448 NPVSIERLQAFPPVSNLDPKIYGPQESALKEEHIIGQLDGMSVQQALEENKLYVLDFHDI 507
NP I L+ FPP SNLDP IYG Q S + + + LDG ++ +AL +L++LD+HDI
Sbjct: 355 NPCVIRGLEEFPPKSNLDPAIYGDQSSKITADSL--DLDGYTMDEALGSRRLFMLDYHDI 412
Query: 508 YLPFLDRINALDGRKSYATRTIFFLNSLGTLKPIAIEXXXXXXX--XXXXXKRVLTPAAD 565
++P++ +IN L+ K+YATRTI FL GTLKP+AIE +V+ PA +
Sbjct: 413 FMPYVRQINQLNSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKE 472
Query: 566 ATSNWLWQLAKAHVCSNDAGVHQLVNHW 593
+ +W LAKA+V ND+ HQL++HW
Sbjct: 473 GVESTIWLLAKAYVIVNDSCYHQLMSHW 500
>pdb|2SBL|B Chain B, The Three-Dimensional Structure Of An Arachidonic Acid 15-
Lipoxygenase
pdb|1F8N|A Chain A, Lipoxygenase-1 (Soybean) At 100k, New Refinement
pdb|1YGE|A Chain A, Lipoxygenase-1 (Soybean) At 100k
pdb|2SBL|A Chain A, The Three-Dimensional Structure Of An Arachidonic Acid 15-
Lipoxygenase
Length = 839
Score = 333 bits (853), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 199/508 (39%), Positives = 284/508 (55%), Gaps = 24/508 (4%)
Query: 96 KFKVRAVLTVRKNIKEDFKETLVNQFDALTEKIGRNVVLELV-GTEVDPRTKGPKKSREA 154
K K VL + ++ + + V+ +A +GR+V L+L+ T+ D KG K ++
Sbjct: 7 KIKGTVVLMPKNELEVNPDGSAVDNLNAF---LGRSVSLQLISATKADAHGKG-KVGKDT 62
Query: 155 VLKDWSKK-SNVKAERVHYTAEFLVDSNFGTPGAITVANKHQKEFFLETITIEGFAC-GP 212
L+ + + A + F D + G PGA + N Q EFFL+++T+E + G
Sbjct: 63 FLEGINTSLPTLGAGESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGT 122
Query: 213 VHFQCNSWVQSTKDHPGKRIFFANQPYLPSETPAGLRALREKELKDIRGTGKGVRKLSDR 272
+ F CNSWV +TK + RIFFAN Y+PSETPA L + RE+ELK +RG G G RK DR
Sbjct: 123 IRFVCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYDR 182
Query: 273 IYDYDVYNDLGNPDRGSEFVRPSLGGEQR-PYPRRCRTGRLPTDTDLLAESRIEKPLPIY 331
IYDYDVYNDLGNPD+ + RP LGG PYPRR RTGR PT TD E + E Y
Sbjct: 183 IYDYDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEV---FY 239
Query: 332 VPRDEQFEESK-QDAFSAGRLKGALHNLIPLLKASISARNH--DFSGFSDIDSLYSEXXX 388
VPRDE K +DA G K + P +++ ++ +F F D+ LY
Sbjct: 240 VPRDENLGHLKSKDALEIGT-KSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYE---- 294
Query: 389 XXXXXXXXXXXXXXXXXVVSKIQES-SQGLLKYNSPKILSRDKFAWLRDDEFARQALAGV 447
V+ ++ + Q +LK+ P ++ + AW+ D+EFAR+ +AGV
Sbjct: 295 GGIKLPRDVISTIIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGV 354
Query: 448 NPVSIERLQAFPPVSNLDPKIYGPQESALKEEHIIGQLDGMSVQQALEENKLYVLDFHDI 507
NP I L+ FPP SNLDP IYG Q S + + + LDG ++ +AL +L++LD+HDI
Sbjct: 355 NPCVIRGLEEFPPKSNLDPAIYGDQSSKITADSL--DLDGYTMDEALGSRRLFMLDYHDI 412
Query: 508 YLPFLDRINALDGRKSYATRTIFFLNSLGTLKPIAIEXXXXXXX--XXXXXKRVLTPAAD 565
++P++ +IN L+ K+YATRTI FL GTLKP+AIE +V+ PA +
Sbjct: 413 FMPYVRQINQLNSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKE 472
Query: 566 ATSNWLWQLAKAHVCSNDAGVHQLVNHW 593
+ +W LAKA+V ND+ HQL++HW
Sbjct: 473 GVESTIWLLAKAYVIVNDSCYHQLMSHW 500
>pdb|1FGM|A Chain A, Lipoxygenase-1 (Soybean) At 100k, N694h Mutant
Length = 839
Score = 333 bits (853), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 199/508 (39%), Positives = 284/508 (55%), Gaps = 24/508 (4%)
Query: 96 KFKVRAVLTVRKNIKEDFKETLVNQFDALTEKIGRNVVLELV-GTEVDPRTKGPKKSREA 154
K K VL + ++ + + V+ +A +GR+V L+L+ T+ D KG K ++
Sbjct: 7 KIKGTVVLMPKNELEVNPDGSAVDNLNAF---LGRSVSLQLISATKADAHGKG-KVGKDT 62
Query: 155 VLKDWSKK-SNVKAERVHYTAEFLVDSNFGTPGAITVANKHQKEFFLETITIEGFAC-GP 212
L+ + + A + F D + G PGA + N Q EFFL+++T+E + G
Sbjct: 63 FLEGINTSLPTLGAGESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGT 122
Query: 213 VHFQCNSWVQSTKDHPGKRIFFANQPYLPSETPAGLRALREKELKDIRGTGKGVRKLSDR 272
+ F CNSWV +TK + RIFFAN Y+PSETPA L + RE+ELK +RG G G RK DR
Sbjct: 123 IRFVCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYDR 182
Query: 273 IYDYDVYNDLGNPDRGSEFVRPSLGGEQR-PYPRRCRTGRLPTDTDLLAESRIEKPLPIY 331
IYDYDVYNDLGNPD+ + RP LGG PYPRR RTGR PT TD E + E Y
Sbjct: 183 IYDYDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEV---FY 239
Query: 332 VPRDEQFEESK-QDAFSAGRLKGALHNLIPLLKASISARNH--DFSGFSDIDSLYSEXXX 388
VPRDE K +DA G K + P +++ ++ +F F D+ LY
Sbjct: 240 VPRDENLGHLKSKDALEIGT-KSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYE---- 294
Query: 389 XXXXXXXXXXXXXXXXXVVSKIQES-SQGLLKYNSPKILSRDKFAWLRDDEFARQALAGV 447
V+ ++ + Q +LK+ P ++ + AW+ D+EFAR+ +AGV
Sbjct: 295 GGIKLPRDVISTIIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGV 354
Query: 448 NPVSIERLQAFPPVSNLDPKIYGPQESALKEEHIIGQLDGMSVQQALEENKLYVLDFHDI 507
NP I L+ FPP SNLDP IYG Q S + + + LDG ++ +AL +L++LD+HDI
Sbjct: 355 NPCVIRGLEEFPPKSNLDPAIYGDQSSKITADSL--DLDGYTMDEALGSRRLFMLDYHDI 412
Query: 508 YLPFLDRINALDGRKSYATRTIFFLNSLGTLKPIAIEXXXXXXX--XXXXXKRVLTPAAD 565
++P++ +IN L+ K+YATRTI FL GTLKP+AIE +V+ PA +
Sbjct: 413 FMPYVRQINQLNSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKE 472
Query: 566 ATSNWLWQLAKAHVCSNDAGVHQLVNHW 593
+ +W LAKA+V ND+ HQL++HW
Sbjct: 473 GVESTIWLLAKAYVIVNDSCYHQLMSHW 500
>pdb|3BNC|A Chain A, Lipoxygenase-1 (Soybean) I553g Mutant
Length = 839
Score = 332 bits (852), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 199/508 (39%), Positives = 283/508 (55%), Gaps = 24/508 (4%)
Query: 96 KFKVRAVLTVRKNIKEDFKETLVNQFDALTEKIGRNVVLELV-GTEVDPRTKGPKKSREA 154
K K VL + ++ + + V+ +A +GR+V L+L+ T+ D KG K ++
Sbjct: 7 KIKGTVVLMPKNELEVNPDGSAVDNLNAF---LGRSVSLQLISATKADAHGKG-KVGKDT 62
Query: 155 VLKDWSKK-SNVKAERVHYTAEFLVDSNFGTPGAITVANKHQKEFFLETITIEGFAC-GP 212
L+ + + A + F D + G PGA + N Q EFFL+++T+E + G
Sbjct: 63 FLEGINTSLPTLGAGESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGT 122
Query: 213 VHFQCNSWVQSTKDHPGKRIFFANQPYLPSETPAGLRALREKELKDIRGTGKGVRKLSDR 272
+ F CNSWV +TK + RIFFAN Y+PSETPA L RE+ELK +RG G G RK DR
Sbjct: 123 IRFVCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVEYREEELKSLRGNGTGERKEYDR 182
Query: 273 IYDYDVYNDLGNPDRGSEFVRPSLGGEQR-PYPRRCRTGRLPTDTDLLAESRIEKPLPIY 331
IYDYDVYNDLGNPD+ + RP LGG PYPRR RTGR PT TD E + E Y
Sbjct: 183 IYDYDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEV---FY 239
Query: 332 VPRDEQFEESK-QDAFSAGRLKGALHNLIPLLKASISARNH--DFSGFSDIDSLYSEXXX 388
VPRDE K +DA G K + P +++ ++ +F F D+ LY
Sbjct: 240 VPRDENLGHLKSKDALEIGT-KSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYE---- 294
Query: 389 XXXXXXXXXXXXXXXXXVVSKIQES-SQGLLKYNSPKILSRDKFAWLRDDEFARQALAGV 447
V+ ++ + Q +LK+ P ++ + AW+ D+EFAR+ +AGV
Sbjct: 295 GGIKLPRDVISTIIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGV 354
Query: 448 NPVSIERLQAFPPVSNLDPKIYGPQESALKEEHIIGQLDGMSVQQALEENKLYVLDFHDI 507
NP I L+ FPP SNLDP IYG Q S + + + LDG ++ +AL +L++LD+HDI
Sbjct: 355 NPCVIRGLEEFPPKSNLDPAIYGDQSSKITADSL--DLDGYTMDEALGSRRLFMLDYHDI 412
Query: 508 YLPFLDRINALDGRKSYATRTIFFLNSLGTLKPIAIEXX--XXXXXXXXXXKRVLTPAAD 565
++P++ +IN L+ K+YATRTI FL GTLKP+AIE +V+ PA +
Sbjct: 413 FMPYVRQINQLNSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKE 472
Query: 566 ATSNWLWQLAKAHVCSNDAGVHQLVNHW 593
+ +W LAKA+V ND+ HQL++HW
Sbjct: 473 GVESTIWLLAKAYVIVNDSCYHQLMSHW 500
>pdb|3BND|A Chain A, Lipoxygenase-1 (Soybean), I553v Mutant
Length = 839
Score = 332 bits (852), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 199/508 (39%), Positives = 283/508 (55%), Gaps = 24/508 (4%)
Query: 96 KFKVRAVLTVRKNIKEDFKETLVNQFDALTEKIGRNVVLELV-GTEVDPRTKGPKKSREA 154
K K VL + ++ + + V+ +A +GR+V L+L+ T+ D KG K ++
Sbjct: 7 KIKGTVVLMPKNELEVNPDGSAVDNLNAF---LGRSVSLQLISATKADAHGKG-KVGKDT 62
Query: 155 VLKDWSKK-SNVKAERVHYTAEFLVDSNFGTPGAITVANKHQKEFFLETITIEGFAC-GP 212
L+ + + A + F D + G PGA + N Q EFFL+++T+E + G
Sbjct: 63 FLEGINTSLPTLGAGESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGT 122
Query: 213 VHFQCNSWVQSTKDHPGKRIFFANQPYLPSETPAGLRALREKELKDIRGTGKGVRKLSDR 272
+ F CNSWV +TK + RIFFAN Y+PSETPA L RE+ELK +RG G G RK DR
Sbjct: 123 IRFVCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVEYREEELKSLRGNGTGERKEYDR 182
Query: 273 IYDYDVYNDLGNPDRGSEFVRPSLGGEQR-PYPRRCRTGRLPTDTDLLAESRIEKPLPIY 331
IYDYDVYNDLGNPD+ + RP LGG PYPRR RTGR PT TD E + E Y
Sbjct: 183 IYDYDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEV---FY 239
Query: 332 VPRDEQFEESK-QDAFSAGRLKGALHNLIPLLKASISARNH--DFSGFSDIDSLYSEXXX 388
VPRDE K +DA G K + P +++ ++ +F F D+ LY
Sbjct: 240 VPRDENLGHLKSKDALEIGT-KSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYE---- 294
Query: 389 XXXXXXXXXXXXXXXXXVVSKIQES-SQGLLKYNSPKILSRDKFAWLRDDEFARQALAGV 447
V+ ++ + Q +LK+ P ++ + AW+ D+EFAR+ +AGV
Sbjct: 295 GGIKLPRDVISTIIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGV 354
Query: 448 NPVSIERLQAFPPVSNLDPKIYGPQESALKEEHIIGQLDGMSVQQALEENKLYVLDFHDI 507
NP I L+ FPP SNLDP IYG Q S + + + LDG ++ +AL +L++LD+HDI
Sbjct: 355 NPCVIRGLEEFPPKSNLDPAIYGDQSSKITADSL--DLDGYTMDEALGSRRLFMLDYHDI 412
Query: 508 YLPFLDRINALDGRKSYATRTIFFLNSLGTLKPIAIEXXXXXXX--XXXXXKRVLTPAAD 565
++P++ +IN L+ K+YATRTI FL GTLKP+AIE +V+ PA +
Sbjct: 413 FMPYVRQINQLNSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKE 472
Query: 566 ATSNWLWQLAKAHVCSNDAGVHQLVNHW 593
+ +W LAKA+V ND+ HQL++HW
Sbjct: 473 GVESTIWLLAKAYVIVNDSCYHQLMSHW 500
>pdb|3BNE|A Chain A, Lipoxygenase-1 (Soybean) I553a Mutant
Length = 839
Score = 332 bits (852), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 199/508 (39%), Positives = 283/508 (55%), Gaps = 24/508 (4%)
Query: 96 KFKVRAVLTVRKNIKEDFKETLVNQFDALTEKIGRNVVLELV-GTEVDPRTKGPKKSREA 154
K K VL + ++ + + V+ +A +GR+V L+L+ T+ D KG K ++
Sbjct: 7 KIKGTVVLMPKNELEVNPDGSAVDNLNAF---LGRSVSLQLISATKADAHGKG-KVGKDT 62
Query: 155 VLKDWSKK-SNVKAERVHYTAEFLVDSNFGTPGAITVANKHQKEFFLETITIEGFAC-GP 212
L+ + + A + F D + G PGA + N Q EFFL+++T+E + G
Sbjct: 63 FLEGINTSLPTLGAGESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGT 122
Query: 213 VHFQCNSWVQSTKDHPGKRIFFANQPYLPSETPAGLRALREKELKDIRGTGKGVRKLSDR 272
+ F CNSWV +TK + RIFFAN Y+PSETPA L RE+ELK +RG G G RK DR
Sbjct: 123 IRFVCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVEYREEELKSLRGNGTGERKEYDR 182
Query: 273 IYDYDVYNDLGNPDRGSEFVRPSLGGEQR-PYPRRCRTGRLPTDTDLLAESRIEKPLPIY 331
IYDYDVYNDLGNPD+ + RP LGG PYPRR RTGR PT TD E + E Y
Sbjct: 183 IYDYDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEV---FY 239
Query: 332 VPRDEQFEESK-QDAFSAGRLKGALHNLIPLLKASISARNH--DFSGFSDIDSLYSEXXX 388
VPRDE K +DA G K + P +++ ++ +F F D+ LY
Sbjct: 240 VPRDENLGHLKSKDALEIGT-KSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYE---- 294
Query: 389 XXXXXXXXXXXXXXXXXVVSKIQES-SQGLLKYNSPKILSRDKFAWLRDDEFARQALAGV 447
V+ ++ + Q +LK+ P ++ + AW+ D+EFAR+ +AGV
Sbjct: 295 GGIKLPRDVISTIIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGV 354
Query: 448 NPVSIERLQAFPPVSNLDPKIYGPQESALKEEHIIGQLDGMSVQQALEENKLYVLDFHDI 507
NP I L+ FPP SNLDP IYG Q S + + + LDG ++ +AL +L++LD+HDI
Sbjct: 355 NPCVIRGLEEFPPKSNLDPAIYGDQSSKITADSL--DLDGYTMDEALGSRRLFMLDYHDI 412
Query: 508 YLPFLDRINALDGRKSYATRTIFFLNSLGTLKPIAIEXXXXXXX--XXXXXKRVLTPAAD 565
++P++ +IN L+ K+YATRTI FL GTLKP+AIE +V+ PA +
Sbjct: 413 FMPYVRQINQLNSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKE 472
Query: 566 ATSNWLWQLAKAHVCSNDAGVHQLVNHW 593
+ +W LAKA+V ND+ HQL++HW
Sbjct: 473 GVESTIWLLAKAYVIVNDSCYHQLMSHW 500
>pdb|3BNB|A Chain A, Lipoxygenase-1 (Soybean) I553l Mutant
Length = 839
Score = 332 bits (852), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 199/508 (39%), Positives = 283/508 (55%), Gaps = 24/508 (4%)
Query: 96 KFKVRAVLTVRKNIKEDFKETLVNQFDALTEKIGRNVVLELV-GTEVDPRTKGPKKSREA 154
K K VL + ++ + + V+ +A +GR+V L+L+ T+ D KG K ++
Sbjct: 7 KIKGTVVLMPKNELEVNPDGSAVDNLNAF---LGRSVSLQLISATKADAHGKG-KVGKDT 62
Query: 155 VLKDWSKK-SNVKAERVHYTAEFLVDSNFGTPGAITVANKHQKEFFLETITIEGFAC-GP 212
L+ + + A + F D + G PGA + N Q EFFL+++T+E + G
Sbjct: 63 FLEGINTSLPTLGAGESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGT 122
Query: 213 VHFQCNSWVQSTKDHPGKRIFFANQPYLPSETPAGLRALREKELKDIRGTGKGVRKLSDR 272
+ F CNSWV +TK + RIFFAN Y+PSETPA L RE+ELK +RG G G RK DR
Sbjct: 123 IRFVCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVEYREEELKSLRGNGTGERKEYDR 182
Query: 273 IYDYDVYNDLGNPDRGSEFVRPSLGGEQR-PYPRRCRTGRLPTDTDLLAESRIEKPLPIY 331
IYDYDVYNDLGNPD+ + RP LGG PYPRR RTGR PT TD E + E Y
Sbjct: 183 IYDYDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEV---FY 239
Query: 332 VPRDEQFEESK-QDAFSAGRLKGALHNLIPLLKASISARNH--DFSGFSDIDSLYSEXXX 388
VPRDE K +DA G K + P +++ ++ +F F D+ LY
Sbjct: 240 VPRDENLGHLKSKDALEIGT-KSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYE---- 294
Query: 389 XXXXXXXXXXXXXXXXXVVSKIQES-SQGLLKYNSPKILSRDKFAWLRDDEFARQALAGV 447
V+ ++ + Q +LK+ P ++ + AW+ D+EFAR+ +AGV
Sbjct: 295 GGIKLPRDVISTIIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGV 354
Query: 448 NPVSIERLQAFPPVSNLDPKIYGPQESALKEEHIIGQLDGMSVQQALEENKLYVLDFHDI 507
NP I L+ FPP SNLDP IYG Q S + + + LDG ++ +AL +L++LD+HDI
Sbjct: 355 NPCVIRGLEEFPPKSNLDPAIYGDQSSKITADSL--DLDGYTMDEALGSRRLFMLDYHDI 412
Query: 508 YLPFLDRINALDGRKSYATRTIFFLNSLGTLKPIAIEXXXXXXX--XXXXXKRVLTPAAD 565
++P++ +IN L+ K+YATRTI FL GTLKP+AIE +V+ PA +
Sbjct: 413 FMPYVRQINQLNSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKE 472
Query: 566 ATSNWLWQLAKAHVCSNDAGVHQLVNHW 593
+ +W LAKA+V ND+ HQL++HW
Sbjct: 473 GVESTIWLLAKAYVIVNDSCYHQLMSHW 500
>pdb|3PZW|A Chain A, Soybean Lipoxygenase-1 - Re-Refinement
Length = 839
Score = 332 bits (851), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 199/508 (39%), Positives = 283/508 (55%), Gaps = 24/508 (4%)
Query: 96 KFKVRAVLTVRKNIKEDFKETLVNQFDALTEKIGRNVVLELV-GTEVDPRTKGPKKSREA 154
K K VL + ++ + + V+ +A +GR+V L+L+ T+ D KG K ++
Sbjct: 7 KIKGTVVLMPKNELEVNPDGSAVDNLNAF---LGRSVSLQLISATKADAHGKG-KVGKDT 62
Query: 155 VLKDWSKK-SNVKAERVHYTAEFLVDSNFGTPGAITVANKHQKEFFLETITIEGFAC-GP 212
L+ + + A + F D + G PGA + N Q EFFL+++T+E + G
Sbjct: 63 FLEGINTSLPTLGAGESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGT 122
Query: 213 VHFQCNSWVQSTKDHPGKRIFFANQPYLPSETPAGLRALREKELKDIRGTGKGVRKLSDR 272
+ F CNSWV +TK + RIFFAN Y+PSETPA L RE+ELK +RG G G RK DR
Sbjct: 123 IRFVCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVEYREEELKSLRGNGTGERKEYDR 182
Query: 273 IYDYDVYNDLGNPDRGSEFVRPSLGGEQR-PYPRRCRTGRLPTDTDLLAESRIEKPLPIY 331
IYDYDVYNDLGNPD+ + RP LGG PYPRR RTGR PT TD E + E Y
Sbjct: 183 IYDYDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEV---FY 239
Query: 332 VPRDEQFEESK-QDAFSAGRLKGALHNLIPLLKASISARNH--DFSGFSDIDSLYSEXXX 388
VPRDE K +DA G K + P +++ ++ +F F D+ LY
Sbjct: 240 VPRDENLGHLKSKDALEIGT-KSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYE---- 294
Query: 389 XXXXXXXXXXXXXXXXXVVSKIQES-SQGLLKYNSPKILSRDKFAWLRDDEFARQALAGV 447
V+ ++ + Q +LK+ P ++ + AW+ D+EFAR+ +AGV
Sbjct: 295 GGIKLPRDVISTIIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGV 354
Query: 448 NPVSIERLQAFPPVSNLDPKIYGPQESALKEEHIIGQLDGMSVQQALEENKLYVLDFHDI 507
NP I L+ FPP SNLDP IYG Q S + + + LDG ++ +AL +L++LD+HDI
Sbjct: 355 NPCVIRGLEEFPPKSNLDPAIYGDQSSKITADSL--DLDGYTMDEALGSRRLFMLDYHDI 412
Query: 508 YLPFLDRINALDGRKSYATRTIFFLNSLGTLKPIAIEXXXXXXX--XXXXXKRVLTPAAD 565
++P++ +IN L+ K+YATRTI FL GTLKP+AIE +V+ PA +
Sbjct: 413 FMPYVRQINQLNSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKE 472
Query: 566 ATSNWLWQLAKAHVCSNDAGVHQLVNHW 593
+ +W LAKA+V ND+ HQL++HW
Sbjct: 473 GVESTIWLLAKAYVIVNDSCYHQLMSHW 500
>pdb|1FGQ|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495e Mutant
Length = 839
Score = 332 bits (850), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 198/508 (38%), Positives = 284/508 (55%), Gaps = 24/508 (4%)
Query: 96 KFKVRAVLTVRKNIKEDFKETLVNQFDALTEKIGRNVVLELV-GTEVDPRTKGPKKSREA 154
K K VL + ++ + + V+ +A +GR+V L+L+ T+ D KG K ++
Sbjct: 7 KIKGTVVLMPKNELEVNPDGSAVDNLNAF---LGRSVSLQLISATKADAHGKG-KVGKDT 62
Query: 155 VLKDWSKK-SNVKAERVHYTAEFLVDSNFGTPGAITVANKHQKEFFLETITIEGFAC-GP 212
L+ + + A + F D + G PGA + N Q EFFL+++T+E + G
Sbjct: 63 FLEGINTSLPTLGAGESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGT 122
Query: 213 VHFQCNSWVQSTKDHPGKRIFFANQPYLPSETPAGLRALREKELKDIRGTGKGVRKLSDR 272
+ F CNSWV +TK + RIFFAN Y+PSETPA L + RE+ELK +RG G G RK DR
Sbjct: 123 IRFVCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYDR 182
Query: 273 IYDYDVYNDLGNPDRGSEFVRPSLGGEQR-PYPRRCRTGRLPTDTDLLAESRIEKPLPIY 331
IYDYDVYNDLGNPD+ + RP LGG PYPRR RTGR PT TD E + E Y
Sbjct: 183 IYDYDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEV---FY 239
Query: 332 VPRDEQFEESK-QDAFSAGRLKGALHNLIPLLKASISARNH--DFSGFSDIDSLYSEXXX 388
VPRDE K +DA G K + P +++ ++ +F F D+ LY
Sbjct: 240 VPRDENLGHLKSKDALEIGT-KSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYE---- 294
Query: 389 XXXXXXXXXXXXXXXXXVVSKIQES-SQGLLKYNSPKILSRDKFAWLRDDEFARQALAGV 447
V+ ++ + Q +LK+ P ++ + AW+ D+EFAR+ +AGV
Sbjct: 295 GGIKLPRDVISTIIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGV 354
Query: 448 NPVSIERLQAFPPVSNLDPKIYGPQESALKEEHIIGQLDGMSVQQALEENKLYVLDFHDI 507
NP I L+ FPP SNLDP IYG Q S + + + LDG ++ +AL +L++LD+HDI
Sbjct: 355 NPCVIRGLEEFPPKSNLDPAIYGDQSSKITADSL--DLDGYTMDEALGSRRLFMLDYHDI 412
Query: 508 YLPFLDRINALDGRKSYATRTIFFLNSLGTLKPIAIEXXXXXXX--XXXXXKRVLTPAAD 565
++P++ +IN L+ K+YATRTI FL GTLKP+AIE +V+ PA +
Sbjct: 413 FMPYVRQINQLNSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKE 472
Query: 566 ATSNWLWQLAKAHVCSNDAGVHQLVNHW 593
+ +W LAKA+V ND+ H+L++HW
Sbjct: 473 GVESTIWLLAKAYVIVNDSCYHELMSHW 500
>pdb|1ROV|A Chain A, Lipoxygenase-3 Treated With Cumene Hydroperoxide
Length = 857
Score = 331 bits (849), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 194/479 (40%), Positives = 266/479 (55%), Gaps = 14/479 (2%)
Query: 121 FDALTEKIGRNVVLELV-GTEVDPRTKGPKKSREAVLKDWSKKSNVKAERVHYTAEFLVD 179
D LT +GR+V L+L+ T+ D KG + + + A + + F D
Sbjct: 47 LDTLTAFLGRSVSLQLISATKADANGKGKLGKATFLEGIITSLPTLGAGQSAFKINFEWD 106
Query: 180 SNFGTPGAITVANKHQKEFFLETITIEGFAC-GPVHFQCNSWVQSTKDHPGKRIFFANQP 238
G PGA + N Q EFFL ++T+E G +HF CNSW+ + K RIFFANQ
Sbjct: 107 DGSGIPGAFYIKNFMQTEFFLVSLTLEDIPNHGSIHFVCNSWIYNAKLFKSDRIFFANQT 166
Query: 239 YLPSETPAGLRALREKELKDIRGTGKGVRKLSDRIYDYDVYNDLGNPDRGSEFVRPSLGG 298
YLPSETPA L RE+EL ++RG G G RK +RIYDYDVYNDLG+PD+G RP LGG
Sbjct: 167 YLPSETPAPLVKYREEELHNLRGDGTGERKEWERIYDYDVYNDLGDPDKGENHARPVLGG 226
Query: 299 EQR-PYPRRCRTGRLPTDTDLLAESRIEKPLPIYVPRDEQFEESKQDAFSAGRLKGALHN 357
PYPRR RTGR PT D +ESR +Y+PRDE F K F LK N
Sbjct: 227 NDTFPYPRRGRTGRKPTRKDPNSESRSND---VYLPRDEAFGHLKSSDFLTYGLKSVSQN 283
Query: 358 LIPLLKAS--ISARNHDFSGFSDIDSLYSEXXXXXXXXXXXXXXXXXXXXVVSKIQESSQ 415
++PLL+++ ++ +F F ++ LYS + E +
Sbjct: 284 VLPLLQSAFDLNFTPREFDSFDEVHGLYSGGIKLPTDIISKISPLPVLKEIFRTDGEQA- 342
Query: 416 GLLKYNSPKILSRDKFAWLRDDEFARQALAGVNPVSIERLQAFPPVSNLDPKIYGPQESA 475
LK+ PK++ K AW+ D+EFAR+ LAGVNP I L+ FPP S LD ++YG S
Sbjct: 343 --LKFPPPKVIQVSKSAWMTDEEFAREMLAGVNPNLIRCLKDFPPRSKLDSQVYGDHTSQ 400
Query: 476 LKEEHIIGQLDGMSVQQALEENKLYVLDFHDIYLPFLDRINALDGRKSYATRTIFFLNSL 535
+ +EH+ L+G++V +A++ +L++LD HD +P+L RINA K+YATRTI FL +
Sbjct: 401 ITKEHLEPNLEGLTVDEAIQNKRLFLLDHHDPIMPYLRRINA-TSTKAYATRTILFLKND 459
Query: 536 GTLKPIAIEXX--XXXXXXXXXXKRVLTPAADATSNWLWQLAKAHVCSNDAGVHQLVNH 592
GTL+P+AIE +V PA + + +W LAKA+V ND+ HQLV+H
Sbjct: 460 GTLRPLAIELSLPHPQGDQSGAFSQVFLPADEGVESSIWLLAKAYVVVNDSCYHQLVSH 518
>pdb|1FGO|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495a Mutant
Length = 839
Score = 330 bits (847), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 198/508 (38%), Positives = 283/508 (55%), Gaps = 24/508 (4%)
Query: 96 KFKVRAVLTVRKNIKEDFKETLVNQFDALTEKIGRNVVLELV-GTEVDPRTKGPKKSREA 154
K K VL + ++ + + V+ +A +GR+V L+L+ T+ D KG K ++
Sbjct: 7 KIKGTVVLMPKNELEVNPDGSAVDNLNAF---LGRSVSLQLISATKADAHGKG-KVGKDT 62
Query: 155 VLKDWSKK-SNVKAERVHYTAEFLVDSNFGTPGAITVANKHQKEFFLETITIEGFAC-GP 212
L+ + + A + F D + G PGA + N Q EFFL+++T+E + G
Sbjct: 63 FLEGINTSLPTLGAGESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGT 122
Query: 213 VHFQCNSWVQSTKDHPGKRIFFANQPYLPSETPAGLRALREKELKDIRGTGKGVRKLSDR 272
+ F CNSWV +TK + RIFFAN Y+PSETPA L + RE+ELK +RG G G RK DR
Sbjct: 123 IRFVCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYDR 182
Query: 273 IYDYDVYNDLGNPDRGSEFVRPSLGGEQR-PYPRRCRTGRLPTDTDLLAESRIEKPLPIY 331
IYDYDVYNDLGNPD+ + RP LGG PYPRR RTGR PT TD E + E Y
Sbjct: 183 IYDYDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEV---FY 239
Query: 332 VPRDEQFEESK-QDAFSAGRLKGALHNLIPLLKASISARNH--DFSGFSDIDSLYSEXXX 388
VPRDE K +DA G K + P +++ ++ +F F D+ LY
Sbjct: 240 VPRDENLGHLKSKDALEIGT-KSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYE---- 294
Query: 389 XXXXXXXXXXXXXXXXXVVSKIQES-SQGLLKYNSPKILSRDKFAWLRDDEFARQALAGV 447
V+ ++ + Q +LK+ P ++ + AW+ D+EFAR+ +AGV
Sbjct: 295 GGIKLPRDVISTIIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGV 354
Query: 448 NPVSIERLQAFPPVSNLDPKIYGPQESALKEEHIIGQLDGMSVQQALEENKLYVLDFHDI 507
NP I L+ FPP SNLDP IYG Q S + + + LDG ++ +AL +L++LD+HDI
Sbjct: 355 NPCVIRGLEEFPPKSNLDPAIYGDQSSKITADSL--DLDGYTMDEALGSRRLFMLDYHDI 412
Query: 508 YLPFLDRINALDGRKSYATRTIFFLNSLGTLKPIAIEXXXXXXX--XXXXXKRVLTPAAD 565
++P++ +IN L+ K+YATRTI FL GTLKP+AIE +V+ PA +
Sbjct: 413 FMPYVRQINQLNSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKE 472
Query: 566 ATSNWLWQLAKAHVCSNDAGVHQLVNHW 593
+ +W LAKA+V ND+ H L++HW
Sbjct: 473 GVESTIWLLAKAYVIVNDSCYHALMSHW 500
>pdb|2IUK|A Chain A, Crystal Structure Of Soybean Lipoxygenase-D
pdb|2IUK|B Chain B, Crystal Structure Of Soybean Lipoxygenase-D
Length = 864
Score = 327 bits (838), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 192/482 (39%), Positives = 262/482 (54%), Gaps = 19/482 (3%)
Query: 121 FDALTEKIGRNVVLELV-GTEVDPRTKGPKKSREAVL-KDWSKKSNVKAERVHYTAEFLV 178
D T +GRN+ ++L+ T+ D G K +E L K + A + ++ F
Sbjct: 55 IDTATSFLGRNISMQLISATQTDGSGNG-KVGKEVYLEKHLPTLPTLGARQDAFSIFFEW 113
Query: 179 DSNFGTPGAITVANKHQKEFFLETITIEGFAC-GPVHFQCNSWVQSTKDHPGKRIFFANQ 237
D++FG PGA + N EFFL ++ +E G + F CNSWV + + + RIFF N
Sbjct: 114 DASFGIPGAFYIKNFMTDEFFLVSVKLEDIPNHGTIEFVCNSWVYNFRSYKKNRIFFVND 173
Query: 238 PYLPSETPAGLRALREKELKDIRGTGKGVRKLSDRIYDYDVYNDLGNPDRGSEFVRPSLG 297
YLPS TPA L R++E + +RG G G RK DRIYDYDVYNDLGNPD G RP LG
Sbjct: 174 TYLPSATPAPLLKYRKEEFEVLRGDGTGKRKDFDRIYDYDVYNDLGNPDGGDP--RPILG 231
Query: 298 G-EQRPYPRRCRTGRLPTDTDLLAESRIEKPLPIYVPRDEQFEESKQDAFSAGRLKGALH 356
G PYP R RTGR T TD EKP +YVPRDE F K F +K H
Sbjct: 232 GCSIYPYPLRVRTGRERTRTD----PNSEKPGEVYVPRDENFGHLKSSDFLTYGIKSLSH 287
Query: 357 NLIPLLKASI---SARNHDFSGFSDIDSLYSEXXXXXXXXXXXXXXXXXXXXVVSKIQES 413
++IPL K++I + +F F D+ SLY + +
Sbjct: 288 DVIPLFKSAIFQLRVTSSEFESFEDVRSLYEGGIKLPTDILSQISPLPALKEI---FRTD 344
Query: 414 SQGLLKYNSPKILSRDKFAWLRDDEFARQALAGVNPVSIERLQAFPPVSNLDPKIYGPQE 473
+ +L++ P + K + D+EFAR+ +AGVNP I RLQ FPP S LDP +YG Q
Sbjct: 345 GENVLQFPPPHVAKVSKSGVMTDEEFAREVIAGVNPNVIRRLQEFPPKSTLDPTLYGDQT 404
Query: 474 SALKEEHIIGQLDGMSVQQALEENKLYVLDFHDIYLPFLDRINALDGRKSYATRTIFFLN 533
S + +E + + G++V++AL +L++LD+ D ++P+L RIN+L K+YATRTI FL
Sbjct: 405 STITKEQLEINMGGVTVEEALSTQRLFILDYQDAFIPYLTRINSLPTAKAYATRTILFLK 464
Query: 534 SLGTLKPIAIEXXXXXXXXXXXXKR--VLTPAADATSNWLWQLAKAHVCSNDAGVHQLVN 591
GTLKP+AIE V+ PA + + +W LAKAHV ND+G HQLV+
Sbjct: 465 DDGTLKPLAIELSKPHPDGDNLGPESIVVLPATEGVDSTIWLLAKAHVIVNDSGYHQLVS 524
Query: 592 HW 593
HW
Sbjct: 525 HW 526
>pdb|3DY5|A Chain A, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura
Homomalla
pdb|3DY5|C Chain C, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura
Homomalla
Length = 1066
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 73/180 (40%), Gaps = 41/180 (22%)
Query: 433 WLRDDEFARQALAGVNPVSIERLQAFP---PVSNLDPKIYGPQESALKEEHIIGQLD-GM 488
W D F Q L G NPV + R A P PV+N EH+ LD G
Sbjct: 599 WHEDRWFGYQFLNGANPVILTRCDALPSNFPVTN---------------EHVNASLDRGK 643
Query: 489 SVQQALEENKLYVLDF--------------HDIYLPFLDRI--NALDGRKSYATRTIFFL 532
++ + +++ +Y++DF DI D + + D R A +F++
Sbjct: 644 NLDEEIKDGHIYIVDFKVLVGAKSYGGPVLEDIGYKVPDHLKHDEADIRYCAAPLALFYV 703
Query: 533 NSLGTLKPIAIEXXXXXXXXXXXXKRVLTPAADATSNWLWQLAKAHVCSNDAGVHQLVNH 592
N LG L PIAI+ + TP + +W+ +AK + ++ HQL H
Sbjct: 704 NKLGHLMPIAIQ----INQEPGPENPIWTPHEENEHDWM--MAKFWLGVAESNFHQLNTH 757
>pdb|3FG3|A Chain A, Crystal Structure Of Delta413-417:gs I805w Lox
pdb|3FG3|B Chain B, Crystal Structure Of Delta413-417:gs I805w Lox
pdb|3FG3|C Chain C, Crystal Structure Of Delta413-417:gs I805w Lox
pdb|3FG3|D Chain D, Crystal Structure Of Delta413-417:gs I805w Lox
Length = 696
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 73/180 (40%), Gaps = 41/180 (22%)
Query: 433 WLRDDEFARQALAGVNPVSIERLQAFP---PVSNLDPKIYGPQESALKEEHIIGQLD-GM 488
W D F Q L G NPV + R A P PV+N EH+ LD G
Sbjct: 229 WHEDRWFGYQFLNGANPVILTRCDALPSNFPVTN---------------EHVNASLDRGK 273
Query: 489 SVQQALEENKLYVLDF--------------HDIYLPFLDRI--NALDGRKSYATRTIFFL 532
++ + +++ +Y++DF DI D + + D R A +F++
Sbjct: 274 NLDEEIKDGHIYIVDFKVLVGAKSYGGPVLEDIGYKVPDHLKHDEADIRYCAAPLALFYV 333
Query: 533 NSLGTLKPIAIEXXXXXXXXXXXXKRVLTPAADATSNWLWQLAKAHVCSNDAGVHQLVNH 592
N LG L PIAI+ + TP + +W+ +AK + ++ HQL H
Sbjct: 334 NKLGHLMPIAIQ----INQEPGPENPIWTPHEENEHDWM--MAKFWLGVAESNFHQLNTH 387
>pdb|3FG4|A Chain A, Crystal Structure Of Delta413-417:gs I805a Lox
pdb|3FG4|B Chain B, Crystal Structure Of Delta413-417:gs I805a Lox
pdb|3FG4|C Chain C, Crystal Structure Of Delta413-417:gs I805a Lox
pdb|3FG4|D Chain D, Crystal Structure Of Delta413-417:gs I805a Lox
Length = 696
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 73/180 (40%), Gaps = 41/180 (22%)
Query: 433 WLRDDEFARQALAGVNPVSIERLQAFP---PVSNLDPKIYGPQESALKEEHIIGQLD-GM 488
W D F Q L G NPV + R A P PV+N EH+ LD G
Sbjct: 229 WHEDRWFGYQFLNGANPVILTRCDALPSNFPVTN---------------EHVNASLDRGK 273
Query: 489 SVQQALEENKLYVLDF--------------HDIYLPFLDRI--NALDGRKSYATRTIFFL 532
++ + +++ +Y++DF DI D + + D R A +F++
Sbjct: 274 NLDEEIKDGHIYIVDFKVLVGAKSYGGPVLEDIGYKVPDHLKHDEADIRYCAAPLALFYV 333
Query: 533 NSLGTLKPIAIEXXXXXXXXXXXXKRVLTPAADATSNWLWQLAKAHVCSNDAGVHQLVNH 592
N LG L PIAI+ + TP + +W+ +AK + ++ HQL H
Sbjct: 334 NKLGHLMPIAIQ----INQEPGPENPIWTPHEENEHDWM--MAKFWLGVAESNFHQLNTH 387
>pdb|3FG1|A Chain A, Crystal Structure Of Delta413-417:gs Lox
pdb|3FG1|B Chain B, Crystal Structure Of Delta413-417:gs Lox
pdb|3FG1|C Chain C, Crystal Structure Of Delta413-417:gs Lox
pdb|3FG1|D Chain D, Crystal Structure Of Delta413-417:gs Lox
Length = 696
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 73/180 (40%), Gaps = 41/180 (22%)
Query: 433 WLRDDEFARQALAGVNPVSIERLQAFP---PVSNLDPKIYGPQESALKEEHIIGQLD-GM 488
W D F Q L G NPV + R A P PV+N EH+ LD G
Sbjct: 229 WHEDRWFGYQFLNGANPVILTRCDALPSNFPVTN---------------EHVNASLDRGK 273
Query: 489 SVQQALEENKLYVLDF--------------HDIYLPFLDRI--NALDGRKSYATRTIFFL 532
++ + +++ +Y++DF DI D + + D R A +F++
Sbjct: 274 NLDEEIKDGHIYIVDFKVLVGAKSYGGPVLEDIGYKVPDHLKHDEADIRYCAAPLALFYV 333
Query: 533 NSLGTLKPIAIEXXXXXXXXXXXXKRVLTPAADATSNWLWQLAKAHVCSNDAGVHQLVNH 592
N LG L PIAI+ + TP + +W+ +AK + ++ HQL H
Sbjct: 334 NKLGHLMPIAIQ----INQEPGPENPIWTPHEENEHDWM--MAKFWLGVAESNFHQLNTH 387
>pdb|2FNQ|A Chain A, Insights From The X-Ray Crystal Structure Of Coral 8r-
Lipoxygenase: Calcium Activation Via A C2-Like Domain
And A Structural Basis Of Product Chirality
pdb|2FNQ|B Chain B, Insights From The X-Ray Crystal Structure Of Coral 8r-
Lipoxygenase: Calcium Activation Via A C2-Like Domain
And A Structural Basis Of Product Chirality
Length = 699
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 73/180 (40%), Gaps = 41/180 (22%)
Query: 433 WLRDDEFARQALAGVNPVSIERLQAFP---PVSNLDPKIYGPQESALKEEHIIGQLD-GM 488
W D F Q L G NPV + R A P PV+N EH+ LD G
Sbjct: 232 WHEDRWFGYQFLNGANPVILTRCDALPSNFPVTN---------------EHVNASLDRGK 276
Query: 489 SVQQALEENKLYVLDF--------------HDIYLPFLDRI--NALDGRKSYATRTIFFL 532
++ + +++ +Y++DF DI D + + D R A +F++
Sbjct: 277 NLDEEIKDGHIYIVDFKVLVGAKSYGGPVLEDIGYKVPDHLKHDEADIRYCAAPLALFYV 336
Query: 533 NSLGTLKPIAIEXXXXXXXXXXXXKRVLTPAADATSNWLWQLAKAHVCSNDAGVHQLVNH 592
N LG L PIAI+ + TP + +W+ +AK + ++ HQL H
Sbjct: 337 NKLGHLMPIAIQ----INQEPGPENPIWTPHEENEHDWM--MAKFWLGVAESNFHQLNTH 390
>pdb|3VF1|A Chain A, Structure Of A Calcium-Dependent 11r-Lipoxygenase Suggests
A Mechanism For Ca-Regulation
pdb|3VF1|B Chain B, Structure Of A Calcium-Dependent 11r-Lipoxygenase Suggests
A Mechanism For Ca-Regulation
Length = 698
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 68/165 (41%), Gaps = 28/165 (16%)
Query: 433 WLRDDEFARQALAGVNPVSIERLQAFPPVSNLDPKIYGPQESALKEEHIIGQLD-GMSVQ 491
W D F Q L G NP I R P + +K E + LD G +++
Sbjct: 251 WRDDVWFGSQFLNGSNPEVIRRCDKLP------------ENFPVKNEMVEKLLDRGYTLE 298
Query: 492 QALEENKLYVLDFHDIYLPFLDRINALDG--RKSYATR--TIFFLNSLGTLKPIAIEXXX 547
+A++E +++ D+ L+ I +D K Y T +F+L + + PIAI+
Sbjct: 299 KAMKEGLIFITDYK-----ILEGIPTMDTPEDKRYITTPLGLFYLKNNDDIIPIAIQLYQ 353
Query: 548 XXXXXXXXXKRVLTPAADATSNWLWQLAKAHVCSNDAGVHQLVNH 592
+ TP D + W W +AK + D HQ++ H
Sbjct: 354 QPGEN----NSIWTPLKD--TEWDWIMAKLWLRCADTQYHQMITH 392
>pdb|3V92|B Chain B, S663a Stable-5-Lox
pdb|3V92|A Chain A, S663a Stable-5-Lox
Length = 691
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 71/168 (42%), Gaps = 34/168 (20%)
Query: 433 WLRDDEFARQALAGVNPVSIERLQAFPPVSNLDPKIYGPQESALKEEHIIGQLDGMSVQQ 492
W D F Q L G NPV I R P + ++ E +L+ + +S++Q
Sbjct: 244 WQEDLMFGYQFLNGANPVLIRRCTELPEKLPVTTEMV---ECSLERQ--------LSLEQ 292
Query: 493 ALEENKLYVLDFHDIYLPFLDRINALDGRKS--------YATRTIFFLNSLGTLKPIAIE 544
+++ ++++DF + ++ +D K+ A + + N + PIAI+
Sbjct: 293 EVQQGNIFIVDF--------ELLDGIDANKTDPCTLQFLAAPICLLYKNLANKIVPIAIQ 344
Query: 545 XXXXXXXXXXXXKRVLTPAADATSNWLWQLAKAHVCSNDAGVHQLVNH 592
+ P+ DA +WL LAK V S+D VHQ + H
Sbjct: 345 LNQIPGDE----NPIFLPS-DAKYDWL--LAKIWVRSSDFHVHQTITH 385
>pdb|3O8Y|A Chain A, Stable-5-Lipoxygenase
pdb|3O8Y|B Chain B, Stable-5-Lipoxygenase
Length = 691
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 71/168 (42%), Gaps = 34/168 (20%)
Query: 433 WLRDDEFARQALAGVNPVSIERLQAFPPVSNLDPKIYGPQESALKEEHIIGQLDGMSVQQ 492
W D F Q L G NPV I R P + ++ E +L+ + +S++Q
Sbjct: 244 WQEDLMFGYQFLNGANPVLIRRCTELPEKLPVTTEMV---ECSLERQ--------LSLEQ 292
Query: 493 ALEENKLYVLDFHDIYLPFLDRINALDGRKS--------YATRTIFFLNSLGTLKPIAIE 544
+++ ++++DF + ++ +D K+ A + + N + PIAI+
Sbjct: 293 EVQQGNIFIVDF--------ELLDGIDANKTDPCTLQFLAAPICLLYKNLANKIVPIAIQ 344
Query: 545 XXXXXXXXXXXXKRVLTPAADATSNWLWQLAKAHVCSNDAGVHQLVNH 592
+ P+ DA +WL LAK V S+D VHQ + H
Sbjct: 345 LNQIPGDE----NPIFLPS-DAKYDWL--LAKIWVRSSDFHVHQTITH 385
>pdb|3V98|A Chain A, S663d Stable-5-Lox
pdb|3V98|B Chain B, S663d Stable-5-Lox
pdb|3V99|A Chain A, S663d Stable-5-Lox In Complex With Arachidonic Acid
pdb|3V99|B Chain B, S663d Stable-5-Lox In Complex With Arachidonic Acid
Length = 691
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 71/168 (42%), Gaps = 34/168 (20%)
Query: 433 WLRDDEFARQALAGVNPVSIERLQAFPPVSNLDPKIYGPQESALKEEHIIGQLDGMSVQQ 492
W D F Q L G NPV I R P + ++ E +L+ + +S++Q
Sbjct: 244 WQEDLMFGYQFLNGANPVLIRRCTELPEKLPVTTEMV---ECSLERQ--------LSLEQ 292
Query: 493 ALEENKLYVLDFHDIYLPFLDRINALDGRKS--------YATRTIFFLNSLGTLKPIAIE 544
+++ ++++DF + ++ +D K+ A + + N + PIAI+
Sbjct: 293 EVQQGNIFIVDF--------ELLDGIDANKTDPCTLQFLAAPICLLYKNLANKIVPIAIQ 344
Query: 545 XXXXXXXXXXXXKRVLTPAADATSNWLWQLAKAHVCSNDAGVHQLVNH 592
+ P+ DA +WL LAK V S+D VHQ + H
Sbjct: 345 LNQIPGDE----NPIFLPS-DAKYDWL--LAKIWVRSSDFHVHQTITH 385
>pdb|3D3L|A Chain A, The 2.6 A Crystal Structure Of The Lipoxygenase Domain Of
Human Arachidonate 12-Lipoxygenase, 12s-Type (Casp
Target)
pdb|3D3L|B Chain B, The 2.6 A Crystal Structure Of The Lipoxygenase Domain Of
Human Arachidonate 12-Lipoxygenase, 12s-Type (Casp
Target)
Length = 541
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 65/165 (39%), Gaps = 29/165 (17%)
Query: 432 AWLRDDEFARQALAGVNPVSIERLQAFPPVSNLDPKIYGPQESALKEEHIIGQLDGMSVQ 491
W D+ F+ Q L G NP+ + R + P L + E + QL+
Sbjct: 67 CWQDDELFSYQFLNGANPMLLRRSTSLPSRLVLPSGM----------EELRAQLE----- 111
Query: 492 QALEENKLYVLDFHDIYLPFLDRI--NALDGRKSY--ATRTIFFLNSLGTLKPIAIEXXX 547
+ L+ L+ DF LD I N + G K Y A + + G L+P+ I+
Sbjct: 112 KELQNGSLFEADFI-----LLDGIPANVIRGEKQYLAAPLVMLKMEPNGKLQPMVIQIQP 166
Query: 548 XXXXXXXXXKRVLTPAADATSNWLWQLAKAHVCSNDAGVHQLVNH 592
L +D WL LAK+ V ++D +H++ H
Sbjct: 167 PNPSSP---TPTLFLPSDPPLAWL--LAKSWVRNSDFQLHEIQYH 206
>pdb|3IVD|A Chain A, Putative 5'-Nucleotidase (C4898) From Escherichia Coli In
Complex With Uridine
pdb|3IVD|B Chain B, Putative 5'-Nucleotidase (C4898) From Escherichia Coli In
Complex With Uridine
pdb|3IVE|A Chain A, Putative 5'-Nucleotidase (C4898) From Escherichia Coli In
Complex With Cytidine
Length = 509
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 56/160 (35%), Gaps = 14/160 (8%)
Query: 34 WQNKLLQQKQFLVPVQQRRVHSRKAGAAGVRRGINNPVAALSEDLVK-GAASSAVPGAAE 92
W N LLQ Q P+ Q + + + + + P + +D VK G A
Sbjct: 100 WDNTLLQLSQAKFPIVQGNIFYQNSS----KSFWDKPYTIIEKDGVKIGVIGLHGVFAFN 155
Query: 93 KPVKFKVRAVLTVRKNIKEDFKETLVNQFDALTEKIGRNVVLELVGTEVDPRTKGPKKSR 152
V R + R IK L D L K+ V L G + G R
Sbjct: 156 DTVSAATRVGIEARDEIK-----WLQRYIDELKGKVDLTVALIHEGVPARQSSXGGTDVR 210
Query: 153 EAVLKDWSKKSNVKAERVHYTAEFLVDSNFGTPGAITVAN 192
A+ KD S VK + T ++ GTP I V N
Sbjct: 211 RALDKDIQTASQVKGLDILITGH----AHVGTPEPIKVGN 246
>pdb|1QAV|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 90
Score = 29.3 bits (64), Expect = 5.9, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 13/93 (13%)
Query: 48 VQQRRVHSRKAGAAG----VRRGINNPVAALSEDLVKGAASSAVPGAAEKPVKFKVRAVL 103
+Q+RRV RKA A G ++ G N + L + KG A A + F A+L
Sbjct: 3 LQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLA------ADQTEALFVGDAIL 56
Query: 104 TVRKNIKEDFKETLVNQFDALTEKIGRNVVLEL 136
+V ED ++ +K G+ VVLE+
Sbjct: 57 SVN---GEDLSSATHDEAVQALKKTGKEVVLEV 86
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 112 DFKETLVNQFDALTEKIGRNVVLELVGTEVDPRTKGPKKSREAVLKDWSKKSNVKAERVH 171
DF+ L +LTE+ + E G + T KK EA + K N+ A R+H
Sbjct: 206 DFERILTEPHASLTEQYKALMATE--GVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLH 263
Query: 172 YTAEFLVD 179
E L+D
Sbjct: 264 TVMERLMD 271
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,300,713
Number of Sequences: 62578
Number of extensions: 665905
Number of successful extensions: 1541
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1437
Number of HSP's gapped (non-prelim): 38
length of query: 593
length of database: 14,973,337
effective HSP length: 104
effective length of query: 489
effective length of database: 8,465,225
effective search space: 4139495025
effective search space used: 4139495025
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)