RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 007689
(593 letters)
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel,
FAB complex, membrane protein; 2.51A {Escherichia coli}
SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A
2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A
2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Length = 465
Score = 260 bits (665), Expect = 2e-80
Identities = 83/320 (25%), Positives = 137/320 (42%), Gaps = 15/320 (4%)
Query: 33 IKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFS-LMMENNRERKIALVAAGAASGIASG 91
+K TLG G LG EGP+V IG + + E + L+A GAA+G+A+
Sbjct: 130 VKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLDIFRLKGDEARHTLLATGAAAGLAAA 189
Query: 92 FNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDL 151
FNA +AG F IE + R + + + ++S+ + + + V
Sbjct: 190 FNAPLAGILFIIEEMRPQFRY---TLISIKAVFIGVIMSTIMYRIFNHEVALIDVGKLSD 246
Query: 152 KSAAELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIA 211
L LYLILG++ G+ +F + V + V+ G G++
Sbjct: 247 APLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLG 306
Query: 212 LRYPGILYWGFTNVEEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSL 271
P GF + + +L + A+V+ T LC SG GG++AP L
Sbjct: 307 FVAPATSGGGFNLIPIATA-----GNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPML 361
Query: 272 MIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFEL 331
+G +G FG + P E +A+ GM A LA+ PLT ++L+ E+
Sbjct: 362 ALGTVLGTAFG----MVAVELFPQ--YHLEAGTFAIAGMGALLAASIRAPLTGIILVLEM 415
Query: 332 TRDYRILLPLMGAVGLAIWV 351
T +Y+++LP++ A +
Sbjct: 416 TDNYQLILPMIITGLGATLL 435
Score = 63.6 bits (155), Expect = 7e-11
Identities = 40/198 (20%), Positives = 68/198 (34%), Gaps = 24/198 (12%)
Query: 161 LILGMLCGVVSVVFTRLVAWFTKSFDFIKEKF-------GLPPVVCPALGGLGAGIIALR 213
++G L G+ +V F + VAW +C A+ + + +
Sbjct: 40 AVVGTLVGLAAVAFDKGVAWLQNQRMGALVHTADNYPLLLTVAFLCSAVLAMFGYFLVRK 99
Query: 214 Y-PGILYWGFTNVEEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLM 272
Y P G +E L + P W ++ K G G+V G P++
Sbjct: 100 YAPEAGGSGIPEIEGALEDQR----PVRWW--RVLPVKFFGGLGTLGGGMVLGREGPTVQ 153
Query: 273 IGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFE-L 331
IG +G + I G AA LA+ + PL +L + E +
Sbjct: 154 IGGNIGRMVLD---------IFRLKGDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEM 204
Query: 332 TRDYRILLPLMGAVGLAI 349
+R L + AV + +
Sbjct: 205 RPQFRYTLISIKAVFIGV 222
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog,
transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Length = 466
Score = 259 bits (664), Expect = 3e-80
Identities = 80/319 (25%), Positives = 142/319 (44%), Gaps = 17/319 (5%)
Query: 33 IKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIALVAAGAASGIASGF 92
IK + ++LG G G EGP++ +G S + +E + L+A GA +G+A+ F
Sbjct: 126 IKLVGGFLSLGAGMLAGFEGPTIQMGGSIGQMTGGWFKATQENQRILIAVGAGAGLATAF 185
Query: 93 NAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLK 152
NA +AG E + R++ + ++ V+++ + ++ G + ++ +
Sbjct: 186 NAPLAGVALIGEEMHPRFRSQTLAYHS---LLFGCVMATIILRMIRGQSAIISLTEFKRV 242
Query: 153 SAAELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIAL 212
L +++ILG+L GV+ F R + FD + L L G GI++L
Sbjct: 243 PLDSLWMFIILGILFGVMGYTFNRGLFKVLDWFDRLP---PLATKWKGFLLGSIIGILSL 299
Query: 213 RYPGILYWGFTNVEEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLM 272
+ G V + S L + + + T +C GSG +GG++AP L
Sbjct: 300 FPLPLTDGGDNAVLWAFN-----SQSHFSTLILVFCGRFLLTLICYGSGAIGGIFAPMLG 354
Query: 273 IGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELT 332
I + V + + EP A+ GM A +A+ PLT++LL E+T
Sbjct: 355 IASIVSVAMARHFHLL------FPSQIPEPAVMAIAGMGALVAATVRAPLTAILLTIEMT 408
Query: 333 RDYRILLPLMGAVGLAIWV 351
+Y ++LPL+ +A V
Sbjct: 409 DNYFVILPLLVTCLVASVV 427
Score = 67.8 bits (166), Expect = 3e-12
Identities = 36/206 (17%), Positives = 74/206 (35%), Gaps = 29/206 (14%)
Query: 159 LYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFG--------LPPVVCPALGGLGAGII 210
+++G++ GV+ F V + + + + ++ + L ++
Sbjct: 34 AAIVVGLITGVLGAGFKSAVNNMLQWRSQLAQILAPIPPLAWLVTALISGGMVALSFWLM 93
Query: 211 ALRYPGILYWGFTNVEEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPS 270
P G +E L P +W ++ K+V L G+G++ G P+
Sbjct: 94 KRFAPDTSGSGIPQIEGHLEGKL----PLVWQ--RVLPIKLVGGFLSLGAGMLAGFEGPT 147
Query: 271 LMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFE 330
+ +G ++G + GG + VG A LA+ + PL V L+ E
Sbjct: 148 IQMGGSIGQMTGGWF----------KATQENQRILIAVGAGAGLATAFNAPLAGVALIGE 197
Query: 331 -LTRDYR----ILLPLMGAVGLAIWV 351
+ +R L+ +A +
Sbjct: 198 EMHPRFRSQTLAYHSLLFGCVMATII 223
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon
merolae}
Length = 632
Score = 213 bits (545), Expect = 2e-61
Identities = 96/464 (20%), Positives = 168/464 (36%), Gaps = 68/464 (14%)
Query: 33 IKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMME-----NNRERKIALVAAGAASG 87
KA+ +G G +G EGP+V I A+ F + +R ++ +AA A G
Sbjct: 107 AKALGLICAIGGGLPVGWEGPNVHIACIIAHQFYRLGVFKELCTDRALRLQTLAAACAVG 166
Query: 88 IASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQS--AFT 145
+AS F A + G ++IET+ +L+++ + V +L T AF
Sbjct: 167 LASSFGAPLGGVLYSIETIAS-----FYLVQAFWKGVLSALSGAIVYELLYTTPLVEAFE 221
Query: 146 VPSYDLK--SAAELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALG 203
++D S + LY ILG L GV+ +F R V + + G +
Sbjct: 222 GTNFDASDVSRTQTLLYAILGALMGVLGALFIRCVRSIYELRM--RHYPGTNRYFLVGVV 279
Query: 204 GLGAGIIALRYPGILYWGFTNVEEILHTGKTASAPGIWLLTQLAAA---KVVATALCKGS 260
L A + + L + T+L K + AL G
Sbjct: 280 ALFASALQY-PFRLFALDPRATINDLFKAVPLYQTDHFGWTELILMPIIKFILVALSIGL 338
Query: 261 GLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSV 320
L G++ PS +IGA G ++G E++ + P +YA+VG AA A V +
Sbjct: 339 PLPAGVFVPSFLIGAGFGRLYG----ELMRVVFGNAI---VPGSYAVVGAAAFTAGV-TR 390
Query: 321 PLTSVLLLFELTRDYRILLPLMGAVGLAIWVPSVANQAKETDASDKRTLARG-YSSLSPM 379
L+ +++FE+T R L+P++ +V LA+ V R Y +L
Sbjct: 391 ALSCAVIIFEVTGQIRHLVPVLISVLLAVIVG--------------NAFNRSLYETL--- 433
Query: 380 EDKNEVLWRRTDGADELELSVVENAADSEAAEEMLLEELKVSRAMS--KDFVKVALTVTL 437
+ + + E+ M + +
Sbjct: 434 ------VLMK--HLPYM-----------PILRRDRSPEMTAREIMHPIEGEPHLFPDSEP 474
Query: 438 KEAIESM-KDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSD 480
+ + K + V++ +L G ++ +I L + D
Sbjct: 475 QHIKGILEKFPNRLVFPVIDANGYLLGAISRKEIVDRLQHVLED 518
Score = 49.4 bits (118), Expect = 3e-06
Identities = 21/128 (16%), Positives = 33/128 (25%), Gaps = 8/128 (6%)
Query: 161 LILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPP-----VVCPALGGLGAGIIALRY- 214
+LG+ + V + I G VV L +
Sbjct: 15 TLLGVTAALFIFAVDLAVHGLEELRMKISRLAGRFAGYILYVVSGVALCLLSTFWCAVLS 74
Query: 215 PGILYWGFTNVEEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIG 274
G ++ IL + L AK + G GL G P++ I
Sbjct: 75 TEAEGSGLPQMKSILSGFYDKMRSALELRV--LFAKALGLICAIGGGLPVGWEGPNVHIA 132
Query: 275 AAVGAVFG 282
+ F
Sbjct: 133 CIIAHQFY 140
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown
function; HET: ADP AMP; 2.10A {Methanocaldococcus
jannaschii} PDB: 3lfz_A*
Length = 280
Score = 76.3 bits (188), Expect = 1e-15
Identities = 26/139 (18%), Positives = 49/139 (35%), Gaps = 10/139 (7%)
Query: 408 EAAEEMLLEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTY 467
A + + E + +++D + LK+ +M + VV+ E L GI+T
Sbjct: 138 RALLDKIDENEVIDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVVS-EGRLVGIITS 196
Query: 468 GDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKE 527
D + L + N ++ + I R + +T L E
Sbjct: 197 TDFIKLLGSDWAFNHMQTGNVREITNVRMEEIMKRDV---------ITAKEGDKLKKIAE 247
Query: 528 LMEAKGIKQLPVIKRSREL 546
+M I LPV+ + +
Sbjct: 248 IMVTNDIGALPVVDENLRI 266
Score = 66.7 bits (163), Expect = 2e-12
Identities = 29/163 (17%), Positives = 65/163 (39%), Gaps = 21/163 (12%)
Query: 419 KVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVN-GEDFLEGILTYGDIKRCLSKL 477
+ A +K V V T T+++A+ +M + + + VVN G + + GI+T DI +
Sbjct: 5 VMKIAQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGG 64
Query: 478 SSDNSKGDSIASDVNTCL---VSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGI 534
S N + + + V I ++T + D+ A E K +
Sbjct: 65 SKYNLIREKHERNFLAAINEPVREIME---------ENVITLKENADIDEAIETFLTKNV 115
Query: 535 KQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLREEVNHRKSV 577
P++ +L ++++ + L ++++ + +
Sbjct: 116 GGAPIVNDENQL--------ISLITERDVIRALLDKIDENEVI 150
Score = 64.0 bits (156), Expect = 2e-11
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 21/135 (15%)
Query: 406 DSEAAEEMLLEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGIL 465
+ + V M ++ + + + EAIE+ +VN E+ L ++
Sbjct: 72 EKHERNFLAAINEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLI 131
Query: 466 TYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIA 525
T D+ R L +N + TR + + P L
Sbjct: 132 TERDVIRALLDKIDENEV------------IDDYITRDV---------IVATPGERLKDV 170
Query: 526 KELMEAKGIKQLPVI 540
M G ++LPV+
Sbjct: 171 ARTMVRNGFRRLPVV 185
Score = 45.5 bits (108), Expect = 2e-05
Identities = 12/70 (17%), Positives = 28/70 (40%)
Query: 406 DSEAAEEMLLEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGIL 465
+ + +++ M +D + LK+ E M + VV+ ++GI+
Sbjct: 211 HMQTGNVREITNVRMEEIMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGII 270
Query: 466 TYGDIKRCLS 475
T D+ + +
Sbjct: 271 TEKDVLKYFA 280
>3ddj_A CBS domain-containing protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP:
d.37.1.1 d.37.1.1
Length = 296
Score = 76.0 bits (187), Expect = 3e-15
Identities = 24/139 (17%), Positives = 51/139 (36%), Gaps = 12/139 (8%)
Query: 408 EAAEEMLLEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTY 467
E + + + + M K+ ++ L A + + +G ++V N + +EG+LT
Sbjct: 10 HHHENLYFQGMNIETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVANEK--IEGLLTT 67
Query: 468 GDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKE 527
D+ + D+ + T + T +T Y +D A
Sbjct: 68 RDLLSTVESYCKDSCSQGDLYHISTT-PIIDYMT---------PNPVTVYNTSDEFTAIN 117
Query: 528 LMEAKGIKQLPVIKRSREL 546
+M + LPV+ + +
Sbjct: 118 IMVTRNFGSLPVVDINDKP 136
Score = 73.3 bits (180), Expect = 2e-14
Identities = 22/141 (15%), Positives = 47/141 (33%), Gaps = 14/141 (9%)
Query: 406 DSEAAEEMLLEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGIL 465
+ + L E V MS + V L +A++ M + V++ ++ + GI+
Sbjct: 144 EFLLLYKDLDEIFPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIV 203
Query: 466 TYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIA 525
T + + L+K +V + + +T + A
Sbjct: 204 TVVNAIKQLAKAVDKLDPDYFYGK-----VVKDVMVTNL---------VTIDELASVNRA 249
Query: 526 KELMEAKGIKQLPVIKRSREL 546
M K I L ++ + +
Sbjct: 250 AAEMIVKRIGSLLILNKDNTI 270
Score = 69.0 bits (169), Expect = 6e-13
Identities = 26/141 (18%), Positives = 45/141 (31%), Gaps = 22/141 (15%)
Query: 406 DSEAAEEMLLEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGIL 465
+ + + M+ + V V T AI M + VV+ D GI+
Sbjct: 81 SCSQGDLYHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIV 140
Query: 466 TYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIA 525
T + L +++ V T Y + L A
Sbjct: 141 TEREFLLLYKDLDEIFPVKVFMSTKV----------------------QTIYKEVRLDQA 178
Query: 526 KELMEAKGIKQLPVIKRSREL 546
+LM +G ++LPVI ++
Sbjct: 179 VKLMLRRGFRRLPVIDDDNKV 199
Score = 48.2 bits (115), Expect = 3e-06
Identities = 13/84 (15%), Positives = 31/84 (36%)
Query: 404 AADSEAAEEMLLEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEG 463
A + + V M + V + ++ A M + +L++N ++ + G
Sbjct: 213 AKAVDKLDPDYFYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRG 272
Query: 464 ILTYGDIKRCLSKLSSDNSKGDSI 487
I+T D+ L + + +
Sbjct: 273 IITERDLLIALHHILVMEKFKEKL 296
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics,
NPPSFA, national project on structural and functional
analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Length = 133
Score = 71.1 bits (175), Expect = 5e-15
Identities = 31/132 (23%), Positives = 47/132 (35%), Gaps = 22/132 (16%)
Query: 415 LEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 474
+EE V M + V L + + M + V+VV+G GI+T DI + +
Sbjct: 1 MEEEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNK-PVGIITERDIVKAI 59
Query: 475 SKLSSDNSKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGI 534
K S +K T L+T D+ + A LM I
Sbjct: 60 GKGKSLETK------------AEEFMTAS---------LITIREDSPITGALALMRQFNI 98
Query: 535 KQLPVIKRSREL 546
+ LPV+ L
Sbjct: 99 RHLPVVDDKGNL 110
Score = 45.3 bits (108), Expect = 5e-06
Identities = 13/61 (21%), Positives = 27/61 (44%)
Query: 417 ELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 476
E K M+ + + + A+ M+ + VV+ + L+GI++ DI R +
Sbjct: 66 ETKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDD 125
Query: 477 L 477
+
Sbjct: 126 M 126
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein
structure initiative; 1.40A {Methanothermobacter
thermautotrophicusdelta H} SCOP: d.37.1.1
Length = 125
Score = 69.1 bits (170), Expect = 2e-14
Identities = 22/124 (17%), Positives = 46/124 (37%), Gaps = 21/124 (16%)
Query: 418 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKL 477
++V M D + +T +L++ + + + + +VV GI+T D+ +++
Sbjct: 1 MRVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVKEGV-RVGIVTTWDVLEAIAE- 58
Query: 478 SSDNSKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQL 537
D+ V + R L+T P + A E M + +L
Sbjct: 59 ----------GDDLAEVKVWEVMERD---------LVTISPRATIKEAAEKMVKNVVWRL 99
Query: 538 PVIK 541
V +
Sbjct: 100 LVEE 103
Score = 39.8 bits (94), Expect = 3e-04
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 410 AEEMLLEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGD 469
AE L E+KV M +D V ++ T+KEA E M +LV ++ + G+++ D
Sbjct: 57 AEGDDLAEVKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEEDDE-IIGVISATD 115
Query: 470 IKRCL 474
I R
Sbjct: 116 ILRAK 120
Score = 28.2 bits (64), Expect = 3.2
Identities = 4/34 (11%), Positives = 6/34 (17%)
Query: 511 RGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSR 544
+ T L V+K
Sbjct: 9 TDVDTIDITASLEDVLRNYVENAKGSSVVVKEGV 42
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central
glycolytic G regulator, transcription; 1.95A {Bacillus
subtilis} PDB: 3fwr_A* 3fws_A*
Length = 159
Score = 68.5 bits (168), Expect = 7e-14
Identities = 28/127 (22%), Positives = 50/127 (39%), Gaps = 19/127 (14%)
Query: 415 LEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 474
L++L+V S V + V++ +AI +M + VV+ + L G+L+ D+ R
Sbjct: 14 LKKLQVKDFQSIP-VVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRAS 72
Query: 475 SKLSSDNSKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGI 534
++ + V I T R + C + + + + K I
Sbjct: 73 IG-----------QQELTSVPVHIIMT-------RMPNITVCRREDYVMDIAKHLIEKQI 114
Query: 535 KQLPVIK 541
LPVIK
Sbjct: 115 DALPVIK 121
Score = 37.7 bits (88), Expect = 0.003
Identities = 11/77 (14%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Query: 409 AAEEMLLEELKVSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDF---LEG 463
+ + L + V M++ + + + + + + Q + + V+ D + G
Sbjct: 72 SIGQQELTSVPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIG 131
Query: 464 ILTYGDIKRCLSKLSSD 480
+T ++ + L LS +
Sbjct: 132 RVTKTNMTKILVSLSEN 148
Score = 27.7 bits (62), Expect = 7.0
Identities = 6/32 (18%), Positives = 12/32 (37%)
Query: 515 TCYPDTDLAIAKELMEAKGIKQLPVIKRSREL 546
+ + + A M + + L V+ R L
Sbjct: 28 VIHENVSVYDAICTMFLEDVGTLFVVDRDAVL 59
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A
{Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Length = 133
Score = 67.6 bits (166), Expect = 1e-13
Identities = 23/131 (17%), Positives = 42/131 (32%), Gaps = 21/131 (16%)
Query: 415 LEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDI-KRC 473
M+ V TL A + M++ + + +D L G+LT DI +
Sbjct: 5 FTMTTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKG 64
Query: 474 LSKLSSDNSKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKG 533
L+ D NT + + + + +ME
Sbjct: 65 LAA-----------GLDPNTATAGELAR---------DSIYYVDANASIQEMLNVMEEHQ 104
Query: 534 IKQLPVIKRSR 544
++++PVI R
Sbjct: 105 VRRVPVISEHR 115
Score = 40.6 bits (96), Expect = 2e-04
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Query: 409 AAEEMLLEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYG 468
A + V +++E + M++ Q V V++ L GI+T
Sbjct: 65 LAAGLDPNTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVISEHR-LVGIVTEA 123
Query: 469 DIKRCLSK 476
DI R L +
Sbjct: 124 DIARHLPE 131
Score = 29.0 bits (66), Expect = 2.0
Identities = 9/57 (15%), Positives = 12/57 (21%), Gaps = 9/57 (15%)
Query: 490 DVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSREL 546
I G+ L A + M I LP+ L
Sbjct: 4 PFTMTTARDIMNAGV---------TCVGEHETLTAAAQYMREHDIGALPICGDDDRL 51
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for
structural genomics, secsg; 2.59A {Methanocaldococcus
jannaschii dsm 2661ORGANISM_TAXID}
Length = 138
Score = 67.3 bits (165), Expect = 1e-13
Identities = 29/137 (21%), Positives = 57/137 (41%), Gaps = 25/137 (18%)
Query: 415 LEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 474
L+ +KV M+K+ + + EA E M + + + V++ E+ + GI+T DI L
Sbjct: 5 LKNIKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNL 64
Query: 475 SKLSSDNSKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKG- 533
+ + + T + ++T + D + A + M+ G
Sbjct: 65 IRDKYTLET-----------TIGDVMT---------KDVITIHEDASILEAIKKMDISGK 104
Query: 534 ----IKQLPVIKRSREL 546
I QLPV+ ++ +L
Sbjct: 105 KEEIINQLPVVDKNNKL 121
Score = 43.8 bits (104), Expect = 2e-05
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 408 EAAEEMLLEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQ-----NCVLVVNGEDFLE 462
+ E + M+KD + + ++ EAI+ M + N + VV+ + L
Sbjct: 63 NLIRDKYTLETTIGDVMTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLV 122
Query: 463 GILTYGDIKRCLSKL 477
GI++ GDI R +SK+
Sbjct: 123 GIISDGDIIRTISKI 137
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS
domain, PSI, protein structure initiative; 1.50A
{Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1
g.41.13.1 PDB: 2qh1_A
Length = 184
Score = 68.2 bits (167), Expect = 2e-13
Identities = 18/129 (13%), Positives = 47/129 (36%), Gaps = 19/129 (14%)
Query: 418 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKL 477
++V + M+ +F V T+ +A++ M + ++V + G+L+ I + +
Sbjct: 9 MRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIK---RF 65
Query: 478 SSDNSKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQL 537
N K D + + + + + D D+ + G+++
Sbjct: 66 IPRNKKPDEV-------PIRLVMR---------KPIPKVKSDYDVKDVAAYLSENGLERC 109
Query: 538 PVIKRSREL 546
V+ +
Sbjct: 110 AVVDDPGRV 118
Score = 53.2 bits (128), Expect = 2e-08
Identities = 22/120 (18%), Positives = 40/120 (33%), Gaps = 3/120 (2%)
Query: 409 AAEEMLLEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYG 468
+E+ + M K KV +K+ + + VV+ + GI+T
Sbjct: 66 IPRNKKPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLT 125
Query: 469 DIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISYRGRER-GLLTCYPDTDLAIAKE 527
D+ R LS+ S + D C G+ G + + ++ A E
Sbjct: 126 DLSRYLSRASITDILLSHRTKDYQHLCP--KCGVGVLEPVYNEKGEIKVFRCSNPACDYE 183
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics,
unknown function, PSI-2, protein struct initiative;
1.90A {Vibrio cholerae} SCOP: d.37.1.1
Length = 160
Score = 66.6 bits (163), Expect = 4e-13
Identities = 25/124 (20%), Positives = 48/124 (38%), Gaps = 12/124 (9%)
Query: 418 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKL 477
+KV M++ + T TL +A M+ V +V+ L GI++ D+
Sbjct: 5 IKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESS 64
Query: 478 SSDNSKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQL 537
+++GDS+A + + + + + P L + M+ I L
Sbjct: 65 LQRSAQGDSLAFET---PLFEVMH---------TDVTSVAPQAGLKESAIYMQKHKIGCL 112
Query: 538 PVIK 541
PV+
Sbjct: 113 PVVA 116
Score = 47.3 bits (113), Expect = 1e-06
Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 1/93 (1%)
Query: 398 LSVVENAADSEAAEEMLLEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNG 457
L+ E++ A + L E + M D VA LKE+ M+ + C+ VV
Sbjct: 58 LAAQESSLQRSAQGDSLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA- 116
Query: 458 EDFLEGILTYGDIKRCLSKLSSDNSKGDSIASD 490
+D L GI+T D L + + D
Sbjct: 117 KDVLVGIITDSDFVTIAINLLELQEESEPDELD 149
Score = 32.7 bits (75), Expect = 0.14
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 515 TCYPDTDLAIAKELMEAKGIKQLPVIKRSREL 546
T L AK LMEA I+ +P++ +++L
Sbjct: 17 TLLRTHTLNDAKHLMEALDIRHVPIVDANKKL 48
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR
fold, structural genomics, joint center for structural
genomics, JCSG; 1.87A {Thermotoga maritima} SCOP:
d.37.1.1
Length = 157
Score = 66.5 bits (163), Expect = 4e-13
Identities = 21/147 (14%), Positives = 49/147 (33%), Gaps = 14/147 (9%)
Query: 404 AADSEAAEEMLLEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEG 463
+D ++ V + +S V ++E ++ + + + V ++ L G
Sbjct: 2 GSDKIHHHHHHMKVKDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVG 61
Query: 464 ILTYGDIKRCLSKLSSDNSKGDSIASDVNTCL----VSSICTRGISYRGRERGLLTCYPD 519
++ + + + + L S I + + D
Sbjct: 62 MIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLIAKNASEIMLDPV----------YVHMD 111
Query: 520 TDLAIAKELMEAKGIKQLPVIKRSREL 546
T L A +LM I+++PV+ E+
Sbjct: 112 TPLEEALKLMIDNNIQEMPVVDEKGEI 138
Score = 40.0 bits (94), Expect = 5e-04
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 415 LEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 474
L S M V V + L+EA++ M D + VV+ + + G L +I L
Sbjct: 93 LIAKNASEIMLDP-VYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLAL 151
Query: 475 SK 476
K
Sbjct: 152 WK 153
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine,
conformational change, unknown function; HET: SAM; 1.60A
{Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A*
Length = 122
Score = 65.2 bits (160), Expect = 4e-13
Identities = 25/128 (19%), Positives = 45/128 (35%), Gaps = 24/128 (18%)
Query: 419 KVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLS 478
V +SK + +++ EA + + N + +V+ L GI+T DI +
Sbjct: 2 LVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAK------ 55
Query: 479 SDNSKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLP 538
A N + I T R ++T + D + M I +P
Sbjct: 56 ---------ALAQNKKTIEEIMT---------RNVITAHEDEPVDHVAIKMSKYNISGVP 97
Query: 539 VIKRSREL 546
V+ R +
Sbjct: 98 VVDDYRRV 105
Score = 41.0 bits (97), Expect = 1e-04
Identities = 11/61 (18%), Positives = 22/61 (36%)
Query: 416 EELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLS 475
+ + M+++ + + M + V VV+ + GI+T DI R
Sbjct: 60 NKKTIEEIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFG 119
Query: 476 K 476
Sbjct: 120 G 120
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix,
structural genomics, unknown function, NPPSFA; 2.25A
{Pyrococcus horikoshii} SCOP: d.37.1.1
Length = 138
Score = 65.3 bits (160), Expect = 5e-13
Identities = 24/129 (18%), Positives = 47/129 (36%), Gaps = 22/129 (17%)
Query: 417 ELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDI-KRCLS 475
+ + M+K + V + +++EA M + ++V+N + + G T DI +R +
Sbjct: 6 KAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIV 65
Query: 476 KLSSDNSKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIK 535
+ V I T R L+T +T L M IK
Sbjct: 66 PGLPYDIP------------VERIMT---------RNLITANVNTPLGEVLRKMAEHRIK 104
Query: 536 QLPVIKRSR 544
+ + + +
Sbjct: 105 HILIEEEGK 113
Score = 34.9 bits (81), Expect = 0.020
Identities = 11/60 (18%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 417 ELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 476
++ V R M+++ + + L E + M + + +L+ + GI T D+ +
Sbjct: 71 DIPVERIMTRNLITANVNTPLGEVLRKMAEHRIKHILIEEEGK-IVGIFTLSDLLEASRR 129
Score = 29.9 bits (68), Expect = 1.0
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 511 RGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSREL 546
+ LL P T + A LM + L VI +
Sbjct: 15 KKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNV 50
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound
nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP
NAI; 2.70A {Agrobacterium tumefaciens str}
Length = 165
Score = 65.8 bits (161), Expect = 8e-13
Identities = 22/126 (17%), Positives = 47/126 (37%), Gaps = 19/126 (15%)
Query: 419 KVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLS 478
+ +D V V V++ EA ++ + V+V + + + GI T D+ + ++
Sbjct: 28 DLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAG-- 85
Query: 479 SDNSKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLP 538
+G VS T + ++ C ++ E+M + +P
Sbjct: 86 ----QGA----ASLQQSVSVAMT---------KNVVRCQHNSTTDQLMEIMTGGRFRHVP 128
Query: 539 VIKRSR 544
V + R
Sbjct: 129 VEENGR 134
Score = 40.8 bits (96), Expect = 3e-04
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 409 AAEEMLLEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYG 468
A + + VS AM+K+ V+ T + +E M G+ V V L GI++ G
Sbjct: 84 AGQGAASLQQSVSVAMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEENGR-LAGIISIG 142
Query: 469 DI-KRCLSKLSSDNSKGDSIAS 489
D+ K + ++ ++ + +
Sbjct: 143 DVVKARIGEIEAEAEHIKAYIA 164
Score = 28.0 bits (63), Expect = 5.4
Identities = 8/40 (20%), Positives = 15/40 (37%)
Query: 507 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSREL 546
+ R ++T PD + A + A I + V +
Sbjct: 31 DRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVV 70
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding
protein, ligand-BIND protein; 2.10A {Pyrobaculum
aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Length = 141
Score = 63.8 bits (156), Expect = 2e-12
Identities = 18/131 (13%), Positives = 47/131 (35%), Gaps = 24/131 (18%)
Query: 418 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDF--LEGILTYGDIKRCLS 475
++ S + + V + T T++E + + ++ ++ +++ DI R ++
Sbjct: 5 IRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVA 64
Query: 476 KLSSDNSKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIK 535
+ + IA+ +T + +A E M I+
Sbjct: 65 QRLDLDGPAMPIANSP----------------------ITVLDTDPVHVAAEKMRRHNIR 102
Query: 536 QLPVIKRSREL 546
+ V+ ++ EL
Sbjct: 103 HVVVVNKNGEL 113
Score = 34.2 bits (79), Expect = 0.034
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 417 ELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 476
+ + + V T + A E M+ V+VVN L G+L+ D+ +
Sbjct: 70 DGPAMPIANSP-ITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERAI 128
Query: 477 L 477
L
Sbjct: 129 L 129
>4fry_A Putative signal-transduction protein with CBS DOM; CBS
domain,ssgcid, structural genomics, niaid; HET: NAD AMP;
2.10A {Burkholderia ambifaria}
Length = 157
Score = 61.9 bits (151), Expect = 1e-11
Identities = 26/129 (20%), Positives = 43/129 (33%), Gaps = 20/129 (15%)
Query: 416 EELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLS 475
+ LK + V + +AI+ M + +LVV+G+D + GI+T D R
Sbjct: 11 QILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDD-IAGIVTERDYAR--- 66
Query: 476 KLSSDNSKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIK 535
K+ V I T + P LM ++
Sbjct: 67 KVVLQER-------SSKATRVEEIMTAK---------VRYVEPSQSTDECMALMTEHRMR 110
Query: 536 QLPVIKRSR 544
LPV+ +
Sbjct: 111 HLPVLDGGK 119
Score = 40.0 bits (94), Expect = 5e-04
Identities = 12/68 (17%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 409 AAEEMLLEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYG 468
+E + +V M+ V + + E + M + + + V++G L G+++ G
Sbjct: 69 VLQERSSKATRVEEIMTAKVRYVEPSQSTDECMALMTEHRMRHLPVLDGGK-LIGLISIG 127
Query: 469 DIKRCLSK 476
D+ + +
Sbjct: 128 DLVKSVIA 135
>2yzq_A Putative uncharacterized protein PH1780;
sheet/helix/sheet/sheet/helix, structural genomics,
unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus
horikoshii} SCOP: d.37.1.1 d.37.1.1
Length = 282
Score = 61.7 bits (150), Expect = 1e-10
Identities = 23/129 (17%), Positives = 46/129 (35%), Gaps = 26/129 (20%)
Query: 418 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKL 477
++V M+++ V + L T A+E K + VVN E L GI++ I
Sbjct: 1 MRVKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILV----- 55
Query: 478 SSDNSKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQL 537
+ D + ++ + R + + L A +LM +++
Sbjct: 56 NPDEEQ------------LAMLVK---------RDVPVVKENDTLKKAAKLMLEYDYRRV 94
Query: 538 PVIKRSREL 546
V+ +
Sbjct: 95 VVVDSKGKP 103
Score = 57.9 bits (140), Expect = 2e-09
Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 21/127 (16%)
Query: 415 LEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDI-KRC 473
+E +++ + +D V TLK+A + M + V+VV+ + GILT GDI +R
Sbjct: 57 PDEEQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRY 116
Query: 474 LSKLSSDNSKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKG 533
+K +R + + T L A + +
Sbjct: 117 FAKSEKYKGVEIE--------------------PYYQRYVSIVWEGTPLKAALKALLLSN 156
Query: 534 IKQLPVI 540
LPV+
Sbjct: 157 SMALPVV 163
Score = 50.9 bits (122), Expect = 4e-07
Identities = 25/142 (17%), Positives = 44/142 (30%), Gaps = 28/142 (19%)
Query: 419 KVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRC----- 473
++ + V LK A++++ + VV+ E L GI+ D+ R
Sbjct: 127 EIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVR 186
Query: 474 --------------LSKLSSDNSKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPD 519
S + + V+ I TR ++ P
Sbjct: 187 IMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRD---------VIVATPH 237
Query: 520 TDLAIAKELMEAKGIKQLPVIK 541
+ M I+QLPVI+
Sbjct: 238 MTVHEVALKMAKYSIEQLPVIR 259
Score = 42.1 bits (99), Expect = 3e-04
Identities = 18/85 (21%), Positives = 34/85 (40%)
Query: 392 GADELELSVVENAADSEAAEEMLLEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNC 451
+ E E + + E+ L V+ M++D + +T+ E M
Sbjct: 195 ASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQ 254
Query: 452 VLVVNGEDFLEGILTYGDIKRCLSK 476
+ V+ GE L G++ D+ + L K
Sbjct: 255 LPVIRGEGDLIGLIRDFDLLKVLVK 279
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding;
1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB:
2nye_A
Length = 144
Score = 57.2 bits (139), Expect = 5e-10
Identities = 12/126 (9%), Positives = 41/126 (32%), Gaps = 15/126 (11%)
Query: 415 LEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 474
+ +L + + +T + + I+ + G+ + V +++ +L + D+ +
Sbjct: 10 IGDLNI--ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLI 67
Query: 475 SKLSSDNSKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGI 534
++ + G+ TC + L+ + + +
Sbjct: 68 KGGIYNDL--SLSVGEALMRRSDDF-----------EGVYTCTKNDKLSTIMDNIRKARV 114
Query: 535 KQLPVI 540
+ V+
Sbjct: 115 HRFFVV 120
Score = 38.7 bits (91), Expect = 0.001
Identities = 11/59 (18%), Positives = 23/59 (38%)
Query: 416 EELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 474
E L + L +++++ + + VV+ L G+LT DI + +
Sbjct: 81 EALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYI 139
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS
domain, structural genomics, PSI-2, P structure
initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae
subsp} PDB: 3fna_A*
Length = 149
Score = 57.1 bits (139), Expect = 6e-10
Identities = 27/140 (19%), Positives = 53/140 (37%), Gaps = 34/140 (24%)
Query: 430 KVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIAS 489
V L TL++A+ + + + + + GI T GD++R
Sbjct: 42 HVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVFDT-----------GV 90
Query: 490 DVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAI-AKELMEAKGIKQLPVIKRSRELQR 548
D+ ++ + TRG + P T LA+ A LM+++ I + V
Sbjct: 91 DMRDASIADVMTRGG---------IRIRPGT-LAVDALNLMQSRHITCVLVAD------- 133
Query: 549 RRKQRIVAILHYDSIWNCLR 568
++ ++H + + LR
Sbjct: 134 --GDHLLGVVH---MHDLLR 148
Score = 27.8 bits (63), Expect = 5.5
Identities = 12/58 (20%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 415 LEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 472
+ + ++ M++ +++ +A+ M+ CVLV + D L G++ D+ R
Sbjct: 92 MRDASIADVMTRGGIRIRPGTLAVDALNLMQSRHITCVLVAD-GDHLLGVVHMHDLLR 148
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS
domain, lipid synthesis, fatty acid biosynthesis; HET:
AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Length = 152
Score = 56.9 bits (138), Expect = 6e-10
Identities = 21/132 (15%), Positives = 46/132 (34%), Gaps = 15/132 (11%)
Query: 415 LEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 474
LEEL++ + V T + A+ + + + VV+ + + I + D+
Sbjct: 20 LEELQI--GTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLA 77
Query: 475 SKLSSDNSKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGI 534
++ + +N + V L G+L CY L + +
Sbjct: 78 AEKTYNN-----LDVSVTKALQHRSHYF--------EGVLKCYLHETLETIINRLVEAEV 124
Query: 535 KQLPVIKRSREL 546
+L V+ + +
Sbjct: 125 HRLVVVDENDVV 136
Score = 44.2 bits (105), Expect = 2e-05
Identities = 14/59 (23%), Positives = 31/59 (52%)
Query: 416 EELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 474
+ L+ + +K L TL+ I + + + + ++VV+ D ++GI++ DI + L
Sbjct: 91 KALQHRSHYFEGVLKCYLHETLETIINRLVEAEVHRLVVVDENDVVKGIVSLSDILQAL 149
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox
regulator, plant CBS domain, thiored chloroplast,
membrane protein; 1.91A {Arabidopsis thaliana}
Length = 180
Score = 57.8 bits (140), Expect = 7e-10
Identities = 22/138 (15%), Positives = 52/138 (37%), Gaps = 9/138 (6%)
Query: 418 LKVSRAMS--KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLS 475
V M+ ++ V + ++ +A+E + + + + V++ L G+++ D+ S
Sbjct: 4 YTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDS 63
Query: 476 KLSSDNSKGDSIASDVNTCLVSSICTRGISYRGRE-------RGLLTCYPDTDLAIAKEL 528
+ + +T + + IS + L T+L A L
Sbjct: 64 ISGRSQNDTNLFPDVDSTWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARL 123
Query: 529 MEAKGIKQLPVIKRSREL 546
+ ++LPV+ +L
Sbjct: 124 LLETKFRRLPVVDADGKL 141
Score = 40.9 bits (96), Expect = 4e-04
Identities = 14/79 (17%), Positives = 32/79 (40%)
Query: 415 LEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 474
V M+ + V + L++A + + + + VV+ + L GILT G++ R
Sbjct: 95 TYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAA 154
Query: 475 SKLSSDNSKGDSIASDVNT 493
++ + + +
Sbjct: 155 LQIKRNADSISGRSQNDTN 173
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2,
protein structure initiative; HET: NAD; 1.60A
{Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Length = 135
Score = 56.1 bits (136), Expect = 8e-10
Identities = 24/129 (18%), Positives = 40/129 (31%), Gaps = 23/129 (17%)
Query: 419 KVSRAMSK---DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLS 475
V + + V + ++ A++ M +LV+ E L GILT D R
Sbjct: 7 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEK-LVGILTERDFSRKSY 65
Query: 476 KLSSDNSKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIK 535
L V V I TR + + L+ ++
Sbjct: 66 LLDKP----------VKDTQVKEIMTRQ---------VAYVDLNNTNEDCMALITEMRVR 106
Query: 536 QLPVIKRSR 544
LPV+ +
Sbjct: 107 HLPVLDDGK 115
Score = 40.3 bits (95), Expect = 3e-04
Identities = 12/69 (17%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 409 AAEEMLLEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYG 468
+ +++ +V M++ V L T ++ + + + + + V++ + G+L+ G
Sbjct: 65 YLLDKPVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLDDGK-VIGLLSIG 123
Query: 469 DI-KRCLSK 476
D+ K +S+
Sbjct: 124 DLVKDAISQ 132
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.8 bits (147), Expect = 1e-09
Identities = 57/327 (17%), Positives = 99/327 (30%), Gaps = 108/327 (33%)
Query: 164 GMLCG--------VVSVVFTRLVAWFTKSFDF-----IKEKFGLPPVVCPALGGLGAGII 210
GM G V+ R F ++ F + P + GG I
Sbjct: 1630 GM--GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINN---PVNLTIHFGGEKGKRI 1684
Query: 211 ALRYPGILY----WGFTNVEEILHTGKTASAPGIW-----LLTQLAAAKVVATALCKGSG 261
Y +++ G E+I S + LL+ T
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA--------TQ------ 1730
Query: 262 LVGGLYA-PSLMIGAAVG-AVFGGSAAEIINSA--IPGNVAVA-----EPQAY-ALVGMA 311
+ P+L + A F E + S IP + A E Y AL +A
Sbjct: 1731 -----FTQPALT---LMEKAAF-----EDLKSKGLIPADATFAGHSLGE---YAALASLA 1774
Query: 312 ATLASVCSVPLTSVL-LLFELTRDYRILLPLMGAVGLAIWVPSVANQAKETDASDKRTLA 370
+ + S++ ++F YR G+ + VA E S+ +A
Sbjct: 1775 DVM------SIESLVEVVF-----YR---------GMTM---QVAVPRDELGRSNYGMIA 1811
Query: 371 RGYSSLSP---MEDKNEVLWRRTDGADELELSVVEN----------AADSEAAEEMLLEE 417
++ E V+ R L + +V N A D A + +
Sbjct: 1812 INPGRVAASFSQEALQYVVERVGKRTGWL-VEIV-NYNVENQQYVAAGDLRALDT-VTNV 1868
Query: 418 LKVSRAMSKDFVKVALTVTLKEAIESM 444
L + D +++ +++L E +E
Sbjct: 1869 LNFIKLQKIDIIELQKSLSL-EEVEGH 1894
Score = 41.6 bits (97), Expect = 9e-04
Identities = 49/334 (14%), Positives = 95/334 (28%), Gaps = 128/334 (38%)
Query: 259 GSGLVG-G--LYAPSLMIGAAVGAVF-----------GGSAAEIINSAIPGNVAVAEP-- 302
GS G G LY S A V+ G S +I+ + P N+ +
Sbjct: 1625 GSQEQGMGMDLYKTS----KAAQDVWNRADNHFKDTYGFSILDIVINN-PVNLTIHFGGE 1679
Query: 303 ------QAYALVGMAATLASVCSVPLTSVLLLFELTRDYRI--------LL-------PL 341
+ Y A ++ L + + E+ LL P
Sbjct: 1680 KGKRIRENY----SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPA 1735
Query: 342 MGAVGLAIWVPSVANQA--KETDASDKRTLARG-----YSSLS------PMEDKNEVLWR 388
+ + A + + + T A G Y++L+ +E EV++
Sbjct: 1736 LTLMEKAAF------EDLKSKGLIPADATFA-GHSLGEYAALASLADVMSIESLVEVVFY 1788
Query: 389 RTDGADELELSVVENAADSEAAEEML-LEELKVSRAMSKDFVKVALTVTLKEAIESMKDG 447
R G V + M+ + +V+ + S++ L+ +E +
Sbjct: 1789 R--G--MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQE--------ALQYVVERVGKR 1836
Query: 448 QQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISYR 507
V +VN N + V++
Sbjct: 1837 TGWLVEIVN-----------------------YNVENQQY--------VAA--------- 1856
Query: 508 GRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIK 541
G R L DT ++ ++++ +I+
Sbjct: 1857 GDLRAL-----DT----VTNVLNFIKLQKIDIIE 1881
Score = 41.2 bits (96), Expect = 0.001
Identities = 100/583 (17%), Positives = 172/583 (29%), Gaps = 204/583 (34%)
Query: 107 LRPL-----RAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYL 161
RPL E+ TA +AS + + +L F + + AEL +
Sbjct: 6 TRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFA-ADDEPTTPAEL-VGK 63
Query: 162 ILGMLCGVVS----VVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGI 217
LG + +V F +++ F+ + L G
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFE---NCY---------LEG------------- 98
Query: 218 LYWGFTNVEEILHTGKTASAPGIWLLTQLAAAKVVAT--ALCKGSGLVGGLYAPSLMIGA 275
+I H A T + +++ + + S + A
Sbjct: 99 --------NDI-HA-LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRA 148
Query: 276 A------VGAVFGGSAAEIINSAIPGNVA--VAEPQ----AY-ALVG-----MAATLASV 317
+ A+FGG GN E + Y LVG A TL+ +
Sbjct: 149 VGEGNAQLVAIFGGQ----------GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSEL 198
Query: 318 CSVPLTSVLLL---FELTR-----------DY----RILLPLMGAVGLAIWVPSVANQAK 359
L + + + DY I PL+G + LA +V V +
Sbjct: 199 IRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYV--VTAKLL 256
Query: 360 ETDASDKRTLARGYS------------SLSPMED---KN-----EVL----WR--RTDGA 393
+ R+ +G + + + + + VL R
Sbjct: 257 GFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPN 316
Query: 394 DELELSVVENAADSEAAEE-----MLLEELKVSRAMSKDFVKVALTVT-----LKEAIE- 442
L S++E DS E ML + ++++ V+ + T + +E
Sbjct: 317 TSLPPSILE---DSLENNEGVPSPMLS----I-SNLTQEQVQDYVNKTNSHLPAGKQVEI 368
Query: 443 SMKDGQQNCVLVVNG--EDFLEGILTYGDIKRCLSKLSS----DNSKGDSIASDVNTCLV 496
S+ +G +N LVV+G + L G+ L K + D S+
Sbjct: 369 SLVNGAKN--LVVSGPPQS-LYGLNLT------LRKAKAPSGLDQSR------------- 406
Query: 497 SSICTRGISYRGRE-----RGL-LTCYP-------------DTDLAIAKELMEAKGIKQL 537
I + R+ R L + P + DL AK I+ +
Sbjct: 407 -------IPFSERKLKFSNRFLPVAS-PFHSHLLVPASDLINKDLVKNNVSFNAKDIQ-I 457
Query: 538 PVI-----KRSRELQRRRKQRIV-AILHYDSIW-NCLREEVNH 573
PV R L +RIV I+ W + + H
Sbjct: 458 PVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATH 500
Score = 35.8 bits (82), Expect = 0.048
Identities = 59/423 (13%), Positives = 106/423 (25%), Gaps = 157/423 (37%)
Query: 5 LLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEG-PSVDIGKSCAN 63
L E++ + + QG +++ ++ P P D S
Sbjct: 195 LSELIRTTLDAEKVFTQGLNILE-------WLE-----------NPSNTPDKDYLLSIP- 235
Query: 64 GFSLMMENNRERKIALVAAG--AASGIASGFN-AAVAGCFFAIETVLRPLRAENSPPFTT 120
S + I ++ + GF + +
Sbjct: 236 -ISCPL-------IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGH-------------S 274
Query: 121 AMIILASVISSTVSTVLLGTQSAFTVPSYDL-KSAAELPLYLILGMLCGVVSV-VFTRLV 178
++ A I+ T + +F + + A + L+ I GV +
Sbjct: 275 QGLVTAVAIAET------DSWESF----FVSVRKAITV-LFFI-----GVRCYEAYPNTS 318
Query: 179 AWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTASAP 238
+ D ++ G+P P L ++ T + + KT
Sbjct: 319 LPPSILEDSLENNEGVP---SPML--------SIS-------NLTQEQVQDYVNKTN--- 357
Query: 239 GIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVA 298
+ L A K V +L +N N+
Sbjct: 358 -----SHLPAGKQVEISL--------------------------------VNG--AKNLV 378
Query: 299 VAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRD-YRILL----PLMGAVGLAIWVP- 352
V+ P +L G+ TL + D RI L + P
Sbjct: 379 VSGPPQ-SLYGLNLTLRKAKAPS----------GLDQSRIPFSERKLKFSNRFLPVASPF 427
Query: 353 -----SVANQAKETDASDKRTLARGYSSLS-PMEDKNEVLWRRT-DGAD--ELELSVVEN 403
A+ D + P+ D T DG+D L S+ E
Sbjct: 428 HSHLLVPASDLINKDLVKNNVSFNA-KDIQIPVYD--------TFDGSDLRVLSGSISER 478
Query: 404 AAD 406
D
Sbjct: 479 IVD 481
Score = 29.6 bits (66), Expect = 3.3
Identities = 37/249 (14%), Positives = 76/249 (30%), Gaps = 63/249 (25%)
Query: 362 DASDKR--TLARG---YSSLSPMEDKNEVLWRRTDGADELE---LSVVENAADSEAAEEM 413
DA R TL+ G + L P + A +L+ ++ + AA++
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTA-----SFFI---ASQLQEQFNKILPEPTEGFAADDE 53
Query: 414 L--LEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIK 471
EL V + + +V +E K GQ + VL + +F L DI
Sbjct: 54 PTTPAEL-VGKFLG--YVS--------SLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH 102
Query: 472 RCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISYRGRER-GLLTCYPDTDLAIA----- 525
+KL +N ++ +++ + + L + + +
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG 162
Query: 526 --------KELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLREEVNHR--- 574
+EL R+L + + ++ L E +
Sbjct: 163 QGNTDDYFEEL---------------RDLYQTYHVLVGDLI--KFSAETLSELIRTTLDA 205
Query: 575 KSVYQHSKD 583
+ V+ +
Sbjct: 206 EKVFTQGLN 214
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation,
nucleotide-binding, serine/threonine-protei kinase,
magnesium, CBS domain; HET: AMP; 2.10A {Rattus
norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E*
2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Length = 330
Score = 59.2 bits (143), Expect = 1e-09
Identities = 21/133 (15%), Positives = 47/133 (35%), Gaps = 17/133 (12%)
Query: 415 LEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 474
LEEL++ + V T + A+ + + + VV+ + + I + D+
Sbjct: 192 LEELQI--GTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLA 249
Query: 475 SKLSSDNSKGDSIASDVNTCLVSSICTRGISYRGRE-RGLLTCYPDTDLAIAKELMEAKG 533
++ + +N T+ + +R G+L CY L +
Sbjct: 250 AEKTYNNLDVS--------------VTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAE 295
Query: 534 IKQLPVIKRSREL 546
+ +L V+ +
Sbjct: 296 VHRLVVVDEHDVV 308
Score = 51.9 bits (124), Expect = 2e-07
Identities = 21/124 (16%), Positives = 46/124 (37%), Gaps = 12/124 (9%)
Query: 424 MSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGED-FLEGILTYGDIKRCLSKLSSDNS 482
K V ++ +L +A+ S+ + + + V++ E ILT+ I + L ++
Sbjct: 124 SFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFP 183
Query: 483 KGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKR 542
K + + S+ I G + T + +A + + LPV+
Sbjct: 184 KPE--------FMSKSLEELQI---GTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDE 232
Query: 543 SREL 546
+
Sbjct: 233 KGRV 236
Score = 51.1 bits (122), Expect = 5e-07
Identities = 27/169 (15%), Positives = 53/169 (31%), Gaps = 15/169 (8%)
Query: 425 SKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDF-LEGILTYGDIKRCLSKLSSDNSK 483
S V ++ +K+A ++ + + + G+LT D L +
Sbjct: 44 SSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALV 103
Query: 484 GDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRS 543
+ R + + + L+ P+ L A + I +LPVI
Sbjct: 104 QIYELEEHKIETW-----REVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPE 158
Query: 544 RELQRRRKQRIVAILHYDSIWNCLREEVNHRKSVYQHSKDKNLEEISNG 592
+ IL + I ++ + K+LEE+ G
Sbjct: 159 -------SGNTLYILTHKRI--LKFLKLFITEFPKPEFMSKSLEELQIG 198
Score = 46.1 bits (109), Expect = 2e-05
Identities = 14/66 (21%), Positives = 32/66 (48%)
Query: 416 EELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLS 475
+ L+ + +K L TL+ I + + + + ++VV+ D ++GI++ DI + L
Sbjct: 263 KALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALV 322
Query: 476 KLSSDN 481
+
Sbjct: 323 LTGGEK 328
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima}
SCOP: d.37.1.1
Length = 213
Score = 56.7 bits (137), Expect = 3e-09
Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 26/131 (19%)
Query: 416 EELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLS 475
+KV + +++DF V + T++E + M+ Q N +V + E G++ D+
Sbjct: 11 HHMKVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLL---- 66
Query: 476 KLSSDNSKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIK 535
L D+S + ++ + + ++ A L
Sbjct: 67 DLDLDSSVFNKVSLPD----------------------FFVHEEDNITHALLLFLEHQEP 104
Query: 536 QLPVIKRSREL 546
LPV+ L
Sbjct: 105 YLPVVDEEMRL 115
Score = 45.9 bits (109), Expect = 1e-05
Identities = 13/69 (18%), Positives = 27/69 (39%)
Query: 416 EELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLS 475
+ V +S V + A+ + Q+ + VV+ E L+G ++ D L
Sbjct: 70 LDSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALI 129
Query: 476 KLSSDNSKG 484
+ + + G
Sbjct: 130 EALAMDVPG 138
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national
project on protein structural functional analyses; 2.50A
{Geobacillus kaustophilus}
Length = 157
Score = 54.4 bits (131), Expect = 5e-09
Identities = 19/88 (21%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 400 VVENAADSEAAEEMLLEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGED 459
+++ E E LE +KV M+++ ++ L +L +A+ + + V V N +
Sbjct: 65 MMDAILGLERIEFERLETMKVEEVMNRNIPRLRLDDSLMKAVGLIVN--HPFVCVENDDG 122
Query: 460 FLEGILTYGDIKRCLSKLSSDNSKGDSI 487
+ GI T ++ + L+K + G +
Sbjct: 123 YFAGIFTRREVLKQLNKQLHRPNGGRKL 150
Score = 51.3 bits (123), Expect = 7e-08
Identities = 18/142 (12%), Positives = 38/142 (26%), Gaps = 21/142 (14%)
Query: 407 SEAAEEMLLEELKVSRAM--SKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGI 464
+ E + V + + V L A+ + + + V++ L G+
Sbjct: 2 TWEHNEFMQM--TVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGL 59
Query: 465 LTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAI 524
++ + + L + + T V + R I D L
Sbjct: 60 ISMTMMMDAILGLERIEFE------RLETMKVEEVMNRNI---------PRLRLDDSLMK 104
Query: 525 AKELMEAKGIKQLPVIKRSREL 546
A L+ + V
Sbjct: 105 AVGLIVNHPF--VCVENDDGYF 124
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS)
domain, structural genomics, protein structure
initiative, PSI; 2.10A {Bacillus subtilis} SCOP:
d.37.1.1
Length = 159
Score = 54.4 bits (131), Expect = 6e-09
Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Query: 400 VVENAADSEAAEEMLLEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGED 459
++ + E E L+++ V M D ++ + + + + + V V N E
Sbjct: 68 IMNSIFGLERIEFEKLDQITVEEVMLTDIPRLHINDPIMKGFGMVIN--NGFVCVENDEQ 125
Query: 460 FLEGILTYGDIKRCLSKLSSDNSK 483
EGI T + + L+K +K
Sbjct: 126 VFEGIFTRRVVLKELNKHIRSLNK 149
Score = 51.3 bits (123), Expect = 6e-08
Identities = 14/140 (10%), Positives = 41/140 (29%), Gaps = 17/140 (12%)
Query: 407 SEAAEEMLLEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILT 466
S ++++L + + V + L+ A+ + + V++ L G++
Sbjct: 5 SLQSDQLLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIG 64
Query: 467 YGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAK 526
I + L + ++ V + I + + +
Sbjct: 65 TNMIMNSIFGLERIEFE------KLDQITVEEVMLTDI---------PRLHINDPIMKGF 109
Query: 527 ELMEAKGIKQLPVIKRSREL 546
++ G + V +
Sbjct: 110 GMVINNGF--VCVENDEQVF 127
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase
(CBS) domains containing protein, transport protein;
1.60A {Homo sapiens}
Length = 164
Score = 53.9 bits (129), Expect = 9e-09
Identities = 22/129 (17%), Positives = 42/129 (32%), Gaps = 12/129 (9%)
Query: 418 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGED--FLEGILTYGDIKRCLS 475
++V M+ +A L+E ++ + +V + L GI+ + + L
Sbjct: 13 VRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQ 72
Query: 476 KLSSDNSKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIK 535
+ G E LT + +T L A+ L + ++
Sbjct: 73 AEPPSRAPGHQQCLQDIL----------ARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQ 122
Query: 536 QLPVIKRSR 544
L V R R
Sbjct: 123 SLFVTSRGR 131
Score = 33.4 bits (76), Expect = 0.083
Identities = 11/77 (14%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Query: 411 EEMLLEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDI 470
++ L + L + + TL +A K + V + G +++ ++
Sbjct: 83 QQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS-RGRAVGCVSWVEM 141
Query: 471 KRCLSKLSSDNSKGDSI 487
K+ +S L++ + + +
Sbjct: 142 KKAISNLTNPPAPKEFL 158
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function,
center for structural genomics of infectious diseases;
1.80A {Bacillus anthracis}
Length = 150
Score = 53.2 bits (128), Expect = 1e-08
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 400 VVENAADSEAAEEMLLEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGED 459
+++ E E LEE+KV + M +D + L + +A+E D + VN +
Sbjct: 69 ILDGILGLERIEFERLEEMKVEQVMKQDIPVLKLEDSFAKALEMTID--HPFICAVNEDG 126
Query: 460 FLEGILTYGDIKRCLSKLSSDNSK 483
+ EGILT I + L+K +++
Sbjct: 127 YFEGILTRRAILKLLNKKVRQHNR 150
Score = 52.8 bits (127), Expect = 2e-08
Identities = 16/134 (11%), Positives = 40/134 (29%), Gaps = 19/134 (14%)
Query: 415 LEELKVSRAM--SKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 472
+++ V M S+ V + L+ A+ + + + V++ L G+++ I
Sbjct: 12 FQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILD 71
Query: 473 CLSKLSSDNSKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAK 532
+ L + + V + + I + A A E+
Sbjct: 72 GILGLERIEFE------RLEEMKVEQVMKQDI---------PVLKLEDSFAKALEMTIDH 116
Query: 533 GIKQLPVIKRSREL 546
+ +
Sbjct: 117 PF--ICAVNEDGYF 128
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure
initiative, midwest center for structural genomics,
MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Length = 156
Score = 52.7 bits (127), Expect = 2e-08
Identities = 19/141 (13%), Positives = 36/141 (25%), Gaps = 18/141 (12%)
Query: 407 SEAAEEMLLEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILT 466
++ E LL + + +K+ + T A + V VV E G +
Sbjct: 6 AKEFETFLLGQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIG 65
Query: 467 YGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAK 526
DI + + + + PD +
Sbjct: 66 LRDIMAYQMEHDLSQEIMADT-------DIVHMTKTDV---------AVVSPDFTITEVL 109
Query: 527 ELMEAKGIKQLPVIKRSRELQ 547
+ + LPV+ Q
Sbjct: 110 HKLVDESF--LPVVDAEGIFQ 128
Score = 52.0 bits (125), Expect = 4e-08
Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 411 EEMLLEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDI 470
+ ++ + + D V+ T+ E + + D ++ + VV+ E +GI+T I
Sbjct: 79 SQEIMADTDIVHMTKTDVAVVSPDFTITEVLHKLVD--ESFLPVVDAEGIFQGIITRKSI 136
Query: 471 KRCLSKLSSDNSK 483
+ ++ L D SK
Sbjct: 137 LKAVNALLHDFSK 149
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol,
protein binding; HET: ADP; 2.30A {Saccharomyces
cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Length = 323
Score = 52.7 bits (126), Expect = 1e-07
Identities = 13/122 (10%), Positives = 42/122 (34%), Gaps = 13/122 (10%)
Query: 419 KVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLS 478
++ + +T + + I+ + G+ + V +++ +L + D+ +
Sbjct: 191 DLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGI 250
Query: 479 SDNSKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLP 538
++ L S+ + G+ TC + L+ + + + +
Sbjct: 251 YND-------------LSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFF 297
Query: 539 VI 540
V+
Sbjct: 298 VV 299
Score = 44.6 bits (105), Expect = 6e-05
Identities = 22/168 (13%), Positives = 57/168 (33%), Gaps = 8/168 (4%)
Query: 425 SKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDF-LEGILTYGDIKRCLSKLSSDNSK 483
S + + ++ +K+++ + + + + G+LT D + S+ K
Sbjct: 39 SYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPDK 98
Query: 484 GDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRS 543
+ V+ + + + + + +P L A M ++P+I +
Sbjct: 99 FE----LVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQD 154
Query: 544 RELQRRRKQRIVAILHYDSIWNCLREEVNHRKSVYQHSKDKNLEEISN 591
E ++ +V++L I + + D N+ N
Sbjct: 155 EE---THREIVVSVLTQYRILKFVALNCRETHFLKIPIGDLNIITQDN 199
Score = 42.3 bits (99), Expect = 3e-04
Identities = 16/144 (11%), Positives = 46/144 (31%), Gaps = 19/144 (13%)
Query: 408 EAAEEMLLEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVV-----NGEDFLE 462
+ + L + + D + + L EA M + + + ++ + +
Sbjct: 104 KLQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVV 163
Query: 463 GILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDL 522
+LT I + ++ + D+N + + +C T +
Sbjct: 164 SVLTQYRILKFVALNCRETHFLKIPIGDLNI--------------ITQDNMKSCQMTTPV 209
Query: 523 AIAKELMEAKGIKQLPVIKRSREL 546
+++ + +P+I + L
Sbjct: 210 IDVIQMLTQGRVSSVPIIDENGYL 233
Score = 41.1 bits (96), Expect = 7e-04
Identities = 12/64 (18%), Positives = 25/64 (39%)
Query: 416 EELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLS 475
E L + L +++++ + + VV+ L G+LT DI + +
Sbjct: 260 EALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYIL 319
Query: 476 KLSS 479
S+
Sbjct: 320 LGSN 323
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,
nucleotide-binding, serine/T protein kinase,
transferase, CBS domain; HET: ADP ATP; 2.41A
{Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G*
2oox_G* 2ooy_G*
Length = 334
Score = 51.4 bits (123), Expect = 3e-07
Identities = 18/139 (12%), Positives = 48/139 (34%), Gaps = 16/139 (11%)
Query: 411 EEMLLEELKVSR---AMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTY 467
+E + + +++ + ++ + + I+ + + + V +VN E L +
Sbjct: 175 KETAMLRVPLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYES 234
Query: 468 GDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKE 527
D+ + N L S+ + G+ TC L +
Sbjct: 235 VDVMHLIQDGDYSN-------------LDLSVGEALLKRPANFDGVHTCRATDRLDGIFD 281
Query: 528 LMEAKGIKQLPVIKRSREL 546
++ + +L V+ + +L
Sbjct: 282 AIKHSRVHRLFVVDENLKL 300
Score = 42.2 bits (99), Expect = 3e-04
Identities = 23/157 (14%), Positives = 53/157 (33%), Gaps = 7/157 (4%)
Query: 425 SKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDF-LEGILTYGDIKRCLSKLSSDNSK 483
S + +T+ +K ++ + + + E G+LT D + +S
Sbjct: 31 SFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSF 90
Query: 484 GDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRS 543
++IA +++ + + + +P L A M +++P+I
Sbjct: 91 PEAIA-EIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVD 149
Query: 544 RELQRRRKQRIVA---ILHYDSIWNCLREEVNHRKSV 577
E ++ IL + I +E R +
Sbjct: 150 GETGSEMIVSVLTQYRILKF--ISMNCKETAMLRVPL 184
Score = 40.6 bits (95), Expect = 0.001
Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 9/83 (10%)
Query: 417 ELKVSRAMSK------DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDI 470
+L V A+ K T L +++K + + + VV+ LEGIL+ DI
Sbjct: 250 DLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADI 309
Query: 471 KRCLSKLSSDNSKGDSIASDVNT 493
L+ + D + + +
Sbjct: 310 ---LNYIIYDKTTTPGVPEQTDN 329
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics,
PSI-2, protein structure initiative; HET: EPE; 1.66A
{Chlorobium tepidum tls}
Length = 128
Score = 47.8 bits (114), Expect = 7e-07
Identities = 15/123 (12%), Positives = 33/123 (26%), Gaps = 22/123 (17%)
Query: 418 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKL 477
+ S D+ L + +A + C V++GE +L G++ +
Sbjct: 5 VTFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDGERYL-GMVHLSRLLEGRKGW 63
Query: 478 SSDNSKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQL 537
+ K + + + P L + A +
Sbjct: 64 PTVKEK------------LGEELLETV---------RSYRPGEQLFDNLISVAAAKCSVV 102
Query: 538 PVI 540
P+
Sbjct: 103 PLA 105
Score = 42.4 bits (100), Expect = 4e-05
Identities = 9/69 (13%), Positives = 27/69 (39%)
Query: 408 EAAEEMLLEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTY 467
E + + K+ + + L + + S+ + + V + + + EG+++
Sbjct: 58 EGRKGWPTVKEKLGEELLETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSR 117
Query: 468 GDIKRCLSK 476
I L++
Sbjct: 118 KRILGFLAE 126
Score = 28.9 bits (65), Expect = 2.4
Identities = 8/35 (22%), Positives = 10/35 (28%)
Query: 510 ERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSR 544
E A A + A G PV+ R
Sbjct: 12 ETDYPVFTLGGSTADAARRLAASGCACAPVLDGER 46
>2j9l_A Chloride channel protein 5; ION channel, ION transport,
voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP:
d.37.1.1 PDB: 2ja3_A*
Length = 185
Score = 48.7 bits (116), Expect = 7e-07
Identities = 19/139 (13%), Positives = 36/139 (25%), Gaps = 12/139 (8%)
Query: 418 LKVSRAMSKDFVKVALTV------TLKEAIESMKDGQQNCVLVVNGED--FLEGILTYGD 469
M LTV T+++ + + + VV + L G + D
Sbjct: 11 TLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRD 70
Query: 470 IKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISYRGRE----RGLLTCYPDTDLAIA 525
+ + S + T + T T + I
Sbjct: 71 LIISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIV 130
Query: 526 KELMEAKGIKQLPVIKRSR 544
++ G++Q V R
Sbjct: 131 VDIFRKLGLRQCLVTHNGR 149
Score = 36.0 bits (83), Expect = 0.014
Identities = 13/95 (13%), Positives = 34/95 (35%), Gaps = 1/95 (1%)
Query: 387 WRRTDGADELELSVVENAADSEAAEEMLLEELKVSRAMSKDFVKVALTVTLKEAIESMKD 446
R + S++ S LK+ + V ++ ++ +
Sbjct: 77 NARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRK 136
Query: 447 GQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDN 481
LV + L GI+T D+ + ++++++ +
Sbjct: 137 LGLRQCLVTH-NGRLLGIITKKDVLKHIAQMANQD 170
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.1 bits (116), Expect = 4e-06
Identities = 66/442 (14%), Positives = 112/442 (25%), Gaps = 145/442 (32%)
Query: 181 FTKSFDF---------------IKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNV 225
F +FD I V L L + F V
Sbjct: 29 FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW---TLLSKQEEMVQKF--V 83
Query: 226 EEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSA 285
EE+L +L++ + + ++ +Y VF
Sbjct: 84 EEVLRINYK------FLMSPIKTE-------QRQPSMMTRMYIEQRDRLYNDNQVF---- 126
Query: 286 AEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLMGAV 345
NV+ +P L LL EL +L+ +
Sbjct: 127 -------AKYNVSRLQPYL----------------KLRQALL--ELRPAKNVLIDGVLGS 161
Query: 346 GLAIWVPSVANQAKETDASDKRTLA----RGYSSLSPMEDKNEVLWRRTDGADELELSVV 401
G K +A Y M+ K + W L++
Sbjct: 162 G-------------------KTWVALDVCLSYKVQCKMDFK--IFW----------LNL- 189
Query: 402 ENAADSEAAEEMLLEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVN-GEDF 460
+ + E +LE L+ L + S D N L ++ +
Sbjct: 190 ----KNCNSPETVLEMLQ------------KLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 461 LEGILTYGDIKRCLSKLSSDNSKGDSIASDVN-TC--LVSSICTRGISYRGRERGLLTCY 517
L +L + CL L N + + N +C L++ TR T +
Sbjct: 234 LRRLLKSKPYENCLLVL--LNVQNAKAWNAFNLSCKILLT---TRFKQVTDFLSAATTTH 288
Query: 518 PDTDLAIA----KELME--AK----GIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCL 567
D E+ K + LP RE+ I +
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP-----REVLT------TNPRRLSIIAESI 337
Query: 568 REEVNHRKSVYQHSKDKNLEEI 589
R+ + + ++H L I
Sbjct: 338 RDGLATWDN-WKHVNCDKLTTI 358
Score = 34.4 bits (78), Expect = 0.14
Identities = 27/165 (16%), Positives = 57/165 (34%), Gaps = 34/165 (20%)
Query: 426 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGD 485
KD + V ++A + + +C V +D + IL+ +I + SK
Sbjct: 19 KDILSV-----FEDAF--VDN--FDCKDV---QDMPKSILSKEEIDHII------MSKDA 60
Query: 486 SIASDVNTCLVSSICTRG--ISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRS 543
+ L ++ ++ + + E L Y I E +Q ++ R
Sbjct: 61 VSGTLR---LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ------RQPSMMTRM 111
Query: 544 RELQRRRKQRIVAILHYDSIWNCLREEVNH--RKSVYQHSKDKNL 586
QR R + ++ R + R+++ + KN+
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVS---RLQPYLKLRQALLELRPAKNV 153
>3fio_A A cystathionine beta-synthase domain protein fused to A
Zn-ribbon-like domain; PF1953,APC40009,cystathionine
beta-synthase domain protein; 1.81A {Pyrococcus
furiosus} PDB: 3ghd_A
Length = 70
Score = 35.6 bits (83), Expect = 0.003
Identities = 12/75 (16%), Positives = 29/75 (38%), Gaps = 13/75 (17%)
Query: 429 VKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDI-KRCLSKLSSDNSKGDSI 487
+ V T+ + + + +V+ G++ + G++T DI + ++K
Sbjct: 3 IVVQPKDTVDRVAKILSRNKAGSAVVMEGDE-ILGVVTERDILDKVVAK----------- 50
Query: 488 ASDVNTCLVSSICTR 502
+ V I T+
Sbjct: 51 GKNPKEVKVEEIMTK 65
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase;
HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB:
3pc2_A* 3pc4_A*
Length = 527
Score = 38.9 bits (91), Expect = 0.004
Identities = 15/88 (17%), Positives = 35/88 (39%), Gaps = 5/88 (5%)
Query: 406 DSEAAEEMLLEELKVS-RAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGED-FLEG 463
+ L ++ + V + T+ EAI MK + + + VV+ +D + G
Sbjct: 372 EPVNEHGHWWWSLAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLG 431
Query: 464 ILTYGDIKRCLSKLSSDNSKGDSIASDV 491
++ + ++++ S N + A
Sbjct: 432 VVGQETL---ITQIVSMNRQQSDPAIKA 456
Score = 31.5 bits (72), Expect = 0.75
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 504 ISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIK 541
I+ + D + A LM+ + QLPV+
Sbjct: 386 IAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVD 423
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II,
CBS domain, bateman domain, AP4A, diadenosine
polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium
perfringens} PDB: 3l31_A*
Length = 245
Score = 38.0 bits (87), Expect = 0.005
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 418 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRC 473
LKV +A V+LK A M+D + V +G + L G+L+ +I
Sbjct: 7 LKVEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITAT 62
Score = 34.5 bits (78), Expect = 0.060
Identities = 15/79 (18%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 393 ADELELSVVENAADSEAAEEMLLEELKVSRAMSKD-FVKVALTVTLKEAIESMKDGQQNC 451
A + ++V+ DS A ++++ L V M+KD V V+ +++ +M + + +
Sbjct: 160 AKKNNITVITTPHDSFTASRLIVQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSN 219
Query: 452 VLVVNGEDFLEGILTYGDI 470
V++ + + G + +
Sbjct: 220 YPVIDENNKVVGSIARFHL 238
Score = 34.1 bits (77), Expect = 0.084
Identities = 20/150 (13%), Positives = 41/150 (27%), Gaps = 21/150 (14%)
Query: 391 DGADELELSVVENAADSEAAEEMLLEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQN 450
+ VV A +E+ +E + E + E + + + +
Sbjct: 95 EERKVFPGKVVVAAMQAESLKEFISEGDIA------------IAGDRAEIQAELIELKVS 142
Query: 451 CVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISYRGRE 510
++V G + I+ + D T + + + Y +
Sbjct: 143 LLIVTGGHTPSKEIIELAKKNNITVITTPH---------DSFTASRLIVQSLPVDYVMTK 193
Query: 511 RGLLTCYPDTDLAIAKELMEAKGIKQLPVI 540
L+ D + K M PVI
Sbjct: 194 DNLVAVSTDDLVEDVKVTMSETRYSNYPVI 223
Score = 33.7 bits (76), Expect = 0.11
Identities = 11/83 (13%), Positives = 27/83 (32%), Gaps = 8/83 (9%)
Query: 511 RGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLREE 570
+ P+ L +A +M K +K +PV ++ +L +I +
Sbjct: 15 DKIAPLAPEVSLKMAWNIMRDKNLKSIPVA--------DGNNHLLGMLSTSNITATYMDI 66
Query: 571 VNHRKSVYQHSKDKNLEEISNGH 593
+ + N+ + +
Sbjct: 67 WDSNILAKSATSLDNILDTLSAE 89
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P
structure initiative, nysgxrc; 2.16A {Enterococcus
faecalis} SCOP: a.118.26.1 d.37.1.1
Length = 286
Score = 35.7 bits (83), Expect = 0.034
Identities = 19/94 (20%), Positives = 42/94 (44%), Gaps = 12/94 (12%)
Query: 389 RTDGADELELSVVE------NAADSEAAEEMLL-EELKVSRAMSKDFVKVALTVTLKEAI 441
D + L+ S ++ ++ +E+L E+ M+ +FV + T++ A+
Sbjct: 101 AVDLLNMLDKSQKAKYLSLLSSEEAGEIKELLHYEDETAGAIMTTEFVSIVANQTVRSAM 160
Query: 442 ESMKDGQQ-----NCVLVVNGEDFLEGILTYGDI 470
+K+ V VV+ E+ L G+++ D+
Sbjct: 161 YVLKNQADMAETIYYVYVVDQENHLVGVISLRDL 194
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics,
pyrococcus horikoshii OT3, riken structural
genomics/PROT initiative, RSGI; HET: XMP; 2.10A
{Pyrococcus horikoshii} SCOP: c.1.5.1
Length = 486
Score = 35.2 bits (82), Expect = 0.061
Identities = 14/55 (25%), Positives = 31/55 (56%)
Query: 416 EELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDI 470
E V M+K+ + V ++ ++EA++ M + + + + VV+ L G++T D+
Sbjct: 148 EGKLVKELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDL 202
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+
transporter, structural GE PSI-2, protein structure
initiative; 2.41A {Shewanella oneidensis mr-1}
Length = 205
Score = 33.7 bits (78), Expect = 0.10
Identities = 14/92 (15%), Positives = 32/92 (34%), Gaps = 10/92 (10%)
Query: 389 RTDGADELELSVVE------NAADSEAAEEMLL-EELKVSRAMSKDFVKVALTVTLKEAI 441
+ +D L S + + E E ++ R + ++ T+ +A
Sbjct: 18 LIEWSDYLPESFTDRALAQMGERQRQRFELYDQYSENEIGRYTDHQMLVLSDKATVAQAQ 77
Query: 442 ESMKDGQQNC---VLVVNGEDFLEGILTYGDI 470
+ + +C + +V+ D G + DI
Sbjct: 78 RFFRRIELDCNDNLFIVDEADKYLGTVRRYDI 109
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.18A {Thermotoga maritima} SCOP:
c.1.5.1
Length = 494
Score = 33.6 bits (78), Expect = 0.20
Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 26/131 (19%)
Query: 419 KVSRA---MSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLS 475
V + + D + V +T+KEAI+ M + + + VV+ E L G+LT D++
Sbjct: 93 IVKKTENGIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVR---- 148
Query: 476 KLSSDNSKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIK 535
+++ + + T RE+ L+ PD L AKE++ I+
Sbjct: 149 -----------FEKNLSK-KIKDLMT------PREK-LIVAPPDISLEKAKEILHQHRIE 189
Query: 536 QLPVIKRSREL 546
+LP++ + +L
Sbjct: 190 KLPLVSKDNKL 200
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein;
2.30A {Thermus thermophilus} PDB: 2yvz_A
Length = 278
Score = 32.6 bits (75), Expect = 0.28
Identities = 14/74 (18%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 403 NAADSEAAEEMLL-EELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQ-----NCVLVVN 456
+ E + EE + M+ ++V V +T++E + ++ + VV+
Sbjct: 119 DPRTRAEVEALARYEEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVD 178
Query: 457 GEDFLEGILTYGDI 470
+ L+G+L+ D+
Sbjct: 179 EKGRLKGVLSLRDL 192
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel,
oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus}
SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A*
1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Length = 503
Score = 32.5 bits (75), Expect = 0.44
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 417 ELKVSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDI 470
E KVS M+ V L EA + + + + N + +++ + L I+ D
Sbjct: 160 ETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDY 215
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH,
IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio
cholerae o1 biovar el tor}
Length = 496
Score = 32.1 bits (74), Expect = 0.54
Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 26/131 (19%)
Query: 419 KVSRA---MSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLS 475
+V + V V T+ + +E VV + L GI+T D++
Sbjct: 87 QVKIFEAGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVR---- 142
Query: 476 KLSSDNSKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIK 535
+D+ V+++ T +ER L T A +E M ++
Sbjct: 143 -----------FVTDLTK-SVAAVMTP------KER-LATVKEGATGAEVQEKMHKARVE 183
Query: 536 QLPVIKRSREL 546
++ V+ +L
Sbjct: 184 KILVVNDEFQL 194
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.66
Identities = 7/16 (43%), Positives = 9/16 (56%), Gaps = 4/16 (25%)
Query: 266 LY----APSLMIGAAV 277
LY AP+L I A +
Sbjct: 31 LYADDSAPALAIKATM 46
Score = 30.3 bits (67), Expect = 0.89
Identities = 5/26 (19%), Positives = 14/26 (53%), Gaps = 4/26 (15%)
Query: 103 IETVLRPLRAENSPPFTTAMIILASV 128
++ L+ +++P A+ I A++
Sbjct: 25 LQASLKLYADDSAP----ALAIKATM 46
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A
{Thermus thermophilus} PDB: 2yvx_A
Length = 473
Score = 31.5 bits (72), Expect = 0.80
Identities = 15/80 (18%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 397 ELSVVENAADSEAAEEMLL-EELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQ-----N 450
L + + E + EE + M+ ++V V +T++E + ++
Sbjct: 133 RLKDLLDPRTRAEVEALARYEEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIY 192
Query: 451 CVLVVNGEDFLEGILTYGDI 470
+ VV+ + L+G+L+ D+
Sbjct: 193 YIYVVDEKGRLKGVLSLRDL 212
>3qnq_A PTS system, cellobiose-specific IIC component; membrane protein,
transporter, enzyme IIC, phosphoenolpyruva
phosphotransferase system; HET: CBS ZDM MAL CIT; 3.29A
{Bacillus cereus}
Length = 442
Score = 31.1 bits (71), Expect = 1.2
Identities = 19/117 (16%), Positives = 36/117 (30%), Gaps = 5/117 (4%)
Query: 111 RAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLY--LILGMLCG 168
+ + L + + +T V D A L L + M+
Sbjct: 94 EYYKVDALASGALSLVTFLLATPFQVAYIMPGTKESILVDGVIPAALMGSQGLFVAMIIA 153
Query: 169 VVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNV 225
++S + + + IK +PP V + L G I + I+ F +
Sbjct: 154 IIST---EIYRFLVQKKMIIKMPETVPPAVTRSFAALIPGFIVVTVVWIIRLIFEHT 207
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine
nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A
{Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A*
1nf7_A* 1b3o_A* 1nfb_A*
Length = 514
Score = 31.0 bits (71), Expect = 1.3
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 417 ELKVSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIK 471
+S M+ + V VTLKEA E ++ ++ + +VN D L I+ D+K
Sbjct: 172 TTLLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLK 228
>2dcf_A 6-aminohexanoate-dimer hydrolase; HET: ACA MES; 1.40A
{Flavobacterium SP} SCOP: e.3.1.1 PDB: 3a65_A* 1wyc_A
2zm7_A* 2e8i_A* 2zma_A* 3a66_A* 2zm0_A* 1wyb_A 2zm8_A*
2zly_A* 2zm9_A* 2zm2_A*
Length = 392
Score = 30.5 bits (69), Expect = 1.8
Identities = 9/44 (20%), Positives = 17/44 (38%)
Query: 213 RYPGILYWGFTNVEEILHTGKTASAPGIWLLTQLAAAKVVATAL 256
+ P W F ++ E++ + + P LA +A L
Sbjct: 27 QEPPHNRWAFAHLGEMVPSAAVSRRPVNAPGHALARLGAIAAQL 70
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane
protein, transport protein; HET: BOG; 1.65A {Aquifex
aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A*
2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A*
3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A*
3uso_A 3usp_A* 3qs5_A* ...
Length = 519
Score = 30.0 bits (68), Expect = 2.2
Identities = 14/83 (16%), Positives = 22/83 (26%), Gaps = 12/83 (14%)
Query: 161 LILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYW 220
L + + + L DF G+ GL II +
Sbjct: 380 LWTAAIVFFSAHLVMFLNKSLD-EMDFWAGTIGVV------FFGLTELIIFFWI-----F 427
Query: 221 GFTNVEEILHTGKTASAPGIWLL 243
G E ++ G P I+
Sbjct: 428 GADKAWEEINRGGIIKVPRIYYY 450
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid, TIM
barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus
anthracis} PDB: 3tsd_A* 3tsb_A*
Length = 511
Score = 29.8 bits (68), Expect = 3.3
Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 417 ELKVSRAMSKD-FVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDI 470
+K+S M+K+ + + TL EA + ++ + + +V+ L+G++T DI
Sbjct: 174 SIKISDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDI 228
Score = 29.4 bits (67), Expect = 3.9
Identities = 28/133 (21%), Positives = 54/133 (40%), Gaps = 29/133 (21%)
Query: 419 KVSRA---MSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDF--LEGILTYGDIKRC 473
KV R+ + D + + +A M + + V VVN D L GI+T D++
Sbjct: 111 KVKRSESGVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMR-- 168
Query: 474 LSKLSSDNSKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKG 533
D + +S + T+ L+T T L+ A+++++
Sbjct: 169 -------------FIQDYSI-KISDVMTK--------EQLITAPVGTTLSEAEKILQKYK 206
Query: 534 IKQLPVIKRSREL 546
I++LP++ + L
Sbjct: 207 IEKLPLVDNNGVL 219
>2r0x_A Possible flavin reductase; split barrel-like, structural genomics,
joint center for STR genomics, JCSG, protein structure
initiative; HET: MSE SO4; 1.06A {Haemophilus somnus
129PT}
Length = 158
Score = 28.3 bits (64), Expect = 4.3
Identities = 14/83 (16%), Positives = 32/83 (38%), Gaps = 13/83 (15%)
Query: 308 VGMAATLASVCSVPLTSVLLLFELTRDYRILLPLMGAVGLAIWVPSVANQAKETDASDKR 367
G A+ +VCSV + LL + + R + L + + +++
Sbjct: 31 HGFTAS--AVCSVTDSPPTLLVCINSNARAYEHFVKNRVLMV---NTL-------TAEQS 78
Query: 368 TLARGYSSLSPMEDK-NEVLWRR 389
+L+ ++S E++ + W
Sbjct: 79 SLSNIFASPLSQEERFSNASWTT 101
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains,
oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes}
SCOP: c.1.5.1 d.37.1.1
Length = 491
Score = 29.4 bits (67), Expect = 4.3
Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 417 ELKVSRAMSKD-FVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDI 470
+S M+ + V A+ L+ A + + + + +V+ L G++T DI
Sbjct: 151 NAPISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDI 205
Score = 28.2 bits (64), Expect = 8.1
Identities = 29/127 (22%), Positives = 49/127 (38%), Gaps = 29/127 (22%)
Query: 419 KVSRA---MSKDFVKVALTVTLKEAIESMKDGQQNCVLVVN--GEDFLEGILTYGDIKRC 473
KV R+ + D + + EA E M+ + + V +V L GI+T D++
Sbjct: 88 KVKRSENGVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMR-- 145
Query: 474 LSKLSSDNSKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKG 533
SD N +S T L+T TDL A+ ++
Sbjct: 146 -------------FISDYNA-PISEHMTS--------EHLVTAAVGTDLETAERILHEHR 183
Query: 534 IKQLPVI 540
I++LP++
Sbjct: 184 IEKLPLV 190
>1vlu_A Gamma-glutamyl phosphate reductase; YOR323C, structural GENO JCSG,
protein structure initiative, PSI, joint center for S
genomics; 2.29A {Saccharomyces cerevisiae} SCOP:
c.82.1.1
Length = 468
Score = 29.1 bits (66), Expect = 4.8
Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 26/98 (26%)
Query: 354 VANQAKETDASDKRTLARGYSSLSPMEDKNEVLWRRTDGADELELS----VVENAADSEA 409
+A A++ A L E ++++L D L+ + N D
Sbjct: 19 IAKNARK--AG--NILKT-----ISNEGRSDIL---YKIHDALKANAHAIEEANKIDLAV 66
Query: 410 AEEMLLEELKVSRAMSKDFVKVALTVTLKEAIESMKDG 447
A+E L + + R L + + E M G
Sbjct: 67 AKETGLADSLLKR----------LDLFKGDKFEVMLQG 94
>3mlg_A Putative uncharacterized protein, linker, putativ uncharacterized
protein; knot, designed protein, fusion protein, chimera
protein; 2.29A {Helicobacter pylori}
Length = 189
Score = 28.5 bits (63), Expect = 5.0
Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 374 SSLSPMEDKNEVLWRRTDGADELELSVVENAADSEAAEEMLLEELKVSRAMSKDFVKVAL 433
SS +P++ N++++ + + EL E + A E +E+ + + +
Sbjct: 99 SSGNPLDKWNDIIFHASKKLSKKEL---ERLLELLALLETFIEKEDLEEKFESFAKALRI 155
Query: 434 TVTLKEAIESMKD 446
L++ IES K
Sbjct: 156 DEELQQKIESRKT 168
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus,
glycoprotein, membran structural genomics, PSI-2,
protein structure initiative; HET: BOG; 2.10A {Homo
sapiens}
Length = 490
Score = 29.1 bits (65), Expect = 5.1
Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 16/115 (13%)
Query: 161 LILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVV--------CPALGGLGAGIIAL 212
LI+G +CG++S + F F++ + + +GG+ + A
Sbjct: 312 LIIGFVCGIISTLG------FVYLTPFLESRLHIQDTCGINNLHGIPGIIGGIVGAVTAA 365
Query: 213 RYPGILYWGFTNVEEILHTGKTAS-APGIWLLTQLAAAKVVATALCKGSGLVGGL 266
+Y V G Q+ +V A+ G++ GL
Sbjct: 366 SASLEVYGKEGLVHSFDFQGFNGDWTARTQGKFQIYGL-LVTLAMALMGGIIVGL 419
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.385
Gapped
Lambda K H
0.267 0.0848 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,944,467
Number of extensions: 568128
Number of successful extensions: 1646
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1529
Number of HSP's successfully gapped: 143
Length of query: 593
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 494
Effective length of database: 3,937,614
Effective search space: 1945181316
Effective search space used: 1945181316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.7 bits)