BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007691
         (593 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3H32|B Chain B, Crystal Structure Of D-Dimer From Human Fibrin Complexed
           With Gly-His- Arg-Pro-Tyr-Amide
 pdb|3H32|E Chain E, Crystal Structure Of D-Dimer From Human Fibrin Complexed
           With Gly-His- Arg-Pro-Tyr-Amide
          Length = 458

 Score = 29.6 bits (65), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 193 DTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLM----DILSRHSEVVYNQSKEIAASQ 248
           + LLQ    I +S+D +++ V+ V+QT+      M    D+  +  + V +    +    
Sbjct: 84  EALLQQERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDNENVVNEYS 143

Query: 249 TELQEGQVRIKEKLDEGMAT 268
           +EL++ Q+ I E ++  + T
Sbjct: 144 SELEKHQLYIDETVNSNIPT 163


>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
           Reveals Structural Similarities To Importin Alpha.
 pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
           Reveals Structural Similarities To Importin Alpha
          Length = 388

 Score = 29.6 bits (65), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 11/132 (8%)

Query: 157 QLQAHGFQYETERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDS---IDHRV 213
           +LQ H F      L N LK+     E      E+  +T L+      DSL++   I    
Sbjct: 265 ELQPH-FPDAYCNLANALKEKGSVAE-----AEDCYNTALRLCPTHADSLNNLANIKREQ 318

Query: 214 QNVAQTAKGVRDLMDILSRHSEVVYNQSKEIAASQTELQEGQVRIKEKLDEGMATLIDAY 273
            N+ +  +  R  +++    +    N +  +   Q +LQE  +  KE +     T  DAY
Sbjct: 319 GNIEEAVRLYRKALEVFPEFAAAHSNLAS-VLQQQGKLQEALMHYKEAIRIS-PTFADAY 376

Query: 274 SNLGKEVNNLRD 285
           SN+G  +  ++D
Sbjct: 377 SNMGNTLKEMQD 388


>pdb|3GHG|B Chain B, Crystal Structure Of Human Fibrinogen
 pdb|3GHG|E Chain E, Crystal Structure Of Human Fibrinogen
 pdb|3GHG|H Chain H, Crystal Structure Of Human Fibrinogen
 pdb|3GHG|K Chain K, Crystal Structure Of Human Fibrinogen
          Length = 461

 Score = 29.6 bits (65), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 193 DTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLM----DILSRHSEVVYNQSKEIAASQ 248
           + LLQ    I +S+D +++ V+ V+QT+      M    D+  +  + V +    +    
Sbjct: 84  EALLQQERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDNENVVNEYS 143

Query: 249 TELQEGQVRIKEKLDEGMAT 268
           +EL++ Q+ I E ++  + T
Sbjct: 144 SELEKHQLYIDETVNSNIPT 163


>pdb|2Q6T|A Chain A, Crystal Structure Of The Thermus Aquaticus Dnab Monomer
 pdb|2Q6T|B Chain B, Crystal Structure Of The Thermus Aquaticus Dnab Monomer
 pdb|2Q6T|C Chain C, Crystal Structure Of The Thermus Aquaticus Dnab Monomer
 pdb|2Q6T|D Chain D, Crystal Structure Of The Thermus Aquaticus Dnab Monomer
          Length = 444

 Score = 29.6 bits (65), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 55/126 (43%), Gaps = 19/126 (15%)

Query: 171 VNELKKSADYTEHKLEIIEEK--SDTLLQSSNQ-----------IHDSLDSIDHRVQNVA 217
           ++E   +A Y EH   I+ EK     L+Q++ +           + + LD+   ++  VA
Sbjct: 89  LSEATPTAAYAEHYARIVAEKWTLRRLIQAAGEAMRLAYEEAGSLDEILDTAGKKILEVA 148

Query: 218 QT-----AKGVRDLMDILSRHSEVVYNQSKEIAASQTELQEGQVRIKEKLDEGMATLIDA 272
            T     A+ +R+L+     H E ++    E+A  +T  +E    I   L  G   +I A
Sbjct: 149 LTKTDTEARPMRELVHETFEHIEALFQNKGEVAGVRTGFKELDQLIG-TLGPGSLNIIAA 207

Query: 273 YSNLGK 278
              +GK
Sbjct: 208 RPAMGK 213


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.132    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,252,653
Number of Sequences: 62578
Number of extensions: 582505
Number of successful extensions: 1482
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1475
Number of HSP's gapped (non-prelim): 23
length of query: 593
length of database: 14,973,337
effective HSP length: 104
effective length of query: 489
effective length of database: 8,465,225
effective search space: 4139495025
effective search space used: 4139495025
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)