Query 007691
Match_columns 593
No_of_seqs 94 out of 96
Neff 4.4
Searched_HMMs 46136
Date Thu Mar 28 14:02:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007691.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007691hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04163 Tht1: Tht1-like nucle 99.4 1.3E-07 2.8E-12 105.5 48.4 105 72-179 59-169 (544)
2 smart00283 MA Methyl-accepting 96.0 1.7 3.7E-05 42.3 28.6 19 279-297 134-152 (262)
3 KOG0810 SNARE protein Syntaxin 95.3 4.9 0.00011 42.8 23.6 90 301-391 132-227 (297)
4 PRK15048 methyl-accepting chem 95.3 6.5 0.00014 44.0 30.3 6 280-285 401-406 (553)
5 PRK15041 methyl-accepting chem 94.0 13 0.00029 42.0 28.4 13 15-27 21-33 (554)
6 KOG4812 Golgi-associated prote 93.6 0.08 1.7E-06 54.5 4.3 76 426-509 166-245 (262)
7 PRK09793 methyl-accepting prot 93.5 16 0.00034 41.1 25.7 85 276-364 395-479 (533)
8 smart00283 MA Methyl-accepting 91.6 14 0.00031 36.0 26.4 10 349-358 214-223 (262)
9 PF10168 Nup88: Nuclear pore c 91.3 4.4 9.5E-05 47.9 15.1 65 146-210 539-606 (717)
10 PF07464 ApoLp-III: Apolipopho 90.9 1.5 3.2E-05 42.6 9.1 59 244-305 72-130 (155)
11 PF10168 Nup88: Nuclear pore c 88.8 18 0.00039 42.9 17.5 35 155-189 537-571 (717)
12 PF00015 MCPsignal: Methyl-acc 88.4 24 0.00052 33.7 20.9 25 171-195 18-42 (213)
13 PF10498 IFT57: Intra-flagella 88.4 12 0.00025 41.0 14.5 19 158-176 191-209 (359)
14 KOG0972 Huntingtin interacting 88.1 8.5 0.00019 41.2 12.7 142 159-300 199-364 (384)
15 PRK15048 methyl-accepting chem 88.0 51 0.0011 37.0 26.4 46 319-364 436-481 (553)
16 PRK11637 AmiB activator; Provi 87.4 50 0.0011 36.3 28.8 36 351-386 189-224 (428)
17 PRK09793 methyl-accepting prot 87.2 57 0.0012 36.7 30.4 11 310-320 408-418 (533)
18 PRK11637 AmiB activator; Provi 87.2 52 0.0011 36.2 24.9 17 133-149 10-26 (428)
19 COG1196 Smc Chromosome segrega 85.9 1E+02 0.0022 38.5 30.2 239 166-411 776-1029(1163)
20 PF14662 CCDC155: Coiled-coil 85.4 45 0.00098 33.8 22.3 111 174-292 20-130 (193)
21 KOG0994 Extracellular matrix g 85.3 1.2E+02 0.0025 38.5 28.2 50 352-404 1604-1653(1758)
22 COG1842 PspA Phage shock prote 83.1 60 0.0013 33.4 17.8 104 193-296 27-131 (225)
23 KOG0994 Extracellular matrix g 83.0 1.4E+02 0.0031 37.7 29.7 10 63-72 1354-1363(1758)
24 PRK15041 methyl-accepting chem 82.2 96 0.0021 35.2 26.5 118 276-401 399-516 (554)
25 TIGR00996 Mtu_fam_mce virulenc 81.9 56 0.0012 33.6 15.4 54 178-231 166-219 (291)
26 PF04012 PspA_IM30: PspA/IM30 81.8 58 0.0013 32.4 20.3 36 261-296 95-130 (221)
27 PF01442 Apolipoprotein: Apoli 80.8 48 0.001 30.8 23.0 9 261-269 64-72 (202)
28 KOG0996 Structural maintenance 80.1 1.8E+02 0.0038 36.9 32.4 171 139-313 302-500 (1293)
29 PF05478 Prominin: Prominin; 78.8 1.6E+02 0.0034 35.5 40.0 57 141-197 145-201 (806)
30 KOG0971 Microtubule-associated 77.9 1.9E+02 0.004 35.9 29.6 51 157-207 264-314 (1243)
31 PF10498 IFT57: Intra-flagella 77.0 62 0.0013 35.5 14.3 37 135-171 190-226 (359)
32 PF06008 Laminin_I: Laminin Do 76.6 96 0.0021 31.9 25.6 96 164-259 40-140 (264)
33 TIGR02132 phaR_Bmeg polyhydrox 75.7 94 0.002 31.4 16.6 80 163-242 16-103 (189)
34 KOG0804 Cytoplasmic Zn-finger 74.0 1.1E+02 0.0025 34.7 15.4 100 265-382 348-447 (493)
35 PRK10698 phage shock protein P 73.9 1.1E+02 0.0024 31.2 20.4 35 262-296 97-131 (222)
36 KOG0979 Structural maintenance 71.2 2.7E+02 0.0059 34.7 21.5 79 147-225 136-223 (1072)
37 PF04849 HAP1_N: HAP1 N-termin 71.0 1.6E+02 0.0035 31.9 16.1 85 214-317 206-290 (306)
38 PF10267 Tmemb_cc2: Predicted 70.9 1.8E+02 0.0039 32.5 23.2 26 416-441 321-349 (395)
39 PF07464 ApoLp-III: Apolipopho 70.2 82 0.0018 30.8 11.9 35 275-309 71-105 (155)
40 COG5185 HEC1 Protein involved 69.7 2.2E+02 0.0047 32.9 18.2 148 160-318 273-429 (622)
41 PF08317 Spc7: Spc7 kinetochor 69.4 1.6E+02 0.0036 31.4 18.1 54 143-196 119-176 (325)
42 TIGR02977 phageshock_pspA phag 68.6 1.4E+02 0.003 30.2 15.3 38 260-297 95-132 (219)
43 PF04977 DivIC: Septum formati 68.6 1.1 2.3E-05 37.2 -1.1 39 494-533 2-40 (80)
44 PF10176 DUF2370: Protein of u 67.5 12 0.00026 38.8 5.9 76 426-508 93-215 (233)
45 KOG2196 Nuclear porin [Nuclear 65.5 1.6E+02 0.0035 31.0 13.5 87 182-278 112-199 (254)
46 KOG0250 DNA repair protein RAD 65.2 3.6E+02 0.0079 33.9 28.3 35 235-269 312-346 (1074)
47 PF00015 MCPsignal: Methyl-acc 64.2 1.4E+02 0.0029 28.6 21.4 26 271-296 75-100 (213)
48 TIGR02169 SMC_prok_A chromosom 62.4 3.6E+02 0.0077 32.8 36.5 30 166-195 174-203 (1164)
49 KOG0933 Structural maintenance 62.0 4.1E+02 0.0089 33.4 19.1 154 193-362 818-971 (1174)
50 PF05667 DUF812: Protein of un 61.6 3.3E+02 0.0071 32.1 22.7 72 350-421 448-521 (594)
51 KOG3850 Predicted membrane pro 61.1 2.8E+02 0.0061 31.2 21.4 49 236-291 264-312 (455)
52 PF03882 KicB: KicB killing fa 60.3 3E+02 0.0064 31.2 16.1 75 152-231 109-193 (440)
53 PRK10361 DNA recombination pro 59.6 3.2E+02 0.007 31.4 18.9 17 300-316 169-185 (475)
54 TIGR00996 Mtu_fam_mce virulenc 59.1 1.9E+02 0.0042 29.7 13.1 49 211-259 185-233 (291)
55 PF10828 DUF2570: Protein of u 58.1 77 0.0017 28.8 8.8 11 409-419 100-110 (110)
56 PF03908 Sec20: Sec20; InterP 57.8 1.3E+02 0.0028 26.3 12.5 11 433-443 77-87 (92)
57 PF10146 zf-C4H2: Zinc finger- 57.7 1.7E+02 0.0037 30.3 12.2 28 260-287 77-104 (230)
58 PF04912 Dynamitin: Dynamitin 57.0 1.5E+02 0.0032 32.4 12.3 44 253-296 343-386 (388)
59 KOG3850 Predicted membrane pro 56.2 3.4E+02 0.0074 30.6 18.1 19 260-278 270-288 (455)
60 PF10392 COG5: Golgi transport 55.6 1.8E+02 0.0038 27.1 13.2 66 208-281 30-96 (132)
61 PRK05260 condesin subunit F; P 55.5 3.6E+02 0.0077 30.6 15.7 77 151-232 108-194 (440)
62 PHA02562 46 endonuclease subun 55.0 3.5E+02 0.0076 30.3 26.3 16 514-529 510-525 (562)
63 PF09753 Use1: Membrane fusion 54.7 1.3E+02 0.0028 30.9 10.8 23 397-419 201-223 (251)
64 COG3206 GumC Uncharacterized p 53.2 3.6E+02 0.0078 30.0 23.0 21 279-299 286-306 (458)
65 PLN03223 Polycystin cation cha 49.4 4.8E+02 0.01 34.0 15.8 30 203-232 777-806 (1634)
66 TIGR02169 SMC_prok_A chromosom 48.8 5.8E+02 0.013 31.1 37.5 6 491-496 575-580 (1164)
67 KOG2150 CCR4-NOT transcription 48.7 3.9E+02 0.0085 31.4 14.2 136 248-402 3-143 (575)
68 KOG0163 Myosin class VI heavy 47.2 6.4E+02 0.014 31.1 21.0 43 157-199 826-870 (1259)
69 PF08172 CASP_C: CASP C termin 46.3 3.7E+02 0.008 28.1 13.2 50 244-296 83-132 (248)
70 COG4942 Membrane-bound metallo 46.3 4.9E+02 0.011 29.5 21.6 156 230-419 40-206 (420)
71 PRK04778 septation ring format 46.3 5.2E+02 0.011 29.8 21.1 196 164-367 305-511 (569)
72 TIGR00606 rad50 rad50. This fa 45.6 7.6E+02 0.017 31.5 31.0 14 115-128 675-688 (1311)
73 PF08285 DPM3: Dolichol-phosph 45.5 57 0.0012 29.2 5.7 48 480-531 39-86 (91)
74 TIGR02209 ftsL_broad cell divi 44.4 19 0.00042 30.4 2.5 16 552-567 48-63 (85)
75 COG1511 Predicted membrane pro 43.7 6.6E+02 0.014 30.3 16.0 39 168-206 170-208 (780)
76 KOG1916 Nuclear protein, conta 43.1 7.9E+02 0.017 31.0 21.2 125 156-311 867-997 (1283)
77 PF10186 Atg14: UV radiation r 42.9 3.7E+02 0.0081 27.2 19.5 14 404-417 146-159 (302)
78 KOG0804 Cytoplasmic Zn-finger 42.6 5.8E+02 0.013 29.4 14.8 54 272-329 404-457 (493)
79 PF05802 EspB: Enterobacterial 42.5 2.6E+02 0.0056 30.2 10.7 68 251-318 237-305 (317)
80 PF09074 Mer2: Mer2; InterPro 42.2 3.9E+02 0.0085 27.2 13.8 32 254-285 38-69 (190)
81 PF06419 COG6: Conserved oligo 41.7 6.4E+02 0.014 29.6 18.7 178 248-533 22-204 (618)
82 PF11932 DUF3450: Protein of u 41.4 4.1E+02 0.0088 27.2 16.3 93 165-264 24-116 (251)
83 PF03904 DUF334: Domain of unk 40.9 4.5E+02 0.0097 27.6 13.4 34 171-204 45-78 (230)
84 PRK13108 prolipoprotein diacyl 40.7 1E+02 0.0022 35.1 8.1 25 454-478 222-246 (460)
85 PF10186 Atg14: UV radiation r 40.3 4.1E+02 0.0089 26.9 17.9 12 335-346 148-159 (302)
86 cd07599 BAR_Rvs167p The Bin/Am 40.0 3.9E+02 0.0085 26.6 22.1 54 276-330 98-152 (216)
87 PRK04863 mukB cell division pr 39.4 1E+03 0.022 31.3 30.3 28 374-401 586-613 (1486)
88 PRK10884 SH3 domain-containing 39.3 4E+02 0.0087 27.1 11.3 31 266-296 134-164 (206)
89 KOG0933 Structural maintenance 38.1 9.4E+02 0.02 30.5 26.3 61 376-436 824-884 (1174)
90 PF07889 DUF1664: Protein of u 37.9 2.9E+02 0.0063 26.3 9.4 22 207-228 31-53 (126)
91 KOG3208 SNARE protein GS28 [In 37.4 5.1E+02 0.011 27.2 16.9 44 377-420 142-192 (231)
92 TIGR00606 rad50 rad50. This fa 37.2 1E+03 0.022 30.5 32.5 12 75-86 661-672 (1311)
93 KOG0517 Beta-spectrin [Cytoske 37.1 1.3E+03 0.027 31.6 21.9 55 360-414 1758-1815(2473)
94 COG3883 Uncharacterized protei 37.1 5.5E+02 0.012 27.4 22.8 29 280-308 82-110 (265)
95 TIGR02131 phaP_Bmeg polyhydrox 36.8 4.2E+02 0.0091 26.0 13.8 70 174-243 23-103 (165)
96 KOG2148 Exocyst protein Sec3 [ 36.7 4.4E+02 0.0094 31.8 12.2 122 166-288 215-351 (867)
97 PF03904 DUF334: Domain of unk 36.4 5.3E+02 0.011 27.1 23.2 42 228-269 46-87 (230)
98 PF09403 FadA: Adhesion protei 35.5 4E+02 0.0086 25.4 11.9 10 321-330 107-116 (126)
99 PF11902 DUF3422: Protein of u 35.2 7.1E+02 0.015 28.2 19.1 114 335-464 284-402 (420)
100 PF05251 UPF0197: Uncharacteri 35.2 72 0.0016 28.0 4.6 38 430-467 25-62 (77)
101 KOG0980 Actin-binding protein 34.9 9.9E+02 0.022 29.8 25.0 202 164-392 332-537 (980)
102 PF09726 Macoilin: Transmembra 34.6 8.9E+02 0.019 29.2 23.0 70 278-354 538-609 (697)
103 PF06120 Phage_HK97_TLTM: Tail 34.6 6.3E+02 0.014 27.4 21.7 61 235-295 44-105 (301)
104 COG1580 FliL Flagellar basal b 34.4 32 0.0007 33.6 2.6 47 10-56 25-73 (159)
105 PF04799 Fzo_mitofusin: fzo-li 34.2 2.1E+02 0.0046 28.6 8.2 27 273-299 139-165 (171)
106 PF10393 Matrilin_ccoil: Trime 33.5 1.1E+02 0.0024 24.5 5.0 31 161-191 15-45 (47)
107 COG5283 Phage-related tail pro 33.4 1.2E+03 0.025 30.1 22.3 188 217-412 21-215 (1213)
108 PF14992 TMCO5: TMCO5 family 33.1 6.5E+02 0.014 27.1 22.3 51 350-400 110-160 (280)
109 PHA03247 large tegument protei 32.4 1.7E+03 0.036 31.6 30.6 38 406-443 1832-1870(3151)
110 cd07599 BAR_Rvs167p The Bin/Am 31.6 5.3E+02 0.012 25.6 20.9 30 290-319 87-116 (216)
111 PF12097 DUF3573: Protein of u 31.5 86 0.0019 34.6 5.4 42 492-533 9-58 (383)
112 TIGR02131 phaP_Bmeg polyhydrox 31.4 5.1E+02 0.011 25.4 10.1 21 158-178 85-105 (165)
113 PF12128 DUF3584: Protein of u 31.2 1.2E+03 0.026 29.6 31.3 13 109-121 169-181 (1201)
114 PF14662 CCDC155: Coiled-coil 31.1 5.9E+02 0.013 26.0 22.5 114 180-297 5-121 (193)
115 PF06103 DUF948: Bacterial pro 31.0 3.4E+02 0.0074 23.3 8.4 23 173-195 23-45 (90)
116 PF03631 Virul_fac_BrkB: Virul 30.9 4.7E+02 0.01 26.3 10.4 86 407-508 91-183 (260)
117 COG0840 Tar Methyl-accepting c 30.9 6.6E+02 0.014 26.5 28.4 24 274-297 274-297 (408)
118 PF03342 Rhabdo_M1: Rhabdoviru 30.5 2.8E+02 0.0061 28.4 8.4 58 355-415 76-133 (219)
119 COG4842 Uncharacterized protei 30.4 3.5E+02 0.0077 24.0 8.3 33 267-299 50-82 (97)
120 COG1579 Zn-ribbon protein, pos 30.1 6.7E+02 0.015 26.3 18.3 40 267-310 41-80 (239)
121 PF13748 ABC_membrane_3: ABC t 29.7 4.7E+02 0.01 27.5 10.2 42 428-471 45-86 (237)
122 PLN03094 Substrate binding sub 29.7 8.2E+02 0.018 27.2 14.6 16 171-186 248-263 (370)
123 TIGR02736 cbb3_Q_epsi cytochro 29.6 55 0.0012 27.2 2.8 29 491-519 4-41 (56)
124 KOG0161 Myosin class II heavy 29.5 1.6E+03 0.035 30.5 33.3 20 212-231 1316-1335(1930)
125 PF04582 Reo_sigmaC: Reovirus 29.3 89 0.0019 34.1 5.1 49 181-229 33-81 (326)
126 PF11932 DUF3450: Protein of u 28.7 6.5E+02 0.014 25.7 13.2 45 184-228 22-66 (251)
127 smart00787 Spc7 Spc7 kinetocho 28.6 7.8E+02 0.017 26.6 18.1 24 235-258 211-234 (312)
128 PLN03223 Polycystin cation cha 28.5 5.5E+02 0.012 33.5 12.0 38 211-248 771-808 (1634)
129 PF11887 DUF3407: Protein of u 27.9 7.2E+02 0.016 26.0 15.4 65 187-251 39-103 (267)
130 cd00179 SynN Syntaxin N-termin 27.9 4.8E+02 0.01 23.9 12.4 37 297-333 93-129 (151)
131 PF07926 TPR_MLP1_2: TPR/MLP1/ 27.6 5E+02 0.011 24.1 17.7 14 323-336 117-130 (132)
132 PF08317 Spc7: Spc7 kinetochor 27.6 7.8E+02 0.017 26.3 24.4 71 256-330 148-218 (325)
133 cd07610 FCH_F-BAR The Extended 27.6 5.4E+02 0.012 24.4 20.5 36 166-201 8-43 (191)
134 KOG3759 Uncharacterized RUN do 27.6 2.7E+02 0.0059 32.1 8.5 113 175-297 130-246 (621)
135 KOG0946 ER-Golgi vesicle-tethe 27.1 1.3E+03 0.028 28.7 23.2 64 367-431 810-881 (970)
136 KOG2391 Vacuolar sorting prote 26.6 2.3E+02 0.0051 31.3 7.6 21 2-22 21-42 (365)
137 PF13166 AAA_13: AAA domain 26.5 1.1E+03 0.023 27.5 21.8 35 114-151 246-281 (712)
138 KOG0996 Structural maintenance 26.5 1.5E+03 0.033 29.3 26.5 27 74-105 706-732 (1293)
139 PF09602 PhaP_Bmeg: Polyhydrox 26.5 6.6E+02 0.014 25.1 18.5 55 263-319 47-101 (165)
140 PF05600 DUF773: Protein of un 26.2 7.1E+02 0.015 28.7 11.8 21 276-296 472-492 (507)
141 COG4477 EzrA Negative regulato 25.9 1.1E+03 0.025 27.7 21.3 30 253-282 319-348 (570)
142 smart00511 ORANGE Orange domai 25.9 43 0.00094 25.5 1.6 37 74-113 6-42 (45)
143 PF04849 HAP1_N: HAP1 N-termin 25.1 9.2E+02 0.02 26.3 21.8 31 266-296 169-199 (306)
144 KOG0243 Kinesin-like protein [ 25.0 1.5E+03 0.033 28.8 28.3 68 270-337 721-792 (1041)
145 KOG0612 Rho-associated, coiled 24.7 1.6E+03 0.035 29.1 26.8 17 509-525 789-805 (1317)
146 PF10174 Cast: RIM-binding pro 24.4 1.4E+03 0.03 28.1 19.6 76 339-414 118-202 (775)
147 PF15254 CCDC14: Coiled-coil d 24.1 1.1E+03 0.024 29.0 12.9 110 199-308 440-559 (861)
148 PRK04654 sec-independent trans 23.8 3.8E+02 0.0082 27.8 8.1 18 214-231 23-40 (214)
149 PF08824 Serine_rich: Serine r 23.8 87 0.0019 30.8 3.5 30 256-285 76-105 (159)
150 PF01608 I_LWEQ: I/LWEQ domain 23.7 7.1E+02 0.015 24.5 13.7 23 366-388 121-143 (152)
151 PF14735 HAUS4: HAUS augmin-li 23.4 8.6E+02 0.019 25.4 15.8 31 271-302 202-232 (238)
152 PF14362 DUF4407: Domain of un 23.2 8.7E+02 0.019 25.3 16.8 13 409-421 243-255 (301)
153 KOG0976 Rho/Rac1-interacting s 22.4 1.6E+03 0.034 28.1 26.8 99 218-317 77-180 (1265)
154 PRK13428 F0F1 ATP synthase sub 22.3 1.1E+03 0.025 26.4 15.8 20 444-463 223-242 (445)
155 PF04136 Sec34: Sec34-like fam 22.0 7.3E+02 0.016 24.0 10.5 50 170-219 15-64 (157)
156 PRK10780 periplasmic chaperone 21.6 7.2E+02 0.016 23.8 12.2 11 305-315 70-80 (165)
157 KOG0639 Transducin-like enhanc 21.5 4.1E+02 0.0088 31.2 8.5 37 260-296 26-62 (705)
158 PF15050 SCIMP: SCIMP protein 21.5 1.4E+02 0.003 28.6 4.2 52 482-533 7-58 (133)
159 cd07597 BAR_SNX8 The Bin/Amphi 21.3 9.1E+02 0.02 24.9 21.7 38 406-443 188-225 (246)
160 TIGR02231 conserved hypothetic 21.3 1E+03 0.023 26.9 11.9 19 340-358 129-147 (525)
161 PRK11166 chemotaxis regulator 21.1 8E+02 0.017 25.4 9.9 77 172-248 60-139 (214)
162 KOG0962 DNA repair protein RAD 21.1 1.9E+03 0.042 28.6 28.8 110 220-330 870-983 (1294)
163 PLN03094 Substrate binding sub 20.9 1.2E+03 0.026 26.0 12.3 55 173-228 260-314 (370)
164 PF15188 CCDC-167: Coiled-coil 20.8 6.1E+02 0.013 22.7 8.0 17 376-395 56-72 (85)
165 KOG3385 V-SNARE [Intracellular 20.6 5.5E+02 0.012 24.4 7.8 29 300-332 40-68 (118)
166 TIGR03752 conj_TIGR03752 integ 20.3 1E+03 0.022 27.6 11.3 31 168-198 58-88 (472)
167 PF11221 Med21: Subunit 21 of 20.2 4.3E+02 0.0093 25.1 7.4 49 215-263 77-125 (144)
168 KOG4460 Nuclear pore complex, 20.2 1.5E+03 0.033 27.0 16.9 72 129-201 557-641 (741)
169 PF01519 DUF16: Protein of unk 20.2 5.8E+02 0.013 23.7 7.7 35 276-310 58-92 (102)
No 1
>PF04163 Tht1: Tht1-like nuclear fusion protein ; InterPro: IPR007292 Nuclear fusion protein KAR5 is an integral membrane protein that is thought to be required for the fusion of nuclear envelopes during karyogamy.
Probab=99.36 E-value=1.3e-07 Score=105.47 Aligned_cols=105 Identities=20% Similarity=0.383 Sum_probs=83.0
Q ss_pred cCCCCchHHHHHHHHhccc---hhhhhcHHHHHHHHHHhhcchhhhcCCCCCC-CCCCcccHhHhhhcC--ChHHHHHHH
Q 007691 72 LIGSNACWQNAYRHLFAGC---SEIIAIEEKRSRFAWHLSDCFQKDSGRPAFP-NCDQKSAMINCLKKI--DDEEHKIYL 145 (593)
Q Consensus 72 l~~~~~CW~~Al~~L~~~C---~~L~~~de~qSrLAl~LtNC~le~SGR~~fp-~C~~~~si~~Ct~~M--dd~af~vY~ 145 (593)
+...+.|++.|+..+-+.| ....+-| .|.+.|++|+-|.++.+|- .+| .|.. .++..|+..| ++..|.+|+
T Consensus 59 l~~~s~C~~~A~~~l~~~C~~~~g~esid-~rv~~Ai~LsiCEle~a~~-~iP~~C~~-~~~~~Cl~~L~~s~q~Wttys 135 (544)
T PF04163_consen 59 LFLKSSCHRDALRSLIPQCQLLDGVESID-DRVSSAIKLSICELENAGI-EIPSECSP-GSLDSCLRALESSPQWWTTYS 135 (544)
T ss_pred hccCCcHHHHHHHHHHHhhcCCCCcccHH-HHHHHHHHHHhhhcccCCC-CCCcccCc-ccHHHHHHHhcCCcHHHHhhh
Confidence 3467899999999999999 2222223 7888899999999999996 344 5888 6799999988 589999999
Q ss_pred HHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHhHH
Q 007691 146 AFLLETNSICYQLQAHGFQYETERLVNELKKSAD 179 (593)
Q Consensus 146 eF~~ht~sIC~~Lq~q~fq~~TE~tVnkL~~sS~ 179 (593)
-+|.++..||+..+....+++.=.+-..+.+...
T Consensus 136 ~~~~~~~~iC~a~r~~~eKeqiL~ly~niT~v~~ 169 (544)
T PF04163_consen 136 GYYQNALVICHAARLPYEKEQILELYQNITEVYS 169 (544)
T ss_pred hhHhhHHHHHHHccCchhHHHHHHHHHHHHHHHH
Confidence 9999999999999988777765444444444433
No 2
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=95.99 E-value=1.7 Score=42.33 Aligned_cols=19 Identities=37% Similarity=0.468 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 007691 279 EVNNLRDEAIEIEKEISKA 297 (593)
Q Consensus 279 ~~ekl~~~t~~i~~ei~~~ 297 (593)
++..|.+.+...-.+|.++
T Consensus 134 ~I~~la~~t~~~~~ev~~~ 152 (262)
T smart00283 134 EVRKLAERSAESAKEIESL 152 (262)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444333333333333
No 3
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.31 E-value=4.9 Score=42.82 Aligned_cols=90 Identities=18% Similarity=0.295 Sum_probs=70.9
Q ss_pred hhhhhHHHHHHHhhhhhhhhcchHHHHHHhhchhhHHHhhH------HHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHH
Q 007691 301 MFSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQSTALESLQ------LLTKFQSEALAESRNTLQELAEYGHKQQEELLK 374 (593)
Q Consensus 301 l~~~m~~lq~~a~~I~~~~~~SLenQ~~LL~gQ~~a~~~L~------~l~~~q~~aleesr~t~q~la~~~~~qqeell~ 374 (593)
+-..|+.++..-.++-....+.++.|-..-.|+...-+.+. +...|..+|+..+-...+.|+|.-.|+. ++..
T Consensus 132 f~~~M~~f~~~~~~~r~~~k~~i~Rql~i~~~~~~~de~ie~~ie~g~~~~f~~~~i~~~~~~~~~l~Eiq~Rh~-~ik~ 210 (297)
T KOG0810|consen 132 LKELMNEFNRTQSKYREEYKERIQRQLFIVGGEETTDEEIEEMIESGGSEVFTQKAIQDRGQAKQTLAEIQERHD-EIKK 210 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcCChHHHHHHHHCCChHHHHHHHHHHhhhhHHHHHHHHHHHH-HHHH
Confidence 44567788888888888888899999888888554444444 6777888999888888888998866665 7889
Q ss_pred HHHHHHHHHHHhhhchH
Q 007691 375 RQEQLQEVHDHLFKNSR 391 (593)
Q Consensus 375 ~q~ql~~~h~~l~~~s~ 391 (593)
..+.|++.|+-++++.-
T Consensus 211 LEksi~ELhqlFlDMa~ 227 (297)
T KOG0810|consen 211 LEKSIRELHQLFLDMAV 227 (297)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998877653
No 4
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=95.27 E-value=6.5 Score=43.98 Aligned_cols=6 Identities=50% Similarity=0.634 Sum_probs=2.1
Q ss_pred HHHHHH
Q 007691 280 VNNLRD 285 (593)
Q Consensus 280 ~ekl~~ 285 (593)
+-+|.+
T Consensus 401 Vr~LA~ 406 (553)
T PRK15048 401 VRNLAS 406 (553)
T ss_pred HHHHHH
Confidence 333333
No 5
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=94.01 E-value=13 Score=41.95 Aligned_cols=13 Identities=0% Similarity=-0.255 Sum_probs=6.0
Q ss_pred hccccCccccccc
Q 007691 15 VLPGCQSWGWFSS 27 (593)
Q Consensus 15 ~~~~~~s~~WFsS 27 (593)
+.+..+.+|+|+-
T Consensus 21 ~~~~~g~~~~~~~ 33 (554)
T PRK15041 21 LQLTSGGLFFNAL 33 (554)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444555443
No 6
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=93.63 E-value=0.08 Score=54.49 Aligned_cols=76 Identities=24% Similarity=0.393 Sum_probs=60.3
Q ss_pred hhHHHHHHHHHHHHHHHHhcCccccccchhhHHHHHHHHHHHHHHHHhcccchh----hhhHHHHhHHHHHHHHHHHHHH
Q 007691 426 RMIKAFFIYSLSIFIIYMLTSTKQTYTVRPRLYIGLCLTFLIEVVTFRFTTYDI----EQQTWIVSCDRSLFVLLAAIQL 501 (593)
Q Consensus 426 ~~~ksf~fY~~~~~~iymlTStk~T~saR~~L~~lL~~~l~iEr~l~~~~~~~~----~~~~w~~~~~R~~f~~~~~v~l 501 (593)
.+|.+|+|-++.+++.|.||.| ..+|---.+||.++++-=.+|.+ .+|++ ..|+| +=++|+++|..+.
T Consensus 166 af~vAflFnwIGFlltycl~tT---~agRYGA~~GfGLsLikwilIv~-~sd~f~~y~n~q~w----Lwwi~~vlG~ll~ 237 (262)
T KOG4812|consen 166 AFIVAFLFNWIGFLLTYCLTTT---HAGRYGAISGFGLSLIKWILIVR-FSDDFESYFNGQYW----LWWIFLVLGLLLF 237 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh---HhhhhhhhhccchhhheeeEEee-cccccccccccchH----HHHHHHHHHHHHH
Confidence 4678999999999999999975 45788888999999887333333 44443 45777 6899999999999
Q ss_pred HHHHHhcc
Q 007691 502 LHSIFTYR 509 (593)
Q Consensus 502 l~~i~~yr 509 (593)
|+.++.|=
T Consensus 238 lr~~i~Yi 245 (262)
T KOG4812|consen 238 LRGFINYI 245 (262)
T ss_pred HHHHHhHH
Confidence 99999773
No 7
>PRK09793 methyl-accepting protein IV; Provisional
Probab=93.51 E-value=16 Score=41.09 Aligned_cols=85 Identities=12% Similarity=0.169 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhhhhhhhcchHHHHHHhhchhhHHHhhHHHHHHHHHHHHHhH
Q 007691 276 LGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQSTALESLQLLTKFQSEALAESR 355 (593)
Q Consensus 276 l~~~~ekl~~~t~~i~~ei~~~g~~l~~~m~~lq~~a~~I~~~~~~SLenQ~~LL~gQ~~a~~~L~~l~~~q~~aleesr 355 (593)
+++|+-+|.++|.+--++|...=+.+...++.-.. ....++.+++.-..-...-...+..+..-.+-|....++-.
T Consensus 395 VA~EVR~LAe~t~~a~~~I~~~i~~~~~~v~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~e~~~~~~~i~ 470 (533)
T PRK09793 395 VAGEVRNLASRSAQAAKEIKGLIEESVNRVQQGSK----LVNNAAATMTDIVSSVTRVNDIMGEIASASEEQRRGIEQVA 470 (533)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666665555555543333333322211 22223333443333333333444444444444555555555
Q ss_pred HHHHHHHHH
Q 007691 356 NTLQELAEY 364 (593)
Q Consensus 356 ~t~q~la~~ 364 (593)
..+..+.+.
T Consensus 471 ~~i~~i~~~ 479 (533)
T PRK09793 471 QAVSQMDQV 479 (533)
T ss_pred HHHHHHHHH
Confidence 555444433
No 8
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=91.59 E-value=14 Score=35.95 Aligned_cols=10 Identities=10% Similarity=0.149 Sum_probs=3.6
Q ss_pred HHHHHhHHHH
Q 007691 349 EALAESRNTL 358 (593)
Q Consensus 349 ~aleesr~t~ 358 (593)
.+.++....+
T Consensus 214 ~~~~~~~~~~ 223 (262)
T smart00283 214 AGSEEVNAAI 223 (262)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 9
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.30 E-value=4.4 Score=47.89 Aligned_cols=65 Identities=17% Similarity=0.272 Sum_probs=46.6
Q ss_pred HHHHhHHHHH---HHHHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHhhhhhhhcchhhhH
Q 007691 146 AFLLETNSIC---YQLQAHGFQYETERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSID 210 (593)
Q Consensus 146 eF~~ht~sIC---~~Lq~q~fq~~TE~tVnkL~~sS~~a~~~Le~l~e~qe~Ll~~~~~~~dsL~s~~ 210 (593)
+|+.++..++ |...++.-+.+.++=|+.|..-...+.+.|..+.+..+.|.+....+++-+..+.
T Consensus 539 ~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~ 606 (717)
T PF10168_consen 539 ELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAK 606 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777 4566777888888888889888888888888888877777665544444333333
No 10
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=90.92 E-value=1.5 Score=42.63 Aligned_cols=59 Identities=15% Similarity=0.277 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 007691 244 IAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSM 305 (593)
Q Consensus 244 Ia~sQ~eL~e~q~~m~~~l~~g~a~~~esy~~l~~~~ekl~~~t~~i~~ei~~~g~~l~~~m 305 (593)
|.....+|+...-++.+++.+=-+.|..+++.+.++++++.. +|.+++..+.+.|...|
T Consensus 72 l~et~~~L~k~~Pev~~qa~~l~e~lQ~~vq~l~~E~qk~~k---~v~~~~~~~~e~l~~~~ 130 (155)
T PF07464_consen 72 LEETAEKLRKANPEVEKQANELQEKLQSAVQSLVQESQKLAK---EVSENSEGANEKLQPAI 130 (155)
T ss_dssp HHHHHHGGGG-SHHHHHT-SSSHHHHHHHHHHHHHHHHHHHH---HHHS---SS-GGGHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhHHHHHHH
Confidence 444444554444445555555555566666666666666643 34444444444444333
No 11
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=88.84 E-value=18 Score=42.90 Aligned_cols=35 Identities=9% Similarity=0.328 Sum_probs=16.5
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 007691 155 CYQLQAHGFQYETERLVNELKKSADYTEHKLEIIE 189 (593)
Q Consensus 155 C~~Lq~q~fq~~TE~tVnkL~~sS~~a~~~Le~l~ 189 (593)
|+.+=.++.+...|+-|.++...-.+..+....+.
T Consensus 537 ~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk 571 (717)
T PF10168_consen 537 CLELLSQATKVLREEYIEKQDLAREEIQRRVKLLK 571 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555554444444444433333
No 12
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=88.42 E-value=24 Score=33.74 Aligned_cols=25 Identities=20% Similarity=0.415 Sum_probs=10.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhHHH
Q 007691 171 VNELKKSADYTEHKLEIIEEKSDTL 195 (593)
Q Consensus 171 VnkL~~sS~~a~~~Le~l~e~qe~L 195 (593)
++.+........+.++.+.+..++|
T Consensus 18 ~~~~~~~~~~~~~~~~~l~~~~~~i 42 (213)
T PF00015_consen 18 MEEIQESIEEIAESIEELSESSEDI 42 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 13
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=88.39 E-value=12 Score=40.99 Aligned_cols=19 Identities=26% Similarity=0.497 Sum_probs=13.7
Q ss_pred HHhhhhHHHHHHHHHHHHH
Q 007691 158 LQAHGFQYETERLVNELKK 176 (593)
Q Consensus 158 Lq~q~fq~~TE~tVnkL~~ 176 (593)
+....|+.+.||..-+|.-
T Consensus 191 vd~~eWklEvERV~PqLKv 209 (359)
T PF10498_consen 191 VDPAEWKLEVERVLPQLKV 209 (359)
T ss_pred CCHHHHHHHHHHHhhhhee
Confidence 3456788888888888854
No 14
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=88.06 E-value=8.5 Score=41.24 Aligned_cols=142 Identities=18% Similarity=0.268 Sum_probs=86.3
Q ss_pred HhhhhHHHHHHHHHHHHHhHHHHHH----HHHHHHHHhHHHHhhhhhhhcchhhhHHHH----HHHHHhhhhHHHHHHHh
Q 007691 159 QAHGFQYETERLVNELKKSADYTEH----KLEIIEEKSDTLLQSSNQIHDSLDSIDHRV----QNVAQTAKGVRDLMDIL 230 (593)
Q Consensus 159 q~q~fq~~TE~tVnkL~~sS~~a~~----~Le~l~e~qe~Ll~~~~~~~dsL~s~~~Q~----~~laet~k~v~~~i~~l 230 (593)
.+..|+.+.||..-+|.-+-..-.+ -++.+++....|.+-++.+.-.|..++.-. ++++.--|++-+++..+
T Consensus 199 Da~eW~lEvERVlPQLKVt~k~DakDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l 278 (384)
T KOG0972|consen 199 DAIEWKLEVERVLPQLKVTLKQDAKDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIASREKSLNNQLASL 278 (384)
T ss_pred hHHHHHHHHHHhhhhheehhccccHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567999999999888776543211 134444444455555555555555554332 56666667888888888
Q ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHhhHHHHHHHHHHHHHHHHHH
Q 007691 231 SRHSEVVYNQSKEIAASQTELQEGQVRIKEKLDEGMATLI----------------DAYSNLGKEVNNLRDEAIEIEKEI 294 (593)
Q Consensus 231 ~~~s~~i~Eq~~eIa~sQ~eL~e~q~~m~~~l~~g~a~~~----------------esy~~l~~~~ekl~~~t~~i~~ei 294 (593)
-+..+.+..+..+|...+.++++|-.+-++.+++-|.-+. .....+.+.+-||++++..+-.+|
T Consensus 279 ~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~~msDGaplvkIkqavsKLk~et~~mnv~i 358 (384)
T KOG0972|consen 279 MQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQGAKMSDGAPLVKIKQAVSKLKEETQTMNVQI 358 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHHhhhhhe
Confidence 8877777777777777777777666665555554443331 123345555556666666666665
Q ss_pred Hhhhhh
Q 007691 295 SKAGDA 300 (593)
Q Consensus 295 ~~~g~~ 300 (593)
..+-++
T Consensus 359 gv~ehs 364 (384)
T KOG0972|consen 359 GVFEHS 364 (384)
T ss_pred ehhhHH
Confidence 554443
No 15
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=87.96 E-value=51 Score=36.99 Aligned_cols=46 Identities=11% Similarity=0.203 Sum_probs=22.5
Q ss_pred hhcchHHHHHHhhchhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHH
Q 007691 319 AGDSLDKQQQLLHGQSTALESLQLLTKFQSEALAESRNTLQELAEY 364 (593)
Q Consensus 319 ~~~SLenQ~~LL~gQ~~a~~~L~~l~~~q~~aleesr~t~q~la~~ 364 (593)
++++++....-.......+..+..-.+-|+...++-...+..+++.
T Consensus 436 ~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~i~~~ 481 (553)
T PRK15048 436 AGETMNNIVNAVTRVTDIMGEIASASDEQSRGIDQVALAVSEMDRV 481 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444455544444555555555555544443
No 16
>PRK11637 AmiB activator; Provisional
Probab=87.43 E-value=50 Score=36.32 Aligned_cols=36 Identities=19% Similarity=0.213 Sum_probs=17.2
Q ss_pred HHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHh
Q 007691 351 LAESRNTLQELAEYGHKQQEELLKRQEQLQEVHDHL 386 (593)
Q Consensus 351 leesr~t~q~la~~~~~qqeell~~q~ql~~~h~~l 386 (593)
|++.++.++.+..--..++.+|.....+-+..++.|
T Consensus 189 le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L 224 (428)
T PRK11637 189 LEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGL 224 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444455555555555544444443
No 17
>PRK09793 methyl-accepting protein IV; Provisional
Probab=87.20 E-value=57 Score=36.72 Aligned_cols=11 Identities=18% Similarity=0.287 Sum_probs=5.8
Q ss_pred HHHhhhhhhhh
Q 007691 310 RKADNIGSMAG 320 (593)
Q Consensus 310 ~~a~~I~~~~~ 320 (593)
.++.+|.....
T Consensus 408 ~a~~~I~~~i~ 418 (533)
T PRK09793 408 QAAKEIKGLIE 418 (533)
T ss_pred HHHHHHHHHHH
Confidence 45555655543
No 18
>PRK11637 AmiB activator; Provisional
Probab=87.17 E-value=52 Score=36.22 Aligned_cols=17 Identities=6% Similarity=0.083 Sum_probs=8.7
Q ss_pred hhcCChHHHHHHHHHHH
Q 007691 133 LKKIDDEEHKIYLAFLL 149 (593)
Q Consensus 133 t~~Mdd~af~vY~eF~~ 149 (593)
|+...++-|.+--.+..
T Consensus 10 ~~~~~~~~~~~~~~~~~ 26 (428)
T PRK11637 10 TRAVKPRRFAIRPILYA 26 (428)
T ss_pred cccccchhhhhhhHHHH
Confidence 34445555655544444
No 19
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=85.91 E-value=1e+02 Score=38.46 Aligned_cols=239 Identities=20% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHhhhhhhhcchhhhHHHHHHHHHhhhhHHHHHHHhhhhhHHHHhhhHHHH
Q 007691 166 ETERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYNQSKEIA 245 (593)
Q Consensus 166 ~TE~tVnkL~~sS~~a~~~Le~l~e~qe~Ll~~~~~~~dsL~s~~~Q~~~laet~k~v~~~i~~l~~~s~~i~Eq~~eIa 245 (593)
..+..+..+........+.+..+...-..+......+...+.++..+.+.+......+...+..+...-..+-+...+..
T Consensus 776 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~ 855 (1163)
T COG1196 776 KLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELE 855 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhh---hhhHHHHHHHhhhhhhh
Q 007691 246 ASQTELQ---EGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMF---SSMEQLQRKADNIGSMA 319 (593)
Q Consensus 246 ~sQ~eL~---e~q~~m~~~l~~g~a~~~esy~~l~~~~ekl~~~t~~i~~ei~~~g~~l~---~~m~~lq~~a~~I~~~~ 319 (593)
..-.++. ++.......+.+.+.........+..+++++..+-.++..++...-..+. .++..+......+....
T Consensus 856 ~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 935 (1163)
T COG1196 856 KELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEEL 935 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q ss_pred hc--------chHHHHHHhhchhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhchH
Q 007691 320 GD--------SLDKQQQLLHGQSTALESLQLLTKFQSEALAESRNTLQELAEYGHKQQEELLKRQEQLQEVHDHLFKNSR 391 (593)
Q Consensus 320 ~~--------SLenQ~~LL~gQ~~a~~~L~~l~~~q~~aleesr~t~q~la~~~~~qqeell~~q~ql~~~h~~l~~~s~ 391 (593)
.. .+++....+.-+..+++..| ..|+++..+.-.++. +...+.++|-+.-+.|+.+++.+-+-.+
T Consensus 936 ~~~~~~~~~~~~~~~i~~le~~i~~lg~VN------~~Aiee~e~~~~r~~-~l~~~~~dl~~a~~~l~~~i~~~d~~~~ 1008 (1163)
T COG1196 936 EEEYEDTLETELEREIERLEEEIEALGPVN------LRAIEEYEEVEERYE-ELKSQREDLEEAKEKLLEVIEELDKEKR 1008 (1163)
T ss_pred ccccccchhHHHHHHHHHHHHHHHhccCCC------hhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH-HHHHHHHhHHHHHHHH
Q 007691 392 SILA-AQEAFESKQASMFIAL 411 (593)
Q Consensus 392 sil~-aqe~~~~~q~~vf~~L 411 (593)
+.+. +++.+.++=..||..|
T Consensus 1009 ~~f~~~f~~In~~F~~if~~L 1029 (1163)
T COG1196 1009 ERFKETFDKINENFSEIFKEL 1029 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
No 20
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=85.36 E-value=45 Score=33.81 Aligned_cols=111 Identities=19% Similarity=0.281 Sum_probs=69.1
Q ss_pred HHHhHHHHHHHHHHHHHHhHHHHhhhhhhhcchhhhHHHHHHHHHhhhhHHHHHHHhhhhhHHHHhhhHHHHHHHHHHHH
Q 007691 174 LKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYNQSKEIAASQTELQE 253 (593)
Q Consensus 174 L~~sS~~a~~~Le~l~e~qe~Ll~~~~~~~dsL~s~~~Q~~~laet~k~v~~~i~~l~~~s~~i~Eq~~eIa~sQ~eL~e 253 (593)
|.+-.......++.+.+....|...-.++...+.++ ++..+-.|.|..-+.|+...-..+-|+.+.+.+.-.++..
T Consensus 20 L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~----Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEk 95 (193)
T PF14662_consen 20 LADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSL----QQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEK 95 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555555555444444444333 3455566778888888888888888888888888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 007691 254 GQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEK 292 (593)
Q Consensus 254 ~q~~m~~~l~~g~a~~~esy~~l~~~~ekl~~~t~~i~~ 292 (593)
+|..+ .++|+.+.+.+..+--+.|.++..+.++..
T Consensus 96 E~q~L----~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~ 130 (193)
T PF14662_consen 96 EQQSL----VAEIETLQEENGKLLAERDGLKKRSKELAT 130 (193)
T ss_pred HHHHH----HHHHHHHHHHHhHHHHhhhhHHHHHHHHHH
Confidence 76643 456666666666666666666555554443
No 21
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=85.34 E-value=1.2e+02 Score=38.49 Aligned_cols=50 Identities=24% Similarity=0.240 Sum_probs=26.2
Q ss_pred HHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhH
Q 007691 352 AESRNTLQELAEYGHKQQEELLKRQEQLQEVHDHLFKNSRSILAAQEAFESKQ 404 (593)
Q Consensus 352 eesr~t~q~la~~~~~qqeell~~q~ql~~~h~~l~~~s~sil~aqe~~~~~q 404 (593)
++.++...+++.....+-++|-.+=++ .--.-+.||.+.-.|.++..+-+
T Consensus 1604 ~~~t~~aE~~~~~a~q~~~eL~~~~e~---lk~~~~qns~~A~~a~~~a~sa~ 1653 (1758)
T KOG0994|consen 1604 QEETAAAEKLATSATQQLGELETRMEE---LKHKAAQNSAEAKQAEKTAGSAK 1653 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhccHHHHHHHHHHHHHH
Confidence 344444444554444444454433333 33445677777777776665433
No 22
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=83.12 E-value=60 Score=33.43 Aligned_cols=104 Identities=13% Similarity=0.230 Sum_probs=69.1
Q ss_pred HHHHhhhhhhhcchhhhHHHHHHHHHhhhhHHHHHHHhhhhhHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007691 193 DTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYNQSKE-IAASQTELQEGQVRIKEKLDEGMATLID 271 (593)
Q Consensus 193 e~Ll~~~~~~~dsL~s~~~Q~~~laet~k~v~~~i~~l~~~s~~i~Eq~~e-Ia~sQ~eL~e~q~~m~~~l~~g~a~~~e 271 (593)
..|-+...++.+.|..+....-++--..|.++..++......+...++... +..+...|...=..=...+++-...+..
T Consensus 27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~ 106 (225)
T COG1842 27 KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEA 106 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555555555666666776666666666555554 5555566655555555667777778888
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHh
Q 007691 272 AYSNLGKEVNNLRDEAIEIEKEISK 296 (593)
Q Consensus 272 sy~~l~~~~ekl~~~t~~i~~ei~~ 296 (593)
+|..+...+++++-.-..++.+|..
T Consensus 107 ~~~~~~~~~~~l~~~~~~Le~Ki~e 131 (225)
T COG1842 107 ELQQAEEQVEKLKKQLAALEQKIAE 131 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999998888888888877
No 23
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=82.95 E-value=1.4e+02 Score=37.72 Aligned_cols=10 Identities=20% Similarity=0.448 Sum_probs=4.1
Q ss_pred HHHHHHHHhc
Q 007691 63 QLVEDAKRRL 72 (593)
Q Consensus 63 k~le~a~~kl 72 (593)
+++++++.++
T Consensus 1354 ~~L~el~~~l 1363 (1758)
T KOG0994|consen 1354 RLLVELRAEL 1363 (1758)
T ss_pred HHHHHHHHHh
Confidence 3444444433
No 24
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=82.23 E-value=96 Score=35.20 Aligned_cols=118 Identities=13% Similarity=0.164 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhhhhhhhcchHHHHHHhhchhhHHHhhHHHHHHHHHHHHHhH
Q 007691 276 LGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQSTALESLQLLTKFQSEALAESR 355 (593)
Q Consensus 276 l~~~~ekl~~~t~~i~~ei~~~g~~l~~~m~~lq~~a~~I~~~~~~SLenQ~~LL~gQ~~a~~~L~~l~~~q~~aleesr 355 (593)
+++|+-+|.++|.+--++|..+=+.+...++.- .++...++++++.-..-...-...++.+..-.+-|+.+.++-.
T Consensus 399 VA~EVR~LA~~s~~at~~I~~~i~~~~~~v~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~eq~~~~~~i~ 474 (554)
T PRK15041 399 VAGEVRNLAQRSAQAAREIKSLIEDSVGKVDVG----STLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVG 474 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777776666666665444333333332 2233445556666555566666666666666666777777777
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q 007691 356 NTLQELAEYGHKQQEELLKRQEQLQEVHDHLFKNSRSILAAQEAFE 401 (593)
Q Consensus 356 ~t~q~la~~~~~qqeell~~q~ql~~~h~~l~~~s~sil~aqe~~~ 401 (593)
..+..+....+.. ...-+++..+-+.|.+.+..+-+....|+
T Consensus 475 ~~i~~i~~~~~~~----~~~~~~~~~~~~~l~~~a~~L~~~v~~Fk 516 (554)
T PRK15041 475 LAVAEMDRVTQQN----AALVEESAAAAAALEEQASRLTEAVAVFR 516 (554)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7766666543332 23334455555555555555555555554
No 25
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=81.95 E-value=56 Score=33.62 Aligned_cols=54 Identities=15% Similarity=0.238 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhhhhhcchhhhHHHHHHHHHhhhhHHHHHHHhh
Q 007691 178 ADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILS 231 (593)
Q Consensus 178 S~~a~~~Le~l~e~qe~Ll~~~~~~~dsL~s~~~Q~~~laet~k~v~~~i~~l~ 231 (593)
.....+.+..+..-.+.+.....++...+.++..=...+++.++.+...++.+.
T Consensus 166 ~~~l~~~l~~l~~l~~~l~~~~~~i~~ll~~l~~l~~~l~~~~~~l~~~v~~l~ 219 (291)
T TIGR00996 166 GPQLRNLLDGLAQLTAALNARDGDIGALIDNLNRVLDVLADRSDQLDRLLDNLA 219 (291)
T ss_pred cHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 333444444444444444444444444444444334444444444444444333
No 26
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=81.76 E-value=58 Score=32.37 Aligned_cols=36 Identities=19% Similarity=0.360 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 007691 261 KLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISK 296 (593)
Q Consensus 261 ~l~~g~a~~~esy~~l~~~~ekl~~~t~~i~~ei~~ 296 (593)
.+.+-++.+...+..+...+++|++.-..++.+|..
T Consensus 95 ~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e 130 (221)
T PF04012_consen 95 DLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEE 130 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666655555555544
No 27
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=80.84 E-value=48 Score=30.81 Aligned_cols=9 Identities=22% Similarity=0.637 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 007691 261 KLDEGMATL 269 (593)
Q Consensus 261 ~l~~g~a~~ 269 (593)
.|.+.+..+
T Consensus 64 ~i~~~~~~~ 72 (202)
T PF01442_consen 64 RIEERIEEL 72 (202)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 28
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=80.12 E-value=1.8e+02 Score=36.86 Aligned_cols=171 Identities=12% Similarity=0.161 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHH---HHHHHHHhH------------------HHHh
Q 007691 139 EEHKIYLAFLLETNSICYQLQAHGFQYETERLVNELKKSADYTEHK---LEIIEEKSD------------------TLLQ 197 (593)
Q Consensus 139 ~af~vY~eF~~ht~sIC~~Lq~q~fq~~TE~tVnkL~~sS~~a~~~---Le~l~e~qe------------------~Ll~ 197 (593)
...+.=.+|. ..-+-|+++++..+|..-.++.++++.....-... |....+..+ +..+
T Consensus 302 ~~k~~al~fL-~kenel~~~~~~~~q~~~~~~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~ 380 (1293)
T KOG0996|consen 302 GPKNEALEFL-KKENELFRKKNKLCQYILYESRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAK 380 (1293)
T ss_pred hhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3444444544 44566899999999999999888887655442222 222222211 0000
Q ss_pred hhh----hhhcchhhhHHHHHHHHHhhhhHHHHHHHhhhhhHHHHhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007691 198 SSN----QIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYNQSKEIA---ASQTELQEGQVRIKEKLDEGMATLI 270 (593)
Q Consensus 198 ~~~----~~~dsL~s~~~Q~~~laet~k~v~~~i~~l~~~s~~i~Eq~~eIa---~sQ~eL~e~q~~m~~~l~~g~a~~~ 270 (593)
..+ .....+..++.+.-+..+..|++...+..+.+ .+-+-.+++. ..-...+....++...|++=-....
T Consensus 381 ~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKlek---e~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~ 457 (1293)
T KOG0996|consen 381 ELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEK---EIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLE 457 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHH
Confidence 000 11112223333333444444444444432222 2222222211 1111223333344444444444445
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHh
Q 007691 271 DAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKAD 313 (593)
Q Consensus 271 esy~~l~~~~ekl~~~t~~i~~ei~~~g~~l~~~m~~lq~~a~ 313 (593)
.....+-+..++++++|..|.+|+......|.-....+.....
T Consensus 458 ~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~ 500 (1293)
T KOG0996|consen 458 KEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARS 500 (1293)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666667777777777778887777777654444443333
No 29
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=78.81 E-value=1.6e+02 Score=35.53 Aligned_cols=57 Identities=16% Similarity=0.194 Sum_probs=44.4
Q ss_pred HHHHHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHh
Q 007691 141 HKIYLAFLLETNSICYQLQAHGFQYETERLVNELKKSADYTEHKLEIIEEKSDTLLQ 197 (593)
Q Consensus 141 f~vY~eF~~ht~sIC~~Lq~q~fq~~TE~tVnkL~~sS~~a~~~Le~l~e~qe~Ll~ 197 (593)
+-.-+..+.-+-.+|.|+-++......+.+.+.+..+......-+......-+.|..
T Consensus 145 ~L~~~~~~il~g~i~aF~~n~~l~~~v~~~~~~~~~~~~Dl~~~l~~~~~qi~~l~~ 201 (806)
T PF05478_consen 145 LLLLLTLIILFGVICAFVANQQLSTGVDDTPNTVNSTLDDLRTFLNDTPQQIDHLLV 201 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 445555667788899999999999999998888888888877777777666666544
No 30
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=77.85 E-value=1.9e+02 Score=35.86 Aligned_cols=51 Identities=10% Similarity=0.159 Sum_probs=37.1
Q ss_pred HHHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHhhhhhhhcchh
Q 007691 157 QLQAHGFQYETERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLD 207 (593)
Q Consensus 157 ~Lq~q~fq~~TE~tVnkL~~sS~~a~~~Le~l~e~qe~Ll~~~~~~~dsL~ 207 (593)
+-|.+.|+-+.-.-.-.|-.--.++....+.+.+-+++.-+.+.+++|++.
T Consensus 264 leqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iE 314 (1243)
T KOG0971|consen 264 LEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIE 314 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677887777777777777777777777777777787787877777553
No 31
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=76.98 E-value=62 Score=35.51 Aligned_cols=37 Identities=19% Similarity=0.291 Sum_probs=23.7
Q ss_pred cCChHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHH
Q 007691 135 KIDDEEHKIYLAFLLETNSICYQLQAHGFQYETERLV 171 (593)
Q Consensus 135 ~Mdd~af~vY~eF~~ht~sIC~~Lq~q~fq~~TE~tV 171 (593)
..|..+|+.=++=-..-=-|+.=..+..|+.+-|++-
T Consensus 190 ~vd~~eWklEvERV~PqLKv~~~~d~kDWR~hleqm~ 226 (359)
T PF10498_consen 190 KVDPAEWKLEVERVLPQLKVTIRADAKDWRSHLEQMK 226 (359)
T ss_pred cCCHHHHHHHHHHHhhhheeeccCCcchHHHHHHHHH
Confidence 4677888866654443334444455789998887764
No 32
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=76.61 E-value=96 Score=31.91 Aligned_cols=96 Identities=17% Similarity=0.268 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHhhhhhhhcchhhhHHHHHHHHHhhhhHHHHHHHhhhhhHHHHh----
Q 007691 164 QYETERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYN---- 239 (593)
Q Consensus 164 q~~TE~tVnkL~~sS~~a~~~Le~l~e~qe~Ll~~~~~~~dsL~s~~~Q~~~laet~k~v~~~i~~l~~~s~~i~E---- 239 (593)
...+...++.+-.-.......++.+.++.........++......+..+++.|..-.+++...|.++...-..+-+
T Consensus 40 ~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~ 119 (264)
T PF06008_consen 40 LNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQ 119 (264)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCC
Confidence 3445555666655555555566666666666555555555555556666666666666666665554443332222
Q ss_pred -hhHHHHHHHHHHHHHHHHHH
Q 007691 240 -QSKEIAASQTELQEGQVRIK 259 (593)
Q Consensus 240 -q~~eIa~sQ~eL~e~q~~m~ 259 (593)
....+...+.+...+...|+
T Consensus 120 ~~~~~l~~~l~ea~~mL~emr 140 (264)
T PF06008_consen 120 LPSEDLQRALAEAQRMLEEMR 140 (264)
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 22235555555555555553
No 33
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=75.72 E-value=94 Score=31.37 Aligned_cols=80 Identities=10% Similarity=0.119 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHhHHHHhhhhhhhcchh-hhHHHHHHHHHhhhhHHHHHHHhhhhh
Q 007691 163 FQYETERLVNELKKSADYT-------EHKLEIIEEKSDTLLQSSNQIHDSLD-SIDHRVQNVAQTAKGVRDLMDILSRHS 234 (593)
Q Consensus 163 fq~~TE~tVnkL~~sS~~a-------~~~Le~l~e~qe~Ll~~~~~~~dsL~-s~~~Q~~~laet~k~v~~~i~~l~~~s 234 (593)
|...||..+.+.+..+... ...++.-...|..+.+.|+..-..|. .-..+...||+-.-+++.-||+|--..
T Consensus 16 my~aTE~~wak~~~q~m~TEEFSa~IG~vLd~yL~yQKafnE~MekYLe~lNlPSr~DiarvA~lvinlE~kvD~lee~f 95 (189)
T TIGR02132 16 AYDKTESFWGKAIGDNIKREEFSALMGNVLDLNLFYQKALNDTTGNYLEQVNVPTKEDIANVASLVINLEEKVDLIEEFF 95 (189)
T ss_pred HHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666655544433 33444445555666666665333332 334677888998899999999876555
Q ss_pred HHHHhhhH
Q 007691 235 EVVYNQSK 242 (593)
Q Consensus 235 ~~i~Eq~~ 242 (593)
.++|+...
T Consensus 96 dd~~d~l~ 103 (189)
T TIGR02132 96 DDKFDELE 103 (189)
T ss_pred HHHHHHHH
Confidence 55555554
No 34
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=73.96 E-value=1.1e+02 Score=34.71 Aligned_cols=100 Identities=21% Similarity=0.255 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhhhhhhhcchHHHHHHhhchhhHHHhhHHHH
Q 007691 265 GMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQSTALESLQLLT 344 (593)
Q Consensus 265 g~a~~~esy~~l~~~~ekl~~~t~~i~~ei~~~g~~l~~~m~~lq~~a~~I~~~~~~SLenQ~~LL~gQ~~a~~~L~~l~ 344 (593)
.+....+.|+.+-++++.++++..+++.+-+. +..+|..||.+-++..+....--|-=+.|.++|..-.+-|.-+.
T Consensus 348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~----~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~ 423 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQESSDLEAEKKI----VERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELE 423 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34445667788888888888888877776554 55677788877666655444433444555666555544444444
Q ss_pred HHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Q 007691 345 KFQSEALAESRNTLQELAEYGHKQQEELLKRQEQLQEV 382 (593)
Q Consensus 345 ~~q~~aleesr~t~q~la~~~~~qqeell~~q~ql~~~ 382 (593)
+-+ .++-..+++++-..||||+..
T Consensus 424 e~~--------------~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 424 ERE--------------KEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHH--------------HHHHHHHHHHHHHHHHHHHhH
Confidence 322 222334444455556666543
No 35
>PRK10698 phage shock protein PspA; Provisional
Probab=73.86 E-value=1.1e+02 Score=31.23 Aligned_cols=35 Identities=23% Similarity=0.345 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 007691 262 LDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISK 296 (593)
Q Consensus 262 l~~g~a~~~esy~~l~~~~ekl~~~t~~i~~ei~~ 296 (593)
..+.++.+...+......+++|++....|+.+|..
T Consensus 97 ~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~e 131 (222)
T PRK10698 97 LTDLIATLEHEVTLVDETLARMKKEIGELENKLSE 131 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888888888888888888877777776665
No 36
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=71.17 E-value=2.7e+02 Score=34.70 Aligned_cols=79 Identities=15% Similarity=0.233 Sum_probs=46.4
Q ss_pred HHHhHHHHHHHHHhhhhHHHHH-----HHHHHHHHh----HHHHHHHHHHHHHHhHHHHhhhhhhhcchhhhHHHHHHHH
Q 007691 147 FLLETNSICYQLQAHGFQYETE-----RLVNELKKS----ADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVA 217 (593)
Q Consensus 147 F~~ht~sIC~~Lq~q~fq~~TE-----~tVnkL~~s----S~~a~~~Le~l~e~qe~Ll~~~~~~~dsL~s~~~Q~~~la 217 (593)
|-...++.|.||-++-=.+-++ .+++....- -..+...|..+.+....|.+..+.-..+|..++...+++.
T Consensus 136 fNIQi~NLCqFLpQDkV~EFa~L~pi~LL~eTekAig~~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~ 215 (1072)
T KOG0979|consen 136 FNIQIDNLCQFLPQDKVKEFARLSPIELLVETEKAIGAEELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLE 215 (1072)
T ss_pred HhcccCchhhhccHHHHHHHHcCChHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3456899999999876554443 223222221 2234455666666667777766666666766666665555
Q ss_pred HhhhhHHH
Q 007691 218 QTAKGVRD 225 (593)
Q Consensus 218 et~k~v~~ 225 (593)
.-..++..
T Consensus 216 kdVE~~re 223 (1072)
T KOG0979|consen 216 KDVERVRE 223 (1072)
T ss_pred HHHHHHHH
Confidence 55444443
No 37
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=71.04 E-value=1.6e+02 Score=31.93 Aligned_cols=85 Identities=19% Similarity=0.276 Sum_probs=55.3
Q ss_pred HHHHHhhhhHHHHHHHhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 007691 214 QNVAQTAKGVRDLMDILSRHSEVVYNQSKEIAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKE 293 (593)
Q Consensus 214 ~~laet~k~v~~~i~~l~~~s~~i~Eq~~eIa~sQ~eL~e~q~~m~~~l~~g~a~~~esy~~l~~~~ekl~~~t~~i~~e 293 (593)
.+|.++...+...=+.|.+..++...|..+|+.-+.++-+.|.+.+ .++.+.|+|.+.- ..
T Consensus 206 ~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k---------------~~~~EnEeL~q~L----~~ 266 (306)
T PF04849_consen 206 KQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCK---------------QLAAENEELQQHL----QA 266 (306)
T ss_pred HHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHhhhHHHHHHHH----HH
Confidence 5567777777777788888888888888888888888877777653 4455556555521 12
Q ss_pred HHhhhhhhhhhhHHHHHHHhhhhh
Q 007691 294 ISKAGDAMFSSMEQLQRKADNIGS 317 (593)
Q Consensus 294 i~~~g~~l~~~m~~lq~~a~~I~~ 317 (593)
.+..+..|...+.+||.+-.+...
T Consensus 267 ske~Q~~L~aEL~elqdkY~E~~~ 290 (306)
T PF04849_consen 267 SKESQRQLQAELQELQDKYAECMA 290 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233334455566666665555443
No 38
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=70.91 E-value=1.8e+02 Score=32.52 Aligned_cols=26 Identities=12% Similarity=0.215 Sum_probs=14.8
Q ss_pred HHHHHHHHhhh---hHHHHHHHHHHHHHH
Q 007691 416 ALHNAMLLESR---MIKAFFIYSLSIFII 441 (593)
Q Consensus 416 ~lhn~iL~E~~---~~ksf~fY~~~~~~i 441 (593)
.++.++-.|.. +.+.++++++.+++.
T Consensus 321 ~~Qq~~q~e~~~n~~~r~~l~k~inllL~ 349 (395)
T PF10267_consen 321 QQQQVVQLEGTENSRARALLGKLINLLLT 349 (395)
T ss_pred HhhhhhhhcccccccHHHHHHHHHHHHHH
Confidence 34445544443 367777777766553
No 39
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=70.23 E-value=82 Score=30.80 Aligned_cols=35 Identities=23% Similarity=0.376 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH
Q 007691 275 NLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQ 309 (593)
Q Consensus 275 ~l~~~~ekl~~~t~~i~~ei~~~g~~l~~~m~~lq 309 (593)
.|.+..++|+...-+++.++..+++.|=+.++.|-
T Consensus 71 kl~et~~~L~k~~Pev~~qa~~l~e~lQ~~vq~l~ 105 (155)
T PF07464_consen 71 KLEETAEKLRKANPEVEKQANELQEKLQSAVQSLV 105 (155)
T ss_dssp HHHHHHHGGGG-SHHHHHT-SSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555666666665555554444443
No 40
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=69.66 E-value=2.2e+02 Score=32.91 Aligned_cols=148 Identities=15% Similarity=0.215 Sum_probs=84.6
Q ss_pred hhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHhhhhhhhcchhhhHHHH-------HHHHHhhhhHHHHHHHhhh
Q 007691 160 AHGFQYETERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRV-------QNVAQTAKGVRDLMDILSR 232 (593)
Q Consensus 160 ~q~fq~~TE~tVnkL~~sS~~a~~~Le~l~e~qe~Ll~~~~~~~dsL~s~~~Q~-------~~laet~k~v~~~i~~l~~ 232 (593)
-.+-+..-++++++. ..+.......+.+.++-..|-...++...+.+.+++-- ++|..--.-++.+|..|..
T Consensus 273 i~~lk~~n~~l~e~i-~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~ 351 (622)
T COG5185 273 IANLKTQNDNLYEKI-QEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQS 351 (622)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 334455555666554 45666777777777777777666666555554444222 2333333333344443333
Q ss_pred hhHHHHhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Q 007691 233 HSEVVYNQSKE--IAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQR 310 (593)
Q Consensus 233 ~s~~i~Eq~~e--Ia~sQ~eL~e~q~~m~~~l~~g~a~~~esy~~l~~~~ekl~~~t~~i~~ei~~~g~~l~~~m~~lq~ 310 (593)
.-..+.-|.++ |+..|.++ +..=++++.. ...-++-+.++|+.+-.+-..++....+++--.+.++-+
T Consensus 352 ~~d~L~~q~~kq~Is~e~fe~---mn~Ere~L~r-------eL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~s 421 (622)
T COG5185 352 NIDELHKQLRKQGISTEQFEL---MNQEREKLTR-------ELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDS 421 (622)
T ss_pred hHHHHHHHHHhcCCCHHHHHH---HHHHHHHHHH-------HHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445554 66666666 2222344443 344445667777777777777777777777777788877
Q ss_pred HHhhhhhh
Q 007691 311 KADNIGSM 318 (593)
Q Consensus 311 ~a~~I~~~ 318 (593)
.+..|+-.
T Consensus 422 l~~~i~~~ 429 (622)
T COG5185 422 LIQNITRS 429 (622)
T ss_pred HHHHhccc
Confidence 77776644
No 41
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=69.37 E-value=1.6e+02 Score=31.40 Aligned_cols=54 Identities=7% Similarity=0.009 Sum_probs=24.8
Q ss_pred HHHHHHHhHHHHHHHHHhhhhHHH----HHHHHHHHHHhHHHHHHHHHHHHHHhHHHH
Q 007691 143 IYLAFLLETNSICYQLQAHGFQYE----TERLVNELKKSADYTEHKLEIIEEKSDTLL 196 (593)
Q Consensus 143 vY~eF~~ht~sIC~~Lq~q~fq~~----TE~tVnkL~~sS~~a~~~Le~l~e~qe~Ll 196 (593)
.--.-|.-....|-..--..|.+- .+.+.+.|.........-.+.+....+.|.
T Consensus 119 ~m~~q~~~vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~ 176 (325)
T PF08317_consen 119 LMDNQFQLVKTYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLD 176 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555555555543 344444444444444444444444444433
No 42
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=68.63 E-value=1.4e+02 Score=30.18 Aligned_cols=38 Identities=13% Similarity=0.293 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Q 007691 260 EKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKA 297 (593)
Q Consensus 260 ~~l~~g~a~~~esy~~l~~~~ekl~~~t~~i~~ei~~~ 297 (593)
....+.++.+...|..+...+++|+..-.+++.+|..+
T Consensus 95 ~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~ 132 (219)
T TIGR02977 95 QKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEA 132 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33467777788888888888888888777777777663
No 43
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=68.58 E-value=1.1 Score=37.15 Aligned_cols=39 Identities=23% Similarity=0.445 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHhhhhhhh
Q 007691 494 VLLAAIQLLHSIFTYRDYEILNYQMLQTVLEKINGMERDK 533 (593)
Q Consensus 494 ~~~~~v~ll~~i~~yrDye~lN~qlL~~l~~k~~~~~~~~ 533 (593)
+++.++.++...+.|.+|..++.+ +..++.++..+++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~e-i~~l~~~i~~l~~e~ 40 (80)
T PF04977_consen 2 LLFLVIFLVFGISGYSRYYQLNQE-IAELQKEIEELKKEN 40 (80)
T ss_pred eeehhhHHHHhcchHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 344555566666777777766655 778888888887665
No 44
>PF10176 DUF2370: Protein of unknown function (DUF2370); InterPro: IPR019325 Proteins in this family are conserved from fungi to humans. They include the human NEDD4 family-interacting proteins and the yeast BSD2 metal homeostatis proteins.
Probab=67.47 E-value=12 Score=38.82 Aligned_cols=76 Identities=20% Similarity=0.274 Sum_probs=57.2
Q ss_pred hhHHHHHHHHHHHHHHHHhcCccccccchhhHHHHHHHHHHHHHHHHhccc-----------------c----h------
Q 007691 426 RMIKAFFIYSLSIFIIYMLTSTKQTYTVRPRLYIGLCLTFLIEVVTFRFTT-----------------Y----D------ 478 (593)
Q Consensus 426 ~~~ksf~fY~~~~~~iymlTStk~T~saR~~L~~lL~~~l~iEr~l~~~~~-----------------~----~------ 478 (593)
.++-+|+|=++.+++.|+|++|.. +|-=-.+||.++++-=-++.+... | |
T Consensus 93 n~~vs~~Fq~iGFllty~l~tthA---ar~Gs~aGlGltli~~~~~~~~~~~~~~~~~~~~~~~~~~~dPn~~d~~~~~~ 169 (233)
T PF10176_consen 93 NFLVSFSFQWIGFLLTYCLHTTHA---ARYGSRAGLGLTLIKYGLIMRPSTVTSKGGKDDPPGRIEPPDPNSYDFDPSSV 169 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchH---hhccchhhchHHHHhhhheEeeccCCCCCCCCCCcCccCCCCCccccCCcccc
Confidence 356899999999999999998764 677788899999876555555421 0 0
Q ss_pred --------------------hhhhHHHHhHHHHHHHHHHHHHHHHHHHhc
Q 007691 479 --------------------IEQQTWIVSCDRSLFVLLAAIQLLHSIFTY 508 (593)
Q Consensus 479 --------------------~~~~~w~~~~~R~~f~~~~~v~ll~~i~~y 508 (593)
...+- |+=++++++|.++++.+|+.|
T Consensus 170 ~~~~~~d~~~s~~~~~~~~~~~~~~----wla~~Lm~~G~fI~irsi~dY 215 (233)
T PF10176_consen 170 NAGGTVDGFTSSLSHGTDEASQSNP----WLAYILMAFGWFIFIRSIIDY 215 (233)
T ss_pred cCCCCCCCCccCcCCcccccccCCc----HHHHHHHHHHHHHHHHHHHHH
Confidence 11222 478899999999999999977
No 45
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=65.48 E-value=1.6e+02 Score=31.02 Aligned_cols=87 Identities=14% Similarity=0.226 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhHHHHhhhhhhhcchhhhHHHHHHHHHhhhhHHHHHHHhhhhhHHHHhhhHHHHHHHHHHH-HHHHHHHH
Q 007691 182 EHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYNQSKEIAASQTELQ-EGQVRIKE 260 (593)
Q Consensus 182 ~~~Le~l~e~qe~Ll~~~~~~~dsL~s~~~Q~~~laet~k~v~~~i~~l~~~s~~i~Eq~~eIa~sQ~eL~-e~q~~m~~ 260 (593)
.+++-.+...-.++..+++.++..|..|..||+.|..-...++..+.....| +.++..+.. +.--+|.+
T Consensus 112 gekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k~~~~~g~----------~~~~~~D~eR~qty~~a~ 181 (254)
T KOG2196|consen 112 GEKISGLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPLETKLELQSGH----------TYLSRADVEREQTYKMAE 181 (254)
T ss_pred cHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc----------hhhhhhhHHHHHHHHHHH
Confidence 3344444444445555555666666677777666655555555544332111 112222222 22345666
Q ss_pred HHHHHHHHHHHHHHhhHH
Q 007691 261 KLDEGMATLIDAYSNLGK 278 (593)
Q Consensus 261 ~l~~g~a~~~esy~~l~~ 278 (593)
.||..+.++.+-...+-+
T Consensus 182 nidsqLk~l~~dL~~ii~ 199 (254)
T KOG2196|consen 182 NIDSQLKRLSEDLKQIIK 199 (254)
T ss_pred HHHHHHHHHHhhHHHHHH
Confidence 777666666544443333
No 46
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=65.22 E-value=3.6e+02 Score=33.87 Aligned_cols=35 Identities=26% Similarity=0.270 Sum_probs=18.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007691 235 EVVYNQSKEIAASQTELQEGQVRIKEKLDEGMATL 269 (593)
Q Consensus 235 ~~i~Eq~~eIa~sQ~eL~e~q~~m~~~l~~g~a~~ 269 (593)
+++-...++|.+.-.++.+++..+.++|++..+.+
T Consensus 312 ~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~ 346 (1074)
T KOG0250|consen 312 EEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDL 346 (1074)
T ss_pred HHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 33333445555666666666666666655544443
No 47
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=64.20 E-value=1.4e+02 Score=28.57 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=15.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHh
Q 007691 271 DAYSNLGKEVNNLRDEAIEIEKEISK 296 (593)
Q Consensus 271 esy~~l~~~~ekl~~~t~~i~~ei~~ 296 (593)
+.|.-+++++.+|...+.+.-.+|..
T Consensus 75 ~gF~vvA~eir~LA~~t~~~~~~I~~ 100 (213)
T PF00015_consen 75 RGFAVVADEIRKLAEQTSESAKEISE 100 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 34555666666666666655555555
No 48
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=62.41 E-value=3.6e+02 Score=32.80 Aligned_cols=30 Identities=7% Similarity=0.160 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhHHH
Q 007691 166 ETERLVNELKKSADYTEHKLEIIEEKSDTL 195 (593)
Q Consensus 166 ~TE~tVnkL~~sS~~a~~~Le~l~e~qe~L 195 (593)
.|...+.++...-....+.++.+..+-+.+
T Consensus 174 ~~~~~l~~~~~~l~el~~~~~~L~~q~~~l 203 (1164)
T TIGR02169 174 KALEELEEVEENIERLDLIIDEKRQQLERL 203 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444455544444433
No 49
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=62.03 E-value=4.1e+02 Score=33.39 Aligned_cols=154 Identities=15% Similarity=0.222 Sum_probs=68.2
Q ss_pred HHHHhhhhhhhcchhhhHHHHHHHHHhhhhHHHHHHHhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007691 193 DTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYNQSKEIAASQTELQEGQVRIKEKLDEGMATLIDA 272 (593)
Q Consensus 193 e~Ll~~~~~~~dsL~s~~~Q~~~laet~k~v~~~i~~l~~~s~~i~Eq~~eIa~sQ~eL~e~q~~m~~~l~~g~a~~~es 272 (593)
+.|.-...++.+.+++.++|-.++..+.+.+...++.+.-....+.. +...+|.++.+.-.+|+ -+...
T Consensus 818 e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~---~~~~~~~el~~~k~k~~--------~~dt~ 886 (1174)
T KOG0933|consen 818 ERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEK---DVKKAQAELKDQKAKQR--------DIDTE 886 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh---HHHHHHHHHHHHHHHHH--------hhhHH
Confidence 34444444555556666666666666656666655554443322222 12223333333322221 12222
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhhhhhhhcchHHHHHHhhchhhHHHhhHHHHHHHHHHHH
Q 007691 273 YSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQSTALESLQLLTKFQSEALA 352 (593)
Q Consensus 273 y~~l~~~~ekl~~~t~~i~~ei~~~g~~l~~~m~~lq~~a~~I~~~~~~SLenQ~~LL~gQ~~a~~~L~~l~~~q~~ale 352 (593)
..++.+..++...+..+++-+++..-+ .+..+++.+.+....+ +.|.+=..-|.++.....--++.+-|-+.-.-
T Consensus 887 i~~~~~~~e~~~~e~~~~~l~~kkle~----e~~~~~~e~~~~~k~v-~~l~~k~~wi~~ek~~fgk~gt~yDf~~~~p~ 961 (1174)
T KOG0933|consen 887 ISGLLTSQEKCLSEKSDGELERKKLEH----EVTKLESEKANARKEV-EKLLKKHEWIGDEKRLFGKKGTDYDFESYDPH 961 (1174)
T ss_pred HhhhhhHHHHHHHHhhcccchHHHHHh----HHHHhhhhHHHHHHHH-HHHHHhccchhHHHHhhcCCCCccccccCCHh
Confidence 333344455555544444444444222 2233333333322222 34444445555555555445555555555455
Q ss_pred HhHHHHHHHH
Q 007691 353 ESRNTLQELA 362 (593)
Q Consensus 353 esr~t~q~la 362 (593)
+.|+.+..|.
T Consensus 962 ~are~l~~Lq 971 (1174)
T KOG0933|consen 962 EAREELKKLQ 971 (1174)
T ss_pred HHHHHHHHhh
Confidence 5566554443
No 50
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=61.58 E-value=3.3e+02 Score=32.08 Aligned_cols=72 Identities=15% Similarity=0.228 Sum_probs=42.5
Q ss_pred HHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHh--hhchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 007691 350 ALAESRNTLQELAEYGHKQQEELLKRQEQLQEVHDHL--FKNSRSILAAQEAFESKQASMFIALDKLFALHNAM 421 (593)
Q Consensus 350 aleesr~t~q~la~~~~~qqeell~~q~ql~~~h~~l--~~~s~sil~aqe~~~~~q~~vf~~Ld~l~~lhn~i 421 (593)
.+++.|..++.+.+-.+.+.+..-+...++...-+.. ..=.+-|++--..++.....|.-+|.-...||.-|
T Consensus 448 ~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkei 521 (594)
T PF05667_consen 448 EIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEI 521 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777777777777666665544443333333222211 00012566655555666667888999998888775
No 51
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=61.10 E-value=2.8e+02 Score=31.20 Aligned_cols=49 Identities=20% Similarity=0.318 Sum_probs=25.7
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 007691 236 VVYNQSKEIAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIE 291 (593)
Q Consensus 236 ~i~Eq~~eIa~sQ~eL~e~q~~m~~~l~~g~a~~~esy~~l~~~~ekl~~~t~~i~ 291 (593)
.|+|..+||...|..|.+--..++ ..+...|..+.+.+++=+=....+|
T Consensus 264 aileeL~eIk~~q~~Leesye~Lk-------e~~krdy~fi~etLQEERyR~erLE 312 (455)
T KOG3850|consen 264 AILEELREIKETQALLEESYERLK-------EQIKRDYKFIAETLQEERYRYERLE 312 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777766666544443333 3344556555555554443333333
No 52
>PF03882 KicB: KicB killing factor; InterPro: IPR005582 This family contains MukF, which are proteins involved in chromosome condensation, segregation and cell cycle progression. MukE (IPR007385 from INTERPRO) along with MukF interact with MukB (IPR007406 from INTERPRO) in vivo forming a complex, which is required for chromosome condensation and segregation in Escherichia coli []. The Muk complex appears to be similar to the SMC-ScpA-ScpB complex in other prokaryotes where MukB is the homologue of SMC []. ScpA (IPR003768 from INTERPRO) and ScpB (IPR005234 from INTERPRO) have little sequence similarity to MukE or MukF, though they are predicted to be structurally similar, being predominantly alpha-helical with coiled coil regions. ; GO: 0005509 calcium ion binding, 0006260 DNA replication, 0007059 chromosome segregation, 0005737 cytoplasm; PDB: 1T98_B 3RPU_X 3EUH_B 3EUK_J 3EUJ_B.
Probab=60.31 E-value=3e+02 Score=31.18 Aligned_cols=75 Identities=23% Similarity=0.271 Sum_probs=33.6
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHH---------HHh-hhhhhhcchhhhHHHHHHHHHhhh
Q 007691 152 NSICYQLQAHGFQYETERLVNELKKSADYTEHKLEIIEEKSDT---------LLQ-SSNQIHDSLDSIDHRVQNVAQTAK 221 (593)
Q Consensus 152 ~sIC~~Lq~q~fq~~TE~tVnkL~~sS~~a~~~Le~l~e~qe~---------Ll~-~~~~~~dsL~s~~~Q~~~laet~k 221 (593)
.-+=||+++..|-.. ++-=.|.--+.+..+..+..++..++ -++ ++. |-+++|+..|.-+-+.+.
T Consensus 109 gI~dyyirqrefs~l--rLS~qls~va~El~~aa~aa~e~~~e~~W~~~V~a~LkySVa---eifd~Idl~QR~MDeqQ~ 183 (440)
T PF03882_consen 109 GISDYYIRQREFSTL--RLSIQLSIVAQELQRAADAAEEGGDESHWRRNVFAPLKYSVA---EIFDSIDLNQRAMDEQQQ 183 (440)
T ss_dssp HHHHHHHS-----HH--HHHHHHHHHHHHHHHHHHHHHT--SHHHHHHHTHHHHHHTHH---HHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHhcCChHHHHHhhhhcccccHH---HHHhhhhHHHHHHHHHHH
Confidence 345688888888655 33334444444444444444433211 122 333 344456665555555556
Q ss_pred hHHHHHHHhh
Q 007691 222 GVRDLMDILS 231 (593)
Q Consensus 222 ~v~~~i~~l~ 231 (593)
.|++.|..++
T Consensus 184 ~vk~eIA~LL 193 (440)
T PF03882_consen 184 SVKEEIAALL 193 (440)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666665443
No 53
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=59.61 E-value=3.2e+02 Score=31.38 Aligned_cols=17 Identities=12% Similarity=0.274 Sum_probs=7.4
Q ss_pred hhhhhhHHHHHHHhhhh
Q 007691 300 AMFSSMEQLQRKADNIG 316 (593)
Q Consensus 300 ~l~~~m~~lq~~a~~I~ 316 (593)
+|...+..|+.....|.
T Consensus 169 ~L~~qi~~L~~~n~~i~ 185 (475)
T PRK10361 169 TLAHEIRNLQQLNAQMA 185 (475)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444433343
No 54
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=59.09 E-value=1.9e+02 Score=29.71 Aligned_cols=49 Identities=12% Similarity=0.251 Sum_probs=20.8
Q ss_pred HHHHHHHHhhhhHHHHHHHhhhhhHHHHhhhHHHHHHHHHHHHHHHHHH
Q 007691 211 HRVQNVAQTAKGVRDLMDILSRHSEVVYNQSKEIAASQTELQEGQVRIK 259 (593)
Q Consensus 211 ~Q~~~laet~k~v~~~i~~l~~~s~~i~Eq~~eIa~sQ~eL~e~q~~m~ 259 (593)
.+...+.+..+++...++.+...+..+.+...++...-..+.+.+..+.
T Consensus 185 ~~~~~i~~ll~~l~~l~~~l~~~~~~l~~~v~~l~~~~~~l~~~~~~l~ 233 (291)
T TIGR00996 185 ARDGDIGALIDNLNRVLDVLADRSDQLDRLLDNLATLTAQLADRDDALD 233 (291)
T ss_pred hcchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhChHHHH
Confidence 3334444444444444444444444444444443333333333333333
No 55
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=58.08 E-value=77 Score=28.82 Aligned_cols=11 Identities=36% Similarity=0.543 Sum_probs=7.0
Q ss_pred HHHHHHHHHHH
Q 007691 409 IALDKLFALHN 419 (593)
Q Consensus 409 ~~Ld~l~~lhn 419 (593)
.++|.|..||+
T Consensus 100 ~V~d~L~~~~~ 110 (110)
T PF10828_consen 100 AVIDSLRRLHK 110 (110)
T ss_pred HHHHHHHHhhC
Confidence 56666666664
No 56
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=57.79 E-value=1.3e+02 Score=26.28 Aligned_cols=11 Identities=9% Similarity=0.522 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 007691 433 IYSLSIFIIYM 443 (593)
Q Consensus 433 fY~~~~~~iym 443 (593)
|+|+.+.++|+
T Consensus 77 ~~~f~~~v~yI 87 (92)
T PF03908_consen 77 FLFFLLVVLYI 87 (92)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 57
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=57.70 E-value=1.7e+02 Score=30.32 Aligned_cols=28 Identities=36% Similarity=0.546 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 007691 260 EKLDEGMATLIDAYSNLGKEVNNLRDEA 287 (593)
Q Consensus 260 ~~l~~g~a~~~esy~~l~~~~ekl~~~t 287 (593)
+++.+.+.++.+.|.-+..++++++.+.
T Consensus 77 ~~~~~~i~r~~eey~~Lk~~in~~R~e~ 104 (230)
T PF10146_consen 77 NKRQEKIQRLYEEYKPLKDEINELRKEY 104 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667889999999999999988863
No 58
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=56.97 E-value=1.5e+02 Score=32.43 Aligned_cols=44 Identities=14% Similarity=0.238 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 007691 253 EGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISK 296 (593)
Q Consensus 253 e~q~~m~~~l~~g~a~~~esy~~l~~~~ekl~~~t~~i~~ei~~ 296 (593)
..|.+|...++..-..|..--+++.+.++.+......|+.+|.+
T Consensus 343 ~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~i~~n~~~le~Ri~~ 386 (388)
T PF04912_consen 343 SQQSDLQSQLKKWEELLNKVEEKFKENMETIEKNVKKLEERIAK 386 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333333333333333333333445555555555555555554
No 59
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=56.21 E-value=3.4e+02 Score=30.60 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHhhHH
Q 007691 260 EKLDEGMATLIDAYSNLGK 278 (593)
Q Consensus 260 ~~l~~g~a~~~esy~~l~~ 278 (593)
+.|+++-+.|.++|+.|..
T Consensus 270 ~eIk~~q~~Leesye~Lke 288 (455)
T KOG3850|consen 270 REIKETQALLEESYERLKE 288 (455)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3466777788888877665
No 60
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=55.61 E-value=1.8e+02 Score=27.14 Aligned_cols=66 Identities=14% Similarity=0.231 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHhhhhHHHHHH-HhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 007691 208 SIDHRVQNVAQTAKGVRDLMD-ILSRHSEVVYNQSKEIAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVN 281 (593)
Q Consensus 208 s~~~Q~~~laet~k~v~~~i~-~l~~~s~~i~Eq~~eIa~sQ~eL~e~q~~m~~~l~~g~a~~~esy~~l~~~~e 281 (593)
.+..+..+|....+.|..+|. -+..+...+..+...+...+.. -..+..++..+..+|+.|.+++-
T Consensus 30 d~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~--------l~~v~~~v~~L~~s~~RL~~eV~ 96 (132)
T PF10392_consen 30 DISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESV--------LQAVRSSVESLQSSYERLRSEVI 96 (132)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444555555555555555 3456667777777766554432 34455666677777766665543
No 61
>PRK05260 condesin subunit F; Provisional
Probab=55.54 E-value=3.6e+02 Score=30.63 Aligned_cols=77 Identities=25% Similarity=0.281 Sum_probs=47.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHH---------Hh-hhhhhhcchhhhHHHHHHHHHhh
Q 007691 151 TNSICYQLQAHGFQYETERLVNELKKSADYTEHKLEIIEEKSDTL---------LQ-SSNQIHDSLDSIDHRVQNVAQTA 220 (593)
Q Consensus 151 t~sIC~~Lq~q~fq~~TE~tVnkL~~sS~~a~~~Le~l~e~qe~L---------l~-~~~~~~dsL~s~~~Q~~~laet~ 220 (593)
+.-+=||+++..|- ++++==.|+--+.+..+.++...+..++= ++ +++ |-+++|+..|.-+-+.+
T Consensus 108 ~gi~dyyirqrefs--~l~LS~qls~va~El~~a~~aA~e~gd~~~Wr~~V~a~LkySVa---eifd~Idl~QR~mDeqQ 182 (440)
T PRK05260 108 IGITDYYIRQREFS--TLRLSMQLSIVAGELKRAADAAEEGGDEFHWRRNVFAPLKYSVA---EIFDSIDLTQRLMDEQQ 182 (440)
T ss_pred ccchHHHHhhHHHh--HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhHhcCcCcHH---HHHhhhhhHHHHHHHHH
Confidence 34456899999998 77777777777777777676665554321 21 332 34445566665555556
Q ss_pred hhHHHHHHHhhh
Q 007691 221 KGVRDLMDILSR 232 (593)
Q Consensus 221 k~v~~~i~~l~~ 232 (593)
.+|+..|..++.
T Consensus 183 ~~vk~eIA~LL~ 194 (440)
T PRK05260 183 QQVKDDIAQLLN 194 (440)
T ss_pred HHHHHHHHHHHH
Confidence 666666654443
No 62
>PHA02562 46 endonuclease subunit; Provisional
Probab=54.98 E-value=3.5e+02 Score=30.35 Aligned_cols=16 Identities=13% Similarity=0.316 Sum_probs=7.4
Q ss_pred hhHHHHHHHHHHHhhh
Q 007691 514 LNYQMLQTVLEKINGM 529 (593)
Q Consensus 514 lN~qlL~~l~~k~~~~ 529 (593)
+.-.....+.+-++.+
T Consensus 510 ld~~~~~~~~~~l~~~ 525 (562)
T PHA02562 510 LDAEGTKALLSILDSL 525 (562)
T ss_pred cchhHHHHHHHHHHhC
Confidence 4444444444444444
No 63
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=54.71 E-value=1.3e+02 Score=30.89 Aligned_cols=23 Identities=13% Similarity=0.154 Sum_probs=11.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Q 007691 397 QEAFESKQASMFIALDKLFALHN 419 (593)
Q Consensus 397 qe~~~~~q~~vf~~Ld~l~~lhn 419 (593)
.+........|=.+=+|+-...+
T Consensus 201 ~~~~d~n~~~l~~~~~rl~~~~~ 223 (251)
T PF09753_consen 201 EEGLDRNLSSLKRESKRLKEHSS 223 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444445455566655444
No 64
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=53.21 E-value=3.6e+02 Score=29.95 Aligned_cols=21 Identities=14% Similarity=0.436 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 007691 279 EVNNLRDEAIEIEKEISKAGD 299 (593)
Q Consensus 279 ~~ekl~~~t~~i~~ei~~~g~ 299 (593)
.+.+|+++-..+..++..++.
T Consensus 286 ~i~~Lr~~~~~~~~~~~~l~~ 306 (458)
T COG3206 286 TIQDLRQQYAQVRQQIADLST 306 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555544444444444333
No 65
>PLN03223 Polycystin cation channel protein; Provisional
Probab=49.37 E-value=4.8e+02 Score=34.00 Aligned_cols=30 Identities=17% Similarity=0.263 Sum_probs=18.0
Q ss_pred hcchhhhHHHHHHHHHhhhhHHHHHHHhhh
Q 007691 203 HDSLDSIDHRVQNVAQTAKGVRDLMDILSR 232 (593)
Q Consensus 203 ~dsL~s~~~Q~~~laet~k~v~~~i~~l~~ 232 (593)
+++|+++-.|+--|..++-++..+|+-|..
T Consensus 777 ~~~l~~~~~~v~~~~t~q~~~~~~~~~~~~ 806 (1634)
T PLN03223 777 AATLTNILTQVGTLSTTQTSLDTQIETLKT 806 (1634)
T ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHHHHH
Confidence 556666666666666666666666654443
No 66
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=48.76 E-value=5.8e+02 Score=31.06 Aligned_cols=6 Identities=33% Similarity=0.573 Sum_probs=2.3
Q ss_pred HHHHHH
Q 007691 491 SLFVLL 496 (593)
Q Consensus 491 ~~f~~~ 496 (593)
..|+.+
T Consensus 575 ~tflpl 580 (1164)
T TIGR02169 575 ATFLPL 580 (1164)
T ss_pred eeeccH
Confidence 334433
No 67
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=48.70 E-value=3.9e+02 Score=31.40 Aligned_cols=136 Identities=19% Similarity=0.300 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-----HHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhhhhhhhcc
Q 007691 248 QTELQEGQVRIKEKLDEGMATLIDAYSNLGKE-----VNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIGSMAGDS 322 (593)
Q Consensus 248 Q~eL~e~q~~m~~~l~~g~a~~~esy~~l~~~-----~ekl~~~t~~i~~ei~~~g~~l~~~m~~lq~~a~~I~~~~~~S 322 (593)
++-|+.+=.+.=.|+++|++.+.+-|+.+... =||+. .||-+||++++. +--.+-.-| ++++|.+.
T Consensus 3 ~RKLq~eIdr~lkKv~Egve~Fd~i~ek~~~~~n~sqkeK~e---~DLKkEIKKLQR-lRdQIKtW~-ss~dIKDK---- 73 (575)
T KOG2150|consen 3 KRKLQQEIDRCLKKVDEGVEIFDEIYEKLHSANNVSQKEKLE---SDLKKEIKKLQR-LRDQIKTWQ-SSSDIKDK---- 73 (575)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCChhHHHHHH---HHHHHHHHHHHH-HHHHHHhhh-cccccccH----
Confidence 34454555566678899999999999877643 23332 378889998665 333444444 34566653
Q ss_pred hHHHHHHhhchhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q 007691 323 LDKQQQLLHGQSTALESLQLLTKFQSEALAESRNTLQELAEYGHKQQEELLKRQEQLQEVHDHLFKNSRSILAAQEAFES 402 (593)
Q Consensus 323 LenQ~~LL~gQ~~a~~~L~~l~~~q~~aleesr~t~q~la~~~~~qqeell~~q~ql~~~h~~l~~~s~sil~aqe~~~~ 402 (593)
..|++.=..--. ... +.+|.|.-..|= ++...|..+++.|==++++=+...+-|-....+.=...+.|++
T Consensus 74 ----~~L~d~RrlIE~---~ME--rfK~vEke~KtK-a~SkegL~~~~klDPkEkek~d~~~wi~~~ideLe~q~d~~ea 143 (575)
T KOG2150|consen 74 ----DSLLDNRRLIEQ---RME--RFKAVEKEMKTK-AFSKEGLSAAEKLDPKEKEKRDTMDWISNQIDELERQVDSFEA 143 (575)
T ss_pred ----HHHHHHHHHHHH---HHH--HHHHHHHHhhcc-ccchhhccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233322110000 111 345665555544 3556677777777555555555555443333333334444554
No 68
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=47.21 E-value=6.4e+02 Score=31.12 Aligned_cols=43 Identities=19% Similarity=0.202 Sum_probs=30.2
Q ss_pred HHHhhhhHHHHH--HHHHHHHHhHHHHHHHHHHHHHHhHHHHhhh
Q 007691 157 QLQAHGFQYETE--RLVNELKKSADYTEHKLEIIEEKSDTLLQSS 199 (593)
Q Consensus 157 ~Lq~q~fq~~TE--~tVnkL~~sS~~a~~~Le~l~e~qe~Ll~~~ 199 (593)
||--+.|+.+.. +-|+.|..++....+-+-.+++..+++.++.
T Consensus 826 ~L~rkr~~~ri~~~~K~~~l~kns~k~~ei~s~lke~r~e~~~~~ 870 (1259)
T KOG0163|consen 826 YLARKRHRPRIAGIRKINALLKNSLKTIEILSRLKEGREEIISGA 870 (1259)
T ss_pred HHHHhhhchHHHHHHHHHHHHHhhHHHHHHHHHHhcchHHHHhhh
Confidence 444455555544 4478888888888888888888888777653
No 69
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=46.33 E-value=3.7e+02 Score=28.14 Aligned_cols=50 Identities=24% Similarity=0.351 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 007691 244 IAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISK 296 (593)
Q Consensus 244 Ia~sQ~eL~e~q~~m~~~l~~g~a~~~esy~~l~~~~ekl~~~t~~i~~ei~~ 296 (593)
|..+|++= -..=...|++-++........+..++++|+.+.+.|=++|+=
T Consensus 83 IVtsQRDR---FR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRy 132 (248)
T PF08172_consen 83 IVTSQRDR---FRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRY 132 (248)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666654 222234556666677777888889999999999988888887
No 70
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=46.29 E-value=4.9e+02 Score=29.54 Aligned_cols=156 Identities=17% Similarity=0.201 Sum_probs=0.0
Q ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH
Q 007691 230 LSRHSEVVYNQSKEIAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQ 309 (593)
Q Consensus 230 l~~~s~~i~Eq~~eIa~sQ~eL~e~q~~m~~~l~~g~a~~~esy~~l~~~~ekl~~~t~~i~~ei~~~g~~l~~~m~~lq 309 (593)
+.+-..+|-+..++|..++.+.+.-+..++ .++..++.+.........+++++..+-.++...+.+
T Consensus 40 l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk-~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~------------- 105 (420)
T COG4942 40 LKQIQKEIAALEKKIREQQDQRAKLEKQLK-SLETEIASLEAQLIETADDLKKLRKQIADLNARLNA------------- 105 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHH-------------
Q ss_pred HHHhhhhhhhhcchHHHHHHhhchhhHHHhhHHHHHH-----------HHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHH
Q 007691 310 RKADNIGSMAGDSLDKQQQLLHGQSTALESLQLLTKF-----------QSEALAESRNTLQELAEYGHKQQEELLKRQEQ 378 (593)
Q Consensus 310 ~~a~~I~~~~~~SLenQ~~LL~gQ~~a~~~L~~l~~~-----------q~~aleesr~t~q~la~~~~~qqeell~~q~q 378 (593)
|+.|+ -..+...-.-|..++.+ +..|+...|-++ |-..-..+++++=+.
T Consensus 106 -------------l~~q~--r~qr~~La~~L~A~~r~g~~p~~~ll~~~eda~~~~R~ai-----~~~~l~~~~~~~i~~ 165 (420)
T COG4942 106 -------------LEVQE--REQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAI-----YYGALNPARAERIDA 165 (420)
T ss_pred -------------HHHHH--HHHHHHHHHHHHHHHhccCCCCchhhcChhhhhHHHHHHH-----HHHHhhHHHHHHHHH
Q ss_pred HHHHHHHhhhchHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 007691 379 LQEVHDHLFKNSRSILAAQEAFESKQASMFIALDKLFALHN 419 (593)
Q Consensus 379 l~~~h~~l~~~s~sil~aqe~~~~~q~~vf~~Ld~l~~lhn 419 (593)
|......|..-...|-..|++..+.....-+-..++-.+..
T Consensus 166 l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~ 206 (420)
T COG4942 166 LKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLE 206 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 71
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=46.28 E-value=5.2e+02 Score=29.84 Aligned_cols=196 Identities=16% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHhh----------hhhhhcchhhhHHHHHHHHHhhhhHHHHHHHhhhh
Q 007691 164 QYETERLVNELKKSADYTEHKLEIIEEKSDTLLQS----------SNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRH 233 (593)
Q Consensus 164 q~~TE~tVnkL~~sS~~a~~~Le~l~e~qe~Ll~~----------~~~~~dsL~s~~~Q~~~laet~k~v~~~i~~l~~~ 233 (593)
+...+....++...-..+.+....+...-+.|-++ ......-|..++.+...+.+...........+...
T Consensus 305 ~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~ 384 (569)
T PRK04778 305 RKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEE 384 (569)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Q ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHhhhhhhhhhhHHHHHHH
Q 007691 234 SEVVYNQSKEIAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDE-AIEIEKEISKAGDAMFSSMEQLQRKA 312 (593)
Q Consensus 234 s~~i~Eq~~eIa~sQ~eL~e~q~~m~~~l~~g~a~~~esy~~l~~~~ekl~~~-t~~i~~ei~~~g~~l~~~m~~lq~~a 312 (593)
-+.+.++..+|...|.++.+.-..++....++-..+.+-=..+..--..+... --.|.......=.....++..|...-
T Consensus 385 leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L 464 (569)
T PRK04778 385 LEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEEL 464 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHh
Q ss_pred hhhhhhhhcchHHHHHHhhchhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHhHH
Q 007691 313 DNIGSMAGDSLDKQQQLLHGQSTALESLQLLTKFQSEALAESRNTLQELAEYGHK 367 (593)
Q Consensus 313 ~~I~~~~~~SLenQ~~LL~gQ~~a~~~L~~l~~~q~~aleesr~t~q~la~~~~~ 367 (593)
+. |.+=..+++.+-. .+-+.++.|.+ |..-|.++...+..+.+|+.|
T Consensus 465 ~~-g~VNm~ai~~e~~------e~~~~~~~L~~-q~~dL~~~a~~lE~~Iqy~nR 511 (569)
T PRK04778 465 EE-KPINMEAVNRLLE------EATEDVETLEE-ETEELVENATLTEQLIQYANR 511 (569)
T ss_pred cc-CCCCHHHHHHHHH------HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
No 72
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=45.56 E-value=7.6e+02 Score=31.54 Aligned_cols=14 Identities=14% Similarity=0.401 Sum_probs=8.6
Q ss_pred cCCCCCCCCCCccc
Q 007691 115 SGRPAFPNCDQKSA 128 (593)
Q Consensus 115 SGR~~fp~C~~~~s 128 (593)
...+..|.|...++
T Consensus 675 ~~~~~C~LC~R~f~ 688 (1311)
T TIGR00606 675 ENQSCCPVCQRVFQ 688 (1311)
T ss_pred ccCCcCCCCCCCCC
Confidence 45566677776653
No 73
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=45.51 E-value=57 Score=29.22 Aligned_cols=48 Identities=10% Similarity=0.078 Sum_probs=38.5
Q ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHhhhhh
Q 007691 480 EQQTWIVSCDRSLFVLLAAIQLLHSIFTYRDYEILNYQMLQTVLEKINGMER 531 (593)
Q Consensus 480 ~~~~w~~~~~R~~f~~~~~v~ll~~i~~yrDye~lN~qlL~~l~~k~~~~~~ 531 (593)
..++| .=..|.++++..+.+.++||+|.+..=.-+..+|.|--+.+.+
T Consensus 39 ~lP~~----~Lv~fG~Ysl~~lgy~v~tFnDcpeA~~eL~~eI~eAK~dLr~ 86 (91)
T PF08285_consen 39 YLPFY----ALVSFGCYSLFTLGYGVATFNDCPEAAKELQKEIKEAKADLRK 86 (91)
T ss_pred HhhHH----HHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 44455 5578999999999999999999999888787888776665554
No 74
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=44.42 E-value=19 Score=30.40 Aligned_cols=16 Identities=38% Similarity=0.412 Sum_probs=8.6
Q ss_pred cccccccccCCCCCCC
Q 007691 552 TDLQEEVDDYEDPNYI 567 (593)
Q Consensus 552 ~~~~~~~d~~~d~~~~ 567 (593)
++|..+++...||+||
T Consensus 48 ~~L~~ei~~l~~~~rI 63 (85)
T TIGR02209 48 RDLQLEVAELSRHERI 63 (85)
T ss_pred HHHHHHHHHHcCHHHH
Confidence 3455555555566654
No 75
>COG1511 Predicted membrane protein [Function unknown]
Probab=43.67 E-value=6.6e+02 Score=30.31 Aligned_cols=39 Identities=13% Similarity=0.166 Sum_probs=28.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhHHHHhhhhhhhcch
Q 007691 168 ERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSL 206 (593)
Q Consensus 168 E~tVnkL~~sS~~a~~~Le~l~e~qe~Ll~~~~~~~dsL 206 (593)
=.+|+++......+.+.+..+.+.-.++....++..+.+
T Consensus 170 ~~~i~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~ 208 (780)
T COG1511 170 FPTIYDLGGGVKGAADGAEKLKDGTDEASNGNKKLSDLL 208 (780)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhHH
Confidence 456778888888888888888887777777666655543
No 76
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=43.10 E-value=7.9e+02 Score=30.99 Aligned_cols=125 Identities=20% Similarity=0.310 Sum_probs=66.2
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHhh-----hhhhhcchhhhHHHHHHHHHhhhhHHHHHHHh
Q 007691 156 YQLQAHGFQYETERLVNELKKSADYTEHKLEIIEEKSDTLLQS-----SNQIHDSLDSIDHRVQNVAQTAKGVRDLMDIL 230 (593)
Q Consensus 156 ~~Lq~q~fq~~TE~tVnkL~~sS~~a~~~Le~l~e~qe~Ll~~-----~~~~~dsL~s~~~Q~~~laet~k~v~~~i~~l 230 (593)
|-.|+++-.+-.|..+++|-.- .+.|..+...|++|... .+.+..+|+.+..+ +.|.=+++..
T Consensus 867 ~~~qs~qln~p~ed~~~~l~~q----Qe~~a~l~~sQ~el~~~l~~ql~g~le~~l~~~iEk------~lks~~d~~~-- 934 (1283)
T KOG1916|consen 867 FNEQSQQLNHPMEDLLPQLLAQ----QETMAQLMASQKELQRQLSNQLTGPLEVALGRMIEK------SLKSNADALW-- 934 (1283)
T ss_pred HHHHHhhhcCChhhHHHHHHHH----HHHHHHHHHhHHHHHHHHHHhhcchHHHHHHHHHHH------HHHhhHHHHH--
Confidence 4456666666777777777543 34444444445444321 11122333322222 1222222211
Q ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh-hhhhhhhhhHHHH
Q 007691 231 SRHSEVVYNQSKEIAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISK-AGDAMFSSMEQLQ 309 (593)
Q Consensus 231 ~~~s~~i~Eq~~eIa~sQ~eL~e~q~~m~~~l~~g~a~~~esy~~l~~~~ekl~~~t~~i~~ei~~-~g~~l~~~m~~lq 309 (593)
+ -...+.+..+.++++.|.++...+ .+.+.+++...-+.+ |..||.+ ||+.++..|.-++
T Consensus 935 -~------rl~e~la~~e~~~r~~~~qi~q~l----------tq~~s~~~~~~~e~t--i~~El~~tv~P~v~rs~~p~~ 995 (1283)
T KOG1916|consen 935 -A------RLQEELAKNEKALRDLQQQITQQL----------TQFLSKELNAMFEKT--IKKELAKTVGPCVARSVEPVI 995 (1283)
T ss_pred -H------HHHHHHHhhhhhhhHHHHHHHHHH----------HHHHHHHHHHHHHHH--HHHHHHhhcchhhhhhhHHHH
Confidence 0 123346777777777777664433 344455555554444 5677887 9999998888876
Q ss_pred HH
Q 007691 310 RK 311 (593)
Q Consensus 310 ~~ 311 (593)
.+
T Consensus 996 ~q 997 (1283)
T KOG1916|consen 996 EQ 997 (1283)
T ss_pred HH
Confidence 54
No 77
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=42.85 E-value=3.7e+02 Score=27.20 Aligned_cols=14 Identities=14% Similarity=0.515 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 007691 404 QASMFIALDKLFAL 417 (593)
Q Consensus 404 q~~vf~~Ld~l~~l 417 (593)
+..++.-|..||-+
T Consensus 146 r~~l~~~l~~ifpI 159 (302)
T PF10186_consen 146 RRQLIQELSEIFPI 159 (302)
T ss_pred HHHHHHHHHHHhCc
Confidence 33344444444443
No 78
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=42.63 E-value=5.8e+02 Score=29.35 Aligned_cols=54 Identities=22% Similarity=0.182 Sum_probs=28.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhhhhhhhcchHHHHHH
Q 007691 272 AYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIGSMAGDSLDKQQQL 329 (593)
Q Consensus 272 sy~~l~~~~ekl~~~t~~i~~ei~~~g~~l~~~m~~lq~~a~~I~~~~~~SLenQ~~L 329 (593)
..+.|-+..+-.++...+++++.+..-.++-.++++||+.-.||- --|+.|++|
T Consensus 404 ~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlm----f~le~qqkl 457 (493)
T KOG0804|consen 404 ENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLM----FFLEAQQKL 457 (493)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh----eehhhhhhh
Confidence 334444444444444455555555555556666667776555543 235555554
No 79
>PF05802 EspB: Enterobacterial EspB protein
Probab=42.47 E-value=2.6e+02 Score=30.24 Aligned_cols=68 Identities=18% Similarity=0.362 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHhhhhhhhhhhHHHHHHHhhhhhh
Q 007691 251 LQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEK-EISKAGDAMFSSMEQLQRKADNIGSM 318 (593)
Q Consensus 251 L~e~q~~m~~~l~~g~a~~~esy~~l~~~~ekl~~~t~~i~~-ei~~~g~~l~~~m~~lq~~a~~I~~~ 318 (593)
|.||.+-+-..|.+.+..-++-+++-.|.+|++++-.+++-+ .+++.++.+++++.+.-.++.|+.+.
T Consensus 237 laeg~ktlptt~sesvks~h~~~eqr~ks~e~~q~~nl~~ykq~vrr~qddi~~rlr~~t~~~rdl~~~ 305 (317)
T PF05802_consen 237 LAEGTKTLPTTISESVKSNHEINEQRAKSVENFQQGNLELYKQDVRRTQDDITSRLRDMTTAARDLTDL 305 (317)
T ss_pred hhcccccCCchHHHhhcccchhhHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666677777777788888889999999998887754 58888899999998888777776653
No 80
>PF09074 Mer2: Mer2; InterPro: IPR015159 Meiotic recombination 2 protein (Mer2) also known as Rec107, forms part of a complex that is required for meiotic double strand DNA break formation. Mer2 increases in abundance and is phosphorylated during the prophase phase of cell division []. MER2 is not required for mitosis and mitotic DNA repair mechanisms and is a component of the MER2-MEI4-REC114 complex which seems to be required for meiotic double-strand break (DSB) formation []. ; GO: 0007131 reciprocal meiotic recombination, 0000794 condensed nuclear chromosome
Probab=42.15 E-value=3.9e+02 Score=27.23 Aligned_cols=32 Identities=16% Similarity=0.198 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 007691 254 GQVRIKEKLDEGMATLIDAYSNLGKEVNNLRD 285 (593)
Q Consensus 254 ~q~~m~~~l~~g~a~~~esy~~l~~~~ekl~~ 285 (593)
+-..+|++.+.=+..|.+.+..|-..+++|..
T Consensus 38 ESidLrEks~~L~~lL~~ns~~L~~~~~~Ln~ 69 (190)
T PF09074_consen 38 ESIDLREKSSKLINLLNQNSKELCSVQEQLNE 69 (190)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666566666666666555555544
No 81
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=41.69 E-value=6.4e+02 Score=29.58 Aligned_cols=178 Identities=17% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhhhhhhhcchHHHH
Q 007691 248 QTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIGSMAGDSLDKQQ 327 (593)
Q Consensus 248 Q~eL~e~q~~m~~~l~~g~a~~~esy~~l~~~~ekl~~~t~~i~~ei~~~g~~l~~~m~~lq~~a~~I~~~~~~SLenQ~ 327 (593)
..++.....+.+..+-+....+.+..+.++..++++.+-..++..++...-.....-++.- ..|.+|+
T Consensus 22 R~~iE~~~l~~~~~~L~~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~------------~~L~~~~ 89 (618)
T PF06419_consen 22 RSDIEKRLLKINQEFLKEFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEA------------SELREQK 89 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHH
Q ss_pred HHhhchhhHHHhhH---HHHHHHHHHHHHh--HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q 007691 328 QLLHGQSTALESLQ---LLTKFQSEALAES--RNTLQELAEYGHKQQEELLKRQEQLQEVHDHLFKNSRSILAAQEAFES 402 (593)
Q Consensus 328 ~LL~gQ~~a~~~L~---~l~~~q~~alees--r~t~q~la~~~~~qqeell~~q~ql~~~h~~l~~~s~sil~aqe~~~~ 402 (593)
+.+.-.++.+.... .|.+.-..+|..+ .-.-
T Consensus 90 ~~~~~k~~ll~~f~~~f~Ls~~E~~~L~~~~~~v~~-------------------------------------------- 125 (618)
T PF06419_consen 90 EELELKKKLLDAFLERFTLSEEEEDALTSGEEPVDD-------------------------------------------- 125 (618)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCCCCH--------------------------------------------
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCccccccchhhHHHHHHHHHHHHHHHHhcccchhhhh
Q 007691 403 KQASMFIALDKLFALHNAMLLESRMIKAFFIYSLSIFIIYMLTSTKQTYTVRPRLYIGLCLTFLIEVVTFRFTTYDIEQQ 482 (593)
Q Consensus 403 ~q~~vf~~Ld~l~~lhn~iL~E~~~~ksf~fY~~~~~~iymlTStk~T~saR~~L~~lL~~~l~iEr~l~~~~~~~~~~~ 482 (593)
..|.+|+|+...|.- +-++|++. .-|.-+=+.=-++-..|++.-| +++
T Consensus 126 ---~FF~~L~r~~~I~~~-------------------c~~LL~~~----~~~ag~~iM~~~~~~~e~a~er-----l~~- 173 (618)
T PF06419_consen 126 ---EFFDALDRVQKIHED-------------------CKILLSTE----NQRAGLEIMEQMSKYLERAYER-----LYR- 173 (618)
T ss_pred ---HHHHHHHHHHHHHHH-------------------HHHHhCCC----CchHHHHHHHHHHHHHHHHHHH-----HHH-
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHhhhhhhh
Q 007691 483 TWIVSCDRSLFVLLAAIQLLHSIFTYRDYEILNYQMLQTVLEKINGMERDK 533 (593)
Q Consensus 483 ~w~~~~~R~~f~~~~~v~ll~~i~~yrDye~lN~qlL~~l~~k~~~~~~~~ 533 (593)
|+..-||.+ +..|......+.+-++.+.+..
T Consensus 174 -w~q~e~~~l-------------------~~~~~~~~~~l~~al~~L~~rp 204 (618)
T PF06419_consen 174 -WVQRECRSL-------------------NLDNPEVSPLLRRALRYLRERP 204 (618)
T ss_pred -HHHHHHhhh-------------------hhcCcccchHHHHHHHHHhcCh
No 82
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=41.38 E-value=4.1e+02 Score=27.20 Aligned_cols=93 Identities=11% Similarity=0.229 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHhhhhhhhcchhhhHHHHHHHHHhhhhHHHHHHHhhhhhHHHHhhhHHH
Q 007691 165 YETERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYNQSKEI 244 (593)
Q Consensus 165 ~~TE~tVnkL~~sS~~a~~~Le~l~e~qe~Ll~~~~~~~dsL~s~~~Q~~~laet~k~v~~~i~~l~~~s~~i~Eq~~eI 244 (593)
..+..++.+....+....++...+.+....+...-..+. .+.+++..-.+.+...+++..+.-+.+.++..+|
T Consensus 24 ~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~-------~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 24 DQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLE-------REIENLEVYNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666677777777777777776555444 4444444444555555555555555666666677
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 007691 245 AASQTELQEGQVRIKEKLDE 264 (593)
Q Consensus 245 a~sQ~eL~e~q~~m~~~l~~ 264 (593)
...+.++.-...+|-+.|+.
T Consensus 97 ~~~~~~l~p~m~~m~~~L~~ 116 (251)
T PF11932_consen 97 EETRQELVPLMEQMIDELEQ 116 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777776666666555544
No 83
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=40.92 E-value=4.5e+02 Score=27.56 Aligned_cols=34 Identities=29% Similarity=0.354 Sum_probs=21.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhHHHHhhhhhhhc
Q 007691 171 VNELKKSADYTEHKLEIIEEKSDTLLQSSNQIHD 204 (593)
Q Consensus 171 VnkL~~sS~~a~~~Le~l~e~qe~Ll~~~~~~~d 204 (593)
+++|.....-....|..+.++++...+..+++-.
T Consensus 45 ~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~s 78 (230)
T PF03904_consen 45 IQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKS 78 (230)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666677777777666665555333
No 84
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=40.75 E-value=1e+02 Score=35.08 Aligned_cols=25 Identities=12% Similarity=0.032 Sum_probs=20.8
Q ss_pred hhhHHHHHHHHHHHHHHHHhcccch
Q 007691 454 RPRLYIGLCLTFLIEVVTFRFTTYD 478 (593)
Q Consensus 454 R~~L~~lL~~~l~iEr~l~~~~~~~ 478 (593)
++.+|.+.++.+.+.|+++-+.-.|
T Consensus 222 ~G~lf~lYli~Ygi~RF~iEflR~d 246 (460)
T PRK13108 222 HGRLFGFYVAFYCAGRFCVELLRDD 246 (460)
T ss_pred CchHHHHHHHHHHHHHHHhhhhccC
Confidence 4779999999999999999986443
No 85
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=40.32 E-value=4.1e+02 Score=26.92 Aligned_cols=12 Identities=8% Similarity=0.166 Sum_probs=6.0
Q ss_pred hHHHhhHHHHHH
Q 007691 335 TALESLQLLTKF 346 (593)
Q Consensus 335 ~a~~~L~~l~~~ 346 (593)
..+..|..++-+
T Consensus 148 ~l~~~l~~ifpI 159 (302)
T PF10186_consen 148 QLIQELSEIFPI 159 (302)
T ss_pred HHHHHHHHHhCc
Confidence 344555555553
No 86
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=40.04 E-value=3.9e+02 Score=26.59 Aligned_cols=54 Identities=22% Similarity=0.260 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhh-hhhhhhcchHHHHHHh
Q 007691 276 LGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADN-IGSMAGDSLDKQQQLL 330 (593)
Q Consensus 276 l~~~~ekl~~~t~~i~~ei~~~g~~l~~~m~~lq~~a~~-I~~~~~~SLenQ~~LL 330 (593)
+..-+.++.....++.+.|++.++.+. .+..++++.+. +.+....+.+.+.+|-
T Consensus 98 V~~P~~~~~~~~~~i~k~IkKR~~k~l-Dyd~~~~k~~k~~~~k~~~~~kd~~kl~ 152 (216)
T cd07599 98 VILPAKELKKYIKKIRKTIKKRDHKKL-DYDKLQNKLNKLLQKKKELSLKDEKQLA 152 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhcCCCCChhHHHHHH
Confidence 444455555566666677777666544 45555555555 5444445666665544
No 87
>PRK04863 mukB cell division protein MukB; Provisional
Probab=39.36 E-value=1e+03 Score=31.27 Aligned_cols=28 Identities=36% Similarity=0.375 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHHHHH
Q 007691 374 KRQEQLQEVHDHLFKNSRSILAAQEAFE 401 (593)
Q Consensus 374 ~~q~ql~~~h~~l~~~s~sil~aqe~~~ 401 (593)
.+++||.+-+..|..-.-.|+.||++++
T Consensus 586 ~~~~qL~~~i~~l~~~ap~W~~a~~al~ 613 (1486)
T PRK04863 586 QQLEQLQARIQRLAARAPAWLAAQDALA 613 (1486)
T ss_pred HHHHHHHHHHHHHHHhChHHHhhHHHHH
Confidence 3444555555555555556666666665
No 88
>PRK10884 SH3 domain-containing protein; Provisional
Probab=39.33 E-value=4e+02 Score=27.14 Aligned_cols=31 Identities=6% Similarity=0.102 Sum_probs=19.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 007691 266 MATLIDAYSNLGKEVNNLRDEAIEIEKEISK 296 (593)
Q Consensus 266 ~a~~~esy~~l~~~~ekl~~~t~~i~~ei~~ 296 (593)
+..+.+.|+.+.++++.++++...++.++..
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~ 164 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQKKVDAANLQLDD 164 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446666666777777666666555555544
No 89
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=38.09 E-value=9.4e+02 Score=30.48 Aligned_cols=61 Identities=15% Similarity=0.003 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhhhchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 007691 376 QEQLQEVHDHLFKNSRSILAAQEAFESKQASMFIALDKLFALHNAMLLESRMIKAFFIYSL 436 (593)
Q Consensus 376 q~ql~~~h~~l~~~s~sil~aqe~~~~~q~~vf~~Ld~l~~lhn~iL~E~~~~ksf~fY~~ 436 (593)
.+++.+.++.+-.-..+.....+.++++=..+-+.++....=|...+.|.-..+.-.-|+=
T Consensus 824 ~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~d 884 (1174)
T KOG0933|consen 824 HEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDID 884 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhh
Confidence 3444444443333333455566677777777777788888888888888777777655553
No 90
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=37.85 E-value=2.9e+02 Score=26.28 Aligned_cols=22 Identities=5% Similarity=0.199 Sum_probs=10.7
Q ss_pred hhhHHHH-HHHHHhhhhHHHHHH
Q 007691 207 DSIDHRV-QNVAQTAKGVRDLMD 228 (593)
Q Consensus 207 ~s~~~Q~-~~laet~k~v~~~i~ 228 (593)
+-++--| .+++.+..+|..|++
T Consensus 31 sD~M~vTrr~m~~A~~~v~kql~ 53 (126)
T PF07889_consen 31 SDLMFVTRRSMSDAVASVSKQLE 53 (126)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHH
Confidence 3344443 345555555555554
No 91
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.40 E-value=5.1e+02 Score=27.16 Aligned_cols=44 Identities=27% Similarity=0.326 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhhchH---HHHH-HHHHHH--HhHHHHH-HHHHHHHHHHHH
Q 007691 377 EQLQEVHDHLFKNSR---SILA-AQEAFE--SKQASMF-IALDKLFALHNA 420 (593)
Q Consensus 377 ~ql~~~h~~l~~~s~---sil~-aqe~~~--~~q~~vf-~~Ld~l~~lhn~ 420 (593)
+.++..|+|+=.+.+ ..++ ||++-+ ..|..+| .+-.|+..+-+.
T Consensus 142 e~~lkE~~~in~s~~~vde~Is~A~aTre~l~~Qrs~l~~i~~k~~~~a~r 192 (231)
T KOG3208|consen 142 EMYLKEHDHINNSIRLVDELISQAQATRENLHSQRSVLGGINNKVNNIANR 192 (231)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 555667777633333 4445 665554 5666676 344555544443
No 92
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.18 E-value=1e+03 Score=30.52 Aligned_cols=12 Identities=17% Similarity=0.307 Sum_probs=7.2
Q ss_pred CCchHHHHHHHH
Q 007691 75 SNACWQNAYRHL 86 (593)
Q Consensus 75 ~~~CW~~Al~~L 86 (593)
...|+..++...
T Consensus 661 ~~~~~~k~ie~a 672 (1311)
T TIGR00606 661 ATAVYSQFITQL 672 (1311)
T ss_pred HHHHHHHHHHHH
Confidence 335666666666
No 93
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=37.08 E-value=1.3e+03 Score=31.61 Aligned_cols=55 Identities=22% Similarity=0.299 Sum_probs=28.1
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHhhh---chHHHHHHHHHHHHhHHHHHHHHHHH
Q 007691 360 ELAEYGHKQQEELLKRQEQLQEVHDHLFK---NSRSILAAQEAFESKQASMFIALDKL 414 (593)
Q Consensus 360 ~la~~~~~qqeell~~q~ql~~~h~~l~~---~s~sil~aqe~~~~~q~~vf~~Ld~l 414 (593)
.|.+-|+.---..-++|+.|..+-..|.+ .=-.+|.|=++.-.-+..+-++|.||
T Consensus 1758 ~LI~~ghs~a~tvaewkd~LneaW~~LlELi~tR~q~Laas~elhrf~~D~~E~l~ri 1815 (2473)
T KOG0517|consen 1758 ELIERGHSAAATVAEWKDGLNEAWADLLELIDTRGQKLAASRELHRFHRDAREVLGRI 1815 (2473)
T ss_pred HHHhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34555555555555666666666555533 22355555555544444444444444
No 94
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.06 E-value=5.5e+02 Score=27.44 Aligned_cols=29 Identities=14% Similarity=0.326 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q 007691 280 VNNLRDEAIEIEKEISKAGDAMFSSMEQL 308 (593)
Q Consensus 280 ~ekl~~~t~~i~~ei~~~g~~l~~~m~~l 308 (593)
+.+++++-.++.+.|....+.+-.++-.+
T Consensus 82 ik~l~~eI~~~~~~I~~r~~~l~~raRAm 110 (265)
T COG3883 82 IKKLQKEIAELKENIVERQELLKKRARAM 110 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444333333333333
No 95
>TIGR02131 phaP_Bmeg polyhydroxyalkanoic acid inclusion protein PhaP. This model describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage (see McCool,G.J. and Cannon,M.C, 1999).
Probab=36.78 E-value=4.2e+02 Score=26.01 Aligned_cols=70 Identities=14% Similarity=0.244 Sum_probs=40.8
Q ss_pred HHHhHHHHHHH--HHHHHHHhHHHHhhhhhhhcchhhhHH-------H-HHHHHH-hhhhHHHHHHHhhhhhHHHHhhhH
Q 007691 174 LKKSADYTEHK--LEIIEEKSDTLLQSSNQIHDSLDSIDH-------R-VQNVAQ-TAKGVRDLMDILSRHSEVVYNQSK 242 (593)
Q Consensus 174 L~~sS~~a~~~--Le~l~e~qe~Ll~~~~~~~dsL~s~~~-------Q-~~~lae-t~k~v~~~i~~l~~~s~~i~Eq~~ 242 (593)
|..++..+.++ |+.++..|+-|...+..++..=-.+.. | +++|.. +...+.++|..+...-..+...++
T Consensus 23 lfs~agKQiEQlTLe~L~QQQdalhK~t~gvd~leKel~~~~~~~n~q~te~vkq~tGNsl~Dqi~EWq~k~~E~~~~lh 102 (165)
T TIGR02131 23 LFADAGKQIEQLTLEALEQQQDALHKATEGLDALDKELKAELADFNNKTTDNLKKLAGNALADQIEEWQDKTHEALAHLH 102 (165)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHH
Confidence 45666777776 678888888887766543321112221 1 144433 445677888877766666655555
Q ss_pred H
Q 007691 243 E 243 (593)
Q Consensus 243 e 243 (593)
+
T Consensus 103 q 103 (165)
T TIGR02131 103 E 103 (165)
T ss_pred H
Confidence 5
No 96
>KOG2148 consensus Exocyst protein Sec3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.71 E-value=4.4e+02 Score=31.83 Aligned_cols=122 Identities=18% Similarity=0.208 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHhHHHHHH-------HHHHHHHHhHHHHhhhhhhhcchhhhHHHH---HHHHHhhhhHHHHHHHhhhhhH
Q 007691 166 ETERLVNELKKSADYTEH-------KLEIIEEKSDTLLQSSNQIHDSLDSIDHRV---QNVAQTAKGVRDLMDILSRHSE 235 (593)
Q Consensus 166 ~TE~tVnkL~~sS~~a~~-------~Le~l~e~qe~Ll~~~~~~~dsL~s~~~Q~---~~laet~k~v~~~i~~l~~~s~ 235 (593)
..|..||+|..+-.++.. .|.+-++.-..+.+++..|...-.-++.|- .+|-+-...|-++++.-+.|.+
T Consensus 215 aSE~~Vn~ll~~ldaAl~~vd~~e~~Ld~yediL~hvre~iE~Ieekn~lie~~n~Nn~kL~eEl~kvin~L~vp~shi~ 294 (867)
T KOG2148|consen 215 ASEPLVNELLNGLDAALNEVDDMEEWLDSYEDILRHVREDIESIEEKNNLIEMQNVNNKKLIEELDKVINRLDVPSSHIA 294 (867)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhccchHHHHHHHHHHHHhccCcHHHHH
Confidence 358889999887766543 333444444444555555555444444443 4555666677777775555555
Q ss_pred HHHhh----h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 007691 236 VVYNQ----S-KEIAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAI 288 (593)
Q Consensus 236 ~i~Eq----~-~eIa~sQ~eL~e~q~~m~~~l~~g~a~~~esy~~l~~~~ekl~~~t~ 288 (593)
++.|. . +.|.+--.-.+--+.-|.-.|+-++..+ ++|+...++.+|+++-..
T Consensus 295 aL~egdf~~a~~~ieact~aA~al~q~~~~~ldp~~l~m-~Avkdqr~eleklk~~Fv 351 (867)
T KOG2148|consen 295 ALTEGDFDEADQGIEACTWAAKALRQLMNPNLDPIYLNM-RAVKDQRAELEKLKATFV 351 (867)
T ss_pred hcccCCccccchhHHHHHHHHHHHHHhhcCCCCHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 55441 1 2344443333444455777777777777 588889999999988553
No 97
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=36.35 E-value=5.3e+02 Score=27.06 Aligned_cols=42 Identities=21% Similarity=0.281 Sum_probs=21.2
Q ss_pred HHhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007691 228 DILSRHSEVVYNQSKEIAASQTELQEGQVRIKEKLDEGMATL 269 (593)
Q Consensus 228 ~~l~~~s~~i~Eq~~eIa~sQ~eL~e~q~~m~~~l~~g~a~~ 269 (593)
++|.+.++-+..-..||...|....+.+..++-+|++....+
T Consensus 46 ~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf 87 (230)
T PF03904_consen 46 QELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDF 87 (230)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444455555555555555555555544433333
No 98
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=35.51 E-value=4e+02 Score=25.36 Aligned_cols=10 Identities=20% Similarity=0.571 Sum_probs=4.7
Q ss_pred cchHHHHHHh
Q 007691 321 DSLDKQQQLL 330 (593)
Q Consensus 321 ~SLenQ~~LL 330 (593)
+++..|++.+
T Consensus 107 k~I~~~e~iI 116 (126)
T PF09403_consen 107 KEIAEQEQII 116 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444454444
No 99
>PF11902 DUF3422: Protein of unknown function (DUF3422); InterPro: IPR021830 This family of proteins are functionally uncharacterised. This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 426 to 444 amino acids in length.
Probab=35.20 E-value=7.1e+02 Score=28.17 Aligned_cols=114 Identities=22% Similarity=0.346 Sum_probs=72.3
Q ss_pred hHHHhhHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhH--HHHHHHHH
Q 007691 335 TALESLQLLTKFQSEALAESRNTLQELAEYGHKQQEELLKRQEQLQEVHDHLFKNSRSILAAQEAFESKQ--ASMFIALD 412 (593)
Q Consensus 335 ~a~~~L~~l~~~q~~aleesr~t~q~la~~~~~qqeell~~q~ql~~~h~~l~~~s~sil~aqe~~~~~q--~~vf~~Ld 412 (593)
+-+.|++.+.+|-..=|.-.-.|.++.+ +||++|..-..+.. ++|...=+++-++ ..+.+..|
T Consensus 284 ~~i~g~~tl~eF~~RRl~PAmrTC~a~~-----------~R~~~Ls~rv~Ra~----~LLRTrVdv~le~QN~~LL~SM~ 348 (420)
T PF11902_consen 284 ERIPGYQTLSEFLERRLTPAMRTCEAVE-----------RRQEDLSRRVARAT----DLLRTRVDVELEQQNQDLLASMD 348 (420)
T ss_pred cccCCCCcHHHHHHHHhhHHHHHHHHHH-----------HHHHHHHHHHHHHH----HHHHHHhHHHHHHHHHHHHHHHH
Confidence 4557888999998887777777776655 45555544444333 3444333333222 25788888
Q ss_pred HHHHHHHHH--HHhhhhHHHHHHHHHHHHHHHHhcCcccc-ccchhhHHHHHHHH
Q 007691 413 KLFALHNAM--LLESRMIKAFFIYSLSIFIIYMLTSTKQT-YTVRPRLYIGLCLT 464 (593)
Q Consensus 413 ~l~~lhn~i--L~E~~~~ksf~fY~~~~~~iymlTStk~T-~saR~~L~~lL~~~ 464 (593)
|=..+|=.+ ..|-..+-++-||.+++ +-|++-+.+.. .-.-+.+..++.+=
T Consensus 349 rRa~lQLrLQqtVEGLSVvAIsYY~vgL-~~y~~k~l~~~g~~~~~~l~~g~~vP 402 (420)
T PF11902_consen 349 RRARLQLRLQQTVEGLSVVAISYYVVGL-LGYLLKGLKAAGLPVDPELATGLAVP 402 (420)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHhhHhhcCCCCCHHHHHHHHHH
Confidence 887776666 55778888888888765 56777777765 34444555555443
No 100
>PF05251 UPF0197: Uncharacterised protein family (UPF0197); InterPro: IPR007915 This family of proteins is functionally uncharacterised, but is thought to be a transmembrane protein.
Probab=35.16 E-value=72 Score=28.01 Aligned_cols=38 Identities=32% Similarity=0.500 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhcCccccccchhhHHHHHHHHHHH
Q 007691 430 AFFIYSLSIFIIYMLTSTKQTYTVRPRLYIGLCLTFLI 467 (593)
Q Consensus 430 sf~fY~~~~~~iymlTStk~T~saR~~L~~lL~~~l~i 467 (593)
++-+.+.+.|+||=.||+|++.+.=--+.+.++++++.
T Consensus 25 ~iGl~fta~Ffiyevts~k~~r~i~kEl~~a~vAS~fl 62 (77)
T PF05251_consen 25 AIGLFFTAWFFIYEVTSTKKTRSIAKELLIALVASLFL 62 (77)
T ss_pred HHHHHHHHHHHHHhhhcCcccccHHHHHHHHHHHHHHH
Confidence 44577888999999999999888766666666555443
No 101
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=34.92 E-value=9.9e+02 Score=29.80 Aligned_cols=202 Identities=18% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHhhhhhhhcchhhhHHHHHHHHHhhhhHHHHHHHhhhhhHHHHhhhHH
Q 007691 164 QYETERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYNQSKE 243 (593)
Q Consensus 164 q~~TE~tVnkL~~sS~~a~~~Le~l~e~qe~Ll~~~~~~~dsL~s~~~Q~~~laet~k~v~~~i~~l~~~s~~i~Eq~~e 243 (593)
....++++-.+..........++.....-.+....+..++-.+ .+++..++-...-..++. +....
T Consensus 332 ~~~~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~----~e~q~~~qe~~~e~eqLr----------~elaq 397 (980)
T KOG0980|consen 332 ELQIEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGEL----QEQQREAQENREEQEQLR----------NELAQ 397 (980)
T ss_pred hHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHH----------HHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhhhhhhhcch
Q 007691 244 IAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIGSMAGDSL 323 (593)
Q Consensus 244 Ia~sQ~eL~e~q~~m~~~l~~g~a~~~esy~~l~~~~ekl~~~t~~i~~ei~~~g~~l~~~m~~lq~~a~~I~~~~~~SL 323 (593)
.-++|.++...|.. .+.++.-.-....-|+.+..-..+|+++..++-++-.++..-++ +...+..-+
T Consensus 398 l~a~r~q~eka~~~-~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle------------~~~~s~~~~ 464 (980)
T KOG0980|consen 398 LLASRTQLEKAQVL-VEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLE------------SAEQSIDDV 464 (980)
T ss_pred HHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHhHHHH
Q ss_pred HHHHHHhhchhhHHHhhHHH----HHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhchHH
Q 007691 324 DKQQQLLHGQSTALESLQLL----TKFQSEALAESRNTLQELAEYGHKQQEELLKRQEQLQEVHDHLFKNSRS 392 (593)
Q Consensus 324 enQ~~LL~gQ~~a~~~L~~l----~~~q~~aleesr~t~q~la~~~~~qqeell~~q~ql~~~h~~l~~~s~s 392 (593)
+++..=|+.|-..++.-.+. ++-|++++++-|..+..+..-..+.|..+-..-+.--.-..+|.++.++
T Consensus 465 ~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~ 537 (980)
T KOG0980|consen 465 EEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQ 537 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
No 102
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=34.59 E-value=8.9e+02 Score=29.16 Aligned_cols=70 Identities=17% Similarity=0.239 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhhhhhhhcchHHHHHHhhchhhHHHhhHHHHHHHHHH--HHHh
Q 007691 278 KEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQSTALESLQLLTKFQSEA--LAES 354 (593)
Q Consensus 278 ~~~ekl~~~t~~i~~ei~~~g~~l~~~m~~lq~~a~~I~~~~~~SLenQ~~LL~gQ~~a~~~L~~l~~~q~~a--lees 354 (593)
.-.|.+++.--+++.|++++...|-.+=+.++.--.++ ..|-++. -+.+..+...+..|.-.|.++ ||.+
T Consensus 538 e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~-----~~lr~~~--~e~~~~~e~L~~aL~amqdk~~~LE~s 609 (697)
T PF09726_consen 538 ECAESCRQRRRQLESELKKLRRELKQKEEQIRELESEL-----QELRKYE--KESEKDTEVLMSALSAMQDKNQHLENS 609 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH--hhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 45556777777788888887665553322222111111 1222221 224555555566777777775 6655
No 103
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=34.58 E-value=6.3e+02 Score=27.40 Aligned_cols=61 Identities=18% Similarity=0.276 Sum_probs=28.7
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 007691 235 EVVYNQSKEIAASQTELQEGQVRIK-EKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEIS 295 (593)
Q Consensus 235 ~~i~Eq~~eIa~sQ~eL~e~q~~m~-~~l~~g~a~~~esy~~l~~~~ekl~~~t~~i~~ei~ 295 (593)
+...+...+-+.+-.++.+--.+|. ..+.+.++...++...+.+.+++++++-.+++.+|.
T Consensus 44 EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~ 105 (301)
T PF06120_consen 44 EQARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIK 105 (301)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333332 234455555555555555666666555555555554
No 104
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=34.39 E-value=32 Score=33.64 Aligned_cols=47 Identities=26% Similarity=0.368 Sum_probs=22.9
Q ss_pred HHHHhhccccCcccccccCCCCccccC--CCCCCCCCCCcccccccccc
Q 007691 10 LILFLVLPGCQSWGWFSSGSSAEKTQQ--SDYPRDISNGFVAEFSMKGL 56 (593)
Q Consensus 10 li~~~~~~~~~s~~WFsS~~~~~~~~~--~~~p~~~~~g~~a~F~m~~~ 56 (593)
+|.++..+.|..+.||++++..+.... ..+|..+.-...++|.-...
T Consensus 25 ~ivl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Nl~ 73 (159)
T COG1580 25 LIVLLALAGAGYFFWFGSKSEDAEAESAQTPVEILAYYYLLEEFTTNLL 73 (159)
T ss_pred HHHHHHHHHHHHHHhhhcccccccccccCCCCCccceeeeccceeeecc
Confidence 333346777777889877533333221 12233333334555554443
No 105
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=34.22 E-value=2.1e+02 Score=28.60 Aligned_cols=27 Identities=19% Similarity=0.336 Sum_probs=17.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhhh
Q 007691 273 YSNLGKEVNNLRDEAIEIEKEISKAGD 299 (593)
Q Consensus 273 y~~l~~~~ekl~~~t~~i~~ei~~~g~ 299 (593)
.+.+...+-.|++.+..+++|+..+.+
T Consensus 139 le~~~~~~k~LrnKa~~L~~eL~~F~~ 165 (171)
T PF04799_consen 139 LEEIQSKSKTLRNKANWLESELERFQE 165 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666677777777777776444
No 106
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=33.50 E-value=1.1e+02 Score=24.51 Aligned_cols=31 Identities=23% Similarity=0.394 Sum_probs=26.4
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 007691 161 HGFQYETERLVNELKKSADYTEHKLEIIEEK 191 (593)
Q Consensus 161 q~fq~~TE~tVnkL~~sS~~a~~~Le~l~e~ 191 (593)
-.||..|...+..|...-..+..+|+.++.+
T Consensus 15 v~FQ~~v~~~lq~Lt~kL~~vs~RLe~LEn~ 45 (47)
T PF10393_consen 15 VAFQNKVTSALQSLTQKLDAVSKRLEALENR 45 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4699999999999998888888888887764
No 107
>COG5283 Phage-related tail protein [Function unknown]
Probab=33.44 E-value=1.2e+03 Score=30.13 Aligned_cols=188 Identities=18% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHhhhhHHHHHHHhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 007691 217 AQTAKGVRDLMDILSRHSEVVYNQSKEIAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISK 296 (593)
Q Consensus 217 aet~k~v~~~i~~l~~~s~~i~Eq~~eIa~sQ~eL~e~q~~m~~~l~~g~a~~~esy~~l~~~~ekl~~~t~~i~~ei~~ 296 (593)
+.....+.+.|.+.-+-=...-+|++.-.++-.+-.+- -+.|.++|......|+.+.+|+-++-.-+...++..+.
T Consensus 21 ~~~in~L~ssi~~~~~~~k~~e~q~k~t~~~ls~s~~k----~~~l~eameK~k~~~~~~kqe~~evn~at~a~~kay~e 96 (1213)
T COG5283 21 VKNINVLKSSIKDSTQFWKMLEKQQKLTKDGLSASKGK----YEGLSEAMEKQKKAYEDLKQEVKEVNRATQASKKAYQE 96 (1213)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhhhHHHHHHHhhhhhhhhcchHHHHHHhhchhhHHHhhH-------HHHHHHHHHHHHhHHHHHHHHHHhHHhH
Q 007691 297 AGDAMFSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQSTALESLQ-------LLTKFQSEALAESRNTLQELAEYGHKQQ 369 (593)
Q Consensus 297 ~g~~l~~~m~~lq~~a~~I~~~~~~SLenQ~~LL~gQ~~a~~~L~-------~l~~~q~~aleesr~t~q~la~~~~~qq 369 (593)
++.-...--+.++ +++--..++++++++|+.=+.-=..++..++ .+.+-....+.+.+..+-.+-+-..+|=
T Consensus 97 ~~~q~tqae~~~~-sas~q~~~a~~q~~~~~~~iq~~~~~is~t~k~maaQ~~l~eqt~n~~g~a~~~~~gl~esf~~q~ 175 (1213)
T COG5283 97 YNAQYTQAENKLR-SLSGQFGVASEQLMLQQKEIQRLQYAISTLNKSMAAQARLLEQTGNKFGTADAKVVGLRESFGRQT 175 (1213)
T ss_pred HHHHHHHHHHHHH-HHHhhhchhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhHHHHHHHhhhhHhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhHHHHHHHHH
Q 007691 370 EELLKRQEQLQEVHDHLFKNSRSILAAQEAFESKQASMFIALD 412 (593)
Q Consensus 370 eell~~q~ql~~~h~~l~~~s~sil~aqe~~~~~q~~vf~~Ld 412 (593)
+.+=.+-+..-.+-+.|. ...-++|+.+-..+..+.+-|.
T Consensus 176 ~aln~q~~~t~k~~~~~~---~~l~e~qq~~~q~~~a~~~~L~ 215 (1213)
T COG5283 176 EALNKQLERTKKVADALT---YVLDEAQQKLSQALSARLERLQ 215 (1213)
T ss_pred HHHHHHHHhhhhhhhhhh---hhhHHHHHHHHHHHHHHHHHHH
No 108
>PF14992 TMCO5: TMCO5 family
Probab=33.14 E-value=6.5e+02 Score=27.13 Aligned_cols=51 Identities=29% Similarity=0.358 Sum_probs=33.3
Q ss_pred HHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q 007691 350 ALAESRNTLQELAEYGHKQQEELLKRQEQLQEVHDHLFKNSRSILAAQEAF 400 (593)
Q Consensus 350 aleesr~t~q~la~~~~~qqeell~~q~ql~~~h~~l~~~s~sil~aqe~~ 400 (593)
.+++|.+.+|.+.+.-.+|=+++-.-.+..+.+|.-.-+-.+.|..=+|..
T Consensus 110 ~lq~sk~~lqql~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L 160 (280)
T PF14992_consen 110 SLQFSKNKLQQLLESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKL 160 (280)
T ss_pred ccHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888888888888777777777777777777664444444444444433
No 109
>PHA03247 large tegument protein UL36; Provisional
Probab=32.37 E-value=1.7e+03 Score=31.62 Aligned_cols=38 Identities=21% Similarity=0.256 Sum_probs=32.4
Q ss_pred HHHHHHHHHHH-HHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 007691 406 SMFIALDKLFA-LHNAMLLESRMIKAFFIYSLSIFIIYM 443 (593)
Q Consensus 406 ~vf~~Ld~l~~-lhn~iL~E~~~~ksf~fY~~~~~~iym 443 (593)
.+.+.||.|.. |=.|+.-+++.|+.++-+=+.+.-.|-
T Consensus 1832 ~lla~FD~~a~~LPkW~~~~~~~~r~Ll~lRl~LY~aYa 1870 (3151)
T PHA03247 1832 RLLAEFDALAGDLAPWAVDEFRGARALVQHRLGLYSAYA 1870 (3151)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888864 999999999999999988888888884
No 110
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=31.59 E-value=5.3e+02 Score=25.64 Aligned_cols=30 Identities=10% Similarity=0.168 Sum_probs=17.8
Q ss_pred HHHHHHhhhhhhhhhhHHHHHHHhhhhhhh
Q 007691 290 IEKEISKAGDAMFSSMEQLQRKADNIGSMA 319 (593)
Q Consensus 290 i~~ei~~~g~~l~~~m~~lq~~a~~I~~~~ 319 (593)
+..++..+...+-..|..+.+--..|....
T Consensus 87 ~~~~l~~i~~~V~~P~~~~~~~~~~i~k~I 116 (216)
T cd07599 87 LLEELEFFEERVILPAKELKKYIKKIRKTI 116 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666677777766555555433
No 111
>PF12097 DUF3573: Protein of unknown function (DUF3573); InterPro: IPR021956 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 372 to 530 amino acids in length.
Probab=31.47 E-value=86 Score=34.56 Aligned_cols=42 Identities=17% Similarity=0.041 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHhccchh--------hhhHHHHHHHHHHHhhhhhhh
Q 007691 492 LFVLLAAIQLLHSIFTYRDYE--------ILNYQMLQTVLEKINGMERDK 533 (593)
Q Consensus 492 ~f~~~~~v~ll~~i~~yrDye--------~lN~qlL~~l~~k~~~~~~~~ 533 (593)
++.+++++.+++.-++|.+.. .++.+.+..|++|+..||+..
T Consensus 9 ~~~ll~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~~Lq~QI~~Lq~ei 58 (383)
T PF12097_consen 9 LSFLLAISILAFFEDSPAVVNAAQTTQSNQNDQQEISELQKQIQQLQAEI 58 (383)
T ss_pred HHHHHHHHHHHhcccchhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555 889999999999999999877
No 112
>TIGR02131 phaP_Bmeg polyhydroxyalkanoic acid inclusion protein PhaP. This model describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage (see McCool,G.J. and Cannon,M.C, 1999).
Probab=31.45 E-value=5.1e+02 Score=25.43 Aligned_cols=21 Identities=19% Similarity=0.123 Sum_probs=11.2
Q ss_pred HHhhhhHHHHHHHHHHHHHhH
Q 007691 158 LQAHGFQYETERLVNELKKSA 178 (593)
Q Consensus 158 Lq~q~fq~~TE~tVnkL~~sS 178 (593)
-+-+.|+.++-.+.|.|.+-.
T Consensus 85 Dqi~EWq~k~~E~~~~lhqL~ 105 (165)
T TIGR02131 85 DQIEEWQDKTHEALAHLHELF 105 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666555554433
No 113
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=31.20 E-value=1.2e+03 Score=29.63 Aligned_cols=13 Identities=8% Similarity=0.089 Sum_probs=5.6
Q ss_pred cchhhhcCCCCCC
Q 007691 109 DCFQKDSGRPAFP 121 (593)
Q Consensus 109 NC~le~SGR~~fp 121 (593)
.+|.-.+|..+|+
T Consensus 169 ~~fSL~~s~~~~~ 181 (1201)
T PF12128_consen 169 ARFSLCESSHQYQ 181 (1201)
T ss_pred HhcCcCCCccccc
Confidence 3444444444354
No 114
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=31.10 E-value=5.9e+02 Score=26.05 Aligned_cols=114 Identities=13% Similarity=0.173 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHhHHHHhhhhhhhcchhhhHHHHHHHHHhhhhHHHHHHHhhhhh---HHHHhhhHHHHHHHHHHHHHHH
Q 007691 180 YTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHS---EVVYNQSKEIAASQTELQEGQV 256 (593)
Q Consensus 180 ~a~~~Le~l~e~qe~Ll~~~~~~~dsL~s~~~Q~~~laet~k~v~~~i~~l~~~s---~~i~Eq~~eIa~sQ~eL~e~q~ 256 (593)
.....++.+.-+...|.....+++.++..++.-..+|++---++..++.++.+-. +++-|........-..|.++
T Consensus 5 dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~-- 82 (193)
T PF14662_consen 5 DLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEE-- 82 (193)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3445567777777888888887777777777666666665555555555442211 11111111111111122111
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Q 007691 257 RIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKA 297 (593)
Q Consensus 257 ~m~~~l~~g~a~~~esy~~l~~~~ekl~~~t~~i~~ei~~~ 297 (593)
+++|-+....+.+..+.|..+++.|.++...+..+...+
T Consensus 83 --~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~l 121 (193)
T PF14662_consen 83 --NRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGL 121 (193)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhH
Confidence 223334444456666677777777777777777766663
No 115
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=31.05 E-value=3.4e+02 Score=23.29 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=9.2
Q ss_pred HHHHhHHHHHHHHHHHHHHhHHH
Q 007691 173 ELKKSADYTEHKLEIIEEKSDTL 195 (593)
Q Consensus 173 kL~~sS~~a~~~Le~l~e~qe~L 195 (593)
+|.....++.+.++.+.+.-+.+
T Consensus 23 ~l~~~l~~~~~ti~~l~~~~~~i 45 (90)
T PF06103_consen 23 KLKKTLDEVNKTIDTLQEQVDPI 45 (90)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHH
Confidence 33334444444444444433333
No 116
>PF03631 Virul_fac_BrkB: Virulence factor BrkB; InterPro: IPR017039 This entry represents the uncharacterised protein family UPF0761. It includes the E. coli gene product of yihY, and was previously thought to be a family of tRNA-processing ribonuclease BN proteins []. This has been shown to be incorrect [].; GO: 0004540 ribonuclease activity
Probab=30.95 E-value=4.7e+02 Score=26.33 Aligned_cols=86 Identities=21% Similarity=0.317 Sum_probs=42.4
Q ss_pred HHHHHHHHHHH--HHHHHHhhhhHHHHHHHHHHHHHHHHhcCccccccchhhHHHHHHHHHHHHHHHHh----cccchhh
Q 007691 407 MFIALDKLFAL--HNAMLLESRMIKAFFIYSLSIFIIYMLTSTKQTYTVRPRLYIGLCLTFLIEVVTFR----FTTYDIE 480 (593)
Q Consensus 407 vf~~Ld~l~~l--hn~iL~E~~~~ksf~fY~~~~~~iymlTStk~T~saR~~L~~lL~~~l~iEr~l~~----~~~~~~~ 480 (593)
+..++++++.. +.. -.+++...++++.++++.+ .+++.+.+..+.+..+.. ...-+.+
T Consensus 91 l~~a~~~i~~~~~~~~----r~~~~~~~~~~~~~i~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (260)
T PF03631_consen 91 LQRALNRIYGVPPRER----RSFWKRRLIALLFLIILGV------------LLILSLALSVFLPSVLQFIILPFLGLLSE 154 (260)
T ss_pred HHHHHHHHhccccccc----CCHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHhhhhccchhh
Confidence 44555666554 221 1244555555544444332 344555555555554432 2222223
Q ss_pred hhHH-HHhHHHHHHHHHHHHHHHHHHHhc
Q 007691 481 QQTW-IVSCDRSLFVLLAAIQLLHSIFTY 508 (593)
Q Consensus 481 ~~~w-~~~~~R~~f~~~~~v~ll~~i~~y 508 (593)
.+.| +.+.+|+++..+....++..+|.|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 183 (260)
T PF03631_consen 155 ISTWFLWNLIRWLVSFLLLFLLFFLLYRF 183 (260)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345 577888876666555555555543
No 117
>COG0840 Tar Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]
Probab=30.85 E-value=6.6e+02 Score=26.53 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=12.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhh
Q 007691 274 SNLGKEVNNLRDEAIEIEKEISKA 297 (593)
Q Consensus 274 ~~l~~~~ekl~~~t~~i~~ei~~~ 297 (593)
--+++++-+|.+++.+.-.+|..+
T Consensus 274 aVVAdEVR~LA~~s~~st~~I~~~ 297 (408)
T COG0840 274 AVVADEVRKLAERSADSAKEIGLL 297 (408)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666666555555555543
No 118
>PF03342 Rhabdo_M1: Rhabdovirus M1 matrix protein (M1 polymerase-associated protein); InterPro: IPR005010 This is a family of phosphoproteins of unknown function expressed by Rhadovirus.
Probab=30.54 E-value=2.8e+02 Score=28.42 Aligned_cols=58 Identities=19% Similarity=0.198 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhHHHHHHHHHHHH
Q 007691 355 RNTLQELAEYGHKQQEELLKRQEQLQEVHDHLFKNSRSILAAQEAFESKQASMFIALDKLF 415 (593)
Q Consensus 355 r~t~q~la~~~~~qqeell~~q~ql~~~h~~l~~~s~sil~aqe~~~~~q~~vf~~Ld~l~ 415 (593)
++-=|.+.+.-+++|+||-++=|.....|- -|.+++++.|.+...+=..|+.+|--+.
T Consensus 76 k~fgqlir~ik~sHQeelT~HLEkv~~EnR---Anl~al~eSQ~E~~K~tk~ILs~lIs~R 133 (219)
T PF03342_consen 76 KAFGQLIRQIKMSHQEELTQHLEKVATENR---ANLQALTESQQEHEKVTKEILSALISIR 133 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhH---HhHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 333456777888999999998888888877 6888999999999988888887765443
No 119
>COG4842 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.36 E-value=3.5e+02 Score=23.97 Aligned_cols=33 Identities=9% Similarity=0.224 Sum_probs=19.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhh
Q 007691 267 ATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGD 299 (593)
Q Consensus 267 a~~~esy~~l~~~~ekl~~~t~~i~~ei~~~g~ 299 (593)
..+...|....+.++++.+--..|-++|+..++
T Consensus 50 ~~f~~~~~~w~~~~~~l~~~l~~i~~~l~~~a~ 82 (97)
T COG4842 50 EAFQSEQQQWNQAATELNEALEQLADALRHAAD 82 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666655555555555444
No 120
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=30.07 E-value=6.7e+02 Score=26.35 Aligned_cols=40 Identities=20% Similarity=0.363 Sum_probs=24.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Q 007691 267 ATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQR 310 (593)
Q Consensus 267 a~~~esy~~l~~~~ekl~~~t~~i~~ei~~~g~~l~~~m~~lq~ 310 (593)
.++.+.+..+..+++.++++-..++.+|.. +..++...+.
T Consensus 41 e~~~~~~~~~~~e~e~le~qv~~~e~ei~~----~r~r~~~~e~ 80 (239)
T COG1579 41 EALNKALEALEIELEDLENQVSQLESEIQE----IRERIKRAEE 80 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 344555666667777777777777777766 3334444443
No 121
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=29.72 E-value=4.7e+02 Score=27.51 Aligned_cols=42 Identities=10% Similarity=0.431 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHhcCccccccchhhHHHHHHHHHHHHHHH
Q 007691 428 IKAFFIYSLSIFIIYMLTSTKQTYTVRPRLYIGLCLTFLIEVVT 471 (593)
Q Consensus 428 ~ksf~fY~~~~~~iymlTStk~T~saR~~L~~lL~~~l~iEr~l 471 (593)
....+.|.+.++++..+....|-++.| .|..+-+.++++..+
T Consensus 45 ~~~~~~~~~~~l~~~~igaaRR~~DTR--vf~rIy~~la~~vi~ 86 (237)
T PF13748_consen 45 VWQALMYAALVLLMWAIGAARRIYDTR--VFSRIYAELAVPVIL 86 (237)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhH--HHHHHHHHHhHHHHH
Confidence 456689999999999999999999996 445554555555333
No 122
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=29.67 E-value=8.2e+02 Score=27.23 Aligned_cols=16 Identities=19% Similarity=0.233 Sum_probs=7.7
Q ss_pred HHHHHHhHHHHHHHHH
Q 007691 171 VNELKKSADYTEHKLE 186 (593)
Q Consensus 171 VnkL~~sS~~a~~~Le 186 (593)
+++|..++..+.+.++
T Consensus 248 v~~l~~~~~~~a~~~~ 263 (370)
T PLN03094 248 VAKMYALAERAADLME 263 (370)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 5555554444444443
No 123
>TIGR02736 cbb3_Q_epsi cytochrome c oxidase, cbb3-type, CcoQ subunit, epsilon-Proteobacterial. Members of this protein family are restricted to the epsilon branch of the Proteobacteria. All members are found in operons containing the other three structural subunits of the cbb3 type of cytochrome c oxidase. These small proteins show remote sequence similarity to the CcoQ subunit in other cytochrome c oxidase systems, so this family is assumed to represent the epsilonproteobacterial variant of CcoQ.
Probab=29.60 E-value=55 Score=27.17 Aligned_cols=29 Identities=24% Similarity=0.222 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHhc---------cchhhhhHHHH
Q 007691 491 SLFVLLAAIQLLHSIFTY---------RDYEILNYQML 519 (593)
Q Consensus 491 ~~f~~~~~v~ll~~i~~y---------rDye~lN~qlL 519 (593)
.+|+++.+|++|++.++. ||||+-..-.|
T Consensus 4 yf~~ti~lvv~LYgY~yhLYrsek~G~rdYEKY~~LAL 41 (56)
T TIGR02736 4 YFAFTLLLVIFLYAYIYHLYRSQKKGERDYEKYANLAL 41 (56)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhcccccCHHHHhhhhc
Confidence 357788888888887764 78876554443
No 124
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=29.48 E-value=1.6e+03 Score=30.54 Aligned_cols=20 Identities=10% Similarity=0.270 Sum_probs=9.9
Q ss_pred HHHHHHHhhhhHHHHHHHhh
Q 007691 212 RVQNVAQTAKGVRDLMDILS 231 (593)
Q Consensus 212 Q~~~laet~k~v~~~i~~l~ 231 (593)
....++++.++++.-.+.+.
T Consensus 1316 ~k~~l~~~l~~l~~e~~~l~ 1335 (1930)
T KOG0161|consen 1316 EKSALENALRQLEHELDLLR 1335 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555554443
No 125
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=29.27 E-value=89 Score=34.10 Aligned_cols=49 Identities=12% Similarity=0.293 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHhhhhhhhcchhhhHHHHHHHHHhhhhHHHHHHH
Q 007691 181 TEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDI 229 (593)
Q Consensus 181 a~~~Le~l~e~qe~Ll~~~~~~~dsL~s~~~Q~~~laet~k~v~~~i~~ 229 (593)
..++|-.++.....|.++++.+...++.+..+-++++-+..++...|+.
T Consensus 33 I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~s 81 (326)
T PF04582_consen 33 IRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNS 81 (326)
T ss_dssp -------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666677777777777777777777766766666666666653
No 126
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=28.70 E-value=6.5e+02 Score=25.73 Aligned_cols=45 Identities=13% Similarity=0.249 Sum_probs=19.2
Q ss_pred HHHHHHHHhHHHHhhhhhhhcchhhhHHHHHHHHHhhhhHHHHHH
Q 007691 184 KLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMD 228 (593)
Q Consensus 184 ~Le~l~e~qe~Ll~~~~~~~dsL~s~~~Q~~~laet~k~v~~~i~ 228 (593)
.++.+.+...+..+...+.+...+.+..+.+.+..--+.+..+++
T Consensus 22 ~~~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e 66 (251)
T PF11932_consen 22 TLDQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIE 66 (251)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444333333333344444444444444444444443
No 127
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=28.59 E-value=7.8e+02 Score=26.61 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=12.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHH
Q 007691 235 EVVYNQSKEIAASQTELQEGQVRI 258 (593)
Q Consensus 235 ~~i~Eq~~eIa~sQ~eL~e~q~~m 258 (593)
+.|.+...+|...+.++.+.+.++
T Consensus 211 ~~l~~~~~ei~~~~~~l~e~~~~l 234 (312)
T smart00787 211 EKLKKLLQEIMIKVKKLEELEEEL 234 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555544
No 128
>PLN03223 Polycystin cation channel protein; Provisional
Probab=28.54 E-value=5.5e+02 Score=33.50 Aligned_cols=38 Identities=18% Similarity=0.165 Sum_probs=26.7
Q ss_pred HHHHHHHHhhhhHHHHHHHhhhhhHHHHhhhHHHHHHH
Q 007691 211 HRVQNVAQTAKGVRDLMDILSRHSEVVYNQSKEIAASQ 248 (593)
Q Consensus 211 ~Q~~~laet~k~v~~~i~~l~~~s~~i~Eq~~eIa~sQ 248 (593)
.||.+-+.+..+|.+++..|...+.+|-.++..+.++|
T Consensus 771 l~~~~~~~~l~~~~~~v~~~~t~q~~~~~~~~~~~~~~ 808 (1634)
T PLN03223 771 LQQTNAAATLTNILTQVGTLSTTQTSLDTQIETLKTQQ 808 (1634)
T ss_pred hhhcchHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Confidence 45556677778888888888877777766666655543
No 129
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=27.89 E-value=7.2e+02 Score=25.99 Aligned_cols=65 Identities=18% Similarity=0.203 Sum_probs=32.2
Q ss_pred HHHHHhHHHHhhhhhhhcchhhhHHHHHHHHHhhhhHHHHHHHhhhhhHHHHhhhHHHHHHHHHH
Q 007691 187 IIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYNQSKEIAASQTEL 251 (593)
Q Consensus 187 ~l~e~qe~Ll~~~~~~~dsL~s~~~Q~~~laet~k~v~~~i~~l~~~s~~i~Eq~~eIa~sQ~eL 251 (593)
.+.+-..+|.....++.+.|..+..=..-+++++.++...++++..-+..|-++..++.+.-..+
T Consensus 39 ~l~~~l~~ln~~~~~l~~~l~~l~~v~~~~a~aapdL~~~l~~~~~~s~tL~~~~~~L~~lL~~~ 103 (267)
T PF11887_consen 39 DLNTLLATLNPRLPQLREDLRNLADVADTYADAAPDLLDALDNLTTTSRTLVDQRQQLDALLLSA 103 (267)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33333333333344444444444444455566666666666666665555555555544443333
No 130
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=27.85 E-value=4.8e+02 Score=23.95 Aligned_cols=37 Identities=8% Similarity=0.227 Sum_probs=21.5
Q ss_pred hhhhhhhhhHHHHHHHhhhhhhhhcchHHHHHHhhch
Q 007691 297 AGDAMFSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQ 333 (593)
Q Consensus 297 ~g~~l~~~m~~lq~~a~~I~~~~~~SLenQ~~LL~gQ 333 (593)
+...+..-|+.+|..-.+........++.|..+..+.
T Consensus 93 L~~~f~~~m~~fq~~Q~~~~~~~k~~i~Rq~~i~~~~ 129 (151)
T cd00179 93 LSKKFVEVMTEFNKAQRKYRERYKERIQRQLEITGGE 129 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3334445566666666666666666666666665543
No 131
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=27.63 E-value=5e+02 Score=24.12 Aligned_cols=14 Identities=43% Similarity=0.667 Sum_probs=9.6
Q ss_pred hHHHHHHhhchhhH
Q 007691 323 LDKQQQLLHGQSTA 336 (593)
Q Consensus 323 LenQ~~LL~gQ~~a 336 (593)
|..|..||..|-.+
T Consensus 117 L~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 117 LNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHhh
Confidence 56788888766443
No 132
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=27.61 E-value=7.8e+02 Score=26.33 Aligned_cols=71 Identities=23% Similarity=0.397 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhhhhhhhcchHHHHHHh
Q 007691 256 VRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIGSMAGDSLDKQQQLL 330 (593)
Q Consensus 256 ~~m~~~l~~g~a~~~esy~~l~~~~ekl~~~t~~i~~ei~~~g~~l~~~m~~lq~~a~~I~~~~~~SLenQ~~LL 330 (593)
..+++.+.+..+.+.+-+..|.+..+.+.. +-.++...-..|...+..|+...++|+..-..-|+.-++-|
T Consensus 148 ~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~----~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL 218 (325)
T PF08317_consen 148 EGLKEGLEENLELLQEDYAKLDKQLEQLDE----LLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQEL 218 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHH
Confidence 345555556666666666555555554443 22223333333445555666666666654444444333333
No 133
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=27.59 E-value=5.4e+02 Score=24.44 Aligned_cols=36 Identities=22% Similarity=0.276 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHhhhhh
Q 007691 166 ETERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQ 201 (593)
Q Consensus 166 ~TE~tVnkL~~sS~~a~~~Le~l~e~qe~Ll~~~~~ 201 (593)
+++.-+.-+.+-+....++-..=.+....|..-++.
T Consensus 8 ~~~~g~~~~~e~~~f~keRa~iE~eYak~L~kLak~ 43 (191)
T cd07610 8 RTELGLDLLKDLREFLKKRAAIEEEYAKNLQKLAKK 43 (191)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444555555444433
No 134
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=27.59 E-value=2.7e+02 Score=32.06 Aligned_cols=113 Identities=12% Similarity=0.291 Sum_probs=72.3
Q ss_pred HHhHHHHHHHHHHHHHHhHHHHhhhhhhhcchhhhHHHHHHHHHhhhhHHH---HHHHhhhhhHHHHhhhHHHHHHHHHH
Q 007691 175 KKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRD---LMDILSRHSEVVYNQSKEIAASQTEL 251 (593)
Q Consensus 175 ~~sS~~a~~~Le~l~e~qe~Ll~~~~~~~dsL~s~~~Q~~~laet~k~v~~---~i~~l~~~s~~i~Eq~~eIa~sQ~eL 251 (593)
-+.+..-.+.|+.-++.|.+|++.. +.|.+.|..++=.-.. =-.+|+..++.|.+..++=..-+.++
T Consensus 130 ~s~~~~~~~~lekq~e~qkeLi~QL----------k~Ql~dLE~~AYe~Geg~LPq~viLekQk~ilDeLr~Kl~lnl~i 199 (621)
T KOG3759|consen 130 RSESESGNDVLEKQNERQKELIKQL----------KEQLEDLERTAYENGEGELPQTVILEKQKAILDELREKLELNLDI 199 (621)
T ss_pred cccccccchhhhhhcchHHHHHHHH----------HHHHHHHHHHHHhcCCCcCchHHHHHHHHHHHHHHHHHhhccCCc
Confidence 3445555666777777777777643 2344444333211111 00256667777777766633333333
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Q 007691 252 -QEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKA 297 (593)
Q Consensus 252 -~e~q~~m~~~l~~g~a~~~esy~~l~~~~ekl~~~t~~i~~ei~~~ 297 (593)
+..+.++++.+|++++.++.-++-=++=+++|+-.-.|+++=|-=+
T Consensus 200 ~~lsteelr~qVD~A~~q~VnP~k~KeQLV~QLkTQItDLErFInFl 246 (621)
T KOG3759|consen 200 DKLSTEELRRQVDDALKQLVNPFKEKEQLVDQLKTQITDLERFINFL 246 (621)
T ss_pred ccccHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778999999999999999888888999999888888877553
No 135
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.07 E-value=1.3e+03 Score=28.70 Aligned_cols=64 Identities=19% Similarity=0.143 Sum_probs=28.4
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhHHH--------HHHHHHHHHHHHHHHHHhhhhHHHH
Q 007691 367 KQQEELLKRQEQLQEVHDHLFKNSRSILAAQEAFESKQAS--------MFIALDKLFALHNAMLLESRMIKAF 431 (593)
Q Consensus 367 ~qqeell~~q~ql~~~h~~l~~~s~sil~aqe~~~~~q~~--------vf~~Ld~l~~lhn~iL~E~~~~ksf 431 (593)
.+|.++-+.+++++..+...-. ...-+++++.-...++. +-+...|+.-.-|-|-.+.--++++
T Consensus 810 ~~q~e~~~~keq~~t~~~~tsa-~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl 881 (970)
T KOG0946|consen 810 ELQSELTQLKEQIQTLLERTSA-AADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSL 881 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-hhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhH
Confidence 4555666666666655553322 22334444444333332 2233344444445554444333333
No 136
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.57 E-value=2.3e+02 Score=31.29 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=12.7
Q ss_pred CcchHHHHHHHHh-hccccCcc
Q 007691 2 GRPHILFMLILFL-VLPGCQSW 22 (593)
Q Consensus 2 ~~~~~l~~li~~~-~~~~~~s~ 22 (593)
++++++.++-.|- +.+....|
T Consensus 21 ~~~~~l~lls~~~sL~P~t~tf 42 (365)
T KOG2391|consen 21 TRQDLLNLLSSFKSLRPKTDTF 42 (365)
T ss_pred HHHHHHHHHHhccccCcccceE
Confidence 3567777555553 66666665
No 137
>PF13166 AAA_13: AAA domain
Probab=26.54 E-value=1.1e+03 Score=27.54 Aligned_cols=35 Identities=11% Similarity=0.278 Sum_probs=22.6
Q ss_pred hcCCCCCCCCCCcccHhHhhhc-CChHHHHHHHHHHHhH
Q 007691 114 DSGRPAFPNCDQKSAMINCLKK-IDDEEHKIYLAFLLET 151 (593)
Q Consensus 114 ~SGR~~fp~C~~~~si~~Ct~~-Mdd~af~vY~eF~~ht 151 (593)
..|.+ |+. +...=.=|.++ +++..+..|..||...
T Consensus 246 ~~G~~-~~~--~~~~CpfC~q~~l~~~~~~~l~~~f~~~ 281 (712)
T PF13166_consen 246 EQGLE-LHK--EGDTCPFCQQEPLSEERKERLEKYFDEE 281 (712)
T ss_pred HcCcc-CCC--CCCcCCCCCCcCCcHHHHHHHHHHHHHH
Confidence 46666 431 22334457785 8889999998888763
No 138
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=26.48 E-value=1.5e+03 Score=29.26 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=11.7
Q ss_pred CCCchHHHHHHHHhccchhhhhcHHHHHHHHH
Q 007691 74 GSNACWQNAYRHLFAGCSEIIAIEEKRSRFAW 105 (593)
Q Consensus 74 ~~~~CW~~Al~~L~~~C~~L~~~de~qSrLAl 105 (593)
....|+..|+.+-- =|.++ ++-.|+|.
T Consensus 706 ~~r~aFYfaLrdtL-V~d~L----eQAtRiay 732 (1293)
T KOG0996|consen 706 KFRPAFYFALRDTL-VADNL----EQATRIAY 732 (1293)
T ss_pred HHHHHHHHHHhhhh-hhcCH----HHHHHHhh
Confidence 33445555543321 25544 23445553
No 139
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=26.46 E-value=6.6e+02 Score=25.12 Aligned_cols=55 Identities=13% Similarity=0.294 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhhhhhh
Q 007691 263 DEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIGSMA 319 (593)
Q Consensus 263 ~~g~a~~~esy~~l~~~~ekl~~~t~~i~~ei~~~g~~l~~~m~~lq~~a~~I~~~~ 319 (593)
..+.+.|....+++..+.+.+-.+.++.-+. ..|+.+...++.+++...+|+.+.
T Consensus 47 tk~veeLe~~~~q~~~~~s~~~~~~vk~L~k--~~~~~l~d~inE~t~k~~El~~~i 101 (165)
T PF09602_consen 47 TKQVEELEKELKQFKREFSDLYEEYVKQLRK--ATGNSLNDSINEWTDKLNELSAKI 101 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555444444433332 456667777788888888887655
No 140
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=26.22 E-value=7.1e+02 Score=28.70 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 007691 276 LGKEVNNLRDEAIEIEKEISK 296 (593)
Q Consensus 276 l~~~~ekl~~~t~~i~~ei~~ 296 (593)
+.-.++.|.+.|.+++.+|.+
T Consensus 472 l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 472 LEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 334455666677766666665
No 141
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=25.93 E-value=1.1e+03 Score=27.68 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 007691 253 EGQVRIKEKLDEGMATLIDAYSNLGKEVNN 282 (593)
Q Consensus 253 e~q~~m~~~l~~g~a~~~esy~~l~~~~ek 282 (593)
+.+..+...+.+-++++.++|.--..++..
T Consensus 319 ~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~ 348 (570)
T COG4477 319 EKAKENNEHLKEEIERVKESYRLAETELGS 348 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccChhHHHH
Confidence 445667778888899999988765554443
No 142
>smart00511 ORANGE Orange domain. This domain confers specificity among members of the Hairy/E(SPL) family.
Probab=25.86 E-value=43 Score=25.55 Aligned_cols=37 Identities=22% Similarity=0.297 Sum_probs=31.5
Q ss_pred CCCchHHHHHHHHhccchhhhhcHHHHHHHHHHhhcchhh
Q 007691 74 GSNACWQNAYRHLFAGCSEIIAIEEKRSRFAWHLSDCFQK 113 (593)
Q Consensus 74 ~~~~CW~~Al~~L~~~C~~L~~~de~qSrLAl~LtNC~le 113 (593)
++..|..++..-|. +|..+ +++.+.||=-||.+|..+
T Consensus 6 Gy~~C~~Ev~~fLs-~~~~~--~~~~~~~Ll~HL~~~~~~ 42 (45)
T smart00511 6 GYRECANEVSRFLS-QLPGT--DPDVRARLLSHLQTHLNQ 42 (45)
T ss_pred HHHHHHHHHHHHHh-cCCCC--ChHHHHHHHHHHHHHHHh
Confidence 68899999988876 67778 888999999999888654
No 143
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=25.14 E-value=9.2e+02 Score=26.32 Aligned_cols=31 Identities=19% Similarity=0.293 Sum_probs=22.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 007691 266 MATLIDAYSNLGKEVNNLRDEAIEIEKEISK 296 (593)
Q Consensus 266 ~a~~~esy~~l~~~~ekl~~~t~~i~~ei~~ 296 (593)
+..+.+.+..|-.+..+|+.++...+.+=..
T Consensus 169 lk~LEeEN~~LR~Ea~~L~~et~~~EekEqq 199 (306)
T PF04849_consen 169 LKSLEEENEQLRSEASQLKTETDTYEEKEQQ 199 (306)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHhhccHHHHH
Confidence 3467788888888888888877766665333
No 144
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=24.99 E-value=1.5e+03 Score=28.75 Aligned_cols=68 Identities=13% Similarity=0.180 Sum_probs=45.5
Q ss_pred HHHHHhhHHHHHHHHHHHH----HHHHHHHhhhhhhhhhhHHHHHHHhhhhhhhhcchHHHHHHhhchhhHH
Q 007691 270 IDAYSNLGKEVNNLRDEAI----EIEKEISKAGDAMFSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQSTAL 337 (593)
Q Consensus 270 ~esy~~l~~~~ekl~~~t~----~i~~ei~~~g~~l~~~m~~lq~~a~~I~~~~~~SLenQ~~LL~gQ~~a~ 337 (593)
...|+.+-+.++++++... .+...+....+.+...-++.+..-.++.........++++++++..+.+
T Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~e~~~~~~q~~~e~~~~~~~~~ 792 (1041)
T KOG0243|consen 721 STFFQTLDNQAEKLTNLFSEANISLSQKLSSFQKKFESIAEDEKQLVEDIKELLSSHDQRNNELLDIALQTL 792 (1041)
T ss_pred HHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666677777666333 3455666666666665556666677788888888888888888766554
No 145
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=24.74 E-value=1.6e+03 Score=29.06 Aligned_cols=17 Identities=18% Similarity=0.114 Sum_probs=13.7
Q ss_pred cchhhhhHHHHHHHHHH
Q 007691 509 RDYEILNYQMLQTVLEK 525 (593)
Q Consensus 509 rDye~lN~qlL~~l~~k 525 (593)
||+|+-|-+++.++.+=
T Consensus 789 ~~~Ekq~~~~~~~l~~~ 805 (1317)
T KOG0612|consen 789 KMLEKQLKKLLDELAEL 805 (1317)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88998888888887743
No 146
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=24.36 E-value=1.4e+03 Score=28.07 Aligned_cols=76 Identities=22% Similarity=0.218 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHh---------hhchHHHHHHHHHHHHhHHHHHH
Q 007691 339 SLQLLTKFQSEALAESRNTLQELAEYGHKQQEELLKRQEQLQEVHDHL---------FKNSRSILAAQEAFESKQASMFI 409 (593)
Q Consensus 339 ~L~~l~~~q~~aleesr~t~q~la~~~~~qqeell~~q~ql~~~h~~l---------~~~s~sil~aqe~~~~~q~~vf~ 409 (593)
.|+.-.+-+..=|+..|.++.++..--.++|.+|-.+++.|....+.| ....+.++.....-++.+..+-.
T Consensus 118 rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~~~~~~~e~~~~~le~ 197 (775)
T PF10174_consen 118 RLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEALRRIREAEARIMRLES 197 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 344455555555788888998888888899999999999999999977 33334566666666665555444
Q ss_pred HHHHH
Q 007691 410 ALDKL 414 (593)
Q Consensus 410 ~Ld~l 414 (593)
.|.+-
T Consensus 198 lle~~ 202 (775)
T PF10174_consen 198 LLERK 202 (775)
T ss_pred HHHHH
Confidence 44333
No 147
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=24.15 E-value=1.1e+03 Score=29.01 Aligned_cols=110 Identities=15% Similarity=0.211 Sum_probs=0.0
Q ss_pred hhhhhcchhhhHHHHHHHHHhhhhHHHHHHHhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q 007691 199 SNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYNQSKEIAASQTELQEGQVRIKEKLDEGMATL--------- 269 (593)
Q Consensus 199 ~~~~~dsL~s~~~Q~~~laet~k~v~~~i~~l~~~s~~i~Eq~~eIa~sQ~eL~e~q~~m~~~l~~g~a~~--------- 269 (593)
++++++++.+.+.-+.+-.+-.|-++.+-++=.+=.+.+.|.=+++..+-.+-..+..+++-.++++++.+
T Consensus 440 q~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~ 519 (861)
T PF15254_consen 440 QNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEA 519 (861)
T ss_pred HHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q ss_pred -HHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q 007691 270 -IDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQL 308 (593)
Q Consensus 270 -~esy~~l~~~~ekl~~~t~~i~~ei~~~g~~l~~~m~~l 308 (593)
...+.-|+.++...--|-..|..=.+.++.+|+.-+-+|
T Consensus 520 sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~lL~dl 559 (861)
T PF15254_consen 520 SEKENQILGITLRQRDAEIERLRELTRTLQNSMAKLLSDL 559 (861)
T ss_pred HHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
No 148
>PRK04654 sec-independent translocase; Provisional
Probab=23.79 E-value=3.8e+02 Score=27.80 Aligned_cols=18 Identities=6% Similarity=-0.034 Sum_probs=8.6
Q ss_pred HHHHHhhhhHHHHHHHhh
Q 007691 214 QNVAQTAKGVRDLMDILS 231 (593)
Q Consensus 214 ~~laet~k~v~~~i~~l~ 231 (593)
++|=+..+.+..-|..+.
T Consensus 23 erLPe~aRtlGk~irk~R 40 (214)
T PRK04654 23 ERLPKAARFAGLWVRRAR 40 (214)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 444555555555444433
No 149
>PF08824 Serine_rich: Serine rich protein interaction domain; InterPro: IPR014928 This is a serine rich protein that is found in the docking protein p130(cas) (Crk-associated substrate). The protein folds into a four helix bundle which is associated with protein-protein interactions []. ; PDB: 2L81_A 1Z23_A.
Probab=23.76 E-value=87 Score=30.83 Aligned_cols=30 Identities=23% Similarity=0.318 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 007691 256 VRIKEKLDEGMATLIDAYSNLGKEVNNLRD 285 (593)
Q Consensus 256 ~~m~~~l~~g~a~~~esy~~l~~~~ekl~~ 285 (593)
..++.+|...+..++++|+-+.+..+.|-.
T Consensus 76 ~~L~~kL~~qLq~l~ds~qiL~~~~q~Ld~ 105 (159)
T PF08824_consen 76 RNLQAKLRRQLQPLEDSYQILLQTSQALDS 105 (159)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 566777888888999999999887776644
No 150
>PF01608 I_LWEQ: I/LWEQ domain; InterPro: IPR002558 I/LWEQ domains bind to actin. It has been shown that the I/LWEQ domains from mouse talin P26039 from SWISSPROT and yeast Sla2p P33338 from SWISSPROT interact with F-actin []. The domain has four conserved blocks, the name of the domain is derived from the initial conserved amino acid of each of the four blocks []. I/LWEQ domains can be placed into four major groups based on sequence similarity: Metazoan talin. Dictyostelium discoideum (Slime mould) TalA/TalB P54633 from SWISSPROT and SLA110. Metazoan Hip1p O00291 from SWISSPROT. Saccharomyces cerevisiae Sla2p P33338 from SWISSPROT. ; GO: 0003779 actin binding; PDB: 2QDQ_A 2JSW_A 1R0D_B.
Probab=23.68 E-value=7.1e+02 Score=24.47 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=18.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHhhh
Q 007691 366 HKQQEELLKRQEQLQEVHDHLFK 388 (593)
Q Consensus 366 ~~qqeell~~q~ql~~~h~~l~~ 388 (593)
+.+|.++|+...+|..++.+|.+
T Consensus 121 Me~Qv~iL~lE~eLe~ar~kL~~ 143 (152)
T PF01608_consen 121 MEAQVRILKLEKELEKARKKLAE 143 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788889999999888887755
No 151
>PF14735 HAUS4: HAUS augmin-like complex subunit 4
Probab=23.44 E-value=8.6e+02 Score=25.40 Aligned_cols=31 Identities=23% Similarity=0.459 Sum_probs=25.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 007691 271 DAYSNLGKEVNNLRDEAIEIEKEISKAGDAMF 302 (593)
Q Consensus 271 esy~~l~~~~ekl~~~t~~i~~ei~~~g~~l~ 302 (593)
++|+.+|.+.+.+..+-.++..+|.... |+.
T Consensus 202 ~~Ye~lg~~F~~ivreY~~l~~~ie~k~-Wal 232 (238)
T PF14735_consen 202 ESYEGLGPEFEEIVREYTDLQQEIENKR-WAL 232 (238)
T ss_pred HHHhcccHhHHHHHHHHHHHHHHHHHHH-HHH
Confidence 5899999999999999999999888855 443
No 152
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=23.22 E-value=8.7e+02 Score=25.34 Aligned_cols=13 Identities=31% Similarity=0.115 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHH
Q 007691 409 IALDKLFALHNAM 421 (593)
Q Consensus 409 ~~Ld~l~~lhn~i 421 (593)
..|+|+.+|+...
T Consensus 243 G~l~R~~Al~~L~ 255 (301)
T PF14362_consen 243 GFLARLEALWELT 255 (301)
T ss_pred CHHHHHHHHHHHH
Confidence 5677887777764
No 153
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=22.45 E-value=1.6e+03 Score=28.12 Aligned_cols=99 Identities=19% Similarity=0.220 Sum_probs=65.9
Q ss_pred HhhhhHHHHHHHhhhhhHHHHhhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 007691 218 QTAKGVRDLMDILSRHSEVVYNQSKE-----IAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEK 292 (593)
Q Consensus 218 et~k~v~~~i~~l~~~s~~i~Eq~~e-----Ia~sQ~eL~e~q~~m~~~l~~g~a~~~esy~~l~~~~ekl~~~t~~i~~ 292 (593)
|.+|+|-.+..-+.+.-..++|-... |---|.-+.+-- .-+.++.+.++..++-.+.-..++|++..+..+++.
T Consensus 77 e~sk~vstqetriyRrdv~llEddlk~~~sQiriLQn~c~~lE-~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~ 155 (1265)
T KOG0976|consen 77 EQSKKVSTQETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLE-MEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLED 155 (1265)
T ss_pred hhcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44666666666555554444442211 222222221110 113567788888888888888999999999999999
Q ss_pred HHHhhhhhhhhhhHHHHHHHhhhhh
Q 007691 293 EISKAGDAMFSSMEQLQRKADNIGS 317 (593)
Q Consensus 293 ei~~~g~~l~~~m~~lq~~a~~I~~ 317 (593)
++.+-.+.+..+..+|..+...|.+
T Consensus 156 eLsAk~~eIf~~~~~L~nk~~~lt~ 180 (1265)
T KOG0976|consen 156 ELSAKAHDIFMIGEDLHDKNEELNE 180 (1265)
T ss_pred HHhhhhHHHHHHHHHHhhhhhHHhH
Confidence 9999888888888888888887775
No 154
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=22.28 E-value=1.1e+03 Score=26.41 Aligned_cols=20 Identities=25% Similarity=0.165 Sum_probs=13.4
Q ss_pred hcCccccccchhhHHHHHHH
Q 007691 444 LTSTKQTYTVRPRLYIGLCL 463 (593)
Q Consensus 444 lTStk~T~saR~~L~~lL~~ 463 (593)
||=+-+...+|..|.--|+.
T Consensus 223 l~d~~~~~~~k~~l~~~l~~ 242 (445)
T PRK13428 223 LTEPAEDAAPKIRLVERLFS 242 (445)
T ss_pred cCCCCCChhhHHHHHHHHhC
Confidence 56677777777776666553
No 155
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=21.97 E-value=7.3e+02 Score=24.00 Aligned_cols=50 Identities=12% Similarity=0.280 Sum_probs=24.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhHHHHhhhhhhhcchhhhHHHHHHHHHh
Q 007691 170 LVNELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQT 219 (593)
Q Consensus 170 tVnkL~~sS~~a~~~Le~l~e~qe~Ll~~~~~~~dsL~s~~~Q~~~laet 219 (593)
..+.+......+.+.|+.+.+.-..+.+.++.+|+.=+.+...+.+|.+.
T Consensus 15 ~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ 64 (157)
T PF04136_consen 15 ECDQLLDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEEL 64 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555554444333333333333333
No 156
>PRK10780 periplasmic chaperone; Provisional
Probab=21.65 E-value=7.2e+02 Score=23.84 Aligned_cols=11 Identities=36% Similarity=0.709 Sum_probs=4.2
Q ss_pred hHHHHHHHhhh
Q 007691 305 MEQLQRKADNI 315 (593)
Q Consensus 305 m~~lq~~a~~I 315 (593)
++.||..+..+
T Consensus 70 ~~~~q~~~~~m 80 (165)
T PRK10780 70 MQKLQRDGSTM 80 (165)
T ss_pred HHHHHhccccc
Confidence 33444333333
No 157
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=21.52 E-value=4.1e+02 Score=31.16 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 007691 260 EKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISK 296 (593)
Q Consensus 260 ~~l~~g~a~~~esy~~l~~~~ekl~~~t~~i~~ei~~ 296 (593)
+.|++..+-++..|+++.-+.|||.+|-.++++.--.
T Consensus 26 dRIKdEfqflqaqyhslkleceKlA~EKteMqRhYvm 62 (705)
T KOG0639|consen 26 DRIKEEFQFLQAQYHSLKLECEKLASEKTEMQRHYVM 62 (705)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhheee
Confidence 3456666777889999999999999999888885443
No 158
>PF15050 SCIMP: SCIMP protein
Probab=21.47 E-value=1.4e+02 Score=28.55 Aligned_cols=52 Identities=12% Similarity=0.176 Sum_probs=36.0
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHhhhhhhh
Q 007691 482 QTWIVSCDRSLFVLLAAIQLLHSIFTYRDYEILNYQMLQTVLEKINGMERDK 533 (593)
Q Consensus 482 ~~w~~~~~R~~f~~~~~v~ll~~i~~yrDye~lN~qlL~~l~~k~~~~~~~~ 533 (593)
.||||--+-.|++-+++.++|||++..+=..-=+-.+-.-+.++.+..||-+
T Consensus 7 nFWiiLAVaII~vS~~lglIlyCvcR~~lRqGkkweiakp~k~~~rdeEkmY 58 (133)
T PF15050_consen 7 NFWIILAVAIILVSVVLGLILYCVCRWQLRQGKKWEIAKPLKQKQRDEEKMY 58 (133)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccceeccchhhhcccHHHHH
Confidence 4899888888888889999999998754333333444445666666666555
No 159
>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=21.31 E-value=9.1e+02 Score=24.85 Aligned_cols=38 Identities=16% Similarity=0.273 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 007691 406 SMFIALDKLFALHNAMLLESRMIKAFFIYSLSIFIIYM 443 (593)
Q Consensus 406 ~vf~~Ld~l~~lhn~iL~E~~~~ksf~fY~~~~~~iym 443 (593)
.|+.-+.|-.-.-.-|..|+..|+...+|...++--|.
T Consensus 188 ~i~~q~~R~~fi~~Cv~~E~~~fq~~~~~~~~~l~~~~ 225 (246)
T cd07597 188 SIANQLNRSWFIRECILEETQLFQETQFLLTSILQEFV 225 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44554544433336788899999888888777776654
No 160
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=21.27 E-value=1e+03 Score=26.90 Aligned_cols=19 Identities=5% Similarity=-0.071 Sum_probs=8.4
Q ss_pred hHHHHHHHHHHHHHhHHHH
Q 007691 340 LQLLTKFQSEALAESRNTL 358 (593)
Q Consensus 340 L~~l~~~q~~aleesr~t~ 358 (593)
+..+..|-.+.+++.+..+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~ 147 (525)
T TIGR02231 129 WFQAFDFNGSEIERLLTED 147 (525)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444
No 161
>PRK11166 chemotaxis regulator CheZ; Provisional
Probab=21.07 E-value=8e+02 Score=25.37 Aligned_cols=77 Identities=14% Similarity=0.192 Sum_probs=40.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHhHHHHhhhhhhhcchhhhHHH---HHHHHHhhhhHHHHHHHhhhhhHHHHhhhHHHHHHH
Q 007691 172 NELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHR---VQNVAQTAKGVRDLMDILSRHSEVVYNQSKEIAASQ 248 (593)
Q Consensus 172 nkL~~sS~~a~~~Le~l~e~qe~Ll~~~~~~~dsL~s~~~Q---~~~laet~k~v~~~i~~l~~~s~~i~Eq~~eIa~sQ 248 (593)
..--+.|+.+.+..+...-.++.|.+....+......+... ...+.+-.+.+...+..+...+..+..+..+|..+|
T Consensus 60 ~~TEqAA~rtLnaVE~a~p~~d~l~~~a~~L~~~w~~l~~~~~~~~e~~~L~~~~~~fL~~v~~~t~~~~~~L~eI~mAq 139 (214)
T PRK11166 60 QMTEQAAERVLNAVEAAQPHQDQLEKEAKALDARWDEWFANPIELADARELVTDTRAFLADVPEHTSFTNAQLLEIMMAQ 139 (214)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHc
Confidence 33334444555555555555555555444333322222221 233444455666777777777777777777776654
No 162
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=21.07 E-value=1.9e+03 Score=28.56 Aligned_cols=110 Identities=15% Similarity=0.097 Sum_probs=56.0
Q ss_pred hhhHHHHHHHhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH---HHHHHHHH-HHHHHHHH
Q 007691 220 AKGVRDLMDILSRHSEVVYNQSKEIAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKE---VNNLRDEA-IEIEKEIS 295 (593)
Q Consensus 220 ~k~v~~~i~~l~~~s~~i~Eq~~eIa~sQ~eL~e~q~~m~~~l~~g~a~~~esy~~l~~~---~ekl~~~t-~~i~~ei~ 295 (593)
.-++..++..+.+-.+.+-+.+.+|..--+.+.+-+.... -+........++|..+.++ .++++++. .+|....+
T Consensus 870 ~~~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~-~~~~~l~e~~s~~e~~k~~~~~~~~~aqk~~~~ine~~s 948 (1294)
T KOG0962|consen 870 KQKIERSLARLQQLEEDIEELSEEITRLDSKVKELLERIQ-PLKVELEEAQSEKEELKNERNTSEKLAQKKRNDINEKVS 948 (1294)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhc-chhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555666666665544444444433322 1223334456666666666 56666655 45555555
Q ss_pred hhhhhhhhhhHHHHHHHhhhhhhhhcchHHHHHHh
Q 007691 296 KAGDAMFSSMEQLQRKADNIGSMAGDSLDKQQQLL 330 (593)
Q Consensus 296 ~~g~~l~~~m~~lq~~a~~I~~~~~~SLenQ~~LL 330 (593)
.+-.........-+-.-++++......++-+.+.+
T Consensus 949 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~e~l~~~ 983 (1294)
T KOG0962|consen 949 LLHQIYKLNECFEQYGFDDLRIAQLSESEEHLEER 983 (1294)
T ss_pred HHHHHHHhHHHHHHHhhhhhchHHHHHHHHHHHHH
Confidence 55445555555555555566644444444444333
No 163
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=20.92 E-value=1.2e+03 Score=26.03 Aligned_cols=55 Identities=18% Similarity=0.259 Sum_probs=27.8
Q ss_pred HHHHhHHHHHHHHHHHHHHhHHHHhhhhhhhcchhhhHHHHHHHHHhhhhHHHHHH
Q 007691 173 ELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMD 228 (593)
Q Consensus 173 kL~~sS~~a~~~Le~l~e~qe~Ll~~~~~~~dsL~s~~~Q~~~laet~k~v~~~i~ 228 (593)
.+.+........|..+.+.-..++...++ ...|.+++.-+.++|+++.++.....
T Consensus 260 ~~~~~~~~ll~~l~~l~~~l~~ll~~l~~-~~lL~Nle~lt~~LA~as~~l~~l~~ 314 (370)
T PLN03094 260 DLMEEARPLLLKIQAMAEDLQPLLSEVRD-SGLLKEVEKLTRVAAEASEDLRRLNS 314 (370)
T ss_pred HHHhhcHHHHHHHHHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333322222 45666777777777777776666643
No 164
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=20.85 E-value=6.1e+02 Score=22.70 Aligned_cols=17 Identities=24% Similarity=0.495 Sum_probs=9.3
Q ss_pred HHHHHHHHHHhhhchHHHHH
Q 007691 376 QEQLQEVHDHLFKNSRSILA 395 (593)
Q Consensus 376 q~ql~~~h~~l~~~s~sil~ 395 (593)
.++|...+. +|.++|+=
T Consensus 56 E~eL~~Lrk---ENrK~~~l 72 (85)
T PF15188_consen 56 EKELKLLRK---ENRKSMLL 72 (85)
T ss_pred HHHHHHHHH---hhhhhHHH
Confidence 444545555 67666554
No 165
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.63 E-value=5.5e+02 Score=24.40 Aligned_cols=29 Identities=24% Similarity=0.455 Sum_probs=12.8
Q ss_pred hhhhhhHHHHHHHhhhhhhhhcchHHHHHHhhc
Q 007691 300 AMFSSMEQLQRKADNIGSMAGDSLDKQQQLLHG 332 (593)
Q Consensus 300 ~l~~~m~~lq~~a~~I~~~~~~SLenQ~~LL~g 332 (593)
+|..|+-.|.+-+=+|+. -.+-|.+||+|
T Consensus 40 ~L~~kV~aLKsLs~dIg~----Ev~~qnklld~ 68 (118)
T KOG3385|consen 40 SLQQKVKALKSLSLDIGD----EVRTQNKLLDG 68 (118)
T ss_pred HHHHHHHHHHHHHHHhcc----ccchHHHHHHH
Confidence 333344444444444442 33445555544
No 166
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=20.25 E-value=1e+03 Score=27.59 Aligned_cols=31 Identities=10% Similarity=0.134 Sum_probs=23.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhHHHHhh
Q 007691 168 ERLVNELKKSADYTEHKLEIIEEKSDTLLQS 198 (593)
Q Consensus 168 E~tVnkL~~sS~~a~~~Le~l~e~qe~Ll~~ 198 (593)
..||..|.....++...|..+....+.|.++
T Consensus 58 ~DTlrTlva~~k~~r~~~~~l~~~N~~l~~e 88 (472)
T TIGR03752 58 ADTLRTLVAEVKELRKRLAKLISENEALKAE 88 (472)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577788888888888888888877777664
No 167
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=20.23 E-value=4.3e+02 Score=25.08 Aligned_cols=49 Identities=22% Similarity=0.269 Sum_probs=26.7
Q ss_pred HHHHhhhhHHHHHHHhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 007691 215 NVAQTAKGVRDLMDILSRHSEVVYNQSKEIAASQTELQEGQVRIKEKLD 263 (593)
Q Consensus 215 ~laet~k~v~~~i~~l~~~s~~i~Eq~~eIa~sQ~eL~e~q~~m~~~l~ 263 (593)
.+..++|.+...|+.|=....+--+|.+.|..=+.|+.+.-.++.++++
T Consensus 77 dIi~kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~ 125 (144)
T PF11221_consen 77 DIIRKAKQIEYLIDSLPGIEVSEEEQLKRIKELEEENEEAEEELQEAVK 125 (144)
T ss_dssp HHHHHHHHHHHHHHHSTTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778888888865553333344555555555555444444444433
No 168
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.20 E-value=1.5e+03 Score=27.00 Aligned_cols=72 Identities=14% Similarity=0.225 Sum_probs=48.2
Q ss_pred HhHhhhcCChHHHHHHH------------HHHHhHHHHHHHHHhhhhH-HHHHHHHHHHHHhHHHHHHHHHHHHHHhHHH
Q 007691 129 MINCLKKIDDEEHKIYL------------AFLLETNSICYQLQAHGFQ-YETERLVNELKKSADYTEHKLEIIEEKSDTL 195 (593)
Q Consensus 129 i~~Ct~~Mdd~af~vY~------------eF~~ht~sIC~~Lq~q~fq-~~TE~tVnkL~~sS~~a~~~Le~l~e~qe~L 195 (593)
-.+|..-|.+ +-++|+ +|--|+..+|-....|.=. ...++-+.++.+.++...++.+.+.++|+.|
T Consensus 557 ~~E~~~lL~~-a~~vfrEqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L 635 (741)
T KOG4460|consen 557 PEECLQLLSR-ATQVFREQYILKQDLVKEEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDL 635 (741)
T ss_pred cHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 5667665543 234444 4556888888766543211 2345667888888899999999999999888
Q ss_pred Hhhhhh
Q 007691 196 LQSSNQ 201 (593)
Q Consensus 196 l~~~~~ 201 (593)
.+-++.
T Consensus 636 ~~~~~~ 641 (741)
T KOG4460|consen 636 MNRMKK 641 (741)
T ss_pred HHHHHH
Confidence 776543
No 169
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=20.15 E-value=5.8e+02 Score=23.68 Aligned_cols=35 Identities=20% Similarity=0.313 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Q 007691 276 LGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQR 310 (593)
Q Consensus 276 l~~~~ekl~~~t~~i~~ei~~~g~~l~~~m~~lq~ 310 (593)
|.+.++++-+.-.+++.|++++|..+-+..+.|++
T Consensus 58 L~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~ 92 (102)
T PF01519_consen 58 LTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQS 92 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555667888888888777777764
Done!