Query 007691
Match_columns 593
No_of_seqs 94 out of 96
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 08:05:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007691.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007691hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zx6_A HAMP, methyl-accepting 93.2 8.4 0.00029 39.4 27.8 21 276-296 186-206 (341)
2 2ch7_A Methyl-accepting chemot 93.1 7.1 0.00024 38.3 31.3 11 279-289 167-177 (309)
3 3zx6_A HAMP, methyl-accepting 90.5 17 0.00058 37.1 29.0 7 311-317 200-206 (341)
4 1qu7_A Methyl-accepting chemot 85.8 27 0.00093 33.9 24.0 46 320-365 146-191 (227)
5 3vkg_A Dynein heavy chain, cyt 84.2 1.2E+02 0.0041 40.5 24.8 46 167-212 1922-1967(3245)
6 4f7g_B Talin-1; alpha-helix bu 83.7 5.6 0.00019 39.3 10.0 143 128-285 36-188 (216)
7 1deq_A Fibrinogen (alpha chain 76.8 30 0.001 36.9 13.2 86 249-344 116-201 (390)
8 3ghg_A Fibrinogen alpha chain; 76.4 15 0.00053 40.5 11.3 80 250-341 114-195 (562)
9 3p8c_F ABL interactor 2; actin 70.2 71 0.0024 30.2 12.8 79 254-336 5-83 (159)
10 3r2p_A Apolipoprotein A-I; amp 67.5 66 0.0023 30.1 12.3 20 170-189 19-38 (185)
11 3oja_B Anopheles plasmodium-re 66.9 1.2E+02 0.0041 32.4 15.7 19 129-147 389-407 (597)
12 3etw_A Adhesin A; antiparallel 64.4 82 0.0028 28.4 11.7 64 222-285 13-85 (119)
13 1deq_A Fibrinogen (alpha chain 64.4 60 0.002 34.6 12.2 32 215-246 64-95 (390)
14 3oja_B Anopheles plasmodium-re 63.3 32 0.0011 36.8 10.4 9 168-176 437-445 (597)
15 1m1j_B Fibrinogen beta chain; 63.2 1.1E+02 0.0037 33.4 14.3 6 58-63 44-49 (464)
16 2dfs_A Myosin-5A; myosin-V, in 59.7 94 0.0032 37.0 14.2 27 262-288 989-1015(1080)
17 3vkg_A Dynein heavy chain, cyt 56.5 5E+02 0.017 34.9 27.6 30 436-469 2110-2139(3245)
18 2a01_A Apolipoprotein A-I; fou 55.7 1.6E+02 0.0053 28.8 15.8 19 168-186 16-34 (243)
19 3g67_A Methyl-accepting chemot 54.8 1.6E+02 0.0054 28.6 27.0 24 273-296 114-137 (213)
20 3iv1_A Tumor susceptibility ge 54.6 68 0.0023 27.0 8.6 41 244-288 30-70 (78)
21 3g67_A Methyl-accepting chemot 51.8 1.8E+02 0.006 28.2 23.3 95 265-363 113-207 (213)
22 3euh_A Protein KICB, chromosom 50.9 1.5E+02 0.005 32.0 12.4 116 152-272 109-239 (440)
23 2l7b_A Apolipoprotein E, APO-E 50.3 9.2 0.00032 39.3 3.3 60 244-303 116-176 (307)
24 1gs9_A Apolipoprotein E, APOE4 50.3 54 0.0019 30.7 8.3 16 171-186 37-52 (165)
25 3na7_A HP0958; flagellar bioge 50.1 1.9E+02 0.0066 28.2 22.8 26 271-296 90-115 (256)
26 1m1j_A Fibrinogen alpha subuni 41.9 3.2E+02 0.011 29.9 13.4 31 215-245 62-92 (491)
27 2avr_X Adhesion A; antiparalle 41.3 2E+02 0.0069 25.9 11.5 50 221-270 12-61 (119)
28 3ghg_A Fibrinogen alpha chain; 40.4 2.5E+02 0.0085 31.2 12.5 16 120-135 33-48 (562)
29 1m1j_A Fibrinogen alpha subuni 39.2 3.4E+02 0.012 29.7 13.1 40 249-292 114-153 (491)
30 1nfn_A Apolipoprotein E3; lipi 38.8 1.7E+02 0.0058 27.8 9.9 12 302-313 149-160 (191)
31 1t3j_A Mitofusin 1; coiled coi 37.7 1E+02 0.0035 26.9 7.4 28 272-299 65-92 (96)
32 3ghg_B Fibrinogen beta chain; 37.5 3.4E+02 0.012 29.5 13.0 29 219-247 96-124 (461)
33 2dfs_A Myosin-5A; myosin-V, in 35.7 2.2E+02 0.0077 33.8 12.3 41 261-301 981-1021(1080)
34 3ghg_B Fibrinogen beta chain; 33.6 4.7E+02 0.016 28.5 13.3 19 278-296 102-120 (461)
35 2xzr_A Immunoglobulin-binding 32.9 2.5E+02 0.0087 24.6 11.9 55 212-273 39-93 (114)
36 3o0z_A RHO-associated protein 31.5 3.4E+02 0.012 25.7 18.0 41 179-219 16-56 (168)
37 2v71_A Nuclear distribution pr 30.5 3.7E+02 0.013 25.9 17.0 103 177-296 25-127 (189)
38 1aq5_A Matrilin-1, CMP, cartil 30.2 82 0.0028 24.2 4.8 29 162-190 16-44 (47)
39 1deb_A APC protein, adenomatou 29.0 1E+02 0.0036 24.1 5.3 42 272-317 4-45 (54)
40 3mq9_A Bone marrow stromal ant 28.7 5.1E+02 0.017 26.8 12.8 20 283-302 395-414 (471)
41 4ioe_A Secreted protein ESXB; 26.4 2.4E+02 0.0083 22.3 8.5 17 280-296 65-81 (93)
42 2dnx_A Syntaxin-12; snare, HAB 25.4 3.5E+02 0.012 23.9 10.6 9 349-357 113-121 (130)
43 2efl_A Formin-binding protein 25.0 4.6E+02 0.016 25.1 29.3 81 216-296 74-155 (305)
44 2qih_A Protein USPA1; trimeric 24.4 4.3E+02 0.015 24.5 16.4 53 313-391 75-127 (157)
45 3tnu_A Keratin, type I cytoske 23.2 3.9E+02 0.013 23.6 9.8 67 237-307 40-106 (131)
No 1
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=93.21 E-value=8.4 Score=39.39 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 007691 276 LGKEVNNLRDEAIEIEKEISK 296 (593)
Q Consensus 276 l~~~~ekl~~~t~~i~~ei~~ 296 (593)
+++|+-+|.+++.+--.+|..
T Consensus 186 VAdEVRkLAe~t~~at~~I~~ 206 (341)
T 3zx6_A 186 VAGEVRNLAQRSAQAAREIKS 206 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555444444444
No 2
>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B
Probab=93.12 E-value=7.1 Score=38.31 Aligned_cols=11 Identities=27% Similarity=0.558 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 007691 279 EVNNLRDEAIE 289 (593)
Q Consensus 279 ~~ekl~~~t~~ 289 (593)
++.+|.+++.+
T Consensus 167 eIr~LA~~t~~ 177 (309)
T 2ch7_A 167 EIRKLAEESQQ 177 (309)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33334333333
No 3
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=90.45 E-value=17 Score=37.12 Aligned_cols=7 Identities=43% Similarity=0.368 Sum_probs=2.8
Q ss_pred HHhhhhh
Q 007691 311 KADNIGS 317 (593)
Q Consensus 311 ~a~~I~~ 317 (593)
++.+|..
T Consensus 200 at~~I~~ 206 (341)
T 3zx6_A 200 AAREIKS 206 (341)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3344443
No 4
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=85.81 E-value=27 Score=33.94 Aligned_cols=46 Identities=9% Similarity=0.154 Sum_probs=22.3
Q ss_pred hcchHHHHHHhhchhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHh
Q 007691 320 GDSLDKQQQLLHGQSTALESLQLLTKFQSEALAESRNTLQELAEYG 365 (593)
Q Consensus 320 ~~SLenQ~~LL~gQ~~a~~~L~~l~~~q~~aleesr~t~q~la~~~ 365 (593)
+.+++.=..-...-...+..+..-.+-|....++-...+..+++..
T Consensus 146 ~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~i~~i~~~~ 191 (227)
T 1qu7_A 146 GETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVT 191 (227)
T ss_dssp TTHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443344444444444454445555555555555555555443
No 5
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=84.16 E-value=1.2e+02 Score=40.49 Aligned_cols=46 Identities=11% Similarity=0.114 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhHHHHhhhhhhhcchhhhHHH
Q 007691 167 TERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHR 212 (593)
Q Consensus 167 TE~tVnkL~~sS~~a~~~Le~l~e~qe~Ll~~~~~~~dsL~s~~~Q 212 (593)
-+.=+.||.+++..+.+.=+.+.+.+.+|.+...+....|..|...
T Consensus 1922 l~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~ 1967 (3245)
T 3vkg_A 1922 LNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQD 1967 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666666555566666666655555544444444433
No 6
>4f7g_B Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus} PDB: 2kbb_A 2kgx_A
Probab=83.70 E-value=5.6 Score=39.28 Aligned_cols=143 Identities=17% Similarity=0.235 Sum_probs=80.0
Q ss_pred cHhHhhhcCChHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHhhhhhhhcchh
Q 007691 128 AMINCLKKIDDEEHKIYLAFLLETNSICYQLQAHGFQYETERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLD 207 (593)
Q Consensus 128 si~~Ct~~Mdd~af~vY~eF~~ht~sIC~~Lq~q~fq~~TE~tVnkL~~sS~~a~~~Le~l~e~qe~Ll~~~~~~~dsL~ 207 (593)
.+..|++++|...+.++..-+-.-..+ -.+.||++....+..|...... .....+...++|-..+.++..++
T Consensus 36 ~in~~i~dLd~AsLaA~s~~L~~~~~~----s~~~~qeq~~~~~~eL~~~i~~---l~~AAk~~~e~LG~av~~~a~~~- 107 (216)
T 4f7g_B 36 ALNSCLRDLDQASLAAVSQQLAPREGI----SQEALHTQMLTAVQEISHLIEP---LASAARAEASQLGHKVSQMAQYF- 107 (216)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCCSS----CHHHHHHHHHHHHHHHHHHHHH---HHHHHHHCHHHHHHHHHHHHHTH-
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCc----cHHHHHHHHHHHHHHHHHhhhH---HHHhhhcCHHHHhHHHHHHHHHh-
Confidence 477788888777777666544432221 1245666555555444443332 22333444455555544433333
Q ss_pred hhHHHHHHHHHhhhhHHHHHHHhhhhhHHHHhhhHHHHHHHHHHH------HH----HHHHHHHHHHHHHHHHHHHHhhH
Q 007691 208 SIDHRVQNVAQTAKGVRDLMDILSRHSEVVYNQSKEIAASQTELQ------EG----QVRIKEKLDEGMATLIDAYSNLG 277 (593)
Q Consensus 208 s~~~Q~~~laet~k~v~~~i~~l~~~s~~i~Eq~~eIa~sQ~eL~------e~----q~~m~~~l~~g~a~~~esy~~l~ 277 (593)
+.|..+++-..+.+-+ ++.+-++++++|..+.+-.+|- .| =..++..++++...+.|+-..+-
T Consensus 108 ------epLv~aa~gaAS~t~d-s~~Q~~lLdq~Ktv~es~lqlv~AaK~agGNPk~a~~~H~~l~eaa~~l~eai~d~~ 180 (216)
T 4f7g_B 108 ------EPLTLAAVGAASKTLS-HPQQMALLDQTKTLAESALQLLYTAKEAGGNPKQAAHTQEALEEAVQMMTEAVEDLT 180 (216)
T ss_dssp ------HHHHHHHHHHHHHCSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHhhhhHHHHHHHHHHHHHHHH
Confidence 5566666666555443 4556677788888777777763 11 23356667777777777766666
Q ss_pred HHHHHHHH
Q 007691 278 KEVNNLRD 285 (593)
Q Consensus 278 ~~~ekl~~ 285 (593)
.++++...
T Consensus 181 ~tl~~~as 188 (216)
T 4f7g_B 181 TTLNEAAS 188 (216)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665444
No 7
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=76.81 E-value=30 Score=36.89 Aligned_cols=86 Identities=16% Similarity=0.122 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhhhhhhhcchHHHHH
Q 007691 249 TELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIGSMAGDSLDKQQQ 328 (593)
Q Consensus 249 ~eL~e~q~~m~~~l~~g~a~~~esy~~l~~~~ekl~~~t~~i~~ei~~~g~~l~~~m~~lq~~a~~I~~~~~~SLenQ~~ 328 (593)
.+|...+.-++++|++.+..| +.|..-+++++.+-..||..|..-- =+|+-.|=...+-.|.- ++-++|++
T Consensus 116 ~eLe~~i~~lk~~V~~q~~~i----r~Lq~~l~~q~~kiqRLE~~Id~c~--~~C~~sC~~~l~~~vD~---e~ye~qqK 186 (390)
T 1deq_A 116 EDLRSRIEILRRKVIEQVQRI----NLLQKNVRDQLVDMKRLEVDIDIKI--RSCKGSCSRALEHKVDL---EDYKNQQK 186 (390)
T ss_pred HHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHh--cccccccchhhhhhccH---HHHHHHHH
Confidence 466667777888888777644 3455555556555555666553211 12333332211112221 33444444
Q ss_pred HhhchhhHHHhhHHHH
Q 007691 329 LLHGQSTALESLQLLT 344 (593)
Q Consensus 329 LL~gQ~~a~~~L~~l~ 344 (593)
.| .|+.|++-|..+.
T Consensus 187 QL-~qv~a~~llP~~~ 201 (390)
T 1deq_A 187 QL-EQVIAINLLPSRD 201 (390)
T ss_pred HH-Hhhhhhccccccc
Confidence 43 3666666665544
No 8
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=76.36 E-value=15 Score=40.53 Aligned_cols=80 Identities=18% Similarity=0.133 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhhh--hhhhcchHHHH
Q 007691 250 ELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIG--SMAGDSLDKQQ 327 (593)
Q Consensus 250 eL~e~q~~m~~~l~~g~a~~~esy~~l~~~~ekl~~~t~~i~~ei~~~g~~l~~~m~~lq~~a~~I~--~~~~~SLenQ~ 327 (593)
||+.....|+++|+..+.+| +.|...+++++.+-..||. ++..+|..=+..+..-. .+-.++-++|+
T Consensus 114 ELRRrIqyLKekVdnQlsnI----rvLQsnLedq~~kIQRLEv-------DIdiqirsCKgsCsr~~~~~vd~~sY~~~Q 182 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHI----QLLQKNVRAQLVDMKRLEV-------DIDIKIRSCRGSCSRALAREVDLKDYEDQQ 182 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH-------HHHHHHHHGGGTBSCCCCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH-------HHHHHHHhccccccchheeecchHHHHHHH
Confidence 67777777888888776555 3344444444443333333 33334444443333311 12235667766
Q ss_pred HHhhchhhHHHhhH
Q 007691 328 QLLHGQSTALESLQ 341 (593)
Q Consensus 328 ~LL~gQ~~a~~~L~ 341 (593)
+.| .|..|.+.+.
T Consensus 183 KQL-eQv~a~dL~p 195 (562)
T 3ghg_A 183 KQL-EQVIAKDLLP 195 (562)
T ss_dssp HHH-HHHHTTCCCC
T ss_pred HHH-HHHhhcccCC
Confidence 655 3566654443
No 9
>3p8c_F ABL interactor 2; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=70.18 E-value=71 Score=30.16 Aligned_cols=79 Identities=20% Similarity=0.259 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhhhhhhhcchHHHHHHhhch
Q 007691 254 GQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQ 333 (593)
Q Consensus 254 ~q~~m~~~l~~g~a~~~esy~~l~~~~ekl~~~t~~i~~ei~~~g~~l~~~m~~lq~~a~~I~~~~~~SLenQ~~LL~gQ 333 (593)
.|.-+.+.|-+|.+.+.++|.+|.+-.|=-.+.-+.=..+=..+-++..--.+.|-+.|..|+..+. +--.|||-|
T Consensus 5 l~~l~~~eiP~~r~~L~~s~~nL~~vAdYCE~nY~qs~dK~~aleeTK~Ya~qsLaSVAyqIn~lA~----~ll~lLd~Q 80 (159)
T 3p8c_F 5 LQMLLEEEIPGGRRALFDSYTNLERVADYCENNYIQSADKQRALEETKAYTTQSLASVAYLINTLAN----NVLQMLDIQ 80 (159)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 3445566777777777777777776555443322211122233344555566788888888887663 233355444
Q ss_pred hhH
Q 007691 334 STA 336 (593)
Q Consensus 334 ~~a 336 (593)
...
T Consensus 81 ~~~ 83 (159)
T 3p8c_F 81 ASQ 83 (159)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 10
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=67.52 E-value=66 Score=30.09 Aligned_cols=20 Identities=25% Similarity=0.132 Sum_probs=15.6
Q ss_pred HHHHHHHhHHHHHHHHHHHH
Q 007691 170 LVNELKKSADYTEHKLEIIE 189 (593)
Q Consensus 170 tVnkL~~sS~~a~~~Le~l~ 189 (593)
-|++|..+|..+.+.|....
T Consensus 19 Y~~~l~~~a~~~ve~l~~se 38 (185)
T 3r2p_A 19 YVDVLKDSGRDYVSQFEGSA 38 (185)
T ss_dssp HTHHHHHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHHHHHHcch
Confidence 36788888988888888755
No 11
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=66.90 E-value=1.2e+02 Score=32.37 Aligned_cols=19 Identities=21% Similarity=0.193 Sum_probs=9.3
Q ss_pred HhHhhhcCChHHHHHHHHH
Q 007691 129 MINCLKKIDDEEHKIYLAF 147 (593)
Q Consensus 129 i~~Ct~~Mdd~af~vY~eF 147 (593)
...|....+.....-..++
T Consensus 389 ~~~cc~~~~~~~~~~~~~~ 407 (597)
T 3oja_B 389 HGLCCKESDKPYLDRLLQY 407 (597)
T ss_dssp TTEEEECCSSHHHHHHHHH
T ss_pred CCccccCCCccchhHHHHH
Confidence 4456665555444433333
No 12
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=64.43 E-value=82 Score=28.42 Aligned_cols=64 Identities=13% Similarity=0.216 Sum_probs=36.9
Q ss_pred hHHHHHHHhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHhhHHHHHHHHH
Q 007691 222 GVRDLMDILSRHSEVVYNQSKEIAASQTELQEGQVRIKEKLDEGMATL---------IDAYSNLGKEVNNLRD 285 (593)
Q Consensus 222 ~v~~~i~~l~~~s~~i~Eq~~eIa~sQ~eL~e~q~~m~~~l~~g~a~~---------~esy~~l~~~~ekl~~ 285 (593)
++..+++.|.+.-..=|.+-+.++.+..+--..+..|+..|++-++.+ .+.|..+.+...+++.
T Consensus 13 ~Leae~q~L~~~E~qry~~eka~AE~A~~~La~~~~l~~~i~er~~~i~~~~~~~~yk~~y~~l~k~Y~~~~k 85 (119)
T 3etw_A 13 ALDAEYQNLANQEEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDALK 85 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 334444444454455566666666665555556677888888877777 3445555554444433
No 13
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=64.42 E-value=60 Score=34.60 Aligned_cols=32 Identities=16% Similarity=0.181 Sum_probs=17.2
Q ss_pred HHHHhhhhHHHHHHHhhhhhHHHHhhhHHHHH
Q 007691 215 NVAQTAKGVRDLMDILSRHSEVVYNQSKEIAA 246 (593)
Q Consensus 215 ~laet~k~v~~~i~~l~~~s~~i~Eq~~eIa~ 246 (593)
.+......+...|+++.+-+.+++.-+++|.+
T Consensus 64 ~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~ 95 (390)
T 1deq_A 64 DFTSRINKLRDSLFNYQKNSKDSNTLTKNIVE 95 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33333444455556666666666666665444
No 14
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=63.25 E-value=32 Score=36.83 Aligned_cols=9 Identities=0% Similarity=0.088 Sum_probs=0.0
Q ss_pred HHHHHHHHH
Q 007691 168 ERLVNELKK 176 (593)
Q Consensus 168 E~tVnkL~~ 176 (593)
...++++..
T Consensus 437 ~~~~~~~~~ 445 (597)
T 3oja_B 437 SHYITQQGG 445 (597)
T ss_dssp ---------
T ss_pred HHHHHHHhh
Confidence 333444443
No 15
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=63.23 E-value=1.1e+02 Score=33.39 Aligned_cols=6 Identities=0% Similarity=0.008 Sum_probs=0.0
Q ss_pred chhhhH
Q 007691 58 NEKGKQ 63 (593)
Q Consensus 58 ~~rG~k 63 (593)
.-||+.
T Consensus 44 ~~~~~~ 49 (464)
T 1m1j_B 44 GYQPRP 49 (464)
T ss_dssp ------
T ss_pred CcCCCC
Confidence 344443
No 16
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=59.69 E-value=94 Score=37.02 Aligned_cols=27 Identities=22% Similarity=0.206 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 007691 262 LDEGMATLIDAYSNLGKEVNNLRDEAI 288 (593)
Q Consensus 262 l~~g~a~~~esy~~l~~~~ekl~~~t~ 288 (593)
+++-++.+.+.++.+.++.+.+.+...
T Consensus 989 L~~e~~~l~~~~~~~~ke~~~lee~~~ 1015 (1080)
T 2dfs_A 989 LQEEIAKLRKELHQTQTEKKTIEEWAD 1015 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555554444333
No 17
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=56.48 E-value=5e+02 Score=34.91 Aligned_cols=30 Identities=23% Similarity=0.206 Sum_probs=13.3
Q ss_pred HHHHHHHHhcCccccccchhhHHHHHHHHHHHHH
Q 007691 436 LSIFIIYMLTSTKQTYTVRPRLYIGLCLTFLIEV 469 (593)
Q Consensus 436 ~~~~~iymlTStk~T~saR~~L~~lL~~~l~iEr 469 (593)
++.|+.|+ -+-|..-|-.|+ --+...+-++
T Consensus 2110 aaafisY~---G~f~~~~R~~l~-~~W~~~l~~~ 2139 (3245)
T 3vkg_A 2110 ASAFLAYI---GFFDQNFRTDLM-RKWMIRLDSV 2139 (3245)
T ss_dssp HHHHHHTG---GGSCHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHc---CCCCHHHHHHHH-HHHHHHHHhc
Confidence 34445553 233444555554 2344444443
No 18
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=55.70 E-value=1.6e+02 Score=28.82 Aligned_cols=19 Identities=26% Similarity=0.212 Sum_probs=11.6
Q ss_pred HHHHHHHHHhHHHHHHHHH
Q 007691 168 ERLVNELKKSADYTEHKLE 186 (593)
Q Consensus 168 E~tVnkL~~sS~~a~~~Le 186 (593)
...|+++..++..+.+.++
T Consensus 16 ~~Y~~q~~~sa~~~~~~~~ 34 (243)
T 2a01_A 16 TVYVDVLKDSGRDYVSQFE 34 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHH
Confidence 3456677777776655553
No 19
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=54.84 E-value=1.6e+02 Score=28.59 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=14.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHh
Q 007691 273 YSNLGKEVNNLRDEAIEIEKEISK 296 (593)
Q Consensus 273 y~~l~~~~ekl~~~t~~i~~ei~~ 296 (593)
|-=+++++.+|.+++.+.-++|..
T Consensus 114 FaVVA~Evr~La~~t~~~~~~I~~ 137 (213)
T 3g67_A 114 FMIVANEVQNLSNETNEVTKQIVE 137 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666666666555555554
No 20
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=54.62 E-value=68 Score=27.03 Aligned_cols=41 Identities=17% Similarity=0.379 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 007691 244 IAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAI 288 (593)
Q Consensus 244 Ia~sQ~eL~e~q~~m~~~l~~g~a~~~esy~~l~~~~ekl~~~t~ 288 (593)
+-..+.+|.+|+.+ |++.+.++...-..+-+.++.++..-.
T Consensus 30 LrrT~~EL~~G~~K----L~~mi~~l~~E~~~l~~ni~~lk~K~~ 70 (78)
T 3iv1_A 30 LKRTEEDLKKGHQK----LEEMVTRLDQEVAEVDKNIELLKKKDE 70 (78)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677778777664 445555665555555555555555433
No 21
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=51.76 E-value=1.8e+02 Score=28.24 Aligned_cols=95 Identities=16% Similarity=0.324 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhhhhhhhcchHHHHHHhhchhhHHHhhHHHH
Q 007691 265 GMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQSTALESLQLLT 344 (593)
Q Consensus 265 g~a~~~esy~~l~~~~ekl~~~t~~i~~ei~~~g~~l~~~m~~lq~~a~~I~~~~~~SLenQ~~LL~gQ~~a~~~L~~l~ 344 (593)
|++-+-+.-+.|+....+...+-.++-.+|...-......|.......+.+ ++.+++=...+......++.+....
T Consensus 113 GFaVVA~Evr~La~~t~~~~~~I~~~i~~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~ 188 (213)
T 3g67_A 113 GFMIVANEVQNLSNETNEVTKQIVEKAREILESSQRSLENLEFMANLFETV----GKTLQNMVRFMENNVKLLQEVRNSL 188 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777666655544444433333333332333333322222222 2233333333444444455555444
Q ss_pred HHHHHHHHHhHHHHHHHHH
Q 007691 345 KFQSEALAESRNTLQELAE 363 (593)
Q Consensus 345 ~~q~~aleesr~t~q~la~ 363 (593)
.-++.++++....++..++
T Consensus 189 ~~~~~~~~e~s~~i~~i~~ 207 (213)
T 3g67_A 189 DTSKESLSEKSAEIDSATK 207 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5455566666666655543
No 22
>3euh_A Protein KICB, chromosome partition protein MUKF; chromosome condensation, condensin, non-SMC subunit, kleisin, calcium, cell cycle, cell division; 2.90A {Escherichia coli} PDB: 3rpu_A
Probab=50.93 E-value=1.5e+02 Score=32.04 Aligned_cols=116 Identities=23% Similarity=0.229 Sum_probs=63.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHH---------HH-hhhhhhhcchhhhHHHHHHHHHhhh
Q 007691 152 NSICYQLQAHGFQYETERLVNELKKSADYTEHKLEIIEEKSDT---------LL-QSSNQIHDSLDSIDHRVQNVAQTAK 221 (593)
Q Consensus 152 ~sIC~~Lq~q~fq~~TE~tVnkL~~sS~~a~~~Le~l~e~qe~---------Ll-~~~~~~~dsL~s~~~Q~~~laet~k 221 (593)
.-+=||+++..|- ++++=-.|..-+.+..+.++..++..++ .+ =++ .|-+++|+..|.-+-+.+.
T Consensus 109 gi~dyy~rqrefs--~l~LS~qls~va~EL~~a~~Aaee~~~e~~W~~~V~~~LkySV---aeifd~Idl~QR~mDeQQ~ 183 (440)
T 3euh_A 109 GITDYYIRQREFS--TLRLSMQLSIVAGELKRAADAAEEGGDEFHWHRNVYAPLKYSV---AEIFDSIDLTQRLMDEQQQ 183 (440)
T ss_dssp HHHHHTTSCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHTTHHHHHHTH---HHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhhHHHh--HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCcH---HHHHhhhhhHHHHHHHHHH
Confidence 3456899999998 7777777777777777777777763211 12 222 3345566666666666666
Q ss_pred hHHHHHHHhhhhh-----HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007691 222 GVRDLMDILSRHS-----EVVYNQSKEIAASQTELQEGQVRIKEKLDEGMATLIDA 272 (593)
Q Consensus 222 ~v~~~i~~l~~~s-----~~i~Eq~~eIa~sQ~eL~e~q~~m~~~l~~g~a~~~es 272 (593)
+|+..|..+.... .+......|.+..-.||++--..-.+++..++.+|+++
T Consensus 184 ~vk~eIA~LL~~dW~~AI~~Ce~LL~Ets~tLRELqdtL~aagD~lq~qLl~IQ~~ 239 (440)
T 3euh_A 184 QVKDDIAQLLNKDWRAAISSCELLLSETSGTLRELQDTLEAAGDKLQANLLRIQDA 239 (440)
T ss_dssp HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 6666666444321 11122333344444444443333344444444444433
No 23
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=50.32 E-value=9.2 Score=39.33 Aligned_cols=60 Identities=10% Similarity=0.087 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHhhhhhhhh
Q 007691 244 IAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEV-NNLRDEAIEIEKEISKAGDAMFS 303 (593)
Q Consensus 244 Ia~sQ~eL~e~q~~m~~~l~~g~a~~~esy~~l~~~~-ekl~~~t~~i~~ei~~~g~~l~~ 303 (593)
+...+.+|.-....|+.++...|.-+.....-...++ +++.+.+.+|..++.-.++.|-.
T Consensus 116 lEelR~~L~Py~~el~~~l~~~~eelr~kL~Py~~EL~~~~~~~~eeLr~~L~py~eeLr~ 176 (307)
T 2l7b_A 116 MEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAVYQAGARE 176 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHH
Confidence 4455555555555566666655655655555555554 44445666666676666555543
No 24
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=50.32 E-value=54 Score=30.67 Aligned_cols=16 Identities=6% Similarity=0.121 Sum_probs=9.5
Q ss_pred HHHHHHhHHHHHHHHH
Q 007691 171 VNELKKSADYTEHKLE 186 (593)
Q Consensus 171 VnkL~~sS~~a~~~Le 186 (593)
|+++..++..+.+.|.
T Consensus 37 ~~q~~~~a~~~v~ql~ 52 (165)
T 1gs9_A 37 LRWVQTLSEQVQEELL 52 (165)
T ss_dssp HHHHHHCCHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHH
Confidence 4556666666666555
No 25
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=50.13 E-value=1.9e+02 Score=28.21 Aligned_cols=26 Identities=15% Similarity=0.256 Sum_probs=14.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHh
Q 007691 271 DAYSNLGKEVNNLRDEAIEIEKEISK 296 (593)
Q Consensus 271 esy~~l~~~~ekl~~~t~~i~~ei~~ 296 (593)
+.|+.+.++++.++.+-..++.+|..
T Consensus 90 kE~~aL~kEie~~~~~i~~lE~eile 115 (256)
T 3na7_A 90 RELRSLNIEEDIAKERSNQANREIEN 115 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666555555555555544
No 26
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=41.95 E-value=3.2e+02 Score=29.92 Aligned_cols=31 Identities=13% Similarity=0.063 Sum_probs=14.6
Q ss_pred HHHHhhhhHHHHHHHhhhhhHHHHhhhHHHH
Q 007691 215 NVAQTAKGVRDLMDILSRHSEVVYNQSKEIA 245 (593)
Q Consensus 215 ~laet~k~v~~~i~~l~~~s~~i~Eq~~eIa 245 (593)
++......+...|+++.+.+.+++.-.++|.
T Consensus 62 dv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~ 92 (491)
T 1m1j_A 62 NYSQRIDNIRQQLADSQNKYKTSNRVIVETI 92 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 3333444444445555555555555444433
No 27
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=41.33 E-value=2e+02 Score=25.95 Aligned_cols=50 Identities=12% Similarity=0.193 Sum_probs=32.5
Q ss_pred hhHHHHHHHhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007691 221 KGVRDLMDILSRHSEVVYNQSKEIAASQTELQEGQVRIKEKLDEGMATLI 270 (593)
Q Consensus 221 k~v~~~i~~l~~~s~~i~Eq~~eIa~sQ~eL~e~q~~m~~~l~~g~a~~~ 270 (593)
++++...+-|-+.-.+-|.+-+.++.+=.+--..|..|..+|++-++.+.
T Consensus 12 ~~LEaeyq~L~~kE~qrynqeka~AE~A~~~L~~~~~m~~~i~ek~~~i~ 61 (119)
T 2avr_X 12 QALDAEYQNLANQEEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQ 61 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444555777777776655555677888888888888873
No 28
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=40.36 E-value=2.5e+02 Score=31.22 Aligned_cols=16 Identities=19% Similarity=0.526 Sum_probs=9.9
Q ss_pred CCCCCCcccHhHhhhc
Q 007691 120 FPNCDQKSAMINCLKK 135 (593)
Q Consensus 120 fp~C~~~~si~~Ct~~ 135 (593)
||-|.++.=-..|-.+
T Consensus 33 WPfCaDeDwGvkCPSG 48 (562)
T 3ghg_A 33 WPFCSDEDWNYKCPSG 48 (562)
T ss_dssp CCBCCSSSBTTEEECH
T ss_pred CCcccccccCCCCCcc
Confidence 6668766555566544
No 29
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=39.21 E-value=3.4e+02 Score=29.72 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 007691 249 TELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEK 292 (593)
Q Consensus 249 ~eL~e~q~~m~~~l~~g~a~~~esy~~l~~~~ekl~~~t~~i~~ 292 (593)
.+|...+.-|++++++.+..| +.|...+++++.+-..||.
T Consensus 114 ~eLe~ri~yIK~kVd~qi~~I----rvLq~~l~~q~skIQRLE~ 153 (491)
T 1m1j_A 114 TELRRRIVTLKQRVATQVNRI----KALQNSIQEQVVEMKRLEV 153 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 467777888888888877554 3444444444443333333
No 30
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=38.76 E-value=1.7e+02 Score=27.78 Aligned_cols=12 Identities=17% Similarity=0.440 Sum_probs=5.5
Q ss_pred hhhhHHHHHHHh
Q 007691 302 FSSMEQLQRKAD 313 (593)
Q Consensus 302 ~~~m~~lq~~a~ 313 (593)
..+|+.|+.+..
T Consensus 149 ~~~~eeLr~~l~ 160 (191)
T 1nfn_A 149 LRDADDLQKRLA 160 (191)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhH
Confidence 344555554433
No 31
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=37.66 E-value=1e+02 Score=26.86 Aligned_cols=28 Identities=18% Similarity=0.393 Sum_probs=19.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhh
Q 007691 272 AYSNLGKEVNNLRDEAIEIEKEISKAGD 299 (593)
Q Consensus 272 sy~~l~~~~ekl~~~t~~i~~ei~~~g~ 299 (593)
.++.+...+-.|++++..|++|+..+.+
T Consensus 65 ~LE~iqs~aK~LRnKA~~L~~eLe~F~~ 92 (96)
T 1t3j_A 65 QLEKMQNNSKLLRNKAVQLESELENFSK 92 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3455566667788888888887776443
No 32
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=37.48 E-value=3.4e+02 Score=29.53 Aligned_cols=29 Identities=7% Similarity=0.111 Sum_probs=13.7
Q ss_pred hhhhHHHHHHHhhhhhHHHHhhhHHHHHH
Q 007691 219 TAKGVRDLMDILSRHSEVVYNQSKEIAAS 247 (593)
Q Consensus 219 t~k~v~~~i~~l~~~s~~i~Eq~~eIa~s 247 (593)
....++..|+.|.+.+..+++-.+.|..+
T Consensus 96 dl~~Le~~l~~isn~Ts~a~~~v~~ik~s 124 (461)
T 3ghg_B 96 SVDELNNNVEAVSQTSSSSFQYMYLLKDL 124 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33344444444444455555555544444
No 33
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=35.73 E-value=2.2e+02 Score=33.85 Aligned_cols=41 Identities=20% Similarity=0.213 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 007691 261 KLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAM 301 (593)
Q Consensus 261 ~l~~g~a~~~esy~~l~~~~ekl~~~t~~i~~ei~~~g~~l 301 (593)
+.++-+..+.+....+-++++++..+..+++.++..+.+.|
T Consensus 981 ~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L 1021 (1080)
T 2dfs_A 981 NATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHET 1021 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666676777777777777777766666666654433
No 34
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=33.62 E-value=4.7e+02 Score=28.47 Aligned_cols=19 Identities=5% Similarity=-0.011 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 007691 278 KEVNNLRDEAIEIEKEISK 296 (593)
Q Consensus 278 ~~~ekl~~~t~~i~~ei~~ 296 (593)
..++++.|.|.++..-|..
T Consensus 102 ~~l~~isn~Ts~a~~~v~~ 120 (461)
T 3ghg_B 102 NNVEAVSQTSSSSFQYMYL 120 (461)
T ss_dssp HHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHhhhHHHHHHHHH
Confidence 3444444444444444444
No 35
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=32.92 E-value=2.5e+02 Score=24.65 Aligned_cols=55 Identities=20% Similarity=0.281 Sum_probs=26.5
Q ss_pred HHHHHHHhhhhHHHHHHHhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007691 212 RVQNVAQTAKGVRDLMDILSRHSEVVYNQSKEIAASQTELQEGQVRIKEKLDEGMATLIDAY 273 (593)
Q Consensus 212 Q~~~laet~k~v~~~i~~l~~~s~~i~Eq~~eIa~sQ~eL~e~q~~m~~~l~~g~a~~~esy 273 (593)
.++-....++-+...-.-|.+|++-+-. .|.+..|-..+|++.-+...+.+++-|
T Consensus 39 NtqaI~~NS~aiaanTr~lQqh~aRlns-------qQrQI~ENhkEMKq~aaqsaaLlsk~y 93 (114)
T 2xzr_A 39 NTQSIEKNSKAIAANTRTLQQHSARLDS-------QQRQINENHKEMKQIEDKIEEILSKIY 93 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhchHHHHHhHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444455555444444554443333 333444455556555555445555555
No 36
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=31.52 E-value=3.4e+02 Score=25.74 Aligned_cols=41 Identities=10% Similarity=0.199 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHhHHHHhhhhhhhcchhhhHHHHHHHHHh
Q 007691 179 DYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQT 219 (593)
Q Consensus 179 ~~a~~~Le~l~e~qe~Ll~~~~~~~dsL~s~~~Q~~~laet 219 (593)
.++.++|..-.+....+-+...+++.++..++.....|.+.
T Consensus 16 ~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~ 56 (168)
T 3o0z_A 16 EEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQER 56 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444333333333
No 37
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=30.54 E-value=3.7e+02 Score=25.86 Aligned_cols=103 Identities=15% Similarity=0.151 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHHHHHhHHHHhhhhhhhcchhhhHHHHHHHHHhhhhHHHHHHHhhhhhHHHHhhhHHHHHHHHHHHHHHH
Q 007691 177 SADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYNQSKEIAASQTELQEGQV 256 (593)
Q Consensus 177 sS~~a~~~Le~l~e~qe~Ll~~~~~~~dsL~s~~~Q~~~laet~k~v~~~i~~l~~~s~~i~Eq~~eIa~sQ~eL~e~q~ 256 (593)
....+..-|....+.+.+|...... .|...+.+...|......+..-++.+...-.. ++.+....+
T Consensus 25 ~~~~le~El~EFqesSrELE~ELE~---eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~----------~~~e~~~~~- 90 (189)
T 2v71_A 25 SFQEARDELVEFQEGSRELEAELEA---QLVQAEQRNRDLQADNQRLKYEVEALKEKLEH----------QYAQSYKQV- 90 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHH-
Confidence 3344455555666666666554433 44445555545544444444444443332211 111111111
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 007691 257 RIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISK 296 (593)
Q Consensus 257 ~m~~~l~~g~a~~~esy~~l~~~~ekl~~~t~~i~~ei~~ 296 (593)
.++.+-+..+.+....+.+.+-+|-+...++++..+.
T Consensus 91 ---~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~ 127 (189)
T 2v71_A 91 ---SVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRA 127 (189)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 1223334456666777777777788888888888777
No 38
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=30.15 E-value=82 Score=24.24 Aligned_cols=29 Identities=28% Similarity=0.521 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 007691 162 GFQYETERLVNELKKSADYTEHKLEIIEE 190 (593)
Q Consensus 162 ~fq~~TE~tVnkL~~sS~~a~~~Le~l~e 190 (593)
.||..|+..|+.|...-..+..+|+.++.
T Consensus 16 ~FQ~~v~~~l~~Lt~kL~~vt~rle~lEn 44 (47)
T 1aq5_A 16 KFQTKVEELINTLQQKLEAVAKRIEALEN 44 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 69999999999999998888888887754
No 39
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=29.03 E-value=1e+02 Score=24.06 Aligned_cols=42 Identities=24% Similarity=0.460 Sum_probs=27.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhhhh
Q 007691 272 AYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIGS 317 (593)
Q Consensus 272 sy~~l~~~~ekl~~~t~~i~~ei~~~g~~l~~~m~~lq~~a~~I~~ 317 (593)
+|.+|...+|.|+-|..-+.+|+++-.. .+.-|.+-+.+|..
T Consensus 4 sYdQL~~QVe~Lk~ENshLrrEL~dNS~----~lskLE~ets~mKe 45 (54)
T 1deb_A 4 SYDQLLKQVEALKMENSNLRQELEDNSN----HLTKLETEASNMKE 45 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHhhHH----HHHHHHhhhhhHHH
Confidence 5778888888888888888888877333 33344444555443
No 40
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=28.74 E-value=5.1e+02 Score=26.81 Aligned_cols=20 Identities=15% Similarity=0.267 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHhhhhhhh
Q 007691 283 LRDEAIEIEKEISKAGDAMF 302 (593)
Q Consensus 283 l~~~t~~i~~ei~~~g~~l~ 302 (593)
.++.+..|+++|..+...++
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~ 414 (471)
T 3mq9_A 395 ARNVTHLLQQELTEAQKGFQ 414 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhhhHH
Confidence 44555556666666555544
No 41
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=26.44 E-value=2.4e+02 Score=22.33 Aligned_cols=17 Identities=6% Similarity=0.102 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q 007691 280 VNNLRDEAIEIEKEISK 296 (593)
Q Consensus 280 ~ekl~~~t~~i~~ei~~ 296 (593)
+.+..+...+|...+..
T Consensus 65 ~~~~~~~L~~i~~~L~~ 81 (93)
T 4ioe_A 65 MQQYIPILEGISTDLKR 81 (93)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333334433
No 42
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.39 E-value=3.5e+02 Score=23.89 Aligned_cols=9 Identities=0% Similarity=0.184 Sum_probs=4.0
Q ss_pred HHHHHhHHH
Q 007691 349 EALAESRNT 357 (593)
Q Consensus 349 ~aleesr~t 357 (593)
.|.|..|++
T Consensus 113 ~~aekek~~ 121 (130)
T 2dnx_A 113 RVSEKEKES 121 (130)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 344444443
No 43
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=24.98 E-value=4.6e+02 Score=25.09 Aligned_cols=81 Identities=9% Similarity=-0.013 Sum_probs=57.7
Q ss_pred HHHhhhhHHHHHHHhhhhhHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 007691 216 VAQTAKGVRDLMDILSRHSEVVYNQS-KEIAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEI 294 (593)
Q Consensus 216 laet~k~v~~~i~~l~~~s~~i~Eq~-~eIa~sQ~eL~e~q~~m~~~l~~g~a~~~esy~~l~~~~ekl~~~t~~i~~ei 294 (593)
+..++..+...++.+.+.+..+-+.. .++..--..+.+.+.+.+.++.+.+.++...+....+.++|.+..-....++.
T Consensus 74 ~~~aw~~~~~~~e~~a~~h~~~a~~l~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~~~e~ 153 (305)
T 2efl_A 74 SCKAFISNLNEMNDYAGQHEVISENMASQIIVDLARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEA 153 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666665 55666666777777778888888888888888888888888888666666665
Q ss_pred Hh
Q 007691 295 SK 296 (593)
Q Consensus 295 ~~ 296 (593)
..
T Consensus 154 e~ 155 (305)
T 2efl_A 154 DR 155 (305)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 44
>2qih_A Protein USPA1; trimeric, parallel alpha-helical coiled-coil, cell adhesion; 1.90A {Moraxella catarrhalis}
Probab=24.37 E-value=4.3e+02 Score=24.55 Aligned_cols=53 Identities=17% Similarity=0.211 Sum_probs=36.9
Q ss_pred hhhhhhhhcchHHHHHHhhchhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhchH
Q 007691 313 DNIGSMAGDSLDKQQQLLHGQSTALESLQLLTKFQSEALAESRNTLQELAEYGHKQQEELLKRQEQLQEVHDHLFKNSR 391 (593)
Q Consensus 313 ~~I~~~~~~SLenQ~~LL~gQ~~a~~~L~~l~~~q~~aleesr~t~q~la~~~~~qqeell~~q~ql~~~h~~l~~~s~ 391 (593)
.+|++--+.=.+||..+++.|+.--.+.+.+++ || +.|.|-..-++.|.+||.
T Consensus 75 RdIgsL~ddVa~NqaDIakNqADIdNNinnIYE---------------LA-----------QQQDQHSSDIKTLkKnS~ 127 (157)
T 2qih_A 75 RAVGNNTQGVATNKADIAKNQADIANNIKNIYE---------------LA-----------QQQDQHSSDIKTLAKVSA 127 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HH-----------HHHHHHHHHHHHHHHHHH
T ss_pred hhhcchhhHHHhhHHHHHHhHHHHHhhHHHHHH---------------HH-----------HHHHHhHHHHHHHHhcch
Confidence 355555556677888899888877777778887 33 336666677777766664
No 45
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=23.16 E-value=3.9e+02 Score=23.60 Aligned_cols=67 Identities=12% Similarity=0.258 Sum_probs=29.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHH
Q 007691 237 VYNQSKEIAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQ 307 (593)
Q Consensus 237 i~Eq~~eIa~sQ~eL~e~q~~m~~~l~~g~a~~~esy~~l~~~~ekl~~~t~~i~~ei~~~g~~l~~~m~~ 307 (593)
|.|.-+.|..-+.++ +.+..++..++..++-...-|.. +++..+..-.+++.++..+...|...+..
T Consensus 40 i~elrr~iq~L~~el-~~l~~~~~sLE~~l~e~e~~~~~---~l~~~q~~i~~lE~eL~~~r~em~~ql~E 106 (131)
T 3tnu_A 40 ISELRRTMQNLEIEL-QSQLSMKASLENSLEETKGRYCM---QLAQIQEMIGSVEEQLAQLRCEMEQQNQE 106 (131)
T ss_dssp -CHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444 23344555555555555444422 22333333334555555544444433333
Done!