BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007693
(593 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 90/317 (28%), Positives = 154/317 (48%), Gaps = 54/317 (17%)
Query: 155 DGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSN-RGAAVLKMFPR 213
DG+ L+ NL+ ++ +TD+ L+ LTKL + + +Q+++ A L
Sbjct: 57 DGVEYLN---NLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITPLANLTNLTG 111
Query: 214 LSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAF 273
L+ N T + L N+++L L LS+ TI I +L+G T + +
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDI------------SALSGLTSLQQ---- 155
Query: 274 LYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNL 333
LSF S++ ++ L + LE LD+SS+ + D SV +A + NL +L
Sbjct: 156 -------LSF---SSNQVTDLKPLANLTTLERLDISSNKVSDISV--LAKL-TNLESLIA 202
Query: 334 SNTRFSS-AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQ 392
+N + S +GIL NL+ LSL+G Q+ D I ++ + +L +D++N I
Sbjct: 203 TNNQISDITPLGILT----NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP 256
Query: 393 QVGAE--TDLVL------SLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRN 444
G T+L L +++ L L L L L + Q+ D + P+S K L +L+L
Sbjct: 257 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYF 314
Query: 445 ASLTDVSLHQLSSLSKL 461
+++D+S +SSL+KL
Sbjct: 315 NNISDIS--PVSSLTKL 329
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 81/151 (53%), Gaps = 9/151 (5%)
Query: 86 LGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKL 145
+ + L +LN + T S + AL+G+T L++L S +VTD +K L +++TLE+L
Sbjct: 122 IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSN-QVTD--LKPLANLTTLERL 178
Query: 146 WLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGA 205
+S ++ I++L+ L NL L ++D+ L +LT L+ L L G+Q+ + G
Sbjct: 179 DISSNKVS--DISVLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLKDIGT 234
Query: 206 AVLKMFPRLSFLNLAWTGVTKLPNISSLECL 236
L L+ L+LA ++ L +S L L
Sbjct: 235 --LASLTNLTDLDLANNQISNLAPLSGLTKL 263
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 91/213 (42%), Gaps = 44/213 (20%)
Query: 281 LSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS 340
L+ ++ SN+ L+ L + L + ++++ I D + +A + NL L L N + +
Sbjct: 65 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD--ITPLANL-TNLTGLTLFNNQITD 121
Query: 341 AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDL 400
+L NL L LS I D IS +S + SL QQ+ ++
Sbjct: 122 IDP---LKNLTNLNRLELSSNTISD--ISALSGLTSL--------------QQLSFSSNQ 162
Query: 401 VLSLTALQNLNHLERLNLEQTQVSDATLF--------------------PLSTFKELIHL 440
V L L NL LERL++ +VSD ++ PL L L
Sbjct: 163 VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDEL 222
Query: 441 SLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 473
SL L D+ L+SL+ LT+L + + ++N
Sbjct: 223 SLNGNQLKDIG--TLASLTNLTDLDLANNQISN 253
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 88/317 (27%), Positives = 153/317 (48%), Gaps = 54/317 (17%)
Query: 155 DGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSN-RGAAVLKMFPR 213
DG+ L+ NL+ ++ +TD+ L+ LTKL + + +Q+++ A L
Sbjct: 57 DGVEYLN---NLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITPLANLTNLTG 111
Query: 214 LSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAF 273
L+ N T + L N+++L L LS+ TI I +L+G T + +
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDI------------SALSGLTSLQQ---- 155
Query: 274 LYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNL 333
L+ S++ ++ L + LE LD+SS+ + D SV +A + NL +L
Sbjct: 156 ----------LNFSSNQVTDLKPLANLTTLERLDISSNKVSDISV--LAKL-TNLESLIA 202
Query: 334 SNTRFSS-AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQ 392
+N + S +GIL NL+ LSL+G Q+ D I ++ + +L +D++N I
Sbjct: 203 TNNQISDITPLGILT----NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP 256
Query: 393 QVGAE--TDLVL------SLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRN 444
G T+L L +++ L L L L L + Q+ D + P+S K L +L+L
Sbjct: 257 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYF 314
Query: 445 ASLTDVSLHQLSSLSKL 461
+++D+S +SSL+KL
Sbjct: 315 NNISDIS--PVSSLTKL 329
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 82/151 (54%), Gaps = 9/151 (5%)
Query: 86 LGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKL 145
+ + L +LN + T S + AL+G+T L++L+ S +VTD +K L +++TLE+L
Sbjct: 122 IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSN-QVTD--LKPLANLTTLERL 178
Query: 146 WLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGA 205
+S ++ I++L+ L NL L ++D+ L +LT L+ L L G+Q+ + G
Sbjct: 179 DISSNKVS--DISVLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLKDIGT 234
Query: 206 AVLKMFPRLSFLNLAWTGVTKLPNISSLECL 236
L L+ L+LA ++ L +S L L
Sbjct: 235 --LASLTNLTDLDLANNQISNLAPLSGLTKL 263
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 91/213 (42%), Gaps = 44/213 (20%)
Query: 281 LSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS 340
L+ ++ SN+ L+ L + L + ++++ I D + +A + NL L L N + +
Sbjct: 65 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD--ITPLANL-TNLTGLTLFNNQITD 121
Query: 341 AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDL 400
+L NL L LS I D IS +S + SL QQ+ ++
Sbjct: 122 IDP---LKNLTNLNRLELSSNTISD--ISALSGLTSL--------------QQLNFSSNQ 162
Query: 401 VLSLTALQNLNHLERLNLEQTQVSDATLF--------------------PLSTFKELIHL 440
V L L NL LERL++ +VSD ++ PL L L
Sbjct: 163 VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDEL 222
Query: 441 SLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 473
SL L D+ L+SL+ LT+L + + ++N
Sbjct: 223 SLNGNQLKDIG--TLASLTNLTDLDLANNQISN 253
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 94/325 (28%), Positives = 153/325 (47%), Gaps = 56/325 (17%)
Query: 171 LGGLPVTDLVLRS-LQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN 229
LG VTD V ++ L +T L+ D G + S G L +++F N T +T L N
Sbjct: 31 LGKTNVTDTVSQTDLDQVTTLQA-DRLGIK-SIDGVEYLNNLTQINFSNNQLTDITPLKN 88
Query: 230 ISSLECLNLSNCTIDSILEGNENKAPLAKIS-LAGTTFINEREAFL----------YIET 278
++ L + ++N I I PLA ++ L G T N + + +E
Sbjct: 89 LTKLVDILMNNNQIADI-------TPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 141
Query: 279 SLLSFLDVSN----SSLSRFCF---------LTQMKALEHLDLSSSMIGDDSVEMVACVG 325
S + D+S +SL + F L + LE LD+SS+ + D SV +A +
Sbjct: 142 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV--LAKL- 198
Query: 326 ANLRNLNLSNTRFSS-AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN 384
NL +L +N + S +GIL NL+ LSL+G Q+ D I ++ + +L +D++N
Sbjct: 199 TNLESLIATNNQISDITPLGILT----NLDELSLNGNQLKD--IGTLASLTNLTDLDLAN 252
Query: 385 TDIKGFIQQVGAE--TDLVL------SLTALQNLNHLERLNLEQTQVSDATLFPLSTFKE 436
I G T+L L +++ L L L L L + Q+ D + P+S K
Sbjct: 253 NQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED--ISPISNLKN 310
Query: 437 LIHLSLRNASLTDVSLHQLSSLSKL 461
L +L+L +++D+S +SSL+KL
Sbjct: 311 LTYLTLYFNNISDIS--PVSSLTKL 333
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 79/148 (53%), Gaps = 10/148 (6%)
Query: 89 FRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLS 148
+ L +LN + T S + AL+G+T L++L +VTD +K L +++TLE+L +S
Sbjct: 130 LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGN--QVTD--LKPLANLTTLERLDIS 185
Query: 149 ETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVL 208
++ I++L+ L NL L ++D+ L +LT L+ L L G+Q+ + G L
Sbjct: 186 SNKVS--DISVLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLKDIGT--L 239
Query: 209 KMFPRLSFLNLAWTGVTKLPNISSLECL 236
L+ L+LA ++ L +S L L
Sbjct: 240 ASLTNLTDLDLANNQISNLAPLSGLTKL 267
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 89/213 (41%), Gaps = 45/213 (21%)
Query: 281 LSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS 340
L+ ++ SN+ L+ L + L + ++++ I D + +A + NL L L N + +
Sbjct: 70 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD--ITPLANL-TNLTGLTLFNNQITD 126
Query: 341 AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDL 400
+L NL L LS I D IS +S + SL+ + N
Sbjct: 127 IDP---LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQ--------------- 166
Query: 401 VLSLTALQNLNHLERLNLEQTQVSDATLF--------------------PLSTFKELIHL 440
V L L NL LERL++ +VSD ++ PL L L
Sbjct: 167 VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDEL 226
Query: 441 SLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 473
SL L D+ L+SL+ LT+L + + ++N
Sbjct: 227 SLNGNQLKDIG--TLASLTNLTDLDLANNQISN 257
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 90/317 (28%), Positives = 154/317 (48%), Gaps = 54/317 (17%)
Query: 155 DGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSN-RGAAVLKMFPR 213
DG+ L+ NL+ ++ +TD+ L+ LTKL + + +Q+++ A L
Sbjct: 57 DGVEYLN---NLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITPLANLTNLTG 111
Query: 214 LSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAF 273
L+ N T + L N+++L L LS+ TI I +L+G T + +
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDI------------SALSGLTSLQQ---- 155
Query: 274 LYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNL 333
LSF S++ ++ L + LE LD+SS+ + D SV +A + NL +L
Sbjct: 156 -------LSF---SSNQVTDLKPLANLTTLERLDISSNKVSDISV--LAKL-TNLESLIA 202
Query: 334 SNTRFSS-AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQ 392
+N + S +GIL NL+ LSL+G Q+ D I ++ + +L +D++N I
Sbjct: 203 TNNQISDITPLGILT----NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP 256
Query: 393 QVGAE--TDLVL------SLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRN 444
G T+L L +++ L L L L L + Q+ D + P+S K L +L+L
Sbjct: 257 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYF 314
Query: 445 ASLTDVSLHQLSSLSKL 461
+++D+S +SSL+KL
Sbjct: 315 NNISDIS--PVSSLTKL 329
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 80/148 (54%), Gaps = 9/148 (6%)
Query: 89 FRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLS 148
+ L +LN + T S + AL+G+T L++L S +VTD +K L +++TLE+L +S
Sbjct: 125 LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSN-QVTD--LKPLANLTTLERLDIS 181
Query: 149 ETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVL 208
++ I++L+ L NL L ++D+ L +LT L+ L L G+Q+ + G L
Sbjct: 182 SNKVS--DISVLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLKDIGT--L 235
Query: 209 KMFPRLSFLNLAWTGVTKLPNISSLECL 236
L+ L+LA ++ L +S L L
Sbjct: 236 ASLTNLTDLDLANNQISNLAPLSGLTKL 263
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 91/213 (42%), Gaps = 44/213 (20%)
Query: 281 LSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS 340
L+ ++ SN+ L+ L + L + ++++ I D + +A + NL L L N + +
Sbjct: 65 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD--ITPLANL-TNLTGLTLFNNQITD 121
Query: 341 AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDL 400
+L NL L LS I D IS +S + SL QQ+ ++
Sbjct: 122 IDP---LKNLTNLNRLELSSNTISD--ISALSGLTSL--------------QQLSFSSNQ 162
Query: 401 VLSLTALQNLNHLERLNLEQTQVSDATLF--------------------PLSTFKELIHL 440
V L L NL LERL++ +VSD ++ PL L L
Sbjct: 163 VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDEL 222
Query: 441 SLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 473
SL L D+ L+SL+ LT+L + + ++N
Sbjct: 223 SLNGNQLKDIG--TLASLTNLTDLDLANNQISN 253
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 94/325 (28%), Positives = 153/325 (47%), Gaps = 56/325 (17%)
Query: 171 LGGLPVTDLVLRS-LQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN 229
LG VTD V ++ L +T L+ D G + S G L +++F N T +T L N
Sbjct: 30 LGKTNVTDTVSQTDLDQVTTLQA-DRLGIK-SIDGVEYLNNLTQINFSNNQLTDITPLKN 87
Query: 230 ISSLECLNLSNCTIDSILEGNENKAPLAKIS-LAGTTFINEREAFL----------YIET 278
++ L + ++N I I PLA ++ L G T N + + +E
Sbjct: 88 LTKLVDILMNNNQIADI-------TPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 140
Query: 279 SLLSFLDVSN----SSLSRFCF---------LTQMKALEHLDLSSSMIGDDSVEMVACVG 325
S + D+S +SL + F L + LE LD+SS+ + D SV +A +
Sbjct: 141 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV--LAKL- 197
Query: 326 ANLRNLNLSNTRFSS-AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN 384
NL +L +N + S +GIL NL+ LSL+G Q+ D I ++ + +L +D++N
Sbjct: 198 TNLESLIATNNQISDITPLGILT----NLDELSLNGNQLKD--IGTLASLTNLTDLDLAN 251
Query: 385 TDIKGFIQQVGAE--TDLVL------SLTALQNLNHLERLNLEQTQVSDATLFPLSTFKE 436
I G T+L L +++ L L L L L + Q+ D + P+S K
Sbjct: 252 NQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED--ISPISNLKN 309
Query: 437 LIHLSLRNASLTDVSLHQLSSLSKL 461
L +L+L +++D+S +SSL+KL
Sbjct: 310 LTYLTLYFNNISDIS--PVSSLTKL 332
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 79/148 (53%), Gaps = 10/148 (6%)
Query: 89 FRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLS 148
+ L +LN + T S + AL+G+T L++L +VTD +K L +++TLE+L +S
Sbjct: 129 LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGN--QVTD--LKPLANLTTLERLDIS 184
Query: 149 ETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVL 208
++ I++L+ L NL L ++D+ L +LT L+ L L G+Q+ + G L
Sbjct: 185 SNKVS--DISVLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLKDIGT--L 238
Query: 209 KMFPRLSFLNLAWTGVTKLPNISSLECL 236
L+ L+LA ++ L +S L L
Sbjct: 239 ASLTNLTDLDLANNQISNLAPLSGLTKL 266
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 89/213 (41%), Gaps = 45/213 (21%)
Query: 281 LSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS 340
L+ ++ SN+ L+ L + L + ++++ I D + +A + NL L L N + +
Sbjct: 69 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD--ITPLANL-TNLTGLTLFNNQITD 125
Query: 341 AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDL 400
+L NL L LS I D IS +S + SL+ + N
Sbjct: 126 IDP---LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQ--------------- 165
Query: 401 VLSLTALQNLNHLERLNLEQTQVSDATLF--------------------PLSTFKELIHL 440
V L L NL LERL++ +VSD ++ PL L L
Sbjct: 166 VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDEL 225
Query: 441 SLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 473
SL L D+ L+SL+ LT+L + + ++N
Sbjct: 226 SLNGNQLKDIG--TLASLTNLTDLDLANNQISN 256
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 94/325 (28%), Positives = 153/325 (47%), Gaps = 56/325 (17%)
Query: 171 LGGLPVTDLVLRS-LQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN 229
LG VTD V ++ L +T L+ D G + S G L +++F N T +T L N
Sbjct: 26 LGKTNVTDTVSQTDLDQVTTLQA-DRLGIK-SIDGVEYLNNLTQINFSNNQLTDITPLKN 83
Query: 230 ISSLECLNLSNCTIDSILEGNENKAPLAKIS-LAGTTFINEREAFL----------YIET 278
++ L + ++N I I PLA ++ L G T N + + +E
Sbjct: 84 LTKLVDILMNNNQIADI-------TPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 136
Query: 279 SLLSFLDVSN----SSLSRFCF---------LTQMKALEHLDLSSSMIGDDSVEMVACVG 325
S + D+S +SL + F L + LE LD+SS+ + D SV +A +
Sbjct: 137 SSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDISV--LAKL- 193
Query: 326 ANLRNLNLSNTRFSS-AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN 384
NL +L +N + S +GIL NL+ LSL+G Q+ D I ++ + +L +D++N
Sbjct: 194 TNLESLIATNNQISDITPLGILT----NLDELSLNGNQLKD--IGTLASLTNLTDLDLAN 247
Query: 385 TDIKGFIQQVGAE--TDLVL------SLTALQNLNHLERLNLEQTQVSDATLFPLSTFKE 436
I G T+L L +++ L L L L L + Q+ D + P+S K
Sbjct: 248 NQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED--ISPISNLKN 305
Query: 437 LIHLSLRNASLTDVSLHQLSSLSKL 461
L +L+L +++D+S +SSL+KL
Sbjct: 306 LTYLTLYFNNISDIS--PVSSLTKL 328
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 80/148 (54%), Gaps = 10/148 (6%)
Query: 89 FRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLS 148
+ L +LN + T S + AL+G+T L++L+ +VTD +K L +++TLE+L +S
Sbjct: 125 LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGN--QVTD--LKPLANLTTLERLDIS 180
Query: 149 ETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVL 208
++ I++L+ L NL L ++D+ L +LT L+ L L G+Q+ + G L
Sbjct: 181 SNKVS--DISVLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLKDIGT--L 234
Query: 209 KMFPRLSFLNLAWTGVTKLPNISSLECL 236
L+ L+LA ++ L +S L L
Sbjct: 235 ASLTNLTDLDLANNQISNLAPLSGLTKL 262
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 90/213 (42%), Gaps = 45/213 (21%)
Query: 281 LSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS 340
L+ ++ SN+ L+ L + L + ++++ I D + +A + NL L L N + +
Sbjct: 65 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD--ITPLANL-TNLTGLTLFNNQITD 121
Query: 341 AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDL 400
+L NL L LS I D IS +S + SL+ ++ N
Sbjct: 122 IDP---LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFGNQ--------------- 161
Query: 401 VLSLTALQNLNHLERLNLEQTQVSDATLF--------------------PLSTFKELIHL 440
V L L NL LERL++ +VSD ++ PL L L
Sbjct: 162 VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDEL 221
Query: 441 SLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 473
SL L D+ L+SL+ LT+L + + ++N
Sbjct: 222 SLNGNQLKDIG--TLASLTNLTDLDLANNQISN 252
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 94/325 (28%), Positives = 153/325 (47%), Gaps = 56/325 (17%)
Query: 171 LGGLPVTDLVLRS-LQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN 229
LG VTD V ++ L +T L+ D G + S G L +++F N T +T L N
Sbjct: 26 LGKTNVTDTVSQTDLDQVTTLQA-DRLGIK-SIDGVEYLNNLTQINFSNNQLTDITPLKN 83
Query: 230 ISSLECLNLSNCTIDSILEGNENKAPLAKIS-LAGTTFINEREAFL----------YIET 278
++ L + ++N I I PLA ++ L G T N + + +E
Sbjct: 84 LTKLVDILMNNNQIADI-------TPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 136
Query: 279 SLLSFLDVSN----SSLSRFCF---------LTQMKALEHLDLSSSMIGDDSVEMVACVG 325
S + D+S +SL + F L + LE LD+SS+ + D SV +A +
Sbjct: 137 SSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDISV--LAKL- 193
Query: 326 ANLRNLNLSNTRFSS-AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN 384
NL +L +N + S +GIL NL+ LSL+G Q+ D I ++ + +L +D++N
Sbjct: 194 TNLESLIATNNQISDITPLGILT----NLDELSLNGNQLKD--IGTLASLTNLTDLDLAN 247
Query: 385 TDIKGFIQQVGAE--TDLVL------SLTALQNLNHLERLNLEQTQVSDATLFPLSTFKE 436
I G T+L L +++ L L L L L + Q+ D + P+S K
Sbjct: 248 NQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED--ISPISNLKN 305
Query: 437 LIHLSLRNASLTDVSLHQLSSLSKL 461
L +L+L +++D+S +SSL+KL
Sbjct: 306 LTYLTLYFNNISDIS--PVSSLTKL 328
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 80/148 (54%), Gaps = 10/148 (6%)
Query: 89 FRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLS 148
+ L +LN + T S + AL+G+T L++L+ +VTD +K L +++TLE+L +S
Sbjct: 125 LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGN--QVTD--LKPLANLTTLERLDIS 180
Query: 149 ETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVL 208
++ I++L+ L NL L ++D+ L +LT L+ L L G+Q+ + G L
Sbjct: 181 SNKVS--DISVLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLKDIGT--L 234
Query: 209 KMFPRLSFLNLAWTGVTKLPNISSLECL 236
L+ L+LA ++ L +S L L
Sbjct: 235 ASLTNLTDLDLANNQISNLAPLSGLTKL 262
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 90/213 (42%), Gaps = 45/213 (21%)
Query: 281 LSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS 340
L+ ++ SN+ L+ L + L + ++++ I D + +A + NL L L N + +
Sbjct: 65 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD--ITPLANL-TNLTGLTLFNNQITD 121
Query: 341 AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDL 400
+L NL L LS I D IS +S + SL+ ++ N
Sbjct: 122 IDP---LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFGNQ--------------- 161
Query: 401 VLSLTALQNLNHLERLNLEQTQVSDATLF--------------------PLSTFKELIHL 440
V L L NL LERL++ +VSD ++ PL L L
Sbjct: 162 VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDEL 221
Query: 441 SLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 473
SL L D+ L+SL+ LT+L + + ++N
Sbjct: 222 SLNGNQLKDIG--TLASLTNLTDLDLANNQISN 252
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 88/183 (48%), Gaps = 19/183 (10%)
Query: 156 GIALLSSLQNLSVLDLG--GLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPR 213
G L +L+NL LDL + +D L+ L+ L+ L+L ++ + K P+
Sbjct: 342 GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ 401
Query: 214 LSFLNLAWTGV------TKLPNISSLECLNLSNCTIDSILEGNENKAP-LAKISLAGTTF 266
L L+LA+T + + N+ L+ LNLS+ +D E + P L ++L G F
Sbjct: 402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461
Query: 267 -------INEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVE 319
N + +E +LSF D+S S+ + F T +K + H+DLS + + S+E
Sbjct: 462 PKGNIQKTNSLQTLGRLEILVLSFCDLS--SIDQHAF-TSLKMMNHVDLSHNRLTSSSIE 518
Query: 320 MVA 322
++
Sbjct: 519 ALS 521
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 100/190 (52%), Gaps = 26/190 (13%)
Query: 284 LDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGV 343
L++ ++ ++ L + + L+LS + + + V +A + + ++ L+L++T+ + V
Sbjct: 68 LELKDNQITDLAPLKNLTKITELELSGNPLKN--VSAIAGLQS-IKTLDLTSTQITD--V 122
Query: 344 GILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLS 403
LAG L NL++L L QI + IS ++ + +L+++ I N +
Sbjct: 123 TPLAG-LSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVS--------------D 165
Query: 404 LTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTN 463
LT L NL+ L L + ++SD + PL++ LI + L+N ++DVS L++ S L
Sbjct: 166 LTPLANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDVS--PLANTSNLFI 221
Query: 464 LSIRDAVLTN 473
+++ + +TN
Sbjct: 222 VTLTNQTITN 231
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 79/163 (48%), Gaps = 26/163 (15%)
Query: 98 ADCRRVTSSALWALTGMTCLKELD-LSRCV-------KVTD-AGMKHLLSISTLEKLWLS 148
AD +T+ + + TG+T ++ + L+ + ++TD A +K+L I+ LE
Sbjct: 38 ADLDGITTLSAFG-TGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELEL---- 92
Query: 149 ETGLTADGIALLSSLQNLSVLDLGGLPVTDLV----LRSLQVLTKLEYLDLWGSQVSNRG 204
+G ++ ++ LQ++ LDL +TD+ L +LQVL YLDL +Q++N
Sbjct: 93 -SGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL----YLDL--NQITNIS 145
Query: 205 A-AVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSI 246
A L LS N + +T L N+S L L + I I
Sbjct: 146 PLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDI 188
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 89/379 (23%), Positives = 155/379 (40%), Gaps = 58/379 (15%)
Query: 87 GAFRYLRS-----LNVADCRRVTSSALWALTGMTCLK--------ELDLSRCVKVTDAGM 133
GAF+ +R N D V + + L G+ + E +L + K G+
Sbjct: 219 GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 278
Query: 134 KHLLSISTLEKLWLSETGLTADGIA-LLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEY 192
+L T+E+ L+ DGI L + L N+S L + VT ++ ++
Sbjct: 279 CNL----TIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSL--VSVTIERVKDFSYNFGWQH 332
Query: 193 LDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNEN 252
L+L + LK RL+F + ++ SLE L+LS + +G +
Sbjct: 333 LELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLS--FKGCCS 390
Query: 253 KAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSM 312
++ ISL Y++ S + +S++ L ++ LEHLD S
Sbjct: 391 QSDFGTISLK------------YLDLSFNGVITMSSNFLG-------LEQLEHLDFQHSN 431
Query: 313 IGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQI-DDYAISYM 371
+ S V NL L++S+T A GI G L +LE+L ++G +++
Sbjct: 432 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-LSSLEVLKMAGNSFQENFLPDIF 490
Query: 372 SMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPL 431
+ + +L F+D+S ++ LS TA +L+ L+ LN+ FP
Sbjct: 491 TELRNLTFLDLSQCQLEQ------------LSPTAFNSLSSLQVLNMSHNNFFSLDTFP- 537
Query: 432 STFKELIHLSLRNASLTDV 450
+K L L + + SL +
Sbjct: 538 --YKCLNSLQVLDYSLNHI 554
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 95/183 (51%), Gaps = 29/183 (15%)
Query: 284 LDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGV 343
L++ ++ ++ L + + L+LS + + + V +A + + ++ L+L++T+ + V
Sbjct: 74 LELKDNQITDLTPLKNLTKITELELSGNPLKN--VSAIAGLQS-IKTLDLTSTQITD--V 128
Query: 344 GILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLS 403
LAG L NL++L L QI + IS ++ + +L+++ I N +
Sbjct: 129 TPLAG-LSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNNQVN--------------D 171
Query: 404 LTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTN 463
LT L NL+ L L + ++SD + PL++ LI + L++ ++DV S L+ L+N
Sbjct: 172 LTPLANLSKLTTLRADDNKISD--ISPLASLPNLIEVHLKDNQISDV-----SPLANLSN 224
Query: 464 LSI 466
L I
Sbjct: 225 LFI 227
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 17/116 (14%)
Query: 127 KVTD-AGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLV----L 181
++TD +K+L I+ LE +G ++ ++ LQ++ LDL +TD+ L
Sbjct: 80 QITDLTPLKNLTKITELEL-----SGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGL 134
Query: 182 RSLQVLTKLEYLDLWGSQVSNRGA-AVLKMFPRLSFLNLAWTGVTKLPNISSLECL 236
+LQVL YLDL +Q++N A L LS N +T L N+S L L
Sbjct: 135 SNLQVL----YLDL--NQITNISPLAGLTNLQYLSIGNNQVNDLTPLANLSKLTTL 184
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 69/297 (23%), Positives = 132/297 (44%), Gaps = 43/297 (14%)
Query: 140 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQ 199
+ ++ L LS +T G L + NL VL L + + + L LE+LDL +
Sbjct: 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85
Query: 200 VSNRGAAVLKMFPRLSFLNLAWT-----GVTKL-PNISSLECLNLSNCTIDSILEGNENK 253
+S+ ++ L +LNL GVT L PN+++L+ L + N E
Sbjct: 86 LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV---------ETF 136
Query: 254 APLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDL---SS 310
+ + +I AG T +NE +E LS + + SL ++ + HL L S
Sbjct: 137 SEIRRIDFAGLTSLNE------LEIKALSLRNYQSQSLK------SIRDIHHLTLHLSES 184
Query: 311 SMIGDDSVEMVACVGA-NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAIS 369
+ + + ++++ V LR+ NL+ +FS V ++ + L+ G+ + D S
Sbjct: 185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK---LAFRGSVLTDE--S 239
Query: 370 YMSMMPSLKFI------DISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQ 420
+ ++ L++I + + + G +E+D+V L ++ + + RL++ Q
Sbjct: 240 FNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVT-IRRLHIPQ 295
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 87/179 (48%), Gaps = 18/179 (10%)
Query: 296 FLTQMKALEHLDLSSSMIGDDSVEMVACVGA--NLRNLNLSNTRFSS-AGVGILAGHLPN 352
F +K+LE LDLS +++ ++ ++ AC GA +L+ L LS S G + L N
Sbjct: 329 FSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN 388
Query: 353 LEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLN- 411
L L +S S ++F+++S+T I+ ++ +T VL ++ NL+
Sbjct: 389 LTSLDISRNTFHPMPDS-CQWPEKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSN-NNLDS 445
Query: 412 ------HLERLNLEQTQVS---DATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKL 461
L+ L + + ++ DA+LFP+ ++ L+ S+ D +L+SL K+
Sbjct: 446 FSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLK--SVPDGIFDRLTSLQKI 502
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 69/297 (23%), Positives = 132/297 (44%), Gaps = 43/297 (14%)
Query: 140 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQ 199
+ ++ L LS +T G L + NL VL L + + + L LE+LDL +
Sbjct: 52 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 111
Query: 200 VSNRGAAVLKMFPRLSFLNLAWT-----GVTKL-PNISSLECLNLSNCTIDSILEGNENK 253
+S+ ++ L +LNL GVT L PN+++L+ L + N E
Sbjct: 112 LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV---------ETF 162
Query: 254 APLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDL---SS 310
+ + +I AG T +NE +E LS + + SL ++ + HL L S
Sbjct: 163 SEIRRIDFAGLTSLNE------LEIKALSLRNYQSQSLK------SIRDIHHLTLHLSES 210
Query: 311 SMIGDDSVEMVACVGA-NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAIS 369
+ + + ++++ V LR+ NL+ +FS V ++ + L+ G+ + D S
Sbjct: 211 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK---LAFRGSVLTDE--S 265
Query: 370 YMSMMPSLKFI------DISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQ 420
+ ++ L++I + + + G +E+D+V L ++ + + RL++ Q
Sbjct: 266 FNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVT-IRRLHIPQ 321
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 87/179 (48%), Gaps = 18/179 (10%)
Query: 296 FLTQMKALEHLDLSSSMIGDDSVEMVACVGA--NLRNLNLSNTRFSS-AGVGILAGHLPN 352
F +K+LE LDLS +++ ++ ++ AC GA +L+ L LS S G + L N
Sbjct: 355 FSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN 414
Query: 353 LEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLN- 411
L L +S S ++F+++S+T I+ ++ +T VL ++ NL+
Sbjct: 415 LTSLDISRNTFHPMPDS-CQWPEKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSN-NNLDS 471
Query: 412 ------HLERLNLEQTQVS---DATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKL 461
L+ L + + ++ DA+LFP+ ++ L+ S+ D +L+SL K+
Sbjct: 472 FSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKIASNQLK--SVPDGIFDRLTSLQKI 528
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 303 LEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTR-FSSAGVGILAGHLPNLEILSLSGT 361
LE + L ++ DD +E++A N + L LS+ FS+ G+ +A NL+ L L +
Sbjct: 107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRES 166
Query: 362 QIDDYAISYMSMMP 375
+DD + ++S P
Sbjct: 167 DVDDVSGHWLSHFP 180
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 15/162 (9%)
Query: 278 TSLLSFLDVS-NSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNT 336
T+ L +LD+S N ++ ++ LEHLD S + S V NL L++S+T
Sbjct: 372 TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431
Query: 337 RFSSAGVGILAGHLPNLEILSLSGTQI-DDYAISYMSMMPSLKFIDISNTDIKGFIQQVG 395
A GI G L +LE+L ++G +++ + + +L F+D+S ++
Sbjct: 432 HTRVAFNGIFNG-LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ------ 484
Query: 396 AETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKEL 437
LS TA +L+ L+ LN+ FP L
Sbjct: 485 ------LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 520
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 80/175 (45%), Gaps = 18/175 (10%)
Query: 278 TSLLSFLDVS-NSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNT 336
T+ L +LD+S N ++ ++ LEHLD S + S V NL L++S+T
Sbjct: 77 TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 136
Query: 337 RFSSAGVGILAGHLPNLEILSLSGTQI-DDYAISYMSMMPSLKFIDISNTDIKGFIQQVG 395
A GI G L +LE+L ++G +++ + + +L F+D+S ++
Sbjct: 137 HTRVAFNGIFNG-LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ------ 189
Query: 396 AETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDV 450
LS TA +L+ L+ LN+ FP +K L L + + SL +
Sbjct: 190 ------LSPTAFNSLSSLQVLNMSHNNFFSLDTFP---YKCLNSLQVLDYSLNHI 235
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 116/251 (46%), Gaps = 37/251 (14%)
Query: 138 SISTLEKLWLSETGLTAD-GIALLSSLQNLSVLDLG--GLPVTDLVLRSLQVLTKLEYLD 194
S +L L++ D G L L+NL LDL + +D L+ L L+YL+
Sbjct: 322 SFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLN 381
Query: 195 LWGSQVSNRGAAVLKMFPRLSFLNLAWTGV-TKLP-----NISSLECLNLSNCTIDS--- 245
L ++ K P+L L++A+T + K P N+ L LNLS+C +D+
Sbjct: 382 LSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQ 441
Query: 246 -ILEGNENKAPLAKISLAGTTF-------INEREAFLYIETSLLSFLDVSNSSLSRFCFL 297
+L G ++ L ++L G +F N + +E +LS ++ + F
Sbjct: 442 HLLAGLQD---LRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAF--- 495
Query: 298 TQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGH-LPNL--- 353
++ + HLDLS + + DS++ + ++L+ L L+ +S + I+ H LP L
Sbjct: 496 HGLRNVNHLDLSHNSLTGDSMDAL----SHLKGLYLN---MASNNIRIIPPHLLPALSQQ 548
Query: 354 EILSLSGTQID 364
I++LS +D
Sbjct: 549 SIINLSHNPLD 559
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 62/277 (22%), Positives = 118/277 (42%), Gaps = 52/277 (18%)
Query: 190 LEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEG 249
+E ++L + S+ ++ + F R+ L+L + LP S +E +N ++ ++
Sbjct: 255 VESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNGLP--SGIEGMN----SLKKLVLN 308
Query: 250 NENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLS 309
+ L +I+ A +F + R+ LYI+ ++ LD+ L + ++ L+ LDLS
Sbjct: 309 ANSFDQLCQINAA--SFPSLRD--LYIKGNMRK-LDLGTRCLEK------LENLQKLDLS 357
Query: 310 SSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAIS 369
S +E C L+NL +L+ L+LS +
Sbjct: 358 HS-----DIEASDCCNLQLKNLR-------------------HLQYLNLSYNEPLGLEDQ 393
Query: 370 YMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLF 429
P L+ +D++ T + V A + QNL+ L LNL + +
Sbjct: 394 AFKECPQLELLDVAFTHL-----HVKAPH------SPFQNLHLLRVLNLSHCLLDTSNQH 442
Query: 430 PLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSI 466
L+ ++L HL+L+ S D S+ + + L + +L I
Sbjct: 443 LLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEI 479
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 5/116 (4%)
Query: 139 ISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGS 198
+ LE LW+++ L A I + L NL+ L L + L R LTKL YL L +
Sbjct: 84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143
Query: 199 QVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEG 249
++ + V L L L + ++P ++ L+ L L N + + EG
Sbjct: 144 ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEG 199
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 25/115 (21%)
Query: 349 HLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQ 408
+L NLE L+L+G QI D IS +S + L + I T+ + ++ALQ
Sbjct: 64 YLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIG--------------TNKITDISALQ 107
Query: 409 NLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTN 463
NL +L L L + +SD + PL+ + L+L + H LS LS L+N
Sbjct: 108 NLTNLRELYLNEDNISDIS--PLANLTKXYSLNLG-------ANHNLSDLSPLSN 153
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 74/314 (23%), Positives = 134/314 (42%), Gaps = 87/314 (27%)
Query: 181 LRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSN 240
++ ++ LT LEYL+L G+Q+++ + L +L+ L + G K+ +IS+L+ NL+N
Sbjct: 59 IQGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNL---YIGTNKITDISALQ--NLTN 111
Query: 241 CTIDSILEGN-ENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQ 299
+ E N + +PLA + T S +N +LS L+
Sbjct: 112 LRELYLNEDNISDISPLANL------------------TKXYSLNLGANHNLSDLSPLSN 153
Query: 300 MKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLS 359
L +L ++ S + D V +A +L +L LSL+
Sbjct: 154 XTGLNYLTVTESKVKD--VTPIA--------------------------NLTDLYSLSLN 185
Query: 360 GTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLE 419
QI+D IS ++ + SL + ++ Q+ TD +T + N L L +
Sbjct: 186 YNQIED--ISPLASLTSLHY-------FTAYVNQI---TD----ITPVANXTRLNSLKIG 229
Query: 420 QTQVSDATLFPLSTFKELIHLSLRNASLTDVSL--------------HQLSSLSKLTNLS 465
+++D L PL+ +L L + ++D++ +Q+S +S L NLS
Sbjct: 230 NNKITD--LSPLANLSQLTWLEIGTNQISDINAVKDLTKLKXLNVGSNQISDISVLNNLS 287
Query: 466 -IRDAVLTNSGLGS 478
+ L N+ LG+
Sbjct: 288 QLNSLFLNNNQLGN 301
>pdb|2JQD|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of Lanp
Length = 169
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 145 LWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDL-VLRSLQVLTKLEYLDLWGSQVSNR 203
L LSE ++ D L NL L+L G + DL + L+ L L+ LDL+ +V+N
Sbjct: 74 LELSENRISGDLEVLAEKCPNLKHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL 133
Query: 204 GAA---VLKMFPRLSFLN 218
A V K+ P++ +L+
Sbjct: 134 NAYRENVFKLLPQVMYLD 151
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 333 LSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA-ISYMSMMPSLKFIDISNTDI 387
LS R S + +LA PNL+ L+LSG +I D + I + + +LK +D+ N ++
Sbjct: 76 LSENRIS-GDLEVLAEKCPNLKHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 130
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 12/122 (9%)
Query: 281 LSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS 340
L FL N L+ L ++ L+ L+LS + I D +E++A NL++LNLS +
Sbjct: 49 LEFLSTINVGLTSISNLPKLNKLKKLELSENRISGD-LEVLAEKCPNLKHLNLSGNKIKD 107
Query: 341 AGVGILAGHLPNLEILSLSG---TQIDDYAISYMSMMPSLKFID--------ISNTDIKG 389
L NL+ L L T ++ Y + ++P + ++D ++D++G
Sbjct: 108 LSTIEPLKKLENLKSLDLFNCEVTNLNAYRENVFKLLPQVMYLDGYDRDNKEAPDSDVEG 167
Query: 390 FI 391
++
Sbjct: 168 YV 169
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 12/80 (15%)
Query: 281 LSFLDVSNSSLSR-FCFLTQMKALEHLDLSSSMI-GDDSVEMVACVGANLRNLNLSNTRF 338
L FLDVS+++ S FL AL+HLD+S + + GD S + C L+ LN+S+ +F
Sbjct: 202 LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCT--ELKLLNISSNQF 259
Query: 339 SSAGVGILAGHLPNLEILSL 358
G +P L + SL
Sbjct: 260 --------VGPIPPLPLKSL 271
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 114/284 (40%), Gaps = 41/284 (14%)
Query: 134 KHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYL 193
+ L+ + TLE L L LT + + LS+ NL+ + L +T + + + L L L
Sbjct: 460 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519
Query: 194 DLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENK 253
L + S A L L +L+L NL N TI + + K
Sbjct: 520 KLSNNSFSGNIPAELGDCRSLIWLDLN---------------TNLFNGTIPAAMFKQSGK 564
Query: 254 APLAKISLAGTTFINEREAFLYIET----SLLSFLDVSNSSLSRF-----CFLTQMKALE 304
+A +AG ++ + + E +LL F + + L+R C +T
Sbjct: 565 --IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622
Query: 305 H-------------LDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLP 351
H LD+S +M+ + + + L LNL + S + + G L
Sbjct: 623 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM-PYLFILNLGHNDISGS-IPDEVGDLR 680
Query: 352 NLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVG 395
L IL LS ++D MS + L ID+SN ++ G I ++G
Sbjct: 681 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMG 724
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 12/80 (15%)
Query: 281 LSFLDVSNSSLSR-FCFLTQMKALEHLDLSSSMI-GDDSVEMVACVGANLRNLNLSNTRF 338
L FLDVS+++ S FL AL+HLD+S + + GD S + C L+ LN+S+ +F
Sbjct: 199 LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCT--ELKLLNISSNQF 256
Query: 339 SSAGVGILAGHLPNLEILSL 358
G +P L + SL
Sbjct: 257 --------VGPIPPLPLKSL 268
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 114/284 (40%), Gaps = 41/284 (14%)
Query: 134 KHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYL 193
+ L+ + TLE L L LT + + LS+ NL+ + L +T + + + L L L
Sbjct: 457 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 516
Query: 194 DLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENK 253
L + S A L L +L+L NL N TI + + K
Sbjct: 517 KLSNNSFSGNIPAELGDCRSLIWLDLN---------------TNLFNGTIPAAMFKQSGK 561
Query: 254 APLAKISLAGTTFINEREAFLYIET----SLLSFLDVSNSSLSRF-----CFLTQMKALE 304
+A +AG ++ + + E +LL F + + L+R C +T
Sbjct: 562 --IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 619
Query: 305 H-------------LDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLP 351
H LD+S +M+ + + + L LNL + S + + G L
Sbjct: 620 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM-PYLFILNLGHNDISGS-IPDEVGDLR 677
Query: 352 NLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVG 395
L IL LS ++D MS + L ID+SN ++ G I ++G
Sbjct: 678 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMG 721
>pdb|2JE0|A Chain A, Crystal Structure Of Pp32
pdb|2JE0|B Chain B, Crystal Structure Of Pp32
pdb|2JE0|C Chain C, Crystal Structure Of Pp32
pdb|2JE0|D Chain D, Crystal Structure Of Pp32
pdb|2JE0|E Chain E, Crystal Structure Of Pp32
pdb|2JE0|F Chain F, Crystal Structure Of Pp32
pdb|2JE1|A Chain A, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|B Chain B, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|C Chain C, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|D Chain D, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
Length = 149
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 333 LSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA-ISYMSMMPSLKFIDISNTDI 387
LS+ R S G+ +LA PNL L+LSG +I D + I + + +LK +D+ N ++
Sbjct: 71 LSDNRVS-GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 61/136 (44%), Gaps = 19/136 (13%)
Query: 251 ENKAPLAKISLAGTTFINEREAFLYIETSL-----LSFLDVSNSSLSRFC------FLTQ 299
+ K L ++SLAG +E A L E+ L L L V + SL+ C LTQ
Sbjct: 277 QAKETLKELSLAGNKLGDEG-ARLLCESLLQPGCQLESLWVKSCSLTAACCQHVSLMLTQ 335
Query: 300 MKALEHLDLSSSMIGDDSVEMVACV----GANLRNLNLSNTRFSSAGVGILAGHL---PN 352
K L L LSS+ +GD ++ + G LR L L + +++G LA L +
Sbjct: 336 NKHLLELQLSSNKLGDSGIQELCQALSQPGTTLRVLCLGDCEVTNSGCSSLASLLLANRS 395
Query: 353 LEILSLSGTQIDDYAI 368
L L LS + D +
Sbjct: 396 LRELDLSNNCVGDPGV 411
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 10/125 (8%)
Query: 107 ALWALTGMTCLKELDLSRC--VKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLS-SL 163
+L L T L +L+L RC K+ G ++ L L LS L + + LL +L
Sbjct: 48 SLATLMPYTRLTQLNLDRCELTKLQVDG-----TLPVLGTLDLSHNQLQS--LPLLGQTL 100
Query: 164 QNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTG 223
L+VLD+ +T L L +L+ L +L+ L L G+++ +L P+L L+LA
Sbjct: 101 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 160
Query: 224 VTKLP 228
+T+LP
Sbjct: 161 LTELP 165
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 65/154 (42%), Gaps = 20/154 (12%)
Query: 328 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDI 387
L LNL + V G LP L L LS Q+ + +P+L +D+S +
Sbjct: 58 LTQLNLDRCELTKLQVD---GTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRL 113
Query: 388 KGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFP--LSTFKELIHLSLRNA 445
L L AL+ L L+ L L+ ++ TL P L+ +L LSL N
Sbjct: 114 TS------------LPLGALRGLGELQELYLKGNELK--TLPPGLLTPTPKLEKLSLANN 159
Query: 446 SLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSF 479
+LT++ L+ L L L +++ L G F
Sbjct: 160 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 193
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 72/136 (52%), Gaps = 16/136 (11%)
Query: 72 LRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDA 131
G+NS + + +A + F L+ L+++ + S L L +T L+EL ++R
Sbjct: 46 FNGDNS-NIQSLAGMQFFTNLKELHLSHNQ---ISDLSPLKDLTKLEELSVNR------N 95
Query: 132 GMKHLLSIST--LEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTK 189
+K+L I + L +L+L L D +L+ L+NL +L + + +V+ L L+K
Sbjct: 96 RLKNLNGIPSACLSRLFLDNNEL-RDTDSLIH-LKNLEILSIRNNKLKSIVM--LGFLSK 151
Query: 190 LEYLDLWGSQVSNRGA 205
LE LDL G++++N G
Sbjct: 152 LEVLDLHGNEITNTGG 167
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 10/125 (8%)
Query: 107 ALWALTGMTCLKELDLSRC--VKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLS-SL 163
+L L T L +L+L RC K+ G ++ L L LS L + + LL +L
Sbjct: 47 SLATLMPYTRLTQLNLDRCELTKLQVDG-----TLPVLGTLDLSHNQLQS--LPLLGQTL 99
Query: 164 QNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTG 223
L+VLD+ +T L L +L+ L +L+ L L G+++ +L P+L L+LA
Sbjct: 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159
Query: 224 VTKLP 228
+T+LP
Sbjct: 160 LTELP 164
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 65/154 (42%), Gaps = 20/154 (12%)
Query: 328 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDI 387
L LNL + V G LP L L LS Q+ + +P+L +D+S +
Sbjct: 57 LTQLNLDRCELTKLQVD---GTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRL 112
Query: 388 KGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFP--LSTFKELIHLSLRNA 445
L L AL+ L L+ L L+ ++ TL P L+ +L LSL N
Sbjct: 113 TS------------LPLGALRGLGELQELYLKGNELK--TLPPGLLTPTPKLEKLSLANN 158
Query: 446 SLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSF 479
+LT++ L+ L L L +++ L G F
Sbjct: 159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|2ELL|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
Member B
pdb|2RR6|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
Member B
Length = 168
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 147 LSETGLTADGIALLSSLQNLSVLDLGGLPVTDL-VLRSLQVLTKLEYLDLWGSQVSNRG- 204
LSE + L L NL+ L+L G + D+ L L+ L L+ LDL+ +V+N
Sbjct: 78 LSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137
Query: 205 --AAVLKMFPRLSFLN 218
+V K+ P+L++L+
Sbjct: 138 YRESVFKLLPQLTYLD 153
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 341 AGVGILAGHLPNLEILSLSGTQIDDYA-ISYMSMMPSLKFIDISNTDI 387
G+ +LA LPNL L+LSG ++ D + + + + LK +D+ N ++
Sbjct: 85 GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV 132
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 10/125 (8%)
Query: 107 ALWALTGMTCLKELDLSRC--VKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLS-SL 163
+L L T L +L+L RC K+ G ++ L L LS L + + LL +L
Sbjct: 47 SLATLMPYTRLTQLNLDRCELTKLQVDG-----TLPVLGTLDLSHNQLQS--LPLLGQTL 99
Query: 164 QNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTG 223
L+VLD+ +T L L +L+ L +L+ L L G+++ +L P+L L+LA
Sbjct: 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQ 159
Query: 224 VTKLP 228
+T+LP
Sbjct: 160 LTELP 164
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 64/154 (41%), Gaps = 20/154 (12%)
Query: 328 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDI 387
L LNL + V G LP L L LS Q+ + +P+L +D+S +
Sbjct: 57 LTQLNLDRCELTKLQVD---GTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRL 112
Query: 388 KGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFP--LSTFKELIHLSLRNA 445
L L AL+ L L+ L L+ ++ TL P L+ +L LSL N
Sbjct: 113 TS------------LPLGALRGLGELQELYLKGNELK--TLPPGLLTPTPKLEKLSLANN 158
Query: 446 SLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSF 479
LT++ L+ L L L +++ L G F
Sbjct: 159 QLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 10/125 (8%)
Query: 107 ALWALTGMTCLKELDLSRC--VKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLS-SL 163
+L L T L +L+L RC K+ G ++ L L LS L + + LL +L
Sbjct: 47 SLATLMPYTRLTQLNLDRCELTKLQVDG-----TLPVLGTLDLSHNQLQS--LPLLGQTL 99
Query: 164 QNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTG 223
L+VLD+ +T L L +L+ L +L+ L L G+++ +L P+L L+LA
Sbjct: 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANND 159
Query: 224 VTKLP 228
+T+LP
Sbjct: 160 LTELP 164
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 64/154 (41%), Gaps = 20/154 (12%)
Query: 328 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDI 387
L LNL + V G LP L L LS Q+ + +P+L +D+S +
Sbjct: 57 LTQLNLDRCELTKLQVD---GTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRL 112
Query: 388 KGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFP--LSTFKELIHLSLRNA 445
L L AL+ L L+ L L+ ++ TL P L+ +L LSL N
Sbjct: 113 TS------------LPLGALRGLGELQELYLKGNELK--TLPPGLLTPTPKLEKLSLANN 158
Query: 446 SLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSF 479
LT++ L+ L L L +++ L G F
Sbjct: 159 DLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 10/125 (8%)
Query: 107 ALWALTGMTCLKELDLSRC--VKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLS-SL 163
+L L T L +L+L RC K+ G ++ L L LS L + + LL +L
Sbjct: 47 SLATLMPYTRLTQLNLDRCELTKLQVDG-----TLPVLGTLDLSHNQLQS--LPLLGQTL 99
Query: 164 QNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTG 223
L+VLD+ +T L L +L+ L +L+ L L G+++ +L P+L L+LA
Sbjct: 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQ 159
Query: 224 VTKLP 228
+T+LP
Sbjct: 160 LTELP 164
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 64/154 (41%), Gaps = 20/154 (12%)
Query: 328 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDI 387
L LNL + V G LP L L LS Q+ + +P+L +D+S +
Sbjct: 57 LTQLNLDRCELTKLQVD---GTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRL 112
Query: 388 KGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFP--LSTFKELIHLSLRNA 445
L L AL+ L L+ L L+ ++ TL P L+ +L LSL N
Sbjct: 113 TS------------LPLGALRGLGELQELYLKGNELK--TLPPGLLTPTPKLEKLSLANN 158
Query: 446 SLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSF 479
LT++ L+ L L L +++ L G F
Sbjct: 159 QLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 10/125 (8%)
Query: 107 ALWALTGMTCLKELDLSRC--VKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLS-SL 163
+L L T L +L+L RC K+ G ++ L L LS L + + LL +L
Sbjct: 47 SLATLMPYTRLTQLNLDRCELTKLQVDG-----TLPVLGTLDLSHNQLQS--LPLLGQTL 99
Query: 164 QNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTG 223
L+VLD+ +T L L +L+ L +L+ L L G+++ +L P+L L+LA
Sbjct: 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQ 159
Query: 224 VTKLP 228
+T+LP
Sbjct: 160 LTELP 164
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 62/152 (40%), Gaps = 16/152 (10%)
Query: 328 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDI 387
L LNL + V G LP L L LS Q+ + ++ P+L +D+S +
Sbjct: 57 LTQLNLDRCELTKLQVD---GTLPVLGTLDLSHNQLQSLPLLGQTL-PALTVLDVSFNRL 112
Query: 388 KGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASL 447
L L AL+ L L+ L L+ ++ L+ +L LSL N L
Sbjct: 113 TS------------LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Query: 448 TDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSF 479
T++ L+ L L L +++ L G F
Sbjct: 161 TELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 10/125 (8%)
Query: 107 ALWALTGMTCLKELDLSRC--VKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLS-SL 163
+L L T L +L+L RC K+ G ++ L L LS L + + LL +L
Sbjct: 47 SLATLMPYTRLTQLNLDRCELTKLQVDG-----TLPVLGTLDLSHNQLQS--LPLLGQTL 99
Query: 164 QNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTG 223
L+VLD+ +T L L +L+ L +L+ L L G+++ +L P+L L+LA
Sbjct: 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQ 159
Query: 224 VTKLP 228
+T+LP
Sbjct: 160 LTELP 164
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 65/154 (42%), Gaps = 20/154 (12%)
Query: 328 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDI 387
L LNL + V G LP L L LS Q+ + ++ P+L +D+S +
Sbjct: 57 LTQLNLDRCELTKLQVD---GTLPVLGTLDLSHNQLQSLPLLGQTL-PALTVLDVSFNRL 112
Query: 388 KGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFP--LSTFKELIHLSLRNA 445
L L AL+ L L+ L L+ ++ TL P L+ +L LSL N
Sbjct: 113 TS------------LPLGALRGLGELQELYLKGNELK--TLPPGLLTPTPKLEKLSLANN 158
Query: 446 SLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSF 479
LT++ L+ L L L +++ L G F
Sbjct: 159 QLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%)
Query: 162 SLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAW 221
+L L+VLD+ +T L L +L+ L +L+ L L G+++ +L P+L L+LA
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157
Query: 222 TGVTKLP 228
+T+LP
Sbjct: 158 NNLTELP 164
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 92 LRSLNVADC--RRVTSSALWALTGMTCLKELDL-SRCVKVTDAGMKHLLSISTLEKLWLS 148
L +L V D R+TS L AL G+ L+EL L +K G+ L LEKL L+
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL--LTPTPKLEKLSLA 156
Query: 149 ETGLTADGIALLSSLQNLSVL 169
LT LL+ L+NL L
Sbjct: 157 NNNLTELPAGLLNGLENLDTL 177
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 65/154 (42%), Gaps = 20/154 (12%)
Query: 328 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDI 387
L LNL + V G LP L L LS Q+ + +P+L +D+S +
Sbjct: 57 LTQLNLDRAELTKLQVD---GTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRL 112
Query: 388 KGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFP--LSTFKELIHLSLRNA 445
L L AL+ L L+ L L+ ++ TL P L+ +L LSL N
Sbjct: 113 TS------------LPLGALRGLGELQELYLKGNELK--TLPPGLLTPTPKLEKLSLANN 158
Query: 446 SLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSF 479
+LT++ L+ L L L +++ L G F
Sbjct: 159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%)
Query: 162 SLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAW 221
+L L+VLD+ +T L L +L+ L +L+ L L G+++ +L P+L L+LA
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157
Query: 222 TGVTKLP 228
+T+LP
Sbjct: 158 NNLTELP 164
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 92 LRSLNVADC--RRVTSSALWALTGMTCLKELDL-SRCVKVTDAGMKHLLSISTLEKLWLS 148
L +L V D R+TS L AL G+ L+EL L +K G+ L LEKL L+
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL--LTPTPKLEKLSLA 156
Query: 149 ETGLTADGIALLSSLQNLSVL 169
LT LL+ L+NL L
Sbjct: 157 NNNLTELPAGLLNGLENLDTL 177
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 65/154 (42%), Gaps = 20/154 (12%)
Query: 328 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDI 387
L LNL + V G LP L L LS Q+ + +P+L +D+S +
Sbjct: 57 LTQLNLDRAELTKLQVD---GTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRL 112
Query: 388 KGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFP--LSTFKELIHLSLRNA 445
L L AL+ L L+ L L+ ++ TL P L+ +L LSL N
Sbjct: 113 TS------------LPLGALRGLGELQELYLKGNELK--TLPPGLLTPTPKLEKLSLANN 158
Query: 446 SLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSF 479
+LT++ L+ L L L +++ L G F
Sbjct: 159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%)
Query: 162 SLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAW 221
+L L+VLD+ +T L L +L+ L +L+ L L G+++ +L P+L L+LA
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157
Query: 222 TGVTKLP 228
+T+LP
Sbjct: 158 NNLTELP 164
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 92 LRSLNVADC--RRVTSSALWALTGMTCLKELDL-SRCVKVTDAGMKHLLSISTLEKLWLS 148
L +L V D R+TS L AL G+ L+EL L +K G+ L LEKL L+
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL--LTPTPKLEKLSLA 156
Query: 149 ETGLTADGIALLSSLQNLSVL 169
LT LL+ L+NL L
Sbjct: 157 NNNLTELPAGLLNGLENLDTL 177
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 65/154 (42%), Gaps = 20/154 (12%)
Query: 328 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDI 387
L LNL + V G LP L L LS Q+ + +P+L +D+S +
Sbjct: 57 LTQLNLDRAELTKLQVD---GTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRL 112
Query: 388 KGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFP--LSTFKELIHLSLRNA 445
L L AL+ L L+ L L+ ++ TL P L+ +L LSL N
Sbjct: 113 TS------------LPLGALRGLGELQELYLKGNELK--TLPPGLLTPTPKLEKLSLANN 158
Query: 446 SLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSF 479
+LT++ L+ L L L +++ L G F
Sbjct: 159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 65/146 (44%), Gaps = 6/146 (4%)
Query: 110 ALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKL-WLSETGLTADGIALLSSLQNLSV 168
++T EL+ + ++ +K + I L + +L+ G I+ L L NL+
Sbjct: 30 SVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTY 89
Query: 169 LDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP 228
L L G + L LT L+ L L +Q+ + V L++LNLA + LP
Sbjct: 90 LILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP 149
Query: 229 -----NISSLECLNLSNCTIDSILEG 249
+++L L+LS + S+ EG
Sbjct: 150 KGVFDKLTNLTELDLSYNQLQSLPEG 175
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%)
Query: 110 ALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVL 169
A TG+ L++LDLS ++ + L L L GL G L L L L
Sbjct: 75 AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134
Query: 170 DLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSN 202
L + L + + L L +L L G+++S+
Sbjct: 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISS 167
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%)
Query: 110 ALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVL 169
A TG+ L++LDLS ++ + L L L GL G L L L L
Sbjct: 74 AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 133
Query: 170 DLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSN 202
L + L + + L L +L L G+++S+
Sbjct: 134 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISS 166
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 30/152 (19%)
Query: 86 LGAFRYLRSLNVADCRR--VTSSALWALTGMTCLKELDL--SRCVKVTDAGMKHLLSIST 141
+ +F++LR L + R + + + A G+ L L+L +R + + +L S
Sbjct: 81 VNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYL---SK 137
Query: 142 LEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVS 201
L++LWL + + + + +L LDLG L +L Y+
Sbjct: 138 LKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL-------------KRLSYIS------- 177
Query: 202 NRGAAVLKMFPRLSFLNLAWTGVTKLPNISSL 233
GA + L +LNLA + ++PN++ L
Sbjct: 178 -EGA--FEGLSNLRYLNLAMCNLREIPNLTPL 206
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 80/192 (41%), Gaps = 45/192 (23%)
Query: 297 LTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL 356
+ + +LEHLDLS + + + S + ++L LNL + + G L HL L+IL
Sbjct: 96 FSSLGSLEHLDLSYNYLSNLSSSWFKPL-SSLTFLNLLGNPYKTLGETSLFSHLTKLQIL 154
Query: 357 ------SLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNL 410
+ + Q D+A + L+ ++I +D++ + + SL ++QN+
Sbjct: 155 RVGNMDTFTKIQRKDFA-----GLTFLEELEIDASDLQSYEPK---------SLKSIQNV 200
Query: 411 NHL---------------------ERLNLEQTQVSDATLFPLSTFKE---LIHLSLRNAS 446
+HL E L L T + LST + + + RN
Sbjct: 201 SHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK 260
Query: 447 LTDVSLHQLSSL 458
+TD SL Q+ L
Sbjct: 261 ITDESLFQVMKL 272
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 303 LEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG 360
++H+DLS+S+I ++ + + L+NL+L R S V LA + NL L+LSG
Sbjct: 95 VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKN-SNLVRLNLSG 151
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 303 LEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG 360
++H+DLS+S+I ++ + + L+NL+L R S V LA + NL L+LSG
Sbjct: 57 VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKN-SNLVRLNLSG 113
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 72/313 (23%), Positives = 132/313 (42%), Gaps = 43/313 (13%)
Query: 88 AFRYLRSLNVADCRRVTSSALW-----ALTGMTCLKELDLSRCVKVTDAGMKHLLSISTL 142
AFR L +L + D + SS ++ A G+ L EL L C ++DA +K
Sbjct: 68 AFRNLPNLRILD---LGSSKIYFLHPDAFQGLFHLFELRLYFC-GLSDAVLK-------- 115
Query: 143 EKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLR-SLQVLTKLEYLDLWGSQVS 201
DG +L+ L+ LDL + L L S L L+ +D +Q+
Sbjct: 116 ------------DGY--FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161
Query: 202 NRGAAVLKMF--PRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKI 259
L+ LSF +LA + ++ +C+N + IL+ + N + I
Sbjct: 162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTV-DI 220
Query: 260 SLAGTTFINEREAF-----LYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIG 314
+ + I++ +AF +I + F ++ + + F L + ++ HLDLS +
Sbjct: 221 TGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLAR-SSVRHLDLSHGFVF 279
Query: 315 DDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMM 374
+ + + +L+ LNL+ + + G L NL++L+LS + + S +
Sbjct: 280 SLNSRVFETL-KDLKVLNLAYNKINKIADEAFYG-LDNLQVLNLSYNLLGELYSSNFYGL 337
Query: 375 PSLKFIDISNTDI 387
P + +ID+ I
Sbjct: 338 PKVAYIDLQKNHI 350
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 69/290 (23%), Positives = 124/290 (42%), Gaps = 32/290 (11%)
Query: 188 TKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN-----ISSLECLNLSNCT 242
+ + +LDL V + + V + L LNLA+ + K+ + + +L+ LNLS
Sbjct: 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL 325
Query: 243 IDSILEGNENKAP-LAKISLAGTTF-INEREAFLYIETSLLSFLDVSNSSLSRFCFLTQM 300
+ + N P +A I L I + + F ++E L LD+ +++L+ F+ +
Sbjct: 326 LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK--LQTLDLRDNALTTIHFIPSI 383
Query: 301 KALEHLDLSSSMIGDDSVEMVAC-VGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLS 359
+ + G+ V + + ANL ++LS R + + +P+L+IL L+
Sbjct: 384 PDI-------FLSGNKLVTLPKINLTANL--IHLSENRLENLDILYFLLRVPHLQILILN 434
Query: 360 GTQIDDYAISYM-SMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNL 418
+ + S PSL+ + + + Q+ ET+L + + L+HL+ L L
Sbjct: 435 QNRFSSCSGDQTPSENPSLEQLFLGEN-----MLQLAWETELCWDV--FEGLSHLQVLYL 487
Query: 419 EQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRD 468
++ P F L +LR SL L LS NL I D
Sbjct: 488 NHNYLNS---LPPGVFSHLT--ALRGLSLNSNRLTVLSHNDLPANLEILD 532
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 14/122 (11%)
Query: 91 YLRSLNVADCRRVTSSALW------------ALTGMTCLKELDLSRCVKVTDAGMKHLLS 138
Y+ + + CR +T LW A TG+T L++LDLS ++
Sbjct: 45 YVPAASFQSCRNLT--ILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRG 102
Query: 139 ISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGS 198
+ L L L GL G L L L L L + L + + L L +L L G+
Sbjct: 103 LGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGN 162
Query: 199 QV 200
++
Sbjct: 163 RI 164
>pdb|4EZG|A Chain A, Crystal Structure Of A Leucine Rich Hypothetical Protein
(Lmof2365_1307) From Listeria Monocytogenes Str. Li 2 At
1.50 A Resolution
pdb|4EZG|B Chain B, Crystal Structure Of A Leucine Rich Hypothetical Protein
(Lmof2365_1307) From Listeria Monocytogenes Str. Li 2 At
1.50 A Resolution
Length = 197
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 9/103 (8%)
Query: 139 ISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGS 198
+S LE+L + +T+D I LS L +L++LD+ D +L + L K+ +DL
Sbjct: 87 LSNLERLRIXGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL--- 143
Query: 199 QVSNRGAAV----LKMFPRLSFLNLAWTGVTKLPNISSLECLN 237
S GA LK P L LN+ + GV I LN
Sbjct: 144 --SYNGAITDIXPLKTLPELKSLNIQFDGVHDYRGIEDFPKLN 184
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 86/202 (42%), Gaps = 41/202 (20%)
Query: 110 ALTGMTCLKELDLSRCVKVTDAGMKHLLSIST-----LEKLWLSETGL------TADGIA 158
+TG TC + K D K L S+ + EKL L TGL T G+
Sbjct: 6 TVTGCTC------NEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLT 59
Query: 159 LLS-------SLQNLS------VLDLGGLPVTDLVLRSLQV-----LTKLEYLDLWGSQV 200
L+ LQ LS + +LG L + + L SL + LT+L+ L L G+Q+
Sbjct: 60 KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQL 119
Query: 201 SNRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNENK-A 254
+ + V +L L L + +P +++L+ L+LS + S+ G ++
Sbjct: 120 KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLG 179
Query: 255 PLAKISLAGTTFINEREAFLYI 276
L I+L G F R LY+
Sbjct: 180 KLQTITLFGNQFDCSRCEILYL 201
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 61/153 (39%), Gaps = 11/153 (7%)
Query: 92 LRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETG 151
LR L+++ + SA G+ L+ LD LS+ L L +S T
Sbjct: 378 LRHLDLSFNGAIIMSA--NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435
Query: 152 LTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQV-LTKLEYLDLWGSQVSNRGAAVLKM 210
D + L +L+ L + G D L ++ T L +LDL Q+ V
Sbjct: 436 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT 495
Query: 211 FPRLSFLNLAWTGV--------TKLPNISSLEC 235
RL LN++ + +L ++S+L+C
Sbjct: 496 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 61/153 (39%), Gaps = 11/153 (7%)
Query: 92 LRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETG 151
LR L+++ + SA G+ L+ LD LS+ L L +S T
Sbjct: 373 LRHLDLSFNGAIIMSA--NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 430
Query: 152 LTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQV-LTKLEYLDLWGSQVSNRGAAVLKM 210
D + L +L+ L + G D L ++ T L +LDL Q+ V
Sbjct: 431 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT 490
Query: 211 FPRLSFLNLAWTGV--------TKLPNISSLEC 235
RL LN++ + +L ++S+L+C
Sbjct: 491 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 523
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 56/261 (21%), Positives = 113/261 (43%), Gaps = 38/261 (14%)
Query: 165 NLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGV 224
N++VL+L + L + ++L LD + +S + ++ P L LNL +
Sbjct: 26 NITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNEL 85
Query: 225 TKLPNISSLECLNLSNCTI--DSI--LEGN--ENKAPLAKISLAGTTFINER-------- 270
+++ + + + C NL+ + +SI ++ N +N+ L K+ L+ + +
Sbjct: 86 SQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLE 145
Query: 271 -----------------EAFLYIETSLLSFLDVSNSSLSRF---CFLTQMKALEHLDLSS 310
E ++ S L LD+S++ L F CF T + L L L++
Sbjct: 146 NLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQT-IGKLFALLLNN 204
Query: 311 SMIGDDSVEMVACVGAN--LRNLNLSNTRFSSAGVGILAG-HLPNLEILSLSGTQIDDYA 367
+ + E + +N ++NL+L+N + + +G NL L LS + D
Sbjct: 205 AQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVG 264
Query: 368 ISYMSMMPSLKFIDISNTDIK 388
S +PSL+++ + +I+
Sbjct: 265 NGSFSYLPSLRYLSLEYNNIQ 285
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Query: 134 KHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYL 193
+HL + L++ + LT LL+ ++NLS L+L + ++ L LE +
Sbjct: 117 QHLDRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRA-NIEEMPSHLFDDLENLESI 175
Query: 194 DLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN 229
+ +++ + P+L LNLA + +P+
Sbjct: 176 EFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPD 211
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Query: 163 LQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQV------SNRGAAV--LKMFPRL 214
L+NL++LDL + ++ L+ L KLE LDL + + +N G + LK L
Sbjct: 484 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL 543
Query: 215 SFLNLAWTGVTKLP 228
LNL G ++P
Sbjct: 544 HILNLESNGFDEIP 557
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Query: 163 LQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQV------SNRGAAV--LKMFPRL 214
L+NL++LDL + ++ L+ L KLE LDL + + +N G + LK L
Sbjct: 479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL 538
Query: 215 SFLNLAWTGVTKLP 228
LNL G ++P
Sbjct: 539 HILNLESNGFDEIP 552
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Query: 163 LQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQV------SNRGAAV--LKMFPRL 214
L+NL++LDL + ++ L+ L KLE LDL + + +N G + LK L
Sbjct: 489 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL 548
Query: 215 SFLNLAWTGVTKLP 228
LNL G ++P
Sbjct: 549 HILNLESNGFDEIP 562
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 27/127 (21%)
Query: 214 LSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENK-----------APLAKISLA 262
LSF L G + L+ L+LS C I +I +G P+ ++L
Sbjct: 35 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94
Query: 263 GTTFINEREAFLYIETSLLSF-------------LDVSNSSLSRFC---FLTQMKALEHL 306
+ ++ + + +ET+L S L+V+++ + F + + + LEHL
Sbjct: 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154
Query: 307 DLSSSMI 313
DLSS+ I
Sbjct: 155 DLSSNKI 161
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,040,208
Number of Sequences: 62578
Number of extensions: 486852
Number of successful extensions: 1413
Number of sequences better than 100.0: 78
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 1120
Number of HSP's gapped (non-prelim): 233
length of query: 593
length of database: 14,973,337
effective HSP length: 104
effective length of query: 489
effective length of database: 8,465,225
effective search space: 4139495025
effective search space used: 4139495025
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)