Query 007693
Match_columns 593
No_of_seqs 504 out of 4898
Neff 10.3
Searched_HMMs 46136
Date Thu Mar 28 14:04:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007693.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007693hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 4.5E-45 9.7E-50 416.2 24.9 440 64-534 117-589 (968)
2 PLN00113 leucine-rich repeat r 100.0 5.9E-45 1.3E-49 415.3 25.6 415 64-497 139-585 (968)
3 KOG4194 Membrane glycoprotein 100.0 5.4E-44 1.2E-48 346.7 3.8 418 67-524 54-480 (873)
4 KOG4194 Membrane glycoprotein 100.0 5.8E-39 1.3E-43 311.8 2.1 365 64-467 77-447 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 1.2E-34 2.5E-39 270.2 -8.8 405 65-496 68-541 (565)
6 KOG0618 Serine/threonine phosp 100.0 3.7E-32 8E-37 278.4 -0.0 436 28-494 4-487 (1081)
7 KOG0472 Leucine-rich repeat pr 100.0 3E-33 6.4E-38 260.8 -8.4 472 25-529 12-541 (565)
8 KOG0444 Cytoskeletal regulator 100.0 1.9E-31 4E-36 261.6 -3.2 360 113-495 5-374 (1255)
9 KOG0444 Cytoskeletal regulator 100.0 2.1E-31 4.4E-36 261.3 -3.4 363 88-474 5-377 (1255)
10 KOG0618 Serine/threonine phosp 99.9 4.6E-29 9.9E-34 255.9 -4.1 432 24-494 47-511 (1081)
11 KOG4237 Extracellular matrix p 99.9 9.7E-27 2.1E-31 217.2 -4.2 430 25-493 49-498 (498)
12 KOG4237 Extracellular matrix p 99.9 5.9E-24 1.3E-28 198.7 -3.1 302 141-512 68-375 (498)
13 PLN03210 Resistant to P. syrin 99.9 7.9E-21 1.7E-25 217.4 19.5 195 83-288 551-756 (1153)
14 PRK15387 E3 ubiquitin-protein 99.9 3.2E-21 6.9E-26 204.8 13.7 233 214-495 224-457 (788)
15 PRK15387 E3 ubiquitin-protein 99.9 6.2E-21 1.3E-25 202.7 15.1 264 164-479 201-465 (788)
16 PLN03210 Resistant to P. syrin 99.8 1.4E-19 2.9E-24 207.4 21.6 334 133-496 551-906 (1153)
17 cd00116 LRR_RI Leucine-rich re 99.8 9.6E-19 2.1E-23 174.4 17.6 107 94-202 2-122 (319)
18 cd00116 LRR_RI Leucine-rich re 99.8 4.1E-18 8.8E-23 169.9 19.2 279 69-363 2-319 (319)
19 PRK15370 E3 ubiquitin-protein 99.8 2.6E-18 5.6E-23 184.0 12.8 224 232-495 200-427 (754)
20 PRK15370 E3 ubiquitin-protein 99.7 6.6E-18 1.4E-22 181.0 11.9 245 165-472 179-428 (754)
21 KOG4341 F-box protein containi 99.5 7.6E-15 1.7E-19 139.3 7.6 179 312-524 280-467 (483)
22 KOG1909 Ran GTPase-activating 99.5 5.9E-14 1.3E-18 130.5 5.7 193 295-495 86-310 (382)
23 KOG3207 Beta-tubulin folding c 99.4 2.4E-14 5.2E-19 136.7 1.2 212 252-474 119-341 (505)
24 KOG2120 SCF ubiquitin ligase, 99.4 1.1E-13 2.4E-18 125.7 4.7 223 14-241 121-373 (419)
25 KOG1909 Ran GTPase-activating 99.4 8.1E-13 1.8E-17 123.0 9.4 262 83-387 23-310 (382)
26 KOG0617 Ras suppressor protein 99.4 3.8E-15 8.3E-20 124.1 -6.5 184 295-498 27-214 (264)
27 KOG0617 Ras suppressor protein 99.4 4.9E-15 1.1E-19 123.5 -7.2 159 229-393 31-191 (264)
28 KOG3207 Beta-tubulin folding c 99.3 6.4E-13 1.4E-17 127.1 3.6 213 276-500 118-343 (505)
29 KOG4341 F-box protein containi 99.2 1.5E-11 3.3E-16 117.2 6.3 344 9-382 89-459 (483)
30 PF14580 LRR_9: Leucine-rich r 99.2 1.4E-11 3E-16 108.0 5.0 126 254-382 19-147 (175)
31 PF14580 LRR_9: Leucine-rich r 99.2 2.5E-11 5.3E-16 106.4 5.6 127 372-514 16-145 (175)
32 KOG1259 Nischarin, modulator o 99.1 4.6E-12 1E-16 115.3 -1.2 200 277-500 212-416 (490)
33 KOG1259 Nischarin, modulator o 99.1 9.4E-12 2E-16 113.4 -0.6 226 82-316 174-414 (490)
34 KOG2120 SCF ubiquitin ligase, 99.1 9.2E-11 2E-15 107.0 4.2 178 280-469 186-373 (419)
35 KOG0532 Leucine-rich repeat (L 99.1 3.7E-12 8E-17 125.8 -5.8 212 235-470 54-271 (722)
36 KOG0532 Leucine-rich repeat (L 99.0 1.2E-11 2.6E-16 122.2 -2.9 208 217-446 55-271 (722)
37 COG4886 Leucine-rich repeat (L 99.0 4.8E-10 1E-14 115.0 8.1 175 279-474 116-292 (394)
38 COG4886 Leucine-rich repeat (L 99.0 3.5E-10 7.5E-15 116.1 6.9 192 283-496 97-290 (394)
39 PLN03150 hypothetical protein; 99.0 9.2E-10 2E-14 118.2 7.8 110 376-497 419-529 (623)
40 PF13855 LRR_8: Leucine rich r 98.9 6E-10 1.3E-14 80.2 3.2 59 436-494 2-60 (61)
41 KOG4658 Apoptotic ATPase [Sign 98.9 7E-10 1.5E-14 121.7 5.1 198 66-268 524-731 (889)
42 PF13855 LRR_8: Leucine rich r 98.9 8.8E-10 1.9E-14 79.3 3.1 61 411-471 1-61 (61)
43 KOG0531 Protein phosphatase 1, 98.9 1.6E-10 3.5E-15 118.6 -1.7 223 227-497 91-319 (414)
44 PLN03150 hypothetical protein; 98.9 4E-09 8.8E-14 113.3 7.8 110 352-473 419-529 (623)
45 KOG0531 Protein phosphatase 1, 98.8 2.2E-10 4.9E-15 117.6 -2.8 194 277-496 93-290 (414)
46 KOG2982 Uncharacterized conser 98.8 1.7E-09 3.6E-14 98.9 3.1 162 229-390 95-264 (418)
47 COG5238 RNA1 Ran GTPase-activa 98.8 2.3E-08 4.9E-13 90.4 7.8 93 109-202 24-134 (388)
48 COG5238 RNA1 Ran GTPase-activa 98.7 3.4E-08 7.4E-13 89.3 6.5 206 295-507 86-327 (388)
49 KOG4658 Apoptotic ATPase [Sign 98.7 7.1E-09 1.5E-13 113.8 2.6 296 113-445 543-856 (889)
50 KOG1859 Leucine-rich repeat pr 98.6 1.7E-09 3.8E-14 110.1 -3.8 132 352-501 165-297 (1096)
51 KOG2982 Uncharacterized conser 98.6 1.8E-08 3.8E-13 92.3 2.2 206 140-366 45-264 (418)
52 KOG1859 Leucine-rich repeat pr 98.6 2.5E-09 5.4E-14 109.0 -3.7 124 165-292 165-292 (1096)
53 KOG3665 ZYG-1-like serine/thre 98.5 2.6E-07 5.7E-12 99.1 7.2 151 65-219 122-282 (699)
54 KOG3665 ZYG-1-like serine/thre 98.4 1.2E-06 2.5E-11 94.2 11.1 230 7-244 3-263 (699)
55 KOG1947 Leucine rich repeat pr 98.3 1.2E-06 2.6E-11 92.7 7.0 115 86-200 184-307 (482)
56 KOG4579 Leucine-rich repeat (L 98.3 8.7E-08 1.9E-12 77.6 -1.9 129 352-495 28-158 (177)
57 KOG1947 Leucine rich repeat pr 98.2 1.4E-06 3.1E-11 92.2 5.6 109 277-385 212-331 (482)
58 KOG1644 U2-associated snRNP A' 98.1 2.1E-06 4.5E-11 74.7 4.2 106 278-384 41-149 (233)
59 KOG1644 U2-associated snRNP A' 98.1 4.7E-06 1E-10 72.6 5.6 100 213-312 43-151 (233)
60 KOG4579 Leucine-rich repeat (L 98.0 5.8E-07 1.2E-11 73.0 -1.5 61 326-388 53-113 (177)
61 PF12799 LRR_4: Leucine Rich r 98.0 1E-05 2.2E-10 53.1 4.3 38 436-474 2-39 (44)
62 PF12799 LRR_4: Leucine Rich r 97.9 1E-05 2.2E-10 53.1 3.5 38 412-450 2-39 (44)
63 PF13306 LRR_5: Leucine rich r 97.7 4.5E-05 9.8E-10 64.4 4.6 119 349-485 10-128 (129)
64 KOG4308 LRR-containing protein 97.6 7E-06 1.5E-10 84.5 -2.2 207 166-386 89-329 (478)
65 PRK15386 type III secretion pr 97.6 0.00045 9.7E-09 68.7 10.1 74 277-363 50-124 (426)
66 PRK15386 type III secretion pr 97.6 0.00028 6.2E-09 70.1 8.7 35 111-150 48-82 (426)
67 KOG3864 Uncharacterized conser 97.4 7.7E-05 1.7E-09 65.3 2.4 84 66-150 102-186 (221)
68 KOG2739 Leucine-rich acidic nu 97.4 5.5E-05 1.2E-09 69.0 0.9 104 277-381 41-149 (260)
69 KOG2123 Uncharacterized conser 97.3 3.5E-05 7.6E-10 70.5 -1.1 99 66-170 20-123 (388)
70 KOG4308 LRR-containing protein 97.3 1.2E-05 2.7E-10 82.6 -4.6 207 281-495 89-330 (478)
71 PF13306 LRR_5: Leucine rich r 97.3 0.00073 1.6E-08 57.0 6.5 108 369-493 6-113 (129)
72 KOG2123 Uncharacterized conser 97.2 4.7E-05 1E-09 69.7 -1.8 101 278-381 18-123 (388)
73 KOG2739 Leucine-rich acidic nu 97.2 0.00018 3.8E-09 65.8 1.7 57 212-268 43-105 (260)
74 KOG3864 Uncharacterized conser 96.8 0.00069 1.5E-08 59.4 2.4 82 91-173 102-185 (221)
75 PF00560 LRR_1: Leucine Rich R 94.2 0.037 8E-07 30.0 1.8 20 460-480 1-20 (22)
76 smart00367 LRR_CC Leucine-rich 94.1 0.054 1.2E-06 30.8 2.5 22 115-136 2-23 (26)
77 PF00560 LRR_1: Leucine Rich R 93.9 0.031 6.8E-07 30.3 1.1 12 413-424 2-13 (22)
78 smart00367 LRR_CC Leucine-rich 93.7 0.07 1.5E-06 30.3 2.5 25 89-113 1-25 (26)
79 PF13504 LRR_7: Leucine rich r 92.2 0.095 2.1E-06 26.3 1.3 14 232-245 2-15 (17)
80 TIGR00864 PCC polycystin catio 91.8 0.071 1.5E-06 64.7 1.3 47 465-511 1-47 (2740)
81 PF13516 LRR_6: Leucine Rich r 91.3 0.18 3.9E-06 27.9 2.0 21 301-321 2-22 (24)
82 PF13516 LRR_6: Leucine Rich r 90.7 0.17 3.6E-06 28.0 1.5 21 351-371 2-22 (24)
83 smart00369 LRR_TYP Leucine-ric 90.0 0.3 6.5E-06 27.6 2.2 15 436-450 3-17 (26)
84 smart00370 LRR Leucine-rich re 90.0 0.3 6.5E-06 27.6 2.2 15 436-450 3-17 (26)
85 smart00370 LRR Leucine-rich re 90.0 0.21 4.6E-06 28.2 1.6 23 458-480 1-23 (26)
86 smart00369 LRR_TYP Leucine-ric 90.0 0.21 4.6E-06 28.2 1.6 23 458-480 1-23 (26)
87 smart00368 LRR_RI Leucine rich 88.0 0.83 1.8E-05 26.4 3.1 25 483-508 2-26 (28)
88 KOG0473 Leucine-rich repeat pr 85.2 0.016 3.4E-07 52.2 -7.6 85 349-448 40-124 (326)
89 KOG4242 Predicted myosin-I-bin 85.1 2.3 5E-05 42.9 6.3 68 437-505 415-489 (553)
90 smart00368 LRR_RI Leucine rich 82.6 1.9 4.2E-05 24.8 2.9 22 301-322 2-23 (28)
91 KOG4242 Predicted myosin-I-bin 82.1 10 0.00022 38.5 9.4 101 140-242 165-279 (553)
92 KOG0473 Leucine-rich repeat pr 81.7 0.051 1.1E-06 49.1 -5.9 93 367-474 34-126 (326)
93 KOG3763 mRNA export factor TAP 76.0 4.9 0.00011 41.6 5.3 80 433-514 216-306 (585)
94 KOG3763 mRNA export factor TAP 75.4 2.9 6.3E-05 43.1 3.5 38 299-336 216-254 (585)
95 smart00365 LRR_SD22 Leucine-ri 73.4 2.7 5.8E-05 23.8 1.6 15 459-473 2-16 (26)
96 smart00364 LRR_BAC Leucine-ric 68.1 3.2 6.9E-05 23.4 1.1 17 232-248 3-19 (26)
97 KOG1665 AFH1-interacting prote 31.9 49 0.0011 30.0 3.0 40 301-340 171-210 (302)
98 TIGR00864 PCC polycystin catio 26.8 45 0.00097 42.1 2.6 33 417-449 1-33 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.5e-45 Score=416.23 Aligned_cols=440 Identities=21% Similarity=0.231 Sum_probs=252.2
Q ss_pred cCCccEEEecCCCCCChhHHHHHhcCCCccEEEcCCCCccCchHHHhhhCCCCCcEEecCCCCCCChhhHHhhcCCCCCc
Q 007693 64 KHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLE 143 (593)
Q Consensus 64 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~~~~L~ 143 (593)
.++|++|+|++|+ +.+..+. +.+++|++|+|++|. +....+..++.+++|++|++++| .+....+..++++++|+
T Consensus 117 l~~L~~L~Ls~n~-l~~~~p~--~~l~~L~~L~Ls~n~-~~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~ 191 (968)
T PLN00113 117 SSSLRYLNLSNNN-FTGSIPR--GSIPNLETLDLSNNM-LSGEIPNDIGSFSSLKVLDLGGN-VLVGKIPNSLTNLTSLE 191 (968)
T ss_pred CCCCCEEECcCCc-cccccCc--cccCCCCEEECcCCc-ccccCChHHhcCCCCCEEECccC-cccccCChhhhhCcCCC
Confidence 3455555555554 2222221 234555555555554 43334444555556666666555 34444445555555566
Q ss_pred EEEccCCCCChhHHHHhcCCCCCCEEEcCCCCCChhhHHHhhcCCCCCEEEccCCccCccchHhhcCCCCCCeeeccccC
Q 007693 144 KLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTG 223 (593)
Q Consensus 144 ~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 223 (593)
+|++++|.+.+..+..++++++|++|++++|.+.+..|..++++++|++|++++|.+++..|..+..+++|+.|++++|.
T Consensus 192 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 271 (968)
T PLN00113 192 FLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK 271 (968)
T ss_pred eeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCe
Confidence 66665555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CcC-----CCCCCCCcEEEcCCCccc-chhcccCCCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcchh--h
Q 007693 224 VTK-----LPNISSLECLNLSNCTID-SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--C 295 (593)
Q Consensus 224 l~~-----l~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~ 295 (593)
+.+ +..+++|++|++++|.+. .+|..+..+++|+.|++++|.+.+..+. .+..+++|+.|++++|.+.+. .
T Consensus 272 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~p~ 350 (968)
T PLN00113 272 LSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV-ALTSLPRLQVLQLWSNKFSGEIPK 350 (968)
T ss_pred eeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCCh-hHhcCCCCCEEECcCCCCcCcCCh
Confidence 432 223455555555555554 3444444555555555555555432221 123455555555555555432 3
Q ss_pred hcccCCCccEEEccCCCCChhHHHHHHhc-----------------------cCCCcEEEcCCCCCCCchHHHHHcCCCC
Q 007693 296 FLTQMKALEHLDLSSSMIGDDSVEMVACV-----------------------GANLRNLNLSNTRFSSAGVGILAGHLPN 352 (593)
Q Consensus 296 ~l~~~~~L~~L~L~~n~l~~~~~~~~~~~-----------------------~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 352 (593)
.+..+++|+.|++++|.+++..+..+... +++|+.|++++|.+++..+..+ ..++.
T Consensus 351 ~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~-~~l~~ 429 (968)
T PLN00113 351 NLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF-TKLPL 429 (968)
T ss_pred HHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhH-hcCCC
Confidence 34444555555555555444333333332 1444444444444444333333 33444
Q ss_pred CcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCcccccc
Q 007693 353 LEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLS 432 (593)
Q Consensus 353 L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 432 (593)
|+.|++++|.+++..+..+..+++|+.|++++|.+.+..|. ....++|+.|++++|++++..|..+.
T Consensus 430 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~-------------~~~~~~L~~L~ls~n~l~~~~~~~~~ 496 (968)
T PLN00113 430 VYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD-------------SFGSKRLENLDLSRNQFSGAVPRKLG 496 (968)
T ss_pred CCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCc-------------ccccccceEEECcCCccCCccChhhh
Confidence 55555555544444444444455555555555555444443 22446788888888888888888888
Q ss_pred CCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcccccCccCCCCCceEecCCCccCCHHHHHHHH--hhCCc
Q 007693 433 TFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFC--KMHPR 510 (593)
Q Consensus 433 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~--~~~~~ 510 (593)
.+++|+.|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|++ .+..+..+. ..+..
T Consensus 497 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l-~~~~p~~l~~l~~L~~ 575 (968)
T PLN00113 497 SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL-SGEIPKNLGNVESLVQ 575 (968)
T ss_pred hhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcc-cccCChhHhcCcccCE
Confidence 889999999999999888888888999999999999999998888888889999999999988 333333332 22333
Q ss_pred EEEEeeeccccCCCCCCCCCCCCC
Q 007693 511 IEVWHELSVICPSDQIGSNGPSPS 534 (593)
Q Consensus 511 l~~~~~~~~~~~~~~~~~~~~~p~ 534 (593)
+++. .|.+.|.+|.
T Consensus 576 l~ls----------~N~l~~~~p~ 589 (968)
T PLN00113 576 VNIS----------HNHLHGSLPS 589 (968)
T ss_pred Eecc----------CCcceeeCCC
Confidence 4443 6677777775
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.9e-45 Score=415.25 Aligned_cols=415 Identities=20% Similarity=0.225 Sum_probs=327.3
Q ss_pred cCCccEEEecCCCCCChhHHHHHhcCCCccEEEcCCCCccCchHHHhhhCCCCCcEEecCCCCCCChhhHHhhcCCCCCc
Q 007693 64 KHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLE 143 (593)
Q Consensus 64 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~~~~L~ 143 (593)
.++|++|+|++|. +....+..++.+++|++|+|++|. +....+..+.++++|++|++++| .++...+..++++++|+
T Consensus 139 l~~L~~L~Ls~n~-~~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~ 215 (968)
T PLN00113 139 IPNLETLDLSNNM-LSGEIPNDIGSFSSLKVLDLGGNV-LVGKIPNSLTNLTSLEFLTLASN-QLVGQIPRELGQMKSLK 215 (968)
T ss_pred cCCCCEEECcCCc-ccccCChHHhcCCCCCEEECccCc-ccccCChhhhhCcCCCeeeccCC-CCcCcCChHHcCcCCcc
Confidence 4678888888886 556667778888888888888876 65556667788888888888888 56666667777788888
Q ss_pred EEEccCCCCChhHHHHhcCCCCCCEEEcCCCCCChhhHHHhhcCCCCCEEEccCCccCccchHhhcCCCCCCeeeccccC
Q 007693 144 KLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTG 223 (593)
Q Consensus 144 ~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 223 (593)
+|++++|.+++..+..++.+++|++|++++|.+.+..|..++++++|++|++++|.+.+..|..+..+++|++|++++|.
T Consensus 216 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295 (968)
T ss_pred EEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence 88888888777777777778888888888887777777777777777777777777777777777777777777777776
Q ss_pred CcC-----CCCCCCCcEEEcCCCccc-chhcccCCCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCC-------
Q 007693 224 VTK-----LPNISSLECLNLSNCTID-SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS------- 290 (593)
Q Consensus 224 l~~-----l~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~------- 290 (593)
+.+ +.++++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+..+. .+..+++|+.|++++|.
T Consensus 296 l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~~~~L~~L~Ls~n~l~~~~p~ 374 (968)
T PLN00113 296 LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK-NLGKHNNLTVLDLSTNNLTGEIPE 374 (968)
T ss_pred eccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCCh-HHhCCCCCcEEECCCCeeEeeCCh
Confidence 653 235566666666666665 3444455666666666666665532221 12244555555555554
Q ss_pred -----------------cchh--hhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCC
Q 007693 291 -----------------LSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLP 351 (593)
Q Consensus 291 -----------------l~~~--~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 351 (593)
+.+. ..+..+++|+.|++++|.+++..+..+..+ +.|+.|++++|.+++..+..+ ..++
T Consensus 375 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~~~~~-~~l~ 452 (968)
T PLN00113 375 GLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKL-PLVYFLDISNNNLQGRINSRK-WDMP 452 (968)
T ss_pred hHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcC-CCCCEEECcCCcccCccChhh-ccCC
Confidence 4333 345678899999999999988777777777 999999999999998777665 4689
Q ss_pred CCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccc
Q 007693 352 NLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPL 431 (593)
Q Consensus 352 ~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 431 (593)
+|++|++++|.+.+..|..+ ..++|+.|++++|++.+..|. .+..+++|+.|++++|.+.+.+|..+
T Consensus 453 ~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~------------~~~~l~~L~~L~Ls~N~l~~~~p~~~ 519 (968)
T PLN00113 453 SLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPR------------KLGSLSELMQLKLSENKLSGEIPDEL 519 (968)
T ss_pred CCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccCh------------hhhhhhccCEEECcCCcceeeCChHH
Confidence 99999999999988777654 468999999999999988887 68899999999999999999999999
Q ss_pred cCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcccccCccCCCCCceEecCCCccCC
Q 007693 432 STFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT 497 (593)
Q Consensus 432 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 497 (593)
..+++|++|++++|.+++..|..+..+++|+.|++++|++++..|..+..+++|+.|++++|++.+
T Consensus 520 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 520 SSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred cCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 999999999999999999999999999999999999999999999999999999999999999843
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=5.4e-44 Score=346.72 Aligned_cols=418 Identities=17% Similarity=0.247 Sum_probs=317.7
Q ss_pred ccEEEecCCCCCCh-hHHHHHhcC-CCccEEEcCCCCccCchHHHhhhCCCCCcEEecCCCCCCChhhHHhhc-CCCCCc
Q 007693 67 AEAIELRGENSVDA-EWMAYLGAF-RYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLL-SISTLE 143 (593)
Q Consensus 67 L~~L~L~~~~~~~~-~~~~~~~~~-~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~-~~~~L~ 143 (593)
.+.||.++.. +.. .+...-+-+ +.-+.|++++|+ +.+..+..|.++++|+++++.+| .++. ++.++ ...+|+
T Consensus 54 ~~lldcs~~~-lea~~~~~l~g~lp~~t~~LdlsnNk-l~~id~~~f~nl~nLq~v~l~~N-~Lt~--IP~f~~~sghl~ 128 (873)
T KOG4194|consen 54 TRLLDCSDRE-LEAIDKSRLKGFLPSQTQTLDLSNNK-LSHIDFEFFYNLPNLQEVNLNKN-ELTR--IPRFGHESGHLE 128 (873)
T ss_pred ceeeecCccc-cccccccccCCcCccceeeeeccccc-cccCcHHHHhcCCcceeeeeccc-hhhh--ccccccccccee
Confidence 5667777765 322 222111222 345668888777 77777777778888888888887 3433 33344 345578
Q ss_pred EEEccCCCCChhHHHHhcCCCCCCEEEcCCCCCChhhHHHhhcCCCCCEEEccCCccCccchHhhcCCCCCCeeeccccC
Q 007693 144 KLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTG 223 (593)
Q Consensus 144 ~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 223 (593)
.|+|.+|.|+.+..+.++.++.|+.|||+.|.|+.+....|..-.++++|+|++|.|+......|..+.+|..|.|+
T Consensus 129 ~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLs--- 205 (873)
T KOG4194|consen 129 KLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLS--- 205 (873)
T ss_pred EEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecc---
Confidence 88888887777777777777777788887777777666666666677777777777777666666666555554444
Q ss_pred CcCCCCCCCCcEEEcCCCcccchhcccC-CCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcchh--hhcccC
Q 007693 224 VTKLPNISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQM 300 (593)
Q Consensus 224 l~~l~~l~~L~~L~l~~n~l~~l~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~l~~~ 300 (593)
.|+++.+|...+ .+++|+.|+|..|.+.. ..+..|.++++|+.|.+..|.+..+ ..|..+
T Consensus 206 ----------------rNrittLp~r~Fk~L~~L~~LdLnrN~iri-ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l 268 (873)
T KOG4194|consen 206 ----------------RNRITTLPQRSFKRLPKLESLDLNRNRIRI-VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGL 268 (873)
T ss_pred ----------------cCcccccCHHHhhhcchhhhhhccccceee-ehhhhhcCchhhhhhhhhhcCcccccCcceeee
Confidence 555555555444 36666666666665543 2334566788888888888888777 567788
Q ss_pred CCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEE
Q 007693 301 KALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFI 380 (593)
Q Consensus 301 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L 380 (593)
.++++|+|+.|++....-..+.++ .+|+.|++++|.|....+..+ ..+++|++|+|+.|+|+...+..|..+..|++|
T Consensus 269 ~kme~l~L~~N~l~~vn~g~lfgL-t~L~~L~lS~NaI~rih~d~W-sftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~L 346 (873)
T KOG4194|consen 269 EKMEHLNLETNRLQAVNEGWLFGL-TSLEQLDLSYNAIQRIHIDSW-SFTQKLKELDLSSNRITRLDEGSFRVLSQLEEL 346 (873)
T ss_pred cccceeecccchhhhhhccccccc-chhhhhccchhhhheeecchh-hhcccceeEeccccccccCChhHHHHHHHhhhh
Confidence 889999999888887777777776 889999999998888877777 568899999999999998888888889999999
Q ss_pred EeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCc---cccccCCCCCcEEecCCCCCCchhHHhhhc
Q 007693 381 DISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT---LFPLSTFKELIHLSLRNASLTDVSLHQLSS 457 (593)
Q Consensus 381 ~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 457 (593)
+|++|.+...... +|.++++|++|||++|.+...+ ...|..+++|+.|++.+|++..+.-.+|.+
T Consensus 347 nLs~Nsi~~l~e~------------af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsg 414 (873)
T KOG4194|consen 347 NLSHNSIDHLAEG------------AFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSG 414 (873)
T ss_pred cccccchHHHHhh------------HHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhcc
Confidence 9999998876655 7889999999999999876533 344788999999999999999999999999
Q ss_pred CCCCcEEEecCcccCcccccCccCCCCCceEecCCCccCCHHHHHHHHhhCCcEEEEeeeccccCCC
Q 007693 458 LSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSD 524 (593)
Q Consensus 458 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 524 (593)
++.|+.|||.+|.|..+.+.+|.++ .|++|.+..-.|.|+|.++|+.+|+-...+...-...|..+
T Consensus 415 l~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq~sv~a~CayP 480 (873)
T KOG4194|consen 415 LEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWLYRRKLQSSVIAKCAYP 480 (873)
T ss_pred CcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHHHHHHHhcccccceeeeccCC
Confidence 9999999999999999999999998 99999999999999999999999987766665555666443
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=5.8e-39 Score=311.80 Aligned_cols=365 Identities=21% Similarity=0.288 Sum_probs=257.5
Q ss_pred cCCccEEEecCCCCCChhHHHHHhcCCCccEEEcCCCCccCchHHHhhhCCCCCcEEecCCCCCCChhhHHhhcCCCCCc
Q 007693 64 KHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLE 143 (593)
Q Consensus 64 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~~~~L~ 143 (593)
+...+.||+++|. +...-+..|.++++|+.+++..|. ++. .|.......+|+.|+|.+| .++......+..++.|+
T Consensus 77 p~~t~~LdlsnNk-l~~id~~~f~nl~nLq~v~l~~N~-Lt~-IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~alr 152 (873)
T KOG4194|consen 77 PSQTQTLDLSNNK-LSHIDFEFFYNLPNLQEVNLNKNE-LTR-IPRFGHESGHLEKLDLRHN-LISSVTSEELSALPALR 152 (873)
T ss_pred ccceeeeeccccc-cccCcHHHHhcCCcceeeeeccch-hhh-cccccccccceeEEeeecc-ccccccHHHHHhHhhhh
Confidence 4568889999997 667778889999999999999887 554 2332334567999999999 78888888899999999
Q ss_pred EEEccCCCCChhHHHHhcCCCCCCEEEcCCCCCChhhHHHhhcCCCCCEEEccCCccCccchHhhcCCCCCCeeeccccC
Q 007693 144 KLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTG 223 (593)
Q Consensus 144 ~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 223 (593)
.|||+.|.|+.+....|..-.++++|+|++|.|+......|..+.+|..|.|+.|.++...+.+|..+++|+.|+|..|.
T Consensus 153 slDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ 232 (873)
T KOG4194|consen 153 SLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR 232 (873)
T ss_pred hhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc
Confidence 99999999998877788888899999999999999999999999999999999999999999999999999999999998
Q ss_pred CcC-----CCCCCCCcEEEcCCCcccchhcccC-CCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcchhhhc
Q 007693 224 VTK-----LPNISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFL 297 (593)
Q Consensus 224 l~~-----l~~l~~L~~L~l~~n~l~~l~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l 297 (593)
|.- +..+++|+.|.+..|.+..+.++.+ .+.++++|+|..|.+..+... ++
T Consensus 233 irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g-----------------------~l 289 (873)
T KOG4194|consen 233 IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEG-----------------------WL 289 (873)
T ss_pred eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcc-----------------------cc
Confidence 764 4578888888888888888777666 666677777666666655544 33
Q ss_pred ccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCC
Q 007693 298 TQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSL 377 (593)
Q Consensus 298 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L 377 (593)
.+++.|+.|++++|.|....+..+.-. ++|++|+|++|.++......+ ..+..|++|+|++|.+......+|..+++|
T Consensus 290 fgLt~L~~L~lS~NaI~rih~d~Wsft-qkL~~LdLs~N~i~~l~~~sf-~~L~~Le~LnLs~Nsi~~l~e~af~~lssL 367 (873)
T KOG4194|consen 290 FGLTSLEQLDLSYNAIQRIHIDSWSFT-QKLKELDLSSNRITRLDEGSF-RVLSQLEELNLSHNSIDHLAEGAFVGLSSL 367 (873)
T ss_pred cccchhhhhccchhhhheeecchhhhc-ccceeEeccccccccCChhHH-HHHHHhhhhcccccchHHHHhhHHHHhhhh
Confidence 344555555555555544444443332 555555555555555555544 235555555555555555555555555555
Q ss_pred CEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhc
Q 007693 378 KFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSS 457 (593)
Q Consensus 378 ~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 457 (593)
+.|||++|.++..+.+ ....|.++++|+.|+|.+|++..+.-.+|.+++.|+.|+|.+|.|..+-+++|..
T Consensus 368 ~~LdLr~N~ls~~IED---------aa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~ 438 (873)
T KOG4194|consen 368 HKLDLRSNELSWCIED---------AAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEP 438 (873)
T ss_pred hhhcCcCCeEEEEEec---------chhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccccccc
Confidence 5555555555544433 1224555555556666665555555555555555666666655555555555555
Q ss_pred CCCCcEEEec
Q 007693 458 LSKLTNLSIR 467 (593)
Q Consensus 458 l~~L~~L~L~ 467 (593)
+ .|+.|.+.
T Consensus 439 m-~Lk~Lv~n 447 (873)
T KOG4194|consen 439 M-ELKELVMN 447 (873)
T ss_pred c-hhhhhhhc
Confidence 5 55555443
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.97 E-value=1.2e-34 Score=270.17 Aligned_cols=405 Identities=19% Similarity=0.214 Sum_probs=284.2
Q ss_pred CCccEEEecCCCCCChhHHHHHhcCCCccEEEcCCCCccCchHHHhhhCCCCCcEEecCCCCCCChhhHHhhcCCCCCcE
Q 007693 65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEK 144 (593)
Q Consensus 65 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~~~~L~~ 144 (593)
..+++|++++|. -...|++++++..++.++.++|+ +. ..++.+..+..|..|+.++|. +. ..+..++.+..|+.
T Consensus 68 ~~l~vl~~~~n~--l~~lp~aig~l~~l~~l~vs~n~-ls-~lp~~i~s~~~l~~l~~s~n~-~~-el~~~i~~~~~l~d 141 (565)
T KOG0472|consen 68 ACLTVLNVHDNK--LSQLPAAIGELEALKSLNVSHNK-LS-ELPEQIGSLISLVKLDCSSNE-LK-ELPDSIGRLLDLED 141 (565)
T ss_pred cceeEEEeccch--hhhCCHHHHHHHHHHHhhcccch-Hh-hccHHHhhhhhhhhhhccccc-ee-ecCchHHHHhhhhh
Confidence 447777777775 23456667777777777777776 43 356667777788888888774 22 23556667777888
Q ss_pred EEccCCCCChhHHHHhcCCCCCCEEEcCCCCCChhhHHHhhcCCCCCEEEccCCccCccchHhhcCCCCCCeeeccccCC
Q 007693 145 LWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGV 224 (593)
Q Consensus 145 L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 224 (593)
++..+|+++.. |+.+.++.+|..+++.+|++....+..+. ++.|++||...|.+. ..|..++.+.+|..|++..|++
T Consensus 142 l~~~~N~i~sl-p~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki 218 (565)
T KOG0472|consen 142 LDATNNQISSL-PEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKI 218 (565)
T ss_pred hhccccccccC-chHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhccc
Confidence 88888877765 44566777888888888888776666665 888888888888776 5667788888999999999988
Q ss_pred cCCC---CCCCCcEEEcCCCcccchhcccC-CCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcchh-hhccc
Q 007693 225 TKLP---NISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQ 299 (593)
Q Consensus 225 ~~l~---~l~~L~~L~l~~n~l~~l~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~l~~ 299 (593)
..+| .|..|.+++++.|++..+|+... +++++..|++.+|++...|..+. -+.+|++||+|+|.++++ ..+++
T Consensus 219 ~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~c--lLrsL~rLDlSNN~is~Lp~sLgn 296 (565)
T KOG0472|consen 219 RFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEIC--LLRSLERLDLSNNDISSLPYSLGN 296 (565)
T ss_pred ccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHH--HhhhhhhhcccCCccccCCccccc
Confidence 7644 67778888888888888887777 88888888888888888888765 567888888888888888 66777
Q ss_pred CCCccEEEccCCCCChhHHHHH-----------Hh-----------------------------ccCCCcEEEcCCCCCC
Q 007693 300 MKALEHLDLSSSMIGDDSVEMV-----------AC-----------------------------VGANLRNLNLSNTRFS 339 (593)
Q Consensus 300 ~~~L~~L~L~~n~l~~~~~~~~-----------~~-----------------------------~~~~L~~L~l~~n~l~ 339 (593)
+ +|+.|.+.+|.+...--+.+ .. ...+.+.|+++.-+++
T Consensus 297 l-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt 375 (565)
T KOG0472|consen 297 L-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT 375 (565)
T ss_pred c-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc
Confidence 7 88888888887643211111 00 0023556667766677
Q ss_pred CchHHHHHcCC-CCCcEEEccCCCCChH-----------------------HHHHhhcCCCCCEEEeeCCccCccccccc
Q 007693 340 SAGVGILAGHL-PNLEILSLSGTQIDDY-----------------------AISYMSMMPSLKFIDISNTDIKGFIQQVG 395 (593)
Q Consensus 340 ~~~~~~~~~~~-~~L~~L~l~~n~i~~~-----------------------~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~ 395 (593)
..+.+.|...= .-....+++.|++.+. ++..++.+++|+.|++++|.+...+.+
T Consensus 376 ~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e-- 453 (565)
T KOG0472|consen 376 LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEE-- 453 (565)
T ss_pred cCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchh--
Confidence 66665553211 1255666666655432 333445567777777777666555444
Q ss_pred cchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCccc
Q 007693 396 AETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSG 475 (593)
Q Consensus 396 ~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 475 (593)
++.+..|+.|+++.|+|.. .|..+..+..|+.+-.++|++..+.++.+.++.+|++||+.+|.+..+
T Consensus 454 -----------~~~lv~Lq~LnlS~NrFr~-lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~I- 520 (565)
T KOG0472|consen 454 -----------MGSLVRLQTLNLSFNRFRM-LPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQI- 520 (565)
T ss_pred -----------hhhhhhhheeccccccccc-chHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhC-
Confidence 5666667777777777665 455555555566666666777777777788888888888888888765
Q ss_pred ccCccCCCCCceEecCCCccC
Q 007693 476 LGSFKPPRSLKLLDLHGGWLL 496 (593)
Q Consensus 476 ~~~~~~~~~L~~L~l~~n~~~ 496 (593)
|..+.++.+|++|+++||+|.
T Consensus 521 Pp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 521 PPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ChhhccccceeEEEecCCccC
Confidence 666788888888888888883
No 6
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=3.7e-32 Score=278.36 Aligned_cols=436 Identities=22% Similarity=0.247 Sum_probs=324.4
Q ss_pred hhhhcccccCchHHHH-HHHHHHHHhccc---Chh-hHhhhcCCccEEEecCCCCCChhHHHHHhcCCCccEEEcCCCCc
Q 007693 28 RRQRRSLERLPAHLAD-SLLRHLIRRRLI---FPS-LLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRR 102 (593)
Q Consensus 28 ~~~~~~l~~lp~~l~~-~~l~~l~~~~~~---~p~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 102 (593)
+.+...++.+|..+.. +.+..+...+.. .|- .++. +-+|+.||++.|. ...+|..+..+++|+.|++++|.
T Consensus 4 d~s~~~l~~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~-~v~L~~l~lsnn~--~~~fp~~it~l~~L~~ln~s~n~- 79 (1081)
T KOG0618|consen 4 DASDEQLELIPEQILNNEALQILNLRRNSLLSRPLEFVEK-RVKLKSLDLSNNQ--ISSFPIQITLLSHLRQLNLSRNY- 79 (1081)
T ss_pred ccccccCcccchhhccHHHHHhhhccccccccCchHHhhh-eeeeEEeeccccc--cccCCchhhhHHHHhhcccchhh-
Confidence 3455677788877765 334443333221 221 1222 2349999999885 34567777788899999999876
Q ss_pred cCchHHHhhhCCCCCcEEecCCCCCCChhhHHhhcCCCCCcEEEccCCCCChhHHHHhcCCC------------------
Q 007693 103 VTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQ------------------ 164 (593)
Q Consensus 103 i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~l~------------------ 164 (593)
|.. .+.+..++++|++|.|.+|. ....+..+..+++|++|++++|.+...+. .+..++
T Consensus 80 i~~-vp~s~~~~~~l~~lnL~~n~--l~~lP~~~~~lknl~~LdlS~N~f~~~Pl-~i~~lt~~~~~~~s~N~~~~~lg~ 155 (1081)
T KOG0618|consen 80 IRS-VPSSCSNMRNLQYLNLKNNR--LQSLPASISELKNLQYLDLSFNHFGPIPL-VIEVLTAEEELAASNNEKIQRLGQ 155 (1081)
T ss_pred Hhh-Cchhhhhhhcchhheeccch--hhcCchhHHhhhcccccccchhccCCCch-hHHhhhHHHHHhhhcchhhhhhcc
Confidence 654 34667888999999999984 44557788889999999999998765432 122222
Q ss_pred -CCCEEEcCCCCCChhhHHHhhcCCCCCEEEccCCccCccchHhhcCCCCCCee--------------------eccccC
Q 007693 165 -NLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFL--------------------NLAWTG 223 (593)
Q Consensus 165 -~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L--------------------~l~~n~ 223 (593)
.++.+++..|.+.+..+..+..+.+ .|+|..|.+.. ..+..+++|+.+ +..+|.
T Consensus 156 ~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~---~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~ 230 (1081)
T KOG0618|consen 156 TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV---LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNP 230 (1081)
T ss_pred ccchhhhhhhhhcccchhcchhhhhe--eeecccchhhh---hhhhhccchhhhhhhhcccceEEecCcchheeeeccCc
Confidence 2555555556555555555554444 58888887662 223334444444 444444
Q ss_pred CcCC---CCCCCCcEEEcCCCcccchhcccCCCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcchh-hhccc
Q 007693 224 VTKL---PNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQ 299 (593)
Q Consensus 224 l~~l---~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~l~~ 299 (593)
+..+ +...+|+++++++|++..+|+|+..+.+|+.+....|.+..++.... ...+|+.|.+..|.+..+ +....
T Consensus 231 l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~--~~~~L~~l~~~~nel~yip~~le~ 308 (1081)
T KOG0618|consen 231 LTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRIS--RITSLVSLSAAYNELEYIPPFLEG 308 (1081)
T ss_pred ceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHh--hhhhHHHHHhhhhhhhhCCCcccc
Confidence 4322 23457899999999999999999999999999999999988777654 668899999999999888 55566
Q ss_pred CCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCE
Q 007693 300 MKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKF 379 (593)
Q Consensus 300 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~ 379 (593)
.+.|++|+|..|.+.......+.....+|..|+.+.|++...+...- ..++.|+.|.+.+|.+++.....+.+++.|+.
T Consensus 309 ~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e-~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKV 387 (1081)
T KOG0618|consen 309 LKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEE-NNHAALQELYLANNHLTDSCFPVLVNFKHLKV 387 (1081)
T ss_pred cceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccc-hhhHHHHHHHHhcCcccccchhhhccccceee
Confidence 89999999999999876665555443457888888888776542211 34668999999999999988788899999999
Q ss_pred EEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhcCC
Q 007693 380 IDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLS 459 (593)
Q Consensus 380 L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 459 (593)
|+|++|++..++.. .+.++..|++|+||||+++. +|..+..++.|++|...+|.+... | .+..++
T Consensus 388 LhLsyNrL~~fpas------------~~~kle~LeeL~LSGNkL~~-Lp~tva~~~~L~tL~ahsN~l~~f-P-e~~~l~ 452 (1081)
T KOG0618|consen 388 LHLSYNRLNSFPAS------------KLRKLEELEELNLSGNKLTT-LPDTVANLGRLHTLRAHSNQLLSF-P-ELAQLP 452 (1081)
T ss_pred eeecccccccCCHH------------HHhchHHhHHHhcccchhhh-hhHHHHhhhhhHHHhhcCCceeec-h-hhhhcC
Confidence 99999999877766 78999999999999999998 668899999999999999999884 4 788999
Q ss_pred CCcEEEecCcccCcccccCccCCCCCceEecCCCc
Q 007693 460 KLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGW 494 (593)
Q Consensus 460 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 494 (593)
.|+.+|++.|.++......-.+-++|++||++||.
T Consensus 453 qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 453 QLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred cceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 99999999999998766555555899999999998
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.97 E-value=3e-33 Score=260.83 Aligned_cols=472 Identities=19% Similarity=0.169 Sum_probs=367.4
Q ss_pred HhHhhhhcccccCchHHHHHHHHHHHHhcccChhhHhhhcCCccEEEecCCCCCChhHHHHHhcCCCccEEEcCCCCccC
Q 007693 25 QKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVT 104 (593)
Q Consensus 25 ~~~~~~~~~l~~lp~~l~~~~l~~l~~~~~~~p~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~ 104 (593)
....++.+.+..+|..+.+-.+..-. ...++ ....+..+.+++|. + ....+.+.++..|.+|++++|+ +.
T Consensus 12 g~lnlsnr~l~~vp~~vyq~~~t~~e------~e~wW-~qv~l~~lils~N~-l-~~l~~dl~nL~~l~vl~~~~n~-l~ 81 (565)
T KOG0472|consen 12 GSLNLSNRSLKDVPTEVYQINLTTGE------GENWW-EQVDLQKLILSHND-L-EVLREDLKNLACLTVLNVHDNK-LS 81 (565)
T ss_pred cccccccchhhhccHHHHHHHhhccc------hhhhh-hhcchhhhhhccCc-h-hhccHhhhcccceeEEEeccch-hh
Confidence 45677888999999988874321110 01111 12458999999996 3 3445667899999999999998 43
Q ss_pred chHHHhhhCCCCCcEEecCCCCCCChhhHHhhcCCCCCcEEEccCCCCChhHHHHhcCCCCCCEEEcCCCCCChhhHHHh
Q 007693 105 SSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSL 184 (593)
Q Consensus 105 ~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l 184 (593)
. .+.+++.+..++.|++++|+ ....+..+..+.+|+.++.++|.+... ++.++.+-.|+.++..+|++.. .|..+
T Consensus 82 ~-lp~aig~l~~l~~l~vs~n~--ls~lp~~i~s~~~l~~l~~s~n~~~el-~~~i~~~~~l~dl~~~~N~i~s-lp~~~ 156 (565)
T KOG0472|consen 82 Q-LPAAIGELEALKSLNVSHNK--LSELPEQIGSLISLVKLDCSSNELKEL-PDSIGRLLDLEDLDATNNQISS-LPEDM 156 (565)
T ss_pred h-CCHHHHHHHHHHHhhcccch--HhhccHHHhhhhhhhhhhccccceeec-CchHHHHhhhhhhhcccccccc-CchHH
Confidence 3 67788999999999999994 345678888999999999999988765 4457788899999999999986 56778
Q ss_pred hcCCCCCEEEccCCccCccchHhhcCCCCCCeeeccccCCcCCC----CCCCCcEEEcCCCcccchhcccCCCCCcceEe
Q 007693 185 QVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP----NISSLECLNLSNCTIDSILEGNENKAPLAKIS 260 (593)
Q Consensus 185 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~----~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~ 260 (593)
..+.+|..+++.+|++....+..+. ++.|+++|...|.++.+| .+.+|.-|++..|++..+| .+.+|..|.+++
T Consensus 157 ~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh 234 (565)
T KOG0472|consen 157 VNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELH 234 (565)
T ss_pred HHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHH
Confidence 8899999999999999987777776 999999999999999877 5788888999999999998 788999999999
Q ss_pred ccCccccchhhHHhhhcCCCccEEeccCCCcchh-hhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCC
Q 007693 261 LAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFS 339 (593)
Q Consensus 261 l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 339 (593)
++.|.+..++... ..+++++..||+.+|+++++ +.+.-+++|++||+++|.+++ .+..++.+ +|+.|.+.+|.+.
T Consensus 235 ~g~N~i~~lpae~-~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~-Lp~sLgnl--hL~~L~leGNPlr 310 (565)
T KOG0472|consen 235 VGENQIEMLPAEH-LKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISS-LPYSLGNL--HLKFLALEGNPLR 310 (565)
T ss_pred hcccHHHhhHHHH-hcccccceeeeccccccccCchHHHHhhhhhhhcccCCcccc-CCcccccc--eeeehhhcCCchH
Confidence 9999998887763 46889999999999999998 667788999999999999996 45556664 7888888888765
Q ss_pred CchHHHHHc----------------------------------------CCCCCcEEEccCCCCChHHHHHhhc--CCCC
Q 007693 340 SAGVGILAG----------------------------------------HLPNLEILSLSGTQIDDYAISYMSM--MPSL 377 (593)
Q Consensus 340 ~~~~~~~~~----------------------------------------~~~~L~~L~l~~n~i~~~~~~~l~~--~~~L 377 (593)
..-...+-+ .+.+.+.|++++-+++..+...|.. -.-.
T Consensus 311 TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~V 390 (565)
T KOG0472|consen 311 TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIV 390 (565)
T ss_pred HHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcce
Confidence 422211100 2236788888888888776666653 2347
Q ss_pred CEEEeeCCccCccccccccchhhhh-----------hHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCC
Q 007693 378 KFIDISNTDIKGFIQQVGAETDLVL-----------SLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNAS 446 (593)
Q Consensus 378 ~~L~Ls~n~i~~~~~~~~~~~~~~~-----------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 446 (593)
+..++++|++...+........-+. .-..+..+++|..|+|++|-+.+ +|..++.+..|+.|++++|+
T Consensus 391 t~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~-LP~e~~~lv~Lq~LnlS~Nr 469 (565)
T KOG0472|consen 391 TSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLND-LPEEMGSLVRLQTLNLSFNR 469 (565)
T ss_pred EEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhh-cchhhhhhhhhheecccccc
Confidence 7888999988765543111000000 00246788999999999998888 77888899999999999999
Q ss_pred CCchhHHhhhcCCCCcEEEecCcccCcccccCccCCCCCceEecCCCccCCHHHHHHHHhhCCcEEEEeeeccccCCCCC
Q 007693 447 LTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQI 526 (593)
Q Consensus 447 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 526 (593)
+.. .|..+..+..++.+-.++|++..+.++.+.++.+|..||+.+|.+..-+...+-...+.++++. +|
T Consensus 470 Fr~-lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~----------gN 538 (565)
T KOG0472|consen 470 FRM-LPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELD----------GN 538 (565)
T ss_pred ccc-chHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEec----------CC
Confidence 987 6778888888999999999999999999999999999999999986544444445556666665 77
Q ss_pred CCC
Q 007693 527 GSN 529 (593)
Q Consensus 527 ~~~ 529 (593)
+|+
T Consensus 539 pfr 541 (565)
T KOG0472|consen 539 PFR 541 (565)
T ss_pred ccC
Confidence 776
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=1.9e-31 Score=261.60 Aligned_cols=360 Identities=21% Similarity=0.215 Sum_probs=290.1
Q ss_pred CCCCCcEEecCCCCCCChhhHHhhcCCCCCcEEEccCCCCChhHHHHhcCCCCCCEEEcCCCCCChhhHHHhhcCCCCCE
Q 007693 113 GMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEY 192 (593)
Q Consensus 113 ~l~~L~~L~L~~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 192 (593)
-++-.+-.|+++|..-.+..|.....+++++.|.|...++... |..++.+.+|++|.+++|++... ...+..++.|+.
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~v-PeEL~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRs 82 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQV-PEELSRLQKLEHLSMAHNQLISV-HGELSDLPRLRS 82 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhC-hHHHHHHhhhhhhhhhhhhhHhh-hhhhccchhhHH
Confidence 4567788899999544477788888999999999999988754 67789999999999999997653 356778899999
Q ss_pred EEccCCccCc-cchHhhcCCCCCCeeeccccCCcCCC----CCCCCcEEEcCCCcccchhcccC-CCCCcceEeccCccc
Q 007693 193 LDLWGSQVSN-RGAAVLKMFPRLSFLNLAWTGVTKLP----NISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTF 266 (593)
Q Consensus 193 L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~l~----~l~~L~~L~l~~n~l~~l~~~~~-~~~~L~~L~l~~n~~ 266 (593)
+.+..|++.. -+|..+-.+..|+.|||++|+++..| ..+++-.|++|+|+|.+||..++ ++..|-.|++++|.+
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL 162 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL 162 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh
Confidence 9999998753 34566778899999999999998766 56788899999999999998888 899999999999999
Q ss_pred cchhhHHhhhcCCCccEEeccCCCcchh--hhcccCCCccEEEccCCCCC-hhHHHHHHhccCCCcEEEcCCCCCCCchH
Q 007693 267 INEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIG-DDSVEMVACVGANLRNLNLSNTRFSSAGV 343 (593)
Q Consensus 267 ~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~L~~n~l~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 343 (593)
...|+... .+..|++|++++|.+... ..+..+++|+.|.+++.+-+ +..|..+..+ .+|..++++.|.+...+-
T Consensus 163 e~LPPQ~R--RL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l-~NL~dvDlS~N~Lp~vPe 239 (1255)
T KOG0444|consen 163 EMLPPQIR--RLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDL-HNLRDVDLSENNLPIVPE 239 (1255)
T ss_pred hhcCHHHH--HHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhh-hhhhhccccccCCCcchH
Confidence 99888654 788999999999988766 66778888888999886532 2345555555 788899999988887655
Q ss_pred HHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCc
Q 007693 344 GILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQV 423 (593)
Q Consensus 344 ~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l 423 (593)
..+ .+++|+.|+|++|.|+.... ..+...+|++|++|.|+++..+. ++..+++|+.|.+.+|++
T Consensus 240 cly--~l~~LrrLNLS~N~iteL~~-~~~~W~~lEtLNlSrNQLt~LP~-------------avcKL~kL~kLy~n~NkL 303 (1255)
T KOG0444|consen 240 CLY--KLRNLRRLNLSGNKITELNM-TEGEWENLETLNLSRNQLTVLPD-------------AVCKLTKLTKLYANNNKL 303 (1255)
T ss_pred HHh--hhhhhheeccCcCceeeeec-cHHHHhhhhhhccccchhccchH-------------HHhhhHHHHHHHhccCcc
Confidence 443 58889999999998886432 24456788899999999876544 478888899999999876
Q ss_pred CC-CccccccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcccccCccCCCCCceEecCCCcc
Q 007693 424 SD-ATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL 495 (593)
Q Consensus 424 ~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~ 495 (593)
+- -+|..++.+.+|+.+..++|.+.- .|+.+..|++|+.|.|+.|++... |+++.-++.|+.||+..|+-
T Consensus 304 ~FeGiPSGIGKL~~Levf~aanN~LEl-VPEglcRC~kL~kL~L~~NrLiTL-PeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 304 TFEGIPSGIGKLIQLEVFHAANNKLEL-VPEGLCRCVKLQKLKLDHNRLITL-PEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred cccCCccchhhhhhhHHHHhhcccccc-CchhhhhhHHHHHhcccccceeec-hhhhhhcCCcceeeccCCcC
Confidence 52 367888899999999998888754 678888999999999999988765 77777788999999999875
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=2.1e-31 Score=261.29 Aligned_cols=363 Identities=21% Similarity=0.220 Sum_probs=302.7
Q ss_pred cCCCccEEEcCCCCccCchHHHhhhCCCCCcEEecCCCCCCChhhHHhhcCCCCCcEEEccCCCCChhHHHHhcCCCCCC
Q 007693 88 AFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLS 167 (593)
Q Consensus 88 ~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~ 167 (593)
-+|-.|-.|+++|..-.+..+..+..++.++.|.|.... ....|..++.+.+|++|.+++|++... ...++.++.|+
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~--L~~vPeEL~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LR 81 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTK--LEQVPEELSRLQKLEHLSMAHNQLISV-HGELSDLPRLR 81 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhh--hhhChHHHHHHhhhhhhhhhhhhhHhh-hhhhccchhhH
Confidence 356678899999985556677788899999999999873 345578899999999999999998764 34578899999
Q ss_pred EEEcCCCCCChh-hHHHhhcCCCCCEEEccCCccCccchHhhcCCCCCCeeeccccCCcCCC-----CCCCCcEEEcCCC
Q 007693 168 VLDLGGLPVTDL-VLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNC 241 (593)
Q Consensus 168 ~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~-----~l~~L~~L~l~~n 241 (593)
.+.+..|++... +|..+..+..|..|||++|++. +.|..+...+++-+|+|++|+|..+| +++.|-.|++|+|
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence 999999987542 4566778999999999999998 56778888999999999999999988 5788889999999
Q ss_pred cccchhcccCCCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcch--h-hhcccCCCccEEEccCCCCChhHH
Q 007693 242 TIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSR--F-CFLTQMKALEHLDLSSSMIGDDSV 318 (593)
Q Consensus 242 ~l~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~--~-~~l~~~~~L~~L~L~~n~l~~~~~ 318 (593)
++..+|+.+..+..|++|.+++|.+....-. ....+++|+.|.+++.+-+- + ..+..+.+|..+|++.|.+. ..|
T Consensus 161 rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLr-QLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vP 238 (1255)
T KOG0444|consen 161 RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLR-QLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVP 238 (1255)
T ss_pred hhhhcCHHHHHHhhhhhhhcCCChhhHHHHh-cCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cch
Confidence 9999999999999999999999987542211 12245677788888876433 3 56778899999999999998 577
Q ss_pred HHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCc-cccccccc
Q 007693 319 EMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKG-FIQQVGAE 397 (593)
Q Consensus 319 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~-~~~~~~~~ 397 (593)
+.+..+ ++|+.|++++|+++...... +.+.+|++|+++.|+++. .|.+++.++.|+.|.+.+|+++- -+|.
T Consensus 239 ecly~l-~~LrrLNLS~N~iteL~~~~--~~W~~lEtLNlSrNQLt~-LP~avcKL~kL~kLy~n~NkL~FeGiPS---- 310 (1255)
T KOG0444|consen 239 ECLYKL-RNLRRLNLSGNKITELNMTE--GEWENLETLNLSRNQLTV-LPDAVCKLTKLTKLYANNNKLTFEGIPS---- 310 (1255)
T ss_pred HHHhhh-hhhheeccCcCceeeeeccH--HHHhhhhhhccccchhcc-chHHHhhhHHHHHHHhccCcccccCCcc----
Confidence 777777 99999999999999876544 457899999999999986 56788999999999999998752 2344
Q ss_pred hhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcc
Q 007693 398 TDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS 474 (593)
Q Consensus 398 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 474 (593)
+++.+..|+++..++|.+.- +|+.+..|++|+.|.|++|++-. .|+++.-++.|+.||+..|.---.
T Consensus 311 --------GIGKL~~Levf~aanN~LEl-VPEglcRC~kL~kL~L~~NrLiT-LPeaIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 311 --------GIGKLIQLEVFHAANNKLEL-VPEGLCRCVKLQKLKLDHNRLIT-LPEAIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred --------chhhhhhhHHHHhhcccccc-CchhhhhhHHHHHhcccccceee-chhhhhhcCCcceeeccCCcCccC
Confidence 58999999999999998865 88999999999999999999876 688999999999999999874433
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.94 E-value=4.6e-29 Score=255.86 Aligned_cols=432 Identities=19% Similarity=0.225 Sum_probs=265.8
Q ss_pred HHhHhhhhcccccCchHHHHHHHHHHHHhccc------ChhhHhhhcCCccEEEecCCCCCChhHHHHHhcCCCccEEEc
Q 007693 24 VQKWRRQRRSLERLPAHLADSLLRHLIRRRLI------FPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNV 97 (593)
Q Consensus 24 ~~~~~~~~~~l~~lp~~l~~~~l~~l~~~~~~------~p~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L 97 (593)
++.++.+...+...|..+.. +.+|...+.. .|.... .+.+++++.|..|. ....|..+..+++|++|++
T Consensus 47 L~~l~lsnn~~~~fp~~it~--l~~L~~ln~s~n~i~~vp~s~~-~~~~l~~lnL~~n~--l~~lP~~~~~lknl~~Ldl 121 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITL--LSHLRQLNLSRNYIRSVPSSCS-NMRNLQYLNLKNNR--LQSLPASISELKNLQYLDL 121 (1081)
T ss_pred eEEeeccccccccCCchhhh--HHHHhhcccchhhHhhCchhhh-hhhcchhheeccch--hhcCchhHHhhhccccccc
Confidence 56777788888888877766 3443322221 121111 12344555554442 2233444444455555555
Q ss_pred CCCCccCchHHHhhhCCCCCcEEecCCCCCCChhhHHhhcCCCCCcEEEccCCCCChhHHHHhcCCCCCCEEEcCCCCCC
Q 007693 98 ADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVT 177 (593)
Q Consensus 98 ~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~ 177 (593)
+.|. +.. .+..+..+..+..+..++|.. ...++.. .++.+++..|.+.+..+..+..++. .|+|.+|.+.
T Consensus 122 S~N~-f~~-~Pl~i~~lt~~~~~~~s~N~~-----~~~lg~~-~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~ 191 (1081)
T KOG0618|consen 122 SFNH-FGP-IPLVIEVLTAEEELAASNNEK-----IQRLGQT-SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME 191 (1081)
T ss_pred chhc-cCC-CchhHHhhhHHHHHhhhcchh-----hhhhccc-cchhhhhhhhhcccchhcchhhhhe--eeecccchhh
Confidence 5444 222 122222333333333333310 0011111 1444555555444444433334433 4666666554
Q ss_pred hhhHHHhhcC--------------------CCCCEEEccCCccCccchHhhcCCCCCCeeeccccCCcCCC----CCCCC
Q 007693 178 DLVLRSLQVL--------------------TKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP----NISSL 233 (593)
Q Consensus 178 ~~~~~~l~~l--------------------~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~----~l~~L 233 (593)
.. .+.++ ++|+.|+.++|.++... .-..-.+|+.+++++|.++.+| .+.+|
T Consensus 192 ~~---dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~--~~p~p~nl~~~dis~n~l~~lp~wi~~~~nl 266 (1081)
T KOG0618|consen 192 VL---DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLD--VHPVPLNLQYLDISHNNLSNLPEWIGACANL 266 (1081)
T ss_pred hh---hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeec--cccccccceeeecchhhhhcchHHHHhcccc
Confidence 21 12222 34445555555444211 1122357888888888888776 57888
Q ss_pred cEEEcCCCcccchhcccCCCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcchhh--hcccCC-CccEEEccC
Q 007693 234 ECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFC--FLTQMK-ALEHLDLSS 310 (593)
Q Consensus 234 ~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~--~l~~~~-~L~~L~L~~ 310 (593)
+.+++.+|.+..+|..++...+|+.|.+..|.+..+++... ....|++|++..|++..++ .+.... .++.|+.+.
T Consensus 267 e~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le--~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~ 344 (1081)
T KOG0618|consen 267 EALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLE--GLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSS 344 (1081)
T ss_pred eEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCccc--ccceeeeeeehhccccccchHHHhhhhHHHHHHhhhh
Confidence 88888888888888888888888888888888888777543 5788888888888887772 233332 366677777
Q ss_pred CCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCcc
Q 007693 311 SMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGF 390 (593)
Q Consensus 311 n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~ 390 (593)
|.+.... ..-....+.|+.|.+.+|.+++.....+ .++++|+.|+|++|++...+...+.+++.|++|+||||+++..
T Consensus 345 n~l~~lp-~~~e~~~~~Lq~LylanN~Ltd~c~p~l-~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~L 422 (1081)
T KOG0618|consen 345 NKLSTLP-SYEENNHAALQELYLANNHLTDSCFPVL-VNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTL 422 (1081)
T ss_pred ccccccc-cccchhhHHHHHHHHhcCcccccchhhh-ccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhh
Confidence 7665432 1111122668888888888888777766 4678888888888888877777788888888888888888765
Q ss_pred ccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcc
Q 007693 391 IQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAV 470 (593)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 470 (593)
+. .+..++.|++|...+|.+.. .| .+..+++|+.+|++.|.++......-...++|++||++||.
T Consensus 423 p~-------------tva~~~~L~tL~ahsN~l~~-fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 423 PD-------------TVANLGRLHTLRAHSNQLLS-FP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hH-------------HHHhhhhhHHHhhcCCceee-ch-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 53 47788888888888888876 44 77788888888888888877544333334788888888887
Q ss_pred cCcccccCccCCCCCceEecCCCc
Q 007693 471 LTNSGLGSFKPPRSLKLLDLHGGW 494 (593)
Q Consensus 471 l~~~~~~~~~~~~~L~~L~l~~n~ 494 (593)
=....-..|..+.++...++.-++
T Consensus 488 ~l~~d~~~l~~l~~l~~~~i~~~~ 511 (1081)
T KOG0618|consen 488 RLVFDHKTLKVLKSLSQMDITLNN 511 (1081)
T ss_pred ccccchhhhHHhhhhhheecccCC
Confidence 544555566666777777776664
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.91 E-value=9.7e-27 Score=217.21 Aligned_cols=430 Identities=18% Similarity=0.132 Sum_probs=266.0
Q ss_pred HhHhhhhcccccCchHHHHHHHHHHHHhcccChhhHhhhcCCccEEEecCCCCCChhHHHHHhcCCCccEEEcCCCCccC
Q 007693 25 QKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVT 104 (593)
Q Consensus 25 ~~~~~~~~~l~~lp~~l~~~~l~~l~~~~~~~p~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~ 104 (593)
-.++|+..++.++|.++|++ .+.++|..|. ++..-+.+|+.+++||.|||++|. |+
T Consensus 49 ~~VdCr~~GL~eVP~~LP~~----------------------tveirLdqN~-I~~iP~~aF~~l~~LRrLdLS~N~-Is 104 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPANLPPE----------------------TVEIRLDQNQ-ISSIPPGAFKTLHRLRRLDLSKNN-IS 104 (498)
T ss_pred ceEEccCCCcccCcccCCCc----------------------ceEEEeccCC-cccCChhhccchhhhceecccccc-hh
Confidence 46889999999999999984 7899999997 777778899999999999999988 99
Q ss_pred chHHHhhhCCCCCcEEecCCCCCCChhhHHhhcCCCCCcEEEccCCCCChhHHHHhcCCCCCCEEEcCCCCCChhhHHHh
Q 007693 105 SSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSL 184 (593)
Q Consensus 105 ~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l 184 (593)
.+.+++|.+++.|..|-+.++..+++..-..|+++..|+-|.+.-|++......+|..+++|..|.+..|.+..+.-..|
T Consensus 105 ~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf 184 (498)
T KOG4237|consen 105 FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTF 184 (498)
T ss_pred hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccc
Confidence 99999999999999999988668888888888899999999998888888888888889999999998888876666677
Q ss_pred hcCCCCCEEEccCCccCccchHhhcCCCCCCeeeccccCCcCCCCCCCCcEEEcCCCcccchhcccCCCC--CcceEecc
Q 007693 185 QVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKA--PLAKISLA 262 (593)
Q Consensus 185 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~l~~n~l~~l~~~~~~~~--~L~~L~l~ 262 (593)
..+..++.+.+..|.+-. ..+++.+... +..+.+ .++.........+.+.++..+.+.-+.+. .+.+=..+
T Consensus 185 ~~l~~i~tlhlA~np~ic-----dCnL~wla~~-~a~~~i-etsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~ 257 (498)
T KOG4237|consen 185 QGLAAIKTLHLAQNPFIC-----DCNLPWLADD-LAMNPI-ETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSS 257 (498)
T ss_pred cchhccchHhhhcCcccc-----ccccchhhhH-Hhhchh-hcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhcc
Confidence 788888888877665211 0111111100 000000 00111111111222222222222211111 11111112
Q ss_pred CccccchhhHHhhhcCCCccEEeccCCCcchh--hhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCC
Q 007693 263 GTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS 340 (593)
Q Consensus 263 ~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~ 340 (593)
.+....+-+...|..+++|++|++++|.++.+ .+|.....+++|.|..|++....-..+.++ ..|+.|+|.+|+|+.
T Consensus 258 ~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~l-s~L~tL~L~~N~it~ 336 (498)
T KOG4237|consen 258 EDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGL-SGLKTLSLYDNQITT 336 (498)
T ss_pred ccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhcc-ccceeeeecCCeeEE
Confidence 22233333444566777777777777777777 567777777777777777776666666665 777777777777777
Q ss_pred chHHHHHcCCCCCcEEEccCCCCCh-H----HHHHhh-----------cCCCCCEEEeeCCccCccccccccchhhhhhH
Q 007693 341 AGVGILAGHLPNLEILSLSGTQIDD-Y----AISYMS-----------MMPSLKFIDISNTDIKGFIQQVGAETDLVLSL 404 (593)
Q Consensus 341 ~~~~~~~~~~~~L~~L~l~~n~i~~-~----~~~~l~-----------~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~ 404 (593)
..+.+| ....+|.+|++-.|.+.- . ..+++. ....++.+.++...+....-...-+.+-.+.-
T Consensus 337 ~~~~aF-~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~ 415 (498)
T KOG4237|consen 337 VAPGAF-QTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSS 415 (498)
T ss_pred Eecccc-cccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCC
Confidence 777665 456677777777665431 1 111111 12345555555554432211100000000000
Q ss_pred HhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcccccCccCCCC
Q 007693 405 TALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRS 484 (593)
Q Consensus 405 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 484 (593)
..-..++-+.+..=-.|+.....|..+ ......|++.+|.++.+..+ .+.+| .+|+++|+|+...-..|.++++
T Consensus 416 ~cP~~c~c~~tVvRcSnk~lk~lp~~i--P~d~telyl~gn~~~~vp~~---~~~~l-~~dls~n~i~~Lsn~tf~n~tq 489 (498)
T KOG4237|consen 416 PCPPPCTCLDTVVRCSNKLLKLLPRGI--PVDVTELYLDGNAITSVPDE---LLRSL-LLDLSNNRISSLSNYTFSNMTQ 489 (498)
T ss_pred CCCCCcchhhhhHhhcccchhhcCCCC--CchhHHHhcccchhcccCHH---HHhhh-hcccccCceehhhcccccchhh
Confidence 001112222222111122222233322 12356788888888875544 45666 8888888888877778888888
Q ss_pred CceEecCCC
Q 007693 485 LKLLDLHGG 493 (593)
Q Consensus 485 L~~L~l~~n 493 (593)
|..|-|++|
T Consensus 490 l~tlilsyn 498 (498)
T KOG4237|consen 490 LSTLILSYN 498 (498)
T ss_pred hheeEEecC
Confidence 888888765
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.86 E-value=5.9e-24 Score=198.73 Aligned_cols=302 Identities=18% Similarity=0.180 Sum_probs=205.3
Q ss_pred CCcEEEccCCCCChhHHHHhcCCCCCCEEEcCCCCCChhhHHHhhcCCCCCEEEccC-CccCccchHhhcCCCCCCeeec
Q 007693 141 TLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWG-SQVSNRGAAVLKMFPRLSFLNL 219 (593)
Q Consensus 141 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~l 219 (593)
.-..++|..|+|+.+++.+|+.+++|++|||++|.|+.+.|.+|.++++|..|-+.+ |+|+.....+|+.+.
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~------- 140 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLS------- 140 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHH-------
Confidence 445666777777777777777777777777777777777777776666666555544 556555555555443
Q ss_pred cccCCcCCCCCCCCcEEEcCCCcccchhcccCCCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcchh--hhc
Q 007693 220 AWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFL 297 (593)
Q Consensus 220 ~~n~l~~l~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~l 297 (593)
.++.|.+.-|++..+... .+..++++..|.+.+|.+..+ ..+
T Consensus 141 -----------------------------------slqrLllNan~i~Cir~~-al~dL~~l~lLslyDn~~q~i~~~tf 184 (498)
T KOG4237|consen 141 -----------------------------------SLQRLLLNANHINCIRQD-ALRDLPSLSLLSLYDNKIQSICKGTF 184 (498)
T ss_pred -----------------------------------HHHHHhcChhhhcchhHH-HHHHhhhcchhcccchhhhhhccccc
Confidence 344444444444444433 356788888888888888877 467
Q ss_pred ccCCCccEEEccCCCCChhHHHHHHhccCCCcEE--EcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhh-cC
Q 007693 298 TQMKALEHLDLSSSMIGDDSVEMVACVGANLRNL--NLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMS-MM 374 (593)
Q Consensus 298 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L--~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~-~~ 374 (593)
..+..++++.+..|.+-.. .+|+.+ ++..+.+. .++.....-..+.+.++..+....|. ..
T Consensus 185 ~~l~~i~tlhlA~np~icd---------CnL~wla~~~a~~~ie-------tsgarc~~p~rl~~~Ri~q~~a~kf~c~~ 248 (498)
T KOG4237|consen 185 QGLAAIKTLHLAQNPFICD---------CNLPWLADDLAMNPIE-------TSGARCVSPYRLYYKRINQEDARKFLCSL 248 (498)
T ss_pred cchhccchHhhhcCccccc---------cccchhhhHHhhchhh-------cccceecchHHHHHHHhcccchhhhhhhH
Confidence 8888888888887763211 122211 00011100 01122222223333333333333222 12
Q ss_pred CCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHh
Q 007693 375 PSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQ 454 (593)
Q Consensus 375 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 454 (593)
.++..--.+.+...+.-|. ..|+.+++|++|+|++|+++.+-..+|.....++.|.|..|+|..+....
T Consensus 249 esl~s~~~~~d~~d~~cP~-----------~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~ 317 (498)
T KOG4237|consen 249 ESLPSRLSSEDFPDSICPA-----------KCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGM 317 (498)
T ss_pred HhHHHhhccccCcCCcChH-----------HHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHh
Confidence 2222222333444444443 26999999999999999999999999999999999999999999988889
Q ss_pred hhcCCCCcEEEecCcccCcccccCccCCCCCceEecCCCccCCHHHHHHHHhhCCcEE
Q 007693 455 LSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIE 512 (593)
Q Consensus 455 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~ 512 (593)
|.++..|+.|+|.+|+|+.+.+.+|..+.+|..|.+-.|++.|+|.+.|+..|+..-.
T Consensus 318 f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~ 375 (498)
T KOG4237|consen 318 FQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKS 375 (498)
T ss_pred hhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCC
Confidence 9999999999999999999999999999999999999999999999999999986544
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=7.9e-21 Score=217.45 Aligned_cols=195 Identities=20% Similarity=0.157 Sum_probs=106.4
Q ss_pred HHHHhcCCCccEEEcCCCC-----ccCchHHHhhhCC-CCCcEEecCCCCCCChhhHHhhcCCCCCcEEEccCCCCChhH
Q 007693 83 MAYLGAFRYLRSLNVADCR-----RVTSSALWALTGM-TCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADG 156 (593)
Q Consensus 83 ~~~~~~~~~L~~L~L~~~~-----~i~~~~~~~l~~l-~~L~~L~L~~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~ 156 (593)
...|.++++|+.|.+..+. .+....+..+..+ ++|+.|++.++. +.. .+..+ ...+|++|++.++++...
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~-l~~-lP~~f-~~~~L~~L~L~~s~l~~L- 626 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP-LRC-MPSNF-RPENLVKLQMQGSKLEKL- 626 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC-CCC-CCCcC-CccCCcEEECcCcccccc-
Confidence 3456677777777775432 0111122233333 357777777662 222 22223 456777777777766543
Q ss_pred HHHhcCCCCCCEEEcCCCCCChhhHHHhhcCCCCCEEEccCCccCccchHhhcCCCCCCeeecccc-CCcCCC---CCCC
Q 007693 157 IALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWT-GVTKLP---NISS 232 (593)
Q Consensus 157 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~l~---~l~~ 232 (593)
+..+..+++|+.|+++++......| .+..+++|+.|++++|......|..+..+++|+.|++++| .+..+| ++++
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~s 705 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKS 705 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCC
Confidence 3345567777777777654333333 3566677777777776555556666667777777777664 344444 3556
Q ss_pred CcEEEcCCCccc-chhcccCCCCCcceEeccCccccchhhHHhhhcCCCccEEeccC
Q 007693 233 LECLNLSNCTID-SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSN 288 (593)
Q Consensus 233 L~~L~l~~n~l~-~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~ 288 (593)
|+.|++++|... .+|. ...+|++|++++|.+..+|... .+++|++|.+.+
T Consensus 706 L~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~lP~~~---~l~~L~~L~l~~ 756 (1153)
T PLN03210 706 LYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEEFPSNL---RLENLDELILCE 756 (1153)
T ss_pred CCEEeCCCCCCcccccc---ccCCcCeeecCCCccccccccc---cccccccccccc
Confidence 666666665422 2322 1345566666666555554432 344555555544
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=3.2e-21 Score=204.82 Aligned_cols=233 Identities=20% Similarity=0.159 Sum_probs=96.5
Q ss_pred CCeeeccccCCcCCCC-CCCCcEEEcCCCcccchhcccCCCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcc
Q 007693 214 LSFLNLAWTGVTKLPN-ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLS 292 (593)
Q Consensus 214 L~~L~l~~n~l~~l~~-l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~ 292 (593)
|+.|++.+|.++.+|. +++|++|++++|+++.+|.. .++|++|++++|.+..++.. ..+|+.|++++|.++
T Consensus 224 L~~L~L~~N~Lt~LP~lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~l-----p~~L~~L~Ls~N~Lt 295 (788)
T PRK15387 224 ITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPAL-----PSGLCKLWIFGNQLT 295 (788)
T ss_pred CCEEEccCCcCCCCCCCCCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhc-----hhhcCEEECcCCccc
Confidence 4444444444444332 23444444444444444321 23444444444444433321 133444444444444
Q ss_pred hhhhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhh
Q 007693 293 RFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMS 372 (593)
Q Consensus 293 ~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~ 372 (593)
.++. .+++|++|++++|.+++... ...+|+.|++++|.+++.+. ..++|++|++++|++++.++
T Consensus 296 ~LP~--~p~~L~~LdLS~N~L~~Lp~-----lp~~L~~L~Ls~N~L~~LP~-----lp~~Lq~LdLS~N~Ls~LP~---- 359 (788)
T PRK15387 296 SLPV--LPPGLQELSVSDNQLASLPA-----LPSELCKLWAYNNQLTSLPT-----LPSGLQELSVSDNQLASLPT---- 359 (788)
T ss_pred cccc--cccccceeECCCCccccCCC-----CcccccccccccCccccccc-----cccccceEecCCCccCCCCC----
Confidence 4322 12344445554444443210 11334444455444443221 01245555555554443221
Q ss_pred cCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhH
Q 007693 373 MMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSL 452 (593)
Q Consensus 373 ~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 452 (593)
..++|+.|++++|++...+.. ..+|+.|++++|.++. +|.. .++|+.|++++|+++.+ |
T Consensus 360 lp~~L~~L~Ls~N~L~~LP~l----------------~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~LssI-P 418 (788)
T PRK15387 360 LPSELYKLWAYNNRLTSLPAL----------------PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTSL-P 418 (788)
T ss_pred CCcccceehhhccccccCccc----------------ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCCC-C
Confidence 123444455555554432111 1234555555555543 2211 23455555555555442 2
Q ss_pred HhhhcCCCCcEEEecCcccCcccccCccCCCCCceEecCCCcc
Q 007693 453 HQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL 495 (593)
Q Consensus 453 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~ 495 (593)
.. ..+|+.|++++|+|+.+ |..+..+++|+.|+|++|++
T Consensus 419 ~l---~~~L~~L~Ls~NqLt~L-P~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 419 ML---PSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred cc---hhhhhhhhhccCccccc-ChHHhhccCCCeEECCCCCC
Confidence 11 12344555555555532 33444445555555555554
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=6.2e-21 Score=202.67 Aligned_cols=264 Identities=18% Similarity=0.186 Sum_probs=214.5
Q ss_pred CCCCEEEcCCCCCChhhHHHhhcCCCCCEEEccCCccCccchHhhcCCCCCCeeeccccCCcCCCC-CCCCcEEEcCCCc
Q 007693 164 QNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN-ISSLECLNLSNCT 242 (593)
Q Consensus 164 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~-l~~L~~L~l~~n~ 242 (593)
..-..|+++.+.++. .|..+. ++|+.|++.+|+++... . ..++|++|++++|.++.+|. .++|+.|++++|.
T Consensus 201 ~~~~~LdLs~~~Lts-LP~~l~--~~L~~L~L~~N~Lt~LP-~---lp~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~ 273 (788)
T PRK15387 201 NGNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLTSLP-A---LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNP 273 (788)
T ss_pred CCCcEEEcCCCCCCc-CCcchh--cCCCEEEccCCcCCCCC-C---CCCCCcEEEecCCccCcccCcccccceeeccCCc
Confidence 567889999999985 455554 48999999999998643 2 35899999999999999874 4789999999999
Q ss_pred ccchhcccCCCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcchhhhcccCCCccEEEccCCCCChhHHHHHH
Q 007693 243 IDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVA 322 (593)
Q Consensus 243 l~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~ 322 (593)
+..+|.. ..+|+.|++++|.+..+|.. .++|+.|++++|.++.++.+ ...|+.|++++|.+++..
T Consensus 274 L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~-----p~~L~~LdLS~N~L~~Lp~l--p~~L~~L~Ls~N~L~~LP----- 338 (788)
T PRK15387 274 LTHLPAL---PSGLCKLWIFGNQLTSLPVL-----PPGLQELSVSDNQLASLPAL--PSELCKLWAYNNQLTSLP----- 338 (788)
T ss_pred hhhhhhc---hhhcCEEECcCCcccccccc-----ccccceeECCCCccccCCCC--cccccccccccCcccccc-----
Confidence 9988763 36789999999999988752 47899999999999987543 357899999999998532
Q ss_pred hccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhh
Q 007693 323 CVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVL 402 (593)
Q Consensus 323 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 402 (593)
....+|+.|++++|++++.+. ..++|+.|++++|.++..+ . ..++|+.|++++|++.+.+..
T Consensus 339 ~lp~~Lq~LdLS~N~Ls~LP~-----lp~~L~~L~Ls~N~L~~LP-~---l~~~L~~LdLs~N~Lt~LP~l--------- 400 (788)
T PRK15387 339 TLPSGLQELSVSDNQLASLPT-----LPSELYKLWAYNNRLTSLP-A---LPSGLKELIVSGNRLTSLPVL--------- 400 (788)
T ss_pred ccccccceEecCCCccCCCCC-----CCcccceehhhccccccCc-c---cccccceEEecCCcccCCCCc---------
Confidence 122689999999999997653 2468999999999998643 2 246899999999999864432
Q ss_pred hHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcccccCc
Q 007693 403 SLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSF 479 (593)
Q Consensus 403 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 479 (593)
.++|+.|++++|.++. +|.. ..+|+.|++++|+++. +|..+..+++|+.|++++|++++..+..+
T Consensus 401 -------~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt~-LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 401 -------PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred -------ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCcccc-cChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 2579999999999987 4543 3578999999999996 57789999999999999999998766655
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.83 E-value=1.4e-19 Score=207.36 Aligned_cols=334 Identities=17% Similarity=0.139 Sum_probs=239.7
Q ss_pred HHhhcCCCCCcEEEccCCCCC------hhHHHHhcCC-CCCCEEEcCCCCCChhhHHHhhcCCCCCEEEccCCccCccch
Q 007693 133 MKHLLSISTLEKLWLSETGLT------ADGIALLSSL-QNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGA 205 (593)
Q Consensus 133 ~~~l~~~~~L~~L~L~~~~~~------~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 205 (593)
...|.++++|+.|.+..+... ...+..|..+ ++|+.|.+.++.+... |..| ...+|+.|++.+|.+.. .+
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~l-P~~f-~~~~L~~L~L~~s~l~~-L~ 627 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCM-PSNF-RPENLVKLQMQGSKLEK-LW 627 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCC-CCcC-CccCCcEEECcCccccc-cc
Confidence 455778888888888665322 1223334444 4688898888876543 4444 46789999999888764 45
Q ss_pred HhhcCCCCCCeeeccccC-CcCCC---CCCCCcEEEcCCCc-ccchhcccCCCCCcceEeccCcc-ccchhhHHhhhcCC
Q 007693 206 AVLKMFPRLSFLNLAWTG-VTKLP---NISSLECLNLSNCT-IDSILEGNENKAPLAKISLAGTT-FINEREAFLYIETS 279 (593)
Q Consensus 206 ~~l~~l~~L~~L~l~~n~-l~~l~---~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~ 279 (593)
..+..+++|+.++++++. +..+| .+++|+.|++++|. +..+|..+..+++|+.|++++|. +..+|... +++
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i---~l~ 704 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI---NLK 704 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC---CCC
Confidence 566788899999998763 44444 67889999998875 55788888889999999999874 44455432 678
Q ss_pred CccEEeccCCCcc-hhhhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCC-------CchHHHHHcCCC
Q 007693 280 LLSFLDVSNSSLS-RFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFS-------SAGVGILAGHLP 351 (593)
Q Consensus 280 ~L~~L~ls~n~l~-~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~-------~~~~~~~~~~~~ 351 (593)
+|+.|++++|... .++. ..++|++|++++|.+... +..+ .+ ++|++|.+.++... ...+. ....++
T Consensus 705 sL~~L~Lsgc~~L~~~p~--~~~nL~~L~L~~n~i~~l-P~~~-~l-~~L~~L~l~~~~~~~l~~~~~~l~~~-~~~~~~ 778 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFPD--ISTNISWLDLDETAIEEF-PSNL-RL-ENLDELILCEMKSEKLWERVQPLTPL-MTMLSP 778 (1153)
T ss_pred CCCEEeCCCCCCcccccc--ccCCcCeeecCCCccccc-cccc-cc-cccccccccccchhhccccccccchh-hhhccc
Confidence 8999999988532 2232 246888999999887643 2222 22 78888888764321 11111 113457
Q ss_pred CCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccc
Q 007693 352 NLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPL 431 (593)
Q Consensus 352 ~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 431 (593)
+|+.|++++|......|..++++++|+.|++++|...+.+|. .. .+++|+.|++++|......|..
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~------------~~-~L~sL~~L~Ls~c~~L~~~p~~- 844 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT------------GI-NLESLESLDLSGCSRLRTFPDI- 844 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC------------CC-CccccCEEECCCCCcccccccc-
Confidence 899999999987777788899999999999999875555555 22 6889999999998654434432
Q ss_pred cCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecC-cccCcccccCccCCCCCceEecCCCccC
Q 007693 432 STFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRD-AVLTNSGLGSFKPPRSLKLLDLHGGWLL 496 (593)
Q Consensus 432 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~L~~L~l~~n~~~ 496 (593)
.++|+.|+|++|.++. .|..+..+++|+.|++++ +++..+ +..+..+++|+.+++++|.-.
T Consensus 845 --~~nL~~L~Ls~n~i~~-iP~si~~l~~L~~L~L~~C~~L~~l-~~~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 845 --STNISDLNLSRTGIEE-VPWWIEKFSNLSFLDMNGCNNLQRV-SLNISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred --ccccCEeECCCCCCcc-ChHHHhcCCCCCEEECCCCCCcCcc-CcccccccCCCeeecCCCccc
Confidence 4679999999999987 577899999999999999 456654 556677889999999999643
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.80 E-value=9.6e-19 Score=174.41 Aligned_cols=107 Identities=21% Similarity=0.177 Sum_probs=64.1
Q ss_pred EEEcCCCCccC-chHHHhhhCCCCCcEEecCCCCCCChhhH----HhhcCCCCCcEEEccCCCCCh------hHHHHhcC
Q 007693 94 SLNVADCRRVT-SSALWALTGMTCLKELDLSRCVKVTDAGM----KHLLSISTLEKLWLSETGLTA------DGIALLSS 162 (593)
Q Consensus 94 ~L~L~~~~~i~-~~~~~~l~~l~~L~~L~L~~~~~l~~~~~----~~l~~~~~L~~L~L~~~~~~~------~~~~~l~~ 162 (593)
.|+|.++. ++ ......+..+.+|++|++++| .+++... ..+...+.|++++++++.+.+ ..+..+..
T Consensus 2 ~l~L~~~~-l~~~~~~~~~~~l~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~ 79 (319)
T cd00116 2 QLSLKGEL-LKTERATELLPKLLCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK 79 (319)
T ss_pred ccccccCc-ccccchHHHHHHHhhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHh
Confidence 45666555 44 333344556677888888887 4544433 234456667788877776652 22334556
Q ss_pred CCCCCEEEcCCCCCChhhHHHhhcCCC---CCEEEccCCccCc
Q 007693 163 LQNLSVLDLGGLPVTDLVLRSLQVLTK---LEYLDLWGSQVSN 202 (593)
Q Consensus 163 l~~L~~L~L~~n~l~~~~~~~l~~l~~---L~~L~L~~n~l~~ 202 (593)
+++|+.|++++|.+.+..+..+..+.+ |++|++++|.+++
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~ 122 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGD 122 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccch
Confidence 677777777777766544555544443 7777777766653
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.79 E-value=4.1e-18 Score=169.89 Aligned_cols=279 Identities=26% Similarity=0.267 Sum_probs=154.7
Q ss_pred EEEecCCCCCChhHHHHHhcCCCccEEEcCCCCccCchHHH----hhhCCCCCcEEecCCCCCCC------hhhHHhhcC
Q 007693 69 AIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALW----ALTGMTCLKELDLSRCVKVT------DAGMKHLLS 138 (593)
Q Consensus 69 ~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~----~l~~l~~L~~L~L~~~~~l~------~~~~~~l~~ 138 (593)
.|+|..+......+...+..+.+|++|++++|. +++.... .+...+.|++|+++++. +. ...+..+..
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~-l~~~~~~~i~~~l~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~ 79 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNT-LGEEAAKALASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQGLTK 79 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCC-CcHHHHHHHHHHHhhCCCceEEeccccc-cCCcchHHHHHHHHHHh
Confidence 356666553335666666777778888887776 5443322 23355667777777763 33 112244556
Q ss_pred CCCCcEEEccCCCCChhHHHHhcCCCC---CCEEEcCCCCCChhh----HHHhhcC-CCCCEEEccCCccCccch----H
Q 007693 139 ISTLEKLWLSETGLTADGIALLSSLQN---LSVLDLGGLPVTDLV----LRSLQVL-TKLEYLDLWGSQVSNRGA----A 206 (593)
Q Consensus 139 ~~~L~~L~L~~~~~~~~~~~~l~~l~~---L~~L~L~~n~l~~~~----~~~l~~l-~~L~~L~L~~n~l~~~~~----~ 206 (593)
+++|++|++++|.+....+..+..+.+ |++|++++|.+.+.. ...+..+ ++|+.|++++|.+++... .
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 778888888887776555544444443 888888887776422 2334455 777888888877774322 2
Q ss_pred hhcCCCCCCeeeccccCCcCCCCCCCCcEEEcCCCcccchhcccCCCCCcceEeccCccccchhhH---HhhhcCCCccE
Q 007693 207 VLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREA---FLYIETSLLSF 283 (593)
Q Consensus 207 ~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~~~~~~~~---~~~~~~~~L~~ 283 (593)
.+..+++|++|++++|.++.- .+..++..+...++|+.|++++|.+.+.... ..+..+++|++
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~--------------~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~ 225 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDA--------------GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEV 225 (319)
T ss_pred HHHhCCCcCEEECcCCCCchH--------------HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCE
Confidence 334444555555554443310 0001222222334444444544444322110 11234566666
Q ss_pred EeccCCCcchh--hhc-c----cCCCccEEEccCCCCChhHHHHHHhcc---CCCcEEEcCCCCCCCchHHHHH---cCC
Q 007693 284 LDVSNSSLSRF--CFL-T----QMKALEHLDLSSSMIGDDSVEMVACVG---ANLRNLNLSNTRFSSAGVGILA---GHL 350 (593)
Q Consensus 284 L~ls~n~l~~~--~~l-~----~~~~L~~L~L~~n~l~~~~~~~~~~~~---~~L~~L~l~~n~l~~~~~~~~~---~~~ 350 (593)
|++++|.+++. ..+ . ..+.|++|++++|.+++.....+...+ ++|+++++++|.+++.+...+. ...
T Consensus 226 L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~ 305 (319)
T cd00116 226 LNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEP 305 (319)
T ss_pred EecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhc
Confidence 66666666542 111 1 236788888888887754443332221 5788888888888766433322 223
Q ss_pred -CCCcEEEccCCCC
Q 007693 351 -PNLEILSLSGTQI 363 (593)
Q Consensus 351 -~~L~~L~l~~n~i 363 (593)
+.|+++++.+|.+
T Consensus 306 ~~~~~~~~~~~~~~ 319 (319)
T cd00116 306 GNELESLWVKDDSF 319 (319)
T ss_pred CCchhhcccCCCCC
Confidence 5788888877653
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.76 E-value=2.6e-18 Score=184.04 Aligned_cols=224 Identities=15% Similarity=0.148 Sum_probs=111.8
Q ss_pred CCcEEEcCCCcccchhcccCCCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcchhhhcccCCCccEEEccCC
Q 007693 232 SLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSS 311 (593)
Q Consensus 232 ~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~L~~n 311 (593)
.++.|++++|.++.+|..+. ++|++|++++|.+..+|..+. ++|+.|++++|.+..++.- ...+|+.|++++|
T Consensus 200 ~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~----~~L~~L~Ls~N~L~~LP~~-l~s~L~~L~Ls~N 272 (754)
T PRK15370 200 QITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP----DTIQEMELSINRITELPER-LPSALQSLDLFHN 272 (754)
T ss_pred CCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh----ccccEEECcCCccCcCChh-HhCCCCEEECcCC
Confidence 34444444444444443332 244555555554444443221 3455555555555444210 1134555555555
Q ss_pred CCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccc
Q 007693 312 MIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFI 391 (593)
Q Consensus 312 ~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~ 391 (593)
.++.. +..+ +++|+.|++++|+++..+.. + .++|+.|++++|.++..+. .+ .++|+.|++++|.+++.+
T Consensus 273 ~L~~L-P~~l---~~sL~~L~Ls~N~Lt~LP~~-l---p~sL~~L~Ls~N~Lt~LP~-~l--~~sL~~L~Ls~N~Lt~LP 341 (754)
T PRK15370 273 KISCL-PENL---PEELRYLSVYDNSIRTLPAH-L---PSGITHLNVQSNSLTALPE-TL--PPGLKTLEAGENALTSLP 341 (754)
T ss_pred ccCcc-cccc---CCCCcEEECCCCccccCccc-c---hhhHHHHHhcCCccccCCc-cc--cccceeccccCCccccCC
Confidence 55532 2211 14566666666655543321 1 1346666666666654321 11 246666666666665532
Q ss_pred cccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCccc
Q 007693 392 QQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVL 471 (593)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 471 (593)
.. + .++|+.|++++|+++. +|..+ .++|+.|++++|+++.+++ .+. .+|+.|++++|++
T Consensus 342 ~~-------------l--~~sL~~L~Ls~N~L~~-LP~~l--p~~L~~LdLs~N~Lt~LP~-~l~--~sL~~LdLs~N~L 400 (754)
T PRK15370 342 AS-------------L--PPELQVLDVSKNQITV-LPETL--PPTITTLDVSRNALTNLPE-NLP--AALQIMQASRNNL 400 (754)
T ss_pred hh-------------h--cCcccEEECCCCCCCc-CChhh--cCCcCEEECCCCcCCCCCH-hHH--HHHHHHhhccCCc
Confidence 22 2 1466667777666664 33333 2466777777777665433 332 2566677777776
Q ss_pred CcccccC----ccCCCCCceEecCCCcc
Q 007693 472 TNSGLGS----FKPPRSLKLLDLHGGWL 495 (593)
Q Consensus 472 ~~~~~~~----~~~~~~L~~L~l~~n~~ 495 (593)
+.. |.. +..++.+..|++.+|++
T Consensus 401 ~~L-P~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 401 VRL-PESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred ccC-chhHHHHhhcCCCccEEEeeCCCc
Confidence 654 222 22236666777777776
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.74 E-value=6.6e-18 Score=180.98 Aligned_cols=245 Identities=16% Similarity=0.180 Sum_probs=111.1
Q ss_pred CCCEEEcCCCCCChhhHHHhhcCCCCCEEEccCCccCccchHhhcCCCCCCeeeccccCCcCCCC--CCCCcEEEcCCCc
Q 007693 165 NLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN--ISSLECLNLSNCT 242 (593)
Q Consensus 165 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~--l~~L~~L~l~~n~ 242 (593)
+...|+++++.++.. |..+ .++|+.|++++|.++.... .+. ++|+.|++++|.++.+|. .+.|+.|++++|.
T Consensus 179 ~~~~L~L~~~~LtsL-P~~I--p~~L~~L~Ls~N~LtsLP~-~l~--~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~ 252 (754)
T PRK15370 179 NKTELRLKILGLTTI-PACI--PEQITTLILDNNELKSLPE-NLQ--GNIKTLYANSNQLTSIPATLPDTIQEMELSINR 252 (754)
T ss_pred CceEEEeCCCCcCcC-Cccc--ccCCcEEEecCCCCCcCCh-hhc--cCCCEEECCCCccccCChhhhccccEEECcCCc
Confidence 455666666555532 2222 1356666666666553322 221 345555555555554441 1345555555555
Q ss_pred ccchhcccCCCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcchhhhcccCCCccEEEccCCCCChhHHHHHH
Q 007693 243 IDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVA 322 (593)
Q Consensus 243 l~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~ 322 (593)
+..+|..+. .+|+.|++++|.+..+|..+ .++|++|++++|.++... ..+
T Consensus 253 L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l--------------------------~~sL~~L~Ls~N~Lt~LP-~~l- 302 (754)
T PRK15370 253 ITELPERLP--SALQSLDLFHNKISCLPENL--------------------------PEELRYLSVYDNSIRTLP-AHL- 302 (754)
T ss_pred cCcCChhHh--CCCCEEECcCCccCcccccc--------------------------CCCCcEEECCCCccccCc-ccc-
Confidence 554444332 24445555554444443321 134555555555444321 111
Q ss_pred hccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhh
Q 007693 323 CVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVL 402 (593)
Q Consensus 323 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 402 (593)
.++|+.|++++|.++..+.. -.++|+.|++++|.++..+ ..+ .++|+.|++++|++...+..
T Consensus 303 --p~sL~~L~Ls~N~Lt~LP~~----l~~sL~~L~Ls~N~Lt~LP-~~l--~~sL~~L~Ls~N~L~~LP~~--------- 364 (754)
T PRK15370 303 --PSGITHLNVQSNSLTALPET----LPPGLKTLEAGENALTSLP-ASL--PPELQVLDVSKNQITVLPET--------- 364 (754)
T ss_pred --hhhHHHHHhcCCccccCCcc----ccccceeccccCCccccCC-hhh--cCcccEEECCCCCCCcCChh---------
Confidence 13455555555555443221 1234555555555554422 212 24555555555555432211
Q ss_pred hHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCch---hHHhhhcCCCCcEEEecCcccC
Q 007693 403 SLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDV---SLHQLSSLSKLTNLSIRDAVLT 472 (593)
Q Consensus 403 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~l~~L~~L~L~~n~l~ 472 (593)
+ .++|+.|++++|.++. +|..+. ..|+.|++++|+++.+ .+..+..++++..|++.+|+++
T Consensus 365 ----l--p~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 365 ----L--PPTITTLDVSRNALTN-LPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred ----h--cCCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 1 1345555555555554 232221 2355555555555532 1222233455556666666554
No 21
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.55 E-value=7.6e-15 Score=139.33 Aligned_cols=179 Identities=25% Similarity=0.323 Sum_probs=102.9
Q ss_pred CCChhHHHHHHhccCCCcEEEcCCC-CCCCchHHHHHcCCCCCcEEEccCCC-CChHHHHHhh-cCCCCCEEEeeCCccC
Q 007693 312 MIGDDSVEMVACVGANLRNLNLSNT-RFSSAGVGILAGHLPNLEILSLSGTQ-IDDYAISYMS-MMPSLKFIDISNTDIK 388 (593)
Q Consensus 312 ~l~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~-~~~~L~~L~Ls~n~i~ 388 (593)
.+++.....+...+..|+.|..+++ .+++.....+..++++|+.|.++.|+ +++.....++ +++.|+.+++.++...
T Consensus 280 ~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~ 359 (483)
T KOG4341|consen 280 QLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLI 359 (483)
T ss_pred cccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccccee
Confidence 3555554445555556666666654 34555555555566666666666663 4444433343 4555555555544321
Q ss_pred ccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCC-CCchhHHhh----hcCCCCcE
Q 007693 389 GFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNAS-LTDVSLHQL----SSLSKLTN 463 (593)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l----~~l~~L~~ 463 (593)
... . ....-.+++.|+.|.+++|. +++.+...+ .....|+.
T Consensus 360 ~d~--------------t--------------------L~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~ 405 (483)
T KOG4341|consen 360 TDG--------------T--------------------LASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEV 405 (483)
T ss_pred hhh--------------h--------------------HhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccce
Confidence 100 0 00111234444444444443 222211122 23456777
Q ss_pred EEecCccc-CcccccCccCCCCCceEecCCCccCCHHHHHHHHhhCCcEEEEeeeccccCCC
Q 007693 464 LSIRDAVL-TNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSD 524 (593)
Q Consensus 464 L~L~~n~l-~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 524 (593)
+.|++++. ++...+.+..+++|+.+++-+|.-++...+..+..++|++.++..+....|+.
T Consensus 406 lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a~~t~p~ 467 (483)
T KOG4341|consen 406 LELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYFAPVTPPG 467 (483)
T ss_pred eeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhccCCCCcc
Confidence 77777653 33445566778899999999999999999999999999999986666655553
No 22
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.46 E-value=5.9e-14 Score=130.53 Aligned_cols=193 Identities=22% Similarity=0.274 Sum_probs=124.4
Q ss_pred hhcccCCCccEEEccCCCCChhHHHHHHh---ccCCCcEEEcCCCCCCCchHHHH------------HcCCCCCcEEEcc
Q 007693 295 CFLTQMKALEHLDLSSSMIGDDSVEMVAC---VGANLRNLNLSNTRFSSAGVGIL------------AGHLPNLEILSLS 359 (593)
Q Consensus 295 ~~l~~~~~L~~L~L~~n~l~~~~~~~~~~---~~~~L~~L~l~~n~l~~~~~~~~------------~~~~~~L~~L~l~ 359 (593)
+++..+++|++++||+|.+...++..+.. .+..|++|.|.+|.+...+...+ .+.-+.|+++...
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence 34445556666666666655444433322 23566666666666554433321 1345678888888
Q ss_pred CCCCChHHH----HHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCc----cccc
Q 007693 360 GTQIDDYAI----SYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT----LFPL 431 (593)
Q Consensus 360 ~n~i~~~~~----~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~ 431 (593)
+|++.+... ..|...+.|+.+.+..|.|...- ......++..+++|+.|||..|-++... ...+
T Consensus 166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG--------~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL 237 (382)
T KOG1909|consen 166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEG--------VTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKAL 237 (382)
T ss_pred ccccccccHHHHHHHHHhccccceEEEecccccCch--------hHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHh
Confidence 887764433 34446688888888888775211 1122346788888888888888777532 3346
Q ss_pred cCCCCCcEEecCCCCCCchhHHhh-----hcCCCCcEEEecCcccCcccccC----ccCCCCCceEecCCCcc
Q 007693 432 STFKELIHLSLRNASLTDVSLHQL-----SSLSKLTNLSIRDAVLTNSGLGS----FKPPRSLKLLDLHGGWL 495 (593)
Q Consensus 432 ~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~~~~~~----~~~~~~L~~L~l~~n~~ 495 (593)
..+++|+.|++++|.+...+...| ...|+|+.|.+.+|.|+...... +...+.|..|+|++|.+
T Consensus 238 ~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 238 SSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 677888888998888877555444 34788999999999888754332 23358899999999988
No 23
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=2.4e-14 Score=136.75 Aligned_cols=212 Identities=24% Similarity=0.261 Sum_probs=141.5
Q ss_pred CCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcchh----hhcccCCCccEEEccCCCCChhHHHHHHhccCC
Q 007693 252 NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF----CFLTQMKALEHLDLSSSMIGDDSVEMVACVGAN 327 (593)
Q Consensus 252 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~----~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~ 327 (593)
.+.+|+++.+.++.....+..-....|++++.||+|.|-+..+ .....+|+|+.|+++.|.+............++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 4445555555555544433222234667777777777766655 445677888888888887653322222223378
Q ss_pred CcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhh
Q 007693 328 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTAL 407 (593)
Q Consensus 328 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~ 407 (593)
|+.|.++.|.++......+...+|+|+.|++..|..-.........+..|+.|||++|++...... ...
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~-----------~~~ 267 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQG-----------YKV 267 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccc-----------ccc
Confidence 899999999888777777777889999999988852222222234567889999999887655422 246
Q ss_pred ccCCccCEEecCCCCcCCCcc-cc-----ccCCCCCcEEecCCCCCCchh-HHhhhcCCCCcEEEecCcccCcc
Q 007693 408 QNLNHLERLNLEQTQVSDATL-FP-----LSTFKELIHLSLRNASLTDVS-LHQLSSLSKLTNLSIRDAVLTNS 474 (593)
Q Consensus 408 ~~l~~L~~L~L~~n~l~~~~~-~~-----~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~ 474 (593)
+.++.|..|+++.|.+.++-. .. ...+++|++|+++.|++.+.. ...+..+++|+.|.+..|.++..
T Consensus 268 ~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 268 GTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred ccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 788888999999988876322 22 245788999999999886532 23456678888888888887764
No 24
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.1e-13 Score=125.67 Aligned_cols=223 Identities=21% Similarity=0.277 Sum_probs=153.6
Q ss_pred HHHHHhchhhHH----hHhhhhcccccCchHHHHHHHHHHHHhccc-------------ChhhHhhhcCCccEEEecCCC
Q 007693 14 IEAACQSGESVQ----KWRRQRRSLERLPAHLADSLLRHLIRRRLI-------------FPSLLEVFKHNAEAIELRGEN 76 (593)
Q Consensus 14 ~~~~~~~~~~~~----~~~~~~~~l~~lp~~l~~~~l~~l~~~~~~-------------~p~~~~~~~~~L~~L~L~~~~ 76 (593)
+..||++|+.+. -|..-+.....+.++... ++...+.. +.+.+..|...++.|||+...
T Consensus 121 ~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~----~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~ 196 (419)
T KOG2120|consen 121 VSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLG----RLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSV 196 (419)
T ss_pred HHHHHHHHhhccccccceeeeccCCCccChhHHH----HHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhh
Confidence 466999987763 243333444444443333 33333321 334455566779999999876
Q ss_pred CCChhHHHHHhcCCCccEEEcCCCCccCchHHHhhhCCCCCcEEecCCCCCCChhhHHhh-cCCCCCcEEEccCCCCChh
Q 007693 77 SVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHL-LSISTLEKLWLSETGLTAD 155 (593)
Q Consensus 77 ~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l-~~~~~L~~L~L~~~~~~~~ 155 (593)
.....+...++.|.+|+.|.|.+++ +.+.....++...+|+.|+|+.|.+++..+...+ .+|+.|..|++++|.+...
T Consensus 197 it~stl~~iLs~C~kLk~lSlEg~~-LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~ 275 (419)
T KOG2120|consen 197 ITVSTLHGILSQCSKLKNLSLEGLR-LDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTE 275 (419)
T ss_pred eeHHHHHHHHHHHHhhhhccccccc-cCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccch
Confidence 3334566778899999999999987 8887777899999999999999999988777664 5899999999999977654
Q ss_pred HHH-HhcC-CCCCCEEEcCCCC--CChhhHHHh-hcCCCCCEEEccCC-ccCccchHhhcCCCCCCeeeccccCC-----
Q 007693 156 GIA-LLSS-LQNLSVLDLGGLP--VTDLVLRSL-QVLTKLEYLDLWGS-QVSNRGAAVLKMFPRLSFLNLAWTGV----- 224 (593)
Q Consensus 156 ~~~-~l~~-l~~L~~L~L~~n~--l~~~~~~~l-~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~l~~n~l----- 224 (593)
... ++++ -++|+.|+++|+. +.......+ ..+++|.+|||++| .++......|.+++.|++|.++.|-.
T Consensus 276 ~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~ 355 (419)
T KOG2120|consen 276 KVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPET 355 (419)
T ss_pred hhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHH
Confidence 433 2332 4689999999864 222222333 68899999999986 56665666778888888888877632
Q ss_pred -cCCCCCCCCcEEEcCCC
Q 007693 225 -TKLPNISSLECLNLSNC 241 (593)
Q Consensus 225 -~~l~~l~~L~~L~l~~n 241 (593)
-.+...|.|.+|++-++
T Consensus 356 ~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 356 LLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeeeccCcceEEEEeccc
Confidence 12445566666666544
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.41 E-value=8.1e-13 Score=123.05 Aligned_cols=262 Identities=22% Similarity=0.214 Sum_probs=118.2
Q ss_pred HHHHhcCCCccEEEcCCCCccCchHHHhh----hCCCCCcEEecCCC--CCCChhhHHhhcCCCCCcEEEccCCCCChhH
Q 007693 83 MAYLGAFRYLRSLNVADCRRVTSSALWAL----TGMTCLKELDLSRC--VKVTDAGMKHLLSISTLEKLWLSETGLTADG 156 (593)
Q Consensus 83 ~~~~~~~~~L~~L~L~~~~~i~~~~~~~l----~~l~~L~~L~L~~~--~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~ 156 (593)
.+.+.....++.|+|++|. +......++ ...++|+..+++.- ....+..+..+. ..
T Consensus 23 ~~~~~~~~s~~~l~lsgnt-~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~-----------------~l 84 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSGNT-FGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALK-----------------ML 84 (382)
T ss_pred HHHhcccCceEEEeccCCc-hhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHH-----------------HH
Confidence 3444455666777777666 544444333 33455555555542 011111111110 01
Q ss_pred HHHhcCCCCCCEEEcCCCCCChhhHHHh----hcCCCCCEEEccCCccCccchHhhcCCCCCCeeeccccCCcCCCCCCC
Q 007693 157 IALLSSLQNLSVLDLGGLPVTDLVLRSL----QVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISS 232 (593)
Q Consensus 157 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l----~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l~~ 232 (593)
..++..+++|++|+||.|-+.-..+..| ..+..|++|.|.+|.+.......++. .|..|. .....+.-+.
T Consensus 85 ~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~----~~kk~~~~~~ 158 (382)
T KOG1909|consen 85 SKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA----VNKKAASKPK 158 (382)
T ss_pred HHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH----HHhccCCCcc
Confidence 1233445556666666665544333332 45666777777776665433333221 011110 0011233455
Q ss_pred CcEEEcCCCcccc-----hhcccCCCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcchhhhcccCCCccEEE
Q 007693 233 LECLNLSNCTIDS-----ILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLD 307 (593)
Q Consensus 233 L~~L~l~~n~l~~-----l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~ 307 (593)
|+.+...+|.+.. +...+...+.|+.+.+..|.+........ ...+..+++|+.||
T Consensus 159 Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al-------------------~eal~~~~~LevLd 219 (382)
T KOG1909|consen 159 LRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTAL-------------------AEALEHCPHLEVLD 219 (382)
T ss_pred eEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHH-------------------HHHHHhCCcceeee
Confidence 6666666555441 22333344555555555555442111000 03344455555555
Q ss_pred ccCCCCChhHHHHHHhcc---CCCcEEEcCCCCCCCchHHHH----HcCCCCCcEEEccCCCCChHHHH----HhhcCCC
Q 007693 308 LSSSMIGDDSVEMVACVG---ANLRNLNLSNTRFSSAGVGIL----AGHLPNLEILSLSGTQIDDYAIS----YMSMMPS 376 (593)
Q Consensus 308 L~~n~l~~~~~~~~~~~~---~~L~~L~l~~n~l~~~~~~~~----~~~~~~L~~L~l~~n~i~~~~~~----~l~~~~~ 376 (593)
|.+|-++..+...++... ++|++|++++|.+...+...+ -...|+|+.|.+.+|.|+..... .+...+.
T Consensus 220 l~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~d 299 (382)
T KOG1909|consen 220 LRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPD 299 (382)
T ss_pred cccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchh
Confidence 555555443333332211 445555555555554443322 23345666666666665533222 2224566
Q ss_pred CCEEEeeCCcc
Q 007693 377 LKFIDISNTDI 387 (593)
Q Consensus 377 L~~L~Ls~n~i 387 (593)
|+.|+|++|.+
T Consensus 300 L~kLnLngN~l 310 (382)
T KOG1909|consen 300 LEKLNLNGNRL 310 (382)
T ss_pred hHHhcCCcccc
Confidence 66666666665
No 26
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.39 E-value=3.8e-15 Score=124.13 Aligned_cols=184 Identities=20% Similarity=0.247 Sum_probs=142.2
Q ss_pred hhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcC
Q 007693 295 CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMM 374 (593)
Q Consensus 295 ~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~ 374 (593)
+.+..+..++.|.+++|+++. .+..++.+ .+|+.|++++|++.+.+... +.++.|+.|++.-|++.- .|..|+.+
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~~-vppnia~l-~nlevln~~nnqie~lp~~i--ssl~klr~lnvgmnrl~~-lprgfgs~ 101 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLTV-VPPNIAEL-KNLEVLNLSNNQIEELPTSI--SSLPKLRILNVGMNRLNI-LPRGFGSF 101 (264)
T ss_pred ccccchhhhhhhhcccCceee-cCCcHHHh-hhhhhhhcccchhhhcChhh--hhchhhhheecchhhhhc-CccccCCC
Confidence 445566777788888888874 44455666 78888888888888876654 568889999998887753 56778899
Q ss_pred CCCCEEEeeCCccCcc-ccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHH
Q 007693 375 PSLKFIDISNTDIKGF-IQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLH 453 (593)
Q Consensus 375 ~~L~~L~Ls~n~i~~~-~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 453 (593)
|.|+.||+.+|++..- .|. .|-.+..|+.|+|+.|.+.- +|..++.+++|+.|.+..|.+-. .|.
T Consensus 102 p~levldltynnl~e~~lpg------------nff~m~tlralyl~dndfe~-lp~dvg~lt~lqil~lrdndll~-lpk 167 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPG------------NFFYMTTLRALYLGDNDFEI-LPPDVGKLTNLQILSLRDNDLLS-LPK 167 (264)
T ss_pred chhhhhhccccccccccCCc------------chhHHHHHHHHHhcCCCccc-CChhhhhhcceeEEeeccCchhh-CcH
Confidence 9999999999987643 344 57777889999999999876 67788999999999999999876 577
Q ss_pred hhhcCCCCcEEEecCcccCcccccCccCC---CCCceEecCCCccCCH
Q 007693 454 QLSSLSKLTNLSIRDAVLTNSGLGSFKPP---RSLKLLDLHGGWLLTE 498 (593)
Q Consensus 454 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~---~~L~~L~l~~n~~~~~ 498 (593)
.++.++.|++|.+.+|+++-.+| .++.+ .+=+.+.+.+|+++..
T Consensus 168 eig~lt~lrelhiqgnrl~vlpp-el~~l~l~~~k~v~r~E~NPwv~p 214 (264)
T KOG0617|consen 168 EIGDLTRLRELHIQGNRLTVLPP-ELANLDLVGNKQVMRMEENPWVNP 214 (264)
T ss_pred HHHHHHHHHHHhcccceeeecCh-hhhhhhhhhhHHHHhhhhCCCCCh
Confidence 88999999999999999987644 34443 3335667778888553
No 27
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.37 E-value=4.9e-15 Score=123.51 Aligned_cols=159 Identities=21% Similarity=0.261 Sum_probs=105.2
Q ss_pred CCCCCcEEEcCCCcccchhcccCCCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcchh-hhcccCCCccEEE
Q 007693 229 NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKALEHLD 307 (593)
Q Consensus 229 ~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~l~~~~~L~~L~ 307 (593)
.+..++.|.+++|+++.+|+.+..+.+|+.|++.+|++...|..++ .+++|+.|++..|.+... ..++.+|.|+.||
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~is--sl~klr~lnvgmnrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSIS--SLPKLRILNVGMNRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhh--hchhhhheecchhhhhcCccccCCCchhhhhh
Confidence 4566777888888888888888888888888888888888877654 677788888777777666 5677778888888
Q ss_pred ccCCCCChhH-HHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCc
Q 007693 308 LSSSMIGDDS-VEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTD 386 (593)
Q Consensus 308 L~~n~l~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~ 386 (593)
+.+|++.+.. +..+..+ ..|+.|.++.|.+.-.+++. +.+.+|+.|.+.+|.+.. .|..++.+..|++|++.+|+
T Consensus 109 ltynnl~e~~lpgnff~m-~tlralyl~dndfe~lp~dv--g~lt~lqil~lrdndll~-lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYM-TTLRALYLGDNDFEILPPDV--GKLTNLQILSLRDNDLLS-LPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred ccccccccccCCcchhHH-HHHHHHHhcCCCcccCChhh--hhhcceeEEeeccCchhh-CcHHHHHHHHHHHHhcccce
Confidence 8777765422 2223322 55666666666665554443 456666666666665543 33445555566666666665
Q ss_pred cCccccc
Q 007693 387 IKGFIQQ 393 (593)
Q Consensus 387 i~~~~~~ 393 (593)
++-.+|.
T Consensus 185 l~vlppe 191 (264)
T KOG0617|consen 185 LTVLPPE 191 (264)
T ss_pred eeecChh
Confidence 5544443
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=6.4e-13 Score=127.11 Aligned_cols=213 Identities=20% Similarity=0.240 Sum_probs=159.1
Q ss_pred hcCCCccEEeccCCCcchh---hhcccCCCccEEEccCCCCChhHH-HHHHhccCCCcEEEcCCCCCCCchHHHHHcCCC
Q 007693 276 IETSLLSFLDVSNSSLSRF---CFLTQMKALEHLDLSSSMIGDDSV-EMVACVGANLRNLNLSNTRFSSAGVGILAGHLP 351 (593)
Q Consensus 276 ~~~~~L~~L~ls~n~l~~~---~~l~~~~~L~~L~L~~n~l~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 351 (593)
.++.+|+.+.+.++.+... .....|++++.|+|+.|-+....+ ..+...+|+|+.|+++.|++...........++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 3678999999999887665 367789999999999998876433 334444599999999999876544433334688
Q ss_pred CCcEEEccCCCCChHHHHH-hhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCc-cc
Q 007693 352 NLEILSLSGTQIDDYAISY-MSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT-LF 429 (593)
Q Consensus 352 ~L~~L~l~~n~i~~~~~~~-l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~ 429 (593)
+|+.|.++.|.++.-.... ...+|+|+.|+|.+|........ ....+..|+.|||++|.+-+.. ..
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~------------~~~i~~~L~~LdLs~N~li~~~~~~ 265 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKAT------------STKILQTLQELDLSNNNLIDFDQGY 265 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecc------------hhhhhhHHhhccccCCccccccccc
Confidence 9999999999998544333 34799999999999963333222 3566788999999999887632 23
Q ss_pred cccCCCCCcEEecCCCCCCchhH-Hh-----hhcCCCCcEEEecCcccCcc-cccCccCCCCCceEecCCCccCCHHH
Q 007693 430 PLSTFKELIHLSLRNASLTDVSL-HQ-----LSSLSKLTNLSIRDAVLTNS-GLGSFKPPRSLKLLDLHGGWLLTEDA 500 (593)
Q Consensus 430 ~~~~l~~L~~L~L~~n~l~~~~~-~~-----l~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~ 500 (593)
..+.++.|..|+++.|.+.++.. +. ...+++|+.|++..|+|.+. ....+..+++|+.|.+..|++.....
T Consensus 266 ~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~~ 343 (505)
T KOG3207|consen 266 KVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKETD 343 (505)
T ss_pred ccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccccc
Confidence 46789999999999999887422 22 35689999999999999653 23344556888999999998855443
No 29
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.21 E-value=1.5e-11 Score=117.17 Aligned_cols=344 Identities=21% Similarity=0.236 Sum_probs=206.7
Q ss_pred HHHHHHHHHHhchhhHHhHh---hhhcccccCchHHHHHHHHHHHHhcccChhhHhhhcCCccEEEecCCCCCCh-hHHH
Q 007693 9 LVRLCIEAACQSGESVQKWR---RQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDA-EWMA 84 (593)
Q Consensus 9 L~~~c~~~~~~~~~~~~~~~---~~~~~l~~lp~~l~~~~l~~l~~~~~~~p~~~~~~~~~L~~L~L~~~~~~~~-~~~~ 84 (593)
-+.+|-.+.|..+.+.-+.| .++..+...+.++...+...+.... ...++.|.++|+..... ....
T Consensus 89 tksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rc----------gg~lk~LSlrG~r~v~~sslrt 158 (483)
T KOG4341|consen 89 TKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDGGVVENMISRC----------GGFLKELSLRGCRAVGDSSLRT 158 (483)
T ss_pred HHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCCcceehHhhhh----------ccccccccccccccCCcchhhH
Confidence 34455544444433433333 3455666666666554444433222 13489999999974433 3445
Q ss_pred HHhcCCCccEEEcCCCCccCchHHHhhh-CCCCCcEEecCCCCCCChhhHHhhc-CCCCCcEEEccCC-CCChhHHHH-h
Q 007693 85 YLGAFRYLRSLNVADCRRVTSSALWALT-GMTCLKELDLSRCVKVTDAGMKHLL-SISTLEKLWLSET-GLTADGIAL-L 160 (593)
Q Consensus 85 ~~~~~~~L~~L~L~~~~~i~~~~~~~l~-~l~~L~~L~L~~~~~l~~~~~~~l~-~~~~L~~L~L~~~-~~~~~~~~~-l 160 (593)
...+||+++.|++.+|..+++.....++ .|++|++|++..|..+++.....++ .+++|+++++++| .+++.+... +
T Consensus 159 ~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~ 238 (483)
T KOG4341|consen 159 FASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQ 238 (483)
T ss_pred HhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHh
Confidence 5568999999999999999998888887 8999999999999888988888776 7999999999998 566644443 3
Q ss_pred cCCCCCCEEEcCCCCCChhhHHHh----hcCCCCCEEEccCC-ccCccchHhh-cCCCCCCeeeccccCCcCCCCCCCCc
Q 007693 161 SSLQNLSVLDLGGLPVTDLVLRSL----QVLTKLEYLDLWGS-QVSNRGAAVL-KMFPRLSFLNLAWTGVTKLPNISSLE 234 (593)
Q Consensus 161 ~~l~~L~~L~L~~n~l~~~~~~~l----~~l~~L~~L~L~~n-~l~~~~~~~l-~~l~~L~~L~l~~n~l~~l~~l~~L~ 234 (593)
.++..++.+.+.+|.-.+ .+.+ +.+..+..+++..| .+++.....+ ..+..|+.++.+++.-
T Consensus 239 rG~~~l~~~~~kGC~e~~--le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~---------- 306 (483)
T KOG4341|consen 239 RGCKELEKLSLKGCLELE--LEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTD---------- 306 (483)
T ss_pred ccchhhhhhhhccccccc--HHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCC----------
Confidence 467778888777764222 1222 34455666666565 4554432222 2233444444443311
Q ss_pred EEEcCCCccc-chhcccC-CCCCcceEeccCccc-cchhhHHhhhcCCCccEEeccCCCcchh----hhcccCCCccEEE
Q 007693 235 CLNLSNCTID-SILEGNE-NKAPLAKISLAGTTF-INEREAFLYIETSLLSFLDVSNSSLSRF----CFLTQMKALEHLD 307 (593)
Q Consensus 235 ~L~l~~n~l~-~l~~~~~-~~~~L~~L~l~~n~~-~~~~~~~~~~~~~~L~~L~ls~n~l~~~----~~l~~~~~L~~L~ 307 (593)
++ .+-..++ ++.+|+.+.+.+++. +..-......+++.|+.+++..+..... ..-.+++.|+.+.
T Consensus 307 --------~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls 378 (483)
T KOG4341|consen 307 --------ITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS 378 (483)
T ss_pred --------CchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence 11 1111222 455555555555542 1111111123556666666666654322 2234678888888
Q ss_pred ccCCC-CChhHHHHHHh---ccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCC-CChHHHHHhh-cCCCCCEEE
Q 007693 308 LSSSM-IGDDSVEMVAC---VGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQ-IDDYAISYMS-MMPSLKFID 381 (593)
Q Consensus 308 L~~n~-l~~~~~~~~~~---~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~-~~~~L~~L~ 381 (593)
++.|. +++.+...+.. ....|..+.++++.............|++|+.+++.+++ ++......+. .+|++++..
T Consensus 379 lshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 379 LSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHA 458 (483)
T ss_pred hhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehh
Confidence 88764 55554444432 125788888888876555444444678899998888874 5555545454 678877765
Q ss_pred e
Q 007693 382 I 382 (593)
Q Consensus 382 L 382 (593)
+
T Consensus 459 ~ 459 (483)
T KOG4341|consen 459 Y 459 (483)
T ss_pred h
Confidence 4
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.20 E-value=1.4e-11 Score=108.01 Aligned_cols=126 Identities=29% Similarity=0.344 Sum_probs=41.0
Q ss_pred CCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcchhhhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEc
Q 007693 254 APLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNL 333 (593)
Q Consensus 254 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l 333 (593)
.++++|++.+|.+..+... . ..+.+|+.|++++|.++.++.+..++.|++|++++|.+++... .+...+++|++|++
T Consensus 19 ~~~~~L~L~~n~I~~Ie~L-~-~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~-~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIENL-G-ATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISE-GLDKNLPNLQELYL 95 (175)
T ss_dssp -----------------S----TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CH-HHHHH-TT--EEE-
T ss_pred cccccccccccccccccch-h-hhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCcccc-chHHhCCcCCEEEC
Confidence 3455555555555544221 1 1356677777777777777777777777777777777775433 22222377777777
Q ss_pred CCCCCCCchHHHHHcCCCCCcEEEccCCCCCh---HHHHHhhcCCCCCEEEe
Q 007693 334 SNTRFSSAGVGILAGHLPNLEILSLSGTQIDD---YAISYMSMMPSLKFIDI 382 (593)
Q Consensus 334 ~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~---~~~~~l~~~~~L~~L~L 382 (593)
++|++.+...-...+.+|+|++|++.+|+++. .-...+..+|+|+.||-
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 77776654332223456777777777766553 22334445666666654
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.18 E-value=2.5e-11 Score=106.43 Aligned_cols=127 Identities=20% Similarity=0.290 Sum_probs=50.1
Q ss_pred hcCCCCCEEEeeCCccCccccccccchhhhhhHHhhc-cCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCch
Q 007693 372 SMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQ-NLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDV 450 (593)
Q Consensus 372 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 450 (593)
.++.++++|+|.+|.|.... .++ .+.+|+.|++++|.|+.. +.+..++.|+.|++++|+|+.+
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie--------------~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i 79 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE--------------NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI 79 (175)
T ss_dssp ----------------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-
T ss_pred cccccccccccccccccccc--------------chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc
Confidence 35567888888888887542 244 567889999999998874 4677889999999999999886
Q ss_pred hHHhhhcCCCCcEEEecCcccCccc-ccCccCCCCCceEecCCCccCCHHHHHHH-HhhCCcEEEE
Q 007693 451 SLHQLSSLSKLTNLSIRDAVLTNSG-LGSFKPPRSLKLLDLHGGWLLTEDAILQF-CKMHPRIEVW 514 (593)
Q Consensus 451 ~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-~~~~~~l~~~ 514 (593)
.+.....+|+|+.|++++|+|.+.. ...+..+++|+.|++.+||+........+ ...+|++...
T Consensus 80 ~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~L 145 (175)
T PF14580_consen 80 SEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVL 145 (175)
T ss_dssp CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEE
T ss_pred ccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhhee
Confidence 5433356899999999999998743 34566689999999999998444444443 5566766554
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.14 E-value=4.6e-12 Score=115.35 Aligned_cols=200 Identities=18% Similarity=0.177 Sum_probs=134.2
Q ss_pred cCCCccEEeccCCCcchh-hhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCC---CCCCchHHHHHcCCCC
Q 007693 277 ETSLLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNT---RFSSAGVGILAGHLPN 352 (593)
Q Consensus 277 ~~~~L~~L~ls~n~l~~~-~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n---~l~~~~~~~~~~~~~~ 352 (593)
-+.+|..+.++.+.-..+ .....-|.|+++.+.+..+.+... .+ |.-...+.... ..++.....+ ..+..
T Consensus 212 ~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~-l~----pe~~~~D~~~~E~~t~~G~~~~~~-dTWq~ 285 (490)
T KOG1259|consen 212 AFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPS-LL----PETILADPSGSEPSTSNGSALVSA-DTWQE 285 (490)
T ss_pred HhhhhheeeeeccchhheeceeecCchhheeeeeccccccccc-cc----chhhhcCccCCCCCccCCceEEec-chHhh
Confidence 346677777777665544 222334778888777655443211 11 11111222221 1122111111 23567
Q ss_pred CcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCcccccc
Q 007693 353 LEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLS 432 (593)
Q Consensus 353 L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 432 (593)
|+++|+++|.|+.+. ....-.|.++.|++|+|.+.... .+..+++|+.|||++|.++.. ..+-.
T Consensus 286 LtelDLS~N~I~~iD-ESvKL~Pkir~L~lS~N~i~~v~--------------nLa~L~~L~~LDLS~N~Ls~~-~Gwh~ 349 (490)
T KOG1259|consen 286 LTELDLSGNLITQID-ESVKLAPKLRRLILSQNRIRTVQ--------------NLAELPQLQLLDLSGNLLAEC-VGWHL 349 (490)
T ss_pred hhhccccccchhhhh-hhhhhccceeEEeccccceeeeh--------------hhhhcccceEeecccchhHhh-hhhHh
Confidence 999999999887543 34556799999999999987542 477889999999999988863 23334
Q ss_pred CCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcc-cccCccCCCCCceEecCCCccCCHHH
Q 007693 433 TFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS-GLGSFKPPRSLKLLDLHGGWLLTEDA 500 (593)
Q Consensus 433 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~ 500 (593)
.+-+.++|.|++|.|.+. ..+.++.+|..||+++|+|... ....+.++|-|+.+.|.+||+....+
T Consensus 350 KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 350 KLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 677889999999998764 3688889999999999999875 34577888999999999999855443
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.11 E-value=9.4e-12 Score=113.39 Aligned_cols=226 Identities=18% Similarity=0.191 Sum_probs=145.6
Q ss_pred HHHHHhcCCCccEEEcCCCCc-------cCchHHHhhhCCCCCcEEecCCCCCCChhhHHhhc-CCCCCcEEEccCCCCC
Q 007693 82 WMAYLGAFRYLRSLNVADCRR-------VTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLL-SISTLEKLWLSETGLT 153 (593)
Q Consensus 82 ~~~~~~~~~~L~~L~L~~~~~-------i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~-~~~~L~~L~L~~~~~~ 153 (593)
+.-.+.-+.+|.+|.++.... +....+..+.-+++|+.+.++.|. ...+..+. .-+.|.++...+..++
T Consensus 174 ~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~---~~~i~~~~~~kptl~t~~v~~s~~~ 250 (490)
T KOG1259|consen 174 FSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS---TENIVDIELLKPTLQTICVHNTTIQ 250 (490)
T ss_pred hHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc---hhheeceeecCchhheeeeeccccc
Confidence 334444567788887775331 111111223445788888888874 22222222 3467888887776554
Q ss_pred hhHHHHhcCCCCCCEEEcCC-CCCChhhHHHhhcCCCCCEEEccCCccCccchHhhcCCCCCCeeeccccCCcCCC---C
Q 007693 154 ADGIALLSSLQNLSVLDLGG-LPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP---N 229 (593)
Q Consensus 154 ~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~---~ 229 (593)
.... +-..+.+....... ....|...........|+++|+++|.|+ .+..++.-.|.++.|++++|.+..+. .
T Consensus 251 ~~~~--l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~nLa~ 327 (490)
T KOG1259|consen 251 DVPS--LLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQNLAE 327 (490)
T ss_pred cccc--ccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehhhhh
Confidence 3221 11111121111111 1122222222333456788888888877 34566777788888888888877644 5
Q ss_pred CCCCcEEEcCCCcccchhcccCCCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcchh---hhcccCCCccEE
Q 007693 230 ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF---CFLTQMKALEHL 306 (593)
Q Consensus 230 l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~---~~l~~~~~L~~L 306 (593)
+++|+.||+++|.++.+..+-..+-++++|.+++|.+..... ...+.+|.+||+++|++..+ ..++++|.|+++
T Consensus 328 L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSG---L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l 404 (490)
T KOG1259|consen 328 LPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLSG---LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETL 404 (490)
T ss_pred cccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhhh---hHhhhhheeccccccchhhHHHhcccccccHHHHH
Confidence 678889999999888887776688889999999998776543 34778899999999998776 678899999999
Q ss_pred EccCCCCChh
Q 007693 307 DLSSSMIGDD 316 (593)
Q Consensus 307 ~L~~n~l~~~ 316 (593)
.+.+|.+...
T Consensus 405 ~L~~NPl~~~ 414 (490)
T KOG1259|consen 405 RLTGNPLAGS 414 (490)
T ss_pred hhcCCCcccc
Confidence 9999988753
No 34
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=9.2e-11 Score=106.98 Aligned_cols=178 Identities=24% Similarity=0.257 Sum_probs=91.6
Q ss_pred CccEEeccCCCcchh---hhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCC-CCCCchHHHHHcCCCCCcE
Q 007693 280 LLSFLDVSNSSLSRF---CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNT-RFSSAGVGILAGHLPNLEI 355 (593)
Q Consensus 280 ~L~~L~ls~n~l~~~---~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~L~~ 355 (593)
.|+++|+|+..++.- ..++.|.+|+.|.+.++.+.|.....++.. .+|+.|+++.+ .++..+...++.+|..|.+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN-~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKN-SNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcc-ccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 355555555554432 344555666666666666666555555555 56666666653 4555555555566666666
Q ss_pred EEccCCCCChHHHHH-hh-cCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCC-CcCCCcccccc
Q 007693 356 LSLSGTQIDDYAISY-MS-MMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQT-QVSDATLFPLS 432 (593)
Q Consensus 356 L~l~~n~i~~~~~~~-l~-~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~ 432 (593)
|+++.|.+....... +. --++|+.|+|+|+.-.-.... -..-...+++|.+|||+.| .++......|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh---------~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~ 335 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSH---------LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 335 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhH---------HHHHHHhCCceeeeccccccccCchHHHHHH
Confidence 666666544322211 11 235566666666532110000 0012345666666666664 34443444455
Q ss_pred CCCCCcEEecCCCCCCchhHHh---hhcCCCCcEEEecCc
Q 007693 433 TFKELIHLSLRNASLTDVSLHQ---LSSLSKLTNLSIRDA 469 (593)
Q Consensus 433 ~l~~L~~L~L~~n~l~~~~~~~---l~~l~~L~~L~L~~n 469 (593)
.++.|++|.++.|.. ++|.. +...|+|.+||+.++
T Consensus 336 kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 336 KFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 666666666666642 23333 344566666666664
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.06 E-value=3.7e-12 Score=125.78 Aligned_cols=212 Identities=22% Similarity=0.259 Sum_probs=167.9
Q ss_pred EEEcCCCcccchhcccC--CCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcchh-hhcccCCCccEEEccCC
Q 007693 235 CLNLSNCTIDSILEGNE--NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSS 311 (593)
Q Consensus 235 ~L~l~~n~l~~l~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~l~~~~~L~~L~L~~n 311 (593)
.|.|++-++..+|..-. .+..-...+++.|.+..+|..+. .+..|+.+.++.|.+..+ ..+.++..|.+++++.|
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~--~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N 131 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEAC--AFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN 131 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhccccccccCchHHH--HHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc
Confidence 45556666666665544 44455678899999999888655 667899999999999888 78889999999999999
Q ss_pred CCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccc
Q 007693 312 MIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFI 391 (593)
Q Consensus 312 ~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~ 391 (593)
++..... .+.. --|+.|-+++|+++..+... +..+.|..|+.+.|++.... ..++++.+|+.|.+..|++...+
T Consensus 132 qlS~lp~-~lC~--lpLkvli~sNNkl~~lp~~i--g~~~tl~~ld~s~nei~slp-sql~~l~slr~l~vrRn~l~~lp 205 (722)
T KOG0532|consen 132 QLSHLPD-GLCD--LPLKVLIVSNNKLTSLPEEI--GLLPTLAHLDVSKNEIQSLP-SQLGYLTSLRDLNVRRNHLEDLP 205 (722)
T ss_pred hhhcCCh-hhhc--CcceeEEEecCccccCCccc--ccchhHHHhhhhhhhhhhch-HHhhhHHHHHHHHHhhhhhhhCC
Confidence 9885443 3333 46999999999998876655 46789999999999988754 45788999999999999998887
Q ss_pred cccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhh---hcCCCCcEEEecC
Q 007693 392 QQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQL---SSLSKLTNLSIRD 468 (593)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~L~~ 468 (593)
++ +..++ |..||++.|++.. +|..|..|..|++|.|.+|.+.. +|..+ +...=.|+|+..-
T Consensus 206 ~E-------------l~~Lp-Li~lDfScNkis~-iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA 269 (722)
T KOG0532|consen 206 EE-------------LCSLP-LIRLDFSCNKISY-LPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQA 269 (722)
T ss_pred HH-------------HhCCc-eeeeecccCceee-cchhhhhhhhheeeeeccCCCCC-ChHHHHhccceeeeeeecchh
Confidence 76 55444 8999999999998 78889999999999999999987 44444 3344457888888
Q ss_pred cc
Q 007693 469 AV 470 (593)
Q Consensus 469 n~ 470 (593)
++
T Consensus 270 ~q 271 (722)
T KOG0532|consen 270 CQ 271 (722)
T ss_pred cc
Confidence 75
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.04 E-value=1.2e-11 Score=122.25 Aligned_cols=208 Identities=20% Similarity=0.218 Sum_probs=162.3
Q ss_pred eeccccCCcCCC------CCCCCcEEEcCCCcccchhcccCCCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCC
Q 007693 217 LNLAWTGVTKLP------NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS 290 (593)
Q Consensus 217 L~l~~n~l~~l~------~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~ 290 (593)
|.|++-++..+| .+..-...+++.|++..+|.....+..|+.+.++.|.+..++.... ++..|.+++++.|+
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~--~L~~lt~l~ls~Nq 132 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAIC--NLEALTFLDLSSNQ 132 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhh--hhhHHHHhhhccch
Confidence 344444455444 3555667899999999999999999999999999999999988655 88999999999999
Q ss_pred cchhhhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHH
Q 007693 291 LSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISY 370 (593)
Q Consensus 291 l~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~ 370 (593)
+..++.-...--|+.|-+++|+++. .+..+. ....|..|+.+.|.+...+... +++.+|+.|++..|++...+++
T Consensus 133 lS~lp~~lC~lpLkvli~sNNkl~~-lp~~ig-~~~tl~~ld~s~nei~slpsql--~~l~slr~l~vrRn~l~~lp~E- 207 (722)
T KOG0532|consen 133 LSHLPDGLCDLPLKVLIVSNNKLTS-LPEEIG-LLPTLAHLDVSKNEIQSLPSQL--GYLTSLRDLNVRRNHLEDLPEE- 207 (722)
T ss_pred hhcCChhhhcCcceeEEEecCcccc-CCcccc-cchhHHHhhhhhhhhhhchHHh--hhHHHHHHHHHhhhhhhhCCHH-
Confidence 9888332233468999999999884 555566 3389999999999998876655 5688999999999998876554
Q ss_pred hhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCcccccc---CCCCCcEEecCCCC
Q 007693 371 MSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLS---TFKELIHLSLRNAS 446 (593)
Q Consensus 371 l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~l~~L~~L~L~~n~ 446 (593)
+. .=.|..||+|.|++...+.+ |..++.|++|-|.+|.++. .|..+. ...--++|+..-|+
T Consensus 208 l~-~LpLi~lDfScNkis~iPv~-------------fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 208 LC-SLPLIRLDFSCNKISYLPVD-------------FRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred Hh-CCceeeeecccCceeecchh-------------hhhhhhheeeeeccCCCCC-ChHHHHhccceeeeeeecchhcc
Confidence 44 45689999999999876655 9999999999999999987 444443 22335677777774
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.03 E-value=4.8e-10 Score=115.03 Aligned_cols=175 Identities=29% Similarity=0.430 Sum_probs=78.0
Q ss_pred CCccEEeccCCCcchhhhcccCC--CccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEE
Q 007693 279 SLLSFLDVSNSSLSRFCFLTQMK--ALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL 356 (593)
Q Consensus 279 ~~L~~L~ls~n~l~~~~~l~~~~--~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L 356 (593)
+.++.+++.+|.++.++...... +|+.|++++|.+.... ..+..+ +.|+.|++++|++++.+... +..+.|+.|
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~-~~~~~l-~~L~~L~l~~N~l~~l~~~~--~~~~~L~~L 191 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLP-SPLRNL-PNLKNLDLSFNDLSDLPKLL--SNLSNLNNL 191 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhh-hhhhcc-ccccccccCCchhhhhhhhh--hhhhhhhhe
Confidence 44444444444444442222221 4555555555444321 122222 44555555555444443322 124445555
Q ss_pred EccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCC
Q 007693 357 SLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKE 436 (593)
Q Consensus 357 ~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 436 (593)
++++|.+....+. ......|+++.+++|.+...+. .+..+.++..+.+.+|++.. .+..++.++.
T Consensus 192 ~ls~N~i~~l~~~-~~~~~~L~~l~~~~N~~~~~~~-------------~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~ 256 (394)
T COG4886 192 DLSGNKISDLPPE-IELLSALEELDLSNNSIIELLS-------------SLSNLKNLSGLELSNNKLED-LPESIGNLSN 256 (394)
T ss_pred eccCCccccCchh-hhhhhhhhhhhhcCCcceecch-------------hhhhcccccccccCCceeee-ccchhccccc
Confidence 5555554443221 1223335555555553222211 24444555555555555544 1344445555
Q ss_pred CcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcc
Q 007693 437 LIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS 474 (593)
Q Consensus 437 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 474 (593)
+++|++++|.++.+.. ++.+.+++.|++++|.++..
T Consensus 257 l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 257 LETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred cceecccccccccccc--ccccCccCEEeccCcccccc
Confidence 5555555555555332 55555555555555555544
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.03 E-value=3.5e-10 Score=116.09 Aligned_cols=192 Identities=29% Similarity=0.393 Sum_probs=153.4
Q ss_pred EEeccCCCc-chhhhcccCCCccEEEccCCCCChhHHHHHHhccC-CCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccC
Q 007693 283 FLDVSNSSL-SRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGA-NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG 360 (593)
Q Consensus 283 ~L~ls~n~l-~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~ 360 (593)
.++...+.+ .....+...+.++.|++.+|.+++..+... ... +|+.|++++|.+....... +.+++|+.|++++
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~--~~~~nL~~L~l~~N~i~~l~~~~--~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIG--LLKSNLKELDLSDNKIESLPSPL--RNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccc--cchhhcccccccccchhhhhhhh--hccccccccccCC
Confidence 567777776 444556666899999999999987554322 213 8999999999999874222 5799999999999
Q ss_pred CCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEE
Q 007693 361 TQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHL 440 (593)
Q Consensus 361 n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 440 (593)
|++.+..+. .+..++|+.|++++|++...++. ......|++|.+++|.+.. .+..+..+.++..+
T Consensus 173 N~l~~l~~~-~~~~~~L~~L~ls~N~i~~l~~~-------------~~~~~~L~~l~~~~N~~~~-~~~~~~~~~~l~~l 237 (394)
T COG4886 173 NDLSDLPKL-LSNLSNLNNLDLSGNKISDLPPE-------------IELLSALEELDLSNNSIIE-LLSSLSNLKNLSGL 237 (394)
T ss_pred chhhhhhhh-hhhhhhhhheeccCCccccCchh-------------hhhhhhhhhhhhcCCccee-cchhhhhccccccc
Confidence 999986553 33789999999999999877654 3455669999999996444 45677888999999
Q ss_pred ecCCCCCCchhHHhhhcCCCCcEEEecCcccCcccccCccCCCCCceEecCCCccC
Q 007693 441 SLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLL 496 (593)
Q Consensus 441 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~ 496 (593)
.+.+|++... +..++.+++++.|++++|.++.+.. +....+++.|++++|.+.
T Consensus 238 ~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 238 ELSNNKLEDL-PESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ccCCceeeec-cchhccccccceecccccccccccc--ccccCccCEEeccCcccc
Confidence 9999998874 5678899999999999999998755 788899999999999874
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.97 E-value=9.2e-10 Score=118.20 Aligned_cols=110 Identities=18% Similarity=0.249 Sum_probs=90.0
Q ss_pred CCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhh
Q 007693 376 SLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQL 455 (593)
Q Consensus 376 ~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 455 (593)
.++.|+|++|.+.+.+|. .+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|++++.+|..+
T Consensus 419 ~v~~L~L~~n~L~g~ip~------------~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l 486 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPN------------DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486 (623)
T ss_pred EEEEEECCCCCccccCCH------------HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHH
Confidence 367788888888887777 68888888888888888888788888888888888888888888888888
Q ss_pred hcCCCCcEEEecCcccCcccccCccCC-CCCceEecCCCccCC
Q 007693 456 SSLSKLTNLSIRDAVLTNSGLGSFKPP-RSLKLLDLHGGWLLT 497 (593)
Q Consensus 456 ~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~L~~L~l~~n~~~~ 497 (593)
+++++|+.|+|++|.+++..|..+... .++..+++.+|+..|
T Consensus 487 ~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 487 GQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred hcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCcccc
Confidence 888888888888888888877776653 466788888888756
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.93 E-value=6e-10 Score=80.20 Aligned_cols=59 Identities=29% Similarity=0.394 Sum_probs=34.2
Q ss_pred CCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcccccCccCCCCCceEecCCCc
Q 007693 436 ELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGW 494 (593)
Q Consensus 436 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 494 (593)
+|++|++++|+++.+.+..|.++++|++|++++|.++.+.+..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555555555555555555555555555555555555555556666665554
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.93 E-value=7e-10 Score=121.66 Aligned_cols=198 Identities=19% Similarity=0.175 Sum_probs=124.1
Q ss_pred CccEEEecCCCCCChhHHHHHhcCCCccEEEcCCCCc-cCchHHHhhhCCCCCcEEecCCCCCCChhhHHhhcCCCCCcE
Q 007693 66 NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRR-VTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEK 144 (593)
Q Consensus 66 ~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~-i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~~~~L~~ 144 (593)
.+++..+.++. +. . ...-..+++|++|-+.+|.. +.......|..++.|++|||++|.. ....|..++++-+||+
T Consensus 524 ~~rr~s~~~~~-~~-~-~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~-l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 524 SVRRMSLMNNK-IE-H-IAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSS-LSKLPSSIGELVHLRY 599 (889)
T ss_pred heeEEEEeccc-hh-h-ccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCc-cCcCChHHhhhhhhhc
Confidence 46777777664 11 1 11223566788888888752 4444555577888999999998843 3556777888888889
Q ss_pred EEccCCCCChhHHHHhcCCCCCCEEEcCCCCCChhhHHHhhcCCCCCEEEccCCc--cCccchHhhcCCCCCCeeecccc
Q 007693 145 LWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQ--VSNRGAAVLKMFPRLSFLNLAWT 222 (593)
Q Consensus 145 L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~--l~~~~~~~l~~l~~L~~L~l~~n 222 (593)
|+++++.+.. .|..+++++.|.+|++..+.-....+.....+.+|++|.+.... .+......+..+.+|+.+.....
T Consensus 600 L~L~~t~I~~-LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 600 LDLSDTGISH-LPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITIS 678 (889)
T ss_pred ccccCCCccc-cchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecc
Confidence 9998888874 46668888888999888876554456666778888888886653 22233334455555555555433
Q ss_pred CC---cCCCCCCCCc----EEEcCCCcccchhcccCCCCCcceEeccCccccc
Q 007693 223 GV---TKLPNISSLE----CLNLSNCTIDSILEGNENKAPLAKISLAGTTFIN 268 (593)
Q Consensus 223 ~l---~~l~~l~~L~----~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~~~~ 268 (593)
.. ..+..++.|. .+.+.++.....+..+..+.+|+.|.+.++...+
T Consensus 679 s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 679 SVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred hhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCch
Confidence 32 1222222222 2333334444455555667777777777776654
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.90 E-value=8.8e-10 Score=79.34 Aligned_cols=61 Identities=26% Similarity=0.396 Sum_probs=43.8
Q ss_pred CccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCccc
Q 007693 411 NHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVL 471 (593)
Q Consensus 411 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 471 (593)
++|++|++++|+++...+..|..+++|++|++++|+++.+.+..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3567777777777776666677777777777777777777777777777777777777764
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.89 E-value=1.6e-10 Score=118.65 Aligned_cols=223 Identities=25% Similarity=0.278 Sum_probs=108.4
Q ss_pred CCCCCCCcEEEcCCCcccchhcccCCCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcchhhhcccCCCccEE
Q 007693 227 LPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHL 306 (593)
Q Consensus 227 l~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L 306 (593)
+..+++|+.|++.+|.+..+...+..+++|+.|++++|.++.+... ..++.|+.|++++|.++.+..+..++.|+.+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l---~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l 167 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGL---STLTLLKELNLSGNLISDISGLESLKSLKLL 167 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccch---hhccchhhheeccCcchhccCCccchhhhcc
Confidence 3445556666666666655543344455555555555555443321 1334455555555555555555555555555
Q ss_pred EccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCc
Q 007693 307 DLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTD 386 (593)
Q Consensus 307 ~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~ 386 (593)
++++|.++..... . ...+.+++.+.+.+|.+.... .+..+..+..+++..|.
T Consensus 168 ~l~~n~i~~ie~~------------------------~--~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~ 219 (414)
T KOG0531|consen 168 DLSYNRIVDIEND------------------------E--LSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNK 219 (414)
T ss_pred cCCcchhhhhhhh------------------------h--hhhccchHHHhccCCchhccc--chHHHHHHHHhhccccc
Confidence 5555555443331 1 123444555555555443221 11222233333455555
Q ss_pred cCccccccccchhhhhhHHhhccCC--ccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEE
Q 007693 387 IKGFIQQVGAETDLVLSLTALQNLN--HLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNL 464 (593)
Q Consensus 387 i~~~~~~~~~~~~~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 464 (593)
+....+. ..+. .|+.+++++|.+... +..+..+..+..|++.+|++.... .+...+.+..+
T Consensus 220 i~~~~~l--------------~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~ 282 (414)
T KOG0531|consen 220 ISKLEGL--------------NELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSEL 282 (414)
T ss_pred ceeccCc--------------ccchhHHHHHHhcccCccccc-cccccccccccccchhhccccccc--cccccchHHHh
Confidence 4432211 1111 256666666666542 144555566666666666665432 34445555566
Q ss_pred EecCcccCccc---cc-CccCCCCCceEecCCCccCC
Q 007693 465 SIRDAVLTNSG---LG-SFKPPRSLKLLDLHGGWLLT 497 (593)
Q Consensus 465 ~L~~n~l~~~~---~~-~~~~~~~L~~L~l~~n~~~~ 497 (593)
....|.+.... .. .....+.+..+.+.+|+...
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 283 WLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred ccCcchhcchhhhhccccccccccccccccccCcccc
Confidence 66666655321 11 12334666777777776633
No 44
>PLN03150 hypothetical protein; Provisional
Probab=98.86 E-value=4e-09 Score=113.30 Aligned_cols=110 Identities=20% Similarity=0.243 Sum_probs=99.9
Q ss_pred CCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccc
Q 007693 352 NLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPL 431 (593)
Q Consensus 352 ~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 431 (593)
.++.|+|++|.+.+..|..++.+++|+.|+|++|.+.+.+|. .+..+++|+.|+|++|++++.+|..+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~------------~~~~l~~L~~LdLs~N~lsg~iP~~l 486 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP------------SLGSITSLEVLDLSYNSFNGSIPESL 486 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCCh------------HHhCCCCCCEEECCCCCCCCCCchHH
Confidence 378999999999998899999999999999999999998887 69999999999999999999999999
Q ss_pred cCCCCCcEEecCCCCCCchhHHhhhcC-CCCcEEEecCcccCc
Q 007693 432 STFKELIHLSLRNASLTDVSLHQLSSL-SKLTNLSIRDAVLTN 473 (593)
Q Consensus 432 ~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~ 473 (593)
+.+++|+.|+|++|++++..|..+... .++..+++.+|....
T Consensus 487 ~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 487 GQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred hcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCcccc
Confidence 999999999999999999999888764 567889999987543
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.84 E-value=2.2e-10 Score=117.58 Aligned_cols=194 Identities=24% Similarity=0.266 Sum_probs=143.2
Q ss_pred cCCCccEEeccCCCcchhhh-cccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcE
Q 007693 277 ETSLLSFLDVSNSSLSRFCF-LTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEI 355 (593)
Q Consensus 277 ~~~~L~~L~ls~n~l~~~~~-l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~ 355 (593)
.+.+|+.+++.+|.+..+.. +..+++|++|++++|.|++.. .+..+ +.|+.|++++|.+++.... ..++.|+.
T Consensus 93 ~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l-~~L~~L~l~~N~i~~~~~~---~~l~~L~~ 166 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE--GLSTL-TLLKELNLSGNLISDISGL---ESLKSLKL 166 (414)
T ss_pred cccceeeeeccccchhhcccchhhhhcchheecccccccccc--chhhc-cchhhheeccCcchhccCC---ccchhhhc
Confidence 45677777777777777755 777888888888888877533 23333 5688888888887765432 33789999
Q ss_pred EEccCCCCChHHH-HHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCC
Q 007693 356 LSLSGTQIDDYAI-SYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTF 434 (593)
Q Consensus 356 L~l~~n~i~~~~~-~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 434 (593)
+++++|.+..... . ...+.+++.+++.+|.+.... .+..+..+..+++..|.++... .+..+
T Consensus 167 l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~--------------~~~~~~~l~~~~l~~n~i~~~~--~l~~~ 229 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE--------------GLDLLKKLVLLSLLDNKISKLE--GLNEL 229 (414)
T ss_pred ccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc--------------chHHHHHHHHhhcccccceecc--Ccccc
Confidence 9999999987765 3 477899999999999987543 2344455666688999888643 33334
Q ss_pred CC--CcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcccccCccCCCCCceEecCCCccC
Q 007693 435 KE--LIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLL 496 (593)
Q Consensus 435 ~~--L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~ 496 (593)
.. |+.+++++|.+.... ..+..++.+..|++.+|++... ..+...+.+..+....|++.
T Consensus 230 ~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 230 VMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLA 290 (414)
T ss_pred hhHHHHHHhcccCcccccc-ccccccccccccchhhcccccc--ccccccchHHHhccCcchhc
Confidence 44 899999999998742 5678899999999999999875 34455678888888888874
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.83 E-value=1.7e-09 Score=98.88 Aligned_cols=162 Identities=16% Similarity=0.190 Sum_probs=84.6
Q ss_pred CCCCCcEEEcCCCcccchhccc-CCCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcchh-----hhcccCCC
Q 007693 229 NISSLECLNLSNCTIDSILEGN-ENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF-----CFLTQMKA 302 (593)
Q Consensus 229 ~l~~L~~L~l~~n~l~~l~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-----~~l~~~~~ 302 (593)
++|.|+.|+++.|.+....... ....+|+.|.+.|..+......-....+|.++.+.+|.|++..+ ..-..-+.
T Consensus 95 ~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~ 174 (418)
T KOG2982|consen 95 QLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTE 174 (418)
T ss_pred cCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchh
Confidence 4445555555555444222222 24455666666665554322222334566777777777754433 11123345
Q ss_pred ccEEEccCCCCChh-HHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChH-HHHHhhcCCCCCEE
Q 007693 303 LEHLDLSSSMIGDD-SVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDY-AISYMSMMPSLKFI 380 (593)
Q Consensus 303 L~~L~L~~n~l~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~l~~~~~L~~L 380 (593)
+.+++...|...-. ....+...++++..+.+..|.+.+.....-...+|.+..|+++.++|.+- ..+.+.++++|+.|
T Consensus 175 v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dl 254 (418)
T KOG2982|consen 175 VLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDL 254 (418)
T ss_pred hhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhhee
Confidence 66666666543211 11122333467777777777666554444334566666777777766542 23455566777777
Q ss_pred EeeCCccCcc
Q 007693 381 DISNTDIKGF 390 (593)
Q Consensus 381 ~Ls~n~i~~~ 390 (593)
.++++.+.+.
T Consensus 255 Rv~~~Pl~d~ 264 (418)
T KOG2982|consen 255 RVSENPLSDP 264 (418)
T ss_pred eccCCccccc
Confidence 7777666543
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.76 E-value=2.3e-08 Score=90.41 Aligned_cols=93 Identities=22% Similarity=0.169 Sum_probs=60.6
Q ss_pred HhhhCCCCCcEEecCCCCCCChhhHHhhc----CCCCCcEEEccCCCC---ChhH-------HHHhcCCCCCCEEEcCCC
Q 007693 109 WALTGMTCLKELDLSRCVKVTDAGMKHLL----SISTLEKLWLSETGL---TADG-------IALLSSLQNLSVLDLGGL 174 (593)
Q Consensus 109 ~~l~~l~~L~~L~L~~~~~l~~~~~~~l~----~~~~L~~L~L~~~~~---~~~~-------~~~l~~l~~L~~L~L~~n 174 (593)
..+..+..+..++||+| .+......+++ +-++|+..+++.-.. .... ..++.+||+|+.++|+.|
T Consensus 24 eel~~~d~~~evdLSGN-tigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN 102 (388)
T COG5238 24 EELEMMDELVEVDLSGN-TIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN 102 (388)
T ss_pred HHHHhhcceeEEeccCC-cccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence 34556788999999999 57766666655 446788777765421 1111 234567788888888888
Q ss_pred CCChhhHHHh----hcCCCCCEEEccCCccCc
Q 007693 175 PVTDLVLRSL----QVLTKLEYLDLWGSQVSN 202 (593)
Q Consensus 175 ~l~~~~~~~l----~~l~~L~~L~L~~n~l~~ 202 (593)
.+....+..+ +..+.|++|.+++|.+..
T Consensus 103 Afg~~~~e~L~d~is~~t~l~HL~l~NnGlGp 134 (388)
T COG5238 103 AFGSEFPEELGDLISSSTDLVHLKLNNNGLGP 134 (388)
T ss_pred ccCcccchHHHHHHhcCCCceeEEeecCCCCc
Confidence 7665544433 456777777777776543
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.68 E-value=3.4e-08 Score=89.29 Aligned_cols=206 Identities=18% Similarity=0.209 Sum_probs=123.1
Q ss_pred hhcccCCCccEEEccCCCCChhHHHHHHhc---cCCCcEEEcCCCCCCCchHHHH------------HcCCCCCcEEEcc
Q 007693 295 CFLTQMKALEHLDLSSSMIGDDSVEMVACV---GANLRNLNLSNTRFSSAGVGIL------------AGHLPNLEILSLS 359 (593)
Q Consensus 295 ~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~---~~~L~~L~l~~n~l~~~~~~~~------------~~~~~~L~~L~l~ 359 (593)
+++..||+|+..+||+|.+....+..+..+ ...|++|.+++|.+....-..+ ++.-|.|+++...
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 345556666666666666554444333222 1556666666665543322211 1244677888777
Q ss_pred CCCCChHH----HHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCcc----ccc
Q 007693 360 GTQIDDYA----ISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATL----FPL 431 (593)
Q Consensus 360 ~n~i~~~~----~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~ 431 (593)
.|++..-. ...+..-..|+.+.+..|.|... +..+.....+..+.+|+.|||..|-++.... ..+
T Consensus 166 rNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpe-------gv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al 238 (388)
T COG5238 166 RNRLENGSKELSAALLESHENLKEVKIQQNGIRPE-------GVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADAL 238 (388)
T ss_pred cchhccCcHHHHHHHHHhhcCceeEEeeecCcCcc-------hhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHh
Confidence 77664322 22233346788888888876532 1112222346677888888888888775332 234
Q ss_pred cCCCCCcEEecCCCCCCchhHHhh------hcCCCCcEEEecCcccCcccccC-----c--cCCCCCceEecCCCccCCH
Q 007693 432 STFKELIHLSLRNASLTDVSLHQL------SSLSKLTNLSIRDAVLTNSGLGS-----F--KPPRSLKLLDLHGGWLLTE 498 (593)
Q Consensus 432 ~~l~~L~~L~L~~n~l~~~~~~~l------~~l~~L~~L~L~~n~l~~~~~~~-----~--~~~~~L~~L~l~~n~~~~~ 498 (593)
...+.|+.|.+..|-++..+...+ ...|+|..|-..+|.+.+-.... + ...|-|..|.+.||.+...
T Consensus 239 ~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~ 318 (388)
T COG5238 239 CEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKEL 318 (388)
T ss_pred cccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhH
Confidence 456778999999988876544433 23688888888888866643222 2 2247888999999999666
Q ss_pred HHHHHHHhh
Q 007693 499 DAILQFCKM 507 (593)
Q Consensus 499 ~~~~~~~~~ 507 (593)
.....+.+.
T Consensus 319 ~d~~d~~~~ 327 (388)
T COG5238 319 ADFGDYYED 327 (388)
T ss_pred HHHHHHHHH
Confidence 665555443
No 49
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.68 E-value=7.1e-09 Score=113.83 Aligned_cols=296 Identities=22% Similarity=0.218 Sum_probs=141.1
Q ss_pred CCCCCcEEecCCCCC-CChhhHHhhcCCCCCcEEEccCCCCChhHHHHhcCCCCCCEEEcCCCCCChhhHHHhhcCCCCC
Q 007693 113 GMTCLKELDLSRCVK-VTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLE 191 (593)
Q Consensus 113 ~l~~L~~L~L~~~~~-l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 191 (593)
.+++|++|-+.+|.. +.......|..++.|++|||++|.--+..|..++.+-+|++|+++++.+. ..|..++++..|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhh
Confidence 445666666666632 33434444556677777777766444455666666666777777766666 3556666666677
Q ss_pred EEEccCCccCccchHhhcCCCCCCeeeccccCCc-------CCCCCCCCcEEEcCCCcccchhcccCCCCCcceEeccCc
Q 007693 192 YLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVT-------KLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGT 264 (593)
Q Consensus 192 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-------~l~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n 264 (593)
+|++..+.-....+.....+++|++|.+...... .+.++..|+.+....... .+...+..+..|.
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~------- 693 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLR------- 693 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHH-------
Confidence 7766665433333444455666666665543211 122233333333322111 0101111111111
Q ss_pred cccchhhHHhhhcCCCccEEeccCCCcchh-hhcccCCCccEEEccCCCCChhHHHHHH-----hccCCCcEEEcCCCCC
Q 007693 265 TFINEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVA-----CVGANLRNLNLSNTRF 338 (593)
Q Consensus 265 ~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~l~~~~~L~~L~L~~n~l~~~~~~~~~-----~~~~~L~~L~l~~n~l 338 (593)
...+.+.+.++..... ..+..+.+|+.|.+.++.+.+....... ..++++..+...++..
T Consensus 694 --------------~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~ 759 (889)
T KOG4658|consen 694 --------------SLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHM 759 (889)
T ss_pred --------------HHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccc
Confidence 0111122122222222 4555667777777777666532221100 0012333333333322
Q ss_pred CCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccc-cccccchhhhhhHHhhccCCccCEEe
Q 007693 339 SSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFI-QQVGAETDLVLSLTALQNLNHLERLN 417 (593)
Q Consensus 339 ~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~-~~~~~~~~~~~~~~~~~~l~~L~~L~ 417 (593)
....... .-.|+|+.|.+..+...+.+......+..+..+.+..+.+.+.. -. ..++++++..+.
T Consensus 760 ~r~l~~~--~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~------------~l~~l~~i~~~~ 825 (889)
T KOG4658|consen 760 LRDLTWL--LFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLC------------SLGGLPQLYWLP 825 (889)
T ss_pred ccccchh--hccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeee------------cCCCCceeEecc
Confidence 1111111 12567888888777655444433444555555555555555441 22 355566666666
Q ss_pred cCCCCcCCCcccc---ccCCCCCcEEecCCC
Q 007693 418 LEQTQVSDATLFP---LSTFKELIHLSLRNA 445 (593)
Q Consensus 418 L~~n~l~~~~~~~---~~~l~~L~~L~L~~n 445 (593)
+.+-.+....... .+.+|.+..+.+.+|
T Consensus 826 l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~ 856 (889)
T KOG4658|consen 826 LSFLKLEELIVEECPKLGKLPLLSTLTIVGC 856 (889)
T ss_pred cCccchhheehhcCcccccCccccccceecc
Confidence 6554444322222 345666667777665
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.63 E-value=1.7e-09 Score=110.09 Aligned_cols=132 Identities=22% Similarity=0.252 Sum_probs=100.3
Q ss_pred CCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccc
Q 007693 352 NLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPL 431 (593)
Q Consensus 352 ~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 431 (593)
.|...+.++|.+... ...+.-++.|+.|+|++|++.... .+..|+.|++|||++|.++.+.--..
T Consensus 165 ~L~~a~fsyN~L~~m-D~SLqll~ale~LnLshNk~~~v~--------------~Lr~l~~LkhLDlsyN~L~~vp~l~~ 229 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLM-DESLQLLPALESLNLSHNKFTKVD--------------NLRRLPKLKHLDLSYNCLRHVPQLSM 229 (1096)
T ss_pred hHhhhhcchhhHHhH-HHHHHHHHHhhhhccchhhhhhhH--------------HHHhcccccccccccchhccccccch
Confidence 577788888887643 345666789999999999987542 57889999999999999887543334
Q ss_pred cCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCccccc-CccCCCCCceEecCCCccCCHHHH
Q 007693 432 STFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLG-SFKPPRSLKLLDLHGGWLLTEDAI 501 (593)
Q Consensus 432 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~ 501 (593)
..+. |+.|.+++|.++.. ..+.++.+|+.||+++|-|.+...- -+..+..|+.|.|.|||+.|....
T Consensus 230 ~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~h 297 (1096)
T KOG1859|consen 230 VGCK-LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPWH 297 (1096)
T ss_pred hhhh-heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHHH
Confidence 4555 99999999998874 3688999999999999998875221 122247889999999999665443
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=1.8e-08 Score=92.33 Aligned_cols=206 Identities=19% Similarity=0.181 Sum_probs=114.3
Q ss_pred CCCcEEEccCCCCChhHH-HHhc-CCCCCCEEEcCCCCCChhh--HHHhhcCCCCCEEEccCCccCccchHhhcCCCCCC
Q 007693 140 STLEKLWLSETGLTADGI-ALLS-SLQNLSVLDLGGLPVTDLV--LRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLS 215 (593)
Q Consensus 140 ~~L~~L~L~~~~~~~~~~-~~l~-~l~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 215 (593)
..++.|.+.++.|...+. ..|+ .++.++.+||.+|.|++.. ...+.+++.|+.|+++.|.+...+...-....+|+
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR 124 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence 345566677776665443 2333 5678888888888887642 23346778888888888777644322112444666
Q ss_pred eeeccccCCc------CCCCCCCCcEEEcCCCcccchhcccCCCCCcceEeccCccccchhhHHhhhcCCCccEEeccCC
Q 007693 216 FLNLAWTGVT------KLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNS 289 (593)
Q Consensus 216 ~L~l~~n~l~------~l~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n 289 (593)
+|-+.+..+. .+..+|.++.|.++.|.+.. +.+..+....+ -+.+.+|....|
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq-------------~n~Dd~c~e~~--------s~~v~tlh~~~c 183 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQ-------------LNLDDNCIEDW--------STEVLTLHQLPC 183 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhh-------------hcccccccccc--------chhhhhhhcCCc
Confidence 6666555443 12345555555555553321 11111111111 123344444444
Q ss_pred Ccchh----hhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCCh
Q 007693 290 SLSRF----CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDD 365 (593)
Q Consensus 290 ~l~~~----~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~ 365 (593)
..... .....+|++..+-+..|.+.+.....-....+.+--|+++.+.+.+.....-...+++|..|.++++.+.+
T Consensus 184 ~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 184 LEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred HHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 33222 12234577777777777666554443333336666777777777765544444668888888888887765
Q ss_pred H
Q 007693 366 Y 366 (593)
Q Consensus 366 ~ 366 (593)
.
T Consensus 264 ~ 264 (418)
T KOG2982|consen 264 P 264 (418)
T ss_pred c
Confidence 3
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.59 E-value=2.5e-09 Score=109.00 Aligned_cols=124 Identities=24% Similarity=0.310 Sum_probs=76.9
Q ss_pred CCCEEEcCCCCCChhhHHHhhcCCCCCEEEccCCccCccchHhhcCCCCCCeeeccccCCcCCCCC----CCCcEEEcCC
Q 007693 165 NLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNI----SSLECLNLSN 240 (593)
Q Consensus 165 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l----~~L~~L~l~~ 240 (593)
.|...+.++|.+.- ...++.-++.|+.|+|++|+++.. +.+..+++|++|||++|.+..+|.+ .+|+.|.+++
T Consensus 165 ~L~~a~fsyN~L~~-mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYNRLVL-MDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred hHhhhhcchhhHHh-HHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhhheeeeecc
Confidence 45555666665542 334555566777777777776644 3666677777777777777666633 2467777777
Q ss_pred CcccchhcccCCCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcc
Q 007693 241 CTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLS 292 (593)
Q Consensus 241 n~l~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~ 292 (593)
|.++++ .++.++.+|..|+++.|-+.+.......+.+..|+.|.|.+|.+.
T Consensus 242 N~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 242 NALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cHHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 766655 345566667777777776665544444455666677777776653
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.47 E-value=2.6e-07 Score=99.06 Aligned_cols=151 Identities=20% Similarity=0.338 Sum_probs=103.0
Q ss_pred CCccEEEecCCCCCChhHHHHHh-cCCCccEEEcCCCCccCchHHHh-hhCCCCCcEEecCCCCCCChhhHHhhcCCCCC
Q 007693 65 HNAEAIELRGENSVDAEWMAYLG-AFRYLRSLNVADCRRVTSSALWA-LTGMTCLKELDLSRCVKVTDAGMKHLLSISTL 142 (593)
Q Consensus 65 ~~L~~L~L~~~~~~~~~~~~~~~-~~~~L~~L~L~~~~~i~~~~~~~-l~~l~~L~~L~L~~~~~l~~~~~~~l~~~~~L 142 (593)
.+|+.||++|...+...|+..++ .+|.|++|.+++-. +....+.. ..++|+|..||+|++ .++. ...++++++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~-~~~~dF~~lc~sFpNL~sLDIS~T-nI~n--l~GIS~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQ-FDNDDFSQLCASFPNLRSLDISGT-NISN--LSGISRLKNL 197 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCce-ecchhHHHHhhccCccceeecCCC-CccC--cHHHhccccH
Confidence 56899999998777778887776 46999999998755 43333333 448899999999988 4555 3667788888
Q ss_pred cEEEccCCCCCh-hHHHHhcCCCCCCEEEcCCCCCChhh--H----HHhhcCCCCCEEEccCCccCccchHhh-cCCCCC
Q 007693 143 EKLWLSETGLTA-DGIALLSSLQNLSVLDLGGLPVTDLV--L----RSLQVLTKLEYLDLWGSQVSNRGAAVL-KMFPRL 214 (593)
Q Consensus 143 ~~L~L~~~~~~~-~~~~~l~~l~~L~~L~L~~n~l~~~~--~----~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L 214 (593)
++|.+.+-.+.. .....+-++++|+.||+|........ . +.-..+++|+.||.+++.+.......+ ..-++|
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L 277 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNL 277 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccH
Confidence 888888777664 23345667889999999875433221 1 222457888888888887776554433 334555
Q ss_pred Ceeec
Q 007693 215 SFLNL 219 (593)
Q Consensus 215 ~~L~l 219 (593)
+.+..
T Consensus 278 ~~i~~ 282 (699)
T KOG3665|consen 278 QQIAA 282 (699)
T ss_pred hhhhh
Confidence 54443
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.43 E-value=1.2e-06 Score=94.16 Aligned_cols=230 Identities=19% Similarity=0.266 Sum_probs=142.8
Q ss_pred hHHHHHHHHHHHhchhhHHhHhhhhcccccCchHHHHHHHHHHHHhcccC-hhhHhhh--cCCccEEEecCCCCCChhHH
Q 007693 7 SELVRLCIEAACQSGESVQKWRRQRRSLERLPAHLADSLLRHLIRRRLIF-PSLLEVF--KHNAEAIELRGENSVDAEWM 83 (593)
Q Consensus 7 ~~L~~~c~~~~~~~~~~~~~~~~~~~~l~~lp~~l~~~~l~~l~~~~~~~-p~~~~~~--~~~L~~L~L~~~~~~~~~~~ 83 (593)
++|.++-.+.+..... .-.+. ..-..+++...+.+...+....... +...... .-+++..++.+.. ......
T Consensus 3 ~sl~~~a~~~ia~~i~---ng~y~-~~~~~ld~~sSn~i~~~ll~~~~~~~~~~~~~~~~~f~ltki~l~~~~-~~~~~~ 77 (699)
T KOG3665|consen 3 SSLADIACQKIAEYIQ---NGSYN-NLQYELDPKSSNKIYSELLLKKFELTPEFLERIIRKFNLTKIDLKNVT-LQHQTL 77 (699)
T ss_pred CchhhhhHHHHHHHHh---cCCcc-ccceecChhhhHHHHHHHHhccCCCchhHHHhhhhhheeEEeecccee-cchhHH
Confidence 4556665555544421 11111 1233566666666666666533221 1111111 1258888888765 444455
Q ss_pred HHHhcCCCccEEEcCCCCccCchHHH-----------hhh---CCCCCcEEecCCCCCCChhhHHhhc-CCCCCcEEEcc
Q 007693 84 AYLGAFRYLRSLNVADCRRVTSSALW-----------ALT---GMTCLKELDLSRCVKVTDAGMKHLL-SISTLEKLWLS 148 (593)
Q Consensus 84 ~~~~~~~~L~~L~L~~~~~i~~~~~~-----------~l~---~l~~L~~L~L~~~~~l~~~~~~~l~-~~~~L~~L~L~ 148 (593)
..+.... |++|.|.+...+...... .+- .-.+|++||+++...+....+..++ .+|+|+.|.++
T Consensus 78 ~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~ 156 (699)
T KOG3665|consen 78 EMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVIS 156 (699)
T ss_pred HHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhccHHHHHhhhCcccceEEec
Confidence 5555555 999998875422221111 110 1258999999998777776677777 57999999999
Q ss_pred CCCCChhH-HHHhcCCCCCCEEEcCCCCCChhhHHHhhcCCCCCEEEccCCccCc-cchHhhcCCCCCCeeeccccCCcC
Q 007693 149 ETGLTADG-IALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSN-RGAAVLKMFPRLSFLNLAWTGVTK 226 (593)
Q Consensus 149 ~~~~~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~ 226 (593)
+-.+.... .....++|+|..||+++++++.. ..++.+++|+.|.+.+-.+.. .....+..+++|++||+|......
T Consensus 157 ~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~ 234 (699)
T KOG3665|consen 157 GRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNND 234 (699)
T ss_pred CceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccccccc
Confidence 88775544 34556899999999999988865 667888999999888766654 334466678888888888664332
Q ss_pred CC-----------CCCCCcEEEcCCCccc
Q 007693 227 LP-----------NISSLECLNLSNCTID 244 (593)
Q Consensus 227 l~-----------~l~~L~~L~l~~n~l~ 244 (593)
-+ .+|+|+.||.|+..+.
T Consensus 235 ~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 235 DTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred chHHHHHHHHhcccCccccEEecCCcchh
Confidence 11 3566777776666554
No 55
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.28 E-value=1.2e-06 Score=92.70 Aligned_cols=115 Identities=34% Similarity=0.423 Sum_probs=69.2
Q ss_pred HhcCCCccEEEcCCCCccCchHHHhhh-CCCCCcEEecCCC-CCCChhh---HHhhcCCCCCcEEEccCCC-CChhHHHH
Q 007693 86 LGAFRYLRSLNVADCRRVTSSALWALT-GMTCLKELDLSRC-VKVTDAG---MKHLLSISTLEKLWLSETG-LTADGIAL 159 (593)
Q Consensus 86 ~~~~~~L~~L~L~~~~~i~~~~~~~l~-~l~~L~~L~L~~~-~~l~~~~---~~~l~~~~~L~~L~L~~~~-~~~~~~~~ 159 (593)
...++.|+.|.+.+|..+.+.....+. .+++|+.|+++++ ....... ......++.|+.|+++++. +++....+
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 344677777777777666655444433 6777777777762 2222211 1222345777777777776 66666555
Q ss_pred hcC-CCCCCEEEcCCCC-CChhhHHHh-hcCCCCCEEEccCCcc
Q 007693 160 LSS-LQNLSVLDLGGLP-VTDLVLRSL-QVLTKLEYLDLWGSQV 200 (593)
Q Consensus 160 l~~-l~~L~~L~L~~n~-l~~~~~~~l-~~l~~L~~L~L~~n~l 200 (593)
++. |++|++|.+.++. +++.....+ ..+++|++|+++++..
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 553 6777777766665 555544444 4566777777776643
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.25 E-value=8.7e-08 Score=77.63 Aligned_cols=129 Identities=24% Similarity=0.246 Sum_probs=90.7
Q ss_pred CCcEEEccCCCCChH--HHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccc
Q 007693 352 NLEILSLSGTQIDDY--AISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLF 429 (593)
Q Consensus 352 ~L~~L~l~~n~i~~~--~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 429 (593)
.+..++|+.|++..+ .+..+.....|+.++|++|.+..+++. .-...+.++.|+|++|.+++ +|.
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~k------------ft~kf~t~t~lNl~~neisd-vPe 94 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKK------------FTIKFPTATTLNLANNEISD-VPE 94 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHH------------Hhhccchhhhhhcchhhhhh-chH
Confidence 456677777766532 223344556777788888888777666 33455678888888888888 566
Q ss_pred cccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcccccCccCCCCCceEecCCCcc
Q 007693 430 PLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL 495 (593)
Q Consensus 430 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~ 495 (593)
.+..++.|+.|+++.|.+.. .|..+..+.++-.|+..+|.+..+..+.|. .......++.++++
T Consensus 95 E~Aam~aLr~lNl~~N~l~~-~p~vi~~L~~l~~Lds~~na~~eid~dl~~-s~~~al~~lgnepl 158 (177)
T KOG4579|consen 95 ELAAMPALRSLNLRFNPLNA-EPRVIAPLIKLDMLDSPENARAEIDVDLFY-SSLPALIKLGNEPL 158 (177)
T ss_pred HHhhhHHhhhcccccCcccc-chHHHHHHHhHHHhcCCCCccccCcHHHhc-cccHHHHHhcCCcc
Confidence 68888999999999988876 456666688888888888888877666332 23344445566665
No 57
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.21 E-value=1.4e-06 Score=92.16 Aligned_cols=109 Identities=28% Similarity=0.345 Sum_probs=72.3
Q ss_pred cCCCccEEeccCC-Cc---ch---hhhcccCCCccEEEccCCC-CChhHHHHHHhccCCCcEEEcCCCC-CCCchHHHHH
Q 007693 277 ETSLLSFLDVSNS-SL---SR---FCFLTQMKALEHLDLSSSM-IGDDSVEMVACVGANLRNLNLSNTR-FSSAGVGILA 347 (593)
Q Consensus 277 ~~~~L~~L~ls~n-~l---~~---~~~l~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~ 347 (593)
.++.|+.|+++++ .. .. ......+++|+.++++.+. +++.....+...|++|++|.+.+|. +++.+...+.
T Consensus 212 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~ 291 (482)
T KOG1947|consen 212 KCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIA 291 (482)
T ss_pred hCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHH
Confidence 4556666665542 11 01 1233456788888888876 8888888888777888888887776 7888888887
Q ss_pred cCCCCCcEEEccCCCCC-hH-HHHHhhcCCCCCEEEeeCC
Q 007693 348 GHLPNLEILSLSGTQID-DY-AISYMSMMPSLKFIDISNT 385 (593)
Q Consensus 348 ~~~~~L~~L~l~~n~i~-~~-~~~~l~~~~~L~~L~Ls~n 385 (593)
..++.|++|++++|... +. ......++++|+.+.+...
T Consensus 292 ~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 292 ERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred HhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence 88888888888887543 32 2222335777777655443
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.15 E-value=2.1e-06 Score=74.74 Aligned_cols=106 Identities=22% Similarity=0.300 Sum_probs=77.6
Q ss_pred CCCccEEeccCCCcchhhhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEE
Q 007693 278 TSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILS 357 (593)
Q Consensus 278 ~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ 357 (593)
......+|+++|.+...+.+..++.|.+|.+++|.|+...+.. ..+.++|+.|.+.+|.+...+--.-...||.|++|.
T Consensus 41 ~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L-~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDL-DTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccccceecccccchhhcccCCCccccceEEecCCcceeeccch-hhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 4567788999999988888999999999999999998765544 333488999999998876644322235688888888
Q ss_pred ccCCCCChHHH---HHhhcCCCCCEEEeeC
Q 007693 358 LSGTQIDDYAI---SYMSMMPSLKFIDISN 384 (593)
Q Consensus 358 l~~n~i~~~~~---~~l~~~~~L~~L~Ls~ 384 (593)
+-+|.+....- ..+..+|+|+.||+.+
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 88887764321 1234677777777755
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.11 E-value=4.7e-06 Score=72.58 Aligned_cols=100 Identities=17% Similarity=0.227 Sum_probs=78.2
Q ss_pred CCCeeeccccCCc---CCCCCCCCcEEEcCCCcccchhcccC-CCCCcceEeccCccccchhhHHhhhcCCCccEEeccC
Q 007693 213 RLSFLNLAWTGVT---KLPNISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSN 288 (593)
Q Consensus 213 ~L~~L~l~~n~l~---~l~~l~~L~~L~l~~n~l~~l~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~ 288 (593)
+...+|+++|.+. .+|.++.|..|.+..|.|+.|.+.+. .+++|..|.+.+|.+..+...-....+++|++|.+-+
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 4456666666554 36677888999999999998888887 6778999999999888776665666888999999988
Q ss_pred CCcchh-----hhcccCCCccEEEccCCC
Q 007693 289 SSLSRF-----CFLTQMKALEHLDLSSSM 312 (593)
Q Consensus 289 n~l~~~-----~~l~~~~~L~~L~L~~n~ 312 (593)
|.++.. ..+..+|+|+.||.++-.
T Consensus 123 Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 123 NPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred CchhcccCceeEEEEecCcceEeehhhhh
Confidence 888765 466778889999887743
No 60
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.02 E-value=5.8e-07 Score=72.98 Aligned_cols=61 Identities=20% Similarity=0.361 Sum_probs=27.3
Q ss_pred CCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccC
Q 007693 326 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIK 388 (593)
Q Consensus 326 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~ 388 (593)
..|+..++++|.+.+.+.... ..+|.++.|++++|.+.+.+.. ++.++.|+.|+++.|.+.
T Consensus 53 ~el~~i~ls~N~fk~fp~kft-~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFT-IKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPLN 113 (177)
T ss_pred ceEEEEecccchhhhCCHHHh-hccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCccc
Confidence 344444555555444433222 2344444555555544443322 444444444444444443
No 61
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.00 E-value=1e-05 Score=53.13 Aligned_cols=38 Identities=29% Similarity=0.485 Sum_probs=22.0
Q ss_pred CCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcc
Q 007693 436 ELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS 474 (593)
Q Consensus 436 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 474 (593)
+|++|++++|+|+++.+ .++++++|+.|++++|+|++.
T Consensus 2 ~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCCCC
Confidence 56666666666665433 466666666666666666643
No 62
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.94 E-value=1e-05 Score=53.08 Aligned_cols=38 Identities=34% Similarity=0.524 Sum_probs=22.4
Q ss_pred ccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCch
Q 007693 412 HLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDV 450 (593)
Q Consensus 412 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 450 (593)
+|++|++++|+|++ ++..++.+++|+.|++++|+++++
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCCC
Confidence 56666666666665 333466666666666666666653
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.70 E-value=4.5e-05 Score=64.43 Aligned_cols=119 Identities=20% Similarity=0.290 Sum_probs=45.0
Q ss_pred CCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCcc
Q 007693 349 HLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATL 428 (593)
Q Consensus 349 ~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 428 (593)
++.+|+.+.+.. .+.......|.++++|+.+.+.++ +...... .|.++++|+.+.+.+ .+.....
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~------------~F~~~~~l~~i~~~~-~~~~i~~ 74 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDN------------AFSNCKSLESITFPN-NLKSIGD 74 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TT------------TTTT-TT-EEEEETS-TT-EE-T
T ss_pred CCCCCCEEEECC-CeeEeChhhccccccccccccccc-cccccee------------eeecccccccccccc-ccccccc
Confidence 455555555553 344444445555555666665543 3333333 455555566666544 3333333
Q ss_pred ccccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcccccCccCCCCC
Q 007693 429 FPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSL 485 (593)
Q Consensus 429 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L 485 (593)
..|..+++|+.+++..+ +..+....|.++ +|+.+.+.. .+..+....|.++++|
T Consensus 75 ~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 75 NAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 44555555666665443 444444455554 555555554 3444444455555444
No 64
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.60 E-value=7e-06 Score=84.48 Aligned_cols=207 Identities=27% Similarity=0.279 Sum_probs=111.3
Q ss_pred CCEEEcCCCCCChhhHHH----hhcCCCCCEEEccCCccCccchHhhcC----C-CCCCeeeccccCCcCCCCCCCCcEE
Q 007693 166 LSVLDLGGLPVTDLVLRS----LQVLTKLEYLDLWGSQVSNRGAAVLKM----F-PRLSFLNLAWTGVTKLPNISSLECL 236 (593)
Q Consensus 166 L~~L~L~~n~l~~~~~~~----l~~l~~L~~L~L~~n~l~~~~~~~l~~----l-~~L~~L~l~~n~l~~l~~l~~L~~L 236 (593)
+..+.|.+|.+....... +.....|..|++++|.+.+.....+.. . ..+++|++..|.++...
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g-------- 160 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEG-------- 160 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccc--------
Confidence 777888888776654433 345677888888888877655444332 1 23444455544443211
Q ss_pred EcCCCcccchhcccCCCCCcceEeccCccccch-----hhHHh--hhcCCCccEEeccCCCcchh------hhcccCCC-
Q 007693 237 NLSNCTIDSILEGNENKAPLAKISLAGTTFINE-----REAFL--YIETSLLSFLDVSNSSLSRF------CFLTQMKA- 302 (593)
Q Consensus 237 ~l~~n~l~~l~~~~~~~~~L~~L~l~~n~~~~~-----~~~~~--~~~~~~L~~L~ls~n~l~~~------~~l~~~~~- 302 (593)
...+.+.+.....++.++++.|.+... +.... +....++++|.+++|.++.. ..+...+.
T Consensus 161 ------~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~ 234 (478)
T KOG4308|consen 161 ------AAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESL 234 (478)
T ss_pred ------hHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchh
Confidence 002333333444455555555544311 11110 11345566666666665533 23344444
Q ss_pred ccEEEccCCCCChhHHHHHHhcc----CCCcEEEcCCCCCCCchHHHHH---cCCCCCcEEEccCCCCChHHHHH----h
Q 007693 303 LEHLDLSSSMIGDDSVEMVACVG----ANLRNLNLSNTRFSSAGVGILA---GHLPNLEILSLSGTQIDDYAISY----M 371 (593)
Q Consensus 303 L~~L~L~~n~l~~~~~~~~~~~~----~~L~~L~l~~n~l~~~~~~~~~---~~~~~L~~L~l~~n~i~~~~~~~----l 371 (593)
+..+++..|.+.+.+...+.... ..+++++++.|.+++.+...+. ..++.++++.+++|.+.+..... .
T Consensus 235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l 314 (478)
T KOG4308|consen 235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEAL 314 (478)
T ss_pred hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHh
Confidence 66677777777766555444332 3457777787777775554332 34567778888888777554332 2
Q ss_pred hcCCCCCEEEeeCCc
Q 007693 372 SMMPSLKFIDISNTD 386 (593)
Q Consensus 372 ~~~~~L~~L~Ls~n~ 386 (593)
.....+..+-+.++.
T Consensus 315 ~~~~~~~~~~l~~~~ 329 (478)
T KOG4308|consen 315 ERKTPLLHLVLGGTG 329 (478)
T ss_pred hhcccchhhhccccC
Confidence 233445555555443
No 65
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.58 E-value=0.00045 Score=68.69 Aligned_cols=74 Identities=11% Similarity=0.134 Sum_probs=39.5
Q ss_pred cCCCccEEeccCCCcchhhhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCC-CCCCchHHHHHcCCCCCcE
Q 007693 277 ETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNT-RFSSAGVGILAGHLPNLEI 355 (593)
Q Consensus 277 ~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~L~~ 355 (593)
.+.+++.|++++|.++.++. -.++|++|.+++|.--...+..+ +++|++|++++| .+... .++|+.
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~--LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sL--------P~sLe~ 116 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV--LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGL--------PESVRS 116 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC--CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccccc--------ccccce
Confidence 35667777777776666652 23457777776643222222222 256667777666 33211 234666
Q ss_pred EEccCCCC
Q 007693 356 LSLSGTQI 363 (593)
Q Consensus 356 L~l~~n~i 363 (593)
|++..+..
T Consensus 117 L~L~~n~~ 124 (426)
T PRK15386 117 LEIKGSAT 124 (426)
T ss_pred EEeCCCCC
Confidence 66655443
No 66
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.57 E-value=0.00028 Score=70.05 Aligned_cols=35 Identities=11% Similarity=0.223 Sum_probs=19.2
Q ss_pred hhCCCCCcEEecCCCCCCChhhHHhhcCCCCCcEEEccCC
Q 007693 111 LTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSET 150 (593)
Q Consensus 111 l~~l~~L~~L~L~~~~~l~~~~~~~l~~~~~L~~L~L~~~ 150 (593)
+..|+++++|++++| .++... .+ ..+|++|.+++|
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP--~L--P~sLtsL~Lsnc 82 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLP--VL--PNELTEITIENC 82 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccC--CC--CCCCcEEEccCC
Confidence 445677777777777 343321 11 234666666654
No 67
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=7.7e-05 Score=65.25 Aligned_cols=84 Identities=30% Similarity=0.484 Sum_probs=63.0
Q ss_pred CccEEEecCCCCCChhHHHHHhcCCCccEEEcCCCCccCchHHHhhh-CCCCCcEEecCCCCCCChhhHHhhcCCCCCcE
Q 007693 66 NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALT-GMTCLKELDLSRCVKVTDAGMKHLLSISTLEK 144 (593)
Q Consensus 66 ~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~-~l~~L~~L~L~~~~~l~~~~~~~l~~~~~L~~ 144 (593)
.++.+|-+++. +..+-.+.+.+++.++.|.+.+|..+.+..++-++ -.++|+.|+|++|..+|+.+...+..+++|+.
T Consensus 102 ~IeaVDAsds~-I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 102 KIEAVDASDSS-IMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred eEEEEecCCch-HHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 37777777765 56666677777788888888888877777777776 45678888888888888888877777777777
Q ss_pred EEccCC
Q 007693 145 LWLSET 150 (593)
Q Consensus 145 L~L~~~ 150 (593)
|.+.+-
T Consensus 181 L~l~~l 186 (221)
T KOG3864|consen 181 LHLYDL 186 (221)
T ss_pred HHhcCc
Confidence 777654
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.38 E-value=5.5e-05 Score=69.03 Aligned_cols=104 Identities=29% Similarity=0.418 Sum_probs=58.5
Q ss_pred cCCCccEEeccCCCcchhhhcccCCCccEEEccCC--CCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCc
Q 007693 277 ETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSS--MIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLE 354 (593)
Q Consensus 277 ~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~L~~n--~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~ 354 (593)
.+..|+.+++.+..++.+..+..+++|++|.++.| .+.+ ....+...+++|+++++++|++.......-...+++|.
T Consensus 41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~-~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSG-GLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccc-cceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 34566666677777777766677777888888777 4432 23333333477777777777666422211123455666
Q ss_pred EEEccCCCCC---hHHHHHhhcCCCCCEEE
Q 007693 355 ILSLSGTQID---DYAISYMSMMPSLKFID 381 (593)
Q Consensus 355 ~L~l~~n~i~---~~~~~~l~~~~~L~~L~ 381 (593)
.|++.+|..+ +.--..|.-+++|++|+
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 6666666433 22223344455555544
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.31 E-value=3.5e-05 Score=70.50 Aligned_cols=99 Identities=25% Similarity=0.347 Sum_probs=63.7
Q ss_pred CccEEEecCCCCCChhHHHHHhcCCCccEEEcCCCCccCchHHHhhhCCCCCcEEecCCCCCCChhhHHhhcCCCCCcEE
Q 007693 66 NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKL 145 (593)
Q Consensus 66 ~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~~~~L~~L 145 (593)
+++.|+..||. +++ .....+++.|+.|.|+-|+ |+ .+..+..|.+|++|+|..|..-.-.....+.++++|+.|
T Consensus 20 ~vkKLNcwg~~-L~D--Isic~kMp~lEVLsLSvNk-Is--sL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 20 NVKKLNCWGCG-LDD--ISICEKMPLLEVLSLSVNK-IS--SLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HhhhhcccCCC-ccH--HHHHHhcccceeEEeeccc-cc--cchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 47778888886 433 2345577888888888777 55 455677888888888888732233445666677888888
Q ss_pred EccCCCCChhHH-----HHhcCCCCCCEEE
Q 007693 146 WLSETGLTADGI-----ALLSSLQNLSVLD 170 (593)
Q Consensus 146 ~L~~~~~~~~~~-----~~l~~l~~L~~L~ 170 (593)
+|..|...+... ..+.-+|+|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 887776554332 1334455555554
No 70
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.31 E-value=1.2e-05 Score=82.63 Aligned_cols=207 Identities=25% Similarity=0.278 Sum_probs=109.8
Q ss_pred ccEEeccCCCcchh------hhcccCCCccEEEccCCCCChhHHHHHHhcc----CCCcEEEcCCCCCCCchHHHHH---
Q 007693 281 LSFLDVSNSSLSRF------CFLTQMKALEHLDLSSSMIGDDSVEMVACVG----ANLRNLNLSNTRFSSAGVGILA--- 347 (593)
Q Consensus 281 L~~L~ls~n~l~~~------~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~----~~L~~L~l~~n~l~~~~~~~~~--- 347 (593)
+..+.+.+|.+..- ..+...+.|+.|++++|.+++.....+.... +.++.|++..|.+++.+...+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 66677777776543 4556677778888888877766665554432 3455667777777665443332
Q ss_pred cCCCCCcEEEccCCCCChHH----HHHhh----cCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCc-cCEEec
Q 007693 348 GHLPNLEILSLSGTQIDDYA----ISYMS----MMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNH-LERLNL 418 (593)
Q Consensus 348 ~~~~~L~~L~l~~n~i~~~~----~~~l~----~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~-L~~L~L 418 (593)
.....++.++++.|.+.... +..+. ...++++|.+++|.++...-. +-...+...++ +..|++
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~--------~l~~~l~~~~~~~~el~l 240 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCA--------LLDEVLASGESLLRELDL 240 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHH--------HHHHHHhccchhhHHHHH
Confidence 22456777777777664221 12222 245666666666665521110 01112344444 555666
Q ss_pred CCCCcCCCcc----ccccCC-CCCcEEecCCCCCCchhH----HhhhcCCCCcEEEecCcccCcccccC----ccCCCCC
Q 007693 419 EQTQVSDATL----FPLSTF-KELIHLSLRNASLTDVSL----HQLSSLSKLTNLSIRDAVLTNSGLGS----FKPPRSL 485 (593)
Q Consensus 419 ~~n~l~~~~~----~~~~~l-~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~~~~~~~----~~~~~~L 485 (593)
..|++.+... ..+..+ +.++.++++.|.|++... +.+..++.++.+.+++|.+.+..... +.....+
T Consensus 241 ~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~ 320 (478)
T KOG4308|consen 241 ASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPL 320 (478)
T ss_pred HhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccc
Confidence 6666654311 122333 455666666666654332 33444556666666666666543321 1222444
Q ss_pred ceEecCCCcc
Q 007693 486 KLLDLHGGWL 495 (593)
Q Consensus 486 ~~L~l~~n~~ 495 (593)
.++-+.++..
T Consensus 321 ~~~~l~~~~~ 330 (478)
T KOG4308|consen 321 LHLVLGGTGK 330 (478)
T ss_pred hhhhccccCc
Confidence 5555555544
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.26 E-value=0.00073 Score=56.95 Aligned_cols=108 Identities=22% Similarity=0.314 Sum_probs=71.1
Q ss_pred HHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCC
Q 007693 369 SYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT 448 (593)
Q Consensus 369 ~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 448 (593)
..|.++++|+.+.+.. .+...... .|.++++|+.+.+.++ +.......|..+++|+.+.+.+ .+.
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~------------~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~ 70 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGEN------------AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK 70 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TT------------TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-
T ss_pred HHHhCCCCCCEEEECC-CeeEeChh------------hccccccccccccccc-ccccceeeeecccccccccccc-ccc
Confidence 4577888999999875 45555444 6899989999999885 7776667788998899999976 666
Q ss_pred chhHHhhhcCCCCcEEEecCcccCcccccCccCCCCCceEecCCC
Q 007693 449 DVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGG 493 (593)
Q Consensus 449 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n 493 (593)
.+....|..+++|+.+++..+ +..+....|..+ .|+.+.+..+
T Consensus 71 ~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~~ 113 (129)
T PF13306_consen 71 SIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPSN 113 (129)
T ss_dssp EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TTB
T ss_pred ccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECCC
Confidence 666667888999999999876 777778888887 8999888763
No 72
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.17 E-value=4.7e-05 Score=69.68 Aligned_cols=101 Identities=23% Similarity=0.216 Sum_probs=52.1
Q ss_pred CCCccEEeccCCCcchhhhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEE
Q 007693 278 TSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILS 357 (593)
Q Consensus 278 ~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ 357 (593)
+.+.+.|+..+|.+.++..+..++.|+.|.|+-|.|+... .+..+ ..|++|+|..|.|.+..--....++|+|+.|.
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~--pl~rC-trLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA--PLQRC-TRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccch--hHHHH-HHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 3445555555666655555555666666666666555322 22222 55566666666555554444445566666666
Q ss_pred ccCCCCChHHH-----HHhhcCCCCCEEE
Q 007693 358 LSGTQIDDYAI-----SYMSMMPSLKFID 381 (593)
Q Consensus 358 l~~n~i~~~~~-----~~l~~~~~L~~L~ 381 (593)
|..|.-.+..+ ..+..+|+|+.||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 65554332211 2233455555554
No 73
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.15 E-value=0.00018 Score=65.77 Aligned_cols=57 Identities=23% Similarity=0.377 Sum_probs=30.9
Q ss_pred CCCCeeeccccCC---cCCCCCCCCcEEEcCCCc--cc-chhcccCCCCCcceEeccCccccc
Q 007693 212 PRLSFLNLAWTGV---TKLPNISSLECLNLSNCT--ID-SILEGNENKAPLAKISLAGTTFIN 268 (593)
Q Consensus 212 ~~L~~L~l~~n~l---~~l~~l~~L~~L~l~~n~--l~-~l~~~~~~~~~L~~L~l~~n~~~~ 268 (593)
..|+.+++.+..+ +.+|.+++|++|.++.|. +. +++.....+++|+++++++|++..
T Consensus 43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~ 105 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD 105 (260)
T ss_pred cchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc
Confidence 3344444444433 346677788888888883 33 233323344556666666655544
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.83 E-value=0.00069 Score=59.44 Aligned_cols=82 Identities=27% Similarity=0.365 Sum_probs=65.6
Q ss_pred CccEEEcCCCCccCchHHHhhhCCCCCcEEecCCCCCCChhhHHhhcC-CCCCcEEEccCC-CCChhHHHHhcCCCCCCE
Q 007693 91 YLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLS-ISTLEKLWLSET-GLTADGIALLSSLQNLSV 168 (593)
Q Consensus 91 ~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~-~~~L~~L~L~~~-~~~~~~~~~l~~l~~L~~ 168 (593)
.++.++-+++. |..+.++.+..++.++.|.+.+|..+.+-....+++ .++|+.|++++| .|++.+...+.++++|+.
T Consensus 102 ~IeaVDAsds~-I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 102 KIEAVDASDSS-IMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred eEEEEecCCch-HHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 46778888766 878888888888889999999888888877777775 478888888887 788777777778888888
Q ss_pred EEcCC
Q 007693 169 LDLGG 173 (593)
Q Consensus 169 L~L~~ 173 (593)
|.+.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 77765
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.16 E-value=0.037 Score=29.96 Aligned_cols=20 Identities=30% Similarity=0.351 Sum_probs=11.9
Q ss_pred CCcEEEecCcccCcccccCcc
Q 007693 460 KLTNLSIRDAVLTNSGLGSFK 480 (593)
Q Consensus 460 ~L~~L~L~~n~l~~~~~~~~~ 480 (593)
+|++||+++|+|+.+ |..|.
T Consensus 1 ~L~~Ldls~n~l~~i-p~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSI-PSSFS 20 (22)
T ss_dssp TESEEEETSSEESEE-GTTTT
T ss_pred CccEEECCCCcCEeC-Chhhc
Confidence 466777777777743 33344
No 76
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=94.14 E-value=0.054 Score=30.75 Aligned_cols=22 Identities=50% Similarity=0.896 Sum_probs=10.9
Q ss_pred CCCcEEecCCCCCCChhhHHhh
Q 007693 115 TCLKELDLSRCVKVTDAGMKHL 136 (593)
Q Consensus 115 ~~L~~L~L~~~~~l~~~~~~~l 136 (593)
++|++|+|++|..+++.+...+
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHH
Confidence 4455555555555555444443
No 77
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.91 E-value=0.031 Score=30.26 Aligned_cols=12 Identities=33% Similarity=0.548 Sum_probs=5.8
Q ss_pred cCEEecCCCCcC
Q 007693 413 LERLNLEQTQVS 424 (593)
Q Consensus 413 L~~L~L~~n~l~ 424 (593)
|++|++++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 444444444444
No 78
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=93.74 E-value=0.07 Score=30.28 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=20.3
Q ss_pred CCCccEEEcCCCCccCchHHHhhhC
Q 007693 89 FRYLRSLNVADCRRVTSSALWALTG 113 (593)
Q Consensus 89 ~~~L~~L~L~~~~~i~~~~~~~l~~ 113 (593)
|++|++|+|++|..+++..+..++.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 5789999999998898888777653
No 79
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.17 E-value=0.095 Score=26.28 Aligned_cols=14 Identities=43% Similarity=0.572 Sum_probs=4.9
Q ss_pred CCcEEEcCCCcccc
Q 007693 232 SLECLNLSNCTIDS 245 (593)
Q Consensus 232 ~L~~L~l~~n~l~~ 245 (593)
+|+.|++++|+++.
T Consensus 2 ~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 2 NLRTLDLSNNRLTS 15 (17)
T ss_dssp T-SEEEETSS--SS
T ss_pred ccCEEECCCCCCCC
Confidence 34444444444443
No 80
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=91.80 E-value=0.071 Score=64.67 Aligned_cols=47 Identities=13% Similarity=0.123 Sum_probs=42.4
Q ss_pred EecCcccCcccccCccCCCCCceEecCCCccCCHHHHHHHHhhCCcE
Q 007693 465 SIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRI 511 (593)
Q Consensus 465 ~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l 511 (593)
||++|+|+.+....|..+++|+.|+|++|++.|+|.+.||.+|+..-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~ 47 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEK 47 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHhc
Confidence 68899999998899999999999999999999999999998887543
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.26 E-value=0.18 Score=27.88 Aligned_cols=21 Identities=38% Similarity=0.544 Sum_probs=11.2
Q ss_pred CCccEEEccCCCCChhHHHHH
Q 007693 301 KALEHLDLSSSMIGDDSVEMV 321 (593)
Q Consensus 301 ~~L~~L~L~~n~l~~~~~~~~ 321 (593)
++|++|+|++|.+++.+...+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 456666666666666555544
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.75 E-value=0.17 Score=28.00 Aligned_cols=21 Identities=52% Similarity=0.654 Sum_probs=10.1
Q ss_pred CCCcEEEccCCCCChHHHHHh
Q 007693 351 PNLEILSLSGTQIDDYAISYM 371 (593)
Q Consensus 351 ~~L~~L~l~~n~i~~~~~~~l 371 (593)
++|++|++++|.|++.....+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 455555665555555544443
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.02 E-value=0.3 Score=27.56 Aligned_cols=15 Identities=33% Similarity=0.505 Sum_probs=6.6
Q ss_pred CCcEEecCCCCCCch
Q 007693 436 ELIHLSLRNASLTDV 450 (593)
Q Consensus 436 ~L~~L~L~~n~l~~~ 450 (593)
+|++|+|++|+|+.+
T Consensus 3 ~L~~L~L~~N~l~~l 17 (26)
T smart00369 3 NLRELDLSNNQLSSL 17 (26)
T ss_pred CCCEEECCCCcCCcC
Confidence 344444444444443
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.02 E-value=0.3 Score=27.56 Aligned_cols=15 Identities=33% Similarity=0.505 Sum_probs=6.6
Q ss_pred CCcEEecCCCCCCch
Q 007693 436 ELIHLSLRNASLTDV 450 (593)
Q Consensus 436 ~L~~L~L~~n~l~~~ 450 (593)
+|++|+|++|+|+.+
T Consensus 3 ~L~~L~L~~N~l~~l 17 (26)
T smart00370 3 NLRELDLSNNQLSSL 17 (26)
T ss_pred CCCEEECCCCcCCcC
Confidence 344444444444443
No 85
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.98 E-value=0.21 Score=28.19 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=17.8
Q ss_pred CCCCcEEEecCcccCcccccCcc
Q 007693 458 LSKLTNLSIRDAVLTNSGLGSFK 480 (593)
Q Consensus 458 l~~L~~L~L~~n~l~~~~~~~~~ 480 (593)
+++|+.|+|++|+|+.+++..|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 46788999999998887666553
No 86
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.98 E-value=0.21 Score=28.19 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=17.8
Q ss_pred CCCCcEEEecCcccCcccccCcc
Q 007693 458 LSKLTNLSIRDAVLTNSGLGSFK 480 (593)
Q Consensus 458 l~~L~~L~L~~n~l~~~~~~~~~ 480 (593)
+++|+.|+|++|+|+.+++..|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 46788999999998887666553
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=87.95 E-value=0.83 Score=26.38 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=16.7
Q ss_pred CCCceEecCCCccCCHHHHHHHHhhC
Q 007693 483 RSLKLLDLHGGWLLTEDAILQFCKMH 508 (593)
Q Consensus 483 ~~L~~L~l~~n~~~~~~~~~~~~~~~ 508 (593)
++|++|||++|.+ .+.+...+++.+
T Consensus 2 ~~L~~LdL~~N~i-~~~G~~~L~~~L 26 (28)
T smart00368 2 PSLRELDLSNNKL-GDEGARALAEAL 26 (28)
T ss_pred CccCEEECCCCCC-CHHHHHHHHHHh
Confidence 4677777777776 666666665543
No 88
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.18 E-value=0.016 Score=52.21 Aligned_cols=85 Identities=12% Similarity=0.121 Sum_probs=50.0
Q ss_pred CCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCcc
Q 007693 349 HLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATL 428 (593)
Q Consensus 349 ~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 428 (593)
.+...+.||++.|++.... ..|+.+..|.+|+++.|++.-.+.+ ++....+..+++..|..+. .|
T Consensus 40 ~~kr~tvld~~s~r~vn~~-~n~s~~t~~~rl~~sknq~~~~~~d-------------~~q~~e~~~~~~~~n~~~~-~p 104 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLG-KNFSILTRLVRLDLSKNQIKFLPKD-------------AKQQRETVNAASHKNNHSQ-QP 104 (326)
T ss_pred ccceeeeehhhhhHHHhhc-cchHHHHHHHHHhccHhhHhhChhh-------------HHHHHHHHHHHhhccchhh-CC
Confidence 3556666777666554322 2244455666667776666543333 5555556666666666555 45
Q ss_pred ccccCCCCCcEEecCCCCCC
Q 007693 429 FPLSTFKELIHLSLRNASLT 448 (593)
Q Consensus 429 ~~~~~l~~L~~L~L~~n~l~ 448 (593)
.+++..++++++++.+|.+.
T Consensus 105 ~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 105 KSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred ccccccCCcchhhhccCcch
Confidence 66666677777777666654
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=85.12 E-value=2.3 Score=42.93 Aligned_cols=68 Identities=18% Similarity=0.129 Sum_probs=39.5
Q ss_pred CcEEecCCCCCCchhH---HhhhcCCCCcEEEecCcccCccccc----CccCCCCCceEecCCCccCCHHHHHHHH
Q 007693 437 LIHLSLRNASLTDVSL---HQLSSLSKLTNLSIRDAVLTNSGLG----SFKPPRSLKLLDLHGGWLLTEDAILQFC 505 (593)
Q Consensus 437 L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~L~~n~l~~~~~~----~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 505 (593)
+..+.++.|.+..... ..+..-+.+..|++++|.....+.. .+..-.+++.+..+.|.. ....+....
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p-~~~gl~p~~ 489 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP-EDPGLGPRN 489 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCc-cccccchhh
Confidence 5566677776654222 2344567788888888887765433 333335677777777765 444443333
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=82.60 E-value=1.9 Score=24.81 Aligned_cols=22 Identities=36% Similarity=0.634 Sum_probs=13.4
Q ss_pred CCccEEEccCCCCChhHHHHHH
Q 007693 301 KALEHLDLSSSMIGDDSVEMVA 322 (593)
Q Consensus 301 ~~L~~L~L~~n~l~~~~~~~~~ 322 (593)
++|++|+|++|.+++.+...+.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~ 23 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALA 23 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHH
Confidence 4566666666666665555544
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=82.14 E-value=10 Score=38.55 Aligned_cols=101 Identities=18% Similarity=0.006 Sum_probs=45.6
Q ss_pred CCCcEEEccCCCCChhHHHHhcCCCCCCEEEcCCCCCChhhHHHhh---cCCCCCEEEccCCccCccchHhhcCC---CC
Q 007693 140 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQ---VLTKLEYLDLWGSQVSNRGAAVLKMF---PR 213 (593)
Q Consensus 140 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~---~l~~L~~L~L~~n~l~~~~~~~l~~l---~~ 213 (593)
+.+++++++.|.+....+..+..-. --+.++.|..+......+. .-..+.+++++.|...+.++..+..+ ..
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~--~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~v 242 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPG--NPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLV 242 (553)
T ss_pred chhhhhccCCCcccccCCccccCCC--CccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhh
Confidence 4566666666666554433222110 0044555554443322221 12346667777666655555433221 23
Q ss_pred CCeeeccccCCcC--------CCCCCCCcEEEcCCCc
Q 007693 214 LSFLNLAWTGVTK--------LPNISSLECLNLSNCT 242 (593)
Q Consensus 214 L~~L~l~~n~l~~--------l~~l~~L~~L~l~~n~ 242 (593)
++.++.+...+.. .+.-+++...+++.|.
T Consensus 243 l~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng 279 (553)
T KOG4242|consen 243 LFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNG 279 (553)
T ss_pred hhcccccccccchhhcccccccccccccchhhhccCC
Confidence 4444444443321 1233455555565554
No 92
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=81.70 E-value=0.051 Score=49.06 Aligned_cols=93 Identities=10% Similarity=0.128 Sum_probs=71.6
Q ss_pred HHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCC
Q 007693 367 AISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNAS 446 (593)
Q Consensus 367 ~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 446 (593)
....+..+...+.||++.|++...-.. |+-++.|..|+++.|.+.- .|..++....+..+++..|.
T Consensus 34 ~v~ei~~~kr~tvld~~s~r~vn~~~n-------------~s~~t~~~rl~~sknq~~~-~~~d~~q~~e~~~~~~~~n~ 99 (326)
T KOG0473|consen 34 PVREIASFKRVTVLDLSSNRLVNLGKN-------------FSILTRLVRLDLSKNQIKF-LPKDAKQQRETVNAASHKNN 99 (326)
T ss_pred chhhhhccceeeeehhhhhHHHhhccc-------------hHHHHHHHHHhccHhhHhh-ChhhHHHHHHHHHHHhhccc
Confidence 344566778889999998887544333 6667788889999888876 56778888888888888888
Q ss_pred CCchhHHhhhcCCCCcEEEecCcccCcc
Q 007693 447 LTDVSLHQLSSLSKLTNLSIRDAVLTNS 474 (593)
Q Consensus 447 l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 474 (593)
.+. .|..+...+.++++++.+|.+...
T Consensus 100 ~~~-~p~s~~k~~~~k~~e~k~~~~~~~ 126 (326)
T KOG0473|consen 100 HSQ-QPKSQKKEPHPKKNEQKKTEFFRK 126 (326)
T ss_pred hhh-CCccccccCCcchhhhccCcchHH
Confidence 776 567888899999999999886643
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=76.03 E-value=4.9 Score=41.56 Aligned_cols=80 Identities=21% Similarity=0.292 Sum_probs=46.9
Q ss_pred CCCCCcEEecCCCCCCchh--HHhhhcCCCCcEEEecCc--ccCcccccCccC--CCCCceEecCCCccCCH-----HHH
Q 007693 433 TFKELIHLSLRNASLTDVS--LHQLSSLSKLTNLSIRDA--VLTNSGLGSFKP--PRSLKLLDLHGGWLLTE-----DAI 501 (593)
Q Consensus 433 ~l~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~L~~n--~l~~~~~~~~~~--~~~L~~L~l~~n~~~~~-----~~~ 501 (593)
+.+.+..++|++|++..+. ...-...|+|+.|+|++| .+... ..+.. ...|++|-+.||++.+. ..+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv 293 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCTTFSDRSEYV 293 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCccccchhhhHHHH
Confidence 3455666777777655421 111234688888888888 44332 22222 35688999999998332 234
Q ss_pred HHHHhhCCcEEEE
Q 007693 502 LQFCKMHPRIEVW 514 (593)
Q Consensus 502 ~~~~~~~~~l~~~ 514 (593)
..+...+|++...
T Consensus 294 ~~i~~~FPKL~~L 306 (585)
T KOG3763|consen 294 SAIRELFPKLLRL 306 (585)
T ss_pred HHHHHhcchheee
Confidence 4445567776544
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=75.36 E-value=2.9 Score=43.14 Aligned_cols=38 Identities=18% Similarity=0.315 Sum_probs=17.6
Q ss_pred cCCCccEEEccCCCCChh-HHHHHHhccCCCcEEEcCCC
Q 007693 299 QMKALEHLDLSSSMIGDD-SVEMVACVGANLRNLNLSNT 336 (593)
Q Consensus 299 ~~~~L~~L~L~~n~l~~~-~~~~~~~~~~~L~~L~l~~n 336 (593)
+.+.+..++|++|++... ....+....|+|+.|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 345555555555554321 12223333355555555555
No 95
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=73.43 E-value=2.7 Score=23.80 Aligned_cols=15 Identities=13% Similarity=0.375 Sum_probs=9.9
Q ss_pred CCCcEEEecCcccCc
Q 007693 459 SKLTNLSIRDAVLTN 473 (593)
Q Consensus 459 ~~L~~L~L~~n~l~~ 473 (593)
.+|+.|++++|+|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 466777777777654
No 96
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=68.12 E-value=3.2 Score=23.44 Aligned_cols=17 Identities=47% Similarity=0.536 Sum_probs=11.0
Q ss_pred CCcEEEcCCCcccchhc
Q 007693 232 SLECLNLSNCTIDSILE 248 (593)
Q Consensus 232 ~L~~L~l~~n~l~~l~~ 248 (593)
.|+.|++++|+++++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 56666666666666654
No 97
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=31.91 E-value=49 Score=30.02 Aligned_cols=40 Identities=25% Similarity=0.304 Sum_probs=20.2
Q ss_pred CCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCC
Q 007693 301 KALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS 340 (593)
Q Consensus 301 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~ 340 (593)
.+++.-|+++..+.-.........|.+++--.+..|.+.+
T Consensus 171 a~lerADl~gsil~cA~L~~v~~lcaN~eGA~L~gcNfed 210 (302)
T KOG1665|consen 171 AKLERADLEGSILHCAILREVEMLCANAEGASLKGCNFED 210 (302)
T ss_pred hhhcccccccchhhhhhhhhhhheecccccccccCcCCCC
Confidence 4555555555444433444444444555555555555554
No 98
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=26.76 E-value=45 Score=42.15 Aligned_cols=33 Identities=9% Similarity=0.111 Sum_probs=28.8
Q ss_pred ecCCCCcCCCccccccCCCCCcEEecCCCCCCc
Q 007693 417 NLEQTQVSDATLFPLSTFKELIHLSLRNASLTD 449 (593)
Q Consensus 417 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 449 (593)
||++|+|+.+.+..|..+++|+.|+|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 688999999888889999999999999987664
Done!