Query 007693
Match_columns 593
No_of_seqs 504 out of 4898
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 08:08:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007693.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007693hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t6q_A CD180 antigen; protein- 100.0 3E-50 1E-54 436.3 19.1 470 24-509 14-573 (606)
2 3vq2_A TLR4, TOLL-like recepto 100.0 7.5E-49 2.6E-53 425.4 13.3 445 25-510 14-572 (606)
3 3rgz_A Protein brassinosteroid 100.0 6.2E-48 2.1E-52 427.6 16.3 423 65-495 223-716 (768)
4 3rgz_A Protein brassinosteroid 100.0 3.7E-48 1.3E-52 429.3 14.4 438 65-534 200-722 (768)
5 2z63_A TOLL-like receptor 4, v 100.0 7.4E-48 2.5E-52 414.7 13.5 436 24-504 9-539 (570)
6 2z81_A CD282 antigen, TOLL-lik 100.0 1.8E-44 6.1E-49 386.4 21.5 434 27-508 10-523 (549)
7 1ziw_A TOLL-like receptor 3; i 100.0 6.7E-45 2.3E-49 399.7 18.3 415 64-495 72-596 (680)
8 1ziw_A TOLL-like receptor 3; i 100.0 1.2E-44 4.2E-49 397.6 19.9 465 25-495 7-572 (680)
9 3t6q_A CD180 antigen; protein- 100.0 8.2E-44 2.8E-48 385.9 20.3 452 63-542 31-549 (606)
10 3j0a_A TOLL-like receptor 5; m 100.0 5.7E-45 2E-49 407.9 8.7 446 25-508 7-572 (844)
11 2z7x_B TOLL-like receptor 1, v 100.0 1.7E-43 5.8E-48 376.0 18.9 434 26-508 4-494 (520)
12 4g8a_A TOLL-like receptor 4; l 100.0 9.3E-44 3.2E-48 388.0 13.9 441 25-509 34-593 (635)
13 3vq2_A TLR4, TOLL-like recepto 100.0 8.3E-43 2.9E-47 377.9 19.2 406 67-496 13-534 (606)
14 4ecn_A Leucine-rich repeat pro 100.0 1.5E-42 5E-47 381.7 18.1 407 65-496 323-840 (876)
15 4eco_A Uncharacterized protein 100.0 1.1E-42 3.7E-47 376.8 15.4 409 65-497 81-601 (636)
16 4eco_A Uncharacterized protein 100.0 4.6E-42 1.6E-46 371.9 16.0 385 90-495 81-578 (636)
17 2z63_A TOLL-like receptor 4, v 100.0 8.6E-42 2.9E-46 367.5 12.4 388 64-474 51-533 (570)
18 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.1E-40 3.6E-45 357.5 18.3 433 25-506 34-520 (562)
19 4ecn_A Leucine-rich repeat pro 100.0 2.8E-40 9.7E-45 363.5 20.3 385 90-495 323-818 (876)
20 3j0a_A TOLL-like receptor 5; m 100.0 3.3E-41 1.1E-45 377.5 11.9 420 68-495 7-516 (844)
21 2z81_A CD282 antigen, TOLL-lik 100.0 8.1E-40 2.8E-44 350.3 21.7 441 65-541 5-498 (549)
22 3v47_A TOLL-like receptor 5B a 100.0 5.1E-39 1.8E-43 335.8 22.4 362 115-508 30-421 (455)
23 3v47_A TOLL-like receptor 5B a 100.0 1.3E-38 4.5E-43 332.6 18.2 390 25-474 13-410 (455)
24 2z7x_B TOLL-like receptor 1, v 100.0 4E-39 1.4E-43 342.3 11.9 405 23-474 22-483 (520)
25 1o6v_A Internalin A; bacterial 100.0 4.1E-36 1.4E-40 314.0 30.8 342 90-474 46-390 (466)
26 1o6v_A Internalin A; bacterial 100.0 6.2E-36 2.1E-40 312.7 29.7 343 113-497 44-389 (466)
27 1jl5_A Outer protein YOPM; leu 100.0 4E-37 1.4E-41 318.8 16.4 370 65-496 11-409 (454)
28 3ogk_B Coronatine-insensitive 100.0 1.3E-35 4.6E-40 320.6 26.4 417 64-513 72-542 (592)
29 1z7x_W Ribonuclease inhibitor; 100.0 1.1E-35 3.7E-40 311.1 24.0 405 65-514 3-460 (461)
30 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3E-36 1E-40 322.9 16.2 401 65-496 31-486 (562)
31 2p1m_B Transport inhibitor res 100.0 3E-35 1E-39 318.0 23.2 426 64-514 65-536 (594)
32 4g8a_A TOLL-like receptor 4; l 100.0 4.7E-35 1.6E-39 319.1 21.1 384 90-495 52-554 (635)
33 4fmz_A Internalin; leucine ric 100.0 1.3E-33 4.3E-38 283.9 28.8 305 137-495 41-345 (347)
34 2id5_A Lingo-1, leucine rich r 100.0 8.2E-35 2.8E-39 305.6 20.2 219 277-509 126-346 (477)
35 3bz5_A Internalin-J, INLJ; leu 100.0 3.1E-34 1.1E-38 297.4 22.4 262 87-392 39-303 (457)
36 4fmz_A Internalin; leucine ric 100.0 1.6E-33 5.6E-38 283.1 26.5 307 111-472 40-346 (347)
37 3ogk_B Coronatine-insensitive 100.0 4.4E-34 1.5E-38 308.7 22.7 408 68-511 53-515 (592)
38 1jl5_A Outer protein YOPM; leu 100.0 1.3E-34 4.4E-39 299.9 16.7 384 24-496 13-429 (454)
39 3o6n_A APL1; leucine-rich repe 100.0 1.1E-33 3.7E-38 288.9 22.5 316 139-504 44-360 (390)
40 1z7x_W Ribonuclease inhibitor; 100.0 2.1E-33 7.2E-38 293.8 23.9 375 90-509 3-423 (461)
41 3bz5_A Internalin-J, INLJ; leu 100.0 6.2E-34 2.1E-38 295.1 18.9 311 64-449 41-353 (457)
42 3o6n_A APL1; leucine-rich repe 100.0 2.3E-33 7.9E-38 286.5 18.6 333 113-497 43-375 (390)
43 2id5_A Lingo-1, leucine rich r 100.0 2E-34 6.8E-39 302.7 10.2 137 299-449 198-334 (477)
44 3oja_B Anopheles plasmodium-re 100.0 8.9E-33 3E-37 297.5 23.2 317 139-505 50-367 (597)
45 3oja_B Anopheles plasmodium-re 100.0 1.4E-32 4.8E-37 296.0 16.7 312 113-474 49-360 (597)
46 2p1m_B Transport inhibitor res 100.0 6.2E-30 2.1E-34 276.4 24.1 389 63-468 103-540 (594)
47 1xku_A Decorin; proteoglycan, 100.0 2.7E-29 9.3E-34 250.2 20.7 287 141-494 32-330 (330)
48 2ft3_A Biglycan; proteoglycan, 100.0 8.4E-30 2.9E-34 254.1 13.0 284 141-494 34-331 (332)
49 2z66_A Variable lymphocyte rec 100.0 7.5E-29 2.6E-33 244.3 10.9 256 215-509 10-274 (306)
50 3zyj_A Leucine-rich repeat-con 100.0 2.5E-28 8.4E-33 253.1 14.3 257 234-509 46-305 (440)
51 1ogq_A PGIP-2, polygalacturona 100.0 3.8E-29 1.3E-33 246.6 7.4 249 231-498 50-306 (313)
52 3zyi_A Leucine-rich repeat-con 100.0 3.4E-28 1.2E-32 253.0 14.8 257 234-509 57-316 (452)
53 2ft3_A Biglycan; proteoglycan, 100.0 3.3E-28 1.1E-32 242.5 13.9 287 91-470 34-331 (332)
54 2z80_A TOLL-like receptor 2, v 100.0 1.8E-28 6.2E-33 246.6 11.3 262 232-508 53-327 (353)
55 1ozn_A Reticulon 4 receptor; N 99.9 1.7E-28 5.8E-33 239.1 9.7 237 258-512 15-254 (285)
56 1xku_A Decorin; proteoglycan, 99.9 4.4E-27 1.5E-31 234.2 19.8 264 213-496 32-306 (330)
57 3o53_A Protein LRIM1, AGAP0063 99.9 3.6E-28 1.2E-32 240.3 8.2 267 142-476 12-280 (317)
58 1ogq_A PGIP-2, polygalacturona 99.9 1.5E-27 5.3E-32 235.1 6.0 241 65-311 50-301 (313)
59 2z66_A Variable lymphocyte rec 99.9 2.2E-26 7.6E-31 226.6 12.5 239 191-448 10-261 (306)
60 3g06_A SSPH2 (leucine-rich rep 99.9 5.4E-25 1.8E-29 234.6 24.0 243 212-504 61-304 (622)
61 3o53_A Protein LRIM1, AGAP0063 99.9 5.2E-26 1.8E-30 224.8 14.3 246 233-505 12-259 (317)
62 2z80_A TOLL-like receptor 2, v 99.9 2.1E-25 7E-30 224.3 18.8 284 113-451 29-317 (353)
63 3g06_A SSPH2 (leucine-rich rep 99.9 2.7E-25 9.3E-30 236.9 20.1 267 116-458 41-307 (622)
64 4fcg_A Uncharacterized protein 99.9 2E-25 6.8E-30 221.3 14.5 232 231-495 81-313 (328)
65 1ozn_A Reticulon 4 receptor; N 99.9 5.7E-25 1.9E-29 214.1 14.4 222 235-473 15-239 (285)
66 3zyj_A Leucine-rich repeat-con 99.9 9E-25 3.1E-29 226.4 16.7 241 215-472 46-292 (440)
67 3oja_A Leucine-rich immune mol 99.9 5.1E-25 1.7E-29 230.2 14.6 226 252-504 32-258 (487)
68 3zyi_A Leucine-rich repeat-con 99.9 1.1E-24 3.6E-29 226.7 16.2 240 216-472 58-303 (452)
69 1wwl_A Monocyte differentiatio 99.9 5E-26 1.7E-30 224.4 5.7 247 231-496 43-309 (312)
70 3oja_A Leucine-rich immune mol 99.9 8.9E-26 3.1E-30 236.0 7.9 235 165-467 35-270 (487)
71 2z62_A TOLL-like receptor 4, v 99.9 2E-25 6.9E-30 216.2 7.4 215 279-508 28-250 (276)
72 2o6q_A Variable lymphocyte rec 99.9 1.3E-24 4.3E-29 209.7 12.0 213 281-508 18-231 (270)
73 1wwl_A Monocyte differentiatio 99.9 5.7E-26 2E-30 223.9 1.6 247 184-474 39-311 (312)
74 1p9a_G Platelet glycoprotein I 99.9 3.2E-24 1.1E-28 208.6 12.6 213 278-509 9-221 (290)
75 4fcg_A Uncharacterized protein 99.9 4.5E-24 1.6E-28 211.5 11.6 233 187-474 80-316 (328)
76 2ast_B S-phase kinase-associat 99.9 5.9E-23 2E-27 205.0 19.4 235 279-538 70-315 (336)
77 2ca6_A RAN GTPase-activating p 99.9 4.9E-23 1.7E-27 209.6 18.6 254 82-361 24-340 (386)
78 3rfs_A Internalin B, repeat mo 99.9 4.2E-24 1.4E-28 206.2 9.8 229 279-542 19-248 (272)
79 2ca6_A RAN GTPase-activating p 99.9 1.4E-23 4.7E-28 213.7 12.4 199 297-508 90-329 (386)
80 3goz_A Leucine-rich repeat-con 99.9 1.1E-22 3.7E-27 204.9 17.9 164 301-496 109-297 (362)
81 2ast_B S-phase kinase-associat 99.9 3.7E-22 1.3E-26 199.2 20.9 258 189-481 48-315 (336)
82 3goz_A Leucine-rich repeat-con 99.9 2.2E-22 7.7E-27 202.6 15.3 246 70-342 3-300 (362)
83 2z62_A TOLL-like receptor 4, v 99.9 7.5E-23 2.6E-27 198.1 11.1 203 255-473 29-238 (276)
84 2o6q_A Variable lymphocyte rec 99.9 1.3E-22 4.3E-27 195.6 12.1 181 279-473 37-219 (270)
85 3rfs_A Internalin B, repeat mo 99.9 1E-22 3.5E-27 196.4 10.4 196 277-495 39-234 (272)
86 3m19_A Variable lymphocyte rec 99.9 3.4E-22 1.2E-26 190.4 13.4 191 301-508 14-205 (251)
87 1h6u_A Internalin H; cell adhe 99.9 1.9E-21 6.6E-26 190.9 16.3 191 277-495 39-229 (308)
88 4glp_A Monocyte differentiatio 99.9 1.7E-21 5.8E-26 191.8 13.3 226 255-496 65-307 (310)
89 1h6u_A Internalin H; cell adhe 99.8 1.3E-20 4.3E-25 185.1 17.1 195 230-476 40-234 (308)
90 1p9a_G Platelet glycoprotein I 99.8 2.9E-21 9.8E-26 187.7 12.1 202 229-473 8-209 (290)
91 4glp_A Monocyte differentiatio 99.8 9.7E-22 3.3E-26 193.5 8.8 219 91-315 65-308 (310)
92 2v9t_B SLIT homolog 2 protein 99.8 1E-20 3.6E-25 175.8 11.4 165 329-509 14-178 (220)
93 2xwt_C Thyrotropin receptor; s 99.8 2.1E-21 7.1E-26 183.6 6.6 195 280-494 32-237 (239)
94 3m19_A Variable lymphocyte rec 99.8 1.5E-20 5.1E-25 179.0 11.3 180 280-474 15-194 (251)
95 2v70_A SLIT-2, SLIT homolog 2 99.8 2.1E-20 7.1E-25 173.8 11.3 166 328-509 13-179 (220)
96 2xwt_C Thyrotropin receptor; s 99.8 6E-21 2E-25 180.4 5.3 194 255-469 32-236 (239)
97 2xot_A Amphoterin-induced prot 99.8 2.8E-20 9.4E-25 187.1 8.3 185 304-504 21-210 (361)
98 1h6t_A Internalin B; cell adhe 99.8 4E-19 1.4E-23 172.8 15.5 177 277-479 44-220 (291)
99 1h6t_A Internalin B; cell adhe 99.8 1E-19 3.4E-24 177.0 10.3 190 279-496 24-213 (291)
100 2o6s_A Variable lymphocyte rec 99.8 2.8E-19 9.4E-24 165.0 11.7 181 328-541 9-190 (208)
101 3e6j_A Variable lymphocyte rec 99.8 7.7E-19 2.6E-23 164.4 12.6 163 327-506 20-183 (229)
102 1m9s_A Internalin B; cell inva 99.8 1.3E-18 4.5E-23 185.2 14.5 198 256-482 23-220 (605)
103 1m9s_A Internalin B; cell inva 99.8 1E-18 3.6E-23 186.0 10.3 193 277-497 19-211 (605)
104 2o6s_A Variable lymphocyte rec 99.8 9.6E-19 3.3E-23 161.4 8.5 162 301-483 28-189 (208)
105 4ay9_X Follicle-stimulating ho 99.8 1.5E-19 5.1E-24 181.0 2.8 237 216-494 13-257 (350)
106 2v70_A SLIT-2, SLIT homolog 2 99.7 3.2E-18 1.1E-22 159.0 9.4 154 304-473 14-167 (220)
107 3cvr_A Invasion plasmid antige 99.7 7.2E-18 2.5E-22 177.5 12.9 194 233-459 61-254 (571)
108 4ay9_X Follicle-stimulating ho 99.7 8.6E-19 3E-23 175.4 5.0 192 191-388 12-215 (350)
109 1xeu_A Internalin C; cellular 99.7 2E-18 7E-23 165.0 6.5 171 278-475 18-188 (263)
110 4ezg_A Putative uncharacterize 99.7 1.5E-17 5.1E-22 151.8 11.3 149 326-495 44-193 (197)
111 3sb4_A Hypothetical leucine ri 99.7 7.6E-18 2.6E-22 167.1 9.4 125 351-490 202-328 (329)
112 3sb4_A Hypothetical leucine ri 99.7 1.1E-17 3.9E-22 165.8 10.3 280 163-466 24-328 (329)
113 2xot_A Amphoterin-induced prot 99.7 5.4E-18 1.9E-22 170.3 7.9 157 302-472 40-202 (361)
114 2v9t_B SLIT homolog 2 protein 99.7 1.2E-17 4.1E-22 155.1 9.3 153 304-473 14-166 (220)
115 4ezg_A Putative uncharacterize 99.7 1.8E-17 6.2E-22 151.2 10.0 153 299-473 42-195 (197)
116 1xeu_A Internalin C; cellular 99.7 2E-17 6.9E-22 158.1 10.1 170 299-497 17-186 (263)
117 3cvr_A Invasion plasmid antige 99.7 7.9E-17 2.7E-21 169.6 15.4 165 140-324 80-253 (571)
118 1w8a_A SLIT protein; signaling 99.7 8.5E-18 2.9E-22 152.6 6.8 143 353-509 10-152 (192)
119 2wfh_A SLIT homolog 2 protein 99.7 3.5E-17 1.2E-21 148.5 9.8 141 353-509 12-152 (193)
120 3e6j_A Variable lymphocyte rec 99.7 7.9E-17 2.7E-21 150.6 10.3 154 303-474 21-174 (229)
121 1dce_A Protein (RAB geranylger 99.7 1.3E-18 4.5E-23 184.1 -4.4 122 352-490 442-567 (567)
122 1dce_A Protein (RAB geranylger 99.7 5.1E-18 1.7E-22 179.6 -1.9 104 376-496 442-546 (567)
123 2o6r_A Variable lymphocyte rec 99.6 5.5E-16 1.9E-20 138.8 10.8 141 353-508 9-150 (177)
124 2ell_A Acidic leucine-rich nuc 99.6 3.2E-16 1.1E-20 139.0 5.8 133 326-473 24-161 (168)
125 2je0_A Acidic leucine-rich nuc 99.6 3.2E-16 1.1E-20 136.0 5.3 127 351-491 17-148 (149)
126 2ell_A Acidic leucine-rich nuc 99.6 9.7E-16 3.3E-20 135.9 6.5 133 349-495 22-159 (168)
127 1w8a_A SLIT protein; signaling 99.6 2.6E-15 9E-20 136.1 9.4 129 329-473 11-140 (192)
128 3un9_A NLR family member X1; l 99.6 1.8E-15 6E-20 151.7 8.7 187 301-495 72-282 (372)
129 4fs7_A Uncharacterized protein 99.6 5.7E-15 1.9E-19 150.2 11.7 334 103-488 59-393 (394)
130 2o6r_A Variable lymphocyte rec 99.6 1.1E-14 3.7E-19 130.3 10.4 132 327-474 8-139 (177)
131 3un9_A NLR family member X1; l 99.6 1.9E-15 6.4E-20 151.5 5.9 189 277-473 70-284 (372)
132 2je0_A Acidic leucine-rich nuc 99.6 2.5E-15 8.6E-20 130.3 6.0 128 326-468 17-149 (149)
133 2wfh_A SLIT homolog 2 protein 99.6 1.4E-14 4.9E-19 131.2 10.9 128 329-473 13-140 (193)
134 1a9n_A U2A', U2A'; complex (nu 99.5 3.5E-15 1.2E-19 133.3 6.1 131 349-495 17-152 (176)
135 4fdw_A Leucine rich hypothetic 99.5 3.5E-14 1.2E-18 143.6 13.7 263 187-495 112-382 (401)
136 4fs7_A Uncharacterized protein 99.5 1.4E-14 4.8E-19 147.2 9.1 325 83-464 64-393 (394)
137 3g39_A Variable lymphocyte rec 99.5 2.4E-14 8.3E-19 126.8 9.4 118 376-508 10-128 (170)
138 4b8c_D Glucose-repressible alc 99.5 4.6E-15 1.6E-19 162.0 4.0 173 207-388 219-404 (727)
139 1a9n_A U2A', U2A'; complex (nu 99.5 1.4E-14 4.9E-19 129.3 6.5 131 326-473 19-154 (176)
140 4fdw_A Leucine rich hypothetic 99.5 6.2E-14 2.1E-18 141.8 11.9 238 231-495 113-357 (401)
141 2r9u_A Variable lymphocyte rec 99.5 7.6E-14 2.6E-18 124.0 10.0 116 377-507 14-130 (174)
142 4b8c_D Glucose-repressible alc 99.5 4.8E-15 1.7E-19 161.9 2.3 137 229-393 222-359 (727)
143 1ds9_A Outer arm dynein; leuci 99.5 1.1E-15 3.7E-20 139.5 -4.4 150 326-495 18-184 (198)
144 4gt6_A Cell surface protein; l 99.4 1.5E-12 5.2E-17 132.2 14.3 331 106-495 54-390 (394)
145 1ds9_A Outer arm dynein; leuci 99.3 4.3E-14 1.5E-18 128.9 -2.0 110 183-316 43-155 (198)
146 3g39_A Variable lymphocyte rec 99.3 1.5E-12 5E-17 115.2 7.5 108 352-474 10-117 (170)
147 2r9u_A Variable lymphocyte rec 99.3 2.7E-12 9.3E-17 113.9 7.5 107 353-474 14-120 (174)
148 2ifg_A High affinity nerve gro 99.3 4.7E-12 1.6E-16 126.3 9.5 115 379-508 12-128 (347)
149 4gt6_A Cell surface protein; l 99.3 4.1E-11 1.4E-15 121.6 14.5 303 157-495 56-369 (394)
150 4h09_A Hypothetical leucine ri 99.1 4.6E-10 1.6E-14 113.3 13.2 304 133-483 39-356 (379)
151 3e4g_A ATP synthase subunit S, 99.1 1.3E-10 4.4E-15 101.0 6.7 83 91-174 62-149 (176)
152 2ifg_A High affinity nerve gro 99.1 1.5E-10 5.3E-15 115.3 7.6 104 330-449 12-117 (347)
153 4h09_A Hypothetical leucine ri 99.1 6.8E-10 2.3E-14 112.0 12.5 318 85-461 41-358 (379)
154 2ra8_A Uncharacterized protein 99.0 6.7E-10 2.3E-14 110.1 11.0 75 433-508 250-331 (362)
155 2ra8_A Uncharacterized protein 99.0 6.4E-09 2.2E-13 103.0 16.7 86 299-386 250-341 (362)
156 3e4g_A ATP synthase subunit S, 99.0 6.1E-10 2.1E-14 96.8 6.0 104 411-514 61-172 (176)
157 1io0_A Tropomodulin; LRR prote 98.9 9.1E-09 3.1E-13 92.0 13.0 122 81-203 27-166 (185)
158 1io0_A Tropomodulin; LRR prote 98.9 9.8E-09 3.3E-13 91.8 10.6 115 108-222 29-161 (185)
159 3rw6_A Nuclear RNA export fact 98.3 1E-07 3.5E-12 89.4 0.2 79 373-465 168-257 (267)
160 3rw6_A Nuclear RNA export fact 98.2 9.6E-07 3.3E-11 82.8 6.0 80 408-489 167-257 (267)
161 1pgv_A TMD-1, tropomodulin TMD 98.2 1.9E-05 6.4E-10 69.9 13.2 119 81-200 32-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 98.2 5.9E-06 2E-10 73.1 9.8 110 278-387 40-169 (197)
163 3rfe_A Platelet glycoprotein I 97.8 1.5E-05 5.1E-10 66.0 4.2 69 438-509 11-81 (130)
164 3rfe_A Platelet glycoprotein I 96.4 0.0038 1.3E-07 51.3 5.6 56 415-472 12-68 (130)
165 2lz0_A Uncharacterized protein 76.7 2 6.8E-05 32.9 3.4 46 422-468 7-52 (100)
166 2lz0_A Uncharacterized protein 69.8 7.2 0.00025 29.7 5.1 38 406-444 15-52 (100)
167 4h62_V Mediator of RNA polymer 53.6 11 0.00038 20.2 2.3 17 1-17 9-25 (31)
No 1
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3e-50 Score=436.34 Aligned_cols=470 Identities=19% Similarity=0.172 Sum_probs=319.4
Q ss_pred HHhHhhhhcccccCchHHHHHHHHHHHHhccc----ChhhHhhhcCCccEEEecCCCCCChhHHHHHhcCCCccEEEcCC
Q 007693 24 VQKWRRQRRSLERLPAHLADSLLRHLIRRRLI----FPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVAD 99 (593)
Q Consensus 24 ~~~~~~~~~~l~~lp~~l~~~~l~~l~~~~~~----~p~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~ 99 (593)
...++|++.++..+|..++.. ++.|...+.. .|..+.. .++|++|+|++|. +....+..|+++++|++|+|++
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~~-l~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~ 90 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPNS-TECLEFSFNVLPTIQNTTFSR-LINLTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTA 90 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCTT-CCEEECTTCCCSEECTTTSTT-CTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTT
T ss_pred CceEECCCCCcccCcCCCCCc-CcEEEccCCccCcCChhHhcc-CccceEEECCCCc-cceeChhhccCccccCeeeCCC
Confidence 356788999999999877763 2222111111 1223332 3667777777776 5555566677777777777777
Q ss_pred CCccCchHHHhhhCCCCCcEEecCCCCCCChhhHHhhcCCCCCcEEEccCCCCChhHHHHhcCCCCCCEEEcCCCCCChh
Q 007693 100 CRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDL 179 (593)
Q Consensus 100 ~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 179 (593)
|. +....+.+++++++|++|++++| .++...+..++++++|++|++++|.+++.....+..+++|++|++++|.+.+.
T Consensus 91 n~-l~~~~~~~~~~l~~L~~L~L~~n-~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 168 (606)
T 3t6q_A 91 NP-LIFMAETALSGPKALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL 168 (606)
T ss_dssp CC-CSEECTTTTSSCTTCCEEECTTS-CCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEE
T ss_pred Cc-ccccChhhhcccccccEeecccc-CcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccccc
Confidence 76 66655666777777777777777 56665566677777788888888777765434455577888888888888777
Q ss_pred hHHHhhcCCCCC--EEEccCCccCccchHhhcCC----------------------------------------------
Q 007693 180 VLRSLQVLTKLE--YLDLWGSQVSNRGAAVLKMF---------------------------------------------- 211 (593)
Q Consensus 180 ~~~~l~~l~~L~--~L~L~~n~l~~~~~~~l~~l---------------------------------------------- 211 (593)
.+..++.+++|+ .|++++|.+.+..+..+...
T Consensus 169 ~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~ 248 (606)
T 3t6q_A 169 SKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVF 248 (606)
T ss_dssp CHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGG
T ss_pred ChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHh
Confidence 777777777777 67777776665444332210
Q ss_pred -----CCCCeeeccccCCcCC-----CCCCCCcEEEcCCCcccchhcccCCCCCcceEeccCccccchhhH---------
Q 007693 212 -----PRLSFLNLAWTGVTKL-----PNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREA--------- 272 (593)
Q Consensus 212 -----~~L~~L~l~~n~l~~l-----~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~~~~~~~~--------- 272 (593)
.+|+.|++++|.++.+ ..+++|++|++++|.++.+|..+..+++|++|++++|.+...++.
T Consensus 249 ~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 328 (606)
T 3t6q_A 249 EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLT 328 (606)
T ss_dssp GGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCS
T ss_pred chhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCC
Confidence 0334444444444432 245566666666666666666666666666666666666554331
Q ss_pred ---------------HhhhcCCCccEEeccCCCcchh----hhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEc
Q 007693 273 ---------------FLYIETSLLSFLDVSNSSLSRF----CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNL 333 (593)
Q Consensus 273 ---------------~~~~~~~~L~~L~ls~n~l~~~----~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l 333 (593)
..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+ ++|++|++
T Consensus 329 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l 407 (606)
T 3t6q_A 329 HLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC-PQLELLDL 407 (606)
T ss_dssp EEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTC-TTCSEEEC
T ss_pred EEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCC-ccCCeEEC
Confidence 1123444555555555554443 134555666666666666555444444444 66777777
Q ss_pred CCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCcc
Q 007693 334 SNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHL 413 (593)
Q Consensus 334 ~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L 413 (593)
++|.+++..+...++.+++|++|++++|.+++..+..+..+++|++|++++|.+.+.... ....+..+++|
T Consensus 408 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------~~~~~~~l~~L 478 (606)
T 3t6q_A 408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ---------KTNSLQTLGRL 478 (606)
T ss_dssp TTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEEC---------SSCGGGGCTTC
T ss_pred CCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccc---------cchhhccCCCc
Confidence 776666554433335567777777777777766666677777777777777777652211 11258889999
Q ss_pred CEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcccccCccCCCCCceEecCCC
Q 007693 414 ERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGG 493 (593)
Q Consensus 414 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n 493 (593)
++|++++|.+++..+..|..+++|++|++++|++++..|..+.++++| .|++++|++++..+..+..+++|+.|++++|
T Consensus 479 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 557 (606)
T 3t6q_A 479 EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQN 557 (606)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTC
T ss_pred cEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCC
Confidence 999999999999888899999999999999999999999999999999 9999999999998888888999999999999
Q ss_pred ccCCHHHHHHHHhhCC
Q 007693 494 WLLTEDAILQFCKMHP 509 (593)
Q Consensus 494 ~~~~~~~~~~~~~~~~ 509 (593)
++.|+|...++..|+.
T Consensus 558 ~~~c~c~~~~~~~w~~ 573 (606)
T 3t6q_A 558 PLDCTCSNIYFLEWYK 573 (606)
T ss_dssp CEECSGGGHHHHHHHH
T ss_pred CccccCCcHHHHHHHH
Confidence 9999998877766653
No 2
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=7.5e-49 Score=425.38 Aligned_cols=445 Identities=17% Similarity=0.161 Sum_probs=272.7
Q ss_pred HhHhhhhcccccCchHHHHHHHHHHHHhcccChhhHhhhcCCccEEEecCCCCCChhHHHHHhcCCCccEEEcCCCCccC
Q 007693 25 QKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVT 104 (593)
Q Consensus 25 ~~~~~~~~~l~~lp~~l~~~~l~~l~~~~~~~p~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~ 104 (593)
..++|++.+++.+|..++. ++++|+|++|. +....+..|+++++|++|+|++|. ++
T Consensus 14 ~~~~c~~~~l~~ip~~~~~----------------------~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~ 69 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDIPS----------------------STKNIDLSFNP-LKILKSYSFSNFSELQWLDLSRCE-IE 69 (606)
T ss_dssp TEEECTTSCCSSCCTTSCT----------------------TCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCC-CC
T ss_pred CceEccCCCcccCCCCCCC----------------------CcCEEECCCCC-cCEeChhhccCCccCcEEeCCCCc-cc
Confidence 5688999999999986654 25555555554 333333344555555555555544 44
Q ss_pred chHHHhhhCCCCCcEEecCCCCCCChhhHHhhcCCCCCcEEEccCCCCChhHHHHhcCCCCCCEEEcCCCCCCh-hhHHH
Q 007693 105 SSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTD-LVLRS 183 (593)
Q Consensus 105 ~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~ 183 (593)
...+.+|.++++|++|++++| .++...+..|+++++|++|++++|.+++..+..++++++|++|++++|.+.+ ..|..
T Consensus 70 ~i~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~ 148 (606)
T 3vq2_A 70 TIEDKAWHGLHHLSNLILTGN-PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY 148 (606)
T ss_dssp EECTTTTTTCTTCCEEECTTC-CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG
T ss_pred ccCHHHhhchhhcCEeECCCC-cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh
Confidence 444444555555555555555 3444444445555555555555555544443344455555555555555443 22444
Q ss_pred hhcCCCCCEEEccCCccCccchHhhcCCC---------------------------CCCeeeccccCCcC----------
Q 007693 184 LQVLTKLEYLDLWGSQVSNRGAAVLKMFP---------------------------RLSFLNLAWTGVTK---------- 226 (593)
Q Consensus 184 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~---------------------------~L~~L~l~~n~l~~---------- 226 (593)
++++++|++|++++|.+++..+..+..++ +|+.|++++|.+..
T Consensus 149 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l 228 (606)
T 3vq2_A 149 FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNL 228 (606)
T ss_dssp GGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTT
T ss_pred HhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccc
Confidence 55555555555555544443333222211 33444444332210
Q ss_pred ----------------------------------------------------CCCCCCCcEEEcCCCcccchhcccCCCC
Q 007693 227 ----------------------------------------------------LPNISSLECLNLSNCTIDSILEGNENKA 254 (593)
Q Consensus 227 ----------------------------------------------------l~~l~~L~~L~l~~n~l~~l~~~~~~~~ 254 (593)
+..+++|+.|++++|.+..++ .+..++
T Consensus 229 ~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~ 307 (606)
T 3vq2_A 229 AGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHF 307 (606)
T ss_dssp TTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTC
T ss_pred cccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh-hccccc
Confidence 011233333444444333333 333444
Q ss_pred CcceEeccCccccchhhH------------------HhhhcCCCccEEeccCCCcchh----hhcccCCCccEEEccCCC
Q 007693 255 PLAKISLAGTTFINEREA------------------FLYIETSLLSFLDVSNSSLSRF----CFLTQMKALEHLDLSSSM 312 (593)
Q Consensus 255 ~L~~L~l~~n~~~~~~~~------------------~~~~~~~~L~~L~ls~n~l~~~----~~l~~~~~L~~L~L~~n~ 312 (593)
+|++|++++|.+..++.. ..+..+++|++|++++|.+++. ..+..+++|++|++++|.
T Consensus 308 ~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 387 (606)
T 3vq2_A 308 KWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG 387 (606)
T ss_dssp CCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS
T ss_pred cCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc
Confidence 444444444444333310 0223556666666666666544 345566677777777766
Q ss_pred CChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCcc-c
Q 007693 313 IGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGF-I 391 (593)
Q Consensus 313 l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~-~ 391 (593)
+++.. ..+..+ ++|++|++++|.+++..+...++.+++|++|++++|.+++..+..+..+++|++|++++|.+.+. .
T Consensus 388 l~~~~-~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 465 (606)
T 3vq2_A 388 AIIMS-ANFMGL-EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL 465 (606)
T ss_dssp EEEEC-CCCTTC-TTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred cccch-hhccCC-CCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcch
Confidence 65432 333333 67777777777776665522235677888888888887777677777888888888888887763 4
Q ss_pred cccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCccc
Q 007693 392 QQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVL 471 (593)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 471 (593)
+. .+..+++|++|++++|.+++..+..+..+++|++|++++|++++..|..+..+++|+.|++++|++
T Consensus 466 ~~------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l 533 (606)
T 3vq2_A 466 SN------------VFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533 (606)
T ss_dssp CS------------CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCC
T ss_pred HH------------hhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcC
Confidence 54 588889999999999999988888889999999999999999998888899999999999999999
Q ss_pred CcccccCccCCC-CCceEecCCCccCCHHHHHHHHhhCCc
Q 007693 472 TNSGLGSFKPPR-SLKLLDLHGGWLLTEDAILQFCKMHPR 510 (593)
Q Consensus 472 ~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~~~ 510 (593)
+.++ ..+..++ +|+.|++++|++.|+|...++.+|+..
T Consensus 534 ~~~p-~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~~ 572 (606)
T 3vq2_A 534 ETSK-GILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKE 572 (606)
T ss_dssp CCEE-SCGGGSCTTCCEEECCSCCCCCSSTTHHHHTTTTT
T ss_pred cccC-HhHhhhcccCcEEEccCCCcccCCccHHHHHHHHc
Confidence 8654 4477776 699999999999999999998888753
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6.2e-48 Score=427.55 Aligned_cols=423 Identities=19% Similarity=0.158 Sum_probs=301.4
Q ss_pred CCccEEEecCCCCCChhHHHHHhcCCCccEEEcCCCCccCchHHHhhhCCCCCcEEecCCCCCCChhhHHhhcC-CCCCc
Q 007693 65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLS-ISTLE 143 (593)
Q Consensus 65 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~-~~~L~ 143 (593)
++|++|++++|. +.+..+..+..+++|++|++++|. +....+. ..+++|++|++++| .++...+..+.. +++|+
T Consensus 223 ~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~--~~l~~L~~L~L~~n-~l~~~ip~~~~~~~~~L~ 297 (768)
T 3rgz_A 223 SALQHLDISGNK-LSGDFSRAISTCTELKLLNISSNQ-FVGPIPP--LPLKSLQYLSLAEN-KFTGEIPDFLSGACDTLT 297 (768)
T ss_dssp CSCCEEECCSSC-CCSCHHHHTTTCSSCCEEECCSSC-CEESCCC--CCCTTCCEEECCSS-EEEESCCCCSCTTCTTCS
T ss_pred CCCCEEECcCCc-CCCcccHHHhcCCCCCEEECCCCc-ccCccCc--cccCCCCEEECcCC-ccCCccCHHHHhhcCcCC
Confidence 445555555554 444444555555555555555554 2221111 14455555555555 333333444444 36677
Q ss_pred EEEccCCCCChhHHHHhcCCCCCCEEEcCCCCCChhhHHH-hhcCCCCCEEEccCCccCccchHhhcCCC-CCCeeeccc
Q 007693 144 KLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRS-LQVLTKLEYLDLWGSQVSNRGAAVLKMFP-RLSFLNLAW 221 (593)
Q Consensus 144 ~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~ 221 (593)
+|++++|.+++..+..|+.+++|++|++++|.+.+..|.. +..+++|++|++++|.+++..|..+..++ +|++|++++
T Consensus 298 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~ 377 (768)
T 3rgz_A 298 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS 377 (768)
T ss_dssp EEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCS
T ss_pred EEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccC
Confidence 7777777666655666667777777777777766444433 66777777777777777666666666665 677777777
Q ss_pred cCCcC-----CCC--CCCCcEEEcCCCccc-chhcccCCCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcch
Q 007693 222 TGVTK-----LPN--ISSLECLNLSNCTID-SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSR 293 (593)
Q Consensus 222 n~l~~-----l~~--l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~ 293 (593)
|.+++ +.. +++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+. .+..+++|+.|++++|.+.+
T Consensus 378 N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~L~~n~l~~ 456 (768)
T 3rgz_A 378 NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS-SLGSLSKLRDLKLWLNMLEG 456 (768)
T ss_dssp SEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCG-GGGGCTTCCEEECCSSCCCS
T ss_pred CCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccH-HHhcCCCCCEEECCCCcccC
Confidence 76553 112 567888888888887 5677777888888888888888754332 24578888888888888875
Q ss_pred h--hhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHh
Q 007693 294 F--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYM 371 (593)
Q Consensus 294 ~--~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l 371 (593)
. ..+..+++|++|++++|.+++..+..+..+ ++|++|++++|++++..+..+ +.+++|++|++++|.+++..|..+
T Consensus 457 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~l 534 (768)
T 3rgz_A 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNC-TNLNWISLSNNRLTGEIPKWI-GRLENLAILKLSNNSFSGNIPAEL 534 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC-TTCCEEECCSSCCCSCCCGGG-GGCTTCCEEECCSSCCEEECCGGG
T ss_pred cCCHHHcCCCCceEEEecCCcccCcCCHHHhcC-CCCCEEEccCCccCCcCChHH-hcCCCCCEEECCCCcccCcCCHHH
Confidence 5 567788889999999988887777777666 889999999998887777665 568899999999999888888888
Q ss_pred hcCCCCCEEEeeCCccCccccccccchhh----------------------------------------hh---------
Q 007693 372 SMMPSLKFIDISNTDIKGFIQQVGAETDL----------------------------------------VL--------- 402 (593)
Q Consensus 372 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~----------------------------------------~~--------- 402 (593)
..+++|+.|++++|++.+.+|........ ..
T Consensus 535 ~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 614 (768)
T 3rgz_A 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614 (768)
T ss_dssp GGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSC
T ss_pred cCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccc
Confidence 88999999999999888776653221000 00
Q ss_pred ---------hHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCc
Q 007693 403 ---------SLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 473 (593)
Q Consensus 403 ---------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 473 (593)
....+..+++|+.|+|++|++++.+|..++.+++|+.|+|++|++++.+|..++++++|+.|||++|++++
T Consensus 615 l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g 694 (768)
T 3rgz_A 615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 694 (768)
T ss_dssp TTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred cccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccC
Confidence 00124556788899999999998888889999999999999999998888889999999999999999998
Q ss_pred ccccCccCCCCCceEecCCCcc
Q 007693 474 SGLGSFKPPRSLKLLDLHGGWL 495 (593)
Q Consensus 474 ~~~~~~~~~~~L~~L~l~~n~~ 495 (593)
.+|..+..+++|++|++++|++
T Consensus 695 ~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 695 RIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp CCCGGGGGCCCCSEEECCSSEE
T ss_pred cCChHHhCCCCCCEEECcCCcc
Confidence 8888888889999999999987
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.7e-48 Score=429.32 Aligned_cols=438 Identities=22% Similarity=0.247 Sum_probs=323.9
Q ss_pred CCccEEEecCCCCCChhHHHHHhcCCCccEEEcCCCCccCchHHHhhhCCCCCcEEecCCCCCCChhhHHhhcCCCCCcE
Q 007693 65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEK 144 (593)
Q Consensus 65 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~~~~L~~ 144 (593)
++|++|+|++|. +....+. ++.+++|++|++++|. ++...+..+..+++|++|++++| .++...+.. .+++|++
T Consensus 200 ~~L~~L~Ls~n~-l~~~~~~-l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~--~l~~L~~ 273 (768)
T 3rgz_A 200 VNLEFLDVSSNN-FSTGIPF-LGDCSALQHLDISGNK-LSGDFSRAISTCTELKLLNISSN-QFVGPIPPL--PLKSLQY 273 (768)
T ss_dssp TTCCEEECCSSC-CCSCCCB-CTTCCSCCEEECCSSC-CCSCHHHHTTTCSSCCEEECCSS-CCEESCCCC--CCTTCCE
T ss_pred CcCCEEECcCCc-CCCCCcc-cccCCCCCEEECcCCc-CCCcccHHHhcCCCCCEEECCCC-cccCccCcc--ccCCCCE
Confidence 455555555554 3332222 5555666666666655 55445555666666666666666 333222211 5566666
Q ss_pred EEccCCCCChhHHHHhcC-CCCCCEEEcCCCCCChhhHHHhhcCCCCCEEEccCCccCccchH-hhcCCCCCCeeecccc
Q 007693 145 LWLSETGLTADGIALLSS-LQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAA-VLKMFPRLSFLNLAWT 222 (593)
Q Consensus 145 L~L~~~~~~~~~~~~l~~-l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n 222 (593)
|++++|.+++..+..+.. +++|++|++++|.+.+..|..++.+++|++|++++|.+++..+. .+..+++|++|++++|
T Consensus 274 L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n 353 (768)
T 3rgz_A 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353 (768)
T ss_dssp EECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSS
T ss_pred EECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCC
Confidence 666666665444444444 37777777777777777777777777888888887777755554 3777778888888877
Q ss_pred CCc-CCC----CCC-CCcEEEcCCCccc-chhcccCC--CCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcch
Q 007693 223 GVT-KLP----NIS-SLECLNLSNCTID-SILEGNEN--KAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSR 293 (593)
Q Consensus 223 ~l~-~l~----~l~-~L~~L~l~~n~l~-~l~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~ 293 (593)
.++ .++ .++ +|++|++++|.+. .++..+.. +++|++|++++|.+.+..+. .+.++++|++|++++|.+++
T Consensus 354 ~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~ 432 (768)
T 3rgz_A 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP-TLSNCSELVSLHLSFNYLSG 432 (768)
T ss_dssp EEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCG-GGGGCTTCCEEECCSSEEES
T ss_pred ccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCH-HHhcCCCCCEEECcCCcccC
Confidence 776 333 334 7888888888777 35555554 77889999999888753332 24588999999999999886
Q ss_pred h--hhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHh
Q 007693 294 F--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYM 371 (593)
Q Consensus 294 ~--~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l 371 (593)
. ..+..+++|++|++++|.+++..+..+... ++|++|++++|.+++..+..+ +.+++|++|++++|++++..|..+
T Consensus 433 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~l-~~l~~L~~L~L~~N~l~~~~p~~~ 510 (768)
T 3rgz_A 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV-KTLETLILDFNDLTGEIPSGL-SNCTNLNWISLSNNRLTGEIPKWI 510 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC-TTCCEEECCSSCCCSCCCGGG-GGCTTCCEEECCSSCCCSCCCGGG
T ss_pred cccHHHhcCCCCCEEECCCCcccCcCCHHHcCC-CCceEEEecCCcccCcCCHHH-hcCCCCCEEEccCCccCCcCChHH
Confidence 5 678889999999999999988777777766 899999999999998777665 679999999999999998888889
Q ss_pred hcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCcccc---------------------
Q 007693 372 SMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFP--------------------- 430 (593)
Q Consensus 372 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------------------- 430 (593)
+.+++|++|++++|++.+.+|. .+..+++|+.|++++|.+++.+|..
T Consensus 511 ~~l~~L~~L~L~~N~l~~~~p~------------~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~ 578 (768)
T 3rgz_A 511 GRLENLAILKLSNNSFSGNIPA------------ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI 578 (768)
T ss_dssp GGCTTCCEEECCSSCCEEECCG------------GGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEE
T ss_pred hcCCCCCEEECCCCcccCcCCH------------HHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccc
Confidence 9999999999999999988887 6899999999999999887655543
Q ss_pred -------------------------------------------------ccCCCCCcEEecCCCCCCchhHHhhhcCCCC
Q 007693 431 -------------------------------------------------LSTFKELIHLSLRNASLTDVSLHQLSSLSKL 461 (593)
Q Consensus 431 -------------------------------------------------~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 461 (593)
+..+++|+.|+|++|++++.+|..++.+++|
T Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L 658 (768)
T 3rgz_A 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL 658 (768)
T ss_dssp ECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTC
T ss_pred ccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccC
Confidence 3345789999999999999999999999999
Q ss_pred cEEEecCcccCcccccCccCCCCCceEecCCCccCCHHHHHHHHh--hCCcEEEEeeeccccCCCCCCCCCCCCC
Q 007693 462 TNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCK--MHPRIEVWHELSVICPSDQIGSNGPSPS 534 (593)
Q Consensus 462 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~p~ 534 (593)
+.|+|++|++++.+|..+..+++|+.|||++|++ ++..+..+.. .+..++ ...|+++|.+|.
T Consensus 659 ~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l-~g~ip~~l~~l~~L~~L~----------ls~N~l~g~iP~ 722 (768)
T 3rgz_A 659 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL-DGRIPQAMSALTMLTEID----------LSNNNLSGPIPE 722 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC-EECCCGGGGGCCCCSEEE----------CCSSEEEEECCS
T ss_pred CEEeCcCCccCCCCChHHhCCCCCCEEECCCCcc-cCcCChHHhCCCCCCEEE----------CcCCcccccCCC
Confidence 9999999999999999999999999999999998 3333322221 233333 446777777776
No 5
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.4e-48 Score=414.74 Aligned_cols=436 Identities=18% Similarity=0.206 Sum_probs=334.5
Q ss_pred HHhHhhhhcccccCchHHHHHHHHHHHHhcccChhhHhhhcCCccEEEecCCCCCChhHHHHHhcCCCccEEEcCCCCcc
Q 007693 24 VQKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRV 103 (593)
Q Consensus 24 ~~~~~~~~~~l~~lp~~l~~~~l~~l~~~~~~~p~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i 103 (593)
...++|++.++..+|..++. ++++|+|++|. +....+..|.++++|++|+|++|+ +
T Consensus 9 ~~~~~c~~~~l~~ip~~l~~----------------------~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-i 64 (570)
T 2z63_A 9 NITYQCMELNFYKIPDNLPF----------------------STKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCE-I 64 (570)
T ss_dssp TTEEECCSSCCSSCCSSSCS----------------------SCCEEECCSCC-CCEECTTTTTTCSSCCEEECTTCC-C
T ss_pred CcEEEeCCCCccccCCCccc----------------------cccEEEccCCc-cCccChhHhhCCCCceEEECCCCc-C
Confidence 35678888899999975543 47777777775 444444456667777777777765 6
Q ss_pred CchHHHhhhCCCCCcEEecCCCCCCChhhHHhhcCCCCCcEEEccCCCCChhHHHHhcCCCCCCEEEcCCCCCChh-hHH
Q 007693 104 TSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDL-VLR 182 (593)
Q Consensus 104 ~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~ 182 (593)
+...+.++.++++|++|++++| .++...+..|.++++|++|++++|.+++.....++.+++|++|++++|.+.+. .|.
T Consensus 65 ~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~ 143 (570)
T 2z63_A 65 QTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143 (570)
T ss_dssp CEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCG
T ss_pred CccCcccccCchhCCEEeCcCC-cCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChh
Confidence 6555556667777777777777 45555556666777777777777766665544566677777777777766652 356
Q ss_pred HhhcCCCCCEEEccCCccCccchHhhcCCCCC----CeeeccccCCcC--------------------------------
Q 007693 183 SLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRL----SFLNLAWTGVTK-------------------------------- 226 (593)
Q Consensus 183 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L----~~L~l~~n~l~~-------------------------------- 226 (593)
.++++++|++|++++|.+++..+..+..+++| ..+++++|.++.
T Consensus 144 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 223 (570)
T 2z63_A 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQG 223 (570)
T ss_dssp GGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHT
T ss_pred hhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcC
Confidence 66677777777777776666555555554444 455555444322
Q ss_pred ------------------------------------------------------CCCCCCCcEEEcCCCcccchhcccCC
Q 007693 227 ------------------------------------------------------LPNISSLECLNLSNCTIDSILEGNEN 252 (593)
Q Consensus 227 ------------------------------------------------------l~~l~~L~~L~l~~n~l~~l~~~~~~ 252 (593)
+..+++|++|++++|.+..+|..+..
T Consensus 224 l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~ 303 (570)
T 2z63_A 224 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN 303 (570)
T ss_dssp TTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSC
T ss_pred ccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhcc
Confidence 12356788888888888888877777
Q ss_pred CCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcchhhhcccCCCccEEEccCCCCChhH--HHHHHhccCCCcE
Q 007693 253 KAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDS--VEMVACVGANLRN 330 (593)
Q Consensus 253 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~L~~n~l~~~~--~~~~~~~~~~L~~ 330 (593)
+ +|++|++++|.+..++. ..+++|+.|++++|.+........+++|++|++++|.+++.. +..+..+ ++|++
T Consensus 304 ~-~L~~L~l~~n~~~~l~~----~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-~~L~~ 377 (570)
T 2z63_A 304 F-GWQHLELVNCKFGQFPT----LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT-TSLKY 377 (570)
T ss_dssp C-CCSEEEEESCBCSSCCB----CBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTC-SCCCE
T ss_pred C-CccEEeeccCcccccCc----ccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcccccccccccc-CccCE
Confidence 7 88888888888876655 267889999999888776644478899999999999988654 4556666 99999
Q ss_pred EEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHH-HHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhcc
Q 007693 331 LNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAI-SYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQN 409 (593)
Q Consensus 331 L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~ 409 (593)
|++++|.+++.... +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+. .+..
T Consensus 378 L~l~~n~l~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------~~~~ 443 (570)
T 2z63_A 378 LDLSFNGVITMSSN--FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG------------IFNG 443 (570)
T ss_dssp EECCSCSEEEEEEE--EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTT------------TTTT
T ss_pred EECCCCcccccccc--ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchh------------hhhc
Confidence 99999998887655 3679999999999999877654 4577899999999999999888777 6899
Q ss_pred CCccCEEecCCCCcC-CCccccccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcccccCccCCCCCceE
Q 007693 410 LNHLERLNLEQTQVS-DATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLL 488 (593)
Q Consensus 410 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 488 (593)
+++|++|++++|.++ +.+|..+..+++|++|++++|++++..|..|..+++|+.|++++|++++.++..+..+++|+.|
T Consensus 444 l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 523 (570)
T 2z63_A 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKI 523 (570)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEE
Confidence 999999999999998 4678889999999999999999999889999999999999999999999988889999999999
Q ss_pred ecCCCccCCHHHHHHH
Q 007693 489 DLHGGWLLTEDAILQF 504 (593)
Q Consensus 489 ~l~~n~~~~~~~~~~~ 504 (593)
++++|++.|++...++
T Consensus 524 ~l~~N~~~~~~~~~~~ 539 (570)
T 2z63_A 524 WLHTNPWDCSCPRIDY 539 (570)
T ss_dssp ECCSSCBCCCTTTTHH
T ss_pred EecCCcccCCCcchHH
Confidence 9999999888764443
No 6
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.8e-44 Score=386.41 Aligned_cols=434 Identities=20% Similarity=0.220 Sum_probs=274.3
Q ss_pred HhhhhcccccCchHHHHHHHHHHHHhcccChhhHhhhcCCccEEEecCCCCCChhHHHHHhcCCCccEEEcCCCCccCch
Q 007693 27 WRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSS 106 (593)
Q Consensus 27 ~~~~~~~l~~lp~~l~~~~l~~l~~~~~~~p~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~ 106 (593)
++++...++.+|..++ +++++|+|++|. +....+..|.++++|++|+|++|+ ++..
T Consensus 10 c~~~~~~l~~ip~~~~----------------------~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~ 65 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLT----------------------AAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSR-INTI 65 (549)
T ss_dssp EECTTSCCSSCCSCCC----------------------TTCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTSC-CCEE
T ss_pred EECCCCccccccccCC----------------------CCccEEECcCCc-cCccChhhhhcCCcccEEECCCCC-cCcc
Confidence 6677788899987544 347888888876 555555567777888888888776 6666
Q ss_pred HHHhhhCCCCCcEEecCCCCCCChhhHHhhcCCCCCcEEEccCCCCChh-HHHHhcCCCCCCEEEcCCCC-CChhhHHHh
Q 007693 107 ALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTAD-GIALLSSLQNLSVLDLGGLP-VTDLVLRSL 184 (593)
Q Consensus 107 ~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~-~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l 184 (593)
.+.++.++++|++|++++| .++...+..++++++|++|++++|.+++. .+..++++++|++|++++|. +....+..+
T Consensus 66 ~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~ 144 (549)
T 2z81_A 66 EGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144 (549)
T ss_dssp CTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT
T ss_pred ChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhh
Confidence 6667777888888888887 56666666677788888888888877653 23456777788888888777 444444567
Q ss_pred hcCCCCCEEEccCCccCccchHhhcCCCCCCeeeccccCCcCCC-----CCCCCcEEEcCCCcccchh---ccc-CCCCC
Q 007693 185 QVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSIL---EGN-ENKAP 255 (593)
Q Consensus 185 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~-----~l~~L~~L~l~~n~l~~l~---~~~-~~~~~ 255 (593)
.++++|++|++++|.+++..+..+..+++|++|++++|.+..++ .+++|++|++++|.+.+++ ..+ ..+++
T Consensus 145 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 224 (549)
T 2z81_A 145 AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSP 224 (549)
T ss_dssp TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCC
T ss_pred hcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhc
Confidence 77777888888877777777777777777777776666655433 3566666666666665431 111 13455
Q ss_pred cceEeccCccccchhhHH---hhhcC------------------------------------------------------
Q 007693 256 LAKISLAGTTFINEREAF---LYIET------------------------------------------------------ 278 (593)
Q Consensus 256 L~~L~l~~n~~~~~~~~~---~~~~~------------------------------------------------------ 278 (593)
|+.|++++|.+.+..... ....+
T Consensus 225 L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~ 304 (549)
T 2z81_A 225 MKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST 304 (549)
T ss_dssp CCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCH
T ss_pred ccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchh
Confidence 555555555444311100 01122
Q ss_pred -----CCccEEeccCCCcchhh--hcccCCCccEEEccCCCCChhHHHH---HHhccCCCcEEEcCCCCCCCchH-HHHH
Q 007693 279 -----SLLSFLDVSNSSLSRFC--FLTQMKALEHLDLSSSMIGDDSVEM---VACVGANLRNLNLSNTRFSSAGV-GILA 347 (593)
Q Consensus 279 -----~~L~~L~ls~n~l~~~~--~l~~~~~L~~L~L~~n~l~~~~~~~---~~~~~~~L~~L~l~~n~l~~~~~-~~~~ 347 (593)
++|+.|++++|.+..++ .+..+++|++|++++|.+++..+.. +..+ ++|++|++++|.+++... ...+
T Consensus 305 ~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~ 383 (549)
T 2z81_A 305 VYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW-PSLQTLVLSQNHLRSMQKTGEIL 383 (549)
T ss_dssp HHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSS-TTCCEEECTTSCCCCHHHHHHHG
T ss_pred hhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhcc-ccCcEEEccCCcccccccchhhh
Confidence 33444444444444331 1134555555555555555443322 1112 455555555555554432 1222
Q ss_pred cCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCc
Q 007693 348 GHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT 427 (593)
Q Consensus 348 ~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 427 (593)
+.+++|++|++++|+++. .|..+..+++|++|++++|.+.+.... + .++|++|++++|++++.
T Consensus 384 ~~l~~L~~L~Ls~N~l~~-lp~~~~~~~~L~~L~Ls~N~l~~l~~~-------------~--~~~L~~L~Ls~N~l~~~- 446 (549)
T 2z81_A 384 LTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGIRVVKTC-------------I--PQTLEVLDVSNNNLDSF- 446 (549)
T ss_dssp GGCTTCCEEECTTCCCCC-CCSCCCCCTTCCEEECTTSCCSCCCTT-------------S--CTTCSEEECCSSCCSCC-
T ss_pred hcCCCCCEEECCCCCCcc-CChhhcccccccEEECCCCCcccccch-------------h--cCCceEEECCCCChhhh-
Confidence 445555555555555553 223344455555555555555433221 1 14677777777776653
Q ss_pred cccccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcccccCccCCCCCceEecCCCccCCHHHH-HHHHh
Q 007693 428 LFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAI-LQFCK 506 (593)
Q Consensus 428 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~ 506 (593)
+..+++|++|++++|+++.+. . ...+++|+.|++++|++++.++..+..+++|+.|++++|++.|++.. .++..
T Consensus 447 ---~~~l~~L~~L~Ls~N~l~~ip-~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~l~~ 521 (549)
T 2z81_A 447 ---SLFLPRLQELYISRNKLKTLP-D-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR 521 (549)
T ss_dssp ---CCCCTTCCEEECCSSCCSSCC-C-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHHHHHH
T ss_pred ---cccCChhcEEECCCCccCcCC-C-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccHHHHHH
Confidence 247899999999999999654 3 56799999999999999999888899999999999999999999884 44444
Q ss_pred hC
Q 007693 507 MH 508 (593)
Q Consensus 507 ~~ 508 (593)
|.
T Consensus 522 ~l 523 (549)
T 2z81_A 522 WL 523 (549)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6.7e-45 Score=399.70 Aligned_cols=415 Identities=20% Similarity=0.264 Sum_probs=243.0
Q ss_pred cCCccEEEecCCCCCChhHHHHHhcCCCccEEEcCCCCccCchHHHhhhCCCCCcEEecCCCCCCChhhHHhhcCCCCCc
Q 007693 64 KHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLE 143 (593)
Q Consensus 64 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~~~~L~ 143 (593)
.++|++|+|++|. +.......|+.+++|++|+|++|+ +....+.+++++++|++|++++| .++...+..++++++|+
T Consensus 72 l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~ 148 (680)
T 1ziw_A 72 LPMLKVLNLQHNE-LSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQ 148 (680)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCC
T ss_pred ccCcCEEECCCCc-cCccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCC-cccccCchhhcccccCC
Confidence 3567777777665 333333346666777777777665 55544455666677777777776 45554455556666666
Q ss_pred EEEccCCCCChhHHHHhc--CCCCCCEEEcCCCCCChhhH----------------------------------------
Q 007693 144 KLWLSETGLTADGIALLS--SLQNLSVLDLGGLPVTDLVL---------------------------------------- 181 (593)
Q Consensus 144 ~L~L~~~~~~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~---------------------------------------- 181 (593)
+|++++|.+++..+..++ .+++|++|++++|.+.+..+
T Consensus 149 ~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~ 228 (680)
T 1ziw_A 149 ELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLS 228 (680)
T ss_dssp EEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEE
T ss_pred EEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEE
Confidence 666666666655444433 33455555555554443322
Q ss_pred -----------HHhhcC--CCCCEEEccCCccCccchHhhcCCCCCCeeeccccCCcC-----CCCC-------------
Q 007693 182 -----------RSLQVL--TKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTK-----LPNI------------- 230 (593)
Q Consensus 182 -----------~~l~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-----l~~l------------- 230 (593)
..+..+ ++|++|++++|.+++..+..|..+++|++|++++|.+.. +..+
T Consensus 229 L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~ 308 (680)
T 1ziw_A 229 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 308 (680)
T ss_dssp CTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBC
T ss_pred ccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhh
Confidence 223333 237777777777777777777777777777777776543 2234
Q ss_pred --------------------CCCcEEEcCCCcccchhcc-cCCCCCcceEeccCccccc--hhhH-HhhhcCCCccEEec
Q 007693 231 --------------------SSLECLNLSNCTIDSILEG-NENKAPLAKISLAGTTFIN--EREA-FLYIETSLLSFLDV 286 (593)
Q Consensus 231 --------------------~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~l~~n~~~~--~~~~-~~~~~~~~L~~L~l 286 (593)
++|++|++++|.+.++++. +..+++|++|++++|.+.. ++.. +.....++|+.|++
T Consensus 309 ~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L 388 (680)
T 1ziw_A 309 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNL 388 (680)
T ss_dssp CC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEEC
T ss_pred hcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEEC
Confidence 4455555555555544332 2355555555555554221 1110 00011245666666
Q ss_pred cCCCcchh--hhcccCCCccEEEccCCCCChhHH-HHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCC
Q 007693 287 SNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSV-EMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQI 363 (593)
Q Consensus 287 s~n~l~~~--~~l~~~~~L~~L~L~~n~l~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i 363 (593)
++|.++++ ..+..+++|++|++++|.+++..+ ..+..+ ++|++|++++|.+++.....+ ..+++|+.|++++|.+
T Consensus 389 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~-~~~~~L~~L~l~~n~l 466 (680)
T 1ziw_A 389 TKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGL-ENIFEIYLSYNKYLQLTRNSF-ALVPSLQRLMLRRVAL 466 (680)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTC-TTCCEEECCSCSEEECCTTTT-TTCTTCCEEECTTSCC
T ss_pred CCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCc-ccccEEecCCCCcceeChhhh-hcCcccccchhccccc
Confidence 66666655 456777888888888888765333 334443 778888888887766555444 4566777777776665
Q ss_pred C--hHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCcc--------ccccC
Q 007693 364 D--DYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATL--------FPLST 433 (593)
Q Consensus 364 ~--~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~~~~ 433 (593)
. +..|..+..+++|+.|++++|++++.++. .+.++++|++|++++|.+++... ..+..
T Consensus 467 ~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~ 534 (680)
T 1ziw_A 467 KNVDSSPSPFQPLRNLTILDLSNNNIANINDD------------MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKG 534 (680)
T ss_dssp BCTTCSSCTTTTCTTCCEEECCSSCCCCCCTT------------TTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTT
T ss_pred cccccCCcccccCCCCCEEECCCCCCCcCChh------------hhccccccCEEeCCCCCccccchhhccCCcchhhcC
Confidence 4 23444566666777777777766665555 45666666666666666654321 12455
Q ss_pred CCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcccccCccCCCCCceEecCCCcc
Q 007693 434 FKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL 495 (593)
Q Consensus 434 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~ 495 (593)
+++|++|++++|+++.+.+..|.++++|+.|++++|+++++++..|..+++|+.|++++|++
T Consensus 535 l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l 596 (680)
T 1ziw_A 535 LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI 596 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred CCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcC
Confidence 66666666666666655545566666666666666666666555555666666666666665
No 8
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.2e-44 Score=397.64 Aligned_cols=465 Identities=18% Similarity=0.182 Sum_probs=298.5
Q ss_pred HhHhhhhcccccCchHHHHHHHHHHHHhccc---Chh-hHhhhcCCccEEEecCCCCCChhHHHHHhcCCCccEEEcCCC
Q 007693 25 QKWRRQRRSLERLPAHLADSLLRHLIRRRLI---FPS-LLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADC 100 (593)
Q Consensus 25 ~~~~~~~~~l~~lp~~l~~~~l~~l~~~~~~---~p~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 100 (593)
+.++|++..++.+|..++.. ++.|...+.. .|. .+.. .++|++|+|++|. +....+..++++++|++|+|++|
T Consensus 7 ~~~~cs~~~L~~ip~~~~~~-l~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLPTN-ITVLNLTHNQLRRLPAANFTR-YSQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp SEEECCSSCCSSCCSCSCTT-CSEEECCSSCCCCCCGGGGGG-GTTCSEEECCSSC-CCCCCTTHHHHCTTCCEEECCSS
T ss_pred CeeECCCCCccccccccCCC-CcEEECCCCCCCCcCHHHHhC-CCcCcEEECCCCc-cCccCHHHHhcccCcCEEECCCC
Confidence 56889999999999877632 2322211111 232 2332 4778889998886 55566677888888999999888
Q ss_pred CccCchHHHhhhCCCCCcEEecCCCCCCChhhHHhhcCCCCCcEEEccCCCCChhHHHHhcCCCCCCEEEcCCCCCChhh
Q 007693 101 RRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLV 180 (593)
Q Consensus 101 ~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 180 (593)
. ++.....+|+++++|++|++++| .++...+..++++++|++|++++|.+++..+..++++++|++|++++|.+.+..
T Consensus 84 ~-l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 161 (680)
T 1ziw_A 84 E-LSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK 161 (680)
T ss_dssp C-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBC
T ss_pred c-cCccChhhhccCCCCCEEECCCC-ccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccC
Confidence 7 76655556888889999999888 566666667888889999999998888776677788889999999998888877
Q ss_pred HHHhh--cCCCCCEEEccCCccCccchHhhcCC---------------------------CCCCeeeccccCCcCCC---
Q 007693 181 LRSLQ--VLTKLEYLDLWGSQVSNRGAAVLKMF---------------------------PRLSFLNLAWTGVTKLP--- 228 (593)
Q Consensus 181 ~~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l---------------------------~~L~~L~l~~n~l~~l~--- 228 (593)
+..+. .+++|++|++++|.+++..+..+..+ ++|+.|++++|.+++..
T Consensus 162 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~ 241 (680)
T 1ziw_A 162 SEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241 (680)
T ss_dssp HHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTT
T ss_pred HHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhH
Confidence 77664 45789999998888877766655443 33444555555444321
Q ss_pred --CC--CCCcEEEcCCCcccchhc-ccCCCCCcceEeccCccccchhhH-------------------------------
Q 007693 229 --NI--SSLECLNLSNCTIDSILE-GNENKAPLAKISLAGTTFINEREA------------------------------- 272 (593)
Q Consensus 229 --~l--~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~l~~n~~~~~~~~------------------------------- 272 (593)
.+ ++|++|++++|.+..+++ .+..+++|++|++++|.+.+.++.
T Consensus 242 ~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~ 321 (680)
T 1ziw_A 242 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKID 321 (680)
T ss_dssp TGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEEC
T ss_pred hhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccC
Confidence 22 236677777766665443 344666677777666666543321
Q ss_pred -HhhhcCCCccEEeccCCCcchh--hhcccCCCccEEEccCCCCChh--HHHHHHhc-cCCCcEEEcCCCCCCCchHHHH
Q 007693 273 -FLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDD--SVEMVACV-GANLRNLNLSNTRFSSAGVGIL 346 (593)
Q Consensus 273 -~~~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~L~~n~l~~~--~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~ 346 (593)
..+..+++|++|++++|.+.++ ..+..+++|++|++++|.+... ....+... .++|+.|++++|.+++..+..+
T Consensus 322 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~ 401 (680)
T 1ziw_A 322 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF 401 (680)
T ss_dssp TTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTT
T ss_pred hhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhh
Confidence 1233455666666666666555 3355566666666665542211 11111111 1356666666666666655444
Q ss_pred HcCCCCCcEEEccCCCCChHHH-HHhhcCCCCCEEEeeCCccCccccccccchh----------h----hhhHHhhccCC
Q 007693 347 AGHLPNLEILSLSGTQIDDYAI-SYMSMMPSLKFIDISNTDIKGFIQQVGAETD----------L----VLSLTALQNLN 411 (593)
Q Consensus 347 ~~~~~~L~~L~l~~n~i~~~~~-~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~----------~----~~~~~~~~~l~ 411 (593)
+.+++|++|++++|.+++..+ ..+.++++|++|++++|++.+..+....... . ......+..++
T Consensus 402 -~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~ 480 (680)
T 1ziw_A 402 -SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR 480 (680)
T ss_dssp -TTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCT
T ss_pred -hCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCC
Confidence 457778888888777765332 4566777777777777776554433100000 0 00001456667
Q ss_pred ccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHH--------hhhcCCCCcEEEecCcccCcccccCccCCC
Q 007693 412 HLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLH--------QLSSLSKLTNLSIRDAVLTNSGLGSFKPPR 483 (593)
Q Consensus 412 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 483 (593)
+|++|++++|.+++..+..|..+++|++|++++|++++..+. .|.++++|+.|++++|+++.+++..|..++
T Consensus 481 ~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~ 560 (680)
T 1ziw_A 481 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF 560 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccccc
Confidence 777777777777776666677777777777777777654221 256677777777777777766666677777
Q ss_pred CCceEecCCCcc
Q 007693 484 SLKLLDLHGGWL 495 (593)
Q Consensus 484 ~L~~L~l~~n~~ 495 (593)
+|+.|++++|.+
T Consensus 561 ~L~~L~Ls~N~l 572 (680)
T 1ziw_A 561 ELKIIDLGLNNL 572 (680)
T ss_dssp TCCEEECCSSCC
T ss_pred CcceeECCCCCC
Confidence 777777777776
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8.2e-44 Score=385.86 Aligned_cols=452 Identities=19% Similarity=0.192 Sum_probs=375.7
Q ss_pred hcCCccEEEecCCCCCChhHHHHHhcCCCccEEEcCCCCccCchHHHhhhCCCCCcEEecCCCCCCChhhHHhhcCCCCC
Q 007693 63 FKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTL 142 (593)
Q Consensus 63 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~~~~L 142 (593)
+.+++++|+|++|. +....+..|+++++|++|+|++|. +....+.+|.++++|++|++++| .++...+..++++++|
T Consensus 31 l~~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L 107 (606)
T 3t6q_A 31 LPNSTECLEFSFNV-LPTIQNTTFSRLINLTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTAN-PLIFMAETALSGPKAL 107 (606)
T ss_dssp SCTTCCEEECTTCC-CSEECTTTSTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTC-CCSEECTTTTSSCTTC
T ss_pred CCCcCcEEEccCCc-cCcCChhHhccCccceEEECCCCc-cceeChhhccCccccCeeeCCCC-cccccChhhhcccccc
Confidence 34679999999997 666667789999999999999998 88877888999999999999999 6887778889999999
Q ss_pred cEEEccCCCCChhHHHHhcCCCCCCEEEcCCCCCChhhHHHhhcCCCCCEEEccCCccCccchHhhcCCCCCC--eeecc
Q 007693 143 EKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLS--FLNLA 220 (593)
Q Consensus 143 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~--~L~l~ 220 (593)
++|++++|.+++..+..++.+++|++|++++|.+.+.....+..+++|++|++++|.+++..+..+..+++|+ .|+++
T Consensus 108 ~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~ 187 (606)
T 3t6q_A 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLN 187 (606)
T ss_dssp CEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECT
T ss_pred cEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecC
Confidence 9999999999998777899999999999999999886545566699999999999999999899999999999 89999
Q ss_pred ccCCcCCC----CCC----------------------------------------------------CCcEEEcCCCccc
Q 007693 221 WTGVTKLP----NIS----------------------------------------------------SLECLNLSNCTID 244 (593)
Q Consensus 221 ~n~l~~l~----~l~----------------------------------------------------~L~~L~l~~n~l~ 244 (593)
+|.++.++ ... +|+.|++++|.+.
T Consensus 188 ~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~ 267 (606)
T 3t6q_A 188 GNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267 (606)
T ss_dssp TCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS
T ss_pred CCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC
Confidence 99876533 111 5777888888888
Q ss_pred chhcc-cCCCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcchh--hhcccCCCccEEEccCCCCChhHHH-H
Q 007693 245 SILEG-NENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVE-M 320 (593)
Q Consensus 245 ~l~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~L~~n~l~~~~~~-~ 320 (593)
.+++. +..+++|++|++++|.+..+|.. +..+++|++|++++|.+... ..+..+++|++|++++|.+.+..+. .
T Consensus 268 ~~~~~~~~~l~~L~~L~l~~n~l~~lp~~--l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 345 (606)
T 3t6q_A 268 NISSNTFHCFSGLQELDLTATHLSELPSG--LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345 (606)
T ss_dssp SCCTTTTTTCTTCSEEECTTSCCSCCCSS--CCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSST
T ss_pred ccCHHHhccccCCCEEeccCCccCCCChh--hcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhh
Confidence 77766 45889999999999999888765 34789999999999998877 5678899999999999987744333 3
Q ss_pred HHhccCCCcEEEcCCCCCCCch--HHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccch
Q 007693 321 VACVGANLRNLNLSNTRFSSAG--VGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAET 398 (593)
Q Consensus 321 ~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~ 398 (593)
+..+ ++|++|++++|.+++.. +..+ +.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+.
T Consensus 346 ~~~l-~~L~~L~l~~n~l~~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----- 418 (606)
T 3t6q_A 346 LENL-ENLRELDLSHDDIETSDCCNLQL-RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ----- 418 (606)
T ss_dssp TTTC-TTCCEEECCSSCCCEEEESTTTT-TTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTC-----
T ss_pred hhcc-CcCCEEECCCCccccccCcchhc-ccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccc-----
Confidence 4444 89999999999988765 3333 6789999999999999888788888999999999999998877654
Q ss_pred hhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCch---hHHhhhcCCCCcEEEecCcccCccc
Q 007693 399 DLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDV---SLHQLSSLSKLTNLSIRDAVLTNSG 475 (593)
Q Consensus 399 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~l~~L~~L~L~~n~l~~~~ 475 (593)
..+..+++|++|++++|.+++..+..+..+++|++|++++|++++. .+..+..+++|+.|++++|++++..
T Consensus 419 ------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 492 (606)
T 3t6q_A 419 ------SPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID 492 (606)
T ss_dssp ------CTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEEC
T ss_pred ------hhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccC
Confidence 1488999999999999999998888999999999999999999873 2256889999999999999999999
Q ss_pred ccCccCCCCCceEecCCCccCCHHHHHHHHhhCCcEEEEeeeccccCCCCCCCCCCCCCcchhhhhh
Q 007693 476 LGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASL 542 (593)
Q Consensus 476 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 542 (593)
+..|..+++|+.|++++|++ .+..+..+. .++.+ ......|.+.+..|..+..++..
T Consensus 493 ~~~~~~l~~L~~L~Ls~N~l-~~~~~~~l~-~l~~L--------~L~L~~N~l~~~~~~~~~~l~~L 549 (606)
T 3t6q_A 493 QHAFTSLKMMNHVDLSHNRL-TSSSIEALS-HLKGI--------YLNLASNHISIILPSLLPILSQQ 549 (606)
T ss_dssp TTTTTTCTTCCEEECCSSCC-CGGGGGGGT-TCCSC--------EEECCSSCCCCCCGGGHHHHHTS
T ss_pred hhhhccccCCCEEECCCCcc-CcCChhHhC-ccccc--------EEECcCCcccccCHhhcccCCCC
Confidence 99999999999999999998 433333332 22322 12345788888778777766553
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.7e-45 Score=407.91 Aligned_cols=446 Identities=19% Similarity=0.220 Sum_probs=286.6
Q ss_pred HhHhhhhcccccCchHHHHHHHHHHHHhcccChhhHhhhcCCccEEEecCCCCCChhHHHHHhcCCCccEEEcCCCCccC
Q 007693 25 QKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVT 104 (593)
Q Consensus 25 ~~~~~~~~~l~~lp~~l~~~~l~~l~~~~~~~p~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~ 104 (593)
..++|+..+++.+|. ++. ++++|+|++|. +....+..|.++++|++|+|++|..+.
T Consensus 7 ~~~dcs~~~L~~vP~-lp~----------------------~l~~LdLs~N~-i~~i~~~~~~~l~~L~~LdLs~n~~~~ 62 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ-VLN----------------------TTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPL 62 (844)
T ss_dssp EEEEESCCCSSCCCS-SCT----------------------TCCEEEEESCC-CCEECSSSCSSCCSCSEEEECTTCCCC
T ss_pred eEEEccCCCCCCCCC-CCC----------------------CcCEEECCCCc-CCccChhHCcccccCeEEeCCCCCCcc
Confidence 467888899999997 443 47777777765 555445566677777777777765444
Q ss_pred chHHHhhhCCCCCcEEecCCCCCCChhhHHhhcCCCCCcEEEccCCCCChhHHH--HhcCCCCCCEEEcCCCCCChhhH-
Q 007693 105 SSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIA--LLSSLQNLSVLDLGGLPVTDLVL- 181 (593)
Q Consensus 105 ~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~- 181 (593)
...+.+|.++++|++|+|++| .+....+..|+++++|++|++++|.+++..+. .|+++++|++|++++|.+.+..+
T Consensus 63 ~i~~~~f~~L~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~ 141 (844)
T 3j0a_A 63 TIDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH 141 (844)
T ss_dssp EECTTTTSSCTTCCEEECTTC-CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCC
T ss_pred ccCHHHhcCCCCCCEEECCCC-cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccc
Confidence 444556667777777777776 45655566666777777777777766653333 26667777777777776665433
Q ss_pred HHhhcCCCCCEEEccCCccCccchHhhcCC--CC------------------------------CCeeeccccCCcC---
Q 007693 182 RSLQVLTKLEYLDLWGSQVSNRGAAVLKMF--PR------------------------------LSFLNLAWTGVTK--- 226 (593)
Q Consensus 182 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~------------------------------L~~L~l~~n~l~~--- 226 (593)
..|+++++|++|++++|.+++..+..+..+ ++ |+.|++++|.++.
T Consensus 142 ~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 221 (844)
T 3j0a_A 142 PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDIT 221 (844)
T ss_dssp GGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTT
T ss_pred hhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHH
Confidence 456667777777777776665544444333 33 5555555553321
Q ss_pred --------------------------------------CCC--CCCCcEEEcCCCcccchhc-ccCCCCCcceEeccCcc
Q 007693 227 --------------------------------------LPN--ISSLECLNLSNCTIDSILE-GNENKAPLAKISLAGTT 265 (593)
Q Consensus 227 --------------------------------------l~~--l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~l~~n~ 265 (593)
+.. .++|+.|++++|.+..+++ .+..+++|+.|++++|.
T Consensus 222 ~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 301 (844)
T 3j0a_A 222 GNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK 301 (844)
T ss_dssp SGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCC
T ss_pred HHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCc
Confidence 000 2456777777777665543 33467777777777777
Q ss_pred ccchhhHHhhhcCCCccEEeccCCCcchh--hhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchH
Q 007693 266 FINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGV 343 (593)
Q Consensus 266 ~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 343 (593)
+..+++. .+..+++|++|++++|.++.+ ..+..+++|++|++++|.+++..+..+..+ ++|++|++++|.+++...
T Consensus 302 i~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l-~~L~~L~Ls~N~l~~i~~ 379 (844)
T 3j0a_A 302 INKIADE-AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL-EKLQTLDLRDNALTTIHF 379 (844)
T ss_dssp CCEECTT-TTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSC-CCCCEEEEETCCSCCCSS
T ss_pred CCCCChH-HhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCC-CCCCEEECCCCCCCcccC
Confidence 7765443 245677778888887777666 466777778888888777766555444444 777777777777665321
Q ss_pred HHHHcCCCCCcEEE--------------------ccCCCCChH-HHHHhhcCCCCCEEEeeCCccCccccccccc-----
Q 007693 344 GILAGHLPNLEILS--------------------LSGTQIDDY-AISYMSMMPSLKFIDISNTDIKGFIQQVGAE----- 397 (593)
Q Consensus 344 ~~~~~~~~~L~~L~--------------------l~~n~i~~~-~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~----- 397 (593)
+++|+.|+ +++|.+++. .+..+..+++|+.|++++|++.+..+.....
T Consensus 380 ------~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L 453 (844)
T 3j0a_A 380 ------IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSL 453 (844)
T ss_dssp ------CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTC
T ss_pred ------CCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCcc
Confidence 23333333 333333321 1222446677777777777766433221000
Q ss_pred ------hhhh-------hhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEE
Q 007693 398 ------TDLV-------LSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNL 464 (593)
Q Consensus 398 ------~~~~-------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 464 (593)
...+ .....|.++++|++|+|++|.+++..+..|..+++|+.|+|++|+++++.+..+. ++|+.|
T Consensus 454 ~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L 531 (844)
T 3j0a_A 454 EQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEIL 531 (844)
T ss_dssp CBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEE
T ss_pred ccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEE
Confidence 0000 0002366778888888888888887777788888888888888888887665554 788888
Q ss_pred EecCcccCcccccCccCCCCCceEecCCCccCCHHHHHHHHhhC
Q 007693 465 SIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMH 508 (593)
Q Consensus 465 ~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 508 (593)
++++|++++..+..+ .+|+.|++++|++.|+|.+.++..|.
T Consensus 532 ~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~~~f~~~~ 572 (844)
T 3j0a_A 532 DISRNQLLAPNPDVF---VSLSVLDITHNKFICECELSTFINWL 572 (844)
T ss_dssp EEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSCCSHHHHH
T ss_pred ECCCCcCCCCChhHh---CCcCEEEecCCCcccccccHHHHHHH
Confidence 888888888877665 47899999999999998877665543
No 11
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.7e-43 Score=376.03 Aligned_cols=434 Identities=18% Similarity=0.184 Sum_probs=319.0
Q ss_pred hHhhhhcccccCchHHHHHHHHHHHHhcccChhhHhhhcCCccEEEecCCCCCChhHHHHHhcCCCccEEEcCCCCccCc
Q 007693 26 KWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTS 105 (593)
Q Consensus 26 ~~~~~~~~l~~lp~~l~~~~l~~l~~~~~~~p~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~ 105 (593)
.+++++..++.+|..++ +++++|+|++|. +....+..|.++++|++|+|++|+ ++.
T Consensus 4 ~l~ls~n~l~~ip~~~~----------------------~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~-l~~ 59 (520)
T 2z7x_B 4 LVDRSKNGLIHVPKDLS----------------------QKTTILNISQNY-ISELWTSDILSLSKLRILIISHNR-IQY 59 (520)
T ss_dssp EEECTTSCCSSCCCSCC----------------------TTCSEEECCSSC-CCCCCHHHHTTCTTCCEEECCSSC-CCE
T ss_pred eEecCCCCccccccccc----------------------ccccEEECCCCc-ccccChhhccccccccEEecCCCc-cCC
Confidence 45667777888875443 359999999997 666667889999999999999998 888
Q ss_pred hHHHhhhCCCCCcEEecCCCCCCChhhHHhhcCCCCCcEEEccCCCCChh-HHHHhcCCCCCCEEEcCCCCCChhhHHHh
Q 007693 106 SALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTAD-GIALLSSLQNLSVLDLGGLPVTDLVLRSL 184 (593)
Q Consensus 106 ~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l 184 (593)
..+.+++++++|++|++++| .++.. +.. .+++|++|++++|.+++. .+..|+.+++|++|++++|.+.+ ..+
T Consensus 60 ~~~~~~~~l~~L~~L~Ls~N-~l~~l-p~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~ 132 (520)
T 2z7x_B 60 LDISVFKFNQELEYLDLSHN-KLVKI-SCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSV 132 (520)
T ss_dssp EEGGGGTTCTTCCEEECCSS-CCCEE-ECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGG
T ss_pred cChHHhhcccCCCEEecCCC-ceeec-Ccc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhc
Confidence 77888999999999999999 56642 222 799999999999999874 45789999999999999999987 356
Q ss_pred hcCCCC--CEEEccCCcc--CccchHhhcCCC-CCCeeeccccCCcC------CCCCCCCcEEEcCCCc-------ccch
Q 007693 185 QVLTKL--EYLDLWGSQV--SNRGAAVLKMFP-RLSFLNLAWTGVTK------LPNISSLECLNLSNCT-------IDSI 246 (593)
Q Consensus 185 ~~l~~L--~~L~L~~n~l--~~~~~~~l~~l~-~L~~L~l~~n~l~~------l~~l~~L~~L~l~~n~-------l~~l 246 (593)
..+++| ++|++++|.+ .+..+..+..+. ....+++++|.+.+ +..+++|+.|++++|. +.+.
T Consensus 133 ~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 212 (520)
T 2z7x_B 133 LPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSI 212 (520)
T ss_dssp GGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHH
T ss_pred cccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecc
Confidence 777888 9999999998 666666666543 12233444444332 2245555555555554 3332
Q ss_pred hcccCCCCCcceEeccCccccchhh--HHhhhcCCCccEEeccCCCcch-h-hhc-----ccC-----------------
Q 007693 247 LEGNENKAPLAKISLAGTTFINERE--AFLYIETSLLSFLDVSNSSLSR-F-CFL-----TQM----------------- 300 (593)
Q Consensus 247 ~~~~~~~~~L~~L~l~~n~~~~~~~--~~~~~~~~~L~~L~ls~n~l~~-~-~~l-----~~~----------------- 300 (593)
.+.+..+++|+.|++++|.+.+... .......++|++|++++|.+.+ + ..+ ..+
T Consensus 213 ~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~ 292 (520)
T 2z7x_B 213 LAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQ 292 (520)
T ss_dssp HHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCT
T ss_pred hhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecch
Confidence 2344455555555555554443111 0001112345555555554442 1 112 333
Q ss_pred ---------CCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCCh--HHHH
Q 007693 301 ---------KALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDD--YAIS 369 (593)
Q Consensus 301 ---------~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~--~~~~ 369 (593)
++|++|++++|.+.+... ...+++|++|++++|.+++..+..+ +.+++|++|++++|.+++ ..+.
T Consensus 293 ~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~l~~~~~ 368 (520)
T 2z7x_B 293 SYIYEIFSNMNIKNFTVSGTRMVHMLC---PSKISPFLHLDFSNNLLTDTVFENC-GHLTELETLILQMNQLKELSKIAE 368 (520)
T ss_dssp HHHHHHHHTCCCSEEEEESSCCCCCCC---CSSCCCCCEEECCSSCCCTTTTTTC-CCCSSCCEEECCSSCCCBHHHHHH
T ss_pred hhhhcccccCceeEEEcCCCccccccc---hhhCCcccEEEeECCccChhhhhhh-ccCCCCCEEEccCCccCccccchH
Confidence 345566666655543221 0233899999999999998666655 679999999999999997 4567
Q ss_pred HhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCc
Q 007693 370 YMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTD 449 (593)
Q Consensus 370 ~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 449 (593)
.+..+++|++|++++|.+.+..+. ..+..+++|++|++++|.+++..+..+. ++|++|++++|+++.
T Consensus 369 ~~~~l~~L~~L~Ls~N~l~~~l~~-----------~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ 435 (520)
T 2z7x_B 369 MTTQMKSLQQLDISQNSVSYDEKK-----------GDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKS 435 (520)
T ss_dssp HHTTCTTCCEEECCSSCCBCCGGG-----------CSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCC
T ss_pred HHhhCCCCCEEECCCCcCCccccc-----------chhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccc
Confidence 789999999999999999984443 1478899999999999999887776654 789999999999996
Q ss_pred hhHHhhhcCCCCcEEEecCcccCcccccCccCCCCCceEecCCCccCCHHHHHHH-HhhC
Q 007693 450 VSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQF-CKMH 508 (593)
Q Consensus 450 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-~~~~ 508 (593)
+|..+..+++|+.|++++|++++++...+..+++|+.|++++|++.|+|...++ ..|.
T Consensus 436 -ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~ 494 (520)
T 2z7x_B 436 -IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 494 (520)
T ss_dssp -CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHH
T ss_pred -cchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCchHHHHHHH
Confidence 555667999999999999999987666688899999999999999999999888 5554
No 12
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=9.3e-44 Score=387.97 Aligned_cols=441 Identities=17% Similarity=0.190 Sum_probs=332.3
Q ss_pred HhHhhhhcccccCchHHHHHHHHHHHHhcccChhhHhhhcCCccEEEecCCCCCChhHHHHHhcCCCccEEEcCCCCccC
Q 007693 25 QKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVT 104 (593)
Q Consensus 25 ~~~~~~~~~l~~lp~~l~~~~l~~l~~~~~~~p~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~ 104 (593)
..++|++.++++||+.++. ++++|||++|. ++...+..|.++++|++|+|++|+ ++
T Consensus 34 ~~~~c~~~~l~~vP~~lp~----------------------~~~~LdLs~N~-i~~l~~~~f~~l~~L~~L~Ls~N~-i~ 89 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNLPF----------------------STKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCE-IQ 89 (635)
T ss_dssp TEEECTTSCCSSCCSSSCT----------------------TCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCC-CC
T ss_pred CEEECCCCCcCccCCCCCc----------------------CCCEEEeeCCC-CCCCCHHHHhCCCCCCEEECCCCc-CC
Confidence 4578999999999987765 49999999997 666666789999999999999998 88
Q ss_pred chHHHhhhCCCCCcEEecCCCCCCChhhHHhhcCCCCCcEEEccCCCCChhHHHHhcCCCCCCEEEcCCCCCChh-hHHH
Q 007693 105 SSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDL-VLRS 183 (593)
Q Consensus 105 ~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~ 183 (593)
...+.+|.++++|++|+|++| .++...+..|.++++|++|++++|++++..+..|+++++|++|++++|.+... .+..
T Consensus 90 ~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~ 168 (635)
T 4g8a_A 90 TIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 168 (635)
T ss_dssp EECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG
T ss_pred CcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchh
Confidence 877888999999999999999 68887778899999999999999999988777899999999999999998764 4677
Q ss_pred hhcCCCCCEEEccCCccCccchHhhcCCCCCC----eeeccccCCcCCC-------------------------------
Q 007693 184 LQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLS----FLNLAWTGVTKLP------------------------------- 228 (593)
Q Consensus 184 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~----~L~l~~n~l~~l~------------------------------- 228 (593)
+..+++|++|++++|.+++..+..+..+.+++ .++++.|.++.++
T Consensus 169 ~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l 248 (635)
T 4g8a_A 169 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGL 248 (635)
T ss_dssp GGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTT
T ss_pred hccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCC
Confidence 88999999999999999887776665433322 3444444332111
Q ss_pred -------------------------------------------------------CCCCCcEEEcCCCcccchhcccCCC
Q 007693 229 -------------------------------------------------------NISSLECLNLSNCTIDSILEGNENK 253 (593)
Q Consensus 229 -------------------------------------------------------~l~~L~~L~l~~n~l~~l~~~~~~~ 253 (593)
....++.+++.++.+..++. +...
T Consensus 249 ~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~ 327 (635)
T 4g8a_A 249 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD-FSYN 327 (635)
T ss_dssp TTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG-GGSC
T ss_pred cccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc-cccc
Confidence 01123333333333333221 2244
Q ss_pred CCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcchhhhcccCCCccEEEccCCCC--------------------
Q 007693 254 APLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMI-------------------- 313 (593)
Q Consensus 254 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~L~~n~l-------------------- 313 (593)
..++.|++.+|.+..++.. .+..|+.++++.|..........+++|+.+++++|.+
T Consensus 328 ~~L~~L~l~~~~~~~~~~~----~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~ 403 (635)
T 4g8a_A 328 FGWQHLELVNCKFGQFPTL----KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLD 403 (635)
T ss_dssp CCCSEEEEESCEESSCCCC----BCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEE
T ss_pred hhhhhhhcccccccCcCcc----cchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhh
Confidence 5677777777766554321 2344444444444444333333444444444444443
Q ss_pred ------ChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCcc
Q 007693 314 ------GDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDI 387 (593)
Q Consensus 314 ------~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i 387 (593)
.... ..+... ++|+.+++..+..........+..+++++.++++.|.+....+..+..+++|+.|++++|.+
T Consensus 404 ~~~~~~~~~~-~~~~~l-~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~ 481 (635)
T 4g8a_A 404 LSFNGVITMS-SNFLGL-EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 481 (635)
T ss_dssp CCSCSEEEEC-SCCTTC-TTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEE
T ss_pred cccccccccc-cccccc-ccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhccc
Confidence 3211 111222 56667777666544433333335678899999999998887777788899999999999975
Q ss_pred C-ccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEe
Q 007693 388 K-GFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSI 466 (593)
Q Consensus 388 ~-~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 466 (593)
. +..+. .|..+++|++|+|++|++++..|..|..+++|++|+|++|+|+++.+..|.++++|++|+|
T Consensus 482 ~~~~~~~------------~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 549 (635)
T 4g8a_A 482 QENFLPD------------IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 549 (635)
T ss_dssp GGGEECS------------CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEEC
T ss_pred ccccCch------------hhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEEC
Confidence 4 44555 6899999999999999999988999999999999999999999999989999999999999
Q ss_pred cCcccCcccccCccCC-CCCceEecCCCccCCHHHHHHHHhhCC
Q 007693 467 RDAVLTNSGLGSFKPP-RSLKLLDLHGGWLLTEDAILQFCKMHP 509 (593)
Q Consensus 467 ~~n~l~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~~ 509 (593)
++|+|++..+..+..+ ++|+.|+|++|++.|+|...||..|+.
T Consensus 550 s~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~ 593 (635)
T 4g8a_A 550 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIK 593 (635)
T ss_dssp TTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHH
T ss_pred CCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHH
Confidence 9999999999999887 689999999999999999999988764
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=8.3e-43 Score=377.94 Aligned_cols=406 Identities=18% Similarity=0.163 Sum_probs=297.5
Q ss_pred ccEEEecCCCCCChhHHHHHhcCCCccEEEcCCCCccCchHHHhhhCCCCCcEEecCCCCCCChhhHHhhcCCCCCcEEE
Q 007693 67 AEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLW 146 (593)
Q Consensus 67 L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~~~~L~~L~ 146 (593)
-++++.++++ ++ .+|..+ .++|++|+|++|. ++.....++.++++|++|++++| .++...+..|.++++|++|+
T Consensus 13 ~~~~~c~~~~-l~-~ip~~~--~~~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~ 86 (606)
T 3vq2_A 13 NITYQCMDQK-LS-KVPDDI--PSSTKNIDLSFNP-LKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLI 86 (606)
T ss_dssp TTEEECTTSC-CS-SCCTTS--CTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEE
T ss_pred CCceEccCCC-cc-cCCCCC--CCCcCEEECCCCC-cCEeChhhccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeE
Confidence 4678888876 32 223222 3789999999988 88877778999999999999999 68887788899999999999
Q ss_pred ccCCCCChhHHHHhcCCCCCCEEEcCCCCCChhhHHHhhcCCCCCEEEccCCccCc-cchHhhcCCCCCCeeeccccCCc
Q 007693 147 LSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSN-RGAAVLKMFPRLSFLNLAWTGVT 225 (593)
Q Consensus 147 L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~ 225 (593)
+++|.+++..+..|+++++|++|++++|.+.+..+..++++++|++|++++|.+.+ ..|..++.+++|++|++++|.++
T Consensus 87 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 87 LTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp CTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred CCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcce
Confidence 99999999888889999999999999999998877789999999999999999986 45889999999999999999887
Q ss_pred CCC-----C---CCC-CcEEEcCCCcccchhcccC---------------------------------------------
Q 007693 226 KLP-----N---ISS-LECLNLSNCTIDSILEGNE--------------------------------------------- 251 (593)
Q Consensus 226 ~l~-----~---l~~-L~~L~l~~n~l~~l~~~~~--------------------------------------------- 251 (593)
.++ . ++. +.+|++++|.++.+++..+
T Consensus 167 ~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 246 (606)
T 3vq2_A 167 TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN 246 (606)
T ss_dssp EECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred ecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCc
Confidence 643 1 221 3356666665555444433
Q ss_pred ------------------------------------CCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcchhh
Q 007693 252 ------------------------------------NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFC 295 (593)
Q Consensus 252 ------------------------------------~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~ 295 (593)
.+++|+.|+++++.+..++ .+..+++|+.|++++|.+..++
T Consensus 247 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~---~l~~~~~L~~L~l~~n~l~~lp 323 (606)
T 3vq2_A 247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE---DVPKHFKWQSLSIIRCQLKQFP 323 (606)
T ss_dssp CSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC---CCCTTCCCSEEEEESCCCSSCC
T ss_pred ccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh---hccccccCCEEEcccccCcccc
Confidence 3345555556666555555 3446778888888888775554
Q ss_pred hc---------------------ccCCCccEEEccCCCCChhH--HHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCC
Q 007693 296 FL---------------------TQMKALEHLDLSSSMIGDDS--VEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPN 352 (593)
Q Consensus 296 ~l---------------------~~~~~L~~L~L~~n~l~~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 352 (593)
.+ ..+++|++|++++|.+++.. +..+..+ ++|++|++++|.+++.+ .. +..+++
T Consensus 324 ~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~-~~-~~~l~~ 400 (606)
T 3vq2_A 324 TLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGT-NSLRHLDLSFNGAIIMS-AN-FMGLEE 400 (606)
T ss_dssp CCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCC-SCCCEEECCSCSEEEEC-CC-CTTCTT
T ss_pred cCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccC-CcccEeECCCCccccch-hh-ccCCCC
Confidence 33 23445555555555554432 3334443 56666666666555443 12 244666
Q ss_pred CcEEEccCCCCChHHH-HHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCC-Ccccc
Q 007693 353 LEILSLSGTQIDDYAI-SYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSD-ATLFP 430 (593)
Q Consensus 353 L~~L~l~~n~i~~~~~-~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~ 430 (593)
|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+. .+..+++|++|++++|.+++ ..|..
T Consensus 401 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------~~~~l~~L~~L~l~~n~l~~~~~~~~ 468 (606)
T 3vq2_A 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG------------IFLGLTSLNTLKMAGNSFKDNTLSNV 468 (606)
T ss_dssp CCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTT------------TTTTCTTCCEEECTTCEEGGGEECSC
T ss_pred CCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchh------------hhcCCCCCCEEECCCCcCCCcchHHh
Confidence 6666666666665544 4556667777777777776665555 57777888888888888776 35677
Q ss_pred ccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcccccCccCCCCCceEecCCCccC
Q 007693 431 LSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLL 496 (593)
Q Consensus 431 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~ 496 (593)
+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|+.|++++|++.
T Consensus 469 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 469 FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred hccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 788888888888888888877777888888888888888888877778888888888888888874
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.5e-42 Score=381.66 Aligned_cols=407 Identities=14% Similarity=0.176 Sum_probs=301.1
Q ss_pred CCccEEEecCCCCCChhHHHHHhcCCCccEEEc-CCCCccCchH------------------------------------
Q 007693 65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNV-ADCRRVTSSA------------------------------------ 107 (593)
Q Consensus 65 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L-~~~~~i~~~~------------------------------------ 107 (593)
.+++.|+|++++ +.+.+++.++++++|++|+| ++|. +....
T Consensus 323 ~~V~~L~Ls~~~-L~G~ip~~l~~L~~L~~LdLss~N~-lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~ 400 (876)
T 4ecn_A 323 GRVTGLSLAGFG-AKGRVPDAIGQLTELKVLSFGTHSE-TVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL 400 (876)
T ss_dssp SCEEEEECTTTC-CEEEECGGGGGCTTCCEEESCCTTH-HHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGS
T ss_pred CCEEEEECccCC-CCCcCchHHhccccceEeeeccccc-ccccccccccccccccchhHHHHHHHhhhhhhhccCcchhh
Confidence 469999999998 77788899999999999999 6553 32210
Q ss_pred ----HHhhh-----------CCCCCcEEecCC--CCCCChhhHHhhcCCCCCcEEEccCCCCCh----------------
Q 007693 108 ----LWALT-----------GMTCLKELDLSR--CVKVTDAGMKHLLSISTLEKLWLSETGLTA---------------- 154 (593)
Q Consensus 108 ----~~~l~-----------~l~~L~~L~L~~--~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~---------------- 154 (593)
...+. ....++.+.+.. | .++. .+..++++++|++|+|++|.+++
T Consensus 401 s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N-~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~ 478 (876)
T 4ecn_A 401 SDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTN-RITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAK 478 (876)
T ss_dssp CHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSC-EEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred hHHHHHHhhhCccccccccccccchhhceeccccC-cccc-hhHHHhcCCCCCEEECcCCcCCCCccccccccccccccc
Confidence 00000 111233333333 2 3444 45678888888888888888887
Q ss_pred -hHHHHhc--CCCCCCEEEcCCCCCChhhHHHhhcCCCCCEEEccCCc-cCc-cchHhhcCCC-------CCCeeecccc
Q 007693 155 -DGIALLS--SLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQ-VSN-RGAAVLKMFP-------RLSFLNLAWT 222 (593)
Q Consensus 155 -~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~l~~l~-------~L~~L~l~~n 222 (593)
..|..++ ++++|++|++++|.+.+..|..+.++++|++|++++|. +++ ..|..+..++ +|+.|++++|
T Consensus 479 g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 479 QYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp HHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred ccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence 2555555 88888888888888888888888888888888888887 777 6676655544 8888888888
Q ss_pred CCcCCC------CCCCCcEEEcCCCcccchhcccCCCCCcceEeccCccccchhhHHhhhcCCC-ccEEeccCCCcchhh
Q 007693 223 GVTKLP------NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSL-LSFLDVSNSSLSRFC 295 (593)
Q Consensus 223 ~l~~l~------~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~-L~~L~ls~n~l~~~~ 295 (593)
.++.+| ++++|+.|++++|.+..+| .+..+++|+.|++++|.+..+|.. +..+++ |+.|++++|.++.++
T Consensus 559 ~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~--l~~l~~~L~~L~Ls~N~L~~lp 635 (876)
T 4ecn_A 559 NLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPED--FCAFTDQVEGLGFSHNKLKYIP 635 (876)
T ss_dssp CCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTT--SCEECTTCCEEECCSSCCCSCC
T ss_pred cCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHH--HhhccccCCEEECcCCCCCcCc
Confidence 877655 4678888888888888887 677888888888888888876654 447777 888888888888663
Q ss_pred -hcccC--CCccEEEccCCCCChhHHHHH---Hh-ccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHH
Q 007693 296 -FLTQM--KALEHLDLSSSMIGDDSVEMV---AC-VGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAI 368 (593)
Q Consensus 296 -~l~~~--~~L~~L~L~~n~l~~~~~~~~---~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~ 368 (593)
.+... ++|++|++++|.+++..+... .. .+++|+.|++++|.++..+...+ ..+++|+.|++++|.++..+.
T Consensus 636 ~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~-~~l~~L~~L~Ls~N~L~~ip~ 714 (876)
T 4ecn_A 636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELF-ATGSPISTIILSNNLMTSIPE 714 (876)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHH-HTTCCCSEEECCSCCCSCCCT
T ss_pred hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHH-ccCCCCCEEECCCCcCCccCh
Confidence 33333 348889999888876433211 10 11478899999998886655444 568889999999998885443
Q ss_pred HHhhc-------CCCCCEEEeeCCccCccccccccchhhhhhHHhhc--cCCccCEEecCCCCcCCCccccccCCCCCcE
Q 007693 369 SYMSM-------MPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQ--NLNHLERLNLEQTQVSDATLFPLSTFKELIH 439 (593)
Q Consensus 369 ~~l~~-------~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 439 (593)
..+.. +++|+.|+|++|++...+ . .+. .+++|+.|+|++|.+++ +|..+..+++|+.
T Consensus 715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp-~------------~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~ 780 (876)
T 4ecn_A 715 NSLKPKDGNYKNTYLLTTIDLRFNKLTSLS-D------------DFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKA 780 (876)
T ss_dssp TSSSCTTSCCTTGGGCCEEECCSSCCCCCC-G------------GGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCE
T ss_pred HHhccccccccccCCccEEECCCCCCccch-H------------HhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCE
Confidence 33332 238999999999988544 3 354 88899999999999988 6778888999999
Q ss_pred EecCC------CCCCchhHHhhhcCCCCcEEEecCcccCcccccCccCCCCCceEecCCCccC
Q 007693 440 LSLRN------ASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLL 496 (593)
Q Consensus 440 L~L~~------n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~ 496 (593)
|+|++ |++.+..|..+..+++|+.|+|++|+++.+ |..+. ++|+.|+|++|++.
T Consensus 781 L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~I-p~~l~--~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 781 FGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKV-DEKLT--PQLYILDIADNPNI 840 (876)
T ss_dssp EECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBC-CSCCC--SSSCEEECCSCTTC
T ss_pred EECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCcc-CHhhc--CCCCEEECCCCCCC
Confidence 99876 778888888889999999999999999544 55443 68999999999873
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.1e-42 Score=376.82 Aligned_cols=409 Identities=13% Similarity=0.184 Sum_probs=312.8
Q ss_pred CCccEEEecCCCCCChhHHHHHhcCCCccEEEcCCCCc------cCc--------------------------hHHHhh-
Q 007693 65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRR------VTS--------------------------SALWAL- 111 (593)
Q Consensus 65 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~------i~~--------------------------~~~~~l- 111 (593)
.+++.|+|++++ +.+.++..++++++|++|+|++|.. +.+ ..+..+
T Consensus 81 ~~V~~L~L~~~~-l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 81 GRVTGLSLEGFG-ASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159 (636)
T ss_dssp CCEEEEECTTSC-CEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEEecCcc-cCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence 479999999998 7778888999999999999999852 110 000000
Q ss_pred ------------------hCCCCCcEEecCC-CCCCChhhHHhhcCCCCCcEEEccCCCCChh-----------------
Q 007693 112 ------------------TGMTCLKELDLSR-CVKVTDAGMKHLLSISTLEKLWLSETGLTAD----------------- 155 (593)
Q Consensus 112 ------------------~~l~~L~~L~L~~-~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~----------------- 155 (593)
.....++.+.+.. +..++. .+..++++++|++|++++|.+++.
T Consensus 160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhccc
Confidence 0011222333322 224555 566788888888888888888874
Q ss_pred HHHHhc--CCCCCCEEEcCCCCCChhhHHHhhcCCCCCEEEccCCc-cCc-cchHhhcCC------CCCCeeeccccCCc
Q 007693 156 GIALLS--SLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQ-VSN-RGAAVLKMF------PRLSFLNLAWTGVT 225 (593)
Q Consensus 156 ~~~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~l~~l------~~L~~L~l~~n~l~ 225 (593)
.|..++ ++++|++|++++|.+.+..|..++++++|++|++++|. +++ ..|..+..+ ++|++|++++|.++
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 566667 88888888888888888888888888888888888887 877 777777665 88888888888877
Q ss_pred CCC------CCCCCcEEEcCCCccc-chhcccCCCCCcceEeccCccccchhhHHhhhcCCC-ccEEeccCCCcchhh-h
Q 007693 226 KLP------NISSLECLNLSNCTID-SILEGNENKAPLAKISLAGTTFINEREAFLYIETSL-LSFLDVSNSSLSRFC-F 296 (593)
Q Consensus 226 ~l~------~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~-L~~L~ls~n~l~~~~-~ 296 (593)
.+| .+++|++|++++|.+. .+| .+..+++|++|++++|.+..+|.. +..+++ |++|++++|.++.++ .
T Consensus 319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~--l~~l~~~L~~L~Ls~N~l~~lp~~ 395 (636)
T 4eco_A 319 TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPAN--FCGFTEQVENLSFAHNKLKYIPNI 395 (636)
T ss_dssp SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTT--SEEECTTCCEEECCSSCCSSCCSC
T ss_pred ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHh--hhhhcccCcEEEccCCcCcccchh
Confidence 655 4678888888888888 777 666888888888888888876665 447788 889999988888663 3
Q ss_pred cccC--CCccEEEccCCCCChhHHHHHH-------hccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHH
Q 007693 297 LTQM--KALEHLDLSSSMIGDDSVEMVA-------CVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA 367 (593)
Q Consensus 297 l~~~--~~L~~L~L~~n~l~~~~~~~~~-------~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~ 367 (593)
+... ++|++|++++|.+++..+..+. .. ++|++|++++|.++..+...+ ..+++|++|++++|.++...
T Consensus 396 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~-~~L~~L~Ls~N~l~~lp~~~~-~~l~~L~~L~Ls~N~l~~i~ 473 (636)
T 4eco_A 396 FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG-INVSSINLSNNQISKFPKELF-STGSPLSSINLMGNMLTEIP 473 (636)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCC-CCEEEEECCSSCCCSCCTHHH-HTTCCCSEEECCSSCCSBCC
T ss_pred hhhcccCccCEEECcCCcCCCcchhhhcccccccccC-CCCCEEECcCCccCcCCHHHH-ccCCCCCEEECCCCCCCCcC
Confidence 3433 3789999999988876665554 33 689999999999987666554 56889999999999988544
Q ss_pred HHHhhcCC-------CCCEEEeeCCccCccccccccchhhhhhHHhhc--cCCccCEEecCCCCcCCCccccccCCCCCc
Q 007693 368 ISYMSMMP-------SLKFIDISNTDIKGFIQQVGAETDLVLSLTALQ--NLNHLERLNLEQTQVSDATLFPLSTFKELI 438 (593)
Q Consensus 368 ~~~l~~~~-------~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 438 (593)
...+.... +|++|++++|+++..+.. +. .+++|++|+|++|++++ +|..+..+++|+
T Consensus 474 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-------------~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~ 539 (636)
T 4eco_A 474 KNSLKDENENFKNTYLLTSIDLRFNKLTKLSDD-------------FRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLK 539 (636)
T ss_dssp SSSSEETTEECTTGGGCCEEECCSSCCCBCCGG-------------GSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCC
T ss_pred HHHhccccccccccCCccEEECcCCcCCccChh-------------hhhccCCCcCEEECCCCCCCC-cChhhhcCCCCC
Confidence 44343332 899999999999854433 54 88999999999999998 788888999999
Q ss_pred EEec------CCCCCCchhHHhhhcCCCCcEEEecCcccCcccccCccCCCCCceEecCCCccCC
Q 007693 439 HLSL------RNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT 497 (593)
Q Consensus 439 ~L~L------~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 497 (593)
.|+| ++|++.+..|..+..+++|+.|++++|+++.+ |..+. ++|+.|++++|++.+
T Consensus 540 ~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~i-p~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 540 GFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKV-NEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp EEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBC-CSCCC--TTCCEEECCSCTTCE
T ss_pred EEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCcc-CHhHh--CcCCEEECcCCCCcc
Confidence 9999 46778888888999999999999999999655 45444 799999999998854
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.6e-42 Score=371.91 Aligned_cols=385 Identities=14% Similarity=0.143 Sum_probs=318.7
Q ss_pred CCccEEEcCCCCccCchHHHhhhCCCCCcEEecCCCCC------CC--------------------------hhhHHhhc
Q 007693 90 RYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVK------VT--------------------------DAGMKHLL 137 (593)
Q Consensus 90 ~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~------l~--------------------------~~~~~~l~ 137 (593)
.+++.|+|++|. +....+.+++.+++|++|+|++|.. +. ...+..+.
T Consensus 81 ~~V~~L~L~~~~-l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 81 GRVTGLSLEGFG-ASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159 (636)
T ss_dssp CCEEEEECTTSC-CEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEEecCcc-cCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence 589999999988 7777778899999999999999932 01 00000000
Q ss_pred -------------------CCCCCcEEEcc--CCCCChhHHHHhcCCCCCCEEEcCCCCCChh-----------------
Q 007693 138 -------------------SISTLEKLWLS--ETGLTADGIALLSSLQNLSVLDLGGLPVTDL----------------- 179 (593)
Q Consensus 138 -------------------~~~~L~~L~L~--~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~----------------- 179 (593)
....++.+.+. .|++++ .|..++++++|++|++++|.+++.
T Consensus 160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhccc
Confidence 01122222222 457777 567799999999999999999985
Q ss_pred hHHHhh--cCCCCCEEEccCCccCccchHhhcCCCCCCeeeccccC-CcC--CC----C------CCCCcEEEcCCCccc
Q 007693 180 VLRSLQ--VLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTG-VTK--LP----N------ISSLECLNLSNCTID 244 (593)
Q Consensus 180 ~~~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~--l~----~------l~~L~~L~l~~n~l~ 244 (593)
.|..++ ++++|++|++++|.+.+..|..+..+++|++|++++|. +++ +| . +++|++|++++|.++
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 788888 99999999999999999999999999999999999998 875 43 3 389999999999999
Q ss_pred chhc--ccCCCCCcceEeccCcccc-chhhHHhhhcCCCccEEeccCCCcchh-hhcccCCC-ccEEEccCCCCChhHHH
Q 007693 245 SILE--GNENKAPLAKISLAGTTFI-NEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKA-LEHLDLSSSMIGDDSVE 319 (593)
Q Consensus 245 ~l~~--~~~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~l~~~~~-L~~L~L~~n~l~~~~~~ 319 (593)
.+|. .+..+++|++|++++|.+. .++ .+..+++|++|++++|.++.+ ..+..+++ |++|++++|.++. .+.
T Consensus 319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip---~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~-lp~ 394 (636)
T 4eco_A 319 TFPVETSLQKMKKLGMLECLYNQLEGKLP---AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPN 394 (636)
T ss_dssp SCCCHHHHTTCTTCCEEECCSCCCEEECC---CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSS-CCS
T ss_pred ccCchhhhccCCCCCEEeCcCCcCccchh---hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcc-cch
Confidence 9998 8899999999999999999 565 456889999999999999977 56888999 9999999999984 444
Q ss_pred HHHhc-cCCCcEEEcCCCCCCCchHHHHHc-------CCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccc
Q 007693 320 MVACV-GANLRNLNLSNTRFSSAGVGILAG-------HLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFI 391 (593)
Q Consensus 320 ~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~-------~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~ 391 (593)
.+... .++|++|++++|.+++..+..+ . .+++|++|++++|.++...+..+..+++|++|++++|.+...+
T Consensus 395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~ 473 (636)
T 4eco_A 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNF-DPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIP 473 (636)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTTTCSS-CTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCC
T ss_pred hhhhcccCccCEEECcCCcCCCcchhhh-cccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcC
Confidence 33332 1489999999999998766544 3 5679999999999999777677778999999999999999554
Q ss_pred cccccchhhhhhHHhhccC-------CccCEEecCCCCcCCCcccccc--CCCCCcEEecCCCCCCchhHHhhhcCCCCc
Q 007693 392 QQVGAETDLVLSLTALQNL-------NHLERLNLEQTQVSDATLFPLS--TFKELIHLSLRNASLTDVSLHQLSSLSKLT 462 (593)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~l-------~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 462 (593)
+. .+... ++|++|+|++|.++. +|..+. .+++|+.|+|++|++++ +|..+..+++|+
T Consensus 474 ~~------------~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~ 539 (636)
T 4eco_A 474 KN------------SLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLK 539 (636)
T ss_dssp SS------------SSEETTEECTTGGGCCEEECCSSCCCB-CCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCC
T ss_pred HH------------HhccccccccccCCccEEECcCCcCCc-cChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCC
Confidence 44 33333 399999999999995 667776 99999999999999999 677899999999
Q ss_pred EEEe------cCcccCcccccCccCCCCCceEecCCCcc
Q 007693 463 NLSI------RDAVLTNSGLGSFKPPRSLKLLDLHGGWL 495 (593)
Q Consensus 463 ~L~L------~~n~l~~~~~~~~~~~~~L~~L~l~~n~~ 495 (593)
.|++ ++|++.+..|..+..+++|+.|++++|++
T Consensus 540 ~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 540 GFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp EEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred EEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 9999 56888888899999999999999999998
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.6e-42 Score=367.46 Aligned_cols=388 Identities=19% Similarity=0.207 Sum_probs=327.4
Q ss_pred cCCccEEEecCCCCCChhHHHHHhcCCCccEEEcCCCCccCchHHHhhhCCCCCcEEecCCCCCCChhhHHhhcCCCCCc
Q 007693 64 KHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLE 143 (593)
Q Consensus 64 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~~~~L~ 143 (593)
+++|++|+|++|. +....+..|+++++|++|+|++|. ++...+.+|.++++|++|++++| .++......++++++|+
T Consensus 51 l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~ 127 (570)
T 2z63_A 51 FPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLK 127 (570)
T ss_dssp CSSCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTS-CCCCSTTCSCTTCTTCC
T ss_pred CCCceEEECCCCc-CCccCcccccCchhCCEEeCcCCc-CCccCHhhhcCcccccccccccc-ccccCCCcccccccccc
Confidence 4779999999997 666556678899999999999988 77777778899999999999999 56665555688999999
Q ss_pred EEEccCCCCChh-HHHHhcCCCCCCEEEcCCCCCChhhHHHhhcCCCC----CEEEccCCccCccch-------------
Q 007693 144 KLWLSETGLTAD-GIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKL----EYLDLWGSQVSNRGA------------- 205 (593)
Q Consensus 144 ~L~L~~~~~~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L----~~L~L~~n~l~~~~~------------- 205 (593)
+|++++|.+++. .+..|+++++|++|++++|.+.+..+..++.+++| +.|++++|.+.+..+
T Consensus 128 ~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l 207 (570)
T 2z63_A 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL 207 (570)
T ss_dssp EEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEE
T ss_pred EEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEec
Confidence 999999988863 36778899999999999999988777777766666 677777765544322
Q ss_pred --------------------------------------------------------------------HhhcCCCCCCee
Q 007693 206 --------------------------------------------------------------------AVLKMFPRLSFL 217 (593)
Q Consensus 206 --------------------------------------------------------------------~~l~~l~~L~~L 217 (593)
..+..+++|+.|
T Consensus 208 ~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L 287 (570)
T 2z63_A 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF 287 (570)
T ss_dssp ESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEE
T ss_pred ccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEE
Confidence 334556889999
Q ss_pred eccccCCcCCC----CCCCCcEEEcCCCcccchhcccCCCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcch
Q 007693 218 NLAWTGVTKLP----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSR 293 (593)
Q Consensus 218 ~l~~n~l~~l~----~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~ 293 (593)
++++|.++.++ .+ +|++|++++|.+..+|. ..+++|++|++++|.+....+. ..+++|++|++++|.++.
T Consensus 288 ~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~---~~~~~L~~L~l~~n~l~~ 361 (570)
T 2z63_A 288 SLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSF 361 (570)
T ss_dssp EEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCBCCC---CBCTTCCEEECCSSCCBE
T ss_pred EecCccchhhhhhhccC-CccEEeeccCcccccCc--ccccccCEEeCcCCcccccccc---ccCCCCCEEeCcCCccCc
Confidence 99999888765 45 99999999999998876 4789999999999988765443 478999999999999986
Q ss_pred h----hhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHH
Q 007693 294 F----CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAIS 369 (593)
Q Consensus 294 ~----~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~ 369 (593)
. ..+..+++|++|++++|.+++.... +..+ ++|++|++++|.+++..+...+..+++|++|++++|.+.+..+.
T Consensus 362 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 439 (570)
T 2z63_A 362 KGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGL-EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439 (570)
T ss_dssp EEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETC-TTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTT
T ss_pred cccccccccccCccCEEECCCCcccccccc-cccc-CCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchh
Confidence 5 4677899999999999998875544 4444 89999999999988876533346799999999999999988888
Q ss_pred HhhcCCCCCEEEeeCCccC-ccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCC
Q 007693 370 YMSMMPSLKFIDISNTDIK-GFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT 448 (593)
Q Consensus 370 ~l~~~~~L~~L~Ls~n~i~-~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 448 (593)
.+..+++|++|++++|.+. +..|. .+..+++|++|++++|++++..|..+..+++|++|++++|+++
T Consensus 440 ~~~~l~~L~~L~l~~n~l~~~~~p~------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 507 (570)
T 2z63_A 440 IFNGLSSLEVLKMAGNSFQENFLPD------------IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507 (570)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEECS------------CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred hhhcCCcCcEEECcCCcCccccchh------------hhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCC
Confidence 8899999999999999997 45665 6899999999999999999988999999999999999999999
Q ss_pred chhHHhhhcCCCCcEEEecCcccCcc
Q 007693 449 DVSLHQLSSLSKLTNLSIRDAVLTNS 474 (593)
Q Consensus 449 ~~~~~~l~~l~~L~~L~L~~n~l~~~ 474 (593)
+..+..|..+++|+.|++++|++++.
T Consensus 508 ~~~~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 508 SVPDGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCHHHhhcccCCcEEEecCCcccCC
Confidence 99888899999999999999998864
No 18
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.1e-40 Score=357.45 Aligned_cols=433 Identities=16% Similarity=0.165 Sum_probs=311.0
Q ss_pred HhHhhhhcccccCchHHHHHHHHHHHHhcccChhhHhhhcCCccEEEecCCCCCChhHHHHHhcCCCccEEEcCCCCccC
Q 007693 25 QKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVT 104 (593)
Q Consensus 25 ~~~~~~~~~l~~lp~~l~~~~l~~l~~~~~~~p~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~ 104 (593)
+.+++++..++.+|..++ +++++|+|++|. +....+..|.++++|++|+|++|+ ++
T Consensus 34 ~~l~ls~~~L~~ip~~~~----------------------~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~-l~ 89 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLP----------------------PRTKALSLSQNS-ISELRMPDISFLSELRVLRLSHNR-IR 89 (562)
T ss_dssp CEEECTTSCCCSCCTTSC----------------------TTCCEEECCSSC-CCCCCGGGTTTCTTCCEEECCSCC-CC
T ss_pred cEEEcCCCCCccCCCCCC----------------------CCcCEEECCCCC-ccccChhhhccCCCccEEECCCCC-CC
Confidence 467777888888886443 358999999987 555556678889999999999887 87
Q ss_pred chHHHhhhCCCCCcEEecCCCCCCChhhHHhhcCCCCCcEEEccCCCCChhH-HHHhcCCCCCCEEEcCCCCCChhhHHH
Q 007693 105 SSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADG-IALLSSLQNLSVLDLGGLPVTDLVLRS 183 (593)
Q Consensus 105 ~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~ 183 (593)
...+.++.++++|++|++++| .++.. +.. .+++|++|++++|.+++.. +..|+++++|++|++++|.+.+. .
T Consensus 90 ~~~~~~~~~l~~L~~L~Ls~N-~l~~l-p~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~ 162 (562)
T 3a79_B 90 SLDFHVFLFNQDLEYLDVSHN-RLQNI-SCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---D 162 (562)
T ss_dssp EECTTTTTTCTTCCEEECTTS-CCCEE-CSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---T
T ss_pred cCCHHHhCCCCCCCEEECCCC-cCCcc-Ccc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---c
Confidence 777778888999999999998 56642 222 7889999999999888754 46788899999999999988764 3
Q ss_pred hhcCCCC--CEEEccCCcc--CccchHhhcCCC-CCCeeeccccCCcC------CCCCCCCcEEEcCCCc-----ccchh
Q 007693 184 LQVLTKL--EYLDLWGSQV--SNRGAAVLKMFP-RLSFLNLAWTGVTK------LPNISSLECLNLSNCT-----IDSIL 247 (593)
Q Consensus 184 l~~l~~L--~~L~L~~n~l--~~~~~~~l~~l~-~L~~L~l~~n~l~~------l~~l~~L~~L~l~~n~-----l~~l~ 247 (593)
+..+++| ++|++++|.+ ++..+..+..+. ..-.+++++|.+.. +..+++|+.+++++|. +....
T Consensus 163 ~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~ 242 (562)
T 3a79_B 163 LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL 242 (562)
T ss_dssp TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHH
T ss_pred hhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHH
Confidence 4455555 9999999888 666666665543 11133455554443 1245566666666663 12222
Q ss_pred cccCCCCCcceEeccCccccchh--hHHhhhcCCCccEEeccCCCcchh--hhc-----c--------------------
Q 007693 248 EGNENKAPLAKISLAGTTFINER--EAFLYIETSLLSFLDVSNSSLSRF--CFL-----T-------------------- 298 (593)
Q Consensus 248 ~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~~L~~L~ls~n~l~~~--~~l-----~-------------------- 298 (593)
..+..++.|+.+++.++.+.... ........++|++|++++|.+++. ..+ .
T Consensus 243 ~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~ 322 (562)
T 3a79_B 243 SELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKE 322 (562)
T ss_dssp HHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHH
T ss_pred HHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChh
Confidence 33334555555555554443211 000111223555555555554421 111 1
Q ss_pred ------cCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCCh--HHHHH
Q 007693 299 ------QMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDD--YAISY 370 (593)
Q Consensus 299 ------~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~--~~~~~ 370 (593)
...+|++|++++|.+..... ...+++|++|++++|.+++..+..+ +.+++|++|++++|.+++ ..+..
T Consensus 323 ~~~~~~~~~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~ 398 (562)
T 3a79_B 323 ALYSVFAEMNIKMLSISDTPFIHMVC---PPSPSSFTFLNFTQNVFTDSVFQGC-STLKRLQTLILQRNGLKNFFKVALM 398 (562)
T ss_dssp HHHHHHHTCCCSEEEEESSCCCCCCC---CSSCCCCCEEECCSSCCCTTTTTTC-CSCSSCCEEECCSSCCCBTTHHHHT
T ss_pred hhhhhhccCcceEEEccCCCcccccC---ccCCCCceEEECCCCccccchhhhh-cccCCCCEEECCCCCcCCcccchhh
Confidence 12457777777776654321 0233899999999999998666555 679999999999999997 45667
Q ss_pred hhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCch
Q 007693 371 MSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDV 450 (593)
Q Consensus 371 l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 450 (593)
+..+++|++|++++|.+.+..+.. .+..+++|++|++++|.+++..+..+. ++|++|++++|+++.+
T Consensus 399 ~~~l~~L~~L~l~~N~l~~~~~~~-----------~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~i 465 (562)
T 3a79_B 399 TKNMSSLETLDVSLNSLNSHAYDR-----------TCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSI 465 (562)
T ss_dssp TTTCTTCCEEECTTSCCBSCCSSC-----------CCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCC
T ss_pred hcCCCCCCEEECCCCcCCCccChh-----------hhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCccc
Confidence 889999999999999999844431 588899999999999999886666554 7899999999999975
Q ss_pred hHHhhhcCCCCcEEEecCcccCcccccCccCCCCCceEecCCCccCCHHHHHHHHh
Q 007693 451 SLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCK 506 (593)
Q Consensus 451 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 506 (593)
|..+..+++|+.|++++|+++++++..+..+++|+.|++++|++.|+|...++..
T Consensus 466 -p~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~ 520 (562)
T 3a79_B 466 -PKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLS 520 (562)
T ss_dssp -CTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHHHHHH
T ss_pred -ChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchHHHHH
Confidence 4455699999999999999998766668889999999999999999999988844
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.8e-40 Score=363.48 Aligned_cols=385 Identities=15% Similarity=0.155 Sum_probs=314.1
Q ss_pred CCccEEEcCCCCccCchHHHhhhCCCCCcEEec-CCCCCCChhhH-----------------------------------
Q 007693 90 RYLRSLNVADCRRVTSSALWALTGMTCLKELDL-SRCVKVTDAGM----------------------------------- 133 (593)
Q Consensus 90 ~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L-~~~~~l~~~~~----------------------------------- 133 (593)
.+++.|+|++|. +....+.+++++++|++|+| ++| .+.+..+
T Consensus 323 ~~V~~L~Ls~~~-L~G~ip~~l~~L~~L~~LdLss~N-~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~ 400 (876)
T 4ecn_A 323 GRVTGLSLAGFG-AKGRVPDAIGQLTELKVLSFGTHS-ETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL 400 (876)
T ss_dssp SCEEEEECTTTC-CEEEECGGGGGCTTCCEEESCCTT-HHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGS
T ss_pred CCEEEEECccCC-CCCcCchHHhccccceEeeecccc-cccccccccccccccccchhHHHHHHHhhhhhhhccCcchhh
Confidence 589999999988 77777788999999999999 665 3322100
Q ss_pred -----Hhh-----------cCCCCCcEEEccC--CCCChhHHHHhcCCCCCCEEEcCCCCCCh-----------------
Q 007693 134 -----KHL-----------LSISTLEKLWLSE--TGLTADGIALLSSLQNLSVLDLGGLPVTD----------------- 178 (593)
Q Consensus 134 -----~~l-----------~~~~~L~~L~L~~--~~~~~~~~~~l~~l~~L~~L~L~~n~l~~----------------- 178 (593)
..+ .....++.+.+.. |.+++ .|..|+++++|++|++++|.+++
T Consensus 401 s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g 479 (876)
T 4ecn_A 401 SDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQ 479 (876)
T ss_dssp CHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred hHHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccc
Confidence 000 0112233333333 56666 46679999999999999999998
Q ss_pred hhHHHhh--cCCCCCEEEccCCccCccchHhhcCCCCCCeeeccccC-CcC--C-----------CCCCCCcEEEcCCCc
Q 007693 179 LVLRSLQ--VLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTG-VTK--L-----------PNISSLECLNLSNCT 242 (593)
Q Consensus 179 ~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~--l-----------~~l~~L~~L~l~~n~ 242 (593)
..|..++ ++++|++|++++|.+.+..|..+..+++|+.|++++|. +++ + ..+++|+.|++++|.
T Consensus 480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp HTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred cCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 3777766 99999999999999999999999999999999999998 764 2 245699999999999
Q ss_pred ccchhc--ccCCCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcchh-hhcccCCC-ccEEEccCCCCChhHH
Q 007693 243 IDSILE--GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKA-LEHLDLSSSMIGDDSV 318 (593)
Q Consensus 243 l~~l~~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~l~~~~~-L~~L~L~~n~l~~~~~ 318 (593)
+..+|. .+..+++|+.|++++|.+..+| .+..+++|+.|++++|.+..+ ..+..+++ |++|++++|.++. .+
T Consensus 560 L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp---~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~-lp 635 (876)
T 4ecn_A 560 LEEFPASASLQKMVKLGLLDCVHNKVRHLE---AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IP 635 (876)
T ss_dssp CCBCCCHHHHTTCTTCCEEECTTSCCCBCC---CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCS-CC
T ss_pred CCccCChhhhhcCCCCCEEECCCCCcccch---hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCc-Cc
Confidence 999998 8889999999999999999776 456899999999999999977 56888898 9999999999984 33
Q ss_pred HHHHhcc-CCCcEEEcCCCCCCCchHHHH--Hc--CCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccc
Q 007693 319 EMVACVG-ANLRNLNLSNTRFSSAGVGIL--AG--HLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQ 393 (593)
Q Consensus 319 ~~~~~~~-~~L~~L~l~~n~l~~~~~~~~--~~--~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~ 393 (593)
..+.... ++|+.|++++|.+++..+... .+ .+++|+.|++++|.++..+...+..+++|+.|+|++|++...++.
T Consensus 636 ~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~ 715 (876)
T 4ecn_A 636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPEN 715 (876)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTT
T ss_pred hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChH
Confidence 3333221 349999999999987543211 01 345899999999999977666667899999999999999855444
Q ss_pred cccchhhhhhHHhhc-------cCCccCEEecCCCCcCCCcccccc--CCCCCcEEecCCCCCCchhHHhhhcCCCCcEE
Q 007693 394 VGAETDLVLSLTALQ-------NLNHLERLNLEQTQVSDATLFPLS--TFKELIHLSLRNASLTDVSLHQLSSLSKLTNL 464 (593)
Q Consensus 394 ~~~~~~~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 464 (593)
.+. ++++|+.|+|++|+++. +|..+. .+++|+.|+|++|++++ +|..+..+++|+.|
T Consensus 716 ------------~~~~~~~~l~nl~~L~~L~Ls~N~L~~-lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L 781 (876)
T 4ecn_A 716 ------------SLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAF 781 (876)
T ss_dssp ------------SSSCTTSCCTTGGGCCEEECCSSCCCC-CCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEE
T ss_pred ------------HhccccccccccCCccEEECCCCCCcc-chHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEE
Confidence 232 34499999999999995 677776 99999999999999999 57788999999999
Q ss_pred EecC------cccCcccccCccCCCCCceEecCCCcc
Q 007693 465 SIRD------AVLTNSGLGSFKPPRSLKLLDLHGGWL 495 (593)
Q Consensus 465 ~L~~------n~l~~~~~~~~~~~~~L~~L~l~~n~~ 495 (593)
+|++ |.+.+..|..+..+++|+.|+|++|++
T Consensus 782 ~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 782 GIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp ECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred ECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 9976 888888899999999999999999998
No 20
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.3e-41 Score=377.51 Aligned_cols=420 Identities=18% Similarity=0.151 Sum_probs=303.2
Q ss_pred cEEEecCCCCCChhHHHHHhcCCCccEEEcCCCCccCchHHHhhhCCCCCcEEecCCCCCCChhhHHhhcCCCCCcEEEc
Q 007693 68 EAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWL 147 (593)
Q Consensus 68 ~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~~~~L~~L~L 147 (593)
+..+.++++ ++. +|. -.++|++|+|++|. ++...+..+.++++|++|+|++|.......+..|.++++|++|+|
T Consensus 7 ~~~dcs~~~-L~~-vP~---lp~~l~~LdLs~N~-i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~L 80 (844)
T 3j0a_A 7 RIAFYRFCN-LTQ-VPQ---VLNTTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80 (844)
T ss_dssp EEEEESCCC-SSC-CCS---SCTTCCEEEEESCC-CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEEC
T ss_pred eEEEccCCC-CCC-CCC---CCCCcCEEECCCCc-CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEEC
Confidence 467777776 332 232 45799999999988 888777889999999999999996555555788999999999999
Q ss_pred cCCCCChhHHHHhcCCCCCCEEEcCCCCCChhhHHH--hhcCCCCCEEEccCCccCccch-HhhcCCCCCCeeeccccCC
Q 007693 148 SETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRS--LQVLTKLEYLDLWGSQVSNRGA-AVLKMFPRLSFLNLAWTGV 224 (593)
Q Consensus 148 ~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l 224 (593)
++|.+++..+..|+++++|++|++++|.+.+..+.. +.++++|++|++++|.+++..+ ..|+.+++|++|++++|.+
T Consensus 81 s~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 81 GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp TTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred CCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence 999999988889999999999999999998855554 8899999999999999987654 5799999999999999988
Q ss_pred cCCC-----CC--CCCcEEEcCCCcccc-hhcccCCCCC------cceEeccCccccchhh-HH----------------
Q 007693 225 TKLP-----NI--SSLECLNLSNCTIDS-ILEGNENKAP------LAKISLAGTTFINERE-AF---------------- 273 (593)
Q Consensus 225 ~~l~-----~l--~~L~~L~l~~n~l~~-l~~~~~~~~~------L~~L~l~~n~~~~~~~-~~---------------- 273 (593)
+.+. .+ ++|+.|++++|.+.. .+..+..+++ |+.|++++|.+..... .+
T Consensus 161 ~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~ 240 (844)
T 3j0a_A 161 FLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240 (844)
T ss_dssp CCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCS
T ss_pred CeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccc
Confidence 7643 23 678888888887764 3444434433 7888888775543111 00
Q ss_pred ------------------hhh--cCCCccEEeccCCCcchh--hhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEE
Q 007693 274 ------------------LYI--ETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNL 331 (593)
Q Consensus 274 ------------------~~~--~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L 331 (593)
.+. ..++|+.|++++|.+... ..+..+++|++|++++|.+++..+..+..+ ++|++|
T Consensus 241 ~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L 319 (844)
T 3j0a_A 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGL-DNLQVL 319 (844)
T ss_dssp SCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTC-SSCCEE
T ss_pred ccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCC-CCCCEE
Confidence 011 125678888888877766 456777888888888888777666666555 778888
Q ss_pred EcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccc------------------
Q 007693 332 NLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQ------------------ 393 (593)
Q Consensus 332 ~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~------------------ 393 (593)
++++|.+++..+..+ +.+++|++|++++|.+....+..|..+++|++|++++|.+.+....
T Consensus 320 ~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~ 398 (844)
T 3j0a_A 320 NLSYNLLGELYSSNF-YGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPK 398 (844)
T ss_dssp EEESCCCSCCCSCSC-SSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCC
T ss_pred ECCCCCCCccCHHHh-cCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccc
Confidence 888887776655544 5677788888888877776666677777788887777776643210
Q ss_pred cccc----------hhhhhhHHhhccCCccCEEecCCCCcCCCccc-cccCCCCCcEEecCCCCCCc-----hhHHhhhc
Q 007693 394 VGAE----------TDLVLSLTALQNLNHLERLNLEQTQVSDATLF-PLSTFKELIHLSLRNASLTD-----VSLHQLSS 457 (593)
Q Consensus 394 ~~~~----------~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~-----~~~~~l~~ 457 (593)
.... -..+.....+..+++|+.|+|++|.+++..+. .+..+++|+.|++++|.++. ..+..|.+
T Consensus 399 ~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~ 478 (844)
T 3j0a_A 399 INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEG 478 (844)
T ss_dssp CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSC
T ss_pred cccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcC
Confidence 0000 00011122355788888888888888764332 34456777777777777652 23345666
Q ss_pred CCCCcEEEecCcccCcccccCccCCCCCceEecCCCcc
Q 007693 458 LSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL 495 (593)
Q Consensus 458 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~ 495 (593)
+++|+.|+|++|.+++.++..|..+++|+.|+|++|++
T Consensus 479 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 516 (844)
T 3j0a_A 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516 (844)
T ss_dssp BCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCC
T ss_pred cccccEEECCCCcccccChhHccchhhhheeECCCCCC
Confidence 77777777777777777777777777777777777776
No 21
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=8.1e-40 Score=350.27 Aligned_cols=441 Identities=17% Similarity=0.152 Sum_probs=326.5
Q ss_pred CCccEEEecCCCCCChhHHHHHhcCCCccEEEcCCCCccCchHHHhhhCCCCCcEEecCCCCCCChhhHHhhcCCCCCcE
Q 007693 65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEK 144 (593)
Q Consensus 65 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~~~~L~~ 144 (593)
+...+.+.+++. ++ .+|..+ .++|++|+|++|+ ++...+.++.++++|++|++++| .++...+..|+++++|++
T Consensus 5 ~~~~~c~~~~~~-l~-~ip~~~--~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~ 78 (549)
T 2z81_A 5 DASGVCDGRSRS-FT-SIPSGL--TAAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEH 78 (549)
T ss_dssp CTTSEEECTTSC-CS-SCCSCC--CTTCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCE
T ss_pred CCCceEECCCCc-cc-cccccC--CCCccEEECcCCc-cCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCE
Confidence 444556777765 32 222222 3789999999998 88777778999999999999999 688877788999999999
Q ss_pred EEccCCCCChhHHHHhcCCCCCCEEEcCCCCCChh-hHHHhhcCCCCCEEEccCCc-cCccchHhhcCCCCCCeeecccc
Q 007693 145 LWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDL-VLRSLQVLTKLEYLDLWGSQ-VSNRGAAVLKMFPRLSFLNLAWT 222 (593)
Q Consensus 145 L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n 222 (593)
|++++|.+++..+..|+.+++|++|++++|.+.+. .+..++++++|++|++++|. +....+..+..+++|++|++++|
T Consensus 79 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n 158 (549)
T 2z81_A 79 LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158 (549)
T ss_dssp EECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred EECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC
Confidence 99999999999888899999999999999999863 45678899999999999998 45555578999999999999999
Q ss_pred CCcC-----CCCCCCCcEEEcCCCcccchhcccC-CCCCcceEeccCccccchh--hHHhhhcCCCccEEeccCCCcchh
Q 007693 223 GVTK-----LPNISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINER--EAFLYIETSLLSFLDVSNSSLSRF 294 (593)
Q Consensus 223 ~l~~-----l~~l~~L~~L~l~~n~l~~l~~~~~-~~~~L~~L~l~~n~~~~~~--~~~~~~~~~~L~~L~ls~n~l~~~ 294 (593)
.+++ +..+++|++|++++|.+..++..+. .+++|++|++++|.+.+.+ +......+++|+.|++++|.+++.
T Consensus 159 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 238 (549)
T 2z81_A 159 SLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE 238 (549)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHH
T ss_pred cccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchh
Confidence 8875 4578899999999999988887765 7999999999999988742 111223578999999999987653
Q ss_pred ------hhcccCCCccEEEccCCCCChh------------------------------H----HHHHHhccCCCcEEEcC
Q 007693 295 ------CFLTQMKALEHLDLSSSMIGDD------------------------------S----VEMVACVGANLRNLNLS 334 (593)
Q Consensus 295 ------~~l~~~~~L~~L~L~~n~l~~~------------------------------~----~~~~~~~~~~L~~L~l~ 334 (593)
..+..+++|+.+++++|.+.+. . ...+....++|++|+++
T Consensus 239 ~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~ 318 (549)
T 2z81_A 239 SFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVE 318 (549)
T ss_dssp HHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEE
T ss_pred HHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEec
Confidence 2234455556665555543221 0 00111222678888888
Q ss_pred CCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHH---hhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCC
Q 007693 335 NTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISY---MSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLN 411 (593)
Q Consensus 335 ~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~---l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~ 411 (593)
+|.++..+...+ +.+++|++|++++|.+++..+.. ++.+++|++|++++|++++..+. ...+..++
T Consensus 319 ~n~l~~ip~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----------~~~~~~l~ 387 (549)
T 2z81_A 319 NSKVFLVPCSFS-QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKT----------GEILLTLK 387 (549)
T ss_dssp SSCCCCCCHHHH-HHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHH----------HHHGGGCT
T ss_pred cCccccCCHHHH-hcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccc----------hhhhhcCC
Confidence 888876655443 46888999999999888866543 56788899999999888766431 01477888
Q ss_pred ccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcccccCccCCCCCceEecC
Q 007693 412 HLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLH 491 (593)
Q Consensus 412 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~ 491 (593)
+|++|++++|+++. +|..+..+++|++|++++|+++.+.. .+ .++|++|++++|++++.. ..+++|++|+++
T Consensus 388 ~L~~L~Ls~N~l~~-lp~~~~~~~~L~~L~Ls~N~l~~l~~-~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls 459 (549)
T 2z81_A 388 NLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGIRVVKT-CI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYIS 459 (549)
T ss_dssp TCCEEECTTCCCCC-CCSCCCCCTTCCEEECTTSCCSCCCT-TS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECC
T ss_pred CCCEEECCCCCCcc-CChhhcccccccEEECCCCCcccccc-hh--cCCceEEECCCCChhhhc----ccCChhcEEECC
Confidence 89999999998885 66778888888999998888876432 22 257888888888888753 456788888888
Q ss_pred CCccCCHHHHHHHHhhCCcEEEEeeeccccCCCCCCCCCCCCCcchhhhh
Q 007693 492 GGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRAS 541 (593)
Q Consensus 492 ~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 541 (593)
+|++..-+.. ..++.+ .......|.+.+..|..+..++.
T Consensus 460 ~N~l~~ip~~----~~l~~L-------~~L~Ls~N~l~~~~~~~~~~l~~ 498 (549)
T 2z81_A 460 RNKLKTLPDA----SLFPVL-------LVMKISRNQLKSVPDGIFDRLTS 498 (549)
T ss_dssp SSCCSSCCCG----GGCTTC-------CEEECCSSCCCCCCTTGGGGCTT
T ss_pred CCccCcCCCc----ccCccC-------CEEecCCCccCCcCHHHHhcCcc
Confidence 8887421111 112211 22234467777766766666544
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.1e-39 Score=335.75 Aligned_cols=362 Identities=18% Similarity=0.153 Sum_probs=263.1
Q ss_pred CCCcEEecCCCCCCChhhHHhhcCCCCCcEEEccCCCCCh-hHHHHhcCCCCCCEEEcCCCCCChhhHHHhhcCCCCCEE
Q 007693 115 TCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTA-DGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYL 193 (593)
Q Consensus 115 ~~L~~L~L~~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 193 (593)
++|++|++++| .++...+..++++++|++|++++|.+.+ ..+..|..+++|++|++++|.+.+..+..|+++++|++|
T Consensus 30 ~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLN-SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSS-CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred CccCEEEecCC-ccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 56777777777 4665556666677777777777776652 234456666777777777777666666666666777777
Q ss_pred EccCCccCccchHh--hcCCCCCCeeeccccCCcCCCCCCCCcEEEcCCCcccch-hcc-cCCCCCcceEeccCccccch
Q 007693 194 DLWGSQVSNRGAAV--LKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSI-LEG-NENKAPLAKISLAGTTFINE 269 (593)
Q Consensus 194 ~L~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~l~~n~l~~l-~~~-~~~~~~L~~L~l~~n~~~~~ 269 (593)
++++|.+++..+.. +..+++|+ +|++++|.+..+ |.. +..+++|++|++++|.+...
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~-------------------~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLE-------------------MLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCC-------------------EEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred eCCCCCCCccccCcccccCcccCC-------------------EEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 77776666544333 55555544 455555554443 222 33555566666666555543
Q ss_pred hhH-HhhhcCCCccEEeccCCCcchhh----------hcccCCCccEEEccCCCCChhHHHHHHhcc--CCCcEEEcCCC
Q 007693 270 REA-FLYIETSLLSFLDVSNSSLSRFC----------FLTQMKALEHLDLSSSMIGDDSVEMVACVG--ANLRNLNLSNT 336 (593)
Q Consensus 270 ~~~-~~~~~~~~L~~L~ls~n~l~~~~----------~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~--~~L~~L~l~~n 336 (593)
.+. +......+|+.|++++|.+.... .+..+++|++|++++|.+++..+..+.... ++|+.|++++|
T Consensus 170 ~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~ 249 (455)
T 3v47_A 170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249 (455)
T ss_dssp CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTC
T ss_pred ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccc
Confidence 321 11112256666777776665542 233557899999999999887777766542 78899999887
Q ss_pred CCCCchH----------HHHH-cCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHH
Q 007693 337 RFSSAGV----------GILA-GHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLT 405 (593)
Q Consensus 337 ~l~~~~~----------~~~~-~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~ 405 (593)
...+... ..+. -..++|++|++++|.+++..+..+..+++|++|++++|.+.+..+.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~------------ 317 (455)
T 3v47_A 250 YNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN------------ 317 (455)
T ss_dssp TTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT------------
T ss_pred cccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChh------------
Confidence 5443211 1110 1246899999999999998888899999999999999999988877
Q ss_pred hhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcccccCccCCCCC
Q 007693 406 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSL 485 (593)
Q Consensus 406 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L 485 (593)
.+..+++|++|++++|.+++..+..+..+++|++|++++|++++..|..|..+++|++|++++|++++.++..+..+++|
T Consensus 318 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 397 (455)
T 3v47_A 318 AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSL 397 (455)
T ss_dssp TTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred HhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcc
Confidence 68999999999999999999888899999999999999999999989999999999999999999999888888999999
Q ss_pred ceEecCCCccCCHHH-HHHHHhhC
Q 007693 486 KLLDLHGGWLLTEDA-ILQFCKMH 508 (593)
Q Consensus 486 ~~L~l~~n~~~~~~~-~~~~~~~~ 508 (593)
+.|++++|++.|++. +.++..|+
T Consensus 398 ~~L~l~~N~l~~~~~~~~~l~~~l 421 (455)
T 3v47_A 398 QKIWLHTNPWDCSCPRIDYLSRWL 421 (455)
T ss_dssp CEEECCSSCBCCCTTTTHHHHHHH
T ss_pred cEEEccCCCcccCCCcchHHHHHH
Confidence 999999999999876 45554443
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.3e-38 Score=332.63 Aligned_cols=390 Identities=16% Similarity=0.169 Sum_probs=278.6
Q ss_pred HhHhhhhcccccCchHHHHHHHHHHHHhcccChhhHhhhcCCccEEEecCCCCCChhHHHHHhcCCCccEEEcCCCCccC
Q 007693 25 QKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVT 104 (593)
Q Consensus 25 ~~~~~~~~~l~~lp~~l~~~~l~~l~~~~~~~p~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~ 104 (593)
+.++|++.+++.+|. ++ +++++|+|++|. +....+..++++++|++|+|++|....
T Consensus 13 ~~~~c~~~~l~~lp~-l~----------------------~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~~~~ 68 (455)
T 3v47_A 13 YNAICINRGLHQVPE-LP----------------------AHVNYVDLSLNS-IAELNETSFSRLQDLQFLKVEQQTPGL 68 (455)
T ss_dssp TEEECCSSCCSSCCC-CC----------------------TTCCEEECCSSC-CCEECTTTTSSCTTCCEEECCCCSTTC
T ss_pred cccCcCCCCcccCCC-CC----------------------CccCEEEecCCc-cCcCChhHhccCccccEEECcCCcccc
Confidence 346677777777775 22 358888888886 555556677888888888888877222
Q ss_pred chHHHhhhCCCCCcEEecCCCCCCChhhHHhhcCCCCCcEEEccCCCCChhHHHH--hcCCCCCCEEEcCCCCCChhhHH
Q 007693 105 SSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIAL--LSSLQNLSVLDLGGLPVTDLVLR 182 (593)
Q Consensus 105 ~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~~ 182 (593)
...+.++.++++|++|++++| .++...+..++++++|++|++++|.+++..+.. ++.+++|++|++++|.+.+..+.
T Consensus 69 ~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 147 (455)
T 3v47_A 69 VIRNNTFRGLSSLIILKLDYN-QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA 147 (455)
T ss_dssp EECTTTTTTCTTCCEEECTTC-TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCC
T ss_pred eECcccccccccCCEEeCCCC-ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcc
Confidence 444556778888888888888 566666677778888888888888887755554 77788888888888887776665
Q ss_pred H-hhcCCCCCEEEccCCccCccchHhhcCC--CCCCeeeccccCCcCCCCCCCCcEEEcCCCcccchhcccCCCCCcceE
Q 007693 183 S-LQVLTKLEYLDLWGSQVSNRGAAVLKMF--PRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKI 259 (593)
Q Consensus 183 ~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~l~~n~l~~l~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L 259 (593)
. +.++++|++|++++|.+++..+..+..+ .+|+.|++++|.+..++...- -......+..+++|++|
T Consensus 148 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~----------~~~~~~~~~~~~~L~~L 217 (455)
T 3v47_A 148 SFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWL----------GWEKCGNPFKNTSITTL 217 (455)
T ss_dssp GGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCT----------THHHHCCTTTTCEEEEE
T ss_pred cccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhc----------cccccccccccceeeeE
Confidence 4 6777888888888888777666666544 445555555554443321100 00011123345667777
Q ss_pred eccCccccchhhHHhh--hcCCCccEEeccCCCcchhhhcccCCCccEEEccCCCCChhHHHHHHh-ccCCCcEEEcCCC
Q 007693 260 SLAGTTFINEREAFLY--IETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVAC-VGANLRNLNLSNT 336 (593)
Q Consensus 260 ~l~~n~~~~~~~~~~~--~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~-~~~~L~~L~l~~n 336 (593)
++++|.+.+..+.... ...++|+.|++++|....... ..+.+.+.....+.. ..++|++|++++|
T Consensus 218 ~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n 285 (455)
T 3v47_A 218 DLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF------------GHTNFKDPDNFTFKGLEASGVKTCDLSKS 285 (455)
T ss_dssp ECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT------------TCCSSCCCCTTTTGGGTTSCCCEEECCSS
T ss_pred ecCCCcccccchhhhhccccccceeeEeecccccccccc------------chhhhccCcccccccccccCceEEEecCc
Confidence 7777776654332211 123677777777775443210 001111111111111 1268999999999
Q ss_pred CCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEE
Q 007693 337 RFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERL 416 (593)
Q Consensus 337 ~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 416 (593)
.+++..+..+ +.+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+. .+..+++|++|
T Consensus 286 ~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~------------~~~~l~~L~~L 352 (455)
T 3v47_A 286 KIFALLKSVF-SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSR------------MFENLDKLEVL 352 (455)
T ss_dssp CCCEECTTTT-TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG------------GGTTCTTCCEE
T ss_pred cccccchhhc-ccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChh------------HhcCcccCCEE
Confidence 9988776665 6789999999999999988888899999999999999999888777 68999999999
Q ss_pred ecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcc
Q 007693 417 NLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS 474 (593)
Q Consensus 417 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 474 (593)
++++|.+++..+..+..+++|++|++++|+++++.+..+..+++|+.|++++|++++.
T Consensus 353 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 353 DLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccC
Confidence 9999999998889999999999999999999998888889999999999999999864
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4e-39 Score=342.33 Aligned_cols=405 Identities=16% Similarity=0.128 Sum_probs=322.5
Q ss_pred hHHhHhhhhcccccCchHHHHHHHHHHHHhcccChhhHhhhcCCccEEEecCCCCCChhHHHHHhcCCCccEEEcCCCCc
Q 007693 23 SVQKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRR 102 (593)
Q Consensus 23 ~~~~~~~~~~~l~~lp~~l~~~~l~~l~~~~~~~p~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 102 (593)
.++.+++++..+..+++.... ..++|++|+|++|. +....+..|+.+++|++|+|++|+
T Consensus 22 ~L~~L~Ls~n~i~~~~~~~~~-------------------~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~- 80 (520)
T 2z7x_B 22 KTTILNISQNYISELWTSDIL-------------------SLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSHNK- 80 (520)
T ss_dssp TCSEEECCSSCCCCCCHHHHT-------------------TCTTCCEEECCSSC-CCEEEGGGGTTCTTCCEEECCSSC-
T ss_pred cccEEECCCCcccccChhhcc-------------------ccccccEEecCCCc-cCCcChHHhhcccCCCEEecCCCc-
Confidence 346677777777777643222 14779999999997 666667889999999999999998
Q ss_pred cCchHHHhhhCCCCCcEEecCCCCCCCh-hhHHhhcCCCCCcEEEccCCCCChhHHHHhcCCCCC--CEEEcCCCCC--C
Q 007693 103 VTSSALWALTGMTCLKELDLSRCVKVTD-AGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNL--SVLDLGGLPV--T 177 (593)
Q Consensus 103 i~~~~~~~l~~l~~L~~L~L~~~~~l~~-~~~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L--~~L~L~~n~l--~ 177 (593)
++.... . .+++|++|++++| .++. ..+..++++++|++|++++|.+++. .++.+++| ++|++++|.+ .
T Consensus 81 l~~lp~-~--~l~~L~~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 81 LVKISC-H--PTVNLKHLDLSFN-AFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCEEEC-C--CCCCCSEEECCSS-CCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGGTTSCEEEEEEEECTTTTS
T ss_pred eeecCc-c--ccCCccEEeccCC-ccccccchhhhccCCcceEEEecCcccchh---hccccccceeeEEEeeccccccc
Confidence 765332 2 8999999999999 5655 3457899999999999999999873 46778888 9999999998 6
Q ss_pred hhhHHHhhc--------------------------CCCCCEEEccCCc-------cCccchHhhcCCCCCCeeeccccCC
Q 007693 178 DLVLRSLQV--------------------------LTKLEYLDLWGSQ-------VSNRGAAVLKMFPRLSFLNLAWTGV 224 (593)
Q Consensus 178 ~~~~~~l~~--------------------------l~~L~~L~L~~n~-------l~~~~~~~l~~l~~L~~L~l~~n~l 224 (593)
+..|..+.. +++|+.|++++|. +.+..+ .+..+++|+.|++++|.+
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l 232 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET 232 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccccc
Confidence 665655554 5566777777665 444333 667778888888877766
Q ss_pred cCC-----C---CCCCCcEEEcCCCccc-chhccc-----CCCCCcceEeccCccccchhhH-Hh-hhcCCCccEEeccC
Q 007693 225 TKL-----P---NISSLECLNLSNCTID-SILEGN-----ENKAPLAKISLAGTTFINEREA-FL-YIETSLLSFLDVSN 288 (593)
Q Consensus 225 ~~l-----~---~l~~L~~L~l~~n~l~-~l~~~~-----~~~~~L~~L~l~~n~~~~~~~~-~~-~~~~~~L~~L~ls~ 288 (593)
+.- . ..++|++|++++|.+. .+|..+ ..++.|+.+++++|.+ .+|.. +. .....+|+.|++++
T Consensus 233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~ 311 (520)
T 2z7x_B 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSG 311 (520)
T ss_dssp EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEES
T ss_pred CHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCC
Confidence 531 1 2458999999999998 788888 7899999999999988 55522 11 11236799999999
Q ss_pred CCcchhhhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCch--HHHHHcCCCCCcEEEccCCCCCh-
Q 007693 289 SSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAG--VGILAGHLPNLEILSLSGTQIDD- 365 (593)
Q Consensus 289 n~l~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~~L~~L~l~~n~i~~- 365 (593)
|.+........+++|++|++++|.+++..+..+..+ ++|++|++++|.+++.+ +..+ +.+++|++|++++|.+++
T Consensus 312 n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~l~~~~~~~-~~l~~L~~L~Ls~N~l~~~ 389 (520)
T 2z7x_B 312 TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHL-TELETLILQMNQLKELSKIAEMT-TQMKSLQQLDISQNSVSYD 389 (520)
T ss_dssp SCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCC-SSCCEEECCSSCCCBHHHHHHHH-TTCTTCCEEECCSSCCBCC
T ss_pred CccccccchhhCCcccEEEeECCccChhhhhhhccC-CCCCEEEccCCccCccccchHHH-hhCCCCCEEECCCCcCCcc
Confidence 999887655789999999999999998777666665 89999999999999843 2444 789999999999999998
Q ss_pred HHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCC
Q 007693 366 YAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNA 445 (593)
Q Consensus 366 ~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 445 (593)
.....+..+++|++|++++|++++..+. .+. ++|++|++++|+++. +|..+..+++|++|++++|
T Consensus 390 l~~~~~~~l~~L~~L~Ls~N~l~~~~~~------------~l~--~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~L~~N 454 (520)
T 2z7x_B 390 EKKGDCSWTKSLLSLNMSSNILTDTIFR------------CLP--PRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASN 454 (520)
T ss_dssp GGGCSCCCCTTCCEEECCSSCCCGGGGG------------SCC--TTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSS
T ss_pred cccchhccCccCCEEECcCCCCCcchhh------------hhc--ccCCEEECCCCcccc-cchhhhcCCCCCEEECCCC
Confidence 5444577899999999999999876655 232 799999999999995 6777779999999999999
Q ss_pred CCCchhHHhhhcCCCCcEEEecCcccCcc
Q 007693 446 SLTDVSLHQLSSLSKLTNLSIRDAVLTNS 474 (593)
Q Consensus 446 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 474 (593)
+++.+.+..+..+++|+.|++++|+++..
T Consensus 455 ~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 455 QLKSVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cCCccCHHHhccCCcccEEECcCCCCccc
Confidence 99986655689999999999999998753
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4.1e-36 Score=314.05 Aligned_cols=342 Identities=22% Similarity=0.311 Sum_probs=200.4
Q ss_pred CCccEEEcCCCCccCchHHHhhhCCCCCcEEecCCCCCCChhhHHhhcCCCCCcEEEccCCCCChhHHHHhcCCCCCCEE
Q 007693 90 RYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVL 169 (593)
Q Consensus 90 ~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L 169 (593)
++|++|++++|. +.. +..+..+++|++|++++| .++...+ +.++++|++|++++|.+++..+ ++++++|++|
T Consensus 46 ~~l~~L~l~~~~-i~~--l~~~~~l~~L~~L~Ls~n-~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 46 DQVTTLQADRLG-IKS--IDGVEYLNNLTQINFSNN-QLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HTCCEEECCSSC-CCC--CTTGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred ccccEEecCCCC-Ccc--CcchhhhcCCCEEECCCC-ccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 456666666554 333 123555666666666666 3444322 5566666666666666665443 6666666666
Q ss_pred EcCCCCCChhhHHHhhcCCCCCEEEccCCccCccchHhhcCCCCCCeeeccccCCcC---CCCCCCCcEEEcCCCcccch
Q 007693 170 DLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTK---LPNISSLECLNLSNCTIDSI 246 (593)
Q Consensus 170 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~---l~~l~~L~~L~l~~n~l~~l 246 (593)
++++|.+.+..+ +..+++|++|++++|.+.+.. .+..+++|+.|++++ .+.. +..+++|++|++++|.+..+
T Consensus 118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~-~~~~~~~~~~l~~L~~L~l~~n~l~~~ 192 (466)
T 1o6v_A 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFGN-QVTDLKPLANLTTLERLDISSNKVSDI 192 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEEE-SCCCCGGGTTCTTCCEEECCSSCCCCC
T ss_pred ECCCCCCCCChH--HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecCC-cccCchhhccCCCCCEEECcCCcCCCC
Confidence 666666665433 666666666766666665432 355666666666642 2222 34556666666666666655
Q ss_pred hcccCCCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcchhhhcccCCCccEEEccCCCCChhHHHHHHhccC
Q 007693 247 LEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGA 326 (593)
Q Consensus 247 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 326 (593)
+ .+..+++|++|++++|.+.+.++ +..+++|+.|++++|.++.++.+..+++|++|++++|.+++..+ +..+ +
T Consensus 193 ~-~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l-~ 265 (466)
T 1o6v_A 193 S-VLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGL-T 265 (466)
T ss_dssp G-GGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTC-T
T ss_pred h-hhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcC-C
Confidence 3 24566666677776666665544 23566666666666666666566666666666666666665433 3332 5
Q ss_pred CCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHh
Q 007693 327 NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTA 406 (593)
Q Consensus 327 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~ 406 (593)
+|++|++++|.+++..+ ...+++|++|++++|.+++..+ +..+++|+.|++++|++.+..+
T Consensus 266 ~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-------------- 326 (466)
T 1o6v_A 266 KLTELKLGANQISNISP---LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-------------- 326 (466)
T ss_dssp TCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--------------
T ss_pred CCCEEECCCCccCcccc---ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--------------
Confidence 66666666666665544 2456666666666666655433 4556666666666666554432
Q ss_pred hccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcc
Q 007693 407 LQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS 474 (593)
Q Consensus 407 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 474 (593)
+..+++|++|++++|.+++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++++.
T Consensus 327 ~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 327 VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 34556666666666666553 345566666666666666666554 55666666666666666553
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=6.2e-36 Score=312.69 Aligned_cols=343 Identities=20% Similarity=0.297 Sum_probs=299.4
Q ss_pred CCCCCcEEecCCCCCCChhhHHhhcCCCCCcEEEccCCCCChhHHHHhcCCCCCCEEEcCCCCCChhhHHHhhcCCCCCE
Q 007693 113 GMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEY 192 (593)
Q Consensus 113 ~l~~L~~L~L~~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 192 (593)
.+++|++|+++++ .+.. ...+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+..+ +.++++|++
T Consensus 44 ~l~~l~~L~l~~~-~i~~--l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 44 DLDQVTTLQADRL-GIKS--IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHTCCEEECCSS-CCCC--CTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred HhccccEEecCCC-CCcc--CcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 3468999999998 4544 3457889999999999999998765 8999999999999999998766 899999999
Q ss_pred EEccCCccCccchHhhcCCCCCCeeeccccCCcCC---CCCCCCcEEEcCCCcccchhcccCCCCCcceEeccCccccch
Q 007693 193 LDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKL---PNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINE 269 (593)
Q Consensus 193 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l---~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~~~~~ 269 (593)
|++++|.+++..+ +..+++|++|++++|.++.+ ..+++|++|+++ +.+..+++ +..+++|++|++++|.+..+
T Consensus 117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~n~l~~~ 192 (466)
T 1o6v_A 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG-NQVTDLKP-LANLTTLERLDISSNKVSDI 192 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEECCSSCCCCC
T ss_pred EECCCCCCCCChH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecC-CcccCchh-hccCCCCCEEECcCCcCCCC
Confidence 9999999987654 89999999999999988764 478999999996 45555544 77999999999999999887
Q ss_pred hhHHhhhcCCCccEEeccCCCcchhhhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcC
Q 007693 270 REAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGH 349 (593)
Q Consensus 270 ~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 349 (593)
+. +..+++|++|++++|.+.+...+..+++|++|++++|.+++.. .+..+ ++|++|++++|.+++..+ ...
T Consensus 193 ~~---l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~--~l~~l-~~L~~L~l~~n~l~~~~~---~~~ 263 (466)
T 1o6v_A 193 SV---LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG--TLASL-TNLTDLDLANNQISNLAP---LSG 263 (466)
T ss_dssp GG---GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGGGC-TTCSEEECCSSCCCCCGG---GTT
T ss_pred hh---hccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccch--hhhcC-CCCCEEECCCCccccchh---hhc
Confidence 54 4588999999999999998877889999999999999998752 34444 899999999999998776 367
Q ss_pred CCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccc
Q 007693 350 LPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLF 429 (593)
Q Consensus 350 ~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 429 (593)
+++|++|++++|.+++..+ +..+++|+.|++++|++.+.. .+..+++|+.|++++|.+++..+
T Consensus 264 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~--------------~~~~l~~L~~L~L~~n~l~~~~~- 326 (466)
T 1o6v_A 264 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS--------------PISNLKNLTYLTLYFNNISDISP- 326 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCG--------------GGGGCTTCSEEECCSSCCSCCGG-
T ss_pred CCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCch--------------hhcCCCCCCEEECcCCcCCCchh-
Confidence 9999999999999998655 789999999999999998754 26789999999999999998655
Q ss_pred cccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcccccCccCCCCCceEecCCCccCC
Q 007693 430 PLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT 497 (593)
Q Consensus 430 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 497 (593)
+..+++|+.|++++|++++. ..+..+++|+.|++++|++++..+ +..+++|+.|++++|++..
T Consensus 327 -~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 327 -VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp -GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred -hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 78999999999999999986 378999999999999999999876 7889999999999999833
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4e-37 Score=318.76 Aligned_cols=370 Identities=18% Similarity=0.131 Sum_probs=271.9
Q ss_pred CCccEEEecCCCCCChhHHHHHhcCCCccEEEcCCCCccCchHHHhhhCCCC-------------CcEEecCCCCCCChh
Q 007693 65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTC-------------LKELDLSRCVKVTDA 131 (593)
Q Consensus 65 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~-------------L~~L~L~~~~~l~~~ 131 (593)
++|++|++++|. + +.+|..++++++|++|++++|. +....+..++.+++ +++|++++| .++..
T Consensus 11 ~~L~~L~l~~n~-l-~~iP~~i~~L~~L~~L~l~~n~-~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~l 86 (454)
T 1jl5_A 11 TFLQEPLRHSSN-L-TEMPVEAENVKSKTEYYNAWSE-WERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSL 86 (454)
T ss_dssp -------------------------CCHHHHHHHHHH-HHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSCC
T ss_pred ccchhhhcccCc-h-hhCChhHhcccchhhhhccCCc-ccccCCcccccchhcchhhhhhhhccCCCEEEecCC-ccccC
Confidence 679999999997 5 7889999999999999999987 55545555665554 599999999 45542
Q ss_pred hHHhhcCCCCCcEEEccCCCCChhHHHHhcCCCCCCEEEcCCCCCChhhHHHhhcCCCCCEEEccCCccCccchHhhcCC
Q 007693 132 GMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMF 211 (593)
Q Consensus 132 ~~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 211 (593)
. . -.++|++|++++|.+++.+ ...++|++|++++|.+.+... ..++|++|++++|.+++ .+ .++.+
T Consensus 87 p--~--~~~~L~~L~l~~n~l~~lp----~~~~~L~~L~l~~n~l~~l~~----~~~~L~~L~L~~n~l~~-lp-~~~~l 152 (454)
T 1jl5_A 87 P--E--LPPHLESLVASCNSLTELP----ELPQSLKSLLVDNNNLKALSD----LPPLLEYLGVSNNQLEK-LP-ELQNS 152 (454)
T ss_dssp C--S--CCTTCSEEECCSSCCSSCC----CCCTTCCEEECCSSCCSCCCS----CCTTCCEEECCSSCCSS-CC-CCTTC
T ss_pred C--C--CcCCCCEEEccCCcCCccc----cccCCCcEEECCCCccCcccC----CCCCCCEEECcCCCCCC-Cc-ccCCC
Confidence 1 1 2478999999999998743 235899999999999886321 12699999999999997 44 59999
Q ss_pred CCCCeeeccccCCcCCCC-CCCCcEEEcCCCcccchhcccCCCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCC
Q 007693 212 PRLSFLNLAWTGVTKLPN-ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS 290 (593)
Q Consensus 212 ~~L~~L~l~~n~l~~l~~-l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~ 290 (593)
++|++|++++|.+++++. .++|++|++++|.++++| .+..+++|++|++++|.+.+++.. .++|++|++++|.
T Consensus 153 ~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~-----~~~L~~L~l~~n~ 226 (454)
T 1jl5_A 153 SFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDL-----PLSLESIVAGNNI 226 (454)
T ss_dssp TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCC-----CTTCCEEECCSSC
T ss_pred CCCCEEECCCCcCcccCCCcccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCC-----cCcccEEECcCCc
Confidence 999999999999998874 569999999999999987 578999999999999999886652 3699999999999
Q ss_pred cchhhhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHH
Q 007693 291 LSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISY 370 (593)
Q Consensus 291 l~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~ 370 (593)
+..++.+..+++|++|++++|.+++.. ...++|++|++++|.+++.+. .+++|++|++++|.+++..
T Consensus 227 l~~lp~~~~l~~L~~L~l~~N~l~~l~-----~~~~~L~~L~l~~N~l~~l~~-----~~~~L~~L~ls~N~l~~l~--- 293 (454)
T 1jl5_A 227 LEELPELQNLPFLTTIYADNNLLKTLP-----DLPPSLEALNVRDNYLTDLPE-----LPQSLTFLDVSENIFSGLS--- 293 (454)
T ss_dssp CSSCCCCTTCTTCCEEECCSSCCSSCC-----SCCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSEES---
T ss_pred CCcccccCCCCCCCEEECCCCcCCccc-----ccccccCEEECCCCcccccCc-----ccCcCCEEECcCCccCccc---
Confidence 998877899999999999999998632 223899999999999988542 3589999999999998732
Q ss_pred hhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCch
Q 007693 371 MSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDV 450 (593)
Q Consensus 371 l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 450 (593)
...++|+.|++++|.+.+.... .++|++|++++|++++ +|.. +++|++|++++|+++.+
T Consensus 294 -~~~~~L~~L~l~~N~l~~i~~~----------------~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~l 352 (454)
T 1jl5_A 294 -ELPPNLYYLNASSNEIRSLCDL----------------PPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAEV 352 (454)
T ss_dssp -CCCTTCCEEECCSSCCSEECCC----------------CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC
T ss_pred -CcCCcCCEEECcCCcCCcccCC----------------cCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccccc
Confidence 1237999999999999863211 1589999999999998 4443 58999999999999975
Q ss_pred hHHhhhcCCCCcEEEecCcccCc--ccccCccCC-------------CCCceEecCCCccC
Q 007693 451 SLHQLSSLSKLTNLSIRDAVLTN--SGLGSFKPP-------------RSLKLLDLHGGWLL 496 (593)
Q Consensus 451 ~~~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~~-------------~~L~~L~l~~n~~~ 496 (593)
.. .+++|++|++++|++++ ..|..+..+ ++|+.|++++|++.
T Consensus 353 p~----~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~ 409 (454)
T 1jl5_A 353 PE----LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409 (454)
T ss_dssp CC----CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------
T ss_pred cc----hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCC
Confidence 43 57899999999999999 556677666 78899999998873
No 28
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=1.3e-35 Score=320.61 Aligned_cols=417 Identities=17% Similarity=0.154 Sum_probs=236.8
Q ss_pred cCCccEEEecCCCCCC-------------hh-HHHHHhcCCCccEEEcCCCCccCchHHHhhhC-CCC-CcEEecCCCCC
Q 007693 64 KHNAEAIELRGENSVD-------------AE-WMAYLGAFRYLRSLNVADCRRVTSSALWALTG-MTC-LKELDLSRCVK 127 (593)
Q Consensus 64 ~~~L~~L~L~~~~~~~-------------~~-~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~-l~~-L~~L~L~~~~~ 127 (593)
.++++.|+|+++.... .. +......+++|++|+|++|. +++..+..++. +++ |++|++++|..
T Consensus 72 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~L~~L~L~~~~~ 150 (592)
T 3ogk_B 72 FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMI-VSDLDLDRLAKARADDLETLKLDKCSG 150 (592)
T ss_dssp CTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHHGGGCCEEEEESCEE
T ss_pred CCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccE-ecHHHHHHHHHhccccCcEEECcCCCC
Confidence 4679999998864211 11 33344589999999999986 88877777775 455 99999999965
Q ss_pred CChhhHHhhc-CCCCCcEEEccCCCCChh----HHHHhcCCCCCCEEEcCCCCCC----hhhHHHhhcCCCCCEEEccCC
Q 007693 128 VTDAGMKHLL-SISTLEKLWLSETGLTAD----GIALLSSLQNLSVLDLGGLPVT----DLVLRSLQVLTKLEYLDLWGS 198 (593)
Q Consensus 128 l~~~~~~~l~-~~~~L~~L~L~~~~~~~~----~~~~l~~l~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~L~~n 198 (593)
++......+. ++++|++|++++|.+++. ....+..+++|++|++++|.+. +..+..+.++++|++|++++|
T Consensus 151 ~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 230 (592)
T 3ogk_B 151 FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF 230 (592)
T ss_dssp EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC
T ss_pred cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc
Confidence 5555554444 789999999999987554 3345568899999999999887 345556678999999999999
Q ss_pred ccCccchHhhcCCCCCCeeeccccCC--------cCCCCCCCCcEEEcCCCcccchhcccCCCCCcceEeccCccccchh
Q 007693 199 QVSNRGAAVLKMFPRLSFLNLAWTGV--------TKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINER 270 (593)
Q Consensus 199 ~l~~~~~~~l~~l~~L~~L~l~~n~l--------~~l~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~~~~~~ 270 (593)
.+.+ .+..+..+++|++|+++.... ..+..+++|+.|+++++....++..+..+++|++|++++|.+....
T Consensus 231 ~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~ 309 (592)
T 3ogk_B 231 EILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETED 309 (592)
T ss_dssp BGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHH
T ss_pred cHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHH
Confidence 8876 557788889999998875322 1344566677777766555555555555566666666665543322
Q ss_pred hHHhhhcCCCccEEeccCCCcchhhhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCC-----------CCCC
Q 007693 271 EAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSN-----------TRFS 339 (593)
Q Consensus 271 ~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~-----------n~l~ 339 (593)
.... +..+++|++|+++ +.+++.....+...+++|++|++++ +.++
T Consensus 310 ~~~~----------------------~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~ 366 (592)
T 3ogk_B 310 HCTL----------------------IQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS 366 (592)
T ss_dssp HHHH----------------------HTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCC
T ss_pred HHHH----------------------HHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccC
Confidence 2111 2344455555554 3333333333333334555555552 3444
Q ss_pred CchHHHHHcCCCCCcEEEccCCCCChHHHHHhhc-CCCCCEEEee----CCccCccccccccchhhhhhHHhhccCCccC
Q 007693 340 SAGVGILAGHLPNLEILSLSGTQIDDYAISYMSM-MPSLKFIDIS----NTDIKGFIQQVGAETDLVLSLTALQNLNHLE 414 (593)
Q Consensus 340 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~-~~~L~~L~Ls----~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~ 414 (593)
+.+...+...+++|++|+++.|.+++..+..++. +++|+.|+++ .|.+++.+.+. .+ ...+.++++|+
T Consensus 367 ~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~-----~~--~~~~~~~~~L~ 439 (592)
T 3ogk_B 367 QRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN-----GV--RSLLIGCKKLR 439 (592)
T ss_dssp HHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH-----HH--HHHHHHCTTCC
T ss_pred HHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH-----HH--HHHHHhCCCCC
Confidence 4444333344555555555555555544444442 5555555554 23333321100 00 00133455555
Q ss_pred EEecCCCC--cCCCcccccc-CCCCCcEEecCCCCCCchh-HHhhhcCCCCcEEEecCcccCcccccCc-cCCCCCceEe
Q 007693 415 RLNLEQTQ--VSDATLFPLS-TFKELIHLSLRNASLTDVS-LHQLSSLSKLTNLSIRDAVLTNSGLGSF-KPPRSLKLLD 489 (593)
Q Consensus 415 ~L~L~~n~--l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~~~~~L~~L~ 489 (593)
+|++++|. +++..+..+. .+++|++|++++|++++.. +..+.++++|++|++++|.+++.....+ ..+++|++|+
T Consensus 440 ~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 519 (592)
T 3ogk_B 440 RFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLW 519 (592)
T ss_dssp EEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEE
T ss_pred EEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeE
Confidence 55554322 3332222222 2455555555555555422 2233445555555555555544322222 2345555555
Q ss_pred cCCCccCCHHHHHHHHhhCCcEEE
Q 007693 490 LHGGWLLTEDAILQFCKMHPRIEV 513 (593)
Q Consensus 490 l~~n~~~~~~~~~~~~~~~~~l~~ 513 (593)
+++|++ ++.++..+...+|.+.+
T Consensus 520 ls~n~i-t~~~~~~l~~~~p~l~~ 542 (592)
T 3ogk_B 520 VQGYRA-SMTGQDLMQMARPYWNI 542 (592)
T ss_dssp EESCBC-CTTCTTGGGGCCTTEEE
T ss_pred CcCCcC-CHHHHHHHHHhCCCcEE
Confidence 555553 44444444444554443
No 29
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=1.1e-35 Score=311.14 Aligned_cols=405 Identities=21% Similarity=0.227 Sum_probs=270.9
Q ss_pred CCccEEEecCCCCCChhHHHHHhcCCCccEEEcCCCCccCchH----HHhhhCCCCCcEEecCCCCCCChhhHHhhc-CC
Q 007693 65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSA----LWALTGMTCLKELDLSRCVKVTDAGMKHLL-SI 139 (593)
Q Consensus 65 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~----~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~-~~ 139 (593)
+++++|+|+++......+...+..+++|++|+|++|. +++.. ...+..+++|++|++++| .+++..+..+. .+
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTT
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHHH
Confidence 5689999999873334455558889999999999988 77643 344667899999999998 57776665554 34
Q ss_pred C----CCcEEEccCCCCChh----HHHHhcCCCCCCEEEcCCCCCChhhHHHhhc-----CCCCCEEEccCCccCccchH
Q 007693 140 S----TLEKLWLSETGLTAD----GIALLSSLQNLSVLDLGGLPVTDLVLRSLQV-----LTKLEYLDLWGSQVSNRGAA 206 (593)
Q Consensus 140 ~----~L~~L~L~~~~~~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~-----l~~L~~L~L~~n~l~~~~~~ 206 (593)
+ +|++|++++|.++.. .+..+..+++|++|++++|.+.+..+..+.. .++|++|++++|.+++....
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 4 699999999988853 3667788888888888888887766655532 45688888888877765433
Q ss_pred hhcCCCCCCeeeccccCCcCCCCCCCCcEEEcCCCcccchh-cccCCCCCcceEeccCccccchhhHHhhhcCCCccEEe
Q 007693 207 VLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSIL-EGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLD 285 (593)
Q Consensus 207 ~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~l~~n~l~~l~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 285 (593)
.+... +..+++|++|++++|.+.... ..+. . ......++|++|+
T Consensus 161 ~l~~~---------------l~~~~~L~~L~L~~n~i~~~~~~~l~-------------------~-~l~~~~~~L~~L~ 205 (461)
T 1z7x_W 161 PLASV---------------LRAKPDFKELTVSNNDINEAGVRVLC-------------------Q-GLKDSPCQLEALK 205 (461)
T ss_dssp HHHHH---------------HHHCTTCCEEECCSSBCHHHHHHHHH-------------------H-HHHHSCCCCCEEE
T ss_pred HHHHH---------------HhhCCCCCEEECcCCCcchHHHHHHH-------------------H-HHhcCCCCceEEE
Confidence 22110 011234444444444443211 0000 0 0001234555555
Q ss_pred ccCCCcchh------hhcccCCCccEEEccCCCCChhHHHHHHh----ccCCCcEEEcCCCCCCCchHHHH---HcCCCC
Q 007693 286 VSNSSLSRF------CFLTQMKALEHLDLSSSMIGDDSVEMVAC----VGANLRNLNLSNTRFSSAGVGIL---AGHLPN 352 (593)
Q Consensus 286 ls~n~l~~~------~~l~~~~~L~~L~L~~n~l~~~~~~~~~~----~~~~L~~L~l~~n~l~~~~~~~~---~~~~~~ 352 (593)
+++|.++.. ..+..+++|++|++++|.+++.....+.. .+++|++|++++|.+++.+...+ ...+++
T Consensus 206 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 285 (461)
T 1z7x_W 206 LESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES 285 (461)
T ss_dssp CTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTT
T ss_pred ccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCC
Confidence 555555541 34556778888888888877665544432 23788888888888877543222 245788
Q ss_pred CcEEEccCCCCChHHHHHhhc-----CCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCc
Q 007693 353 LEILSLSGTQIDDYAISYMSM-----MPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT 427 (593)
Q Consensus 353 L~~L~l~~n~i~~~~~~~l~~-----~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 427 (593)
|++|++++|.+++..+..+.. .++|++|++++|.+++.... .-...+..+++|++|++++|.+++..
T Consensus 286 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~--------~l~~~l~~~~~L~~L~Ls~n~i~~~~ 357 (461)
T 1z7x_W 286 LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCS--------HFSSVLAQNRFLLELQISNNRLEDAG 357 (461)
T ss_dssp CCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH--------HHHHHHHHCSSCCEEECCSSBCHHHH
T ss_pred cceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHH--------HHHHHHhhCCCccEEEccCCcccccc
Confidence 888888888887766655542 36889999998888754211 00125677889999999999888755
Q ss_pred cccccC-----CCCCcEEecCCCCCCc----hhHHhhhcCCCCcEEEecCcccCcccccCccC-----CCCCceEecCCC
Q 007693 428 LFPLST-----FKELIHLSLRNASLTD----VSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKP-----PRSLKLLDLHGG 493 (593)
Q Consensus 428 ~~~~~~-----l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-----~~~L~~L~l~~n 493 (593)
+..+.. .++|++|++++|++++ ..+..+..+++|++|++++|++++.+...+.. ..+|+.|++.++
T Consensus 358 ~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~ 437 (461)
T 1z7x_W 358 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDI 437 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTC
T ss_pred HHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeeccc
Confidence 544432 6789999999999996 66778888999999999999998865544432 346888888888
Q ss_pred ccCC--HHHHHHHHhhCCcEEEE
Q 007693 494 WLLT--EDAILQFCKMHPRIEVW 514 (593)
Q Consensus 494 ~~~~--~~~~~~~~~~~~~l~~~ 514 (593)
.+.. ...+..+....|++.+.
T Consensus 438 ~~~~~~~~~l~~l~~~~p~l~i~ 460 (461)
T 1z7x_W 438 YWSEEMEDRLQALEKDKPSLRVI 460 (461)
T ss_dssp CCCHHHHHHHHHHHHHCTTSEEE
T ss_pred ccCHHHHHHHHHHhccCCCcEee
Confidence 7632 34455667777877653
No 30
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3e-36 Score=322.90 Aligned_cols=401 Identities=16% Similarity=0.136 Sum_probs=309.0
Q ss_pred CCccEEEecCCCCCChhHHHHHhcCCCccEEEcCCCCccCchHHHhhhCCCCCcEEecCCCCCCChhhHHhhcCCCCCcE
Q 007693 65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEK 144 (593)
Q Consensus 65 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~~~~L~~ 144 (593)
...+++++++++ ++. +|..+ .++|++|+|++|. ++...+.++.++++|++|++++| .++...+..|.++++|++
T Consensus 31 ~~~~~l~ls~~~-L~~-ip~~~--~~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~ 104 (562)
T 3a79_B 31 ELESMVDYSNRN-LTH-VPKDL--PPRTKALSLSQNS-ISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEY 104 (562)
T ss_dssp --CCEEECTTSC-CCS-CCTTS--CTTCCEEECCSSC-CCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCE
T ss_pred CCCcEEEcCCCC-Ccc-CCCCC--CCCcCEEECCCCC-ccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCE
Confidence 446899999997 443 34333 3799999999998 88777778999999999999999 788877888999999999
Q ss_pred EEccCCCCChhHHHHhcCCCCCCEEEcCCCCCChh-hHHHhhcCCCCCEEEccCCccCccchHhhcCCCCC--Ceeeccc
Q 007693 145 LWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDL-VLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRL--SFLNLAW 221 (593)
Q Consensus 145 L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~l~~ 221 (593)
|++++|.++..+.. .+++|++|++++|.+.+. .|..|+++++|++|++++|.+++.. +..+++| ++|++++
T Consensus 105 L~Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~~ 178 (562)
T 3a79_B 105 LDVSHNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLDL 178 (562)
T ss_dssp EECTTSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEEE
T ss_pred EECCCCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEEEeec
Confidence 99999999865433 799999999999999874 3578999999999999999988643 4445555 9999999
Q ss_pred cCC--cCCC--CCCCCc----EEEcCCCcccc-hhcc-cCCCCCcceEeccCccc-----cchhhHHhhhcCCCccEEec
Q 007693 222 TGV--TKLP--NISSLE----CLNLSNCTIDS-ILEG-NENKAPLAKISLAGTTF-----INEREAFLYIETSLLSFLDV 286 (593)
Q Consensus 222 n~l--~~l~--~l~~L~----~L~l~~n~l~~-l~~~-~~~~~~L~~L~l~~n~~-----~~~~~~~~~~~~~~L~~L~l 286 (593)
|.+ +... .+..+. .+++++|.+.. ++.. +..+++|+.+++++|.. ..... .+..+++|+.+++
T Consensus 179 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~--~l~~l~~L~~L~L 256 (562)
T 3a79_B 179 VSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLS--ELTRGPTLLNVTL 256 (562)
T ss_dssp SSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHH--HHHSCSSCEEEEE
T ss_pred ccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHH--HHhccCcceEEEe
Confidence 988 4322 122222 55778887764 3332 33788999999999852 22222 2457889999998
Q ss_pred cCCCcchh-----hhcccCCCccEEEccCCCCChhHHH-------------------------------HHHhccCCCcE
Q 007693 287 SNSSLSRF-----CFLTQMKALEHLDLSSSMIGDDSVE-------------------------------MVACVGANLRN 330 (593)
Q Consensus 287 s~n~l~~~-----~~l~~~~~L~~L~L~~n~l~~~~~~-------------------------------~~~~~~~~L~~ 330 (593)
+++.+.+. ......++|++|++++|.+++..+. .+... .+|++
T Consensus 257 ~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~-~~L~~ 335 (562)
T 3a79_B 257 QHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAE-MNIKM 335 (562)
T ss_dssp EEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHT-CCCSE
T ss_pred cCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhcc-CcceE
Confidence 88876543 2233456999999999887743221 11111 56888
Q ss_pred EEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccC
Q 007693 331 LNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNL 410 (593)
Q Consensus 331 L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l 410 (593)
|++++|.+..... .+.+++|++|++++|.+++..+..+..+++|++|++++|++.+..+. ...+..+
T Consensus 336 L~l~~n~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----------~~~~~~l 402 (562)
T 3a79_B 336 LSISDTPFIHMVC---PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKV----------ALMTKNM 402 (562)
T ss_dssp EEEESSCCCCCCC---CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHH----------HHTTTTC
T ss_pred EEccCCCcccccC---ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccc----------hhhhcCC
Confidence 8888888765432 14689999999999999998888889999999999999999875421 0158899
Q ss_pred CccCEEecCCCCcCC-CccccccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcccccCccCCCCCceEe
Q 007693 411 NHLERLNLEQTQVSD-ATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLD 489 (593)
Q Consensus 411 ~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 489 (593)
++|++|++++|.+++ .....+..+++|++|++++|++++..+..+. ++|+.|++++|+++.++ ..+..+++|+.|+
T Consensus 403 ~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip-~~~~~l~~L~~L~ 479 (562)
T 3a79_B 403 SSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIP-KDVTHLQALQELN 479 (562)
T ss_dssp TTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCC-TTTTSSCCCSEEE
T ss_pred CCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccC-hhhcCCCCCCEEE
Confidence 999999999999998 4445588999999999999999986654443 79999999999999764 4445899999999
Q ss_pred cCCCccC
Q 007693 490 LHGGWLL 496 (593)
Q Consensus 490 l~~n~~~ 496 (593)
+++|++.
T Consensus 480 L~~N~l~ 486 (562)
T 3a79_B 480 VASNQLK 486 (562)
T ss_dssp CCSSCCC
T ss_pred CCCCCCC
Confidence 9999984
No 31
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=3e-35 Score=318.02 Aligned_cols=426 Identities=19% Similarity=0.205 Sum_probs=309.8
Q ss_pred cCCccEEEecCCCCCCh--------------hHHHHHhcCCCccEEEcCCCCccCchHHHhhh-CCCCCcEEecCCCCCC
Q 007693 64 KHNAEAIELRGENSVDA--------------EWMAYLGAFRYLRSLNVADCRRVTSSALWALT-GMTCLKELDLSRCVKV 128 (593)
Q Consensus 64 ~~~L~~L~L~~~~~~~~--------------~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~-~l~~L~~L~L~~~~~l 128 (593)
.+++++|+++++..... .+......+++|++|+|++|. +++..+..+. .+++|++|++++|..+
T Consensus 65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~ 143 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGF 143 (594)
T ss_dssp CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence 36688888888752211 123334577888888888887 7777777776 6888888888888656
Q ss_pred ChhhHHhhc-CCCCCcEEEccCCCCChhHHHHhc----CCCCCCEEEcCCCC--CChhhHHH-hhcCCCCCEEEccCCcc
Q 007693 129 TDAGMKHLL-SISTLEKLWLSETGLTADGIALLS----SLQNLSVLDLGGLP--VTDLVLRS-LQVLTKLEYLDLWGSQV 200 (593)
Q Consensus 129 ~~~~~~~l~-~~~~L~~L~L~~~~~~~~~~~~l~----~l~~L~~L~L~~n~--l~~~~~~~-l~~l~~L~~L~L~~n~l 200 (593)
+......+. ++++|++|++++|.+++..+..+. .+++|++|++++|. +....... +..+++|++|++++|..
T Consensus 144 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~ 223 (594)
T 2p1m_B 144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP 223 (594)
T ss_dssp EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC
T ss_pred CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc
Confidence 665555554 788888888888876654433333 56788888888875 44332222 35678888888888732
Q ss_pred CccchHhhcCCCCCCeeeccccCCcCCCCCCCCcEEEcCCCcccchhcccCCCCCcceE-eccCccccchhhHHhhhcCC
Q 007693 201 SNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKI-SLAGTTFINEREAFLYIETS 279 (593)
Q Consensus 201 ~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L-~l~~n~~~~~~~~~~~~~~~ 279 (593)
.+..+..+..+++|++|+++.+.. ++..+.+..++..+..+++|+.| .+.+.....++.. ...++
T Consensus 224 ~~~l~~~~~~~~~L~~L~l~~~~~------------~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~--~~~~~ 289 (594)
T 2p1m_B 224 LEKLATLLQRAPQLEELGTGGYTA------------EVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAV--YSVCS 289 (594)
T ss_dssp HHHHHHHHHHCTTCSEEECSBCCC------------CCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGG--HHHHT
T ss_pred HHHHHHHHhcCCcceEcccccccC------------ccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHH--HHhhC
Confidence 223566667777777777654421 23445566677777788888888 4554443333332 23678
Q ss_pred CccEEeccCCCcchh---hhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEc---------CCCCCCCchHHHHH
Q 007693 280 LLSFLDVSNSSLSRF---CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNL---------SNTRFSSAGVGILA 347 (593)
Q Consensus 280 ~L~~L~ls~n~l~~~---~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l---------~~n~l~~~~~~~~~ 347 (593)
+|++|++++|.++.. ..+..+++|++|++++| +++.....+...+++|++|++ ..+.+++.....+.
T Consensus 290 ~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~ 368 (594)
T 2p1m_B 290 RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS 368 (594)
T ss_dssp TCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHH
T ss_pred CCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHH
Confidence 999999999997654 34568899999999998 776667666665699999999 34578877777776
Q ss_pred cCCCCCcEEEccCCCCChHHHHHhh-cCCCCCEEEee--C----CccCccccccccchhhhhhHHhhccCCccCEEecCC
Q 007693 348 GHLPNLEILSLSGTQIDDYAISYMS-MMPSLKFIDIS--N----TDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQ 420 (593)
Q Consensus 348 ~~~~~L~~L~l~~n~i~~~~~~~l~-~~~~L~~L~Ls--~----n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 420 (593)
..+++|++|.+..|.+++.....+. .+++|+.|+++ + +.+++.+.+ ..+. ..+..+++|++|++++
T Consensus 369 ~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~-----~~~~--~l~~~~~~L~~L~L~~ 441 (594)
T 2p1m_B 369 MGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLD-----IGFG--AIVEHCKDLRRLSLSG 441 (594)
T ss_dssp HHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTH-----HHHH--HHHHHCTTCCEEECCS
T ss_pred HhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchh-----hHHH--HHHhhCCCccEEeecC
Confidence 6799999999999999988877776 69999999999 3 445432211 0000 1367889999999988
Q ss_pred CCcCCCccccccC-CCCCcEEecCCCCCCchhHHhh-hcCCCCcEEEecCcccCccccc-CccCCCCCceEecCCCccCC
Q 007693 421 TQVSDATLFPLST-FKELIHLSLRNASLTDVSLHQL-SSLSKLTNLSIRDAVLTNSGLG-SFKPPRSLKLLDLHGGWLLT 497 (593)
Q Consensus 421 n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~L~~L~l~~n~~~~ 497 (593)
.+++..+..+.. +++|+.|++++|.+++..+..+ .++++|+.|++++|.+++.+.. .+..+++|+.|++++|++ +
T Consensus 442 -~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~-~ 519 (594)
T 2p1m_B 442 -LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV-S 519 (594)
T ss_dssp -SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC-B
T ss_pred -cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC-C
Confidence 777765556655 8999999999999998777666 7799999999999999776555 344589999999999998 8
Q ss_pred HHHHHHHHhhCCcEEEE
Q 007693 498 EDAILQFCKMHPRIEVW 514 (593)
Q Consensus 498 ~~~~~~~~~~~~~l~~~ 514 (593)
..++..+...+|.+.+.
T Consensus 520 ~~~~~~l~~~lp~l~i~ 536 (594)
T 2p1m_B 520 FGACKLLGQKMPKLNVE 536 (594)
T ss_dssp HHHHHHHHHHCTTEEEE
T ss_pred HHHHHHHHHhCCCCEEE
Confidence 88899998889988765
No 32
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.7e-35 Score=319.15 Aligned_cols=384 Identities=20% Similarity=0.199 Sum_probs=286.5
Q ss_pred CCccEEEcCCCCccCchHHHhhhCCCCCcEEecCCCCCCChhhHHhhcCCCCCcEEEccCCCCChhHHHHhcCCCCCCEE
Q 007693 90 RYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVL 169 (593)
Q Consensus 90 ~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L 169 (593)
+.+++|+|++|+ |+.....+|.++++|++|+|++| .++...+.+|.++++|++|+|++|++++.++.+|+++++|++|
T Consensus 52 ~~~~~LdLs~N~-i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 52 FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 129 (635)
T ss_dssp TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEE
T ss_pred cCCCEEEeeCCC-CCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEE
Confidence 379999999998 88887888999999999999999 6888777889999999999999999999888889999999999
Q ss_pred EcCCCCCChhhHHHhhcCCCCCEEEccCCccCcc-chHhhcCCCCCCeeeccccCCcCCC--------CCC-CCcEEEcC
Q 007693 170 DLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNR-GAAVLKMFPRLSFLNLAWTGVTKLP--------NIS-SLECLNLS 239 (593)
Q Consensus 170 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~l~--------~l~-~L~~L~l~ 239 (593)
++++|++.+..+..|+++++|++|++++|.++.. .+..+..+++|++|++++|.++.++ +++ ....++++
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls 209 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 209 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcc
Confidence 9999999998877899999999999999999764 5678899999999999999987643 222 34467778
Q ss_pred CCcccchhcccCCCCCcceEeccCcccc----------------------------------------------------
Q 007693 240 NCTIDSILEGNENKAPLAKISLAGTTFI---------------------------------------------------- 267 (593)
Q Consensus 240 ~n~l~~l~~~~~~~~~L~~L~l~~n~~~---------------------------------------------------- 267 (593)
.|.+..++........++.+++.+|...
T Consensus 210 ~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~ 289 (635)
T 4g8a_A 210 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 289 (635)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEE
T ss_pred cCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhh
Confidence 7777766555544444444444433211
Q ss_pred ------------------------------chhhHHhhhcCCCccEEeccCCCcchhhhcccCCCccEEEccCCCCChhH
Q 007693 268 ------------------------------NEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDS 317 (593)
Q Consensus 268 ------------------------------~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~L~~n~l~~~~ 317 (593)
.+. .+.....++.|++.+|.+..+.. ..++.|+.+++..|.+....
T Consensus 290 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~-~~l~~L~~l~l~~n~~~~~~ 365 (635)
T 4g8a_A 290 YLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK---DFSYNFGWQHLELVNCKFGQFPT-LKLKSLKRLTFTSNKGGNAF 365 (635)
T ss_dssp CCCSCEEECTTTTGGGTTCSEEEEESCEEEECG---GGGSCCCCSEEEEESCEESSCCC-CBCTTCCEEEEESCCSCCBC
T ss_pred hhcccccchhhhhhhhccccccccccccccccc---ccccchhhhhhhcccccccCcCc-ccchhhhhcccccccCCCCc
Confidence 110 11123456666777766655532 35678999999988765432
Q ss_pred HHHHHhccCCCcEEEcCCCCCCCch--HHHHHcCCCCCcEEEccCCCCCh-----------------------H-HHHHh
Q 007693 318 VEMVACVGANLRNLNLSNTRFSSAG--VGILAGHLPNLEILSLSGTQIDD-----------------------Y-AISYM 371 (593)
Q Consensus 318 ~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~~L~~L~l~~n~i~~-----------------------~-~~~~l 371 (593)
. ...+ ++|+.+++++|.+.... +... ..+.+|+.+++..+.+.. . ....+
T Consensus 366 ~--~~~l-~~L~~L~ls~n~l~~~~~~~~~~-~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~ 441 (635)
T 4g8a_A 366 S--EVDL-PSLEFLDLSRNGLSFKGCCSQSD-FGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 441 (635)
T ss_dssp C--CCBC-TTCCEEECCSSCCBEEEECCHHH-HSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTT
T ss_pred c--cccc-cccccchhhccccccccccccch-hhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccc
Confidence 1 1223 78999999988775422 2222 234555555555543322 1 11234
Q ss_pred hcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcC-CCccccccCCCCCcEEecCCCCCCch
Q 007693 372 SMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVS-DATLFPLSTFKELIHLSLRNASLTDV 450 (593)
Q Consensus 372 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~ 450 (593)
..+++++.++++.|.+.+..+. .+..+++|+.|++++|.+. ...|..|..+++|++|+|++|+++++
T Consensus 442 ~~l~~l~~l~ls~n~l~~~~~~------------~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l 509 (635)
T 4g8a_A 442 LSLRNLIYLDISHTHTRVAFNG------------IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 509 (635)
T ss_dssp TTCTTCCEEECTTSCCEECCTT------------TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred cccccccccccccccccccccc------------ccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCc
Confidence 4556666666666666655555 5778888899999888644 45677788888999999999999988
Q ss_pred hHHhhhcCCCCcEEEecCcccCcccccCccCCCCCceEecCCCcc
Q 007693 451 SLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL 495 (593)
Q Consensus 451 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~ 495 (593)
.|..|.++++|++|+|++|+|+++.+..|..+++|+.|+|++|++
T Consensus 510 ~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l 554 (635)
T 4g8a_A 510 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 554 (635)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCC
T ss_pred ChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcC
Confidence 888888899999999999999988888888889999999999987
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.3e-33 Score=283.88 Aligned_cols=305 Identities=20% Similarity=0.300 Sum_probs=225.0
Q ss_pred cCCCCCcEEEccCCCCChhHHHHhcCCCCCCEEEcCCCCCChhhHHHhhcCCCCCEEEccCCccCccchHhhcCCCCCCe
Q 007693 137 LSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSF 216 (593)
Q Consensus 137 ~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 216 (593)
..+++|++|+++++.+.... .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++. ..+..++
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~--~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~---- 110 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLT---- 110 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCT----
T ss_pred hhcccccEEEEeCCccccch--hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCC----
Confidence 34577777777777776542 36677777777777777766544 66777777777777766643 2344444
Q ss_pred eeccccCCcCCCCCCCCcEEEcCCCcccchhcccCCCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcchhhh
Q 007693 217 LNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCF 296 (593)
Q Consensus 217 L~l~~n~l~~l~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~ 296 (593)
+|++|++++|.+..++. +..+++|++|++++|......+. +..+++|++|++++|.+.....
T Consensus 111 ---------------~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~ 172 (347)
T 4fmz_A 111 ---------------NLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTP 172 (347)
T ss_dssp ---------------TCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGG
T ss_pred ---------------cCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchh
Confidence 45555555555554444 44566666666666644333332 3466777777777777776666
Q ss_pred cccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCC
Q 007693 297 LTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPS 376 (593)
Q Consensus 297 l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~ 376 (593)
+..+++|++|++++|.+++... +... ++|+.|++++|.+++... .+.+++|++|++++|.+++..+ +..+++
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~--~~~l-~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n~l~~~~~--~~~l~~ 244 (347)
T 4fmz_A 173 IANLTDLYSLSLNYNQIEDISP--LASL-TSLHYFTAYVNQITDITP---VANMTRLNSLKIGNNKITDLSP--LANLSQ 244 (347)
T ss_dssp GGGCTTCSEEECTTSCCCCCGG--GGGC-TTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGG--GTTCTT
T ss_pred hccCCCCCEEEccCCccccccc--ccCC-CccceeecccCCCCCCch---hhcCCcCCEEEccCCccCCCcc--hhcCCC
Confidence 7777888888888887776543 3444 788888888888887665 3568889999999998887654 778899
Q ss_pred CCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhh
Q 007693 377 LKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLS 456 (593)
Q Consensus 377 L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 456 (593)
|++|++++|.+.+. + .+..+++|++|++++|.+++. ..+..+++|+.|++++|++++..+..+.
T Consensus 245 L~~L~l~~n~l~~~-~-------------~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 308 (347)
T 4fmz_A 245 LTWLEIGTNQISDI-N-------------AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIG 308 (347)
T ss_dssp CCEEECCSSCCCCC-G-------------GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHH
T ss_pred CCEEECCCCccCCC-h-------------hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhh
Confidence 99999999988764 2 478889999999999999885 4578899999999999999999999999
Q ss_pred cCCCCcEEEecCcccCcccccCccCCCCCceEecCCCcc
Q 007693 457 SLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL 495 (593)
Q Consensus 457 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~ 495 (593)
.+++|+.|++++|++++..+ +..+++|++|++++|++
T Consensus 309 ~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 309 GLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp TCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred ccccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence 99999999999999998766 77889999999999987
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=8.2e-35 Score=305.59 Aligned_cols=219 Identities=19% Similarity=0.156 Sum_probs=179.5
Q ss_pred cCCCccEEeccCCCcchh--hhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCc
Q 007693 277 ETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLE 354 (593)
Q Consensus 277 ~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~ 354 (593)
.+++|++|++++|.+..+ ..+..+++|++|++++|.+++.....+..+ ++|+.|++++|.+.+.....+ ..+++|+
T Consensus 126 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~l~~n~i~~~~~~~~-~~l~~L~ 203 (477)
T 2id5_A 126 DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHL-HGLIVLRLRHLNINAIRDYSF-KRLYRLK 203 (477)
T ss_dssp TCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTC-TTCCEEEEESCCCCEECTTCS-CSCTTCC
T ss_pred ccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhccc-CCCcEEeCCCCcCcEeChhhc-ccCcccc
Confidence 444555555555554444 345667778888888887777666666665 788888888888877665554 5688999
Q ss_pred EEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCC
Q 007693 355 ILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTF 434 (593)
Q Consensus 355 ~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 434 (593)
+|++++|...+..+.......+|+.|++++|.+.+.++. .+..+++|+.|+|++|.+++..+..|..+
T Consensus 204 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 271 (477)
T 2id5_A 204 VLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYL------------AVRHLVYLRFLNLSYNPISTIEGSMLHEL 271 (477)
T ss_dssp EEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHH------------HHTTCTTCCEEECCSSCCCEECTTSCTTC
T ss_pred eeeCCCCccccccCcccccCccccEEECcCCcccccCHH------------HhcCccccCeeECCCCcCCccChhhcccc
Confidence 999999876655544445566999999999999877655 68999999999999999999888889999
Q ss_pred CCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcccccCccCCCCCceEecCCCccCCHHHHHHHHhhCC
Q 007693 435 KELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHP 509 (593)
Q Consensus 435 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 509 (593)
++|+.|+|++|+++++.+..|..+++|+.|++++|+++++.+..|..+++|+.|++++|++.|+|.+.|+..+..
T Consensus 272 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~ 346 (477)
T 2id5_A 272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRW 346 (477)
T ss_dssp TTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTT
T ss_pred ccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhh
Confidence 999999999999999989999999999999999999999988889999999999999999999999999877654
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.1e-34 Score=297.36 Aligned_cols=262 Identities=19% Similarity=0.183 Sum_probs=131.8
Q ss_pred hcCCCccEEEcCCCCccCchHHHhhhCCCCCcEEecCCCCCCChhhHHhhcCCCCCcEEEccCCCCChhHHHHhcCCCCC
Q 007693 87 GAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNL 166 (593)
Q Consensus 87 ~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L 166 (593)
+++++|++|++++|. +++. ..+..+++|++|++++| .++.. .++.+++|++|++++|.+++.. ++.+++|
T Consensus 39 ~~l~~L~~L~Ls~n~-l~~~--~~l~~l~~L~~L~Ls~n-~l~~~---~~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L 108 (457)
T 3bz5_A 39 EQLATLTSLDCHNSS-ITDM--TGIEKLTGLTKLICTSN-NITTL---DLSQNTNLTYLACDSNKLTNLD---VTPLTKL 108 (457)
T ss_dssp HHHTTCCEEECCSSC-CCCC--TTGGGCTTCSEEECCSS-CCSCC---CCTTCTTCSEEECCSSCCSCCC---CTTCTTC
T ss_pred hHcCCCCEEEccCCC-cccC--hhhcccCCCCEEEccCC-cCCeE---ccccCCCCCEEECcCCCCceee---cCCCCcC
Confidence 344455555555444 3332 13444555555555555 23332 1444555555555555554431 4455555
Q ss_pred CEEEcCCCCCChhhHHHhhcCCCCCEEEccCCccCccchHhhcCCCCCCeeeccccC-CcC--CCCCCCCcEEEcCCCcc
Q 007693 167 SVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTG-VTK--LPNISSLECLNLSNCTI 243 (593)
Q Consensus 167 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~--l~~l~~L~~L~l~~n~l 243 (593)
++|++++|.+.+. + ++.+++|++|++++|.+++. .++.+++|++|++++|. +.. +..+++|++|++++|.+
T Consensus 109 ~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l 182 (457)
T 3bz5_A 109 TYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKI 182 (457)
T ss_dssp CEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCC
T ss_pred CEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCcc
Confidence 5555555555443 1 44555555555555555443 14445555555555552 222 33455566666666666
Q ss_pred cchhcccCCCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcchhhhcccCCCccEEEccCCCCChhHHHHHHh
Q 007693 244 DSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVAC 323 (593)
Q Consensus 244 ~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~ 323 (593)
+.+| +..+++|++|++++|.+..++ +..+++|++|++++|.+++++ +..+++|++|++++|.+++..+ ..
T Consensus 183 ~~l~--l~~l~~L~~L~l~~N~l~~~~----l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N~l~~~~~---~~ 252 (457)
T 3bz5_A 183 TELD--VSQNKLLNRLNCDTNNITKLD----LNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNPLTELDV---ST 252 (457)
T ss_dssp CCCC--CTTCTTCCEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCCC---TT
T ss_pred ceec--cccCCCCCEEECcCCcCCeec----cccCCCCCEEECcCCcccccC-ccccCCCCEEEeeCCcCCCcCH---HH
Confidence 5554 445566666666666655542 335556666666666665554 5555666666666666555321 11
Q ss_pred ccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCcccc
Q 007693 324 VGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQ 392 (593)
Q Consensus 324 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~ 392 (593)
+++|+.|++++| +|+.|++++|.+.+..| ++.+++|+.|++++|...+.++
T Consensus 253 -l~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 253 -LSKLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp -CTTCCEEECTTC---------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEE
T ss_pred -CCCCCEEeccCC---------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceec
Confidence 255555555443 24444555555443332 3455666666666665544443
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.6e-33 Score=283.06 Aligned_cols=307 Identities=23% Similarity=0.294 Sum_probs=236.7
Q ss_pred hhCCCCCcEEecCCCCCCChhhHHhhcCCCCCcEEEccCCCCChhHHHHhcCCCCCCEEEcCCCCCChhhHHHhhcCCCC
Q 007693 111 LTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKL 190 (593)
Q Consensus 111 l~~l~~L~~L~L~~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 190 (593)
+..+++|++|++++| .+.. ...+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+. ..+..+++|
T Consensus 40 ~~~l~~L~~L~l~~~-~i~~--~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L 112 (347)
T 4fmz_A 40 QEELESITKLVVAGE-KVAS--IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNL 112 (347)
T ss_dssp HHHHTTCSEEECCSS-CCCC--CTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred chhcccccEEEEeCC-cccc--chhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcC
Confidence 456789999999999 4554 3458889999999999999998655 89999999999999999875 368999999
Q ss_pred CEEEccCCccCccchHhhcCCCCCCeeeccccCCcCCCCCCCCcEEEcCCCcccchhcccCCCCCcceEeccCccccchh
Q 007693 191 EYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINER 270 (593)
Q Consensus 191 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~~~~~~ 270 (593)
++|++++|.+.+..+ +..+++|+.|++++| .....++.+..+++|++|++++|.+...+
T Consensus 113 ~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n-------------------~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 171 (347)
T 4fmz_A 113 RELYLNEDNISDISP--LANLTKMYSLNLGAN-------------------HNLSDLSPLSNMTGLNYLTVTESKVKDVT 171 (347)
T ss_dssp SEEECTTSCCCCCGG--GTTCTTCCEEECTTC-------------------TTCCCCGGGTTCTTCCEEECCSSCCCCCG
T ss_pred CEEECcCCcccCchh--hccCCceeEEECCCC-------------------CCcccccchhhCCCCcEEEecCCCcCCch
Confidence 999999999886544 666666666665555 22222223445556666666666655544
Q ss_pred hHHhhhcCCCccEEeccCCCcchhhhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCC
Q 007693 271 EAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHL 350 (593)
Q Consensus 271 ~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 350 (593)
. +..+++|++|++++|.+.++..+..+++|++|++++|.+++..+ +..+ ++|++|++++|.+++... ...+
T Consensus 172 ~---~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~-~~L~~L~l~~n~l~~~~~---~~~l 242 (347)
T 4fmz_A 172 P---IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANM-TRLNSLKIGNNKITDLSP---LANL 242 (347)
T ss_dssp G---GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGC-TTCCEEECCSSCCCCCGG---GTTC
T ss_pred h---hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch--hhcC-CcCCEEEccCCccCCCcc---hhcC
Confidence 4 34667777777777777777667777888888888888776544 3443 788888888888887765 3678
Q ss_pred CCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCcccc
Q 007693 351 PNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFP 430 (593)
Q Consensus 351 ~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 430 (593)
++|++|++++|.+++. ..+..+++|++|++++|.+.+. + .+..+++|++|++++|.+++..+..
T Consensus 243 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-------------~~~~l~~L~~L~L~~n~l~~~~~~~ 306 (347)
T 4fmz_A 243 SQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-S-------------VLNNLSQLNSLFLNNNQLGNEDMEV 306 (347)
T ss_dssp TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-G-------------GGGGCTTCSEEECCSSCCCGGGHHH
T ss_pred CCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC-h-------------hhcCCCCCCEEECcCCcCCCcChhH
Confidence 8899999999888875 3577889999999999988765 2 4788899999999999998888888
Q ss_pred ccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccC
Q 007693 431 LSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLT 472 (593)
Q Consensus 431 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 472 (593)
+..+++|++|++++|++++..| +..+++|+.|++++|.|+
T Consensus 307 l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 307 IGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred hhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 8899999999999999998766 888999999999999886
No 37
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=4.4e-34 Score=308.71 Aligned_cols=408 Identities=17% Similarity=0.186 Sum_probs=270.9
Q ss_pred cEEEecCCCCCChhHHHHHhcCCCccEEEcCCCCccCch-------------HHHhhh-CCCCCcEEecCCCCCCChhhH
Q 007693 68 EAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSS-------------ALWALT-GMTCLKELDLSRCVKVTDAGM 133 (593)
Q Consensus 68 ~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~-------------~~~~l~-~l~~L~~L~L~~~~~l~~~~~ 133 (593)
+.+.+..+ ........+.++++|++|+|++|..+.+. .+..+. .+++|++|+|++| .+++..+
T Consensus 53 ~~l~~~~~--~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~ 129 (592)
T 3ogk_B 53 EHVTMALC--YTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDL 129 (592)
T ss_dssp CEEEESCG--GGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHH
T ss_pred cEEEEeec--cccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHH
Confidence 34555444 22334566778899999999887633211 122222 5666666666666 4555555
Q ss_pred HhhcC-CC-CCcEEEccCCC-CChhHHH-HhcCCCCCCEEEcCCCCCChh----hHHHhhcCCCCCEEEccCCccCccc-
Q 007693 134 KHLLS-IS-TLEKLWLSETG-LTADGIA-LLSSLQNLSVLDLGGLPVTDL----VLRSLQVLTKLEYLDLWGSQVSNRG- 204 (593)
Q Consensus 134 ~~l~~-~~-~L~~L~L~~~~-~~~~~~~-~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~- 204 (593)
..++. ++ +|++|++++|. ++..... ....+++|++|++++|.+.+. .+..+..+++|++|++++|.+++..
T Consensus 130 ~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~ 209 (592)
T 3ogk_B 130 DRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISP 209 (592)
T ss_dssp HHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCH
T ss_pred HHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCH
Confidence 55544 22 36666666653 2222221 223556666666666654433 2233345556666666655554221
Q ss_pred ---hHhhcCCCCCCeeeccccCCcCCCCCCCCcEEEcCCCcccchhcccCCCCCcceEeccCccccc--hhhHHhhhcCC
Q 007693 205 ---AAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFIN--EREAFLYIETS 279 (593)
Q Consensus 205 ---~~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~ 279 (593)
+..+. ++++|++|++++|.+..++..+..+++|++|++++..... ......+..++
T Consensus 210 ~~l~~~~~-------------------~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~ 270 (592)
T 3ogk_B 210 KDLETIAR-------------------NCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR 270 (592)
T ss_dssp HHHHHHHH-------------------HCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred HHHHHHHh-------------------hCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence 22222 3456666666666666666666677777777776532211 11111234667
Q ss_pred CccEEeccCCCcchh-hhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEc
Q 007693 280 LLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSL 358 (593)
Q Consensus 280 ~L~~L~ls~n~l~~~-~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l 358 (593)
+|+.++++++....+ ..+..+++|++|++++|.+++.....+...+++|++|+++ +.+.+.....+...+++|++|++
T Consensus 271 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L 349 (592)
T 3ogk_B 271 KLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRI 349 (592)
T ss_dssp TCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEE
T ss_pred cccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEe
Confidence 888888887655555 4566789999999999999887775555555999999999 66777777777678999999999
Q ss_pred c-----------CCCCChHHHHH-hhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhc-cCCccCEEecC----CC
Q 007693 359 S-----------GTQIDDYAISY-MSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQ-NLNHLERLNLE----QT 421 (593)
Q Consensus 359 ~-----------~n~i~~~~~~~-l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~----~n 421 (593)
+ .+.+++..... ...+++|++|+++.|.+++.... .+. .+++|++|+++ .|
T Consensus 350 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~------------~l~~~~~~L~~L~l~~~~~~n 417 (592)
T 3ogk_B 350 ERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLE------------SIGTYLKNLCDFRLVLLDREE 417 (592)
T ss_dssp ECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHH------------HHHHHCCSCCEEEEEECSCCS
T ss_pred ecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHH------------HHHhhCCCCcEEEEeecCCCc
Confidence 9 46788765544 44799999999999998875544 454 48999999996 66
Q ss_pred CcCCC-----ccccccCCCCCcEEecCCCC--CCchhHHhhhc-CCCCcEEEecCcccCccccc-CccCCCCCceEecCC
Q 007693 422 QVSDA-----TLFPLSTFKELIHLSLRNAS--LTDVSLHQLSS-LSKLTNLSIRDAVLTNSGLG-SFKPPRSLKLLDLHG 492 (593)
Q Consensus 422 ~l~~~-----~~~~~~~l~~L~~L~L~~n~--l~~~~~~~l~~-l~~L~~L~L~~n~l~~~~~~-~~~~~~~L~~L~l~~ 492 (593)
.+++. ++..+..+++|++|++++|. +++..+..+.. +++|+.|++++|++++.... .+..+++|++|++++
T Consensus 418 ~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~ 497 (592)
T 3ogk_B 418 RITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRG 497 (592)
T ss_dssp CCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEES
T ss_pred cccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccC
Confidence 78763 33336679999999998654 88877766654 89999999999999885443 446689999999999
Q ss_pred CccCCHHHHHHHHhhCCcE
Q 007693 493 GWLLTEDAILQFCKMHPRI 511 (593)
Q Consensus 493 n~~~~~~~~~~~~~~~~~l 511 (593)
|++ ++..+.++...++.+
T Consensus 498 n~l-~~~~~~~~~~~l~~L 515 (592)
T 3ogk_B 498 CCF-SERAIAAAVTKLPSL 515 (592)
T ss_dssp CCC-BHHHHHHHHHHCSSC
T ss_pred CCC-cHHHHHHHHHhcCcc
Confidence 996 888888776655544
No 38
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.3e-34 Score=299.94 Aligned_cols=384 Identities=18% Similarity=0.198 Sum_probs=155.2
Q ss_pred HHhHhhhhcccccCchHHHHHHHHHHHHhcccChhhHhhhcCCccEEEecCCCCCChhHHHHHhcCCC------------
Q 007693 24 VQKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRY------------ 91 (593)
Q Consensus 24 ~~~~~~~~~~l~~lp~~l~~~~l~~l~~~~~~~p~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~------------ 91 (593)
++.+.++...++.+|..+.. .++|++|++++|. +.+..+..++.+++
T Consensus 13 L~~L~l~~n~l~~iP~~i~~--------------------L~~L~~L~l~~n~-~~~~~p~~~~~l~~L~~l~l~~c~~~ 71 (454)
T 1jl5_A 13 LQEPLRHSSNLTEMPVEAEN--------------------VKSKTEYYNAWSE-WERNAPPGNGEQREMAVSRLRDCLDR 71 (454)
T ss_dssp -----------------------------------------CCHHHHHHHHHH-HHHTSCTTSCCCHHHHHHHHHHHHHH
T ss_pred chhhhcccCchhhCChhHhc--------------------ccchhhhhccCCc-ccccCCcccccchhcchhhhhhhhcc
Confidence 46667777778888876655 2334444444443 22222222332222
Q ss_pred -ccEEEcCCCCccCchHHHhhhCCCCCcEEecCCCCCCChhhHHhhcCCCCCcEEEccCCCCChhHHHHhcCC-CCCCEE
Q 007693 92 -LRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSL-QNLSVL 169 (593)
Q Consensus 92 -L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~l-~~L~~L 169 (593)
+++|++++|. ++.... -.++|++|++++| .++.. +. ..++|++|++++|.+++.. .. ++|++|
T Consensus 72 ~l~~L~l~~~~-l~~lp~----~~~~L~~L~l~~n-~l~~l-p~---~~~~L~~L~l~~n~l~~l~-----~~~~~L~~L 136 (454)
T 1jl5_A 72 QAHELELNNLG-LSSLPE----LPPHLESLVASCN-SLTEL-PE---LPQSLKSLLVDNNNLKALS-----DLPPLLEYL 136 (454)
T ss_dssp TCSEEECTTSC-CSCCCS----CCTTCSEEECCSS-CCSSC-CC---CCTTCCEEECCSSCCSCCC-----SCCTTCCEE
T ss_pred CCCEEEecCCc-cccCCC----CcCCCCEEEccCC-cCCcc-cc---ccCCCcEEECCCCccCccc-----CCCCCCCEE
Confidence 3555555554 332110 1245555555555 33321 11 1245555555555554321 11 355555
Q ss_pred EcCCCCCChhhHHHhhcCCCCCEEEccCCccCccchHhhcCCCCCCeeeccccCCcCCC---CCCCCcEEEcCCCcccch
Q 007693 170 DLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP---NISSLECLNLSNCTIDSI 246 (593)
Q Consensus 170 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~---~l~~L~~L~l~~n~l~~l 246 (593)
++++|.+.+ .| .++.+++|++|++++|.+++. +. ..++|++|++++|.++.++ .+++|++|++++|.++++
T Consensus 137 ~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~l-p~---~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l 210 (454)
T 1jl5_A 137 GVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKL 210 (454)
T ss_dssp ECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSC
T ss_pred ECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCccc-CC---CcccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcC
Confidence 555555554 22 355555555555555555432 11 1235555555555554433 345555555555555544
Q ss_pred hcccCCCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcchhhhcccCCCccEEEccCCCCChhHHHHHHhccC
Q 007693 247 LEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGA 326 (593)
Q Consensus 247 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 326 (593)
|... ++|++|++++|.+..++. +..+++|++|++++|.+++++. .+++|++|++++|.+++.. ...+
T Consensus 211 ~~~~---~~L~~L~l~~n~l~~lp~---~~~l~~L~~L~l~~N~l~~l~~--~~~~L~~L~l~~N~l~~l~-----~~~~ 277 (454)
T 1jl5_A 211 PDLP---LSLESIVAGNNILEELPE---LQNLPFLTTIYADNNLLKTLPD--LPPSLEALNVRDNYLTDLP-----ELPQ 277 (454)
T ss_dssp CCCC---TTCCEEECCSSCCSSCCC---CTTCTTCCEEECCSSCCSSCCS--CCTTCCEEECCSSCCSCCC-----CCCT
T ss_pred CCCc---CcccEEECcCCcCCcccc---cCCCCCCCEEECCCCcCCcccc--cccccCEEECCCCcccccC-----cccC
Confidence 4322 355555555555554442 2355555555555555554432 2255555666555555421 1124
Q ss_pred CCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcC-CCCCEEEeeCCccCccccccccchhhhhhHH
Q 007693 327 NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMM-PSLKFIDISNTDIKGFIQQVGAETDLVLSLT 405 (593)
Q Consensus 327 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~-~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~ 405 (593)
+|++|++++|.+++.+. ..++|++|++++|.+++. ..+ ++|++|++++|++.+. |.
T Consensus 278 ~L~~L~ls~N~l~~l~~-----~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~l-p~------------ 334 (454)
T 1jl5_A 278 SLTFLDVSENIFSGLSE-----LPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIEL-PA------------ 334 (454)
T ss_dssp TCCEEECCSSCCSEESC-----CCTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSCC-CC------------
T ss_pred cCCEEECcCCccCcccC-----cCCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCccccc-cc------------
Confidence 55666666665554321 124566666666655541 222 3566666666665542 22
Q ss_pred hhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCc--hhHHhhhcC-------------CCCcEEEecCcc
Q 007693 406 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTD--VSLHQLSSL-------------SKLTNLSIRDAV 470 (593)
Q Consensus 406 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l-------------~~L~~L~L~~n~ 470 (593)
.+++|++|++++|.+++ +|. .+++|++|++++|++++ ..|..+..+ ++|+.|++++|+
T Consensus 335 ---~~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 335 ---LPPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp ---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------
T ss_pred ---cCCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence 13556666666666654 232 24556666666666655 344444444 899999999999
Q ss_pred cCcccccCccCCCCCceEecCCCccC
Q 007693 471 LTNSGLGSFKPPRSLKLLDLHGGWLL 496 (593)
Q Consensus 471 l~~~~~~~~~~~~~L~~L~l~~n~~~ 496 (593)
+++.+ .+ .++++.|.+.+|.+.
T Consensus 408 l~~~~--~i--P~sl~~L~~~~~~~~ 429 (454)
T 1jl5_A 408 LREFP--DI--PESVEDLRMNSERVV 429 (454)
T ss_dssp --------------------------
T ss_pred CCccc--cc--hhhHhheeCcCcccC
Confidence 99741 11 256788888888873
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.1e-33 Score=288.95 Aligned_cols=316 Identities=17% Similarity=0.238 Sum_probs=231.2
Q ss_pred CCCCcEEEccCCCCChhHHHHhcCCCCCCEEEcCCCCCChhhHHHhhcCCCCCEEEccCCccCccchHhhcCCCCCCeee
Q 007693 139 ISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLN 218 (593)
Q Consensus 139 ~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 218 (593)
++++++|+++++.++..+...+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 56788888888877777666677788888888888888777667777788888888888877777666676666666666
Q ss_pred ccccCCcCCCCCCCCcEEEcCCCcccchhccc-CCCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcchhhhc
Q 007693 219 LAWTGVTKLPNISSLECLNLSNCTIDSILEGN-ENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFL 297 (593)
Q Consensus 219 l~~n~l~~l~~l~~L~~L~l~~n~l~~l~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l 297 (593)
+++|.++. +|..+ ..+++|++|++++|.+..+++. .+..+++|++|++++|.++.. .+
T Consensus 124 L~~n~l~~-------------------l~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~-~~ 182 (390)
T 3o6n_A 124 LERNDLSS-------------------LPRGIFHNTPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSNRLTHV-DL 182 (390)
T ss_dssp CCSSCCCC-------------------CCTTTTTTCTTCCEEECCSSCCCBCCTT-TTSSCTTCCEEECCSSCCSBC-CG
T ss_pred CCCCccCc-------------------CCHHHhcCCCCCcEEECCCCccCccChh-hccCCCCCCEEECCCCcCCcc-cc
Confidence 66665554 33332 2344444444444444433322 123445555555555555444 23
Q ss_pred ccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCC
Q 007693 298 TQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSL 377 (593)
Q Consensus 298 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L 377 (593)
..+++|++|++++|.+++.. ..++|++|++++|.++..+. ...++|++|++++|.+++. ..+..+++|
T Consensus 183 ~~l~~L~~L~l~~n~l~~~~------~~~~L~~L~l~~n~l~~~~~----~~~~~L~~L~l~~n~l~~~--~~l~~l~~L 250 (390)
T 3o6n_A 183 SLIPSLFHANVSYNLLSTLA------IPIAVEELDASHNSINVVRG----PVNVELTILKLQHNNLTDT--AWLLNYPGL 250 (390)
T ss_dssp GGCTTCSEEECCSSCCSEEE------CCSSCSEEECCSSCCCEEEC----CCCSSCCEEECCSSCCCCC--GGGGGCTTC
T ss_pred ccccccceeecccccccccC------CCCcceEEECCCCeeeeccc----cccccccEEECCCCCCccc--HHHcCCCCc
Confidence 45667777777777666431 12678888888888776643 3357899999999998875 467889999
Q ss_pred CEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhc
Q 007693 378 KFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSS 457 (593)
Q Consensus 378 ~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 457 (593)
++|++++|.+.+..+. .+..+++|++|++++|++++ ++..+..+++|++|++++|+++++ |..+..
T Consensus 251 ~~L~Ls~n~l~~~~~~------------~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~ 316 (390)
T 3o6n_A 251 VEVDLSYNELEKIMYH------------PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHV-ERNQPQ 316 (390)
T ss_dssp SEEECCSSCCCEEESG------------GGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCCC-GGGHHH
T ss_pred cEEECCCCcCCCcChh------------HccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcceec-Cccccc
Confidence 9999999999988777 68999999999999999988 456678899999999999999975 456788
Q ss_pred CCCCcEEEecCcccCcccccCccCCCCCceEecCCCccCCHHHHHHH
Q 007693 458 LSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQF 504 (593)
Q Consensus 458 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 504 (593)
+++|+.|++++|++++.. +..+++|+.|++++|++.|++...++
T Consensus 317 l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~~~~~~ 360 (390)
T 3o6n_A 317 FDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRALF 360 (390)
T ss_dssp HTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHHHHT
T ss_pred cCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccchhHHHHH
Confidence 999999999999999874 56679999999999999776544433
No 40
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=2.1e-33 Score=293.80 Aligned_cols=375 Identities=23% Similarity=0.236 Sum_probs=257.2
Q ss_pred CCccEEEcCCCCccCchHHHh-hhCCCCCcEEecCCCCCCChhh----HHhhcCCCCCcEEEccCCCCChhHHHHhc-CC
Q 007693 90 RYLRSLNVADCRRVTSSALWA-LTGMTCLKELDLSRCVKVTDAG----MKHLLSISTLEKLWLSETGLTADGIALLS-SL 163 (593)
Q Consensus 90 ~~L~~L~L~~~~~i~~~~~~~-l~~l~~L~~L~L~~~~~l~~~~----~~~l~~~~~L~~L~L~~~~~~~~~~~~l~-~l 163 (593)
++|++|+|++|+ +++..... +..+++|++|++++| .+++.. +..+..+++|++|++++|.+++..+..+. .+
T Consensus 3 ~~l~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 3 LDIQSLDIQCEE-LSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEEESCC-CCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred ccceehhhhhcc-cCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 467888888776 66655554 567778888888887 466543 34455667777777777777665554333 34
Q ss_pred C----CCCEEEcCCCCCCh----hhHHHhhcCCCCCEEEccCCccCccchHhhcCCCCCCeeeccccCCcCCCCCCCCcE
Q 007693 164 Q----NLSVLDLGGLPVTD----LVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLEC 235 (593)
Q Consensus 164 ~----~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~ 235 (593)
+ +|++|++++|.+.+ ..+..+..+++|++|++++|.+++..+..+...- ....++|++
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l--------------~~~~~~L~~ 146 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGL--------------LDPQCRLEK 146 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHH--------------TSTTCCCCE
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHH--------------hcCCCcceE
Confidence 4 57777777777764 3355666667777777777766654444332100 011234555
Q ss_pred EEcCCCcccchhcccCCCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcchh--hhcc-----cCCCccEEEc
Q 007693 236 LNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLT-----QMKALEHLDL 308 (593)
Q Consensus 236 L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~l~-----~~~~L~~L~L 308 (593)
|++++|.++.... ..++. .+..+++|++|++++|.+... ..+. ..++|++|++
T Consensus 147 L~L~~n~l~~~~~------------------~~l~~--~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L 206 (461)
T 1z7x_W 147 LQLEYCSLSAASC------------------EPLAS--VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKL 206 (461)
T ss_dssp EECTTSCCBGGGH------------------HHHHH--HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEEC
T ss_pred EECCCCCCCHHHH------------------HHHHH--HHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEc
Confidence 5555554442100 00111 123456677777777766543 2221 3679999999
Q ss_pred cCCCCChhH----HHHHHhccCCCcEEEcCCCCCCCchHHHHH----cCCCCCcEEEccCCCCChH----HHHHhhcCCC
Q 007693 309 SSSMIGDDS----VEMVACVGANLRNLNLSNTRFSSAGVGILA----GHLPNLEILSLSGTQIDDY----AISYMSMMPS 376 (593)
Q Consensus 309 ~~n~l~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~----~~~~~L~~L~l~~n~i~~~----~~~~l~~~~~ 376 (593)
++|.+++.. +..+... ++|++|++++|.+++.+...+. ..+++|++|++++|.+++. .+..+..+++
T Consensus 207 ~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 285 (461)
T 1z7x_W 207 ESCGVTSDNCRDLCGIVASK-ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES 285 (461)
T ss_dssp TTSCCBTTHHHHHHHHHHHC-TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTT
T ss_pred cCCCCcHHHHHHHHHHHHhC-CCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCC
Confidence 999999864 3444444 9999999999999887654432 3588999999999999986 4556677999
Q ss_pred CCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCC----ccccccCCCCCcEEecCCCCCCchhH
Q 007693 377 LKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDA----TLFPLSTFKELIHLSLRNASLTDVSL 452 (593)
Q Consensus 377 L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~ 452 (593)
|++|++++|.+.+..+.. ..-......++|++|++++|.+++. ++..+..+++|++|++++|.+++..+
T Consensus 286 L~~L~Ls~n~i~~~~~~~-------l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 358 (461)
T 1z7x_W 286 LKELSLAGNELGDEGARL-------LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV 358 (461)
T ss_dssp CCEEECTTCCCHHHHHHH-------HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHH
T ss_pred cceEECCCCCCchHHHHH-------HHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccH
Confidence 999999999987543330 0000112347999999999999875 34556778999999999999998777
Q ss_pred Hhhhc-----CCCCcEEEecCcccCc----ccccCccCCCCCceEecCCCccCCHHHHHHHHhhCC
Q 007693 453 HQLSS-----LSKLTNLSIRDAVLTN----SGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHP 509 (593)
Q Consensus 453 ~~l~~-----l~~L~~L~L~~n~l~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 509 (593)
..+.. .++|++|++++|.+++ ..+..+..+++|++|++++|++ ++.+...+...++
T Consensus 359 ~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i-~~~~~~~l~~~l~ 423 (461)
T 1z7x_W 359 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL-GDAGILQLVESVR 423 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSC-CHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCC-CHHHHHHHHHHhc
Confidence 66653 7899999999999997 4566777789999999999998 7777777776554
No 41
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=6.2e-34 Score=295.09 Aligned_cols=311 Identities=17% Similarity=0.158 Sum_probs=242.1
Q ss_pred cCCccEEEecCCCCCChhHHHHHhcCCCccEEEcCCCCccCchHHHhhhCCCCCcEEecCCCCCCChhhHHhhcCCCCCc
Q 007693 64 KHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLE 143 (593)
Q Consensus 64 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~~~~L~ 143 (593)
.++|++|++++|. +.+. + .+..+++|++|++++|+ ++.. .++.+++|++|++++| .++.. .++++++|+
T Consensus 41 l~~L~~L~Ls~n~-l~~~-~-~l~~l~~L~~L~Ls~n~-l~~~---~~~~l~~L~~L~Ls~N-~l~~~---~~~~l~~L~ 109 (457)
T 3bz5_A 41 LATLTSLDCHNSS-ITDM-T-GIEKLTGLTKLICTSNN-ITTL---DLSQNTNLTYLACDSN-KLTNL---DVTPLTKLT 109 (457)
T ss_dssp HTTCCEEECCSSC-CCCC-T-TGGGCTTCSEEECCSSC-CSCC---CCTTCTTCSEEECCSS-CCSCC---CCTTCTTCC
T ss_pred cCCCCEEEccCCC-cccC-h-hhcccCCCCEEEccCCc-CCeE---ccccCCCCCEEECcCC-CCcee---ecCCCCcCC
Confidence 4789999999997 5443 3 68899999999999998 7764 2889999999999999 56664 288999999
Q ss_pred EEEccCCCCChhHHHHhcCCCCCCEEEcCCCCCChhhHHHhhcCCCCCEEEccCCccCccchHhhcCCCCCCeeeccccC
Q 007693 144 KLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTG 223 (593)
Q Consensus 144 ~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 223 (593)
+|++++|.+++.. ++.+++|++|++++|.+.+. .++.+++|++|++++|...+.. .+..+++|++|++++|.
T Consensus 110 ~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 110 YLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK 181 (457)
T ss_dssp EEECCSSCCSCCC---CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCeec---CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc
Confidence 9999999999853 88999999999999999985 3788999999999999544444 47889999999999999
Q ss_pred CcCCC--CCCCCcEEEcCCCcccchhcccCCCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcchhhhcccCC
Q 007693 224 VTKLP--NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMK 301 (593)
Q Consensus 224 l~~l~--~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~ 301 (593)
++.++ .+++|+.|++++|.++.++ +..+++|++|++++|.+.+++ +..+++|+.|++++|.+++.+ +..++
T Consensus 182 l~~l~l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip----~~~l~~L~~L~l~~N~l~~~~-~~~l~ 254 (457)
T 3bz5_A 182 ITELDVSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID----VTPLTQLTYFDCSVNPLTELD-VSTLS 254 (457)
T ss_dssp CCCCCCTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSCCC-CTTCT
T ss_pred cceeccccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC----ccccCCCCEEEeeCCcCCCcC-HHHCC
Confidence 98865 7889999999999999873 778999999999999999975 458899999999999999875 56788
Q ss_pred CccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEE
Q 007693 302 ALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFID 381 (593)
Q Consensus 302 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~ 381 (593)
+|+.|++++| +|+.|++++|.+.+..+ .+.+++|+.|++++|...+..+. ..++|+.|+
T Consensus 255 ~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~---~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~ 313 (457)
T 3bz5_A 255 KLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ---AEGCRKIKELDVTHNTQLYLLDC---QAAGITELD 313 (457)
T ss_dssp TCCEEECTTC---------------CCSCCCCTTCTTCCEEE---CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCC
T ss_pred CCCEEeccCC---------------CCCEEECCCCccCCccc---ccccccCCEEECCCCcccceecc---CCCcceEec
Confidence 9999988764 46677788887665544 25678888888888865443321 223333333
Q ss_pred eeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCc
Q 007693 382 ISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTD 449 (593)
Q Consensus 382 Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 449 (593)
+++ +++|++|++++|++++. .++.+++|+.|++++|++++
T Consensus 314 l~~-------------------------~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 314 LSQ-------------------------NPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CTT-------------------------CTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB
T ss_pred hhh-------------------------cccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC
Confidence 322 23555666666666552 25555666666666666554
No 42
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.3e-33 Score=286.49 Aligned_cols=333 Identities=18% Similarity=0.162 Sum_probs=253.0
Q ss_pred CCCCCcEEecCCCCCCChhhHHhhcCCCCCcEEEccCCCCChhHHHHhcCCCCCCEEEcCCCCCChhhHHHhhcCCCCCE
Q 007693 113 GMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEY 192 (593)
Q Consensus 113 ~l~~L~~L~L~~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 192 (593)
.++++++|++++| .++......+..+++|++|++++|.+++..+..|+.+++|++|++++|.+.+..+..|+.+++|++
T Consensus 43 ~l~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCC-chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 4689999999999 577666666888999999999999999888778999999999999999999988888999999999
Q ss_pred EEccCCccCccchHhhcCCCCCCeeeccccCCcCCCCCCCCcEEEcCCCcccchhcccCCCCCcceEeccCccccchhhH
Q 007693 193 LDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREA 272 (593)
Q Consensus 193 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~~~~~~~~ 272 (593)
|++++|.++...+..|..+++|++|++++|.++.++ +..+..+++|++|++++|.+...+
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~------------------~~~~~~l~~L~~L~l~~n~l~~~~-- 181 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE------------------DDTFQATTSLQNLQLSSNRLTHVD-- 181 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC------------------TTTTSSCTTCCEEECCSSCCSBCC--
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC------------------hhhccCCCCCCEEECCCCcCCccc--
Confidence 999999999766666677776666666666554322 112334555555555555555432
Q ss_pred HhhhcCCCccEEeccCCCcchhhhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCC
Q 007693 273 FLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPN 352 (593)
Q Consensus 273 ~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 352 (593)
...+++|+.+++++|.++.+ ...++|++|++++|.++.... ...++|++|++++|.+++.. ..+.+++
T Consensus 182 --~~~l~~L~~L~l~~n~l~~~---~~~~~L~~L~l~~n~l~~~~~----~~~~~L~~L~l~~n~l~~~~---~l~~l~~ 249 (390)
T 3o6n_A 182 --LSLIPSLFHANVSYNLLSTL---AIPIAVEELDASHNSINVVRG----PVNVELTILKLQHNNLTDTA---WLLNYPG 249 (390)
T ss_dssp --GGGCTTCSEEECCSSCCSEE---ECCSSCSEEECCSSCCCEEEC----CCCSSCCEEECCSSCCCCCG---GGGGCTT
T ss_pred --cccccccceeeccccccccc---CCCCcceEEECCCCeeeeccc----cccccccEEECCCCCCcccH---HHcCCCC
Confidence 22456677777777766544 344578888888887775422 12268888999988888763 2367899
Q ss_pred CcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCcccccc
Q 007693 353 LEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLS 432 (593)
Q Consensus 353 L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 432 (593)
|++|++++|.+++..+..+..+++|++|++++|++.+.... +..+++|++|++++|.+++ ++..+.
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------------~~~l~~L~~L~L~~n~l~~-~~~~~~ 315 (390)
T 3o6n_A 250 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY-------------GQPIPTLKVLDLSHNHLLH-VERNQP 315 (390)
T ss_dssp CSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECS-------------SSCCTTCCEEECCSSCCCC-CGGGHH
T ss_pred ccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcc-------------cCCCCCCCEEECCCCccee-cCcccc
Confidence 99999999999988788888999999999999999876443 5778999999999999987 566678
Q ss_pred CCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcccccCccCCCCCceEecCCCccCC
Q 007693 433 TFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT 497 (593)
Q Consensus 433 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 497 (593)
.+++|++|++++|+++... +..+++|+.|++++|+++......+ +..+....+.++...|
T Consensus 316 ~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~~~~~--~~~~~~~~~~~~~~~c 375 (390)
T 3o6n_A 316 QFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQHC 375 (390)
T ss_dssp HHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHHHH--TTTCCTTTBCCCCSCC
T ss_pred ccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccchhHHHH--HHHHHhhcccccCcee
Confidence 8899999999999998863 6788999999999999887543332 2334444445555434
No 43
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2e-34 Score=302.67 Aligned_cols=137 Identities=20% Similarity=0.183 Sum_probs=79.8
Q ss_pred cCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCC
Q 007693 299 QMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLK 378 (593)
Q Consensus 299 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~ 378 (593)
.+++|++|++++|...+..+...... .+|++|++++|.+++.+...+ +.+++|++|++++|.+++..+..|..+++|+
T Consensus 198 ~l~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 275 (477)
T 2id5_A 198 RLYRLKVLEISHWPYLDTMTPNCLYG-LNLTSLSITHCNLTAVPYLAV-RHLVYLRFLNLSYNPISTIEGSMLHELLRLQ 275 (477)
T ss_dssp SCTTCCEEEEECCTTCCEECTTTTTT-CCCSEEEEESSCCCSCCHHHH-TTCTTCCEEECCSSCCCEECTTSCTTCTTCC
T ss_pred cCcccceeeCCCCccccccCcccccC-ccccEEECcCCcccccCHHHh-cCccccCeeECCCCcCCccChhhccccccCC
Confidence 34444444444443332222221222 356666666666665554444 4566666666666666665555566666666
Q ss_pred EEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCc
Q 007693 379 FIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTD 449 (593)
Q Consensus 379 ~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 449 (593)
.|+|++|++.+..+. .|..+++|++|+|++|.+++..+..|..+++|+.|++++|.+..
T Consensus 276 ~L~L~~n~l~~~~~~------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 276 EIQLVGGQLAVVEPY------------AFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp EEECCSSCCSEECTT------------TBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred EEECCCCccceECHH------------HhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 666666666665555 46666666677776666666555566666666667766666553
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=8.9e-33 Score=297.52 Aligned_cols=317 Identities=17% Similarity=0.231 Sum_probs=231.7
Q ss_pred CCCCcEEEccCCCCChhHHHHhcCCCCCCEEEcCCCCCChhhHHHhhcCCCCCEEEccCCccCccchHhhcCCCCCCeee
Q 007693 139 ISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLN 218 (593)
Q Consensus 139 ~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 218 (593)
+.+++.+++++|.++..++..|+.+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|+.+++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 46777777777777776666677777777777777777777666777777777777777777776666666666666666
Q ss_pred ccccCCcCCCCCCCCcEEEcCCCcccchhccc-CCCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcchhhhc
Q 007693 219 LAWTGVTKLPNISSLECLNLSNCTIDSILEGN-ENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFL 297 (593)
Q Consensus 219 l~~n~l~~l~~l~~L~~L~l~~n~l~~l~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l 297 (593)
+++|.++. +|+.+ ..+++|++|++++|.+..+++. .+..+++|++|++++|.+++++ +
T Consensus 130 L~~n~l~~-------------------l~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~-~ 188 (597)
T 3oja_B 130 LERNDLSS-------------------LPRGIFHNTPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSNRLTHVD-L 188 (597)
T ss_dssp CCSSCCCC-------------------CCTTTTTTCTTCCEEECCSSCCCBCCTT-TTTTCTTCCEEECTTSCCSBCC-G
T ss_pred eeCCCCCC-------------------CCHHHhccCCCCCEEEeeCCcCCCCChh-hhhcCCcCcEEECcCCCCCCcC-h
Confidence 65555544 43333 2444455555555544443332 1234555555555555555442 3
Q ss_pred ccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCC
Q 007693 298 TQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSL 377 (593)
Q Consensus 298 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L 377 (593)
..+++|++|++++|.+++.. .+++|+.|++++|.++.... ...++|+.|++++|.+++. ..+..+++|
T Consensus 189 ~~l~~L~~L~l~~n~l~~l~------~~~~L~~L~ls~n~l~~~~~----~~~~~L~~L~L~~n~l~~~--~~l~~l~~L 256 (597)
T 3oja_B 189 SLIPSLFHANVSYNLLSTLA------IPIAVEELDASHNSINVVRG----PVNVELTILKLQHNNLTDT--AWLLNYPGL 256 (597)
T ss_dssp GGCTTCSEEECCSSCCSEEE------CCTTCSEEECCSSCCCEEEC----SCCSCCCEEECCSSCCCCC--GGGGGCTTC
T ss_pred hhhhhhhhhhcccCcccccc------CCchhheeeccCCccccccc----ccCCCCCEEECCCCCCCCC--hhhccCCCC
Confidence 45667777777777766532 22678888888888776554 2346899999999998874 567889999
Q ss_pred CEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhc
Q 007693 378 KFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSS 457 (593)
Q Consensus 378 ~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 457 (593)
+.|+|++|.+.+..+. .+..+++|+.|+|++|.+++ ++..+..+++|+.|+|++|.++. +|..+..
T Consensus 257 ~~L~Ls~N~l~~~~~~------------~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~ 322 (597)
T 3oja_B 257 VEVDLSYNELEKIMYH------------PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQ 322 (597)
T ss_dssp SEEECCSSCCCEEESG------------GGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHH
T ss_pred CEEECCCCccCCCCHH------------HhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCc-cCccccc
Confidence 9999999999998887 68999999999999999998 56677889999999999999997 4557888
Q ss_pred CCCCcEEEecCcccCcccccCccCCCCCceEecCCCccCCHHHHHHHH
Q 007693 458 LSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFC 505 (593)
Q Consensus 458 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 505 (593)
+++|+.|++++|.+++.. +..+++|+.|++++|++.|++...++.
T Consensus 323 l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~~~~~ 367 (597)
T 3oja_B 323 FDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRALFR 367 (597)
T ss_dssp HTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHHHHTT
T ss_pred CCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHHHHHH
Confidence 999999999999999874 566789999999999997776555443
No 45
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=1.4e-32 Score=295.98 Aligned_cols=312 Identities=18% Similarity=0.177 Sum_probs=231.3
Q ss_pred CCCCCcEEecCCCCCCChhhHHhhcCCCCCcEEEccCCCCChhHHHHhcCCCCCCEEEcCCCCCChhhHHHhhcCCCCCE
Q 007693 113 GMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEY 192 (593)
Q Consensus 113 ~l~~L~~L~L~~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 192 (593)
.+++++.|++++| .++......+.++++|++|++++|.+++..+..|+.+++|++|++++|.+.+..+..|+++++|++
T Consensus 49 ~l~~l~~l~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCC-CCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 4679999999999 677766677888999999999999999988888999999999999999999998888999999999
Q ss_pred EEccCCccCccchHhhcCCCCCCeeeccccCCcCCCCCCCCcEEEcCCCcccchhcccCCCCCcceEeccCccccchhhH
Q 007693 193 LDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREA 272 (593)
Q Consensus 193 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~~~~~~~~ 272 (593)
|++++|.+++..+..|..+++|++|++++|.++.++ |..+..+++|++|++++|.+..++
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~------------------~~~~~~l~~L~~L~L~~N~l~~~~-- 187 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE------------------DDTFQATTSLQNLQLSSNRLTHVD-- 187 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC------------------TTTTTTCTTCCEEECTTSCCSBCC--
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCC------------------hhhhhcCCcCcEEECcCCCCCCcC--
Confidence 999999999877777777777776666666555432 112334445555555555444432
Q ss_pred HhhhcCCCccEEeccCCCcchhhhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCC
Q 007693 273 FLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPN 352 (593)
Q Consensus 273 ~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 352 (593)
...+++|+.|++++|.+.++ ...+.|++|++++|.++..... ..++|+.|++++|.+++.. .++.+++
T Consensus 188 --~~~l~~L~~L~l~~n~l~~l---~~~~~L~~L~ls~n~l~~~~~~----~~~~L~~L~L~~n~l~~~~---~l~~l~~ 255 (597)
T 3oja_B 188 --LSLIPSLFHANVSYNLLSTL---AIPIAVEELDASHNSINVVRGP----VNVELTILKLQHNNLTDTA---WLLNYPG 255 (597)
T ss_dssp --GGGCTTCSEEECCSSCCSEE---ECCTTCSEEECCSSCCCEEECS----CCSCCCEEECCSSCCCCCG---GGGGCTT
T ss_pred --hhhhhhhhhhhcccCccccc---cCCchhheeeccCCcccccccc----cCCCCCEEECCCCCCCCCh---hhccCCC
Confidence 12455666666666655543 3345677777777776643321 1257788888888777642 2356788
Q ss_pred CcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCcccccc
Q 007693 353 LEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLS 432 (593)
Q Consensus 353 L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 432 (593)
|++|++++|.+++..+..|+.+++|+.|+|++|.+.+.+.. +..+++|+.|+|++|.++. +|..+.
T Consensus 256 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-------------~~~l~~L~~L~Ls~N~l~~-i~~~~~ 321 (597)
T 3oja_B 256 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY-------------GQPIPTLKVLDLSHNHLLH-VERNQP 321 (597)
T ss_dssp CSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECS-------------SSCCTTCCEEECCSSCCCC-CGGGHH
T ss_pred CCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcc-------------cccCCCCcEEECCCCCCCc-cCcccc
Confidence 88888888888877777788888888888888888775433 5667888888888888886 556677
Q ss_pred CCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcc
Q 007693 433 TFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS 474 (593)
Q Consensus 433 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 474 (593)
.+++|+.|+|++|.+++.. +..+++|+.|++++|+++..
T Consensus 322 ~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 322 QFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp HHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred cCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCCh
Confidence 7888888888888887753 66778888888888887764
No 46
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.97 E-value=6.2e-30 Score=276.36 Aligned_cols=389 Identities=20% Similarity=0.224 Sum_probs=228.8
Q ss_pred hcCCccEEEecCCCCCChhHHHHHh-cCCCccEEEcCCCCccCchHHHhhh-CCCCCcEEecCCCCCCChhhHHhhc---
Q 007693 63 FKHNAEAIELRGENSVDAEWMAYLG-AFRYLRSLNVADCRRVTSSALWALT-GMTCLKELDLSRCVKVTDAGMKHLL--- 137 (593)
Q Consensus 63 ~~~~L~~L~L~~~~~~~~~~~~~~~-~~~~L~~L~L~~~~~i~~~~~~~l~-~l~~L~~L~L~~~~~l~~~~~~~l~--- 137 (593)
.+++|++|+|++|. ++...+..+. .+++|++|+|++|..+++..+..+. ++++|++|++++|. +++.....+.
T Consensus 103 ~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 103 SYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFP 180 (594)
T ss_dssp HCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSC
T ss_pred hCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHh
Confidence 35789999999997 6766666665 7999999999999667776666665 89999999999994 5554444443
Q ss_pred -CCCCCcEEEccCCC--CChhHHH-HhcCCCCCCEEEcCCCCCChhhHHHhhcCCCCCEEEccCCc-------cCccchH
Q 007693 138 -SISTLEKLWLSETG--LTADGIA-LLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQ-------VSNRGAA 206 (593)
Q Consensus 138 -~~~~L~~L~L~~~~--~~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-------l~~~~~~ 206 (593)
.+++|++|++++|. ++..... .+..+++|++|++++|...+..+..+..+++|++|++..+. +.+ .+.
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~ 259 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSV 259 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHH
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHH
Confidence 67899999999996 5544333 34578999999999995444477788899999999976653 222 334
Q ss_pred hhcCCCCCCee-eccccCCcCCC----CCCCCcEEEcCCCcccc--hhcccCCCCCcceEeccCccccchhhHHhhhcCC
Q 007693 207 VLKMFPRLSFL-NLAWTGVTKLP----NISSLECLNLSNCTIDS--ILEGNENKAPLAKISLAGTTFINEREAFLYIETS 279 (593)
Q Consensus 207 ~l~~l~~L~~L-~l~~n~l~~l~----~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 279 (593)
.+..+++|+.+ .+.......++ .+++|++|++++|.++. +...+..+++|++|++++| +...........++
T Consensus 260 ~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~ 338 (594)
T 2p1m_B 260 ALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK 338 (594)
T ss_dssp HHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred HHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence 67788888887 44433333333 45677777777776552 3333446677777777766 32211111122456
Q ss_pred CccEEeccC---------CCcchh--hhc-ccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcC--C----CCCCC-
Q 007693 280 LLSFLDVSN---------SSLSRF--CFL-TQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLS--N----TRFSS- 340 (593)
Q Consensus 280 ~L~~L~ls~---------n~l~~~--~~l-~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~--~----n~l~~- 340 (593)
+|++|++++ +.++.. ..+ ..+++|++|.+..+.+++..+..+...+++|++|+++ + +.+++
T Consensus 339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~ 418 (594)
T 2p1m_B 339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE 418 (594)
T ss_dssp TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC
T ss_pred CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC
Confidence 666666622 233322 111 2355566665555555555555554333556666655 2 33442
Q ss_pred ---chHHHHHcCCCCCcEEEccCCCCChHHHHHhhc-CCCCCEEEeeCCccCccccccccchhhhhhHHhh-ccCCccCE
Q 007693 341 ---AGVGILAGHLPNLEILSLSGTQIDDYAISYMSM-MPSLKFIDISNTDIKGFIQQVGAETDLVLSLTAL-QNLNHLER 415 (593)
Q Consensus 341 ---~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~-~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~-~~l~~L~~ 415 (593)
.+...++..+++|++|++++ .+++..+..++. +++|+.|++++|.+++.... .+ ..+++|++
T Consensus 419 ~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~------------~l~~~~~~L~~ 485 (594)
T 2p1m_B 419 PLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMH------------HVLSGCDSLRK 485 (594)
T ss_dssp CTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHH------------HHHHHCTTCCE
T ss_pred chhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHH------------HHHhcCCCcCE
Confidence 22223334455555555554 455544444443 55555555555555432222 12 34555555
Q ss_pred EecCCCCcCCCccc-cccCCCCCcEEecCCCCCCchhHHhh-hcCCCCcEEEecC
Q 007693 416 LNLEQTQVSDATLF-PLSTFKELIHLSLRNASLTDVSLHQL-SSLSKLTNLSIRD 468 (593)
Q Consensus 416 L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~ 468 (593)
|++++|.+++.... ....+++|++|++++|+++......+ ..+|+|+...+..
T Consensus 486 L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~ 540 (594)
T 2p1m_B 486 LEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDE 540 (594)
T ss_dssp EEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECS
T ss_pred EECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecC
Confidence 55555555432222 22334555555555555544333333 3344444444433
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=2.7e-29 Score=250.20 Aligned_cols=287 Identities=16% Similarity=0.199 Sum_probs=175.2
Q ss_pred CCcEEEccCCCCChhHHHHhcCCCCCCEEEcCCCCCChhhHHHhhcCCCCCEEEccCCccCccchHhhcCCCCCCeeecc
Q 007693 141 TLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLA 220 (593)
Q Consensus 141 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 220 (593)
++++++++++.++..+. .-.++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..|..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~lp~---~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPK---DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCSCCC---SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccccCc---cCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 45555555555443221 112456666666666666555556666666666666666666555555555555555554
Q ss_pred ccCCcCCCCCCCCcEEEcCCCcccchhcccCCCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcchh----hh
Q 007693 221 WTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF----CF 296 (593)
Q Consensus 221 ~n~l~~l~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~----~~ 296 (593)
+|.++. +|..+. ++|++|++++|.+..++.. .+.++++|++|++++|.+... ..
T Consensus 109 ~n~l~~-------------------l~~~~~--~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~ 166 (330)
T 1xku_A 109 KNQLKE-------------------LPEKMP--KTLQELRVHENEITKVRKS-VFNGLNQMIVVELGTNPLKSSGIENGA 166 (330)
T ss_dssp SSCCSB-------------------CCSSCC--TTCCEEECCSSCCCBBCHH-HHTTCTTCCEEECCSSCCCGGGBCTTG
T ss_pred CCcCCc-------------------cChhhc--ccccEEECCCCcccccCHh-HhcCCccccEEECCCCcCCccCcChhh
Confidence 444443 333222 3455555555555444332 233455555555555554321 33
Q ss_pred cccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCC
Q 007693 297 LTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPS 376 (593)
Q Consensus 297 l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~ 376 (593)
+..+++|++|++++|.++ ..+. ...++|++|++++|.+++..+..+..+++
T Consensus 167 ~~~l~~L~~L~l~~n~l~-------------------------~l~~----~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 217 (330)
T 1xku_A 167 FQGMKKLSYIRIADTNIT-------------------------TIPQ----GLPPSLTELHLDGNKITKVDAASLKGLNN 217 (330)
T ss_dssp GGGCTTCCEEECCSSCCC-------------------------SCCS----SCCTTCSEEECTTSCCCEECTGGGTTCTT
T ss_pred ccCCCCcCEEECCCCccc-------------------------cCCc----cccccCCEEECCCCcCCccCHHHhcCCCC
Confidence 445555555555555544 3222 11356777777777777766666777788
Q ss_pred CCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhh
Q 007693 377 LKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLS 456 (593)
Q Consensus 377 L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 456 (593)
|++|++++|.+.+..+. .+..+++|++|++++|.++. +|..+..+++|++|++++|+++++.+..|.
T Consensus 218 L~~L~Ls~n~l~~~~~~------------~~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~ 284 (330)
T 1xku_A 218 LAKLGLSFNSISAVDNG------------SLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFC 284 (330)
T ss_dssp CCEEECCSSCCCEECTT------------TGGGSTTCCEEECCSSCCSS-CCTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred CCEEECCCCcCceeChh------------hccCCCCCCEEECCCCcCcc-CChhhccCCCcCEEECCCCcCCccChhhcC
Confidence 88888888888776665 57778888888888888875 566777888888888888888877666664
Q ss_pred c------CCCCcEEEecCcccCc--ccccCccCCCCCceEecCCCc
Q 007693 457 S------LSKLTNLSIRDAVLTN--SGLGSFKPPRSLKLLDLHGGW 494 (593)
Q Consensus 457 ~------l~~L~~L~L~~n~l~~--~~~~~~~~~~~L~~L~l~~n~ 494 (593)
. .+.++.|++++|++.. +.+..|..+.+++.+++++|+
T Consensus 285 ~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 285 PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 3 3678888888888764 556677778888888888874
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=8.4e-30 Score=254.07 Aligned_cols=284 Identities=17% Similarity=0.196 Sum_probs=169.9
Q ss_pred CCcEEEccCCCCChhHHHHhcCCCCCCEEEcCCCCCChhhHHHhhcCCCCCEEEccCCccCccchHhhcCCCCCCeeecc
Q 007693 141 TLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLA 220 (593)
Q Consensus 141 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 220 (593)
++++++++++.++..+. .+ .++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..|..+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~ip~-~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPK-EI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSSCCS-CC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccccCC-CC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 45555555555543221 11 2456666666666666555566666777777777776666666666666655555555
Q ss_pred ccCCcCCCC--CCCCcEEEcCCCcccchhcccCCCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcchh----
Q 007693 221 WTGVTKLPN--ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF---- 294 (593)
Q Consensus 221 ~n~l~~l~~--l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~---- 294 (593)
+|.++.++. .++|++|++++|.+..++... +..+++|++|++++|.++..
T Consensus 111 ~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~------------------------~~~l~~L~~L~l~~n~l~~~~~~~ 166 (332)
T 2ft3_A 111 KNHLVEIPPNLPSSLVELRIHDNRIRKVPKGV------------------------FSGLRNMNCIEMGGNPLENSGFEP 166 (332)
T ss_dssp SSCCCSCCSSCCTTCCEEECCSSCCCCCCSGG------------------------GSSCSSCCEEECCSCCCBGGGSCT
T ss_pred CCcCCccCccccccCCEEECCCCccCccCHhH------------------------hCCCccCCEEECCCCccccCCCCc
Confidence 555544431 134555555555444443321 22334444444444444321
Q ss_pred hhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcC
Q 007693 295 CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMM 374 (593)
Q Consensus 295 ~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~ 374 (593)
..+..+ +|++|++++|.+++ .+. ...++|++|++++|.+++..+..+..+
T Consensus 167 ~~~~~l-~L~~L~l~~n~l~~-------------------------l~~----~~~~~L~~L~l~~n~i~~~~~~~l~~l 216 (332)
T 2ft3_A 167 GAFDGL-KLNYLRISEAKLTG-------------------------IPK----DLPETLNELHLDHNKIQAIELEDLLRY 216 (332)
T ss_dssp TSSCSC-CCSCCBCCSSBCSS-------------------------CCS----SSCSSCSCCBCCSSCCCCCCTTSSTTC
T ss_pred ccccCC-ccCEEECcCCCCCc-------------------------cCc----cccCCCCEEECCCCcCCccCHHHhcCC
Confidence 223333 56666666665553 221 112456666666666666555566677
Q ss_pred CCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHh
Q 007693 375 PSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQ 454 (593)
Q Consensus 375 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 454 (593)
++|++|++++|.+.+..+. .+..+++|++|++++|.++. +|..+..+++|++|++++|++++..+..
T Consensus 217 ~~L~~L~L~~N~l~~~~~~------------~~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~L~~L~l~~N~l~~~~~~~ 283 (332)
T 2ft3_A 217 SKLYRLGLGHNQIRMIENG------------SLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVGVND 283 (332)
T ss_dssp TTCSCCBCCSSCCCCCCTT------------GGGGCTTCCEEECCSSCCCB-CCTTGGGCTTCCEEECCSSCCCBCCTTS
T ss_pred CCCCEEECCCCcCCcCChh------------HhhCCCCCCEEECCCCcCee-cChhhhcCccCCEEECCCCCCCccChhH
Confidence 7777777777777776665 57777778888888877774 5666777778888888888877766666
Q ss_pred hhc------CCCCcEEEecCcccC--cccccCccCCCCCceEecCCCc
Q 007693 455 LSS------LSKLTNLSIRDAVLT--NSGLGSFKPPRSLKLLDLHGGW 494 (593)
Q Consensus 455 l~~------l~~L~~L~L~~n~l~--~~~~~~~~~~~~L~~L~l~~n~ 494 (593)
|.. .++|+.|++++|++. +..+..|..+++|+.+++++|+
T Consensus 284 ~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 284 FCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 544 366888888888877 5666777778888888888775
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=7.5e-29 Score=244.27 Aligned_cols=256 Identities=18% Similarity=0.226 Sum_probs=190.5
Q ss_pred CeeeccccCCcCCCC--CCCCcEEEcCCCcccchhccc-CCCCCcceEeccCccccch---hhHHhhhcCCCccEEeccC
Q 007693 215 SFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSILEGN-ENKAPLAKISLAGTTFINE---REAFLYIETSLLSFLDVSN 288 (593)
Q Consensus 215 ~~L~l~~n~l~~l~~--l~~L~~L~l~~n~l~~l~~~~-~~~~~L~~L~l~~n~~~~~---~~~~~~~~~~~L~~L~ls~ 288 (593)
+.++.+++.++.+|. .+++++|++++|.++.+|... ..+++|++|++++|.+... +.. +..+++|++|++++
T Consensus 10 ~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS--DFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH--HHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc--cccccccCEEECCC
Confidence 345666666666552 346777777777777666554 3666666666666666543 122 22455556666655
Q ss_pred CCcchh-hhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHH
Q 007693 289 SSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA 367 (593)
Q Consensus 289 n~l~~~-~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~ 367 (593)
|.+..+ ..+..++ +|++|++++|.+++......+..+++|++|++++|.+.+..
T Consensus 88 n~i~~l~~~~~~l~-------------------------~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 142 (306)
T 2z66_A 88 NGVITMSSNFLGLE-------------------------QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142 (306)
T ss_dssp CSEEEEEEEEETCT-------------------------TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS
T ss_pred CccccChhhcCCCC-------------------------CCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc
Confidence 555544 2244444 45555555555444433122256788888888888888777
Q ss_pred HHHhhcCCCCCEEEeeCCccCc-cccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCC
Q 007693 368 ISYMSMMPSLKFIDISNTDIKG-FIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNAS 446 (593)
Q Consensus 368 ~~~l~~~~~L~~L~Ls~n~i~~-~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 446 (593)
+..+..+++|++|++++|.+.+ ..+. .+..+++|++|++++|.+++..+..+..+++|++|++++|+
T Consensus 143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 210 (306)
T 2z66_A 143 NGIFNGLSSLEVLKMAGNSFQENFLPD------------IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 210 (306)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECS------------CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred hhhcccCcCCCEEECCCCccccccchh------------HHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc
Confidence 7778889999999999999886 4555 58899999999999999999888899999999999999999
Q ss_pred CCchhHHhhhcCCCCcEEEecCcccCcccccCccCC-CCCceEecCCCccCCHHHHHHHHhhCC
Q 007693 447 LTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPP-RSLKLLDLHGGWLLTEDAILQFCKMHP 509 (593)
Q Consensus 447 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~~ 509 (593)
+++..+..+..+++|+.|++++|++++..+..+..+ ++|++|++++|++.|+|...++..|+.
T Consensus 211 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~ 274 (306)
T 2z66_A 211 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIK 274 (306)
T ss_dssp CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHH
T ss_pred cCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHH
Confidence 999887789999999999999999999989899888 499999999999999998877766653
No 50
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=2.5e-28 Score=253.15 Aligned_cols=257 Identities=14% Similarity=0.183 Sum_probs=196.0
Q ss_pred cEEEcCCCcccchhcccCCCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcchh--hhcccCCCccEEEccCC
Q 007693 234 ECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSS 311 (593)
Q Consensus 234 ~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~L~~n 311 (593)
..++.++..++.+|..+. ++++.|++++|.+..++.. .+.++++|++|++++|.+..+ ..+..+++|++|++++|
T Consensus 46 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVN-SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp CEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTT-TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHH-HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 344445555555554433 4455555555555544432 234556666666666666555 35666777777777777
Q ss_pred CCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCC-CCChHHHHHhhcCCCCCEEEeeCCccCcc
Q 007693 312 MIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGT-QIDDYAISYMSMMPSLKFIDISNTDIKGF 390 (593)
Q Consensus 312 ~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~ 390 (593)
.+++.....+..+ ++|++|++++|.++......+ ..+++|++|++++| .+....+..|.++++|++|++++|.+...
T Consensus 123 ~l~~~~~~~~~~l-~~L~~L~L~~N~i~~~~~~~~-~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 200 (440)
T 3zyj_A 123 RLTTIPNGAFVYL-SKLKELWLRNNPIESIPSYAF-NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI 200 (440)
T ss_dssp CCSSCCTTTSCSC-SSCCEEECCSCCCCEECTTTT-TTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred cCCeeCHhHhhcc-ccCceeeCCCCcccccCHHHh-hhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence 7765554444444 777777777777776655554 56888999999884 45555556788899999999999998854
Q ss_pred ccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcc
Q 007693 391 IQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAV 470 (593)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 470 (593)
+ . +..+++|++|+|++|.+++..+..|..+++|+.|++++|+++++.+..|.++++|+.|+|++|+
T Consensus 201 ~-~-------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 266 (440)
T 3zyj_A 201 P-N-------------LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN 266 (440)
T ss_dssp C-C-------------CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC
T ss_pred c-c-------------cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC
Confidence 3 3 7888999999999999999889999999999999999999999999999999999999999999
Q ss_pred cCcccccCccCCCCCceEecCCCccCCHHHHHHHHhhCC
Q 007693 471 LTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHP 509 (593)
Q Consensus 471 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 509 (593)
+++..+..|..+++|+.|+|++|++.|+|.+.|+..|+.
T Consensus 267 l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~l~~~~~ 305 (440)
T 3zyj_A 267 LTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIK 305 (440)
T ss_dssp CCCCCTTTTSSCTTCCEEECCSSCEECSSTTHHHHHHHH
T ss_pred CCccChhHhccccCCCEEEcCCCCccCCCCchHHHHHHH
Confidence 999988899999999999999999999999998876653
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=3.8e-29 Score=246.60 Aligned_cols=249 Identities=18% Similarity=0.212 Sum_probs=212.3
Q ss_pred CCCcEEEcCCCccc---chhcccCCCCCcceEeccC-ccccc-hhhHHhhhcCCCccEEeccCCCcchh--hhcccCCCc
Q 007693 231 SSLECLNLSNCTID---SILEGNENKAPLAKISLAG-TTFIN-EREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKAL 303 (593)
Q Consensus 231 ~~L~~L~l~~n~l~---~l~~~~~~~~~L~~L~l~~-n~~~~-~~~~~~~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L 303 (593)
.+++.|++++|.+. .+|..+..+++|++|++++ |.+.+ +|.. +.++++|++|++++|.+++. ..+..+++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~--l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA--IAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG--GGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh--HhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 46778888888887 4777788888899999885 77764 4443 45788999999999988744 568889999
Q ss_pred cEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCC-CCcEEEccCCCCChHHHHHhhcCCCCCEEEe
Q 007693 304 EHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLP-NLEILSLSGTQIDDYAISYMSMMPSLKFIDI 382 (593)
Q Consensus 304 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L 382 (593)
++|++++|.+++..+..+..+ ++|++|++++|.+++..+..+ +.++ +|++|++++|.+++..+..+..++ |+.|++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~l-~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~L 204 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSL-PNLVGITFDGNRISGAIPDSY-GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDL 204 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGC-TTCCEEECCSSCCEEECCGGG-GCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEEC
T ss_pred CEEeCCCCccCCcCChHHhcC-CCCCeEECcCCcccCcCCHHH-hhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEEC
Confidence 999999999887777777776 899999999999987666666 4566 999999999999988888888887 999999
Q ss_pred eCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhcCCCCc
Q 007693 383 SNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLT 462 (593)
Q Consensus 383 s~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 462 (593)
++|.+.+..+. .+..+++|++|++++|.+++..+. +..+++|++|++++|++++..|..+..+++|+
T Consensus 205 s~N~l~~~~~~------------~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 271 (313)
T 1ogq_A 205 SRNMLEGDASV------------LFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271 (313)
T ss_dssp CSSEEEECCGG------------GCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCC
T ss_pred cCCcccCcCCH------------HHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCC
Confidence 99999988777 689999999999999999986554 88899999999999999988999999999999
Q ss_pred EEEecCcccCcccccCccCCCCCceEecCCCccCCH
Q 007693 463 NLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTE 498 (593)
Q Consensus 463 ~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~ 498 (593)
.|++++|++++..|.. ..+++|+.+++++|+..|+
T Consensus 272 ~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 272 SLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp EEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred EEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 9999999999887776 7789999999999996564
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=3.4e-28 Score=253.02 Aligned_cols=257 Identities=17% Similarity=0.201 Sum_probs=199.1
Q ss_pred cEEEcCCCcccchhcccCCCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcchh--hhcccCCCccEEEccCC
Q 007693 234 ECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSS 311 (593)
Q Consensus 234 ~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~L~~n 311 (593)
..++.++..++.+|..+. ++++.|++++|.+..+++. .+.++++|++|++++|.++.+ ..+..+++|++|++++|
T Consensus 57 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQAD-TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp CEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHH-HcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 344455555555554332 4555555655555554332 234566666666666666655 45667777777777777
Q ss_pred CCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCC-CCChHHHHHhhcCCCCCEEEeeCCccCcc
Q 007693 312 MIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGT-QIDDYAISYMSMMPSLKFIDISNTDIKGF 390 (593)
Q Consensus 312 ~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~ 390 (593)
.+++.....+..+ ++|++|++++|.++......+ ..+++|++|++++| .+....+..|..+++|++|++++|++.+.
T Consensus 134 ~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 134 WLTVIPSGAFEYL-SKLRELWLRNNPIESIPSYAF-NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp CCSBCCTTTSSSC-TTCCEEECCSCCCCEECTTTT-TTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred cCCccChhhhccc-CCCCEEECCCCCcceeCHhHH-hcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 7776555545444 788888888888776665554 56889999999884 56555556688899999999999999865
Q ss_pred ccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcc
Q 007693 391 IQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAV 470 (593)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 470 (593)
+. +..+++|++|+|++|.+++..+..|..+++|+.|++++|++++..+..|.++++|+.|+|++|+
T Consensus 212 -~~-------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 212 -PN-------------LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN 277 (452)
T ss_dssp -CC-------------CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred -cc-------------ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc
Confidence 33 7788999999999999999889999999999999999999999999999999999999999999
Q ss_pred cCcccccCccCCCCCceEecCCCccCCHHHHHHHHhhCC
Q 007693 471 LTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHP 509 (593)
Q Consensus 471 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 509 (593)
+++..+..+..+++|+.|++++|++.|+|.+.|+..|+.
T Consensus 278 l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~~l~~~l~ 316 (452)
T 3zyi_A 278 LSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLR 316 (452)
T ss_dssp CSCCCTTSSTTCTTCCEEECCSSCEECSTTTHHHHHHHH
T ss_pred CCccChHHhccccCCCEEEccCCCcCCCCCchHHHHHHH
Confidence 999988899999999999999999999999988876654
No 53
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=3.3e-28 Score=242.50 Aligned_cols=287 Identities=14% Similarity=0.199 Sum_probs=154.9
Q ss_pred CccEEEcCCCCccCchHHHhhhCCCCCcEEecCCCCCCChhhHHhhcCCCCCcEEEccCCCCChhHHHHhcCCCCCCEEE
Q 007693 91 YLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLD 170 (593)
Q Consensus 91 ~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ 170 (593)
+|+.++++++. ++.. +..+ .++|++|++++| .++...+..+.++++|++|++++|.+++..+..|+.+++|++|+
T Consensus 34 ~l~~l~~~~~~-l~~i-p~~~--~~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLG-LKAV-PKEI--SPDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSC-CSSC-CSCC--CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred cCCEEECCCCC-cccc-CCCC--CCCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 46666666654 4321 1111 245666666666 45544444555666666666666666655555555666666666
Q ss_pred cCCCCCChhhHHHhhcCCCCCEEEccCCccCccchHhhcCCCCCCeeeccccCCcCCCCCCCCcEEEcCCCcccc--h-h
Q 007693 171 LGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDS--I-L 247 (593)
Q Consensus 171 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~l~~n~l~~--l-~ 247 (593)
+++|.+..... .+. ++|++|++++|.++...+..+..+ ++|++|++++|.++. + +
T Consensus 109 L~~n~l~~l~~-~~~--~~L~~L~l~~n~i~~~~~~~~~~l-------------------~~L~~L~l~~n~l~~~~~~~ 166 (332)
T 2ft3_A 109 ISKNHLVEIPP-NLP--SSLVELRIHDNRIRKVPKGVFSGL-------------------RNMNCIEMGGNPLENSGFEP 166 (332)
T ss_dssp CCSSCCCSCCS-SCC--TTCCEEECCSSCCCCCCSGGGSSC-------------------SSCCEEECCSCCCBGGGSCT
T ss_pred CCCCcCCccCc-ccc--ccCCEEECCCCccCccCHhHhCCC-------------------ccCCEEECCCCccccCCCCc
Confidence 66665553221 111 455555555555554444444444 455555555555542 2 2
Q ss_pred cccCCCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcchhhhcccCCCccEEEccCCCCChhHHHHHHhccCC
Q 007693 248 EGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGAN 327 (593)
Q Consensus 248 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~ 327 (593)
..+..+ +|++|++++|.+..++..+ .++|++|++++|.+++..+..+
T Consensus 167 ~~~~~l-~L~~L~l~~n~l~~l~~~~--------------------------~~~L~~L~l~~n~i~~~~~~~l------ 213 (332)
T 2ft3_A 167 GAFDGL-KLNYLRISEAKLTGIPKDL--------------------------PETLNELHLDHNKIQAIELEDL------ 213 (332)
T ss_dssp TSSCSC-CCSCCBCCSSBCSSCCSSS--------------------------CSSCSCCBCCSSCCCCCCTTSS------
T ss_pred ccccCC-ccCEEECcCCCCCccCccc--------------------------cCCCCEEECCCCcCCccCHHHh------
Confidence 222233 5555555555544433211 1344455555554443222222
Q ss_pred CcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhh
Q 007693 328 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTAL 407 (593)
Q Consensus 328 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~ 407 (593)
..+++|++|++++|.+++..+..+..+++|++|++++|++...+ . .+
T Consensus 214 --------------------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp-~------------~l 260 (332)
T 2ft3_A 214 --------------------LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVP-A------------GL 260 (332)
T ss_dssp --------------------TTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCC-T------------TG
T ss_pred --------------------cCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecC-h------------hh
Confidence 23455555555555555554445566666777777776666332 2 36
Q ss_pred ccCCccCEEecCCCCcCCCccccccC------CCCCcEEecCCCCCC--chhHHhhhcCCCCcEEEecCcc
Q 007693 408 QNLNHLERLNLEQTQVSDATLFPLST------FKELIHLSLRNASLT--DVSLHQLSSLSKLTNLSIRDAV 470 (593)
Q Consensus 408 ~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~L~~n~ 470 (593)
..+++|++|++++|.+++..+..|.. .+.|+.|++++|.+. +..+..|..+++|+.+++++|+
T Consensus 261 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 261 PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 66777777777777777655555543 356778888888776 5566677778888888887764
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.8e-28 Score=246.58 Aligned_cols=262 Identities=19% Similarity=0.217 Sum_probs=167.9
Q ss_pred CCcEEEcCCCcccchhc-ccCCCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcchh--hhcccCCCccEEEc
Q 007693 232 SLECLNLSNCTIDSILE-GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDL 308 (593)
Q Consensus 232 ~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~L 308 (593)
+|++|++++|.++.++. .+..+++|++|++++|.+..+++. .+.++++|++|++++|.++.+ ..+..+++|++|++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED-SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHh-hcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 45555555555554444 333555555555555555544322 123455555555555555554 22455566666666
Q ss_pred cCCCCChhHH-HHHHhccCCCcEEEcCCC-CCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCc
Q 007693 309 SSSMIGDDSV-EMVACVGANLRNLNLSNT-RFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTD 386 (593)
Q Consensus 309 ~~n~l~~~~~-~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~ 386 (593)
++|.+++... ..+..+ ++|++|++++| .+++..+..+ +.+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 132 ~~n~l~~l~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 209 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHL-TKLQILRVGNMDTFTKIQRKDF-AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 209 (353)
T ss_dssp TTCCCSSSCSSCSCTTC-TTCCEEEEEESSSCCEECTTTT-TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC
T ss_pred CCCCCcccCchhhhccC-CCCcEEECCCCccccccCHHHc-cCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc
Confidence 6665554322 122333 56666666665 3444433333 456777777777777776666667777777777777777
Q ss_pred cCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccc---cCCCCCcEEecCCCCCCch----hHHhhhcCC
Q 007693 387 IKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPL---STFKELIHLSLRNASLTDV----SLHQLSSLS 459 (593)
Q Consensus 387 i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~----~~~~l~~l~ 459 (593)
+...... .+..+++|++|++++|.+++..+..+ ...+.++.++++++.+++. .|..+..++
T Consensus 210 l~~~~~~------------~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~ 277 (353)
T 2z80_A 210 HILLLEI------------FVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQIS 277 (353)
T ss_dssp STTHHHH------------HHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCT
T ss_pred cccchhh------------hhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhccc
Confidence 7544433 45567777777777777776544433 2456788899999988873 567789999
Q ss_pred CCcEEEecCcccCcccccCccCCCCCceEecCCCccCCHHH-HHHHHhhC
Q 007693 460 KLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDA-ILQFCKMH 508 (593)
Q Consensus 460 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~ 508 (593)
+|+.|++++|+++.++...|..+++|++|++++|++.|++. +.++..|.
T Consensus 278 ~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l~~l~~~~ 327 (353)
T 2z80_A 278 GLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 327 (353)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHH
T ss_pred CCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCCcHHHHHHH
Confidence 99999999999998766667889999999999999999985 66665554
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.7e-28 Score=239.10 Aligned_cols=237 Identities=15% Similarity=0.200 Sum_probs=195.2
Q ss_pred eEeccCccccchhhHHhhhcCCCccEEeccCCCcchh--hhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCC
Q 007693 258 KISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSN 335 (593)
Q Consensus 258 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~ 335 (593)
+++.+++.+..+|.. -.+++++|++++|.++.+ ..+..+++|++|++++|.+++..+..+..+ ++|++|++++
T Consensus 15 ~~~c~~~~l~~ip~~----~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~ 89 (285)
T 1ozn_A 15 TTSCPQQGLQAVPVG----IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGL-ALLEQLDLSD 89 (285)
T ss_dssp EEECCSSCCSSCCTT----CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC-TTCCEEECCS
T ss_pred EEEcCcCCcccCCcC----CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCc-cCCCEEeCCC
Confidence 444555555544432 135666666666666665 346777888888888888877666666665 8888888888
Q ss_pred CC-CCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccC
Q 007693 336 TR-FSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLE 414 (593)
Q Consensus 336 n~-l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~ 414 (593)
|. ++...+..+ +.+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+. .+..+++|+
T Consensus 90 n~~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------~~~~l~~L~ 156 (285)
T 1ozn_A 90 NAQLRSVDPATF-HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD------------TFRDLGNLT 156 (285)
T ss_dssp CTTCCCCCTTTT-TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT------------TTTTCTTCC
T ss_pred CCCccccCHHHh-cCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHh------------HhccCCCcc
Confidence 86 776655555 5689999999999999988777888999999999999999887766 688999999
Q ss_pred EEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcccccCccCCCCCceEecCCCc
Q 007693 415 RLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGW 494 (593)
Q Consensus 415 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 494 (593)
+|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+
T Consensus 157 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 157 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred EEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 99999999998777779999999999999999999989999999999999999999999888889999999999999999
Q ss_pred cCCHHHHHHHHhhCCcEE
Q 007693 495 LLTEDAILQFCKMHPRIE 512 (593)
Q Consensus 495 ~~~~~~~~~~~~~~~~l~ 512 (593)
+.|++...++..++....
T Consensus 237 ~~c~~~~~~~~~~l~~~~ 254 (285)
T 1ozn_A 237 WVCDCRARPLWAWLQKFR 254 (285)
T ss_dssp EECSGGGHHHHHHHHHCC
T ss_pred ccCCCCcHHHHHHHHhcc
Confidence 999999988887776544
No 56
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=4.4e-27 Score=234.23 Aligned_cols=264 Identities=19% Similarity=0.228 Sum_probs=209.2
Q ss_pred CCCeeeccccCCcCCCC--CCCCcEEEcCCCcccchhc-ccCCCCCcceEeccCccccchhhHHhhhcCCCccEEeccCC
Q 007693 213 RLSFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSILE-GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNS 289 (593)
Q Consensus 213 ~L~~L~l~~n~l~~l~~--l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n 289 (593)
+++.++++++.++.+|. .+.++.|++++|.++.++. .+..+++|++|++++|.+..+.+. .+..+++|++|++++|
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG-AFAPLVKLERLYLSKN 110 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECCSS
T ss_pred CCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHH-HhcCCCCCCEEECCCC
Confidence 44555555555555542 3567777777777777665 455778888888888887776332 2447788888888888
Q ss_pred CcchhhhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCC--chHHHHHcCCCCCcEEEccCCCCChHH
Q 007693 290 SLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS--AGVGILAGHLPNLEILSLSGTQIDDYA 367 (593)
Q Consensus 290 ~l~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~~~~L~~L~l~~n~i~~~~ 367 (593)
.++.++.- ..++|++|++++|.+++..+..+..+ ++|++|++++|.++. ..+..+ +.+++|++|++++|.++...
T Consensus 111 ~l~~l~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~-~~l~~L~~L~l~~n~l~~l~ 187 (330)
T 1xku_A 111 QLKELPEK-MPKTLQELRVHENEITKVRKSVFNGL-NQMIVVELGTNPLKSSGIENGAF-QGMKKLSYIRIADTNITTIP 187 (330)
T ss_dssp CCSBCCSS-CCTTCCEEECCSSCCCBBCHHHHTTC-TTCCEEECCSSCCCGGGBCTTGG-GGCTTCCEEECCSSCCCSCC
T ss_pred cCCccChh-hcccccEEECCCCcccccCHhHhcCC-ccccEEECCCCcCCccCcChhhc-cCCCCcCEEECCCCccccCC
Confidence 88766321 12789999999999998877777776 899999999998865 333344 67999999999999998643
Q ss_pred HHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCC
Q 007693 368 ISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASL 447 (593)
Q Consensus 368 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 447 (593)
. ...++|++|++++|.+.+..+. .+..+++|++|++++|.+++..+..+..+++|++|++++|++
T Consensus 188 ~---~~~~~L~~L~l~~n~l~~~~~~------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 252 (330)
T 1xku_A 188 Q---GLPPSLTELHLDGNKITKVDAA------------SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252 (330)
T ss_dssp S---SCCTTCSEEECTTSCCCEECTG------------GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC
T ss_pred c---cccccCCEEECCCCcCCccCHH------------HhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcC
Confidence 2 1238999999999999988776 689999999999999999998777899999999999999999
Q ss_pred CchhHHhhhcCCCCcEEEecCcccCcccccCccCC------CCCceEecCCCccC
Q 007693 448 TDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPP------RSLKLLDLHGGWLL 496 (593)
Q Consensus 448 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~------~~L~~L~l~~n~~~ 496 (593)
+. .|..+..+++|++|++++|+|+++++..|... +.++.|++++|++.
T Consensus 253 ~~-lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 253 VK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp SS-CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred cc-CChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence 96 56678999999999999999999988877543 78899999999984
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=3.6e-28 Score=240.32 Aligned_cols=267 Identities=20% Similarity=0.197 Sum_probs=174.6
Q ss_pred CcEEEccCCCCChhHHHHhcCCCCCCEEEcCCCCCChhhHHHhhcCCCCCEEEccCCccCccchHhhcCCCCCCeeeccc
Q 007693 142 LEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAW 221 (593)
Q Consensus 142 L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 221 (593)
++..+++.+.+.......+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 4445555555555545555566677777777777777766777777777777777777765443 55555555555555
Q ss_pred cCCcCCCCCCCCcEEEcCCCcccchhcccCCCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcchhhhcccCC
Q 007693 222 TGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMK 301 (593)
Q Consensus 222 n~l~~l~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~ 301 (593)
|.+++++..++|++|++++|.+..++.. .++
T Consensus 90 n~l~~l~~~~~L~~L~l~~n~l~~~~~~-------------------------------------------------~~~ 120 (317)
T 3o53_A 90 NYVQELLVGPSIETLHAANNNISRVSCS-------------------------------------------------RGQ 120 (317)
T ss_dssp SEEEEEEECTTCCEEECCSSCCSEEEEC-------------------------------------------------CCS
T ss_pred CccccccCCCCcCEEECCCCccCCcCcc-------------------------------------------------ccC
Confidence 5554444444444444444444433211 123
Q ss_pred CccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEE
Q 007693 302 ALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFID 381 (593)
Q Consensus 302 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~ 381 (593)
+|++|++++|.+++..+..+..+ ++|++|++++|.+++..+..+.+.+++|++|++++|.+++.. ....+++|++|+
T Consensus 121 ~L~~L~l~~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~ 197 (317)
T 3o53_A 121 GKKNIYLANNKITMLRDLDEGCR-SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLD 197 (317)
T ss_dssp SCEEEECCSSCCCSGGGBCTGGG-SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEE
T ss_pred CCCEEECCCCCCCCccchhhhcc-CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEE
Confidence 34444444444444333333333 556666666666665555544445677777777777776652 233578899999
Q ss_pred eeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCC-chhHHhhhcCCC
Q 007693 382 ISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT-DVSLHQLSSLSK 460 (593)
Q Consensus 382 Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~ 460 (593)
+++|++.+.++. +..+++|++|++++|.+++ +|..+..+++|+.|++++|.++ +..+..+..+++
T Consensus 198 Ls~N~l~~l~~~-------------~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~ 263 (317)
T 3o53_A 198 LSSNKLAFMGPE-------------FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263 (317)
T ss_dssp CCSSCCCEECGG-------------GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHH
T ss_pred CCCCcCCcchhh-------------hcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhcccc
Confidence 999998876554 7788999999999999987 5677888999999999999998 677888899999
Q ss_pred CcEEEecC-cccCcccc
Q 007693 461 LTNLSIRD-AVLTNSGL 476 (593)
Q Consensus 461 L~~L~L~~-n~l~~~~~ 476 (593)
|+.|++++ +.+++..+
T Consensus 264 L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 264 VQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp HHHHHHHHHHHHHSSSS
T ss_pred ceEEECCCchhccCCch
Confidence 99999985 44555433
No 58
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=1.5e-27 Score=235.09 Aligned_cols=241 Identities=16% Similarity=0.164 Sum_probs=140.8
Q ss_pred CCccEEEecCCCCCCh--hHHHHHhcCCCccEEEcCC-CCccCchHHHhhhCCCCCcEEecCCCCCCChhhHHhhcCCCC
Q 007693 65 HNAEAIELRGENSVDA--EWMAYLGAFRYLRSLNVAD-CRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSIST 141 (593)
Q Consensus 65 ~~L~~L~L~~~~~~~~--~~~~~~~~~~~L~~L~L~~-~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~~~~ 141 (593)
.++++|+|++|. +.+ .++..+.++++|++|++++ |. +....+..+.++++|++|++++| .++...+..+.++++
T Consensus 50 ~~l~~L~L~~~~-l~~~~~~~~~l~~l~~L~~L~L~~~n~-l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLN-LPKPYPIPSSLANLPYLNFLYIGGINN-LVGPIPPAIAKLTQLHYLYITHT-NVSGAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCC-CSSCEECCGGGGGCTTCSEEEEEEETT-EESCCCGGGGGCTTCSEEEEEEE-CCEEECCGGGGGCTT
T ss_pred ceEEEEECCCCC-ccCCcccChhHhCCCCCCeeeCCCCCc-ccccCChhHhcCCCCCEEECcCC-eeCCcCCHHHhCCCC
Confidence 357777777776 444 4556677777777777774 44 54445556667777777777776 455555566667777
Q ss_pred CcEEEccCCCCChhHHHHhcCCCCCCEEEcCCCCCChhhHHHhhcCC-CCCEEEccCCccCccchHhhcCCCCCCeeecc
Q 007693 142 LEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLT-KLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLA 220 (593)
Q Consensus 142 L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 220 (593)
|++|++++|.+++..+..++.+++|++|++++|.+.+..|..+..++ +|++|++++|.+++..+..+..++ |++|+++
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS 205 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECC
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECc
Confidence 77777777766655556666777777777777777666666666666 677777777777666666666654 6666666
Q ss_pred ccCCcC-----CCCCCCCcEEEcCCCcccchhcccCCCCCcceEeccCccccc-hhhHHhhhcCCCccEEeccCCCcchh
Q 007693 221 WTGVTK-----LPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFIN-EREAFLYIETSLLSFLDVSNSSLSRF 294 (593)
Q Consensus 221 ~n~l~~-----l~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~~L~~L~ls~n~l~~~ 294 (593)
+|.+++ +..+++|+.|++++|.++..++.+..+++|++|++++|.+.+ +|.. +..+++|++|++++|.+++.
T Consensus 206 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~--l~~l~~L~~L~Ls~N~l~~~ 283 (313)
T 1ogq_A 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG--LTQLKFLHSLNVSFNNLCGE 283 (313)
T ss_dssp SSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGG--GGGCTTCCEEECCSSEEEEE
T ss_pred CCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChH--HhcCcCCCEEECcCCccccc
Confidence 555442 234455555555555555433334444555555555555542 2222 22444444444444444422
Q ss_pred -hhcccCCCccEEEccCC
Q 007693 295 -CFLTQMKALEHLDLSSS 311 (593)
Q Consensus 295 -~~l~~~~~L~~L~L~~n 311 (593)
+....+++|+.+++++|
T Consensus 284 ip~~~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 284 IPQGGNLQRFDVSAYANN 301 (313)
T ss_dssp CCCSTTGGGSCGGGTCSS
T ss_pred CCCCccccccChHHhcCC
Confidence 32333444444444444
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=2.2e-26 Score=226.59 Aligned_cols=239 Identities=18% Similarity=0.243 Sum_probs=155.6
Q ss_pred CEEEccCCccCccchHhhcCCCCCCeeeccccCCcCCC-----CCCCCcEEEcCCCcccch---hcccCCCCCcceEecc
Q 007693 191 EYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSI---LEGNENKAPLAKISLA 262 (593)
Q Consensus 191 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~-----~l~~L~~L~l~~n~l~~l---~~~~~~~~~L~~L~l~ 262 (593)
+.++.+++.++.... .+ .+++++|++++|.++.++ .+++|++|++++|.+..+ +..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~~ip~-~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSVPT-GI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSCCS-CC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcccCCC-CC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 578888888775443 22 368999999999988754 678999999999999855 5666689999999999
Q ss_pred CccccchhhHHhhhcCCCccEEeccCCCcchhh---hcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCC
Q 007693 263 GTTFINEREAFLYIETSLLSFLDVSNSSLSRFC---FLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFS 339 (593)
Q Consensus 263 ~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~---~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 339 (593)
+|.+..++.. +..+++|++|++++|.++... .+..+++|++|++++|.+++..+..+..+ ++|++|++++|.++
T Consensus 87 ~n~i~~l~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 87 FNGVITMSSN--FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL-SSLEVLKMAGNSFQ 163 (306)
T ss_dssp SCSEEEEEEE--EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTC-TTCCEEECTTCEEG
T ss_pred CCccccChhh--cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccC-cCCCEEECCCCccc
Confidence 9999987765 458999999999999998773 57778888888888887765544444443 56666666666555
Q ss_pred C-chHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEec
Q 007693 340 S-AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNL 418 (593)
Q Consensus 340 ~-~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L 418 (593)
+ ..+..+ +.+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+. .+..+++|++|++
T Consensus 164 ~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~------------~~~~l~~L~~L~L 230 (306)
T 2z66_A 164 ENFLPDIF-TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF------------PYKCLNSLQVLDY 230 (306)
T ss_dssp GGEECSCC-TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG------------GGTTCTTCCEEEC
T ss_pred cccchhHH-hhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh------------hccCcccCCEeEC
Confidence 4 112111 3445555555555555544444444455555555555555444333 3444455555555
Q ss_pred CCCCcCCCccccccCCC-CCcEEecCCCCCC
Q 007693 419 EQTQVSDATLFPLSTFK-ELIHLSLRNASLT 448 (593)
Q Consensus 419 ~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~ 448 (593)
++|.+++..+..+..++ +|++|++++|.++
T Consensus 231 ~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 231 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp TTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred CCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 55555544444444442 4555555555443
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=5.4e-25 Score=234.60 Aligned_cols=243 Identities=19% Similarity=0.166 Sum_probs=144.1
Q ss_pred CCCCeeeccccCCcCCC-CCCCCcEEEcCCCcccchhcccCCCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCC
Q 007693 212 PRLSFLNLAWTGVTKLP-NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS 290 (593)
Q Consensus 212 ~~L~~L~l~~n~l~~l~-~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~ 290 (593)
++|+.|++++|.++.++ .+++|++|++++|.++.+|. .+++|++|++++|.+..++. .+++|+.|++++|.
T Consensus 61 ~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~-----~l~~L~~L~L~~N~ 132 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA-----LPSGLCKLWIFGNQ 132 (622)
T ss_dssp TTCSEEEECSCCCSCCCCCCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC-----CCTTCCEEECCSSC
T ss_pred CCCcEEEecCCCCCCCCCcCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC-----CCCCcCEEECCCCC
Confidence 34444444444444433 23445555555555554444 34555555555555555443 33555666666665
Q ss_pred cchhhhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHH
Q 007693 291 LSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISY 370 (593)
Q Consensus 291 l~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~ 370 (593)
++.++. .+++|++|++++|.+++.. ..+++|+.|++++|.+++.+ ..+++|+.|++++|.+++..
T Consensus 133 l~~lp~--~l~~L~~L~Ls~N~l~~l~-----~~~~~L~~L~L~~N~l~~l~-----~~~~~L~~L~Ls~N~l~~l~--- 197 (622)
T 3g06_A 133 LTSLPV--LPPGLQELSVSDNQLASLP-----ALPSELCKLWAYNNQLTSLP-----MLPSGLQELSVSDNQLASLP--- 197 (622)
T ss_dssp CSCCCC--CCTTCCEEECCSSCCSCCC-----CCCTTCCEEECCSSCCSCCC-----CCCTTCCEEECCSSCCSCCC---
T ss_pred CCcCCC--CCCCCCEEECcCCcCCCcC-----CccCCCCEEECCCCCCCCCc-----ccCCCCcEEECCCCCCCCCC---
Confidence 555432 2366666666666665422 12256777777777766644 34567777777777766532
Q ss_pred hhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCch
Q 007693 371 MSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDV 450 (593)
Q Consensus 371 l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 450 (593)
..+++|+.|++++|.+...+. .+++|+.|++++|.+++ +| ..+++|+.|++++|+|+.+
T Consensus 198 -~~~~~L~~L~L~~N~l~~l~~----------------~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~l 256 (622)
T 3g06_A 198 -TLPSELYKLWAYNNRLTSLPA----------------LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSL 256 (622)
T ss_dssp -CCCTTCCEEECCSSCCSSCCC----------------CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCC
T ss_pred -CccchhhEEECcCCcccccCC----------------CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcC
Confidence 134677777777777764332 13567777777777776 33 3456777777777777764
Q ss_pred hHHhhhcCCCCcEEEecCcccCcccccCccCCCCCceEecCCCccCCHHHHHHH
Q 007693 451 SLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQF 504 (593)
Q Consensus 451 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 504 (593)
.+ .+++|+.|++++|+|+.+ |..+..+++|+.|+|++|++ .+..+..+
T Consensus 257 p~----~~~~L~~L~Ls~N~L~~l-p~~l~~l~~L~~L~L~~N~l-~~~~~~~l 304 (622)
T 3g06_A 257 PM----LPSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNPL-SERTLQAL 304 (622)
T ss_dssp CC----CCTTCCEEECCSSCCCSC-CGGGGGSCTTCEEECCSCCC-CHHHHHHH
T ss_pred Cc----ccccCcEEeCCCCCCCcC-CHHHhhccccCEEEecCCCC-CCcCHHHH
Confidence 43 567777777777777754 55677777777777777776 55444444
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=5.2e-26 Score=224.80 Aligned_cols=246 Identities=17% Similarity=0.198 Sum_probs=203.7
Q ss_pred CcEEEcCCCcccchhcccC-CCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcchhhhcccCCCccEEEccCC
Q 007693 233 LECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSS 311 (593)
Q Consensus 233 L~~L~l~~n~l~~l~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~L~~n 311 (593)
++..+++.+.+...+..+. .+++|++|++++|.+..+++. .+..+++|++|++++|.+++...+..+++|++|++++|
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAA-DLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNN 90 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHH-HHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHH-HhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCC
Confidence 4455666777766555554 677899999999988886643 34588999999999999988766889999999999999
Q ss_pred CCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccc
Q 007693 312 MIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFI 391 (593)
Q Consensus 312 ~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~ 391 (593)
.+++.. .. ++|++|++++|.+++... ..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..
T Consensus 91 ~l~~l~-----~~-~~L~~L~l~~n~l~~~~~----~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 91 YVQELL-----VG-PSIETLHAANNNISRVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp EEEEEE-----EC-TTCCEEECCSSCCSEEEE----CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred cccccc-----CC-CCcCEEECCCCccCCcCc----cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 988644 22 899999999999988765 45789999999999999988778888999999999999999877
Q ss_pred cccccchhhhhhHHhh-ccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcc
Q 007693 392 QQVGAETDLVLSLTAL-QNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAV 470 (593)
Q Consensus 392 ~~~~~~~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 470 (593)
+. .+ ..+++|++|++++|.+++. .....+++|++|++++|+++++.+ .+..+++|+.|++++|+
T Consensus 161 ~~------------~~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~ 225 (317)
T 3o53_A 161 FA------------ELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNK 225 (317)
T ss_dssp GG------------GGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSC
T ss_pred HH------------HHhhccCcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCc
Confidence 66 34 5789999999999999985 233458999999999999998765 48899999999999999
Q ss_pred cCcccccCccCCCCCceEecCCCccCCHHHHHHHH
Q 007693 471 LTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFC 505 (593)
Q Consensus 471 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 505 (593)
++++ +..+..+++|+.|++++|++.|++...++.
T Consensus 226 l~~l-~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~ 259 (317)
T 3o53_A 226 LVLI-EKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (317)
T ss_dssp CCEE-CTTCCCCTTCCEEECTTCCCBHHHHHHHHH
T ss_pred ccch-hhHhhcCCCCCEEEccCCCccCcCHHHHHh
Confidence 9975 667888999999999999997676655553
No 62
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=2.1e-25 Score=224.28 Aligned_cols=284 Identities=18% Similarity=0.120 Sum_probs=171.0
Q ss_pred CCCCCcEEecCCCCCCChhhHHhhcCCCCCcEEEccCCCCChhHHHHhcCCCCCCEEEcCCCCCChhhHHHhhcCCCCCE
Q 007693 113 GMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEY 192 (593)
Q Consensus 113 ~l~~L~~L~L~~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 192 (593)
.|+.....+++++ .++.. +..+ .++|++|++++|.+++..+..|+.+++|++|++++|.+.+..+..|.++++|++
T Consensus 29 ~C~~~~~c~~~~~-~l~~i-P~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 29 SCDRNGICKGSSG-SLNSI-PSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp EECTTSEEECCST-TCSSC-CTTC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCeEeeCCCC-Ccccc-cccc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 4566666777776 44432 2222 247888888888887766666778888888888888887777777777888888
Q ss_pred EEccCCccCccchHhhcCCCCCCeeeccccCCcCCCCCCCCcEEEcCCCcccchhc--ccCCCCCcceEeccCcc-ccch
Q 007693 193 LDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILE--GNENKAPLAKISLAGTT-FINE 269 (593)
Q Consensus 193 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~l~~n~l~~l~~--~~~~~~~L~~L~l~~n~-~~~~ 269 (593)
|++++|.+++..+..+..+++|++|++++|.++. ++. .+..+++|++|++++|. +..+
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-------------------l~~~~~~~~l~~L~~L~l~~n~~~~~~ 165 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-------------------LGETSLFSHLTKLQILRVGNMDTFTKI 165 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-------------------SCSSCSCTTCTTCCEEEEEESSSCCEE
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-------------------cCchhhhccCCCCcEEECCCCcccccc
Confidence 8888888877666667766666666666555543 333 23345555555555552 3333
Q ss_pred hhHHhhhcCCCccEEeccCCCcchh--hhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHH
Q 007693 270 REAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILA 347 (593)
Q Consensus 270 ~~~~~~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 347 (593)
++. .+.++++|++|++++|.+.+. ..+..+++|++|++++|.++......+... ++|++|++++|.+++.....+.
T Consensus 166 ~~~-~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~ 243 (353)
T 2z80_A 166 QRK-DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVT-SSVECLELRDTDLDTFHFSELS 243 (353)
T ss_dssp CTT-TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHT-TTEEEEEEESCBCTTCCCC---
T ss_pred CHH-HccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhc-ccccEEECCCCccccccccccc
Confidence 221 233556666666666666554 456667777788887777765444333333 7777777777777664332110
Q ss_pred cCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCc
Q 007693 348 GHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT 427 (593)
Q Consensus 348 ~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 427 (593)
.....+.++.++++++.+.+..-. .-...+..+++|++|++++|+++...
T Consensus 244 ----------------------~~~~~~~l~~l~L~~~~l~~~~l~--------~l~~~l~~l~~L~~L~Ls~N~l~~i~ 293 (353)
T 2z80_A 244 ----------------------TGETNSLIKKFTFRNVKITDESLF--------QVMKLLNQISGLLELEFSRNQLKSVP 293 (353)
T ss_dssp -------------------------CCCCCCEEEEESCBCCHHHHH--------HHHHHHHTCTTCCEEECCSSCCCCCC
T ss_pred ----------------------cccccchhhccccccccccCcchh--------hhHHHHhcccCCCEEECCCCCCCccC
Confidence 011234445555555544431100 00014566677777777777777544
Q ss_pred cccccCCCCCcEEecCCCCCCchh
Q 007693 428 LFPLSTFKELIHLSLRNASLTDVS 451 (593)
Q Consensus 428 ~~~~~~l~~L~~L~L~~n~l~~~~ 451 (593)
...|..+++|++|++++|.+++..
T Consensus 294 ~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 294 DGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp TTTTTTCTTCCEEECCSSCBCCCH
T ss_pred HHHHhcCCCCCEEEeeCCCccCcC
Confidence 334567777777777777776643
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=2.7e-25 Score=236.90 Aligned_cols=267 Identities=18% Similarity=0.172 Sum_probs=143.3
Q ss_pred CCcEEecCCCCCCChhhHHhhcCCCCCcEEEccCCCCChhHHHHhcCCCCCCEEEcCCCCCChhhHHHhhcCCCCCEEEc
Q 007693 116 CLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDL 195 (593)
Q Consensus 116 ~L~~L~L~~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 195 (593)
++++|++++| .++. .+..+. ++|++|++++|.++..+. .+++|++|++++|+++.... .+++|++|++
T Consensus 41 ~l~~L~ls~n-~L~~-lp~~l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGES-GLTT-LPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSS-CCSC-CCSCCC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEEE
T ss_pred CCcEEEecCC-CcCc-cChhhC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEEC
Confidence 5777777776 3442 222222 566666666666654322 34556666666665554222 3455555555
Q ss_pred cCCccCccchHhhcCCCCCCeeeccccCCcCCCCCCCCcEEEcCCCcccchhcccCCCCCcceEeccCccccchhhHHhh
Q 007693 196 WGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLY 275 (593)
Q Consensus 196 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 275 (593)
++|.+++... .++ +|+.|++++|.++.+|.. +++|++|++++|.+..++.
T Consensus 109 s~N~l~~l~~----~l~-------------------~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~---- 158 (622)
T 3g06_A 109 FSNPLTHLPA----LPS-------------------GLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA---- 158 (622)
T ss_dssp CSCCCCCCCC----CCT-------------------TCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC----
T ss_pred cCCcCCCCCC----CCC-------------------CcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC----
Confidence 5555543222 233 444444444444444332 2444455555554444332
Q ss_pred hcCCCccEEeccCCCcchhhhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcE
Q 007693 276 IETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEI 355 (593)
Q Consensus 276 ~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~ 355 (593)
.+++|+.|++++|.++.++ ..+++|+.|++++|.+++... ..++|+.|++++|.++..+. .+++|++
T Consensus 159 -~~~~L~~L~L~~N~l~~l~--~~~~~L~~L~Ls~N~l~~l~~-----~~~~L~~L~L~~N~l~~l~~-----~~~~L~~ 225 (622)
T 3g06_A 159 -LPSELCKLWAYNNQLTSLP--MLPSGLQELSVSDNQLASLPT-----LPSELYKLWAYNNRLTSLPA-----LPSGLKE 225 (622)
T ss_dssp -CCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSSCCC-----CCTTCCE
T ss_pred -ccCCCCEEECCCCCCCCCc--ccCCCCcEEECCCCCCCCCCC-----ccchhhEEECcCCcccccCC-----CCCCCCE
Confidence 2244555555555555443 334556666666665554211 12566666666666654432 2456666
Q ss_pred EEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCC
Q 007693 356 LSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFK 435 (593)
Q Consensus 356 L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 435 (593)
|++++|.+++.. ..+++|+.|++++|.++..++ .+++|+.|+|++|.++. +|..+..++
T Consensus 226 L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~----------------~~~~L~~L~Ls~N~L~~-lp~~l~~l~ 284 (622)
T 3g06_A 226 LIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPM----------------LPSGLLSLSVYRNQLTR-LPESLIHLS 284 (622)
T ss_dssp EECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC----------------CCTTCCEEECCSSCCCS-CCGGGGGSC
T ss_pred EEccCCccCcCC----CCCCcCcEEECCCCCCCcCCc----------------ccccCcEEeCCCCCCCc-CCHHHhhcc
Confidence 666666666532 345667777777766654321 34566777777777664 455666777
Q ss_pred CCcEEecCCCCCCchhHHhhhcC
Q 007693 436 ELIHLSLRNASLTDVSLHQLSSL 458 (593)
Q Consensus 436 ~L~~L~L~~n~l~~~~~~~l~~l 458 (593)
+|+.|+|++|.+++..+..+..+
T Consensus 285 ~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 285 SETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp TTCEEECCSCCCCHHHHHHHHHH
T ss_pred ccCEEEecCCCCCCcCHHHHHhc
Confidence 77777777777776666655443
No 64
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=2e-25 Score=221.31 Aligned_cols=232 Identities=16% Similarity=0.146 Sum_probs=173.7
Q ss_pred CCCcEEEcCCCcccchhcccCCCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcchh-hhcccCCCccEEEcc
Q 007693 231 SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKALEHLDLS 309 (593)
Q Consensus 231 ~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~l~~~~~L~~L~L~ 309 (593)
+.++.|++++|.++.+|+.++.+++|++|++++|.+..+|..+ ..+++|++|++++|.++.+ ..+..+++|++|+++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~--~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTM--QQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCG--GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHH--hccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 4566666667777667666666777777777777776555433 3667777777777776655 456677777777777
Q ss_pred CCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCc
Q 007693 310 SSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKG 389 (593)
Q Consensus 310 ~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~ 389 (593)
+|.+.+..+. .+....+.+. ++.+++|++|++++|.++. .|..+..+++|++|++++|.+.+
T Consensus 159 ~n~~~~~~p~-------~~~~~~~~~~----------~~~l~~L~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~N~l~~ 220 (328)
T 4fcg_A 159 ACPELTELPE-------PLASTDASGE----------HQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSA 220 (328)
T ss_dssp EETTCCCCCS-------CSEEEC-CCC----------EEESTTCCEEEEEEECCCC-CCGGGGGCTTCCEEEEESSCCCC
T ss_pred CCCCccccCh-------hHhhccchhh----------hccCCCCCEEECcCCCcCc-chHhhcCCCCCCEEEccCCCCCc
Confidence 7665543322 2222222111 1457888888888888883 45568888999999999999887
Q ss_pred cccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCc
Q 007693 390 FIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDA 469 (593)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 469 (593)
.++. +..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|
T Consensus 221 l~~~-------------l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n 287 (328)
T 4fcg_A 221 LGPA-------------IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287 (328)
T ss_dssp CCGG-------------GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTC
T ss_pred Cchh-------------hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCC
Confidence 5544 788889999999998888888888889999999999998888888888889999999999999
Q ss_pred ccCcccccCccCCCCCceEecCCCcc
Q 007693 470 VLTNSGLGSFKPPRSLKLLDLHGGWL 495 (593)
Q Consensus 470 ~l~~~~~~~~~~~~~L~~L~l~~n~~ 495 (593)
.+.+..|..+..+++|+.+++..+.+
T Consensus 288 ~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 288 VNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp TTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred CchhhccHHHhhccCceEEeCCHHHH
Confidence 98888888898899999999888766
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.92 E-value=5.7e-25 Score=214.10 Aligned_cols=222 Identities=20% Similarity=0.277 Sum_probs=158.6
Q ss_pred EEEcCCCcccchhcccCCCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcchh--hhcccCCCccEEEccCCC
Q 007693 235 CLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSM 312 (593)
Q Consensus 235 ~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~L~~n~ 312 (593)
.++.+++.++.+|..+ .++|++|++++|.+..++.. .+..+++|++|++++|.++++ ..+..+++|++|++++|.
T Consensus 15 ~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 15 TTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAA-SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp EEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred EEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHH-HcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 3444444444444322 23455555555555444332 123555666666666655554 345667777777777775
Q ss_pred -CChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccc
Q 007693 313 -IGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFI 391 (593)
Q Consensus 313 -l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~ 391 (593)
+++..+..+..+ ++|++|++++|.+++..+..+ +.+++|++|++++|.+++..+..+..+++|++|++++|.+.+..
T Consensus 92 ~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 92 QLRSVDPATFHGL-GRLHTLHLDRCGLQELGPGLF-RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp TCCCCCTTTTTTC-TTCCEEECTTSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CccccCHHHhcCC-cCCCEEECCCCcCCEECHhHh-hCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 665545555555 778888888888777665554 56888888888888888777667788889999999999888776
Q ss_pred cccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCccc
Q 007693 392 QQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVL 471 (593)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 471 (593)
+. .+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|++
T Consensus 170 ~~------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 170 ER------------AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp TT------------TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred HH------------HhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 65 578888999999999999887788888889999999999999888888888899999999999988
Q ss_pred Cc
Q 007693 472 TN 473 (593)
Q Consensus 472 ~~ 473 (593)
..
T Consensus 238 ~c 239 (285)
T 1ozn_A 238 VC 239 (285)
T ss_dssp EC
T ss_pred cC
Confidence 75
No 66
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=9e-25 Score=226.36 Aligned_cols=241 Identities=18% Similarity=0.240 Sum_probs=178.9
Q ss_pred CeeeccccCCcCCCC--CCCCcEEEcCCCcccchhc-ccCCCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCc
Q 007693 215 SFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSILE-GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSL 291 (593)
Q Consensus 215 ~~L~l~~n~l~~l~~--l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l 291 (593)
..++..+..++.+|. .++++.|++++|.+..++. .+..+++|++|++++|.+..++.. .+.++++|++|++++|.+
T Consensus 46 ~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~-~~~~l~~L~~L~L~~n~l 124 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIG-AFNGLANLNTLELFDNRL 124 (440)
T ss_dssp CEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGG-GGTTCSSCCEEECCSSCC
T ss_pred CEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChh-hccCCccCCEEECCCCcC
Confidence 344444555555542 3567777777777776553 444777777777777777765543 345677888888888877
Q ss_pred chh--hhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCC-CCCchHHHHHcCCCCCcEEEccCCCCChHHH
Q 007693 292 SRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTR-FSSAGVGILAGHLPNLEILSLSGTQIDDYAI 368 (593)
Q Consensus 292 ~~~--~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~ 368 (593)
+.+ ..+..+++|++|++++|.+++.....+..+ ++|++|++++|. +.......+ ..+++|++|++++|.++...
T Consensus 125 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l-~~L~~L~l~~~~~l~~i~~~~~-~~l~~L~~L~L~~n~l~~~~- 201 (440)
T 3zyj_A 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRI-PSLRRLDLGELKRLSYISEGAF-EGLSNLRYLNLAMCNLREIP- 201 (440)
T ss_dssp SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTC-TTCCEEECCCCTTCCEECTTTT-TTCSSCCEEECTTSCCSSCC-
T ss_pred CeeCHhHhhccccCceeeCCCCcccccCHHHhhhC-cccCEeCCCCCCCcceeCcchh-hcccccCeecCCCCcCcccc-
Confidence 776 357778888888888888876655555555 788888888754 444433333 56888888888888887643
Q ss_pred HHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCC
Q 007693 369 SYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT 448 (593)
Q Consensus 369 ~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 448 (593)
.+..+++|+.|+|++|.+.+..+. .|..+++|++|++++|.+++..+..|..+++|+.|+|++|+++
T Consensus 202 -~~~~l~~L~~L~Ls~N~l~~~~~~------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 268 (440)
T 3zyj_A 202 -NLTPLIKLDELDLSGNHLSAIRPG------------SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268 (440)
T ss_dssp -CCTTCSSCCEEECTTSCCCEECTT------------TTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC
T ss_pred -ccCCCcccCEEECCCCccCccChh------------hhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC
Confidence 367788899999999988887776 6888888999999999888888888888889999999999988
Q ss_pred chhHHhhhcCCCCcEEEecCcccC
Q 007693 449 DVSLHQLSSLSKLTNLSIRDAVLT 472 (593)
Q Consensus 449 ~~~~~~l~~l~~L~~L~L~~n~l~ 472 (593)
++.+..|..+++|+.|+|++|++.
T Consensus 269 ~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 269 LLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCCTTTTSSCTTCCEEECCSSCEE
T ss_pred ccChhHhccccCCCEEEcCCCCcc
Confidence 888778888889999999988864
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=5.1e-25 Score=230.24 Aligned_cols=226 Identities=19% Similarity=0.211 Sum_probs=182.9
Q ss_pred CCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcchhhhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEE
Q 007693 252 NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNL 331 (593)
Q Consensus 252 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L 331 (593)
.+++|++|++++|.+..+++. .+..+++|++|++++|.+++...+..+++|++|++++|.+++..+ . ++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~-----~-~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAA-DLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV-----G-PSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGG-GGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEE-----C-TTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHH-HHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCC-----C-CCcCEE
Confidence 344677777777777665442 245777888888888887766557788888888888888876432 2 789999
Q ss_pred EcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhc-cC
Q 007693 332 NLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQ-NL 410 (593)
Q Consensus 332 ~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~-~l 410 (593)
++++|.+++..+ ..+++|++|++++|.+++..+..++.+++|+.|++++|.+.+..+. .+. .+
T Consensus 105 ~L~~N~l~~~~~----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~------------~l~~~l 168 (487)
T 3oja_A 105 HAANNNISRVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA------------ELAASS 168 (487)
T ss_dssp ECCSSCCCCEEE----CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG------------GGGGGT
T ss_pred ECcCCcCCCCCc----cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChH------------HHhhhC
Confidence 999999988766 4578999999999999998888888999999999999999987776 454 78
Q ss_pred CccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcccccCccCCCCCceEec
Q 007693 411 NHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDL 490 (593)
Q Consensus 411 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l 490 (593)
++|++|+|++|.+++.. .+..+++|+.|+|++|.++++++ .+..+++|+.|++++|.++++ |..+..+++|+.|++
T Consensus 169 ~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~l 244 (487)
T 3oja_A 169 DTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDL 244 (487)
T ss_dssp TTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEEC
T ss_pred CcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCccc-chhhccCCCCCEEEc
Confidence 99999999999999853 34468999999999999999766 488999999999999999985 566888899999999
Q ss_pred CCCccCCHHHHHHH
Q 007693 491 HGGWLLTEDAILQF 504 (593)
Q Consensus 491 ~~n~~~~~~~~~~~ 504 (593)
++|++.|++.+.++
T Consensus 245 ~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 245 RGNGFHCGTLRDFF 258 (487)
T ss_dssp TTCCBCHHHHHHHH
T ss_pred CCCCCcCcchHHHH
Confidence 99999777665544
No 68
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=1.1e-24 Score=226.67 Aligned_cols=240 Identities=18% Similarity=0.225 Sum_probs=168.4
Q ss_pred eeeccccCCcCCCC--CCCCcEEEcCCCcccchh-cccCCCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcc
Q 007693 216 FLNLAWTGVTKLPN--ISSLECLNLSNCTIDSIL-EGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLS 292 (593)
Q Consensus 216 ~L~l~~n~l~~l~~--l~~L~~L~l~~n~l~~l~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~ 292 (593)
.++.++..++.+|. .+++++|++++|.++.++ ..+..+++|++|++++|.+..+++. .+.++++|++|++++|.++
T Consensus 58 ~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~ 136 (452)
T 3zyi_A 58 KVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVG-AFNGLASLNTLELFDNWLT 136 (452)
T ss_dssp EEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCS
T ss_pred EEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChh-hccCcccCCEEECCCCcCC
Confidence 34444444444442 246666777777666553 3344677777777777776665432 2446677777777777776
Q ss_pred hh--hhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCC-CCCCchHHHHHcCCCCCcEEEccCCCCChHHHH
Q 007693 293 RF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNT-RFSSAGVGILAGHLPNLEILSLSGTQIDDYAIS 369 (593)
Q Consensus 293 ~~--~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~ 369 (593)
.+ ..+..+++|++|++++|.+++.....+..+ ++|++|++++| .+.......+ ..+++|++|++++|.+++..
T Consensus 137 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~l~~~~~l~~i~~~~~-~~l~~L~~L~L~~n~l~~~~-- 212 (452)
T 3zyi_A 137 VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRV-PSLMRLDLGELKKLEYISEGAF-EGLFNLKYLNLGMCNIKDMP-- 212 (452)
T ss_dssp BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTC-TTCCEEECCCCTTCCEECTTTT-TTCTTCCEEECTTSCCSSCC--
T ss_pred ccChhhhcccCCCCEEECCCCCcceeCHhHHhcC-CcccEEeCCCCCCccccChhhc-cCCCCCCEEECCCCcccccc--
Confidence 66 346677777777777777776555455554 77888888774 3444433333 56788888888888877652
Q ss_pred HhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCc
Q 007693 370 YMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTD 449 (593)
Q Consensus 370 ~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 449 (593)
.+..+++|+.|++++|.+.+..+. .|.++++|+.|++++|.+++..+..|..+++|+.|+|++|++++
T Consensus 213 ~~~~l~~L~~L~Ls~N~l~~~~~~------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 280 (452)
T 3zyi_A 213 NLTPLVGLEELEMSGNHFPEIRPG------------SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS 280 (452)
T ss_dssp CCTTCTTCCEEECTTSCCSEECGG------------GGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred cccccccccEEECcCCcCcccCcc------------cccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCc
Confidence 466788888888888888877776 68888888888888888888777788888888888888888888
Q ss_pred hhHHhhhcCCCCcEEEecCcccC
Q 007693 450 VSLHQLSSLSKLTNLSIRDAVLT 472 (593)
Q Consensus 450 ~~~~~l~~l~~L~~L~L~~n~l~ 472 (593)
+.+..|..+++|+.|++++|++.
T Consensus 281 ~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 281 LPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CCTTSSTTCTTCCEEECCSSCEE
T ss_pred cChHHhccccCCCEEEccCCCcC
Confidence 77777788888888888888765
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=5e-26 Score=224.38 Aligned_cols=247 Identities=19% Similarity=0.125 Sum_probs=187.7
Q ss_pred CCCcEEEcCCCcccchhcccCCCCCcceEeccCccccc--hhhHH-----hhhcCCCccEEeccCCCcchh--hhc--cc
Q 007693 231 SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFIN--EREAF-----LYIETSLLSFLDVSNSSLSRF--CFL--TQ 299 (593)
Q Consensus 231 ~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~~~~--~~~~~-----~~~~~~~L~~L~ls~n~l~~~--~~l--~~ 299 (593)
++|+.|++++|.+ .+|..+... |+.|++++|.+.. ++... .+.++++|++|++++|.+++. ..+ ..
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred CCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 4555666666666 555544432 6777777776643 22211 223578899999999988854 333 78
Q ss_pred CCCccEEEccCCCCChhHHHHHHhc----cCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChH--HHHHh--
Q 007693 300 MKALEHLDLSSSMIGDDSVEMVACV----GANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDY--AISYM-- 371 (593)
Q Consensus 300 ~~~L~~L~L~~n~l~~~~~~~~~~~----~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~--~~~~l-- 371 (593)
+++|++|++++|.+++. +..+... .++|++|++++|.+++..+..+ +.+++|++|++++|++.+. .+..+
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV-RVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC-CCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh-ccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 89999999999999876 4555443 2799999999999998887666 6799999999999998875 33444
Q ss_pred hcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCcc-ccccCCCCCcEEecCCCCCCch
Q 007693 372 SMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATL-FPLSTFKELIHLSLRNASLTDV 450 (593)
Q Consensus 372 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~ 450 (593)
..+++|++|++++|++.+.... ....+..+++|++|++++|.+++..+ ..+..+++|++|++++|+++.
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~---------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~- 267 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGV---------CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ- 267 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHH---------HHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS-
T ss_pred ccCCCCCEEECCCCcCcchHHH---------HHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccCh-
Confidence 7899999999999999843221 01245788999999999999998664 456678999999999999995
Q ss_pred hHHhhhcCCCCcEEEecCcccCcccccCccCCCCCceEecCCCccC
Q 007693 451 SLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLL 496 (593)
Q Consensus 451 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~ 496 (593)
+|..+. ++|+.|++++|+|++. +. +..+++|++|++++|++.
T Consensus 268 ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 268 VPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred hhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 454554 8999999999999988 44 888999999999999983
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=8.9e-26 Score=235.97 Aligned_cols=235 Identities=20% Similarity=0.202 Sum_probs=149.0
Q ss_pred CCCEEEcCCCCCChhhHHHhhcCCCCCEEEccCCccCccchHhhcCCCCCCeeeccccCCcCCCCCCCCcEEEcCCCccc
Q 007693 165 NLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTID 244 (593)
Q Consensus 165 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~l~~n~l~ 244 (593)
+|++|++++|.+.+..+..|..+++|++|++++|.+++..+ +..+++|++|++++|.+++++..++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~------------ 100 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPS------------ 100 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTT------------
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCC------------
Confidence 56666666666666555566666666666666666654433 4444444444444444333333333
Q ss_pred chhcccCCCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcchhhhcccCCCccEEEccCCCCChhHHHHHHhc
Q 007693 245 SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACV 324 (593)
Q Consensus 245 ~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~ 324 (593)
|++|++++|.+..++. ..+++|++|++++|.+++..+..+..+
T Consensus 101 -----------L~~L~L~~N~l~~~~~--------------------------~~l~~L~~L~L~~N~l~~~~~~~~~~l 143 (487)
T 3oja_A 101 -----------IETLHAANNNISRVSC--------------------------SRGQGKKNIYLANNKITMLRDLDEGCR 143 (487)
T ss_dssp -----------CCEEECCSSCCCCEEE--------------------------CCCSSCEEEECCSSCCCSGGGBCGGGG
T ss_pred -----------cCEEECcCCcCCCCCc--------------------------cccCCCCEEECCCCCCCCCCchhhcCC
Confidence 3333333333333221 123445555555555554444334333
Q ss_pred cCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhH
Q 007693 325 GANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSL 404 (593)
Q Consensus 325 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~ 404 (593)
++|++|++++|.+++..+..+.+.+++|++|++++|.+++.. .+..+++|+.|+|++|.+++.++.
T Consensus 144 -~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~----------- 209 (487)
T 3oja_A 144 -SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGPE----------- 209 (487)
T ss_dssp -SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECGG-----------
T ss_pred -CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCCCCHh-----------
Confidence 666666666666666555555445677777777777777652 234578888888888888876654
Q ss_pred HhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCC-chhHHhhhcCCCCcEEEec
Q 007693 405 TALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT-DVSLHQLSSLSKLTNLSIR 467 (593)
Q Consensus 405 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~ 467 (593)
+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+. +..|..+..++.|+.++++
T Consensus 210 --~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 210 --FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp --GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred --HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 7788889999999999887 5677888899999999999988 5667778888888888886
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=2e-25 Score=216.19 Aligned_cols=215 Identities=20% Similarity=0.209 Sum_probs=168.6
Q ss_pred CCccEEeccCCCcchh--hhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEE
Q 007693 279 SLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL 356 (593)
Q Consensus 279 ~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L 356 (593)
+++++|++++|.++.+ ..+..+++|++|++++|.+++..+..+..+ ++|++|++++|.+++..+..+ +.+++|++|
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L 105 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL-SHLSTLILTGNPIQSLALGAF-SGLSSLQKL 105 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTC-TTCCEEECTTCCCCEECTTTT-TTCTTCCEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCC-cCCCEEECCCCccCccChhhh-cCCccccEE
Confidence 4566666666666655 256667777777777777776555555555 778888888888777665555 568889999
Q ss_pred EccCCCCChHHHHHhhcCCCCCEEEeeCCccCccc-cccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCC
Q 007693 357 SLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFI-QQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFK 435 (593)
Q Consensus 357 ~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~-~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 435 (593)
++++|.+.+..+..+..+++|++|++++|.+.+.. +. .+..+++|++|++++|++++..+..+..++
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 173 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE------------YFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG------------GGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCccceecCch------------hhccCCCCCEEECCCCCCCcCCHHHhhhhh
Confidence 99998888776666888999999999999988743 55 588999999999999999987777777777
Q ss_pred CCc----EEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcccccCccCCCCCceEecCCCccCCHHH-HHHHHhhC
Q 007693 436 ELI----HLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDA-ILQFCKMH 508 (593)
Q Consensus 436 ~L~----~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~ 508 (593)
+|+ .|++++|+++++.+..+. ..+|+.|++++|++++.++..+..+++|+.|++++|++.|+|. +.++..|.
T Consensus 174 ~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l~~~~ 250 (276)
T 2z62_A 174 QMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 250 (276)
T ss_dssp TCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTHHHHHHH
T ss_pred hccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchHHHHHHH
Confidence 777 899999999987665554 4589999999999999888888889999999999999999885 55554443
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=1.3e-24 Score=209.66 Aligned_cols=213 Identities=20% Similarity=0.265 Sum_probs=168.3
Q ss_pred ccEEeccCCCcchhhhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccC
Q 007693 281 LSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG 360 (593)
Q Consensus 281 L~~L~ls~n~l~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~ 360 (593)
.+.++++++.++.++.- -.+++++|++++|.+++..+..+..+ ++|++|++++|.++......+ +.+++|++|++++
T Consensus 18 ~~~l~~~~~~l~~ip~~-~~~~l~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~i~~~~~-~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSN-IPADTKKLDLQSNKLSSLPSKAFHRL-TKLRLLYLNDNKLQTLPAGIF-KELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCSCCCTTSSSSC-TTCCEEECCSSCCSCCCTTTT-SSCTTCCEEECCS
T ss_pred CCEEEccCCCCCccCCC-CCCCCCEEECcCCCCCeeCHHHhcCC-CCCCEEECCCCccCeeChhhh-cCCCCCCEEECCC
Confidence 44555555555544221 12456666666666665544444444 677777777777776555444 5688899999999
Q ss_pred CCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEE
Q 007693 361 TQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHL 440 (593)
Q Consensus 361 n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 440 (593)
|.+++..+..+..+++|++|++++|.+.+..+. .|..+++|++|++++|.+++..+..|..+++|++|
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 162 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPR------------VFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKEL 162 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTT------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHH------------HhCcCcCCCEEECCCCcCCccCHhHccCCccccee
Confidence 988887777788899999999999999988777 68899999999999999999777778999999999
Q ss_pred ecCCCCCCchhHHhhhcCCCCcEEEecCcccCcccccCccCCCCCceEecCCCccCCHHH-HHHHHhhC
Q 007693 441 SLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDA-ILQFCKMH 508 (593)
Q Consensus 441 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~ 508 (593)
++++|+++++.+..|..+++|+.|++++|++++.++..+..+++|+.|++++|++.|+|. +.++..|+
T Consensus 163 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~l 231 (270)
T 2o6q_A 163 RLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWL 231 (270)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSSSHHHHHHH
T ss_pred EecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCccHHHHHHHH
Confidence 999999999888889999999999999999999888889899999999999999999875 44444443
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=5.7e-26 Score=223.94 Aligned_cols=247 Identities=19% Similarity=0.193 Sum_probs=163.5
Q ss_pred hhcCCCCCEEEccCCccCccchHhhcCCCCCCeeeccccCCcC--CC-----------CCCCCcEEEcCCCccc-chhcc
Q 007693 184 LQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTK--LP-----------NISSLECLNLSNCTID-SILEG 249 (593)
Q Consensus 184 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--l~-----------~l~~L~~L~l~~n~l~-~l~~~ 249 (593)
++..++|+.|++++|.+ ..|..+... |+.|++++|.++. ++ .+++|++|++++|.++ .+|..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 34566788888888888 444544433 7777888877653 22 4677777777777777 45555
Q ss_pred c--CCCCCcceEeccCccccchhhHHhhhcC-----CCccEEeccCCCcchh--hhcccCCCccEEEccCCCCChhHHHH
Q 007693 250 N--ENKAPLAKISLAGTTFINEREAFLYIET-----SLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEM 320 (593)
Q Consensus 250 ~--~~~~~L~~L~l~~n~~~~~~~~~~~~~~-----~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~L~~n~l~~~~~~~ 320 (593)
+ ..+++|++|++++|.+.+.+..+. .+ ++|++|++++|.+.++ ..+..+++|++|++++|.+.+....
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~- 191 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATRDAWLA--ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL- 191 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSSSSHHH--HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHH-
T ss_pred HHHhcCCCccEEEccCCCCcchhHHHH--HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHH-
Confidence 4 467777777777777766543221 22 5555555555555444 2344445555555555544332110
Q ss_pred HHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCC---hHHHHHhhcCCCCCEEEeeCCccCccccccccc
Q 007693 321 VACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQID---DYAISYMSMMPSLKFIDISNTDIKGFIQQVGAE 397 (593)
Q Consensus 321 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~---~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~ 397 (593)
.....++.+++|++|++++|.++ ......+..+++|++|++++|.+.+..+.
T Consensus 192 ---------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---- 246 (312)
T 1wwl_A 192 ---------------------ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA---- 246 (312)
T ss_dssp ---------------------HHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC----
T ss_pred ---------------------HHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch----
Confidence 00111145778888888888887 33334456788999999999988876643
Q ss_pred hhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcc
Q 007693 398 TDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS 474 (593)
Q Consensus 398 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 474 (593)
..+..+++|++|++++|.++. +|..+. ++|++|++++|++++. |. +..+++|++|++++|++++.
T Consensus 247 -------~~~~~l~~L~~L~Ls~N~l~~-ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 247 -------PSCDWPSQLNSLNLSFTGLKQ-VPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp -------SCCCCCTTCCEEECTTSCCSS-CCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred -------hhhhhcCCCCEEECCCCccCh-hhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 136677899999999999985 566655 7899999999999887 43 88899999999999998864
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=3.2e-24 Score=208.61 Aligned_cols=213 Identities=24% Similarity=0.258 Sum_probs=165.0
Q ss_pred CCCccEEeccCCCcchhhhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEE
Q 007693 278 TSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILS 357 (593)
Q Consensus 278 ~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ 357 (593)
+++++.++++++.++.++.- ..+.++.|++++|.+++..+..+..+ ++|++|++++|.+++.... +.+++|++|+
T Consensus 9 l~~l~~l~~~~~~l~~ip~~-~~~~l~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~---~~l~~L~~L~ 83 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPD-LPKDTTILHLSENLLYTFSLATLMPY-TRLTQLNLDRAELTKLQVD---GTLPVLGTLD 83 (290)
T ss_dssp STTCCEEECTTSCCSSCCSC-CCTTCCEEECTTSCCSEEEGGGGTTC-TTCCEEECTTSCCCEEECC---SCCTTCCEEE
T ss_pred cCCccEEECCCCCCCcCCCC-CCCCCCEEEcCCCcCCccCHHHhhcC-CCCCEEECCCCccCcccCC---CCCCcCCEEE
Confidence 34444555555544444211 12456666666666665555555554 6677777777766665442 4678888899
Q ss_pred ccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCC
Q 007693 358 LSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKEL 437 (593)
Q Consensus 358 l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 437 (593)
+++|.++.. +..+..+++|++|++++|++++..+. .|..+++|++|+|++|++++..+..|..+++|
T Consensus 84 Ls~N~l~~l-~~~~~~l~~L~~L~l~~N~l~~l~~~------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 150 (290)
T 1p9a_G 84 LSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLG------------ALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150 (290)
T ss_dssp CCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSS------------TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred CCCCcCCcC-chhhccCCCCCEEECCCCcCcccCHH------------HHcCCCCCCEEECCCCCCCccChhhcccccCC
Confidence 988888753 34567899999999999999988777 68999999999999999999888888999999
Q ss_pred cEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcccccCccCCCCCceEecCCCccCCHHHHHHHHhhCC
Q 007693 438 IHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHP 509 (593)
Q Consensus 438 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 509 (593)
+.|+|++|+++.+.+..|..+++|+.|++++|+++.+ +..+...++|+.|++++|++.|+|.+.++..|+.
T Consensus 151 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~Np~~C~c~~~~l~~wl~ 221 (290)
T 1p9a_G 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQ 221 (290)
T ss_dssp CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCCBCCSGGGHHHHHHHH
T ss_pred CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCcc-ChhhcccccCCeEEeCCCCccCcCccHHHHHHHH
Confidence 9999999999998887889999999999999999976 5556667899999999999999998888866653
No 75
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=4.5e-24 Score=211.51 Aligned_cols=233 Identities=16% Similarity=0.172 Sum_probs=145.5
Q ss_pred CCCCCEEEccCCccCccchHhhcCCCCCCeeeccccCCcCCC----CCCCCcEEEcCCCcccchhcccCCCCCcceEecc
Q 007693 187 LTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP----NISSLECLNLSNCTIDSILEGNENKAPLAKISLA 262 (593)
Q Consensus 187 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~----~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~ 262 (593)
.++++.|++++|.++ ..|..+..+++|++|++++|.++.++ .+++|++|++++|.+..+|..+..+++|++|+++
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 467778888777776 34444555666666666655555433 3445555555555555444444444444444444
Q ss_pred CccccchhhHHhhhcCCCccEEeccCCCcchhhhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCch
Q 007693 263 GTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAG 342 (593)
Q Consensus 263 ~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 342 (593)
+|.+.+..+. .+....+. ..+..+ ++|++|++++|.++..+
T Consensus 159 ~n~~~~~~p~-------~~~~~~~~-------~~~~~l-------------------------~~L~~L~L~~n~l~~lp 199 (328)
T 4fcg_A 159 ACPELTELPE-------PLASTDAS-------GEHQGL-------------------------VNLQSLRLEWTGIRSLP 199 (328)
T ss_dssp EETTCCCCCS-------CSEEEC-C-------CCEEES-------------------------TTCCEEEEEEECCCCCC
T ss_pred CCCCccccCh-------hHhhccch-------hhhccC-------------------------CCCCEEECcCCCcCcch
Confidence 4333221110 00000000 112234 44555555555554332
Q ss_pred HHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCC
Q 007693 343 VGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQ 422 (593)
Q Consensus 343 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~ 422 (593)
. .+ +.+++|++|++++|.+++..+ .+..+++|++|++++|++.+..|. .+..+++|++|++++|.
T Consensus 200 ~-~l-~~l~~L~~L~L~~N~l~~l~~-~l~~l~~L~~L~Ls~n~~~~~~p~------------~~~~l~~L~~L~L~~n~ 264 (328)
T 4fcg_A 200 A-SI-ANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNYPP------------IFGGRAPLKRLILKDCS 264 (328)
T ss_dssp G-GG-GGCTTCCEEEEESSCCCCCCG-GGGGCTTCCEEECTTCTTCCBCCC------------CTTCCCCCCEEECTTCT
T ss_pred H-hh-cCCCCCCEEEccCCCCCcCch-hhccCCCCCEEECcCCcchhhhHH------------HhcCCCCCCEEECCCCC
Confidence 2 22 456777777777777775433 467788888888888888777776 57888888888888888
Q ss_pred cCCCccccccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcc
Q 007693 423 VSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS 474 (593)
Q Consensus 423 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 474 (593)
+.+.+|..+..+++|++|+|++|.+.+.+|..+..+++|+.+++..+.+...
T Consensus 265 ~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l 316 (328)
T 4fcg_A 265 NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQL 316 (328)
T ss_dssp TCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC-
T ss_pred chhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHH
Confidence 8888888888888888888888888888888888888888888887776554
No 76
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=5.9e-23 Score=205.01 Aligned_cols=235 Identities=19% Similarity=0.228 Sum_probs=172.1
Q ss_pred CCccEEeccCCCcchh-hhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEE
Q 007693 279 SLLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILS 357 (593)
Q Consensus 279 ~~L~~L~ls~n~l~~~-~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ 357 (593)
+.++.+++++|.+.+. ..+..+++|++|++++|.+++.........+++|++|++++|.+++..+..+ +.+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l-~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL-AKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHH-TTCTTCSEEE
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHH-hcCCCCCEEE
Confidence 6677777777776665 4455678888888888887766333333334888888888888777766666 4588888888
Q ss_pred ccCC-CCChH-HHHHhhcCCCCCEEEeeCC-ccCcc-ccccccchhhhhhHHhhccCC-ccCEEecCCC--CcC-CCccc
Q 007693 358 LSGT-QIDDY-AISYMSMMPSLKFIDISNT-DIKGF-IQQVGAETDLVLSLTALQNLN-HLERLNLEQT--QVS-DATLF 429 (593)
Q Consensus 358 l~~n-~i~~~-~~~~l~~~~~L~~L~Ls~n-~i~~~-~~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~n--~l~-~~~~~ 429 (593)
+++| .+++. .+..+..+++|++|++++| .+++. .+. .+..++ +|++|++++| .++ +.++.
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~------------~~~~l~~~L~~L~l~~~~~~~~~~~l~~ 216 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV------------AVAHVSETITQLNLSGYRKNLQKSDLST 216 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH------------HHHHSCTTCCEEECCSCGGGSCHHHHHH
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH------------HHHhcccCCCEEEeCCCcccCCHHHHHH
Confidence 8888 67764 4555677888888888888 77653 232 467788 8888888888 455 33455
Q ss_pred cccCCCCCcEEecCCCC-CCchhHHhhhcCCCCcEEEecCc-ccCcccccCccCCCCCceEecCCCccCCHHHHHHHHhh
Q 007693 430 PLSTFKELIHLSLRNAS-LTDVSLHQLSSLSKLTNLSIRDA-VLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKM 507 (593)
Q Consensus 430 ~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 507 (593)
.+..+++|++|++++|. +++..+..+..+++|+.|++++| .++......+..+++|+.|++++| +.+..+..+...
T Consensus 217 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~--i~~~~~~~l~~~ 294 (336)
T 2ast_B 217 LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI--VPDGTLQLLKEA 294 (336)
T ss_dssp HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS--SCTTCHHHHHHH
T ss_pred HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc--cCHHHHHHHHhh
Confidence 66778888888888888 77767778888888888888888 454444446777889999999988 477777777777
Q ss_pred CCcEEEEeeeccccCCCCCCCCCCCCCcchh
Q 007693 508 HPRIEVWHELSVICPSDQIGSNGPSPSRTSL 538 (593)
Q Consensus 508 ~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~ 538 (593)
++.+++. .|.+.+..|..++.
T Consensus 295 l~~L~l~----------~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 295 LPHLQIN----------CSHFTTIARPTIGN 315 (336)
T ss_dssp STTSEES----------CCCSCCTTCSSCSS
T ss_pred CcceEEe----------cccCccccCCcccc
Confidence 8888765 66777878877665
No 77
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=4.9e-23 Score=209.58 Aligned_cols=254 Identities=17% Similarity=0.116 Sum_probs=151.7
Q ss_pred HHHHHhcCCCccEEEcCCCCccCchHHHh----hhCCCCCcEEecCCC--CCCChhhHHh-------hcCCCCCcEEEcc
Q 007693 82 WMAYLGAFRYLRSLNVADCRRVTSSALWA----LTGMTCLKELDLSRC--VKVTDAGMKH-------LLSISTLEKLWLS 148 (593)
Q Consensus 82 ~~~~~~~~~~L~~L~L~~~~~i~~~~~~~----l~~l~~L~~L~L~~~--~~l~~~~~~~-------l~~~~~L~~L~L~ 148 (593)
+...+..+++|++|+|++|. ++...+.. +..+++|++|+|++| ..++...+.. +..+++|++|+|+
T Consensus 24 l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHhcCCCccEEECCCCC-CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 34556677788888888776 76665544 446778888888876 2233332322 3577888888888
Q ss_pred CCCCCh----hHHHHhcCCCCCCEEEcCCCCCChhhHHHhhc----C---------CCCCEEEccCCccCccc-h---Hh
Q 007693 149 ETGLTA----DGIALLSSLQNLSVLDLGGLPVTDLVLRSLQV----L---------TKLEYLDLWGSQVSNRG-A---AV 207 (593)
Q Consensus 149 ~~~~~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~----l---------~~L~~L~L~~n~l~~~~-~---~~ 207 (593)
+|.++. ..+..+..+++|++|++++|.+....+..+.. + ++|++|++++|.++... + ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 887776 34556677888888888888876555444433 3 78888888888776332 2 24
Q ss_pred hcCCCCCCeeeccccCCc----------CCCCCCCCcEEEcCCCccc-----chhcccCCCCCcceEeccCccccchhhH
Q 007693 208 LKMFPRLSFLNLAWTGVT----------KLPNISSLECLNLSNCTID-----SILEGNENKAPLAKISLAGTTFINEREA 272 (593)
Q Consensus 208 l~~l~~L~~L~l~~n~l~----------~l~~l~~L~~L~l~~n~l~-----~l~~~~~~~~~L~~L~l~~n~~~~~~~~ 272 (593)
+..+++|++|++++|.++ .+..+++|++|++++|.++ .++..+.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~--------------------- 241 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK--------------------- 241 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG---------------------
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHc---------------------
Confidence 555666666666555554 2334445555555555542 2333333
Q ss_pred HhhhcCCCccEEeccCCCcchh------hhc--ccCCCccEEEccCCCCChh----HHHHHHhccCCCcEEEcCCCCCCC
Q 007693 273 FLYIETSLLSFLDVSNSSLSRF------CFL--TQMKALEHLDLSSSMIGDD----SVEMVACVGANLRNLNLSNTRFSS 340 (593)
Q Consensus 273 ~~~~~~~~L~~L~ls~n~l~~~------~~l--~~~~~L~~L~L~~n~l~~~----~~~~~~~~~~~L~~L~l~~n~l~~ 340 (593)
.+++|++|++++|.++.. ..+ ..+++|++|++++|.+++. .+..+...+++|++|++++|.+++
T Consensus 242 ----~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 242 ----SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp ----GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred ----cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 445555555555555433 223 2267777777777777763 344442323777777777777777
Q ss_pred chH--HHHHcCCCCCcEEEccCC
Q 007693 341 AGV--GILAGHLPNLEILSLSGT 361 (593)
Q Consensus 341 ~~~--~~~~~~~~~L~~L~l~~n 361 (593)
..+ ..+...++.++.+++...
T Consensus 318 ~~~~~~~l~~~l~~~~~~~l~~~ 340 (386)
T 2ca6_A 318 EDDVVDEIREVFSTRGRGELDEL 340 (386)
T ss_dssp TSHHHHHHHHHHHHHTCCEECCC
T ss_pred chhHHHHHHHHhhhcCcchhhhc
Confidence 662 444444555554555443
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=4.2e-24 Score=206.15 Aligned_cols=229 Identities=17% Similarity=0.203 Sum_probs=172.9
Q ss_pred CCccEEeccCCCcchhhhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEc
Q 007693 279 SLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSL 358 (593)
Q Consensus 279 ~~L~~L~ls~n~l~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l 358 (593)
..+..+++.++.+........+++|+.|++++|.+++.. .+..+ ++|++|++++|.+++.. . ++.+++|++|++
T Consensus 19 ~~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~--~l~~l-~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~L 92 (272)
T 3rfs_A 19 AETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ--GIQYL-PNVRYLALGGNKLHDIS--A-LKELTNLTYLIL 92 (272)
T ss_dssp HHHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCT--TGGGC-TTCCEEECTTSCCCCCG--G-GTTCTTCCEEEC
T ss_pred HHHHHHHhcCcccccccccccccceeeeeeCCCCccccc--ccccC-CCCcEEECCCCCCCCch--h-hcCCCCCCEEEC
Confidence 344455555555555555556677777777777766432 23333 77777777777777653 2 256888888888
Q ss_pred cCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCc
Q 007693 359 SGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELI 438 (593)
Q Consensus 359 ~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 438 (593)
++|.+++..+..+..+++|++|++++|++.+..+. .+..+++|++|++++|.+++..+..+..+++|+
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 160 (272)
T 3rfs_A 93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDG------------VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLT 160 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCccCccChhHhcCCcCCCEEECCCCcCCccCHH------------HhccCCCCCEEECCCCccCccCHHHhccCccCC
Confidence 88888887777778889999999999998877766 578889999999999999987777788899999
Q ss_pred EEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcccccCccCCCCCceEecCCCccCCHHH-HHHHHhhCCcEEEEeee
Q 007693 439 HLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDA-ILQFCKMHPRIEVWHEL 517 (593)
Q Consensus 439 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~~~l~~~~~~ 517 (593)
+|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.|.+. +..+..+
T Consensus 161 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~---------- 230 (272)
T 3rfs_A 161 ELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEW---------- 230 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHH----------
T ss_pred EEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcHHHHHHHH----------
Confidence 99999999998887778889999999999999999888888888999999999999876542 2222211
Q ss_pred ccccCCCCCCCCCCCCCcchhhhhh
Q 007693 518 SVICPSDQIGSNGPSPSRTSLRASL 542 (593)
Q Consensus 518 ~~~~~~~~~~~~~~~p~~~~~~~~~ 542 (593)
.|.+.|.+|.+++.+...
T Consensus 231 -------~n~~~g~ip~~~~~~~~~ 248 (272)
T 3rfs_A 231 -------INKHSGVVRNSAGSVAPD 248 (272)
T ss_dssp -------HHHTGGGBBCTTSCBCGG
T ss_pred -------HHhCCCcccCcccccCCC
Confidence 345677788877776553
No 79
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=1.4e-23 Score=213.67 Aligned_cols=199 Identities=17% Similarity=0.252 Sum_probs=126.5
Q ss_pred cccCCCccEEEccCCCCChh----HHHHHHhccCCCcEEEcCCCCCCCchHHHHHc---CC---------CCCcEEEccC
Q 007693 297 LTQMKALEHLDLSSSMIGDD----SVEMVACVGANLRNLNLSNTRFSSAGVGILAG---HL---------PNLEILSLSG 360 (593)
Q Consensus 297 l~~~~~L~~L~L~~n~l~~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~---~~---------~~L~~L~l~~ 360 (593)
+..+++|++|++++|.+++. .+..+... ++|++|++++|.+++.++..+.. .+ ++|++|++++
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~ 168 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH-TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR 168 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHC-TTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHHHHHHhC-CCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCC
Confidence 35566777777777766652 33344444 67777777777666544433322 12 6777777777
Q ss_pred CCCCh-HHH---HHhhcCCCCCEEEeeCCccCc-----cccccccchhhhhhHHhhccCCccCEEecCCCCcC----CCc
Q 007693 361 TQIDD-YAI---SYMSMMPSLKFIDISNTDIKG-----FIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVS----DAT 427 (593)
Q Consensus 361 n~i~~-~~~---~~l~~~~~L~~L~Ls~n~i~~-----~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~----~~~ 427 (593)
|.+++ ..+ ..+..+++|++|++++|.+.. ..+. .+..+++|++|+|++|.++ ..+
T Consensus 169 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~------------~l~~~~~L~~L~Ls~n~l~~~g~~~l 236 (386)
T 2ca6_A 169 NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLE------------GLAYCQELKVLDLQDNTFTHLGSSAL 236 (386)
T ss_dssp SCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHT------------TGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHH------------HhhcCCCccEEECcCCCCCcHHHHHH
Confidence 77762 222 345567778888888777762 1221 4667778888888888775 345
Q ss_pred cccccCCCCCcEEecCCCCCCch----hHHhhhc--CCCCcEEEecCcccCc----ccccCc-cCCCCCceEecCCCccC
Q 007693 428 LFPLSTFKELIHLSLRNASLTDV----SLHQLSS--LSKLTNLSIRDAVLTN----SGLGSF-KPPRSLKLLDLHGGWLL 496 (593)
Q Consensus 428 ~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~--l~~L~~L~L~~n~l~~----~~~~~~-~~~~~L~~L~l~~n~~~ 496 (593)
+..+..+++|++|+|++|.+++. .+..+.. +++|+.|+|++|.+++ ..+..+ .++++|+.|++++|++.
T Consensus 237 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 237 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred HHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 56677778888888888888775 3444533 7888888888888887 234444 44688888888888874
Q ss_pred CHHH-HHHHHhhC
Q 007693 497 TEDA-ILQFCKMH 508 (593)
Q Consensus 497 ~~~~-~~~~~~~~ 508 (593)
.... +..+...+
T Consensus 317 ~~~~~~~~l~~~l 329 (386)
T 2ca6_A 317 EEDDVVDEIREVF 329 (386)
T ss_dssp TTSHHHHHHHHHH
T ss_pred cchhHHHHHHHHh
Confidence 4332 34444333
No 80
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=1.1e-22 Score=204.89 Aligned_cols=164 Identities=19% Similarity=0.244 Sum_probs=82.8
Q ss_pred CCccEEEccCCCCChhHHHHHHhc----cCCCcEEEcCCCCCCCchHHHHH---cCCC-CCcEEEccCCCCChHHHHHhh
Q 007693 301 KALEHLDLSSSMIGDDSVEMVACV----GANLRNLNLSNTRFSSAGVGILA---GHLP-NLEILSLSGTQIDDYAISYMS 372 (593)
Q Consensus 301 ~~L~~L~L~~n~l~~~~~~~~~~~----~~~L~~L~l~~n~l~~~~~~~~~---~~~~-~L~~L~l~~n~i~~~~~~~l~ 372 (593)
++|++|++++|.+++..+..+... +++|++|++++|.+++.+...+. ..++ +|++|++++|.+++..+..++
T Consensus 109 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 188 (362)
T 3goz_A 109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELA 188 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHH
Confidence 567777777777766555554432 24566666666665544333221 1222 455555555544433332222
Q ss_pred cCCCCCEEEeeCCccCccccccccchhhhhhHHhhccC-CccCEEecCCCCcCCCc----cccccC-CCCCcEEecCCCC
Q 007693 373 MMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNL-NHLERLNLEQTQVSDAT----LFPLST-FKELIHLSLRNAS 446 (593)
Q Consensus 373 ~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~----~~~~~~-l~~L~~L~L~~n~ 446 (593)
. .+..+ ++|++|+|++|.+++.. +..+.. .++|++|+|++|.
T Consensus 189 ~--------------------------------~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 236 (362)
T 3goz_A 189 K--------------------------------FLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC 236 (362)
T ss_dssp H--------------------------------HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred H--------------------------------HHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC
Confidence 1 22233 24555555555544421 122222 2356666666666
Q ss_pred CCchhH----HhhhcCCCCcEEEecCcccCcccc-------cCccCCCCCceEecCCCccC
Q 007693 447 LTDVSL----HQLSSLSKLTNLSIRDAVLTNSGL-------GSFKPPRSLKLLDLHGGWLL 496 (593)
Q Consensus 447 l~~~~~----~~l~~l~~L~~L~L~~n~l~~~~~-------~~~~~~~~L~~L~l~~n~~~ 496 (593)
+++..+ ..+..+++|+.|++++|.+.++.. ..+..+++|+.||+++|++.
T Consensus 237 l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 237 LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 555433 223455666666666666443322 24555667777777777763
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=3.7e-22 Score=199.18 Aligned_cols=258 Identities=21% Similarity=0.229 Sum_probs=166.2
Q ss_pred CCCEEEccCCccCccchHhhcCCCCCCeeeccccCCcCCCCCCCCcEEEcCCCcccchhcccCCCCCcceEeccCccccc
Q 007693 189 KLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFIN 268 (593)
Q Consensus 189 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~~~~ 268 (593)
.++.++++++.+. +..+..+ ..+.++.|++++|.+.+.+..++.+++|++|++++|.+..
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~-----------------~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~ 107 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRL-----------------LSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEV 107 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHH-----------------HHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECH
T ss_pred hheeeccccccCC---HHHHHhh-----------------hhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCH
Confidence 4677777777665 2333333 0034555555555555554555566777777777776654
Q ss_pred hhhHHhhhcCCCccEEeccCCCcchh--hhcccCCCccEEEccCC-CCChhHHHHHHhccCCCcEEEcCCC-CCCCchHH
Q 007693 269 EREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSS-MIGDDSVEMVACVGANLRNLNLSNT-RFSSAGVG 344 (593)
Q Consensus 269 ~~~~~~~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~ 344 (593)
......+..+++|++|++++|.+++. ..+..+++|++|++++| .+++.....+...+++|++|++++| .+++....
T Consensus 108 ~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~ 187 (336)
T 2ast_B 108 STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ 187 (336)
T ss_dssp HHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH
T ss_pred HHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHH
Confidence 21112234667777777777776543 45667788888888888 6776544443333388888888888 77776544
Q ss_pred HHHcCCC-CCcEEEccCC--CCC-hHHHHHhhcCCCCCEEEeeCCc-cCccccccccchhhhhhHHhhccCCccCEEecC
Q 007693 345 ILAGHLP-NLEILSLSGT--QID-DYAISYMSMMPSLKFIDISNTD-IKGFIQQVGAETDLVLSLTALQNLNHLERLNLE 419 (593)
Q Consensus 345 ~~~~~~~-~L~~L~l~~n--~i~-~~~~~~l~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 419 (593)
..++.++ +|++|++++| .++ +..+..+..+++|++|++++|. +++..+. .+..+++|++|+++
T Consensus 188 ~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~------------~l~~l~~L~~L~l~ 255 (336)
T 2ast_B 188 VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ------------EFFQLNYLQHLSLS 255 (336)
T ss_dssp HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG------------GGGGCTTCCEEECT
T ss_pred HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH------------HHhCCCCCCEeeCC
Confidence 5456688 8888888888 566 4455566678888888888887 5554444 57777888888888
Q ss_pred CC-CcCCCccccccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcccccCccC
Q 007693 420 QT-QVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKP 481 (593)
Q Consensus 420 ~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 481 (593)
+| .++......+..+++|+.|++++| ++......+. .+++.|++++|.+++..+..+..
T Consensus 256 ~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 256 RCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp TCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCSS
T ss_pred CCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCcccc
Confidence 88 444433345777888888888888 6554333332 22445557888888877666543
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=2.2e-22 Score=202.60 Aligned_cols=246 Identities=15% Similarity=0.155 Sum_probs=150.5
Q ss_pred EEecCCCCCChhHHHHHhcCCCccEEEcCCCCccCchHH----HhhhCCC-CCcEEecCCCCCCChhhHHhhcCC-----
Q 007693 70 IELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSAL----WALTGMT-CLKELDLSRCVKVTDAGMKHLLSI----- 139 (593)
Q Consensus 70 L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~----~~l~~l~-~L~~L~L~~~~~l~~~~~~~l~~~----- 139 (593)
.++++|. +.+..+..+...++|++|+|++|. +++... .++..++ +|++|+|++| .+++..+..++.+
T Consensus 3 ~~ls~n~-~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~ 79 (362)
T 3goz_A 3 YKLTLHP-GSNPVEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIP 79 (362)
T ss_dssp EECCCCT-TCCHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSC
T ss_pred ccccccc-chHHHHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccC
Confidence 5677776 666777777666778888888887 766665 5677777 8888888888 6776666666543
Q ss_pred CCCcEEEccCCCCChhHHHH----hcCC-CCCCEEEcCCCCCChhhHHHhhc-----CCCCCEEEccCCccCccchHh--
Q 007693 140 STLEKLWLSETGLTADGIAL----LSSL-QNLSVLDLGGLPVTDLVLRSLQV-----LTKLEYLDLWGSQVSNRGAAV-- 207 (593)
Q Consensus 140 ~~L~~L~L~~~~~~~~~~~~----l~~l-~~L~~L~L~~n~l~~~~~~~l~~-----l~~L~~L~L~~n~l~~~~~~~-- 207 (593)
++|++|++++|.+++..+.. +..+ ++|++|++++|.+++..+..+.. .++|++|++++|.+++.....
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 88888888888887665553 3344 78888888888887766655533 358888888888887654443
Q ss_pred --hcCCC-CCCeeeccccCCcCCC---------CC-CCCcEEEcCCCcccc-----hhcccCCCCCcceEeccCccccch
Q 007693 208 --LKMFP-RLSFLNLAWTGVTKLP---------NI-SSLECLNLSNCTIDS-----ILEGNENKAPLAKISLAGTTFINE 269 (593)
Q Consensus 208 --l~~l~-~L~~L~l~~n~l~~l~---------~l-~~L~~L~l~~n~l~~-----l~~~~~~~~~L~~L~l~~n~~~~~ 269 (593)
+...+ +|++|++++|.++... .+ ++|++|++++|.+.. ++..+..
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~----------------- 222 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS----------------- 222 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH-----------------
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc-----------------
Confidence 34443 5666666666554322 22 355555555555443 3333332
Q ss_pred hhHHhhhcCCCccEEeccCCCcchh------hhcccCCCccEEEccCCC---CChhHHHHHHhcc---CCCcEEEcCCCC
Q 007693 270 REAFLYIETSLLSFLDVSNSSLSRF------CFLTQMKALEHLDLSSSM---IGDDSVEMVACVG---ANLRNLNLSNTR 337 (593)
Q Consensus 270 ~~~~~~~~~~~L~~L~ls~n~l~~~------~~l~~~~~L~~L~L~~n~---l~~~~~~~~~~~~---~~L~~L~l~~n~ 337 (593)
..++|++|++++|.++.. ..+..+++|++|++++|. ++......+.... ++|+.|++++|.
T Consensus 223 -------~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 223 -------IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp -------SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred -------CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 123555555555555432 223455666666666665 3333333332221 446666666666
Q ss_pred CCCch
Q 007693 338 FSSAG 342 (593)
Q Consensus 338 l~~~~ 342 (593)
+.+..
T Consensus 296 l~~~~ 300 (362)
T 3goz_A 296 IHPSH 300 (362)
T ss_dssp CCGGG
T ss_pred CCCcc
Confidence 66553
No 83
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.88 E-value=7.5e-23 Score=198.07 Aligned_cols=203 Identities=18% Similarity=0.221 Sum_probs=148.4
Q ss_pred CcceEeccCccccchhhHHhhhcCCCccEEeccCCCcchh--hhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEE
Q 007693 255 PLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLN 332 (593)
Q Consensus 255 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ 332 (593)
+|++|++++|.+..++.. .+.++++|++|++++|.++.+ ..+..+++|++|++++|.+++..+..+..+ ++|++|+
T Consensus 29 ~l~~L~ls~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~ 106 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL-SSLQKLV 106 (276)
T ss_dssp TCCEEECTTCCCCEECTT-TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC-TTCCEEE
T ss_pred CccEEECCCCcccccCHh-HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCC-ccccEEE
Confidence 455555555555444332 233556666666666666555 246667777777777777776655555555 7788888
Q ss_pred cCCCCCCCchHHHHHcCCCCCcEEEccCCCCChH-HHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCC
Q 007693 333 LSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDY-AISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLN 411 (593)
Q Consensus 333 l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~ 411 (593)
+++|.+++.....+ +.+++|++|++++|.+++. .+..+..+++|++|++++|++.+..+. .+..++
T Consensus 107 l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~------------~~~~l~ 173 (276)
T 2z62_A 107 AVETNLASLENFPI-GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT------------DLRVLH 173 (276)
T ss_dssp CTTSCCCCSTTCCC-TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG------------GGHHHH
T ss_pred CCCCCccccCchhc-ccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH------------Hhhhhh
Confidence 88887776655333 5688999999999988874 367788999999999999999887665 455555
Q ss_pred ccC----EEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCc
Q 007693 412 HLE----RLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 473 (593)
Q Consensus 412 ~L~----~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 473 (593)
+|+ +|++++|.+++..+..+. ..+|+.|++++|++++..+..|..+++|+.|++++|+++.
T Consensus 174 ~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 174 QMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp TCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred hccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 555 899999999986655554 4489999999999999887778999999999999999874
No 84
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.88 E-value=1.3e-22 Score=195.62 Aligned_cols=181 Identities=19% Similarity=0.298 Sum_probs=142.4
Q ss_pred CCccEEeccCCCcchh--hhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEE
Q 007693 279 SLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL 356 (593)
Q Consensus 279 ~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L 356 (593)
+++++|++++|.++.+ ..+..+++|++|++++|.+++.....+..+ ++|++|++++|.+++.+...+ +.+++|++|
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L 114 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL-KNLETLWVTDNKLQALPIGVF-DQLVNLAEL 114 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSC-TTCCEEECCSSCCCCCCTTTT-TTCSSCCEE
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCC-CCCCEEECCCCcCCcCCHhHc-ccccCCCEE
Confidence 3455555555555554 245666777777777777765444444444 778888888887777665444 568889999
Q ss_pred EccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCC
Q 007693 357 SLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKE 436 (593)
Q Consensus 357 ~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 436 (593)
++++|.+++..+..|..+++|++|++++|.+.+..+. .+..+++|++|++++|.+++..+..|..+++
T Consensus 115 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 182 (270)
T 2o6q_A 115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG------------VFDKLTSLKELRLYNNQLKRVPEGAFDKLTE 182 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT------------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred ECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHh------------HccCCcccceeEecCCcCcEeChhHhccCCC
Confidence 9999988887777788899999999999999887766 5888999999999999999977778899999
Q ss_pred CcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCc
Q 007693 437 LIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 473 (593)
Q Consensus 437 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 473 (593)
|++|++++|+++++.+..|..+++|+.|++++|++..
T Consensus 183 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 183 LKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 9999999999998887788899999999999998764
No 85
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=1e-22 Score=196.40 Aligned_cols=196 Identities=17% Similarity=0.232 Sum_probs=141.4
Q ss_pred cCCCccEEeccCCCcchhhhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEE
Q 007693 277 ETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL 356 (593)
Q Consensus 277 ~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L 356 (593)
.+++|+.|++++|.+..++.+..+++|++|++++|.+++. ..+..+ ++|++|++++|.+++..+..+ +.+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l-~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L 114 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--SALKEL-TNLTYLILTGNQLQSLPNGVF-DKLTNLKEL 114 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC--GGGTTC-TTCCEEECTTSCCCCCCTTTT-TTCTTCCEE
T ss_pred cccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc--hhhcCC-CCCCEEECCCCccCccChhHh-cCCcCCCEE
Confidence 4566777777777776666667777777777777777653 233333 677777777777776655444 457778888
Q ss_pred EccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCC
Q 007693 357 SLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKE 436 (593)
Q Consensus 357 ~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 436 (593)
++++|.+++..+..+..+++|++|++++|.+.+..+. .+..+++|++|++++|.+++..+..+..+++
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 182 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG------------VFDKLTNLTELDLSYNQLQSLPEGVFDKLTQ 182 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHH------------HhccCccCCEEECCCCCcCccCHHHhcCCcc
Confidence 8888777776666677777888888888877766665 4677778888888888887766666777788
Q ss_pred CcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcccccCccCCCCCceEecCCCcc
Q 007693 437 LIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL 495 (593)
Q Consensus 437 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~ 495 (593)
|++|++++|++++..+..+..+++|+.|++++|.+.+. ++.|+.++++.|.+
T Consensus 183 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~ 234 (272)
T 3rfs_A 183 LKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKH 234 (272)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHT
T ss_pred CCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhC
Confidence 88888888888777776677788888888888876632 56677777777766
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=3.4e-22 Score=190.40 Aligned_cols=191 Identities=17% Similarity=0.253 Sum_probs=162.6
Q ss_pred CCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEE
Q 007693 301 KALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFI 380 (593)
Q Consensus 301 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L 380 (593)
...++++++++.++.... . ..+.+++|++++|.+++..+..+ +.+++|++|++++|.+++..+..|..+++|++|
T Consensus 14 ~~~~~l~~~~~~l~~~p~-~---~~~~l~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 88 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPS-G---IPADTEKLDLQSTGLATLSDATF-RGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTL 88 (251)
T ss_dssp GGGTEEECTTCCCSSCCS-C---CCTTCCEEECTTSCCCCCCTTTT-TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCeEEecCCCCccccCC-C---CCCCCCEEEccCCCcCccCHhHh-cCcccCCEEECCCCcCCccCHhHhccCCcCCEE
Confidence 345667777766664321 1 22678888888888887766555 568999999999999998877778899999999
Q ss_pred EeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhcCCC
Q 007693 381 DISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSK 460 (593)
Q Consensus 381 ~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 460 (593)
++++|++.+..+. .|..+++|++|+|++|.+++..+..|..+++|++|+|++|+++++.+..|..+++
T Consensus 89 ~L~~n~l~~~~~~------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 89 GLANNQLASLPLG------------VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp ECTTSCCCCCCTT------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred ECCCCcccccChh------------HhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 9999999988777 6889999999999999999987777899999999999999999988888999999
Q ss_pred CcEEEecCcccCcccccCccCCCCCceEecCCCccCCH-HHHHHHHhhC
Q 007693 461 LTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTE-DAILQFCKMH 508 (593)
Q Consensus 461 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~ 508 (593)
|+.|+|++|++++..+..+..+++|+.|++++|++.|+ +.+.++..|.
T Consensus 157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~ 205 (251)
T 3m19_A 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWI 205 (251)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHH
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHH
Confidence 99999999999999888999999999999999999888 7777776654
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=1.9e-21 Score=190.87 Aligned_cols=191 Identities=20% Similarity=0.315 Sum_probs=104.2
Q ss_pred cCCCccEEeccCCCcchhhhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEE
Q 007693 277 ETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL 356 (593)
Q Consensus 277 ~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L 356 (593)
.+++|++|++++|.+..++.+..+++|++|++++|.+++..+ +..+ ++|++|++++|.+++.. . +..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l-~~L~~L~L~~n~l~~~~--~-~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNL-TKITELELSGNPLKNVS--A-IAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTC-CSCCEEECCSCCCSCCG--G-GTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccC-CCCCEEEccCCcCCCch--h-hcCCCCCCEE
Confidence 344555555555555555555555555555555555554333 3333 55555555555555543 1 2445566666
Q ss_pred EccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCC
Q 007693 357 SLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKE 436 (593)
Q Consensus 357 ~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 436 (593)
++++|.+++.. .+..+++|++|++++|.+.+.. .+..+++|++|++++|.+++..+ +..+++
T Consensus 113 ~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~--------------~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~ 174 (308)
T 1h6u_A 113 DLTSTQITDVT--PLAGLSNLQVLYLDLNQITNIS--------------PLAGLTNLQYLSIGNAQVSDLTP--LANLSK 174 (308)
T ss_dssp ECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--------------GGGGCTTCCEEECCSSCCCCCGG--GTTCTT
T ss_pred ECCCCCCCCch--hhcCCCCCCEEECCCCccCcCc--------------cccCCCCccEEEccCCcCCCChh--hcCCCC
Confidence 66666555532 2555566666666666555432 14455566666666666655322 555566
Q ss_pred CcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcccccCccCCCCCceEecCCCcc
Q 007693 437 LIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL 495 (593)
Q Consensus 437 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~ 495 (593)
|+.|++++|++++..+ +..+++|+.|++++|++++..+ +..+++|+.|++++|++
T Consensus 175 L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 175 LTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTI 229 (308)
T ss_dssp CCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEE
T ss_pred CCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCee
Confidence 6666666666655443 5556666666666666655432 45556666666666655
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=1.7e-21 Score=191.80 Aligned_cols=226 Identities=15% Similarity=0.109 Sum_probs=169.9
Q ss_pred CcceEeccCccccc--hhhHHhhhcCCCccEEeccCCCcchh--hhc--ccCCCccEEEccCCCCChhHH----HHHHhc
Q 007693 255 PLAKISLAGTTFIN--EREAFLYIETSLLSFLDVSNSSLSRF--CFL--TQMKALEHLDLSSSMIGDDSV----EMVACV 324 (593)
Q Consensus 255 ~L~~L~l~~n~~~~--~~~~~~~~~~~~L~~L~ls~n~l~~~--~~l--~~~~~L~~L~L~~n~l~~~~~----~~~~~~ 324 (593)
.++.+.+.++.+.. ......+..+++|++|++++|.+.+. ..+ ..+++|++|++++|.+++..+ ..+. .
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW-L 143 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-B
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-h
Confidence 35555555555543 12222233457799999999988766 333 778999999999999886322 2233 3
Q ss_pred cCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHH----HHhhcCCCCCEEEeeCCccCccccccccchhh
Q 007693 325 GANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAI----SYMSMMPSLKFIDISNTDIKGFIQQVGAETDL 400 (593)
Q Consensus 325 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~----~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 400 (593)
+++|++|++++|.+++..+..+ +.+++|++|++++|++.+... ..+..+++|++|++++|+++.....
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~------- 215 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQV-RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGV------- 215 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSC-CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHH-------
T ss_pred ccCCCEEEeeCCCcchhhHHHh-ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHH-------
Confidence 3899999999999988777665 678999999999999876422 1235789999999999999754321
Q ss_pred hhhHHhhccCCccCEEecCCCCcCCCccccccCC---CCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCccccc
Q 007693 401 VLSLTALQNLNHLERLNLEQTQVSDATLFPLSTF---KELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLG 477 (593)
Q Consensus 401 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 477 (593)
....++.+++|++|+|++|.+++..|..+..+ ++|++|++++|+++.+ |..+. ++|+.|++++|+|++..
T Consensus 216 --~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~~--~~L~~L~Ls~N~l~~~~-- 288 (310)
T 4glp_A 216 --CAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV-PKGLP--AKLRVLDLSSNRLNRAP-- 288 (310)
T ss_dssp --HHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC-CSCCC--SCCSCEECCSCCCCSCC--
T ss_pred --HHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch-hhhhc--CCCCEEECCCCcCCCCc--
Confidence 00125788999999999999999877777766 6999999999999964 44443 89999999999999862
Q ss_pred CccCCCCCceEecCCCccC
Q 007693 478 SFKPPRSLKLLDLHGGWLL 496 (593)
Q Consensus 478 ~~~~~~~L~~L~l~~n~~~ 496 (593)
.+..+++|+.|++++|++.
T Consensus 289 ~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 289 QPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CTTSCCCCSCEECSSTTTS
T ss_pred hhhhCCCccEEECcCCCCC
Confidence 2677899999999999983
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=1.3e-20 Score=185.05 Aligned_cols=195 Identities=23% Similarity=0.404 Sum_probs=133.4
Q ss_pred CCCCcEEEcCCCcccchhcccCCCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcchhhhcccCCCccEEEcc
Q 007693 230 ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLS 309 (593)
Q Consensus 230 l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~L~ 309 (593)
+++|++|++++|.+..++ .+..+++|++|++++| .+++++.+..+++|++|+++
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n-------------------------~i~~~~~~~~l~~L~~L~L~ 93 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDN-------------------------QITDLAPLKNLTKITELELS 93 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-------------------------CCCCCGGGTTCCSCCEEECC
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCC-------------------------cCCCChhHccCCCCCEEEcc
Confidence 456666666666665544 3334444555555554 44444334555556666666
Q ss_pred CCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCc
Q 007693 310 SSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKG 389 (593)
Q Consensus 310 ~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~ 389 (593)
+|.+++.. .+..+ ++|++|++++|.+++... ++.+++|++|++++|.+++..+ +..+++|+.|++++|.+.+
T Consensus 94 ~n~l~~~~--~~~~l-~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~ 165 (308)
T 1h6u_A 94 GNPLKNVS--AIAGL-QSIKTLDLTSTQITDVTP---LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD 165 (308)
T ss_dssp SCCCSCCG--GGTTC-TTCCEEECTTSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred CCcCCCch--hhcCC-CCCCEEECCCCCCCCchh---hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC
Confidence 65555432 23333 666666666666666543 2567888888888888776544 7788888888888888875
Q ss_pred cccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCc
Q 007693 390 FIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDA 469 (593)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 469 (593)
.. .+..+++|++|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|
T Consensus 166 ~~--------------~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 166 LT--------------PLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQ 227 (308)
T ss_dssp CG--------------GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEE
T ss_pred Ch--------------hhcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCC
Confidence 42 26778889999999998887543 7888999999999999988663 888999999999999
Q ss_pred ccCcccc
Q 007693 470 VLTNSGL 476 (593)
Q Consensus 470 ~l~~~~~ 476 (593)
++++.+.
T Consensus 228 ~i~~~~~ 234 (308)
T 1h6u_A 228 TITNQPV 234 (308)
T ss_dssp EEECCCE
T ss_pred eeecCCe
Confidence 9987543
No 90
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.85 E-value=2.9e-21 Score=187.69 Aligned_cols=202 Identities=16% Similarity=0.188 Sum_probs=130.7
Q ss_pred CCCCCcEEEcCCCcccchhcccCCCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcchhhhcccCCCccEEEc
Q 007693 229 NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDL 308 (593)
Q Consensus 229 ~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~L 308 (593)
+++++++++++++.++.+|..+. +.++.|++++|.+..+++. .+..+++|++|++++|.++.++....+++|++|++
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L 84 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLA-TLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDL 84 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGG-GGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEEC
T ss_pred ccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHH-HhhcCCCCCEEECCCCccCcccCCCCCCcCCEEEC
Confidence 44556666666666666655443 4566666666665554332 23345555555555555554433344444444444
Q ss_pred cCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccC
Q 007693 309 SSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIK 388 (593)
Q Consensus 309 ~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~ 388 (593)
++| .++..+. . +..+++|++|++++|++++..+..|..+++|++|++++|++.
T Consensus 85 s~N-------------------------~l~~l~~-~-~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 137 (290)
T 1p9a_G 85 SHN-------------------------QLQSLPL-L-GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137 (290)
T ss_dssp CSS-------------------------CCSSCCC-C-TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC
T ss_pred CCC-------------------------cCCcCch-h-hccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC
Confidence 444 4443221 1 145677777777777777766666777888888888888887
Q ss_pred ccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecC
Q 007693 389 GFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRD 468 (593)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 468 (593)
+.++. .|..+++|+.|+|++|+++...+..|..+++|+.|+|++|+++.+ |..+..+++|+.|++++
T Consensus 138 ~~~~~------------~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 138 TLPPG------------LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHG 204 (290)
T ss_dssp CCCTT------------TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCS
T ss_pred ccChh------------hcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCcc-ChhhcccccCCeEEeCC
Confidence 76665 577788888888888888876666677788888888888888764 45566677888888888
Q ss_pred cccCc
Q 007693 469 AVLTN 473 (593)
Q Consensus 469 n~l~~ 473 (593)
|++.-
T Consensus 205 Np~~C 209 (290)
T 1p9a_G 205 NPWLC 209 (290)
T ss_dssp CCBCC
T ss_pred CCccC
Confidence 87753
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=9.7e-22 Score=193.52 Aligned_cols=219 Identities=19% Similarity=0.171 Sum_probs=129.4
Q ss_pred CccEEEcCCCCccCchHHHh---hhCCCCCcEEecCCCCCCChhhHHhh--cCCCCCcEEEccCCCCChhH----HHHhc
Q 007693 91 YLRSLNVADCRRVTSSALWA---LTGMTCLKELDLSRCVKVTDAGMKHL--LSISTLEKLWLSETGLTADG----IALLS 161 (593)
Q Consensus 91 ~L~~L~L~~~~~i~~~~~~~---l~~l~~L~~L~L~~~~~l~~~~~~~l--~~~~~L~~L~L~~~~~~~~~----~~~l~ 161 (593)
.++.+.+.++. +++..... ...+++|++|++++| .++...+..+ ..+++|++|++++|.+++.. ...+.
T Consensus 65 ~l~~l~l~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 65 RVRRLTVGAAQ-VPAQLLVGALRVLAYSRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCEEEECSCC-CBHHHHHHHHHHHHHSCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred ceeEEEEeCCc-CCHHHHHHHHHhcccCceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 45666666655 44333322 123455667777666 4554444444 56666777777766666421 13344
Q ss_pred CCCCCCEEEcCCCCCChhhHHHhhcCCCCCEEEccCCccCccch----HhhcCCCCCCeeeccccCCcCCC--------C
Q 007693 162 SLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGA----AVLKMFPRLSFLNLAWTGVTKLP--------N 229 (593)
Q Consensus 162 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~l~~n~l~~l~--------~ 229 (593)
.+++|++|++++|.+.+..+..++.+++|++|++++|.+.+... ..+..+++|++|++++|.++.++ .
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 56667777777766666666666666667777777666553211 12245666666666666665432 3
Q ss_pred CCCCcEEEcCCCcccch-hcccCCC---CCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcchhhhcccCCCccE
Q 007693 230 ISSLECLNLSNCTIDSI-LEGNENK---APLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEH 305 (593)
Q Consensus 230 l~~L~~L~l~~n~l~~l-~~~~~~~---~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~ 305 (593)
+++|++|++++|.+..+ |+.+..+ ++|++|++++|.+..+|..+ .++|++|++++|.+++++.+..+++|++
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~----~~~L~~L~Ls~N~l~~~~~~~~l~~L~~ 298 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL----PAKLRVLDLSSNRLNRAPQPDELPEVDN 298 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC----CSCCSCEECCSCCCCSCCCTTSCCCCSC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh----cCCCCEEECCCCcCCCCchhhhCCCccE
Confidence 46666677777766654 5544433 56777777777766655433 2566777777777666555566667777
Q ss_pred EEccCCCCCh
Q 007693 306 LDLSSSMIGD 315 (593)
Q Consensus 306 L~L~~n~l~~ 315 (593)
|++++|.+++
T Consensus 299 L~L~~N~l~~ 308 (310)
T 4glp_A 299 LTLDGNPFLV 308 (310)
T ss_dssp EECSSTTTSC
T ss_pred EECcCCCCCC
Confidence 7777776654
No 92
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.83 E-value=1e-20 Score=175.83 Aligned_cols=165 Identities=18% Similarity=0.220 Sum_probs=148.0
Q ss_pred cEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhc
Q 007693 329 RNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQ 408 (593)
Q Consensus 329 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~ 408 (593)
+.++++++.++..+. .-.+++++|++++|.+++..+..|..+++|+.|+|++|.+.+..+. .|.
T Consensus 14 ~~v~c~~~~l~~iP~----~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~------------~~~ 77 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPT----NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPD------------AFQ 77 (220)
T ss_dssp TEEECTTSCCSSCCS----SCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTT------------TTT
T ss_pred CEEEcCCCCcCcCCC----ccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHH------------Hhh
Confidence 567788887777654 1236899999999999988777888999999999999999988777 799
Q ss_pred cCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcccccCccCCCCCceE
Q 007693 409 NLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLL 488 (593)
Q Consensus 409 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 488 (593)
++++|++|+|++|.++...+..|..+++|++|+|++|+++++.+..|..+++|+.|+|++|+|+++.+..|..+++|+.|
T Consensus 78 ~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 157 (220)
T 2v9t_B 78 GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTM 157 (220)
T ss_dssp TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEE
Confidence 99999999999999999777778999999999999999999989999999999999999999999988889999999999
Q ss_pred ecCCCccCCHHHHHHHHhhCC
Q 007693 489 DLHGGWLLTEDAILQFCKMHP 509 (593)
Q Consensus 489 ~l~~n~~~~~~~~~~~~~~~~ 509 (593)
++++|++.|+|.+.|+..++.
T Consensus 158 ~L~~N~~~c~c~l~~l~~~l~ 178 (220)
T 2v9t_B 158 HLAQNPFICDCHLKWLADYLH 178 (220)
T ss_dssp ECCSSCEECSGGGHHHHHHHH
T ss_pred EeCCCCcCCCCccHHHHHHHH
Confidence 999999999999999987654
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=2.1e-21 Score=183.58 Aligned_cols=195 Identities=14% Similarity=0.208 Sum_probs=137.1
Q ss_pred CccEEeccCCCcchh--hhcccCCCccEEEccCCC-CChhHHHHHHhccCCCcEEEcCC-CCCCCchHHHHHcCCCCCcE
Q 007693 280 LLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSM-IGDDSVEMVACVGANLRNLNLSN-TRFSSAGVGILAGHLPNLEI 355 (593)
Q Consensus 280 ~L~~L~ls~n~l~~~--~~l~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~~L~~ 355 (593)
++++|++++|.++.+ ..+..+++|++|++++|. +++.....+..+ ++|++|++++ |.+++.+...+ +.+++|++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l-~~L~~L~l~~~n~l~~i~~~~f-~~l~~L~~ 109 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNL-SKVTHIEIRNTRNLTYIDPDAL-KELPLLKF 109 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESC-TTCCEEEEEEETTCCEECTTSE-ECCTTCCE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCC-cCCcEEECCCCCCeeEcCHHHh-CCCCCCCE
Confidence 444444444444444 234555566666666654 554443333333 5666666665 66665554444 56778888
Q ss_pred EEccCCCCChHHHHHhhcCCCCC---EEEeeCC-ccCccccccccchhhhhhHHhhccCCccC-EEecCCCCcCCCcccc
Q 007693 356 LSLSGTQIDDYAISYMSMMPSLK---FIDISNT-DIKGFIQQVGAETDLVLSLTALQNLNHLE-RLNLEQTQVSDATLFP 430 (593)
Q Consensus 356 L~l~~n~i~~~~~~~l~~~~~L~---~L~Ls~n-~i~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~ 430 (593)
|++++|.+++.. . +..+++|+ +|++++| .+.+..+. .|..+++|+ +|++++|.++...+..
T Consensus 110 L~l~~n~l~~lp-~-~~~l~~L~~L~~L~l~~N~~l~~i~~~------------~~~~l~~L~~~L~l~~n~l~~i~~~~ 175 (239)
T 2xwt_C 110 LGIFNTGLKMFP-D-LTKVYSTDIFFILEITDNPYMTSIPVN------------AFQGLCNETLTLKLYNNGFTSVQGYA 175 (239)
T ss_dssp EEEEEECCCSCC-C-CTTCCBCCSEEEEEEESCTTCCEECTT------------TTTTTBSSEEEEECCSCCCCEECTTT
T ss_pred EeCCCCCCcccc-c-cccccccccccEEECCCCcchhhcCcc------------cccchhcceeEEEcCCCCCcccCHhh
Confidence 888888777633 2 66777777 9999999 88877666 688899999 9999999998655545
Q ss_pred ccCCCCCcEEecCCCC-CCchhHHhhhcC-CCCcEEEecCcccCcccccCccCCCCCceEecCCCc
Q 007693 431 LSTFKELIHLSLRNAS-LTDVSLHQLSSL-SKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGW 494 (593)
Q Consensus 431 ~~~l~~L~~L~L~~n~-l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 494 (593)
+.. ++|+.|++++|+ ++++.+..|.++ ++|+.|++++|+++++++. .+++|+.|+++++.
T Consensus 176 ~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 176 FNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp TTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred cCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 555 789999999995 988878888888 9999999999999887554 45789999998875
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=1.5e-20 Score=178.96 Aligned_cols=180 Identities=20% Similarity=0.254 Sum_probs=142.5
Q ss_pred CccEEeccCCCcchhhhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEcc
Q 007693 280 LLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLS 359 (593)
Q Consensus 280 ~L~~L~ls~n~l~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~ 359 (593)
..+.++++++.++.++.- -.+.+++|++++|.+++..+..+..+ ++|++|++++|.+++..+..+ ..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~~~p~~-~~~~l~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSG-IPADTEKLDLQSTGLATLSDATFRGL-TKLTWLNLDYNQLQTLSAGVF-DDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSSCCSC-CCTTCCEEECTTSCCCCCCTTTTTTC-TTCCEEECTTSCCCCCCTTTT-TTCTTCCEEECT
T ss_pred CCeEEecCCCCccccCCC-CCCCCCEEEccCCCcCccCHhHhcCc-ccCCEEECCCCcCCccCHhHh-ccCCcCCEEECC
Confidence 445566666666555321 12567777777777776665555555 788888888888877666554 568889999999
Q ss_pred CCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcE
Q 007693 360 GTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIH 439 (593)
Q Consensus 360 ~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 439 (593)
+|.+++..+..|..+++|++|++++|.+.+..+. .|..+++|++|+|++|.+++..+..|..+++|++
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 159 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSG------------VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQT 159 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChh------------HhccCCcccEEECcCCcCCccCHHHcCcCcCCCE
Confidence 9988887777788899999999999999877766 5788999999999999999877778889999999
Q ss_pred EecCCCCCCchhHHhhhcCCCCcEEEecCcccCcc
Q 007693 440 LSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS 474 (593)
Q Consensus 440 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 474 (593)
|+|++|++++..+..+..+++|+.|++++|+++..
T Consensus 160 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 160 LSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred EECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 99999999988888888999999999999998754
No 95
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=2.1e-20 Score=173.80 Aligned_cols=166 Identities=18% Similarity=0.198 Sum_probs=145.3
Q ss_pred CcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHH-HHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHh
Q 007693 328 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAI-SYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTA 406 (593)
Q Consensus 328 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~ 406 (593)
-+.+++++|.++..+. .-.+.+++|++++|.+++..+ ..|..+++|++|++++|.+++..+. .
T Consensus 13 ~~~l~~s~n~l~~iP~----~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~------------~ 76 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPE----HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG------------A 76 (220)
T ss_dssp TTEEECCSSCCSSCCS----CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTT------------T
T ss_pred CCEeEeCCCCcccCcc----CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHH------------H
Confidence 3577888887776543 223467889999998887643 4578899999999999999988776 6
Q ss_pred hccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcccccCccCCCCCc
Q 007693 407 LQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLK 486 (593)
Q Consensus 407 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 486 (593)
|..+++|++|+|++|.+++..+..|..+++|++|+|++|+++++.+..|..+++|+.|+|++|+|++..+..|..+++|+
T Consensus 77 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 156 (220)
T 2v70_A 77 FEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLS 156 (220)
T ss_dssp TTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCC
T ss_pred hCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCC
Confidence 89999999999999999998888899999999999999999999888999999999999999999999899999999999
Q ss_pred eEecCCCccCCHHHHHHHHhhCC
Q 007693 487 LLDLHGGWLLTEDAILQFCKMHP 509 (593)
Q Consensus 487 ~L~l~~n~~~~~~~~~~~~~~~~ 509 (593)
.|++++|++.|+|.+.++..++.
T Consensus 157 ~L~L~~N~l~c~c~l~~l~~~~~ 179 (220)
T 2v70_A 157 TLNLLANPFNCNCYLAWLGEWLR 179 (220)
T ss_dssp EEECCSCCEECSGGGHHHHHHHH
T ss_pred EEEecCcCCcCCCchHHHHHHHH
Confidence 99999999999999999877764
No 96
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.81 E-value=6e-21 Score=180.39 Aligned_cols=194 Identities=12% Similarity=0.148 Sum_probs=130.1
Q ss_pred CcceEeccCccccchhhHHhhhcCCCccEEeccCCC-cchh--hhcccCCCccEEEccC-CCCChhHHHHHHhccCCCcE
Q 007693 255 PLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS-LSRF--CFLTQMKALEHLDLSS-SMIGDDSVEMVACVGANLRN 330 (593)
Q Consensus 255 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~-l~~~--~~l~~~~~L~~L~L~~-n~l~~~~~~~~~~~~~~L~~ 330 (593)
+|++|++++|.+..+++. .+.++++|++|++++|. ++.+ ..+..+++|++|++++ |.+++..+..+..+ ++|++
T Consensus 32 ~l~~L~l~~n~l~~i~~~-~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l-~~L~~ 109 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSH-AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKEL-PLLKF 109 (239)
T ss_dssp TCCEEEEESCCCSEECTT-TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECC-TTCCE
T ss_pred cccEEEEeCCcceEECHH-HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCC-CCCCE
Confidence 444444444444443331 12344555555555554 4444 2455566666666665 66655444444333 66666
Q ss_pred EEcCCCCCCCchHHHHHcCCCCCc---EEEccCC-CCChHHHHHhhcCCCCC-EEEeeCCccCccccccccchhhhhhHH
Q 007693 331 LNLSNTRFSSAGVGILAGHLPNLE---ILSLSGT-QIDDYAISYMSMMPSLK-FIDISNTDIKGFIQQVGAETDLVLSLT 405 (593)
Q Consensus 331 L~l~~n~l~~~~~~~~~~~~~~L~---~L~l~~n-~i~~~~~~~l~~~~~L~-~L~Ls~n~i~~~~~~~~~~~~~~~~~~ 405 (593)
|++++|.+++.+. ++.+++|+ +|++++| .+++..+..|..+++|+ .|++++|++....+.
T Consensus 110 L~l~~n~l~~lp~---~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~------------ 174 (239)
T 2xwt_C 110 LGIFNTGLKMFPD---LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGY------------ 174 (239)
T ss_dssp EEEEEECCCSCCC---CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTT------------
T ss_pred EeCCCCCCccccc---cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHh------------
Confidence 6666666665433 24567777 8888888 88877777788889999 999999988855544
Q ss_pred hhccCCccCEEecCCCC-cCCCccccccCC-CCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCc
Q 007693 406 ALQNLNHLERLNLEQTQ-VSDATLFPLSTF-KELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDA 469 (593)
Q Consensus 406 ~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 469 (593)
.+.. ++|++|++++|+ +++..+..|..+ ++|+.|++++|+++++.+. .+++|+.|+++++
T Consensus 175 ~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 175 AFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp TTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred hcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 4555 789999999994 888777788888 8999999999999876543 6788999988876
No 97
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=2.8e-20 Score=187.07 Aligned_cols=185 Identities=19% Similarity=0.228 Sum_probs=155.8
Q ss_pred cEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEee
Q 007693 304 EHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDIS 383 (593)
Q Consensus 304 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls 383 (593)
+.++++++.++... . ...+.++.|++++|.+++.....+...+++|++|++++|.+++..+..|..+++|++|+|+
T Consensus 21 ~~l~c~~~~l~~iP-~---~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPNVP-Q---SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSSCC-S---SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCccC-c---cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 46777777776532 2 1225688888888888887766553278999999999999998888889999999999999
Q ss_pred CCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhh---hcCCC
Q 007693 384 NTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQL---SSLSK 460 (593)
Q Consensus 384 ~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~ 460 (593)
+|++.+..+. .|..+++|++|+|++|.+++..+..|..+++|+.|+|++|+++++.+..| ..+++
T Consensus 97 ~N~l~~~~~~------------~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~ 164 (361)
T 2xot_A 97 SNHLHTLDEF------------LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPK 164 (361)
T ss_dssp SSCCCEECTT------------TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTT
T ss_pred CCcCCcCCHH------------HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCc
Confidence 9999888776 68999999999999999999888899999999999999999999777666 67999
Q ss_pred CcEEEecCcccCcccccCccCCCC--CceEecCCCccCCHHHHHHH
Q 007693 461 LTNLSIRDAVLTNSGLGSFKPPRS--LKLLDLHGGWLLTEDAILQF 504 (593)
Q Consensus 461 L~~L~L~~n~l~~~~~~~~~~~~~--L~~L~l~~n~~~~~~~~~~~ 504 (593)
|+.|+|++|+|+++.+..+..++. ++.|++++|++.|+|.+.++
T Consensus 165 L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l~~~ 210 (361)
T 2xot_A 165 LMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQL 210 (361)
T ss_dssp CCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHHHHHH
T ss_pred CCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcCcHHH
Confidence 999999999999988777877776 48999999999999998765
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=4e-19 Score=172.76 Aligned_cols=177 Identities=23% Similarity=0.297 Sum_probs=135.0
Q ss_pred cCCCccEEeccCCCcchhhhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEE
Q 007693 277 ETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL 356 (593)
Q Consensus 277 ~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L 356 (593)
.+++|+.|++++|.+..++.+..+++|++|++++|.+++..+ +..+ ++|++|++++|.+++... ++.+++|++|
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l-~~L~~L~l~~n~l~~~~~---l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANL-KNLGWLFLDENKVKDLSS---LKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTC-TTCCEEECCSSCCCCGGG---GTTCTTCCEE
T ss_pred hcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccC-CCCCEEECCCCcCCCChh---hccCCCCCEE
Confidence 567788888888888777777788888888888888876554 4444 788888888888877543 3568888888
Q ss_pred EccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCC
Q 007693 357 SLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKE 436 (593)
Q Consensus 357 ~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 436 (593)
++++|.+++. ..+..+++|+.|++++|++.+. + .+..+++|++|++++|.+++..+ +..+++
T Consensus 118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~-------------~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~ 179 (291)
T 1h6t_A 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-T-------------VLSRLTKLDTLSLEDNQISDIVP--LAGLTK 179 (291)
T ss_dssp ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-G-------------GGGGCTTCSEEECCSSCCCCCGG--GTTCTT
T ss_pred ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-h-------------hhccCCCCCEEEccCCccccchh--hcCCCc
Confidence 8888888775 3577788888888888888765 2 47788888888888888887544 778888
Q ss_pred CcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcccccCc
Q 007693 437 LIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSF 479 (593)
Q Consensus 437 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 479 (593)
|+.|++++|.+++.. .+..+++|+.|++++|+++..+...+
T Consensus 180 L~~L~L~~N~i~~l~--~l~~l~~L~~L~l~~n~i~~~~~~~~ 220 (291)
T 1h6t_A 180 LQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKPINHQ 220 (291)
T ss_dssp CCEEECCSSCCCBCG--GGTTCTTCSEEEEEEEEEECCCEECC
T ss_pred cCEEECCCCcCCCCh--hhccCCCCCEEECcCCcccCCccccc
Confidence 888888888888753 47888888888888888877544433
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=1e-19 Score=176.98 Aligned_cols=190 Identities=21% Similarity=0.301 Sum_probs=163.7
Q ss_pred CCccEEeccCCCcchhhhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEc
Q 007693 279 SLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSL 358 (593)
Q Consensus 279 ~~L~~L~ls~n~l~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l 358 (593)
..+..+.+..+.+........+++|++|++++|.+++.. .+..+ ++|++|++++|.+++..+ +..+++|++|++
T Consensus 24 ~~~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~--~~~~l-~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l 97 (291)
T 1h6t_A 24 AETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ--GIQYL-PNVTKLFLNGNKLTDIKP---LANLKNLGWLFL 97 (291)
T ss_dssp HHHHHHHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCT--TGGGC-TTCCEEECCSSCCCCCGG---GTTCTTCCEEEC
T ss_pred HHHHHHHhcCCCcccccchhhcCcccEEEccCCCcccCh--hHhcC-CCCCEEEccCCccCCCcc---cccCCCCCEEEC
Confidence 445555677777777666778899999999999998653 34444 999999999999999876 478999999999
Q ss_pred cCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCc
Q 007693 359 SGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELI 438 (593)
Q Consensus 359 ~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 438 (593)
++|.+++.. .+..+++|++|++++|++.+. + .+..+++|+.|++++|.+++. ..+..+++|+
T Consensus 98 ~~n~l~~~~--~l~~l~~L~~L~L~~n~i~~~-~-------------~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~ 159 (291)
T 1h6t_A 98 DENKVKDLS--SLKDLKKLKSLSLEHNGISDI-N-------------GLVHLPQLESLYLGNNKITDI--TVLSRLTKLD 159 (291)
T ss_dssp CSSCCCCGG--GGTTCTTCCEEECTTSCCCCC-G-------------GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred CCCcCCCCh--hhccCCCCCEEECCCCcCCCC-h-------------hhcCCCCCCEEEccCCcCCcc--hhhccCCCCC
Confidence 999998853 488999999999999999875 2 478999999999999999985 6788999999
Q ss_pred EEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcccccCccCCCCCceEecCCCccC
Q 007693 439 HLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLL 496 (593)
Q Consensus 439 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~ 496 (593)
.|++++|++++..+ +..+++|+.|++++|.+++.. .+..+++|+.|++++|++.
T Consensus 160 ~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~--~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 160 TLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEEEEEEEEE
T ss_pred EEEccCCccccchh--hcCCCccCEEECCCCcCCCCh--hhccCCCCCEEECcCCccc
Confidence 99999999999766 899999999999999999863 4888999999999999983
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=2.8e-19 Score=165.03 Aligned_cols=181 Identities=16% Similarity=0.151 Sum_probs=141.6
Q ss_pred CcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhh
Q 007693 328 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTAL 407 (593)
Q Consensus 328 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~ 407 (593)
-+.++.+++.++..+. +-.++|++|++++|.+++..+..+..+++|++|++++|++.+..+. .|
T Consensus 9 ~~~v~c~~~~l~~~p~----~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------~~ 72 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPT----GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG------------VF 72 (208)
T ss_dssp TTEEECCSSCCSSCCS----CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT------------TT
T ss_pred CCEEEecCCCccCCCC----CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChh------------hc
Confidence 3566777777666543 2356788888888888877666678889999999999988877665 57
Q ss_pred ccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcccccCccCCCCCce
Q 007693 408 QNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKL 487 (593)
Q Consensus 408 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 487 (593)
..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|+.|++++|.+++..+..+..+++|+.
T Consensus 73 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 152 (208)
T 2o6s_A 73 NKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 152 (208)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred CCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccE
Confidence 88899999999999998877777888999999999999998887777888999999999999999887777888899999
Q ss_pred EecCCCccCCHHH-HHHHHhhCCcEEEEeeeccccCCCCCCCCCCCCCcchhhhh
Q 007693 488 LDLHGGWLLTEDA-ILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRAS 541 (593)
Q Consensus 488 L~l~~n~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 541 (593)
|++++|++.+.+. +.++.. ..|.+.|.+|.+++.+..
T Consensus 153 L~l~~N~~~~~~~~l~~L~~-----------------~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 153 IWLHDNPWDCTCPGIRYLSE-----------------WINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp EECCSCCBCCCTTTTHHHHH-----------------HHHHCTTTBBCTTSSBCT
T ss_pred EEecCCCeecCCCCHHHHHH-----------------HHHhCCceeeccCccccC
Confidence 9999998866442 222221 145567788887776654
No 101
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=7.7e-19 Score=164.37 Aligned_cols=163 Identities=20% Similarity=0.217 Sum_probs=142.1
Q ss_pred CCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHh
Q 007693 327 NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTA 406 (593)
Q Consensus 327 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~ 406 (593)
+.+.++.+++.++..+. +-.++|++|++++|.+++..+..|..+++|++|+|++|++....+. .
T Consensus 20 s~~~v~c~~~~l~~ip~----~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~------------~ 83 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPA----GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVG------------V 83 (229)
T ss_dssp ETTEEECTTSCCSSCCS----CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT------------T
T ss_pred eCCEeEccCCCcCccCC----CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChh------------h
Confidence 46678888888877664 3357899999999999988788889999999999999999877766 6
Q ss_pred hccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcccccCccCCCCCc
Q 007693 407 LQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLK 486 (593)
Q Consensus 407 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 486 (593)
|..+++|++|+|++|.+++..+..|..+++|++|+|++|+++. +|..+..+++|+.|++++|+|++..+..+..+++|+
T Consensus 84 ~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 162 (229)
T 3e6j_A 84 FDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLT 162 (229)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCS-CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccc-cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCC
Confidence 8999999999999999999877788999999999999999996 466789999999999999999998888899999999
Q ss_pred eEecCCCccCCHHH-HHHHHh
Q 007693 487 LLDLHGGWLLTEDA-ILQFCK 506 (593)
Q Consensus 487 ~L~l~~n~~~~~~~-~~~~~~ 506 (593)
.|++++|++.|+|. +.++..
T Consensus 163 ~L~l~~N~~~c~c~~~~~l~~ 183 (229)
T 3e6j_A 163 HAYLFGNPWDCECRDIMYLRN 183 (229)
T ss_dssp EEECTTSCBCTTBGGGHHHHH
T ss_pred EEEeeCCCccCCcchhHHHHH
Confidence 99999999998874 444433
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=1.3e-18 Score=185.19 Aligned_cols=198 Identities=21% Similarity=0.255 Sum_probs=159.4
Q ss_pred cceEeccCccccchhhHHhhhcCCCccEEeccCCCcchhhhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCC
Q 007693 256 LAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSN 335 (593)
Q Consensus 256 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~ 335 (593)
+..+.+..+.+..+.. ...++.|+.|++++|.+..++.+..+++|+.|+|++|.+++..+ +..+ ++|+.|+|++
T Consensus 23 l~~l~l~~~~i~~~~~---~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l-~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNL-KNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEEC---HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGC-TTCCEEECCS
T ss_pred HHHHhccCCCcccccc---hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccC-CCCCEEECcC
Confidence 3444555555554433 23668888888888888888788888999999999998887655 4444 8899999999
Q ss_pred CCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCE
Q 007693 336 TRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLER 415 (593)
Q Consensus 336 n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 415 (593)
|.+++.. . +..+++|++|++++|.+.+. ..+..+++|+.|+|++|.+.+. + .+..+++|+.
T Consensus 97 N~l~~l~--~-l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-~-------------~l~~l~~L~~ 157 (605)
T 1m9s_A 97 NKIKDLS--S-LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-T-------------VLSRLTKLDT 157 (605)
T ss_dssp SCCCCCT--T-STTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC-G-------------GGGSCTTCSE
T ss_pred CCCCCCh--h-hccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc-h-------------hhcccCCCCE
Confidence 9888754 2 36789999999999999875 3578899999999999999876 2 4889999999
Q ss_pred EecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcccccCccCC
Q 007693 416 LNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPP 482 (593)
Q Consensus 416 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 482 (593)
|+|++|.+++..+ +..+++|+.|+|++|.++++ ..+..+++|+.|+|++|++++.+...+..+
T Consensus 158 L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~~~~~l 220 (605)
T 1m9s_A 158 LSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNL 220 (605)
T ss_dssp EECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCCCCCSSC
T ss_pred EECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcccccccE
Confidence 9999999998665 88999999999999999986 368999999999999999988755544443
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=1e-18 Score=186.00 Aligned_cols=193 Identities=21% Similarity=0.293 Sum_probs=167.3
Q ss_pred cCCCccEEeccCCCcchhhhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEE
Q 007693 277 ETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL 356 (593)
Q Consensus 277 ~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L 356 (593)
.+..+..+.+..+.+..+..+..+++|+.|++++|.+.+.. .+..+ ++|+.|+|++|.+++..+ +..+++|+.|
T Consensus 19 ~l~~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~--~l~~l-~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L 92 (605)
T 1m9s_A 19 AFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ--GIQYL-PNVTKLFLNGNKLTDIKP---LTNLKNLGWL 92 (605)
T ss_dssp HHHHHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCT--TGGGC-TTCCEEECTTSCCCCCGG---GGGCTTCCEE
T ss_pred HHHHHHHHhccCCCcccccchhcCCCCCEEECcCCCCCCCh--HHccC-CCCCEEEeeCCCCCCChh---hccCCCCCEE
Confidence 34456667788888887767788899999999999998653 35555 999999999999999876 3679999999
Q ss_pred EccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCC
Q 007693 357 SLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKE 436 (593)
Q Consensus 357 ~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 436 (593)
+|++|.+.+.. .+..+++|+.|+|++|.+.+. + .+..+++|+.|+|++|.+++. ..+..+++
T Consensus 93 ~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l-~-------------~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~ 154 (605)
T 1m9s_A 93 FLDENKIKDLS--SLKDLKKLKSLSLEHNGISDI-N-------------GLVHLPQLESLYLGNNKITDI--TVLSRLTK 154 (605)
T ss_dssp ECCSSCCCCCT--TSTTCTTCCEEECTTSCCCCC-G-------------GGGGCTTCSEEECCSSCCCCC--GGGGSCTT
T ss_pred ECcCCCCCCCh--hhccCCCCCEEEecCCCCCCC-c-------------cccCCCccCEEECCCCccCCc--hhhcccCC
Confidence 99999998753 688999999999999999874 2 488999999999999999985 67889999
Q ss_pred CcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcccccCccCCCCCceEecCCCccCC
Q 007693 437 LIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT 497 (593)
Q Consensus 437 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 497 (593)
|+.|+|++|++++..+ +..+++|+.|+|++|.|++. ..+..+++|+.|+|++|++..
T Consensus 155 L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 155 LDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred CCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 9999999999999876 89999999999999999986 458889999999999999833
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.76 E-value=9.6e-19 Score=161.39 Aligned_cols=162 Identities=17% Similarity=0.182 Sum_probs=99.4
Q ss_pred CCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEE
Q 007693 301 KALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFI 380 (593)
Q Consensus 301 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L 380 (593)
++|++|++++|.+++.....+..+ ++|++|++++|.+++.....+ +.+++|++|++++|.+++..+..+..+++|++|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDEL-TSLTQLYLGGNKLQSLPNGVF-NKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTC-TTCSEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEcCCCccCcCChhhhccc-ccCcEEECCCCccCccChhhc-CCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence 355555555555554333333333 556666666655555444333 446667777777666666555556666777777
Q ss_pred EeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhcCCC
Q 007693 381 DISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSK 460 (593)
Q Consensus 381 ~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 460 (593)
++++|++.+..+. .+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+ .+++
T Consensus 106 ~L~~N~l~~~~~~------------~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~ 166 (208)
T 2o6s_A 106 ALNTNQLQSLPDG------------VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPG 166 (208)
T ss_dssp ECCSSCCCCCCTT------------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTT
T ss_pred EcCCCcCcccCHh------------HhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCC
Confidence 7777777665554 46667777777777777776555556667777777777776553 3456
Q ss_pred CcEEEecCcccCcccccCccCCC
Q 007693 461 LTNLSIRDAVLTNSGLGSFKPPR 483 (593)
Q Consensus 461 L~~L~L~~n~l~~~~~~~~~~~~ 483 (593)
|+.|+++.|++++..|..+..++
T Consensus 167 l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 167 IRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp THHHHHHHHHCTTTBBCTTSSBC
T ss_pred HHHHHHHHHhCCceeeccCcccc
Confidence 77777777777776666655443
No 105
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.75 E-value=1.5e-19 Score=180.96 Aligned_cols=237 Identities=16% Similarity=0.112 Sum_probs=129.0
Q ss_pred eeeccccCCcCCCC--CCCCcEEEcCCCcccchhccc-CCCCCcceEeccCccccchhhHHhhhcCCCccE-EeccCCCc
Q 007693 216 FLNLAWTGVTKLPN--ISSLECLNLSNCTIDSILEGN-ENKAPLAKISLAGTTFINEREAFLYIETSLLSF-LDVSNSSL 291 (593)
Q Consensus 216 ~L~l~~n~l~~l~~--l~~L~~L~l~~n~l~~l~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~-L~ls~n~l 291 (593)
+++.++++++.+|. .+++++|++++|+++.+|+.. ..+++|++|++++|.+.+..+...+.+++++.. +.+++|++
T Consensus 13 ~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l 92 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL 92 (350)
T ss_dssp EEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTC
T ss_pred EEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcc
Confidence 44555556666552 245666666666666666543 356666666666665544322222334444332 33333444
Q ss_pred chhhhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccC-CCCChHHHHH
Q 007693 292 SRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG-TQIDDYAISY 370 (593)
Q Consensus 292 ~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~-n~i~~~~~~~ 370 (593)
+.+ .+..+..+ ++|++|++++|.++......+ ....++..+++.+ +.+....+..
T Consensus 93 ~~l----------------------~~~~f~~l-~~L~~L~l~~n~l~~~~~~~~-~~~~~l~~l~l~~~~~i~~l~~~~ 148 (350)
T 4ay9_X 93 LYI----------------------NPEAFQNL-PNLQYLLISNTGIKHLPDVHK-IHSLQKVLLDIQDNINIHTIERNS 148 (350)
T ss_dssp CEE----------------------CTTSBCCC-TTCCEEEEEEECCSSCCCCTT-CCBSSCEEEEEESCTTCCEECTTS
T ss_pred ccc----------------------Cchhhhhc-cccccccccccccccCCchhh-cccchhhhhhhccccccccccccc
Confidence 443 33333333 445555555554444333222 1233455666644 3455444444
Q ss_pred hhcC-CCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCC-CCcCCCccccccCCCCCcEEecCCCCCC
Q 007693 371 MSMM-PSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQ-TQVSDATLFPLSTFKELIHLSLRNASLT 448 (593)
Q Consensus 371 l~~~-~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 448 (593)
|..+ ..++.|++++|+++...+. .| ...+|++|++++ |.++.+.+..|..+++|++|++++|+|+
T Consensus 149 f~~~~~~l~~L~L~~N~i~~i~~~------------~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 149 FVGLSFESVILWLNKNGIQEIHNS------------AF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp STTSBSSCEEEECCSSCCCEECTT------------SS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred hhhcchhhhhhccccccccCCChh------------hc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence 4443 3577777777777765544 23 345677787764 5666655566778888888888888887
Q ss_pred chhHHhhhcCCCCcEEEecCc-ccCcccccCccCCCCCceEecCCCc
Q 007693 449 DVSLHQLSSLSKLTNLSIRDA-VLTNSGLGSFKPPRSLKLLDLHGGW 494 (593)
Q Consensus 449 ~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~L~~L~l~~n~ 494 (593)
.+.+..| .+|+.|.+.++ .++.. | .+..+++|+.+++.++.
T Consensus 216 ~lp~~~~---~~L~~L~~l~~~~l~~l-P-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 216 SLPSYGL---ENLKKLRARSTYNLKKL-P-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp CCCSSSC---TTCCEEECTTCTTCCCC-C-CTTTCCSCCEEECSCHH
T ss_pred ccChhhh---ccchHhhhccCCCcCcC-C-CchhCcChhhCcCCCCc
Confidence 7655433 44555554443 34433 2 36667888888887544
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=3.2e-18 Score=158.97 Aligned_cols=154 Identities=17% Similarity=0.231 Sum_probs=131.7
Q ss_pred cEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEee
Q 007693 304 EHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDIS 383 (593)
Q Consensus 304 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls 383 (593)
+.+++++|.++... . .....+++|++++|.+++..+...++.+++|++|++++|.+++..+..|..+++|++|+|+
T Consensus 14 ~~l~~s~n~l~~iP-~---~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLNKIP-E---HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCSSCC-S---CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcccCc-c---CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 47777777776532 2 1225678888888888877543333678999999999999998887789999999999999
Q ss_pred CCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhcCCCCcE
Q 007693 384 NTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTN 463 (593)
Q Consensus 384 ~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 463 (593)
+|.+.+..+. .|..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..|..|..+++|+.
T Consensus 90 ~N~l~~~~~~------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 157 (220)
T 2v70_A 90 SNRLENVQHK------------MFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLST 157 (220)
T ss_dssp SSCCCCCCGG------------GGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCE
T ss_pred CCccCccCHh------------HhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCE
Confidence 9999988877 6899999999999999999988899999999999999999999988899999999999
Q ss_pred EEecCcccCc
Q 007693 464 LSIRDAVLTN 473 (593)
Q Consensus 464 L~L~~n~l~~ 473 (593)
|++++|.+..
T Consensus 158 L~L~~N~l~c 167 (220)
T 2v70_A 158 LNLLANPFNC 167 (220)
T ss_dssp EECCSCCEEC
T ss_pred EEecCcCCcC
Confidence 9999999875
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.74 E-value=7.2e-18 Score=177.47 Aligned_cols=194 Identities=16% Similarity=0.202 Sum_probs=108.6
Q ss_pred CcEEEcCCCcccchhcccCCCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcchhhhcccCCCccEEEccCCC
Q 007693 233 LECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSM 312 (593)
Q Consensus 233 L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~L~~n~ 312 (593)
++.|++++|.++++|..+. ++|++|++++|.+..+| ..+++|++|++++|.+++++.+.. +|++|++++|.
T Consensus 61 L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip-----~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~ 131 (571)
T 3cvr_A 61 FSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP-----ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQ 131 (571)
T ss_dssp CSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC-----CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSC
T ss_pred ccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc-----cccCCCCEEEccCCCCCCcchhhc--CCCEEECCCCc
Confidence 4444444444444443332 34555555555544443 123555555555555555433222 66666666666
Q ss_pred CChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCcccc
Q 007693 313 IGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQ 392 (593)
Q Consensus 313 l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~ 392 (593)
+++... .+++|+.|++++|.+++.+. .+++|++|++++|.+++.+. +. ++|+.|+|++|+++..+.
T Consensus 132 l~~lp~-----~l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp~ 197 (571)
T 3cvr_A 132 LTMLPE-----LPALLEYINADNNQLTMLPE-----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESLPA 197 (571)
T ss_dssp CSCCCC-----CCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSCCC
T ss_pred CCCCCC-----cCccccEEeCCCCccCcCCC-----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCchhh
Confidence 655222 22666777777776665433 35667777777777666332 33 677777777777764332
Q ss_pred ccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhcCC
Q 007693 393 QVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLS 459 (593)
Q Consensus 393 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 459 (593)
.. . .-+...+.|+.|+|++|.|+. +|..+..+++|+.|+|++|.+++..|..+..++
T Consensus 198 -~~-~-------~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 198 -VP-V-------RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp -CC----------------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred -HH-H-------hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 10 0 001222334888888888876 566666688888888888888887777776543
No 108
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.73 E-value=8.6e-19 Score=175.41 Aligned_cols=192 Identities=15% Similarity=0.090 Sum_probs=112.6
Q ss_pred CEEEccCCccCccchHhhcCCCCCCeeeccccCCcCCC-----CCCCCcEEEcCCCccc-chhcccC-CCCCcce-Eecc
Q 007693 191 EYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTID-SILEGNE-NKAPLAK-ISLA 262 (593)
Q Consensus 191 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~-----~l~~L~~L~l~~n~l~-~l~~~~~-~~~~L~~-L~l~ 262 (593)
++++.++++++.. |..+ .+++++|++++|+|+.++ ++++|++|+|++|.+. .++...+ .++++.+ +.+.
T Consensus 12 ~~v~C~~~~Lt~i-P~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEI-PSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSC-CTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCcc-CcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 5778888888854 4433 368999999999998654 6899999999999985 4666554 7888775 5566
Q ss_pred CccccchhhHHhhhcCCCccEEeccCCCcchhhh--cccCCCccEEEccC-CCCChhHHHHHHhccCCCcEEEcCCCCCC
Q 007693 263 GTTFINEREAFLYIETSLLSFLDVSNSSLSRFCF--LTQMKALEHLDLSS-SMIGDDSVEMVACVGANLRNLNLSNTRFS 339 (593)
Q Consensus 263 ~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~--l~~~~~L~~L~L~~-n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 339 (593)
+|.+..+++. .+..+++|++|++++|.+..++. +....++..+++.+ +.+.......+......++.|++++|.++
T Consensus 89 ~N~l~~l~~~-~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 89 ANNLLYINPE-AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp ETTCCEECTT-SBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred CCcccccCch-hhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 7888887654 34577888888888887776632 23334555666644 34443333222222233444555554444
Q ss_pred CchHHHHHcCCCCCcEEEccC-CCCChHHHHHhhcCCCCCEEEeeCCccC
Q 007693 340 SAGVGILAGHLPNLEILSLSG-TQIDDYAISYMSMMPSLKFIDISNTDIK 388 (593)
Q Consensus 340 ~~~~~~~~~~~~~L~~L~l~~-n~i~~~~~~~l~~~~~L~~L~Ls~n~i~ 388 (593)
......+ ...+|+++++++ |.++...+..|..+++|++|++++|+++
T Consensus 168 ~i~~~~f--~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 168 EIHNSAF--NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp EECTTSS--TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred CCChhhc--cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence 4333222 123344444432 3333333333334444444444444443
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=2e-18 Score=165.00 Aligned_cols=171 Identities=18% Similarity=0.255 Sum_probs=104.2
Q ss_pred CCCccEEeccCCCcchhhhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEE
Q 007693 278 TSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILS 357 (593)
Q Consensus 278 ~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ 357 (593)
+.++..++++++.++++..+..+++|++|++++|.+++.. .+..+ ++|++|++++|.+++..+ ++.+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~--~l~~l-~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA--GMQFF-TNLKELHLSHNQISDLSP---LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT--TGGGC-TTCCEEECCSSCCCCCGG---GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch--HHhhC-CCCCEEECCCCccCCChh---hccCCCCCEEE
Confidence 4445556666666665555566666666666666665432 33333 666666666666666554 24566666666
Q ss_pred ccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCC
Q 007693 358 LSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKEL 437 (593)
Q Consensus 358 l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 437 (593)
+++|++++... +.. ++|+.|++++|++++. + .+..+++|++|++++|++++. ..+..+++|
T Consensus 92 L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~-~-------------~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L 152 (263)
T 1xeu_A 92 VNRNRLKNLNG--IPS-ACLSRLFLDNNELRDT-D-------------SLIHLKNLEILSIRNNKLKSI--VMLGFLSKL 152 (263)
T ss_dssp CCSSCCSCCTT--CCC-SSCCEEECCSSCCSBS-G-------------GGTTCTTCCEEECTTSCCCBC--GGGGGCTTC
T ss_pred CCCCccCCcCc--ccc-CcccEEEccCCccCCC-h-------------hhcCcccccEEECCCCcCCCC--hHHccCCCC
Confidence 66666665321 222 6667777777666653 1 256666677777777766663 246666677
Q ss_pred cEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCccc
Q 007693 438 IHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSG 475 (593)
Q Consensus 438 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 475 (593)
+.|++++|++++. ..+..+++|+.|++++|+++..+
T Consensus 153 ~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 153 EVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp CEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred CEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence 7777777776665 45666677777777777666553
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=1.5e-17 Score=151.82 Aligned_cols=149 Identities=18% Similarity=0.243 Sum_probs=104.0
Q ss_pred CCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHH
Q 007693 326 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLT 405 (593)
Q Consensus 326 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~ 405 (593)
++|++|++++|.+++.+ . ...+++|++|++++|.++.. ..+..+++|++|++++|.+.+..+.
T Consensus 44 ~~L~~L~l~~n~i~~l~--~-l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~------------ 106 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT--G-IEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIP------------ 106 (197)
T ss_dssp HTCCEEEEESSCCSCCT--T-GGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSC------------
T ss_pred CCccEEeccCCCccChH--H-HhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccCh------------
Confidence 56667777776666544 1 24567777777777766543 2466777777777777777765554
Q ss_pred hhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCC-CCchhHHhhhcCCCCcEEEecCcccCcccccCccCCCC
Q 007693 406 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNAS-LTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRS 484 (593)
Q Consensus 406 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 484 (593)
.+..+++|++|++++|.+++..+..+..+++|++|++++|+ +++.. .+..+++|+.|++++|++++.. .+..+++
T Consensus 107 ~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~ 182 (197)
T 4ezg_A 107 NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPK 182 (197)
T ss_dssp CCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSS
T ss_pred hhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH--HhccCCC
Confidence 46777778888888887777666777777788888888877 66643 5777788888888888877643 5666778
Q ss_pred CceEecCCCcc
Q 007693 485 LKLLDLHGGWL 495 (593)
Q Consensus 485 L~~L~l~~n~~ 495 (593)
|+.|++++|++
T Consensus 183 L~~L~l~~N~i 193 (197)
T 4ezg_A 183 LNQLYAFSQTI 193 (197)
T ss_dssp CCEEEECBC--
T ss_pred CCEEEeeCccc
Confidence 88888888876
No 111
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=7.6e-18 Score=167.08 Aligned_cols=125 Identities=19% Similarity=0.255 Sum_probs=96.2
Q ss_pred CCCcEEEccCCCCChHHHHHhh-cCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccc
Q 007693 351 PNLEILSLSGTQIDDYAISYMS-MMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLF 429 (593)
Q Consensus 351 ~~L~~L~l~~n~i~~~~~~~l~-~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 429 (593)
.++..+.+.++ +.......+. .+++|+.++|++|++....+. +|.+|++|+.+++.+| ++.+...
T Consensus 202 ~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~------------aF~~~~~L~~l~l~~n-i~~I~~~ 267 (329)
T 3sb4_A 202 RDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDF------------TFAQKKYLLKIKLPHN-LKTIGQR 267 (329)
T ss_dssp GGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTT------------TTTTCTTCCEEECCTT-CCEECTT
T ss_pred cccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHh------------hhhCCCCCCEEECCcc-cceehHH
Confidence 45666666654 3333333333 478888888888888776666 6888888888888887 7777777
Q ss_pred cccCCCCCc-EEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcccccCccCCCCCceEec
Q 007693 430 PLSTFKELI-HLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDL 490 (593)
Q Consensus 430 ~~~~l~~L~-~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l 490 (593)
+|.++++|+ .+++.+ .++.+.+.+|.+|++|+.|++++|.++.++..+|.++++|+.+..
T Consensus 268 aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 268 VFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred HhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 888888888 888887 788877888888899999998888888888888888888888753
No 112
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=1.1e-17 Score=165.79 Aligned_cols=280 Identities=16% Similarity=0.169 Sum_probs=202.9
Q ss_pred CCCCCEEEcCCCCCChhhHHHhhc-CCCCCEEEccCCccC--ccchHhhcCCCCCCeeeccccCCcC--CCC--------
Q 007693 163 LQNLSVLDLGGLPVTDLVLRSLQV-LTKLEYLDLWGSQVS--NRGAAVLKMFPRLSFLNLAWTGVTK--LPN-------- 229 (593)
Q Consensus 163 l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~l~~n~l~~--l~~-------- 229 (593)
+++++.|.++++ +.......+.. +++|+.|+|++|.+. ..... .++.+..+.+..+.+.. +..
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g 99 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFVPAYAFSNVVNGVTKG 99 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEECTTTTEEEETTEEEE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccc---cccccccccccccccCHHHhcccccccccc
Confidence 457888888874 44444455555 789999999999887 22221 22224445555554442 446
Q ss_pred CCCCcEEEcCCCcccchhcccC-CCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCc----chh--hhcccCCC
Q 007693 230 ISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSL----SRF--CFLTQMKA 302 (593)
Q Consensus 230 l~~L~~L~l~~n~l~~l~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l----~~~--~~l~~~~~ 302 (593)
+++|+.+++.+ .++.+++..+ .|++|++|++.+|.+..++.. .|..+.++..+....+.. ..+ ..+..+..
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~-aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPE-ALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTT-SSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchh-hhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 88999999988 8888887766 889999999999988776654 455677777777665322 112 34556677
Q ss_pred cc-EEEccCCCCChhHHHHHHhc---cCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCC
Q 007693 303 LE-HLDLSSSMIGDDSVEMVACV---GANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLK 378 (593)
Q Consensus 303 L~-~L~L~~n~l~~~~~~~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~ 378 (593)
|+ .+.+....- .+..+... ..++..+.+.++ +.......+...|++|+.+++++|.++.+...+|.++++|+
T Consensus 178 L~~~i~~~~~~~---l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~ 253 (329)
T 3sb4_A 178 LETTIQVGAMGK---LEDEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLL 253 (329)
T ss_dssp CEEEEEECTTCC---HHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCC
T ss_pred cceeEEecCCCc---HHHHHhhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCC
Confidence 77 566654321 22222211 256777777765 44444445545689999999999999988888999999999
Q ss_pred EEEeeCCccCccccccccchhhhhhHHhhccCCccC-EEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhc
Q 007693 379 FIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLE-RLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSS 457 (593)
Q Consensus 379 ~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 457 (593)
.|++.+| +....+. +|.+|++|+ .+++.+ .++.+.+.+|.+|++|+.+++++|.++.+.+.+|.+
T Consensus 254 ~l~l~~n-i~~I~~~------------aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~ 319 (329)
T 3sb4_A 254 KIKLPHN-LKTIGQR------------VFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGN 319 (329)
T ss_dssp EEECCTT-CCEECTT------------TTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCT
T ss_pred EEECCcc-cceehHH------------HhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcC
Confidence 9999987 6666555 799999999 999998 788877889999999999999999999999899999
Q ss_pred CCCCcEEEe
Q 007693 458 LSKLTNLSI 466 (593)
Q Consensus 458 l~~L~~L~L 466 (593)
+++|+.++.
T Consensus 320 ~~~L~~ly~ 328 (329)
T 3sb4_A 320 GVPSKLIYK 328 (329)
T ss_dssp TCCCCEEEC
T ss_pred Ccchhhhcc
Confidence 999999864
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.72 E-value=5.4e-18 Score=170.30 Aligned_cols=157 Identities=23% Similarity=0.302 Sum_probs=107.2
Q ss_pred CccEEEccCCCCChhHHHHHH-hccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEE
Q 007693 302 ALEHLDLSSSMIGDDSVEMVA-CVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFI 380 (593)
Q Consensus 302 ~L~~L~L~~n~l~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L 380 (593)
.++.|+|++|.+++.....+. .+ ++|++|++++|.+++..+..+ ..+++|++|++++|.++...+..|..+++|+.|
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l-~~L~~L~L~~N~i~~i~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRL-TNLHSLLLSHNHLNFISSEAF-VPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCC-TTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCCEEECCCCCCCccChhhhhhcc-cccCEEECCCCcCCccChhhc-cCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEE
Confidence 455555555555554443333 22 666666666666666555444 457777777777777777666667777888888
Q ss_pred EeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccc---cCCCCCcEEecCCCCCCchhHHhhhc
Q 007693 381 DISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPL---STFKELIHLSLRNASLTDVSLHQLSS 457 (593)
Q Consensus 381 ~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~l~~ 457 (593)
+|++|++.+..+. .|..+++|++|+|++|.+++..+..| ..+++|+.|+|++|+|+.+.+..+..
T Consensus 118 ~L~~N~i~~~~~~------------~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~ 185 (361)
T 2xot_A 118 LLYNNHIVVVDRN------------AFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQK 185 (361)
T ss_dssp ECCSSCCCEECTT------------TTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHH
T ss_pred ECCCCcccEECHH------------HhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhh
Confidence 8888887776665 57777888888888888877555445 45778888888888888777777777
Q ss_pred CCC--CcEEEecCcccC
Q 007693 458 LSK--LTNLSIRDAVLT 472 (593)
Q Consensus 458 l~~--L~~L~L~~n~l~ 472 (593)
++. ++.|+|++|++.
T Consensus 186 l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 186 LPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp SCHHHHTTEECCSSCEE
T ss_pred ccHhhcceEEecCCCcc
Confidence 776 377888888765
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.71 E-value=1.2e-17 Score=155.13 Aligned_cols=153 Identities=15% Similarity=0.205 Sum_probs=129.1
Q ss_pred cEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEee
Q 007693 304 EHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDIS 383 (593)
Q Consensus 304 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls 383 (593)
+.++++++.++.... ...+++++|++++|.+++.....+ +.+++|++|++++|.+++..+..|.++++|++|+|+
T Consensus 14 ~~v~c~~~~l~~iP~----~l~~~l~~L~l~~n~i~~i~~~~~-~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPT----NLPETITEIRLEQNTIKVIPPGAF-SPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTTSCCSSCCS----SCCTTCCEEECCSSCCCEECTTSS-TTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred CEEEcCCCCcCcCCC----ccCcCCCEEECCCCcCCCcCHhHh-hCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence 456666666664321 122678888888888887766555 568899999999999998888889999999999999
Q ss_pred CCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhcCCCCcE
Q 007693 384 NTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTN 463 (593)
Q Consensus 384 ~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 463 (593)
+|.+...++. .|..+++|++|+|++|.+++..+..|..+++|++|+|++|+++++.+..|..+++|+.
T Consensus 89 ~N~l~~l~~~------------~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 156 (220)
T 2v9t_B 89 GNKITELPKS------------LFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQT 156 (220)
T ss_dssp SSCCCCCCTT------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred CCcCCccCHh------------HccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCE
Confidence 9999987766 6889999999999999999988889999999999999999999988888999999999
Q ss_pred EEecCcccCc
Q 007693 464 LSIRDAVLTN 473 (593)
Q Consensus 464 L~L~~n~l~~ 473 (593)
|++++|++..
T Consensus 157 L~L~~N~~~c 166 (220)
T 2v9t_B 157 MHLAQNPFIC 166 (220)
T ss_dssp EECCSSCEEC
T ss_pred EEeCCCCcCC
Confidence 9999999864
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=1.8e-17 Score=151.23 Aligned_cols=153 Identities=23% Similarity=0.362 Sum_probs=107.1
Q ss_pred cCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCC
Q 007693 299 QMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLK 378 (593)
Q Consensus 299 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~ 378 (593)
.+++|++|++++|.+++.. .+..+ ++|++|++++|.++... . +..+++|++|++++|.+++..+..++.+++|+
T Consensus 42 ~l~~L~~L~l~~n~i~~l~--~l~~l-~~L~~L~l~~n~~~~~~--~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT--GIEYA-HNIKDLTINNIHATNYN--P-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT--TGGGC-TTCSEEEEESCCCSCCG--G-GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hcCCccEEeccCCCccChH--HHhcC-CCCCEEEccCCCCCcch--h-hhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 4455666666666665322 23333 66666666666555443 1 25678888888888888776666777888888
Q ss_pred EEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCC-cCCCccccccCCCCCcEEecCCCCCCchhHHhhhc
Q 007693 379 FIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQ-VSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSS 457 (593)
Q Consensus 379 ~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 457 (593)
+|++++|.+.+..+. .+..+++|++|++++|. +++. + .+..+++|++|++++|++++.. .+..
T Consensus 116 ~L~Ls~n~i~~~~~~------------~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~~~--~l~~ 179 (197)
T 4ezg_A 116 LLDISHSAHDDSILT------------KINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHDYR--GIED 179 (197)
T ss_dssp EEECCSSBCBGGGHH------------HHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCCCT--TGGG
T ss_pred EEEecCCccCcHhHH------------HHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcChH--Hhcc
Confidence 888888888765555 57788888888888887 6653 3 5778888888888888888754 6788
Q ss_pred CCCCcEEEecCcccCc
Q 007693 458 LSKLTNLSIRDAVLTN 473 (593)
Q Consensus 458 l~~L~~L~L~~n~l~~ 473 (593)
+++|+.|++++|+|.+
T Consensus 180 l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 180 FPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CSSCCEEEECBC----
T ss_pred CCCCCEEEeeCcccCC
Confidence 8888888888888764
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=2e-17 Score=158.08 Aligned_cols=170 Identities=24% Similarity=0.322 Sum_probs=146.4
Q ss_pred cCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCC
Q 007693 299 QMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLK 378 (593)
Q Consensus 299 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~ 378 (593)
.+.++..++++++.+++.. .+..+ ++|++|++++|.++... .+ +.+++|++|++++|.+++..+ +..+++|+
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l-~~L~~L~l~~n~i~~l~--~l-~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~ 88 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKEL-SGVQNFNGDNSNIQSLA--GM-QFFTNLKELHLSHNQISDLSP--LKDLTKLE 88 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHH-TTCSEEECTTSCCCCCT--TG-GGCTTCCEEECCSSCCCCCGG--GTTCSSCC
T ss_pred HHHHHHHHHhcCCCccccc--chhhc-CcCcEEECcCCCcccch--HH-hhCCCCCEEECCCCccCCChh--hccCCCCC
Confidence 4566778889999988755 34455 89999999999998875 23 679999999999999998765 88999999
Q ss_pred EEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhcC
Q 007693 379 FIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSL 458 (593)
Q Consensus 379 ~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 458 (593)
.|++++|++.+..+. .. ++|++|++++|.+++. ..+..+++|+.|++++|++++.. .+..+
T Consensus 89 ~L~L~~N~l~~l~~~--------------~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~--~l~~l 149 (263)
T 1xeu_A 89 ELSVNRNRLKNLNGI--------------PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV--MLGFL 149 (263)
T ss_dssp EEECCSSCCSCCTTC--------------CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG--GGGGC
T ss_pred EEECCCCccCCcCcc--------------cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh--HHccC
Confidence 999999999875433 23 8999999999999984 46889999999999999999963 68999
Q ss_pred CCCcEEEecCcccCcccccCccCCCCCceEecCCCccCC
Q 007693 459 SKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT 497 (593)
Q Consensus 459 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 497 (593)
++|+.|++++|++++. ..+..+++|+.|++++|++.+
T Consensus 150 ~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 150 SKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp TTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred CCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 9999999999999987 678889999999999999844
No 117
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.71 E-value=7.9e-17 Score=169.56 Aligned_cols=165 Identities=16% Similarity=0.146 Sum_probs=105.2
Q ss_pred CCCcEEEccCCCCChhHHHHhcCCCCCCEEEcCCCCCChhhHHHhhcCCCCCEEEccCCccCccchHhhcCCCCCCeeec
Q 007693 140 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNL 219 (593)
Q Consensus 140 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 219 (593)
++|++|++++|.++..+ ..+++|++|++++|.+++. |. +.. +|++|++++|.+++... .+++|+.|++
T Consensus 80 ~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~i-p~-l~~--~L~~L~Ls~N~l~~lp~----~l~~L~~L~L 147 (571)
T 3cvr_A 80 PQITVLEITQNALISLP----ELPASLEYLDACDNRLSTL-PE-LPA--SLKHLDVDNNQLTMLPE----LPALLEYINA 147 (571)
T ss_dssp TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCC-CC-CCT--TCCEEECCSSCCSCCCC----CCTTCCEEEC
T ss_pred CCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCc-ch-hhc--CCCEEECCCCcCCCCCC----cCccccEEeC
Confidence 44555555555554322 3345555555555555552 22 322 56666666666655322 4566666666
Q ss_pred cccCCcCCC-CCCCCcEEEcCCCcccchhcccCCCCCcceEeccCccccchhhHHhhhcCCCc-------cEEeccCCCc
Q 007693 220 AWTGVTKLP-NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLL-------SFLDVSNSSL 291 (593)
Q Consensus 220 ~~n~l~~l~-~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L-------~~L~ls~n~l 291 (593)
++|.++.++ .+++|++|++++|.++.+|. +. ++|+.|++++|.+..+|. +. . +| +.|++++|.+
T Consensus 148 s~N~l~~lp~~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~--~--~L~~~~~~L~~L~Ls~N~l 219 (571)
T 3cvr_A 148 DNNQLTMLPELPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-VP--V--RNHHSEETEIFFRCRENRI 219 (571)
T ss_dssp CSSCCSCCCCCCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-CC------------CCEEEECCSSCC
T ss_pred CCCccCcCCCcCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-HH--H--hhhcccccceEEecCCCcc
Confidence 666666655 34577777777777777766 33 778888888887776665 22 1 55 8888888888
Q ss_pred chh-hhcccCCCccEEEccCCCCChhHHHHHHhc
Q 007693 292 SRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACV 324 (593)
Q Consensus 292 ~~~-~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~ 324 (593)
+.+ ..+..+++|++|++++|.+++..+..+..+
T Consensus 220 ~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 220 THIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred eecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 877 446678899999999999988888777654
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=8.5e-18 Score=152.60 Aligned_cols=143 Identities=15% Similarity=0.195 Sum_probs=124.2
Q ss_pred CcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCcccccc
Q 007693 353 LEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLS 432 (593)
Q Consensus 353 L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 432 (593)
-+++++++|.++..+. .+ .++|++|++++|.+.+..+. ..+..+++|++|+|++|.+++..+..|.
T Consensus 10 ~~~l~~s~~~l~~ip~-~~--~~~l~~L~l~~n~i~~~~~~-----------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 75 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPR-DI--PLHTTELLLNDNELGRISSD-----------GLFGRLPHLVKLELKRNQLTGIEPNAFE 75 (192)
T ss_dssp TTEEECTTSCCSSCCS-CC--CTTCSEEECCSCCCCSBCCS-----------CSGGGCTTCCEEECCSSCCCCBCTTTTT
T ss_pred CCEEEcCCCCcCcCcc-CC--CCCCCEEECCCCcCCccCCc-----------cccccCCCCCEEECCCCCCCCcCHhHcC
Confidence 3678888887765432 22 34899999999999887764 1488999999999999999998889999
Q ss_pred CCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcccccCccCCCCCceEecCCCccCCHHHHHHHHhhCC
Q 007693 433 TFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHP 509 (593)
Q Consensus 433 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 509 (593)
.+++|++|+|++|++++..+..|.++++|++|++++|+|++..+..+..+++|+.|++++|++.|++.+.++..++.
T Consensus 76 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~ 152 (192)
T 1w8a_A 76 GASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLR 152 (192)
T ss_dssp TCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHH
T ss_pred CcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHH
Confidence 99999999999999999888889999999999999999999999999999999999999999999999888877654
No 119
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.70 E-value=3.5e-17 Score=148.46 Aligned_cols=141 Identities=15% Similarity=0.171 Sum_probs=123.3
Q ss_pred CcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCcccccc
Q 007693 353 LEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLS 432 (593)
Q Consensus 353 L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 432 (593)
-+.+++++|.++..+. . -.++|++|++++|.+...+ . .|..+++|++|+|++|.+++..+..|.
T Consensus 12 ~~~l~~~~~~l~~ip~-~--~~~~l~~L~L~~n~i~~ip-~------------~~~~l~~L~~L~Ls~N~i~~i~~~~f~ 75 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPK-G--IPRDVTELYLDGNQFTLVP-K------------ELSNYKHLTLIDLSNNRISTLSNQSFS 75 (193)
T ss_dssp TTEEECTTSCCSSCCS-C--CCTTCCEEECCSSCCCSCC-G------------GGGGCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCEEEcCCCCCCcCCC-C--CCCCCCEEECCCCcCchhH-H------------HhhcccCCCEEECCCCcCCEeCHhHcc
Confidence 3577888887775432 2 2468999999999998554 4 589999999999999999998888899
Q ss_pred CCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcccccCccCCCCCceEecCCCccCCHHHHHHHHhhCC
Q 007693 433 TFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHP 509 (593)
Q Consensus 433 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 509 (593)
.+++|++|+|++|+++++.+..|.++++|+.|+|++|.|+.+.+..|..+++|+.|++++|++.|+|.+.|+..|..
T Consensus 76 ~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~ 152 (193)
T 2wfh_A 76 NMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVK 152 (193)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHH
T ss_pred CCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHH
Confidence 99999999999999999988899999999999999999999888889999999999999999999999999987764
No 120
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.68 E-value=7.9e-17 Score=150.63 Aligned_cols=154 Identities=18% Similarity=0.248 Sum_probs=123.3
Q ss_pred ccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEe
Q 007693 303 LEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDI 382 (593)
Q Consensus 303 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L 382 (593)
.+.++.+++.++.... ..+++|++|++++|.+++..+..+ +.+++|++|++++|.++...+..|..+++|++|+|
T Consensus 21 ~~~v~c~~~~l~~ip~----~~~~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPA----GIPTNAQILYLHDNQITKLEPGVF-DSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp TTEEECTTSCCSSCCS----CCCTTCSEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEeEccCCCcCccCC----CCCCCCCEEEcCCCccCccCHHHh-hCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 4456666666654321 122678888888888887766555 56888999999999888777677788999999999
Q ss_pred eCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhcCCCCc
Q 007693 383 SNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLT 462 (593)
Q Consensus 383 s~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 462 (593)
++|++++..+. .|..+++|++|+|++|.++. +|..+..+++|++|+|++|+++++.+..|..+++|+
T Consensus 96 s~N~l~~l~~~------------~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 162 (229)
T 3e6j_A 96 GTNQLTVLPSA------------VFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLT 162 (229)
T ss_dssp CSSCCCCCCTT------------TTTTCTTCCEEECCSSCCCS-CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCcCCccChh------------HhCcchhhCeEeccCCcccc-cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCC
Confidence 99999887766 57889999999999999985 677888999999999999999988777888999999
Q ss_pred EEEecCcccCcc
Q 007693 463 NLSIRDAVLTNS 474 (593)
Q Consensus 463 ~L~L~~n~l~~~ 474 (593)
.|++++|.+...
T Consensus 163 ~L~l~~N~~~c~ 174 (229)
T 3e6j_A 163 HAYLFGNPWDCE 174 (229)
T ss_dssp EEECTTSCBCTT
T ss_pred EEEeeCCCccCC
Confidence 999999988753
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=1.3e-18 Score=184.12 Aligned_cols=122 Identities=17% Similarity=0.229 Sum_probs=94.7
Q ss_pred CCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccc
Q 007693 352 NLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPL 431 (593)
Q Consensus 352 ~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 431 (593)
.|+.|++++|.+++. |. ++.+++|+.|+|++|.++.. |. .++.+++|+.|+|++|.+++ +| .+
T Consensus 442 ~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~~l-p~------------~~~~l~~L~~L~Ls~N~l~~-lp-~l 504 (567)
T 1dce_A 442 DVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLRAL-PP------------ALAALRCLEVLQASDNALEN-VD-GV 504 (567)
T ss_dssp TCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCCCC-CG------------GGGGCTTCCEEECCSSCCCC-CG-GG
T ss_pred CceEEEecCCCCCCC-cC-ccccccCcEeecCccccccc-ch------------hhhcCCCCCEEECCCCCCCC-Cc-cc
Confidence 577888888887764 33 77888888888888888744 44 48888888888888888887 45 78
Q ss_pred cCCCCCcEEecCCCCCCchh-HHhhhcCCCCcEEEecCcccCcccccC---ccCCCCCceEec
Q 007693 432 STFKELIHLSLRNASLTDVS-LHQLSSLSKLTNLSIRDAVLTNSGLGS---FKPPRSLKLLDL 490 (593)
Q Consensus 432 ~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~---~~~~~~L~~L~l 490 (593)
+.+++|+.|+|++|++++.. |..+..+++|+.|+|++|++++.++.. +..+++|+.|++
T Consensus 505 ~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 505 ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp TTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 88888888888888888876 778888888999999988888865432 223688888864
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=5.1e-18 Score=179.63 Aligned_cols=104 Identities=20% Similarity=0.320 Sum_probs=77.3
Q ss_pred CCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhh
Q 007693 376 SLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQL 455 (593)
Q Consensus 376 ~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 455 (593)
.|+.|++++|.+++. |. +..+++|+.|+|++|.++. +|..++.+++|+.|+|++|+++++ | .+
T Consensus 442 ~L~~L~Ls~n~l~~l-p~-------------~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~Ls~N~l~~l-p-~l 504 (567)
T 1dce_A 442 DVRVLHLAHKDLTVL-CH-------------LEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV-D-GV 504 (567)
T ss_dssp TCSEEECTTSCCSSC-CC-------------GGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCCC-G-GG
T ss_pred CceEEEecCCCCCCC-cC-------------ccccccCcEeecCcccccc-cchhhhcCCCCCEEECCCCCCCCC-c-cc
Confidence 577788888777763 22 6677777888888887774 566777777888888888877773 4 67
Q ss_pred hcCCCCcEEEecCcccCccc-ccCccCCCCCceEecCCCccC
Q 007693 456 SSLSKLTNLSIRDAVLTNSG-LGSFKPPRSLKLLDLHGGWLL 496 (593)
Q Consensus 456 ~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L~l~~n~~~ 496 (593)
..+++|+.|+|++|+|++.. |..+..+++|+.|++++|++.
T Consensus 505 ~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 505 ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp TTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred CCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence 77778888888888877776 677777777888888888773
No 123
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.64 E-value=5.5e-16 Score=138.77 Aligned_cols=141 Identities=16% Similarity=0.180 Sum_probs=118.8
Q ss_pred CcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCcccccc
Q 007693 353 LEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLS 432 (593)
Q Consensus 353 L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 432 (593)
.+.++++++.++..+. ...++|++|++++|++.+..+. .+..+++|++|++++|.+++..+..+.
T Consensus 9 ~~~l~~~~~~l~~~p~---~~~~~l~~L~l~~n~l~~~~~~------------~~~~l~~L~~L~l~~n~l~~~~~~~~~ 73 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT---GIPSSATRLELESNKLQSLPHG------------VFDKLTQLTKLSLSQNQIQSLPDGVFD 73 (177)
T ss_dssp TTEEECCSSCCSSCCT---TCCTTCSEEECCSSCCCCCCTT------------TTTTCTTCSEEECCSSCCCCCCTTTTT
T ss_pred CCEEEecCCCCccCCC---CCCCCCcEEEeCCCcccEeCHH------------HhcCcccccEEECCCCcceEeChhHcc
Confidence 5677777777765432 2347899999999998877666 578899999999999999987777789
Q ss_pred CCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcccccCccCCCCCceEecCCCccCCHHH-HHHHHhhC
Q 007693 433 TFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDA-ILQFCKMH 508 (593)
Q Consensus 433 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~ 508 (593)
.+++|++|++++|++++..+..+..+++|++|++++|.++++.+..+..+++|+.|++++|++.+++. +.++..++
T Consensus 74 ~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~ 150 (177)
T 2o6r_A 74 KLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 150 (177)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHH
T ss_pred CCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCccHHHHHHHH
Confidence 99999999999999999888788999999999999999999888778889999999999999998876 66655544
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=3.2e-16 Score=139.03 Aligned_cols=133 Identities=29% Similarity=0.355 Sum_probs=64.1
Q ss_pred CCCcEEEcCCCCCC-CchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhH
Q 007693 326 ANLRNLNLSNTRFS-SAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSL 404 (593)
Q Consensus 326 ~~L~~L~l~~n~l~-~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~ 404 (593)
++|++|++++|.++ +..+.. +..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.++.
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~----------- 89 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDM----------- 89 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCH-----------
T ss_pred ccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHH-----------
Confidence 45555555555554 111111 13345555555555555543 3344555555555555555543333
Q ss_pred HhhccCCccCEEecCCCCcCCCc-cccccCCCCCcEEecCCCCCCchhH---HhhhcCCCCcEEEecCcccCc
Q 007693 405 TALQNLNHLERLNLEQTQVSDAT-LFPLSTFKELIHLSLRNASLTDVSL---HQLSSLSKLTNLSIRDAVLTN 473 (593)
Q Consensus 405 ~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~L~~n~l~~ 473 (593)
.+..+++|++|++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+..
T Consensus 90 -~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 90 -LAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp -HHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred -HHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 3444555555555555555421 1344455555555555555544333 344455555555555555443
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=3.2e-16 Score=136.00 Aligned_cols=127 Identities=23% Similarity=0.328 Sum_probs=77.1
Q ss_pred CCCcEEEccCCCCC-hHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccc
Q 007693 351 PNLEILSLSGTQID-DYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLF 429 (593)
Q Consensus 351 ~~L~~L~l~~n~i~-~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 429 (593)
++|++|++++|.++ +..+..+..+++|++|++++|.+.+. . .+..+++|++|++++|.+++.+|.
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~------------~~~~l~~L~~L~Ls~n~i~~~~~~ 82 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--A------------NLPKLNKLKKLELSDNRVSGGLEV 82 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--T------------TCCCCTTCCEEECCSSCCCSCTHH
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--h------------hhhcCCCCCEEECCCCcccchHHH
Confidence 45666666666555 33334445566666666666666554 2 356666666666666666665555
Q ss_pred cccCCCCCcEEecCCCCCCch-hHHhhhcCCCCcEEEecCcccCcccc---cCccCCCCCceEecC
Q 007693 430 PLSTFKELIHLSLRNASLTDV-SLHQLSSLSKLTNLSIRDAVLTNSGL---GSFKPPRSLKLLDLH 491 (593)
Q Consensus 430 ~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~~~~~~L~~L~l~ 491 (593)
.+..+++|++|++++|++++. .+..+..+++|+.|++++|.+++..+ ..+..+++|+.|+++
T Consensus 83 ~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 83 LAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred HhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 555566666666666666664 23556666667777777776666544 345556666666665
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.59 E-value=9.7e-16 Score=135.90 Aligned_cols=133 Identities=21% Similarity=0.246 Sum_probs=109.2
Q ss_pred CCCCCcEEEccCCCCC-hHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCc
Q 007693 349 HLPNLEILSLSGTQID-DYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT 427 (593)
Q Consensus 349 ~~~~L~~L~l~~n~i~-~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 427 (593)
..++|++|++++|.++ +..+..+..+++|++|++++|.+.+. . .+..+++|++|++++|.+++.+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~------------~~~~l~~L~~L~Ls~N~l~~~~ 87 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--S------------NLPKLPKLKKLELSENRIFGGL 87 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--S------------SCCCCSSCCEEEEESCCCCSCC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--h------------hhccCCCCCEEECcCCcCchHH
Confidence 3567999999999887 44555567888999999999988876 3 4788899999999999998877
Q ss_pred cccccCCCCCcEEecCCCCCCchhH-HhhhcCCCCcEEEecCcccCcccc---cCccCCCCCceEecCCCcc
Q 007693 428 LFPLSTFKELIHLSLRNASLTDVSL-HQLSSLSKLTNLSIRDAVLTNSGL---GSFKPPRSLKLLDLHGGWL 495 (593)
Q Consensus 428 ~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~---~~~~~~~~L~~L~l~~n~~ 495 (593)
+..+..+++|++|++++|++++... ..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+
T Consensus 88 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 88 DMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred HHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 7777778999999999999888532 678888999999999999988765 4677789999999999876
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.59 E-value=2.6e-15 Score=136.08 Aligned_cols=129 Identities=13% Similarity=0.237 Sum_probs=87.7
Q ss_pred cEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHH-HhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhh
Q 007693 329 RNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAIS-YMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTAL 407 (593)
Q Consensus 329 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~-~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~ 407 (593)
++++++++.++..+. .-.+++++|++++|.+++..+. .+..+++|++|++++|++++..+. .|
T Consensus 11 ~~l~~s~~~l~~ip~----~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~------------~~ 74 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPR----DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN------------AF 74 (192)
T ss_dssp TEEECTTSCCSSCCS----CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTT------------TT
T ss_pred CEEEcCCCCcCcCcc----CCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHh------------Hc
Confidence 556666666655433 1123667777777766655443 366677777777777777776665 57
Q ss_pred ccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCc
Q 007693 408 QNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 473 (593)
Q Consensus 408 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 473 (593)
..+++|++|+|++|++++..+..|..+++|++|+|++|++++..|..|..+++|+.|++++|.++.
T Consensus 75 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 75 EGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp TTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 777777777777777777666667777777777777777777767777777777777777777764
No 128
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.58 E-value=1.8e-15 Score=151.68 Aligned_cols=187 Identities=17% Similarity=0.178 Sum_probs=107.8
Q ss_pred CCccEEEccCCCCChhHHHHHHhc----cCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhh----
Q 007693 301 KALEHLDLSSSMIGDDSVEMVACV----GANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMS---- 372 (593)
Q Consensus 301 ~~L~~L~L~~n~l~~~~~~~~~~~----~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~---- 372 (593)
+.|++|++++|.+++.....+... +++|++|++++|.+++.+...+...+++|++|++++|.+++.....++
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 456666666666665544444332 135666666666666555555544455666666666666655544442
Q ss_pred -cCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCc----cccccCCCCCcEEecCCCCC
Q 007693 373 -MMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT----LFPLSTFKELIHLSLRNASL 447 (593)
Q Consensus 373 -~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l 447 (593)
..++|++|+|++|.+++.... .-...+..+++|++|+|++|.+++.. ...+...++|+.|+|++|.|
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~--------~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i 223 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVA--------VLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA 223 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHH--------HHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred hcCCccceeeCCCCCCChHHHH--------HHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC
Confidence 346677777777766432111 00113456667777777777766532 33455667788888888887
Q ss_pred CchhH----HhhhcCCCCcEEEecCcccCcccccCccCC---C--CCceEe--cCCCcc
Q 007693 448 TDVSL----HQLSSLSKLTNLSIRDAVLTNSGLGSFKPP---R--SLKLLD--LHGGWL 495 (593)
Q Consensus 448 ~~~~~----~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~---~--~L~~L~--l~~n~~ 495 (593)
++... ..+...++|++|+|++|.|++.+...+... . .|+.+. +.+|.+
T Consensus 224 ~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~ 282 (372)
T 3un9_A 224 GDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV 282 (372)
T ss_dssp CHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----C
T ss_pred CHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCcc
Confidence 76443 334456788888888888877665555433 1 266776 667765
No 129
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.58 E-value=5.7e-15 Score=150.16 Aligned_cols=334 Identities=15% Similarity=0.192 Sum_probs=167.9
Q ss_pred cCchHHHhhhCCCCCcEEecCCCCCCChhhHHhhcCCCCCcEEEccCCCCChhHHHHhcCCCCCCEEEcCCCCCChhhHH
Q 007693 103 VTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLR 182 (593)
Q Consensus 103 i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 182 (593)
++.....+|.+|.+|+.+.+..+ ++..+..+|.+|++|+.+++..+ ++.++..+|..+++|+.+.+..+ +......
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~--i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~ 134 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST--VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVE 134 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC--ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecce
Confidence 34444556777777777777643 55555566667777777777543 44444455666666666555432 3333334
Q ss_pred HhhcCCCCCEEEccCCccCccchHhhcCCCCCCeeeccccCCcCCCCCCCCcEEEcCCCcccchhcccC-CCCCcceEec
Q 007693 183 SLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNE-NKAPLAKISL 261 (593)
Q Consensus 183 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~l~~n~l~~l~~~~~-~~~~L~~L~l 261 (593)
+|.++..++...... +......+|..++ +|+.+.+..+ +..++...+ .+.+|+.+.+
T Consensus 135 aF~~~~~~~~~~~~~--~~~i~~~aF~~c~-------------------~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l 192 (394)
T 4fs7_A 135 AFKGCDFKEITIPEG--VTVIGDEAFATCE-------------------SLEYVSLPDS-METLHNGLFSGCGKLKSIKL 192 (394)
T ss_dssp TTTTCCCSEEECCTT--CCEECTTTTTTCT-------------------TCCEEECCTT-CCEECTTTTTTCTTCCBCCC
T ss_pred eeecccccccccCcc--ccccchhhhcccC-------------------CCcEEecCCc-cceeccccccCCCCceEEEc
Confidence 444443322222111 1222233444444 4444444322 223333333 4555555555
Q ss_pred cCccccchhhHHhhhcCCCccEEeccCCCcchhhhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCc
Q 007693 262 AGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSA 341 (593)
Q Consensus 262 ~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 341 (593)
..+ +..+.. ..+.++..|+.+.+..+.............|+.+.+... ++......+... ..++.+.+..+.. ..
T Consensus 193 ~~~-~~~I~~-~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~-~~l~~~~~~~~~~-~i 267 (394)
T 4fs7_A 193 PRN-LKIIRD-YCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDS-FTELGKSVFYGC-TDLESISIQNNKL-RI 267 (394)
T ss_dssp CTT-CCEECT-TTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTT-CCEECSSTTTTC-SSCCEEEECCTTC-EE
T ss_pred CCC-ceEeCc-hhhccccccceeecCCCceEeehhhcccCCCceEEECCC-ceeccccccccc-ccceeEEcCCCcc-ee
Confidence 443 222221 234455555555554443222222333445555555432 121111222222 5566665554421 11
Q ss_pred hHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCC
Q 007693 342 GVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQT 421 (593)
Q Consensus 342 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n 421 (593)
....+ ..++.++.+....+.+.+ ..|..+.+|+.+.+..+ +...... +|.+|.+|+.+++..+
T Consensus 268 ~~~~F-~~~~~l~~~~~~~~~i~~---~~F~~~~~L~~i~l~~~-i~~I~~~------------aF~~c~~L~~i~lp~~ 330 (394)
T 4fs7_A 268 GGSLF-YNCSGLKKVIYGSVIVPE---KTFYGCSSLTEVKLLDS-VKFIGEE------------AFESCTSLVSIDLPYL 330 (394)
T ss_dssp CSCTT-TTCTTCCEEEECSSEECT---TTTTTCTTCCEEEECTT-CCEECTT------------TTTTCTTCCEECCCTT
T ss_pred ecccc-ccccccceeccCceeecc---ccccccccccccccccc-cceechh------------hhcCCCCCCEEEeCCc
Confidence 12222 345666666665544332 24556667777776543 3333333 5677777777777543
Q ss_pred CcCCCccccccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcccccCccCCCCCceE
Q 007693 422 QVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLL 488 (593)
Q Consensus 422 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 488 (593)
++.+...+|.+|.+|+.+++..+ ++.+...+|.+|++|+.+++..+ ++.. ..+|.+|++|+.+
T Consensus 331 -v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~~-~~~F~~c~~L~~I 393 (394)
T 4fs7_A 331 -VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQY-RYDFEDTTKFKWI 393 (394)
T ss_dssp -CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGGG-GGGBCTTCEEEEE
T ss_pred -ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEEh-hheecCCCCCcEE
Confidence 55555566777777777777655 66666666777777777777654 2222 2456666666654
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=1.1e-14 Score=130.27 Aligned_cols=132 Identities=14% Similarity=0.206 Sum_probs=103.0
Q ss_pred CCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHh
Q 007693 327 NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTA 406 (593)
Q Consensus 327 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~ 406 (593)
+.+.++++++.++..+. ...++|++|++++|.+++..+..+..+++|++|++++|.+.+..+. .
T Consensus 8 ~~~~l~~~~~~l~~~p~----~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------~ 71 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPT----GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDG------------V 71 (177)
T ss_dssp ETTEEECCSSCCSSCCT----TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT------------T
T ss_pred CCCEEEecCCCCccCCC----CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChh------------H
Confidence 35667777777776553 2346788888888888776666677888888888888888876665 5
Q ss_pred hccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcc
Q 007693 407 LQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS 474 (593)
Q Consensus 407 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 474 (593)
+..+++|++|++++|.+++..+..+..+++|++|++++|+++++.+..+..+++|+.|++++|++++.
T Consensus 72 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 72 FDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 77888888888888888887766778888888888888888887776678888888888888888764
No 131
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.56 E-value=1.9e-15 Score=151.50 Aligned_cols=189 Identities=16% Similarity=0.158 Sum_probs=137.2
Q ss_pred cCCCccEEeccCCCcchh--h----hcc-cCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHH--
Q 007693 277 ETSLLSFLDVSNSSLSRF--C----FLT-QMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILA-- 347 (593)
Q Consensus 277 ~~~~L~~L~ls~n~l~~~--~----~l~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-- 347 (593)
-.+.|+.|++++|.++.. . .+. ..++|++|+|++|.+++.....+...+++|++|++++|.+++.+...+.
T Consensus 70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 346788888888887754 2 222 2368999999999998877777665557899999999999887776654
Q ss_pred --cCCCCCcEEEccCCCCChHHHHH----hhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCC
Q 007693 348 --GHLPNLEILSLSGTQIDDYAISY----MSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQT 421 (593)
Q Consensus 348 --~~~~~L~~L~l~~n~i~~~~~~~----l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n 421 (593)
...++|++|++++|.+++..... +...++|++|+|++|.+.+.... .-...+...++|++|+|++|
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~--------~L~~~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLE--------LLAAQLDRNRQLQELNVAYN 221 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHH--------HHHHHGGGCSCCCEEECCSS
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHH--------HHHHHHhcCCCcCeEECCCC
Confidence 24678999999999998755444 46789999999999998653211 11125677889999999999
Q ss_pred CcCCCcc----ccccCCCCCcEEecCCCCCCchhHHhhhcCCC-----CcEEE--ecCcccCc
Q 007693 422 QVSDATL----FPLSTFKELIHLSLRNASLTDVSLHQLSSLSK-----LTNLS--IRDAVLTN 473 (593)
Q Consensus 422 ~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-----L~~L~--L~~n~l~~ 473 (593)
.+++... ..+...++|++|+|++|.|++.....+..+.. |+.+. +..|.++.
T Consensus 222 ~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~ 284 (372)
T 3un9_A 222 GAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSE 284 (372)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHH
T ss_pred CCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCH
Confidence 9987433 33456789999999999999887777755422 66666 66666654
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.56 E-value=2.5e-15 Score=130.27 Aligned_cols=128 Identities=24% Similarity=0.371 Sum_probs=98.8
Q ss_pred CCCcEEEcCCCCCC-CchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhH
Q 007693 326 ANLRNLNLSNTRFS-SAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSL 404 (593)
Q Consensus 326 ~~L~~L~l~~n~l~-~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~ 404 (593)
+++++|++++|.++ +..+.. ++.+++|++|++++|.+++. ..++.+++|++|++++|.+.+.++.
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~----------- 82 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEV----------- 82 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHH-----------
T ss_pred ccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHH-----------
Confidence 56777888777776 233322 25678888888888888776 5677888888888888888876555
Q ss_pred HhhccCCccCEEecCCCCcCCC-ccccccCCCCCcEEecCCCCCCchhH---HhhhcCCCCcEEEecC
Q 007693 405 TALQNLNHLERLNLEQTQVSDA-TLFPLSTFKELIHLSLRNASLTDVSL---HQLSSLSKLTNLSIRD 468 (593)
Q Consensus 405 ~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~L~~ 468 (593)
.+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|++++
T Consensus 83 -~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 83 -LAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp -HHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred -HhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 567788889999998888874 34678888899999999998888665 5788889999988764
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.55 E-value=1.4e-14 Score=131.18 Aligned_cols=128 Identities=24% Similarity=0.251 Sum_probs=109.0
Q ss_pred cEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhc
Q 007693 329 RNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQ 408 (593)
Q Consensus 329 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~ 408 (593)
+.++++++.++..+. +-.++|++|++++|.++... ..|..+++|+.|++++|.+++..+. .|.
T Consensus 13 ~~l~~~~~~l~~ip~----~~~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~------------~f~ 75 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPK----GIPRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQ------------SFS 75 (193)
T ss_dssp TEEECTTSCCSSCCS----CCCTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTT------------TTT
T ss_pred CEEEcCCCCCCcCCC----CCCCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHh------------Hcc
Confidence 567788887776653 22457899999999888543 6788899999999999999988776 689
Q ss_pred cCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCc
Q 007693 409 NLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 473 (593)
Q Consensus 409 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 473 (593)
++++|++|+|++|.+++..+..|..+++|++|+|++|+++.+.+..|..+++|+.|++++|++..
T Consensus 76 ~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 76 NMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 99999999999999999888889999999999999999999887788999999999999998864
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.55 E-value=3.5e-15 Score=133.31 Aligned_cols=131 Identities=22% Similarity=0.240 Sum_probs=98.5
Q ss_pred CCCCCcEEEccCCCCChHHHHHhhc-CCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCc
Q 007693 349 HLPNLEILSLSGTQIDDYAISYMSM-MPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT 427 (593)
Q Consensus 349 ~~~~L~~L~l~~n~i~~~~~~~l~~-~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 427 (593)
.+++|++|++++|.++.. +. +.. .++|+.|++++|.+.+. + .+..+++|++|++++|.+++..
T Consensus 17 ~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~-~-------------~l~~l~~L~~L~Ls~N~l~~~~ 80 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL-D-------------GFPLLRRLKTLLVNNNRICRIG 80 (176)
T ss_dssp CTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE-C-------------CCCCCSSCCEEECCSSCCCEEC
T ss_pred CcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc-c-------------ccccCCCCCEEECCCCcccccC
Confidence 456778888888877754 22 333 34888888888888765 2 3778888888888888888755
Q ss_pred cccccCCCCCcEEecCCCCCCchhH-HhhhcCCCCcEEEecCcccCccccc---CccCCCCCceEecCCCcc
Q 007693 428 LFPLSTFKELIHLSLRNASLTDVSL-HQLSSLSKLTNLSIRDAVLTNSGLG---SFKPPRSLKLLDLHGGWL 495 (593)
Q Consensus 428 ~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~---~~~~~~~L~~L~l~~n~~ 495 (593)
+..+..+++|++|++++|+++...+ ..+..+++|+.|++++|+++..... .+..+++|+.||+++|..
T Consensus 81 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 81 EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp SCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred cchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 4555788888888888888877443 3678888899999999988865332 367788999999998886
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.54 E-value=3.5e-14 Score=143.60 Aligned_cols=263 Identities=10% Similarity=0.144 Sum_probs=166.4
Q ss_pred CCCCCEEEccCCccCccchHhhcCCCCCCeeeccccCCcCCCCCCCCcEEEcCCCcccchhcccCCCCCcceEeccCccc
Q 007693 187 LTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTF 266 (593)
Q Consensus 187 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~~ 266 (593)
+..++.+.+.+ .++.....+|..+ +|+.+.+..+ ++.+....+...+|+++.+.+ .+
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~--------------------i~~I~~~aF~~~~L~~i~lp~-~l 168 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG--------------------LKSIGDMAFFNSTVQEIVFPS-TL 168 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT--------------------CCEECTTTTTTCCCCEEECCT-TC
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC--------------------ccEECHHhcCCCCceEEEeCC-Cc
Confidence 35566666543 2444444555543 4555554433 334444433223455555543 23
Q ss_pred cchhhHHhhhcCCCccEEeccCCCcchh--hhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHH
Q 007693 267 INEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVG 344 (593)
Q Consensus 267 ~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 344 (593)
..+... .|.+|++|+.+++++|.++.+ ..+. +.+|+.+.+..+ ++......+..+ ++|+.+.+..+ ++..+..
T Consensus 169 ~~I~~~-aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~-~~L~~l~l~~~-l~~I~~~ 243 (401)
T 4fdw_A 169 EQLKED-IFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKT-SQLKTIEIPEN-VSTIGQE 243 (401)
T ss_dssp CEECSS-TTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTC-TTCCCEECCTT-CCEECTT
T ss_pred cEehHH-HhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCC-CCCCEEecCCC-ccCcccc
Confidence 322221 244555555555555555544 2232 456666666533 444444444443 66666666653 4444444
Q ss_pred HHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccC-----ccccccccchhhhhhHHhhccCCccCEEecC
Q 007693 345 ILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIK-----GFIQQVGAETDLVLSLTALQNLNHLERLNLE 419 (593)
Q Consensus 345 ~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~-----~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 419 (593)
+|. + .+|+.+.+. +.++.+...+|.+|++|+.+++.+|.+. ..... +|.+|++|+.+++.
T Consensus 244 aF~-~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~------------aF~~c~~L~~l~l~ 308 (401)
T 4fdw_A 244 AFR-E-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPY------------CLEGCPKLARFEIP 308 (401)
T ss_dssp TTT-T-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTT------------TTTTCTTCCEECCC
T ss_pred ccc-c-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHH------------HhhCCccCCeEEeC
Confidence 442 2 578888884 4466666677888888888888887664 23333 68999999999998
Q ss_pred CCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcccccCccCC-CCCceEecCCCcc
Q 007693 420 QTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPP-RSLKLLDLHGGWL 495 (593)
Q Consensus 420 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~L~~L~l~~n~~ 495 (593)
+ .++.+...+|.+|++|+.+.|..+ ++.+...+|.++ +|+.+++++|.+.......|..+ ..++.|.+..+.+
T Consensus 309 ~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 309 E-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp T-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred C-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 4 577777788999999999999554 788778889999 99999999999888888888887 4788999888764
No 136
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.52 E-value=1.4e-14 Score=147.24 Aligned_cols=325 Identities=13% Similarity=0.127 Sum_probs=204.3
Q ss_pred HHHHhcCCCccEEEcCCCCccCchHHHhhhCCCCCcEEecCCCCCCChhhHHhhcCCCCCcEEEccCCCCChhHHHHhcC
Q 007693 83 MAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSS 162 (593)
Q Consensus 83 ~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~ 162 (593)
..+|.+|.+|+++.+.. . ++.....+|.+|++|+.+++..+ ++..+...|.++..|+.+.+..+ +...+..+|..
T Consensus 64 ~~AF~~c~~L~~i~lp~-~-i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~ 138 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPS-T-VREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKG 138 (394)
T ss_dssp TTTTTTCTTEEEEECCT-T-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred HHHhhCCCCceEEEeCC-C-ccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc-eeeecceeeec
Confidence 34688999999999975 3 77777788999999999999875 56666778889999998877644 45555566777
Q ss_pred CCCCCEEEcCCCCCChhhHHHhhcCCCCCEEEccCCccCccchHhhcCCCCCCeeeccccCCcC-----CCCCCCCcEEE
Q 007693 163 LQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTK-----LPNISSLECLN 237 (593)
Q Consensus 163 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-----l~~l~~L~~L~ 237 (593)
+..++...... +......+|.++++|+.+.+..+ +......+|..+++|+.+.+..+ ++. +.++..|+.+.
T Consensus 139 ~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~ 214 (394)
T 4fs7_A 139 CDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENME 214 (394)
T ss_dssp CCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCC
T ss_pred ccccccccCcc--ccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceee
Confidence 75544433333 23334567899999999999765 34466678888888888887654 221 23445555554
Q ss_pred cCCCcccchhcccCCCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcchhhhcccCCCccEEEccCCCCChhH
Q 007693 238 LSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDS 317 (593)
Q Consensus 238 l~~n~l~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~L~~n~l~~~~ 317 (593)
+..+. ..+....+...+|+.+.+.... ..+. ...+..+..++.+.+..+... ..
T Consensus 215 ~~~~~-~~i~~~~~~~~~l~~i~ip~~~-~~i~-----------------------~~~f~~~~~l~~~~~~~~~~~-i~ 268 (394)
T 4fs7_A 215 FPNSL-YYLGDFALSKTGVKNIIIPDSF-TELG-----------------------KSVFYGCTDLESISIQNNKLR-IG 268 (394)
T ss_dssp CCTTC-CEECTTTTTTCCCCEEEECTTC-CEEC-----------------------SSTTTTCSSCCEEEECCTTCE-EC
T ss_pred cCCCc-eEeehhhcccCCCceEEECCCc-eecc-----------------------cccccccccceeEEcCCCcce-ee
Confidence 43322 1222223333444444443211 1111 134445555666555543221 12
Q ss_pred HHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccc
Q 007693 318 VEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAE 397 (593)
Q Consensus 318 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~ 397 (593)
...+... ..++.+......+... . +..+.+|+.+.+..+ ++.+...+|.++.+|+.++|..+ +......
T Consensus 269 ~~~F~~~-~~l~~~~~~~~~i~~~---~-F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~---- 337 (394)
T 4fs7_A 269 GSLFYNC-SGLKKVIYGSVIVPEK---T-FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKR---- 337 (394)
T ss_dssp SCTTTTC-TTCCEEEECSSEECTT---T-TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTT----
T ss_pred ccccccc-cccceeccCceeeccc---c-ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHH----
Confidence 2222222 5566665554433322 1 245778888887654 55555567788888888888643 5444444
Q ss_pred hhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEE
Q 007693 398 TDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNL 464 (593)
Q Consensus 398 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 464 (593)
+|.+|.+|+.+++..+ ++.+...+|.+|++|+.+++..+ ++.. ..+|.++++|+.+
T Consensus 338 --------aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~~-~~~F~~c~~L~~I 393 (394)
T 4fs7_A 338 --------SFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQY-RYDFEDTTKFKWI 393 (394)
T ss_dssp --------TTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGGG-GGGBCTTCEEEEE
T ss_pred --------hccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEEh-hheecCCCCCcEE
Confidence 6888888998888776 66666778888999999888654 3332 3467788887764
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.52 E-value=2.4e-14 Score=126.81 Aligned_cols=118 Identities=22% Similarity=0.210 Sum_probs=102.8
Q ss_pred CCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhh
Q 007693 376 SLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQL 455 (593)
Q Consensus 376 ~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 455 (593)
..+.+++++|.+...+.. + .++|++|+|++|.+++..+..|..+++|++|+|++|+|+++.+..|
T Consensus 10 ~~~~l~~s~n~l~~ip~~-------------~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f 74 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTG-------------I--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVF 74 (170)
T ss_dssp ETTEEECTTSCCSSCCSC-------------C--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT
T ss_pred CCCEEEeCCCCcCccCcc-------------C--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhc
Confidence 357889999988876544 2 3789999999999999888889999999999999999999888888
Q ss_pred hcCCCCcEEEecCcccCcccccCccCCCCCceEecCCCccCCHHH-HHHHHhhC
Q 007693 456 SSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDA-ILQFCKMH 508 (593)
Q Consensus 456 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~ 508 (593)
..+++|++|+|++|+|+++.+..|..+++|+.|+|++|++.|++. +.++..|+
T Consensus 75 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l 128 (170)
T 3g39_A 75 DKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWI 128 (170)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGGHHHHHHH
T ss_pred cCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhHHHHHHHH
Confidence 999999999999999999988889999999999999999999884 66665544
No 138
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.50 E-value=4.6e-15 Score=162.00 Aligned_cols=173 Identities=9% Similarity=0.059 Sum_probs=86.2
Q ss_pred hhcCCCCCCeeeccccCCcCCC----CCCCCcEEEcCCCcccchhcccCCCCCcceEeccCccccchhhHHhhhcCCCcc
Q 007693 207 VLKMFPRLSFLNLAWTGVTKLP----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLS 282 (593)
Q Consensus 207 ~l~~l~~L~~L~l~~n~l~~l~----~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 282 (593)
.+..++.|+.|+|++|.+..++ .+++|++|+|++|.++.+|..+..+++|+.|+|++|.+..+|..+ .++++|+
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~--~~l~~L~ 296 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAEL--GSCFQLK 296 (727)
T ss_dssp ---CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSG--GGGTTCS
T ss_pred hhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhh--cCCCCCC
Confidence 3444444444444444444332 345566666666666666666666677777777777766665543 3667777
Q ss_pred EEeccCCCcchh-hhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCC
Q 007693 283 FLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGT 361 (593)
Q Consensus 283 ~L~ls~n~l~~~-~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n 361 (593)
+|+|++|.++.+ ..+..+++|++|+|++|.+++..+..+.........+++++|.+++..+ ..|+.|+++.|
T Consensus 297 ~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p-------~~l~~l~l~~n 369 (727)
T 4b8c_D 297 YFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP-------HERRFIEINTD 369 (727)
T ss_dssp EEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC-------CC---------
T ss_pred EEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc-------cccceeEeecc
Confidence 777777777766 4577888888888888888887777665432223346677787775432 35677777766
Q ss_pred --------CCChHHHHHhhcCCCCCEEEeeCCccC
Q 007693 362 --------QIDDYAISYMSMMPSLKFIDISNTDIK 388 (593)
Q Consensus 362 --------~i~~~~~~~l~~~~~L~~L~Ls~n~i~ 388 (593)
.+.+..+..+..+..+....+++|.+.
T Consensus 370 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 370 GEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp --------------------------------CCC
T ss_pred cccccccCCccccccchhhcccccceeeeeccccc
Confidence 233333333445566666777777664
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.50 E-value=1.4e-14 Score=129.32 Aligned_cols=131 Identities=18% Similarity=0.238 Sum_probs=87.8
Q ss_pred CCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHH
Q 007693 326 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLT 405 (593)
Q Consensus 326 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~ 405 (593)
++|++|++++|.++... .+....++|++|++++|.+++. ..+..+++|++|++++|.+++.++.
T Consensus 19 ~~L~~L~l~~n~l~~i~--~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~------------ 82 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIE--NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEG------------ 82 (176)
T ss_dssp TSCEEEECTTSCCCSCC--CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSC------------
T ss_pred CCceEEEeeCCCCchhH--HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcc------------
Confidence 45555555555555431 1222234677777777777664 4566777788888888877766555
Q ss_pred hhccCCccCEEecCCCCcCCCccc--cccCCCCCcEEecCCCCCCchhHH---hhhcCCCCcEEEecCcccCc
Q 007693 406 ALQNLNHLERLNLEQTQVSDATLF--PLSTFKELIHLSLRNASLTDVSLH---QLSSLSKLTNLSIRDAVLTN 473 (593)
Q Consensus 406 ~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~---~l~~l~~L~~L~L~~n~l~~ 473 (593)
.+..+++|++|++++|.+++ ++. .+..+++|+.|++++|.++..... .+..+++|+.||+++|.+.+
T Consensus 83 ~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 83 LDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp HHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred hhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 45777788888888887766 333 677778888888888887764332 47778888888888887665
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.50 E-value=6.2e-14 Score=141.83 Aligned_cols=238 Identities=14% Similarity=0.186 Sum_probs=190.7
Q ss_pred CCCcEEEcCCCcccchhcccCCCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcchh--hhcccCCCccEEEc
Q 007693 231 SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDL 308 (593)
Q Consensus 231 ~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~L 308 (593)
..++.+.+.. .++.++...+...+|+++.+..+ +..+... .|.+ .+|+.+.+.. .+..+ .++..|++|+.+++
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~~L~~i~l~~~-i~~I~~~-aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNSQIAKVVLNEG-LKSIGDM-AFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTCCCSEEECCTT-CCEECTT-TTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECC-ccCEehHhhcccCCccEEEeCCC-ccEECHH-hcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 5566666654 46677777774458999999876 5555543 3445 4799999986 66666 68899999999999
Q ss_pred cCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccC
Q 007693 309 SSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIK 388 (593)
Q Consensus 309 ~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~ 388 (593)
++|.++......+. +.+|+.+.+.++ ++..+..+| .+|++|+.+++..+ ++.+...+|.+ .+|+.+.+. +.+.
T Consensus 188 ~~n~l~~I~~~aF~--~~~L~~l~lp~~-l~~I~~~aF-~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~ 260 (401)
T 4fdw_A 188 SKTKITKLPASTFV--YAGIEEVLLPVT-LKEIGSQAF-LKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVT 260 (401)
T ss_dssp TTSCCSEECTTTTT--TCCCSEEECCTT-CCEECTTTT-TTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCC
T ss_pred CCCcceEechhhEe--ecccCEEEeCCc-hheehhhHh-hCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCcc
Confidence 99998876666665 389999999854 776666666 67999999999875 66666677777 799999995 4565
Q ss_pred ccccccccchhhhhhHHhhccCCccCEEecCCCCcC-----CCccccccCCCCCcEEecCCCCCCchhHHhhhcCCCCcE
Q 007693 389 GFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVS-----DATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTN 463 (593)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 463 (593)
..... +|.+|++|+.+++.+|.+. .+....|..|++|+.+++. +.++.+...+|.+|++|+.
T Consensus 261 ~I~~~------------aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~ 327 (401)
T 4fdw_A 261 NIASR------------AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQ 327 (401)
T ss_dssp EECTT------------TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCE
T ss_pred EEChh------------HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccE
Confidence 55555 7999999999999998765 4566789999999999999 5688888889999999999
Q ss_pred EEecCcccCcccccCccCCCCCceEecCCCcc
Q 007693 464 LSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL 495 (593)
Q Consensus 464 L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~ 495 (593)
+++..| ++.+...+|.++ +|+.+++.+|..
T Consensus 328 l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 328 LTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp EEECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred EEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence 999665 888889999999 999999999976
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.49 E-value=7.6e-14 Score=123.98 Aligned_cols=116 Identities=19% Similarity=0.220 Sum_probs=99.9
Q ss_pred CCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhh
Q 007693 377 LKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLS 456 (593)
Q Consensus 377 L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 456 (593)
-+.+++++|.+...+.. + .++|++|+|++|.+++..+..|..+++|++|+|++|+|+++.+..|.
T Consensus 14 ~~~l~~~~n~l~~iP~~-------------~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~ 78 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAG-------------I--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD 78 (174)
T ss_dssp SSEEECCSSCCSSCCSC-------------C--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CcEEEeCCCCCCccCCC-------------c--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhC
Confidence 37889999988765543 2 27899999999999998888999999999999999999998777789
Q ss_pred cCCCCcEEEecCcccCcccccCccCCCCCceEecCCCccCCHHH-HHHHHhh
Q 007693 457 SLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDA-ILQFCKM 507 (593)
Q Consensus 457 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~ 507 (593)
.+++|+.|+|++|+|+++.+..|..+++|+.|++++|++.|++. +.++..|
T Consensus 79 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~~~ 130 (174)
T 2r9u_A 79 KLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNW 130 (174)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHHHHHH
T ss_pred CcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccccccHHHHHHH
Confidence 99999999999999999887789999999999999999998875 5555444
No 142
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.49 E-value=4.8e-15 Score=161.87 Aligned_cols=137 Identities=15% Similarity=0.189 Sum_probs=66.1
Q ss_pred CCCCCcEEEcCCCcccchhcccCCCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcchhhhcccCCCccEEEc
Q 007693 229 NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDL 308 (593)
Q Consensus 229 ~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~L 308 (593)
.++.|+.|+|++|.+..+|..++.+++|++|+|++|.+..+|.. +..+++|++|+|
T Consensus 222 ~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~------------------------~~~l~~L~~L~L 277 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAE------------------------IKNLSNLRVLDL 277 (727)
T ss_dssp CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGG------------------------GGGGTTCCEEEC
T ss_pred cCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChh------------------------hhCCCCCCEEeC
Confidence 44555555555555555555555555555555555555544433 344444444444
Q ss_pred cCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCC-CCCEEEeeCCcc
Q 007693 309 SSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMP-SLKFIDISNTDI 387 (593)
Q Consensus 309 ~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~-~L~~L~Ls~n~i 387 (593)
++|.++. .+..+..+ ++|++|+|++|.++..+.. + +.+++|++|+|++|.+++..+..+.... .+..+++++|.+
T Consensus 278 s~N~l~~-lp~~~~~l-~~L~~L~L~~N~l~~lp~~-~-~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l 353 (727)
T 4b8c_D 278 SHNRLTS-LPAELGSC-FQLKYFYFFDNMVTTLPWE-F-GNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRP 353 (727)
T ss_dssp TTSCCSS-CCSSGGGG-TTCSEEECCSSCCCCCCSS-T-TSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred cCCcCCc-cChhhcCC-CCCCEEECCCCCCCccChh-h-hcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcc
Confidence 4444442 23333333 4555555555555433222 2 4455555555555555555554443221 111244555555
Q ss_pred Cccccc
Q 007693 388 KGFIQQ 393 (593)
Q Consensus 388 ~~~~~~ 393 (593)
.+.+|.
T Consensus 354 ~~~~p~ 359 (727)
T 4b8c_D 354 EIPLPH 359 (727)
T ss_dssp CCCCCC
T ss_pred cCcCcc
Confidence 544443
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.46 E-value=1.1e-15 Score=139.50 Aligned_cols=150 Identities=21% Similarity=0.208 Sum_probs=100.1
Q ss_pred CCCcEEEcCCCCCCCchHH------HHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchh
Q 007693 326 ANLRNLNLSNTRFSSAGVG------ILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETD 399 (593)
Q Consensus 326 ~~L~~L~l~~n~l~~~~~~------~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 399 (593)
..++.++++.+.+++..+. .+ +.+++|++|++++|.+++. + .+..+++|++|++++|.+...+ .
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~-~~l~~L~~L~ls~n~l~~l-~-~~~~l~~L~~L~l~~n~l~~l~-~------ 87 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATL-STLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIKKIE-N------ 87 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHH-HHTTTCSEEECSEEEESCC-C-CHHHHTTCCEEEEEEEEECSCS-S------
T ss_pred ccccCcchheeEeccccCcHhhhhHHH-hcCCCCCEEECCCCCCccc-c-ccccCCCCCEEECCCCCccccc-c------
Confidence 4454444444444433221 33 4577788888877777763 2 5667778888888888777433 3
Q ss_pred hhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhH-HhhhcCCCCcEEEecCcccCcccccC
Q 007693 400 LVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSL-HQLSSLSKLTNLSIRDAVLTNSGLGS 478 (593)
Q Consensus 400 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~ 478 (593)
.+..+++|++|++++|.+++ ++ .+..+++|++|++++|++++..+ ..+..+++|+.|++++|++++..+..
T Consensus 88 ------~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~ 159 (198)
T 1ds9_A 88 ------LDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN 159 (198)
T ss_dssp ------HHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTT
T ss_pred ------hhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccc
Confidence 35556778888888888776 33 56777788888888888877543 56777888888888888877664432
Q ss_pred ----------ccCCCCCceEecCCCcc
Q 007693 479 ----------FKPPRSLKLLDLHGGWL 495 (593)
Q Consensus 479 ----------~~~~~~L~~L~l~~n~~ 495 (593)
+..+++|+.|| +|++
T Consensus 160 ~~~~~~~~~~~~~l~~L~~Ld--~~~i 184 (198)
T 1ds9_A 160 NATSEYRIEVVKRLPNLKKLD--GMPV 184 (198)
T ss_dssp TTHHHHHHHHHHHCSSCSEEC--CGGG
T ss_pred cchHHHHHHHHHhCCCcEEEC--Cccc
Confidence 56677777776 6665
No 144
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.41 E-value=1.5e-12 Score=132.19 Aligned_cols=331 Identities=11% Similarity=0.151 Sum_probs=171.4
Q ss_pred hHHHhhhCCC-CCcEEecCCCCCCChhhHHhhcCCCCCcEEEccCC---CCChhHHHHhcCCCCCCEEEcCCCCCChhhH
Q 007693 106 SALWALTGMT-CLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSET---GLTADGIALLSSLQNLSVLDLGGLPVTDLVL 181 (593)
Q Consensus 106 ~~~~~l~~l~-~L~~L~L~~~~~l~~~~~~~l~~~~~L~~L~L~~~---~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 181 (593)
....+|.+|+ .|+.+.+... ++..+..+|.+|.+|+.+.+..+ .++.++..+|..+.+|+.+.+..+ +..+..
T Consensus 54 Ig~~aF~~~~~~L~sI~iP~s--vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~ 130 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIPDT--VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDS 130 (394)
T ss_dssp ECTTTTTTCCSCCCEEEECTT--CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECT
T ss_pred cCHhhccCCCCcCEEEEECCC--eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehh
Confidence 3344566664 4777777653 55556666777777777777654 245455555666666666555432 333334
Q ss_pred HHhhcCCCCCEEEccCCccCccchHhhcCCCCCCeeeccccCCcCCCCCCCCcEEEcCCCcccchhcccCCCCCcceEec
Q 007693 182 RSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISL 261 (593)
Q Consensus 182 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l 261 (593)
.+|..+.+|+.+.+..+ +......+|..+..|+ .+.+..+ ++.+....+....|+++.+
T Consensus 131 ~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~-------------------~i~~~~~-~~~I~~~aF~~~~l~~i~i 189 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLH-------------------TVTLPDS-VTAIEERAFTGTALTQIHI 189 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC-------------------EEECCTT-CCEECTTTTTTCCCSEEEE
T ss_pred hhhhhhcccccccccce-eeeecccceecccccc-------------------cccccce-eeEeccccccccceeEEEE
Confidence 45555666666655432 2223333444444444 4444322 3334444444445555555
Q ss_pred cCccccchhhHHhhhcCCCccEEeccCCCcchhh--hcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCC
Q 007693 262 AGTTFINEREAFLYIETSLLSFLDVSNSSLSRFC--FLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFS 339 (593)
Q Consensus 262 ~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~--~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 339 (593)
..+..... ...+..+..+.............. .+........-.... .. ...+..+.+.. .++
T Consensus 190 p~~~~~i~--~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~-~~~~~~~~ip~-~v~ 254 (394)
T 4gt6_A 190 PAKVTRIG--TNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRY-----------PS-QREDPAFKIPN-GVA 254 (394)
T ss_dssp CTTCCEEC--TTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEEC-----------CT-TCCCSEEECCT-TEE
T ss_pred CCcccccc--cchhhhccccceecccccccccccceeeccccccccccccc-----------cc-ccccceEEcCC-cce
Confidence 43321111 112334445554444433322220 000000000000000 00 02333343332 122
Q ss_pred CchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecC
Q 007693 340 SAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLE 419 (593)
Q Consensus 340 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 419 (593)
..+..++ ..|..|+.+.+..+ +......+|.++++|+.+.+. +.+...... +|.+|.+|+.+++.
T Consensus 255 ~i~~~aF-~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~------------aF~~c~~L~~i~lp 319 (394)
T 4gt6_A 255 RIETHAF-DSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPES------------VFAGCISLKSIDIP 319 (394)
T ss_dssp EECTTTT-TTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTT------------TTTTCTTCCEEECC
T ss_pred Eccccee-eecccccEEecccc-cceecCcccccccccccccCC-CcccccCce------------eecCCCCcCEEEeC
Confidence 2222333 46778888887654 233444567778888888885 344444444 68888888888887
Q ss_pred CCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcccccCccCCCCCceEecCCCcc
Q 007693 420 QTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL 495 (593)
Q Consensus 420 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~ 495 (593)
.+ ++.+...+|.+|.+|+.+.+..+ ++.+...+|.+|++|+.+++.++... ...+..+..|+.+.+..+.+
T Consensus 320 ~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 320 EG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred Cc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 64 66656677888888888888643 77777778888888888888887643 24566678888888776654
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.34 E-value=4.3e-14 Score=128.85 Aligned_cols=110 Identities=18% Similarity=0.184 Sum_probs=55.3
Q ss_pred HhhcCCCCCEEEccCCccCccchHhhcCCCCCCeeeccccCCcCCCCCCCCcEEEcCCCcccchhcccCCCCCcceEecc
Q 007693 183 SLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLA 262 (593)
Q Consensus 183 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~ 262 (593)
.+..+++|++|++++|.+++. + .+..+++|+.|++++|.++ .+|..+..+++|++|+++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l-~-~~~~l~~L~~L~l~~n~l~-------------------~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK-------------------KIENLDAVADTLEELWIS 101 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCC-C-CHHHHTTCCEEEEEEEEEC-------------------SCSSHHHHHHHCSEEEEE
T ss_pred HHhcCCCCCEEECCCCCCccc-c-ccccCCCCCEEECCCCCcc-------------------cccchhhcCCcCCEEECc
Confidence 555555666666665555542 2 4444444444444444443 333333334445555555
Q ss_pred CccccchhhHHhhhcCCCccEEeccCCCcchh---hhcccCCCccEEEccCCCCChh
Q 007693 263 GTTFINEREAFLYIETSLLSFLDVSNSSLSRF---CFLTQMKALEHLDLSSSMIGDD 316 (593)
Q Consensus 263 ~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~---~~l~~~~~L~~L~L~~n~l~~~ 316 (593)
+|.+..++. +..+++|++|++++|.++.+ ..+..+++|++|++++|.+++.
T Consensus 102 ~N~l~~l~~---~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 102 YNQIASLSG---IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp EEECCCHHH---HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred CCcCCcCCc---cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 555544431 22445555555555555543 2355566666666666665443
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.33 E-value=1.5e-12 Score=115.24 Aligned_cols=108 Identities=16% Similarity=0.250 Sum_probs=82.7
Q ss_pred CCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccc
Q 007693 352 NLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPL 431 (593)
Q Consensus 352 ~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 431 (593)
..+.+++++|.++..+ ..+ .++|++|+|++|.+++..+. .|..+++|++|+|++|++++..+..|
T Consensus 10 ~~~~l~~s~n~l~~ip-~~~--~~~l~~L~L~~N~i~~~~~~------------~~~~l~~L~~L~Ls~N~l~~l~~~~f 74 (170)
T 3g39_A 10 SGTTVDCSGKSLASVP-TGI--PTTTQVLYLYDNQITKLEPG------------VFDRLTQLTRLDLDNNQLTVLPAGVF 74 (170)
T ss_dssp ETTEEECTTSCCSSCC-SCC--CTTCSEEECCSSCCCCCCTT------------TTTTCTTCSEEECCSSCCCCCCTTTT
T ss_pred CCCEEEeCCCCcCccC-ccC--CCCCcEEEcCCCcCCccChh------------hhcCcccCCEEECCCCCcCccChhhc
Confidence 3567777777776533 222 36788888888888877766 57888888888888888888777777
Q ss_pred cCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcc
Q 007693 432 STFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS 474 (593)
Q Consensus 432 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 474 (593)
..+++|++|+|++|+|+++.+..|..+++|+.|+|++|+++..
T Consensus 75 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 75 DKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred cCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 8888888888888888887777788888888888888887643
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.30 E-value=2.7e-12 Score=113.89 Aligned_cols=107 Identities=11% Similarity=0.197 Sum_probs=83.2
Q ss_pred CcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCcccccc
Q 007693 353 LEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLS 432 (593)
Q Consensus 353 L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 432 (593)
-+.+++++|.++..+. .+ .++|++|+|++|++.+..+. .|..+++|++|+|++|++++..+..|.
T Consensus 14 ~~~l~~~~n~l~~iP~-~~--~~~L~~L~Ls~N~l~~~~~~------------~~~~l~~L~~L~Ls~N~l~~i~~~~~~ 78 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPA-GI--PTDKQRLWLNNNQITKLEPG------------VFDHLVNLQQLYFNSNKLTAIPTGVFD 78 (174)
T ss_dssp SSEEECCSSCCSSCCS-CC--CTTCSEEECCSSCCCCCCTT------------TTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CcEEEeCCCCCCccCC-Cc--CCCCcEEEeCCCCccccCHH------------HhcCCcCCCEEECCCCCCCccChhHhC
Confidence 4677777777765432 22 37788888888888887776 588888888888888888886666678
Q ss_pred CCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcc
Q 007693 433 TFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS 474 (593)
Q Consensus 433 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 474 (593)
.+++|++|+|++|+|+++.+..|..+++|+.|+|++|++...
T Consensus 79 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 79 KLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred CcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 888888888888888887776688888888888888887753
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.30 E-value=4.7e-12 Score=126.35 Aligned_cols=115 Identities=17% Similarity=0.188 Sum_probs=95.3
Q ss_pred EEEeeCC-ccCccccccccchhhhhhHHhhccCCccCEEecCC-CCcCCCccccccCCCCCcEEecCCCCCCchhHHhhh
Q 007693 379 FIDISNT-DIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQ-TQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLS 456 (593)
Q Consensus 379 ~L~Ls~n-~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 456 (593)
.++++++ .++.++ . +..+++|++|+|++ |.+++..+..|..+++|+.|+|++|+|+++.+..|.
T Consensus 12 ~v~~~~~n~l~~ip-~-------------l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 77 (347)
T 2ifg_A 12 GLRCTRDGALDSLH-H-------------LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH 77 (347)
T ss_dssp CEECCSSCCCTTTT-T-------------SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGG
T ss_pred EEEcCCCCCCCccC-C-------------CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhc
Confidence 4577776 665432 1 56677888888886 888887777888999999999999999998888899
Q ss_pred cCCCCcEEEecCcccCcccccCccCCCCCceEecCCCccCCHHHHHHHHhhC
Q 007693 457 SLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMH 508 (593)
Q Consensus 457 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 508 (593)
++++|+.|+|++|+|+++++..+..++ |+.|+|.+|++.|+|.+.++..+.
T Consensus 78 ~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~ 128 (347)
T 2ifg_A 78 FTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWE 128 (347)
T ss_dssp SCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHH
T ss_pred CCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHH
Confidence 999999999999999988777777666 999999999999999988886654
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.26 E-value=4.1e-11 Score=121.64 Aligned_cols=303 Identities=11% Similarity=0.139 Sum_probs=184.1
Q ss_pred HHHhcCCC-CCCEEEcCCCCCChhhHHHhhcCCCCCEEEccCC---ccCccchHhhcCCCCCCeeeccccCCc-----CC
Q 007693 157 IALLSSLQ-NLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGS---QVSNRGAAVLKMFPRLSFLNLAWTGVT-----KL 227 (593)
Q Consensus 157 ~~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n---~l~~~~~~~l~~l~~L~~L~l~~n~l~-----~l 227 (593)
..+|.+++ .|+.+.+.. .+..+...+|.+|.+|+.+.+..+ .++.....+|..+.+|+.+.+..+ ++ .+
T Consensus 56 ~~aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF 133 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF 133 (394)
T ss_dssp TTTTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred HhhccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence 34455553 366666653 244445556666666666666544 244455566666666666655433 22 23
Q ss_pred CCCCCCcEEEcCCCcccchhcccC-CCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcc-hhhhcccCCCccE
Q 007693 228 PNISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLS-RFCFLTQMKALEH 305 (593)
Q Consensus 228 ~~l~~L~~L~l~~n~l~~l~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~-~~~~l~~~~~L~~ 305 (593)
..+.+|+.+.+..+ +..+....+ .+..|+.+.+.++ +..+... .| ....|+.+.+..+... +..++..+..+..
T Consensus 134 ~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~-aF-~~~~l~~i~ip~~~~~i~~~af~~c~~l~~ 209 (394)
T 4gt6_A 134 HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEER-AF-TGTALTQIHIPAKVTRIGTNAFSECFALST 209 (394)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTT-TT-TTCCCSEEEECTTCCEECTTTTTTCTTCCE
T ss_pred hhhcccccccccce-eeeecccceecccccccccccce-eeEeccc-cc-cccceeEEEECCcccccccchhhhccccce
Confidence 45667777777533 444544444 7778888777654 3333222 22 2356777776544322 1255566666666
Q ss_pred EEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCC
Q 007693 306 LDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNT 385 (593)
Q Consensus 306 L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n 385 (593)
............- .+ ...+.........+ .....+..+.+... ++.....+|.++..|+.+.+..+
T Consensus 210 ~~~~~~~~~~~~~-~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~ 275 (394)
T 4gt6_A 210 ITSDSESYPAIDN-VL-----------YEKSANGDYALIRY-PSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDS 275 (394)
T ss_dssp EEECCSSSCBSSS-CE-----------EEECTTSCEEEEEC-CTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTT
T ss_pred ecccccccccccc-ee-----------eccccccccccccc-ccccccceEEcCCc-ceEcccceeeecccccEEecccc
Confidence 6655433221100 00 00000000000000 11234555555432 33334457889999999999765
Q ss_pred ccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEE
Q 007693 386 DIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLS 465 (593)
Q Consensus 386 ~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 465 (593)
.. ..... +|.++++|+.+.+. +.++.+...+|.+|.+|+.+++..+ ++.+...+|.+|.+|+.+.
T Consensus 276 ~~-~I~~~------------aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ 340 (394)
T 4gt6_A 276 VV-SIGTG------------AFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIA 340 (394)
T ss_dssp CC-EECTT------------TTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred cc-eecCc------------ccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEE
Confidence 43 22233 68999999999996 4567767788999999999999864 7777788999999999999
Q ss_pred ecCcccCcccccCccCCCCCceEecCCCcc
Q 007693 466 IRDAVLTNSGLGSFKPPRSLKLLDLHGGWL 495 (593)
Q Consensus 466 L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~ 495 (593)
+..+ ++.++..+|.+|++|+.+++.++..
T Consensus 341 ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 341 IPSS-VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp ECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred ECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence 9765 8888899999999999999998854
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.10 E-value=4.6e-10 Score=113.29 Aligned_cols=304 Identities=13% Similarity=0.158 Sum_probs=152.5
Q ss_pred HHhhcCCCCCcEEEccCCCCChhHHHHhcCCCCCCEEEcCCCCCChhhHHHhhcCCCCCEEEccCCccCccchHhhcCCC
Q 007693 133 MKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFP 212 (593)
Q Consensus 133 ~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 212 (593)
.+++....+|+.+.+.. .++.++..+|.+|.+|+.+.+..+ +..+...+|.++ +|+.+.+..+ +......+|...
T Consensus 39 ~~~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~- 113 (379)
T 4h09_A 39 IPWYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT- 113 (379)
T ss_dssp STTGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-
T ss_pred ccccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-
Confidence 34455566788777754 355555667788888888888643 555556667666 5666666432 444444455443
Q ss_pred CCCeeeccccCCcCCCCCCCCcEEEcCCCcccchhcccCCCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcc
Q 007693 213 RLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLS 292 (593)
Q Consensus 213 ~L~~L~l~~n~l~~l~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~ 292 (593)
+|+.+.+..+ +..+....+....++.+.+..+ +..+.. ..+..+..++.+.+..+...
T Consensus 114 ~L~~i~lp~~--------------------~~~i~~~~F~~~~l~~~~~~~~-v~~i~~-~~f~~~~~l~~~~~~~~~~~ 171 (379)
T 4h09_A 114 DLDDFEFPGA--------------------TTEIGNYIFYNSSVKRIVIPKS-VTTIKD-GIGYKAENLEKIEVSSNNKN 171 (379)
T ss_dssp CCSEEECCTT--------------------CCEECTTTTTTCCCCEEEECTT-CCEECS-CTTTTCTTCCEEEECTTCSS
T ss_pred CcccccCCCc--------------------cccccccccccceeeeeeccce-eecccc-chhcccccccccccccccce
Confidence 4555555432 1122222222222332222221 111100 11223334444333322211
Q ss_pred hh--------------hhcccCCCccEEEccCCCCChhHHHHHHhccCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEc
Q 007693 293 RF--------------CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSL 358 (593)
Q Consensus 293 ~~--------------~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l 358 (593)
.. ..+..+..+..+.+.... .......+.. +..|+.+.+..+ ++..+...+ ..+..|+.+.+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~f~~-~~~l~~i~~~~~-~~~i~~~~f-~~~~~L~~i~l 247 (379)
T 4h09_A 172 YVAENYVLYNKNKTILESYPAAKTGTEFTIPSTV-KTVTAYGFSY-GKNLKKITITSG-VTTLGDGAF-YGMKALDEIAI 247 (379)
T ss_dssp EEEETTEEEETTSSEEEECCTTCCCSEEECCTTC-CEECTTTTTT-CSSCSEEECCTT-CCEECTTTT-TTCSSCCEEEE
T ss_pred eecccceecccccceeccccccccccccccccce-eEEeeccccc-ccccceeeeccc-eeEEccccc-cCCccceEEEc
Confidence 00 122233444444443321 1111111111 255666665433 222222232 34666666666
Q ss_pred cCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCCCCc
Q 007693 359 SGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELI 438 (593)
Q Consensus 359 ~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 438 (593)
..+ ++.+...+|.++.+|+.+.+..+ +...... +|.+|++|+.+.+.++.++.+...+|.+|.+|+
T Consensus 248 p~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~------------aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 248 PKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYL------------LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS 313 (379)
T ss_dssp CTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTT------------TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred CCC-ccEeCccccceeehhcccccccc-ceecccc------------ccccccccccccccccccceehhhhhcCCCCCC
Confidence 554 44444455666667777766543 3333222 566677777777766666665566667777777
Q ss_pred EEecCCCCCCchhHHhhhcCCCCcEEEecCcccCcccccCccCCC
Q 007693 439 HLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPR 483 (593)
Q Consensus 439 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 483 (593)
.+.|..+ ++.+...+|.+|.+|+.+.+..+ ++.++..+|.++.
T Consensus 314 ~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 314 SVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred EEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 7777543 55555566677777777766543 5556666666654
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.08 E-value=1.3e-10 Score=101.02 Aligned_cols=83 Identities=19% Similarity=0.389 Sum_probs=41.5
Q ss_pred CccEEEcCCCCccCchHHHhhhCCCCCcEEecCCCCCCChhhHHhhcCC----CCCcEEEccCC-CCChhHHHHhcCCCC
Q 007693 91 YLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSI----STLEKLWLSET-GLTADGIALLSSLQN 165 (593)
Q Consensus 91 ~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~~----~~L~~L~L~~~-~~~~~~~~~l~~l~~ 165 (593)
+|++||+++|. +++..+..+.+|++|++|+|++|..+++.+...++.+ ++|++|+|++| .+++.+...++.+++
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 34555555554 5554444445555555555555544555555554443 24555555554 355544444555555
Q ss_pred CCEEEcCCC
Q 007693 166 LSVLDLGGL 174 (593)
Q Consensus 166 L~~L~L~~n 174 (593)
|++|++++|
T Consensus 141 L~~L~L~~c 149 (176)
T 3e4g_A 141 LKYLFLSDL 149 (176)
T ss_dssp CCEEEEESC
T ss_pred CCEEECCCC
Confidence 555555554
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.07 E-value=1.5e-10 Score=115.30 Aligned_cols=104 Identities=17% Similarity=0.206 Sum_probs=72.5
Q ss_pred EEEcCCC-CCCCchHHHHHcCCCCCcEEEccC-CCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhHHhh
Q 007693 330 NLNLSNT-RFSSAGVGILAGHLPNLEILSLSG-TQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTAL 407 (593)
Q Consensus 330 ~L~l~~n-~l~~~~~~~~~~~~~~L~~L~l~~-n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~ 407 (593)
.++++++ .++..+. + ..+++|++|+|++ |.+++..+..|..+++|+.|+|++|++.+.++. .|
T Consensus 12 ~v~~~~~n~l~~ip~--l-~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~------------~~ 76 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH--L-PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD------------AF 76 (347)
T ss_dssp CEECCSSCCCTTTTT--S-CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT------------GG
T ss_pred EEEcCCCCCCCccCC--C-CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHH------------Hh
Confidence 4566666 6766544 3 5567777777775 777776666677777777777777777777666 57
Q ss_pred ccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCc
Q 007693 408 QNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTD 449 (593)
Q Consensus 408 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 449 (593)
..+++|+.|+|++|+|++..+..|..++ |+.|+|.+|.+..
T Consensus 77 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 77 HFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp GSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred cCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 7777777777777777775555555555 7777777777664
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.07 E-value=6.8e-10 Score=112.03 Aligned_cols=318 Identities=12% Similarity=0.110 Sum_probs=170.0
Q ss_pred HHhcCCCccEEEcCCCCccCchHHHhhhCCCCCcEEecCCCCCCChhhHHhhcCCCCCcEEEccCCCCChhHHHHhcCCC
Q 007693 85 YLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQ 164 (593)
Q Consensus 85 ~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~l~ 164 (593)
++....+|+.+.+.. .++.....+|.+|.+|+.+++..+ ++..+..+|.++ +|+.+.+..+ +..++..+|..+
T Consensus 41 ~~~~~~~i~~v~ip~--~vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~- 113 (379)
T 4h09_A 41 WYKDRDRISEVRVNS--GITSIGEANFNSCYNMTKVTVAST--VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT- 113 (379)
T ss_dssp TGGGGGGCSEEEECT--TEEEECTTTTTTCTTCCEEEECTT--CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-
T ss_pred ccccccCCEEEEeCC--CccChHHHHhhCCCCCCEEEeCCc--ceEechhhhcCC-CCceEECCce-eeEeccceeccC-
Confidence 455567788888875 367767777888888888888754 566666667666 5666666433 444444455544
Q ss_pred CCCEEEcCCCCCChhhHHHhhcCCCCCEEEccCCccCccchHhhcCCCCCCeeeccccCCcCCCCCCCCcEEEcCCCccc
Q 007693 165 NLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTID 244 (593)
Q Consensus 165 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~l~~n~l~ 244 (593)
+|+.+.+..+ +.......|.++ +|+.+.+..+ ++.....+|..+..++.+.+..+........ ....+...
T Consensus 114 ~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~------~~~~~~~~ 184 (379)
T 4h09_A 114 DLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAEN------YVLYNKNK 184 (379)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEET------TEEEETTS
T ss_pred CcccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeeccc------ceeccccc
Confidence 6777777653 222233344433 3444444322 2333333444444444444332211100000 00000000
Q ss_pred chhcccCCCCCcceEeccCccccchhhHHhhhcCCCccEEeccCCCcchhhhcccCCCccEEEccCCCCChhHHHHHHhc
Q 007693 245 SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACV 324 (593)
Q Consensus 245 ~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~ 324 (593)
........+..+..+.+..... ......+..+..|+.+.+..+ +.......+...
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~------------------------~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~ 239 (379)
T 4h09_A 185 TILESYPAAKTGTEFTIPSTVK------------------------TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGM 239 (379)
T ss_dssp SEEEECCTTCCCSEEECCTTCC------------------------EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTC
T ss_pred ceecccccccccccccccccee------------------------EEeecccccccccceeeeccc-eeEEccccccCC
Confidence 0111111222222222222110 011133344455555555432 222222233332
Q ss_pred cCCCcEEEcCCCCCCCchHHHHHcCCCCCcEEEccCCCCChHHHHHhhcCCCCCEEEeeCCccCccccccccchhhhhhH
Q 007693 325 GANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSL 404 (593)
Q Consensus 325 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~ 404 (593)
..|+.+.+..+ ++..+..++ ..+.+|+.+.+..+ +......+|.++++|+.+.+.++.+......
T Consensus 240 -~~L~~i~lp~~-v~~I~~~aF-~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~----------- 304 (379)
T 4h09_A 240 -KALDEIAIPKN-VTSIGSFLL-QNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPR----------- 304 (379)
T ss_dssp -SSCCEEEECTT-CCEECTTTT-TTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTT-----------
T ss_pred -ccceEEEcCCC-ccEeCcccc-ceeehhcccccccc-ceeccccccccccccccccccccccceehhh-----------
Confidence 56666666544 444333333 45777888877654 5444455677888888888887777665555
Q ss_pred HhhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCCCCCCchhHHhhhcCCCC
Q 007693 405 TALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKL 461 (593)
Q Consensus 405 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 461 (593)
+|.+|.+|+.+.|..+ ++.+...+|.+|.+|+.+.+..+ ++.+...+|.++..+
T Consensus 305 -aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 305 -VFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSIT 358 (379)
T ss_dssp -TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred -hhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence 6888888888888654 66666677888888888888654 666666777776543
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.04 E-value=6.7e-10 Score=110.10 Aligned_cols=75 Identities=21% Similarity=0.342 Sum_probs=45.3
Q ss_pred CCCCCcEEecCCCCCCchhHHhhh---cCCCCcEEEecCcccCcccccC----ccCCCCCceEecCCCccCCHHHHHHHH
Q 007693 433 TFKELIHLSLRNASLTDVSLHQLS---SLSKLTNLSIRDAVLTNSGLGS----FKPPRSLKLLDLHGGWLLTEDAILQFC 505 (593)
Q Consensus 433 ~l~~L~~L~L~~n~l~~~~~~~l~---~l~~L~~L~L~~n~l~~~~~~~----~~~~~~L~~L~l~~n~~~~~~~~~~~~ 505 (593)
.+|+|++|+|.+|.+++..+..+. .+++|++|+|+.|.+++.++.. +..+++|+.|++++|.+ ++.....+.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i-~d~~~~~l~ 328 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL-SDEMKKELQ 328 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC-CHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC-CHHHHHHHH
Confidence 356667777766666654433333 3566777777777766643322 23356777777777764 666666666
Q ss_pred hhC
Q 007693 506 KMH 508 (593)
Q Consensus 506 ~~~ 508 (593)
+.+
T Consensus 329 ~al 331 (362)
T 2ra8_A 329 KSL 331 (362)
T ss_dssp HHC
T ss_pred HHc
Confidence 544
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.01 E-value=6.4e-09 Score=103.04 Aligned_cols=86 Identities=16% Similarity=0.265 Sum_probs=58.8
Q ss_pred cCCCccEEEccCCCCChhHHHHHHh--ccCCCcEEEcCCCCCCCchHHHHHc---CCCCCcEEEccCCCCChHHHHHhhc
Q 007693 299 QMKALEHLDLSSSMIGDDSVEMVAC--VGANLRNLNLSNTRFSSAGVGILAG---HLPNLEILSLSGTQIDDYAISYMSM 373 (593)
Q Consensus 299 ~~~~L~~L~L~~n~l~~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~---~~~~L~~L~l~~n~i~~~~~~~l~~ 373 (593)
.+++|++|++.+|.+++.....+.. .+++|++|+++.|.+++.+...+.. .+++|+.|++++|.+++.....+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 4678888888888887766555553 2367888888888777766555542 3577888888888777766666653
Q ss_pred -CCCCCEEEeeCCc
Q 007693 374 -MPSLKFIDISNTD 386 (593)
Q Consensus 374 -~~~L~~L~Ls~n~ 386 (593)
+ ...+++++++
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 3 3556777665
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.96 E-value=6.1e-10 Score=96.77 Aligned_cols=104 Identities=17% Similarity=0.226 Sum_probs=91.1
Q ss_pred CccCEEecCCCCcCCCccccccCCCCCcEEecCCCC-CCchhHHhhhcC----CCCcEEEecCcc-cCcccccCccCCCC
Q 007693 411 NHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNAS-LTDVSLHQLSSL----SKLTNLSIRDAV-LTNSGLGSFKPPRS 484 (593)
Q Consensus 411 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l----~~L~~L~L~~n~-l~~~~~~~~~~~~~ 484 (593)
..|++||+++|.+++.....+..+++|++|+|++|. |++.....++.+ ++|++|+|++|. ||+.+...+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 468999999999998878888999999999999995 999888888875 589999999985 99988888899999
Q ss_pred CceEecCCCccCCHHH--HHHHHhhCCcEEEE
Q 007693 485 LKLLDLHGGWLLTEDA--ILQFCKMHPRIEVW 514 (593)
Q Consensus 485 L~~L~l~~n~~~~~~~--~~~~~~~~~~l~~~ 514 (593)
|++|+|++|+-+++.+ ...+...+|++.+.
T Consensus 141 L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V~ 172 (176)
T 3e4g_A 141 LKYLFLSDLPGVKEKEKIVQAFKTSLPSLELK 172 (176)
T ss_dssp CCEEEEESCTTCCCHHHHHHHHHHHCTTCEEE
T ss_pred CCEEECCCCCCCCchHHHHHHHHHHCCCcEEE
Confidence 9999999999888765 56778889998876
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.93 E-value=9.1e-09 Score=91.96 Aligned_cols=122 Identities=20% Similarity=0.149 Sum_probs=80.9
Q ss_pred hHHHHHhcCCCccEEEcCCCCccCchHHHh----hhCCCCCcEEecCCCCCCChhhHHhhc----CCCCCcEEEccCCCC
Q 007693 81 EWMAYLGAFRYLRSLNVADCRRVTSSALWA----LTGMTCLKELDLSRCVKVTDAGMKHLL----SISTLEKLWLSETGL 152 (593)
Q Consensus 81 ~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~----l~~l~~L~~L~L~~~~~l~~~~~~~l~----~~~~L~~L~L~~~~~ 152 (593)
.+...+...+.|++|+|++|+.+.+..... +...++|++|+|++| .+++.+...++ ..+.|++|+|++|.+
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 345566677778888888772276655443 345677888888887 57766654443 446788888888888
Q ss_pred ChhHHH----HhcCCCCCCEEEc--CCCCCChhhHH----HhhcCCCCCEEEccCCccCcc
Q 007693 153 TADGIA----LLSSLQNLSVLDL--GGLPVTDLVLR----SLQVLTKLEYLDLWGSQVSNR 203 (593)
Q Consensus 153 ~~~~~~----~l~~l~~L~~L~L--~~n~l~~~~~~----~l~~l~~L~~L~L~~n~l~~~ 203 (593)
++.+.. ++...++|++|++ ++|.+...... .+...++|++|++++|.+...
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 776543 3445677888888 77777765443 334557788888888776543
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.87 E-value=9.8e-09 Score=91.77 Aligned_cols=115 Identities=15% Similarity=0.070 Sum_probs=82.1
Q ss_pred HHhhhCCCCCcEEecCCCCCCChhhHHhh----cCCCCCcEEEccCCCCChhHHHH----hcCCCCCCEEEcCCCCCChh
Q 007693 108 LWALTGMTCLKELDLSRCVKVTDAGMKHL----LSISTLEKLWLSETGLTADGIAL----LSSLQNLSVLDLGGLPVTDL 179 (593)
Q Consensus 108 ~~~l~~l~~L~~L~L~~~~~l~~~~~~~l----~~~~~L~~L~L~~~~~~~~~~~~----l~~l~~L~~L~L~~n~l~~~ 179 (593)
...+..++.|++|+|++|..+++.+...+ ...++|++|+|++|.+.+.+... +...++|++|+|++|.+.+.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 44567889999999999856777665544 46789999999999998876543 44568899999999999876
Q ss_pred hHH----HhhcCCCCCEEEc--cCCccCccchHhhc----CCCCCCeeecccc
Q 007693 180 VLR----SLQVLTKLEYLDL--WGSQVSNRGAAVLK----MFPRLSFLNLAWT 222 (593)
Q Consensus 180 ~~~----~l~~l~~L~~L~L--~~n~l~~~~~~~l~----~l~~L~~L~l~~n 222 (593)
... .+...++|++|++ ++|.+++.....+. ..++|++|++++|
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 543 4456678999999 77888876554443 3344444444433
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.28 E-value=1e-07 Score=89.42 Aligned_cols=79 Identities=25% Similarity=0.287 Sum_probs=44.2
Q ss_pred cCCCCCEEEeeCCccCccc--cccccchhhhhhHHhhccCCccCEEecCCCCcCCCccccccCCC--CCcEEecCCCCCC
Q 007693 373 MMPSLKFIDISNTDIKGFI--QQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFK--ELIHLSLRNASLT 448 (593)
Q Consensus 373 ~~~~L~~L~Ls~n~i~~~~--~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~ 448 (593)
++++|+.|+|++|++.+.. +. .+..+++|+.|+|++|.|++. ..+..+. +|++|+|++|.+.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~------------~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSS------------IVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTT------------HHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTG
T ss_pred hCCCCCEEECCCCCCCCCccchh------------HHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCc
Confidence 5667777777777766532 22 345666666666666666653 2222222 5666666666665
Q ss_pred chh-------HHhhhcCCCCcEEE
Q 007693 449 DVS-------LHQLSSLSKLTNLS 465 (593)
Q Consensus 449 ~~~-------~~~l~~l~~L~~L~ 465 (593)
+.. ...+..+|+|+.||
T Consensus 234 ~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 234 DTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGCSSHHHHHHHHHHHCTTCCEES
T ss_pred cccCcchhHHHHHHHHCcccCeEC
Confidence 422 12345566666554
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.25 E-value=9.6e-07 Score=82.78 Aligned_cols=80 Identities=21% Similarity=0.187 Sum_probs=47.0
Q ss_pred ccCCccCEEecCCCCcCCC--ccccccCCCCCcEEecCCCCCCchhHHhhhcCC--CCcEEEecCcccCcccc-------
Q 007693 408 QNLNHLERLNLEQTQVSDA--TLFPLSTFKELIHLSLRNASLTDVSLHQLSSLS--KLTNLSIRDAVLTNSGL------- 476 (593)
Q Consensus 408 ~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~------- 476 (593)
..+++|+.|+|++|.+++. ++..+..+++|+.|+|++|+|++. ..+..+. +|++|+|++|.+.+..+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 4566777777777777662 234445667777777777777664 1233333 67777777777665322
Q ss_pred cCccCCCCCceEe
Q 007693 477 GSFKPPRSLKLLD 489 (593)
Q Consensus 477 ~~~~~~~~L~~L~ 489 (593)
..+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 1234456666665
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.21 E-value=1.9e-05 Score=69.89 Aligned_cols=119 Identities=13% Similarity=0.155 Sum_probs=74.9
Q ss_pred hHHHHHhcCCCccEEEcCCCCccCchHHHh----hhCCCCCcEEecCCCCCCChhhHHhhc----CCCCCcEEEccCCCC
Q 007693 81 EWMAYLGAFRYLRSLNVADCRRVTSSALWA----LTGMTCLKELDLSRCVKVTDAGMKHLL----SISTLEKLWLSETGL 152 (593)
Q Consensus 81 ~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~----l~~l~~L~~L~L~~~~~l~~~~~~~l~----~~~~L~~L~L~~~~~ 152 (593)
.+...+.+-+.|++|+|++++.|.+....+ +.....|++|+|++| .+++.+...|+ .-+.|++|+|++|.|
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~I 110 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFL 110 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence 344445556777778877653366655443 345567888888877 67776665555 447788888888888
Q ss_pred ChhHHHHh----cCCCCCCEEEcCCC---CCChhh----HHHhhcCCCCCEEEccCCcc
Q 007693 153 TADGIALL----SSLQNLSVLDLGGL---PVTDLV----LRSLQVLTKLEYLDLWGSQV 200 (593)
Q Consensus 153 ~~~~~~~l----~~l~~L~~L~L~~n---~l~~~~----~~~l~~l~~L~~L~L~~n~l 200 (593)
+..+..++ ..-+.|++|+|+++ .+.... ...+..-+.|+.|+++.+.+
T Consensus 111 g~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 111 TPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp CHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred CHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 77665433 34456788888654 444432 33445557777777776543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.20 E-value=5.9e-06 Score=73.13 Aligned_cols=110 Identities=15% Similarity=0.152 Sum_probs=57.5
Q ss_pred CCCccEEeccCC-Ccchh------hhcccCCCccEEEccCCCCChhHHHHHHhcc---CCCcEEEcCCCCCCCchHHHHH
Q 007693 278 TSLLSFLDVSNS-SLSRF------CFLTQMKALEHLDLSSSMIGDDSVEMVACVG---ANLRNLNLSNTRFSSAGVGILA 347 (593)
Q Consensus 278 ~~~L~~L~ls~n-~l~~~------~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~---~~L~~L~l~~n~l~~~~~~~~~ 347 (593)
.+.|+.|++++| .+... ..+...+.|+.|+|++|.+++.+...++... +.|++|+|++|.|++.+...++
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 345555555543 44321 3444556666666666666665554444322 5666666666666665555444
Q ss_pred cCC---CCCcEEEccCC---CCChHH----HHHhhcCCCCCEEEeeCCcc
Q 007693 348 GHL---PNLEILSLSGT---QIDDYA----ISYMSMMPSLKFIDISNTDI 387 (593)
Q Consensus 348 ~~~---~~L~~L~l~~n---~i~~~~----~~~l~~~~~L~~L~Ls~n~i 387 (593)
..+ ..|++|+|++| .+.+.. ...+..-+.|+.|+++.|.+
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 322 34666666543 344432 22333445666666655543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.79 E-value=1.5e-05 Score=66.01 Aligned_cols=69 Identities=13% Similarity=0.047 Sum_probs=55.6
Q ss_pred cEEecCCCCCC--chhHHhhhcCCCCcEEEecCcccCcccccCccCCCCCceEecCCCccCCHHHHHHHHhhCC
Q 007693 438 IHLSLRNASLT--DVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHP 509 (593)
Q Consensus 438 ~~L~L~~n~l~--~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 509 (593)
..++.+++.++ . +|..+ .++|+.|+|++|+|+.+....|..+++|+.|+|++|++.|+|.+.+|..|+.
T Consensus 11 ~~v~Cs~~~L~~~~-vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~ 81 (130)
T 3rfe_A 11 TLVDCGRRGLTWAS-LPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLA 81 (130)
T ss_dssp TEEECCSSCCCTTT-SCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHH
T ss_pred CEEEeCCCCCcccc-CCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHHHH
Confidence 35677777776 4 33222 2468999999999999888888889999999999999999999999988764
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.45 E-value=0.0038 Score=51.32 Aligned_cols=56 Identities=13% Similarity=0.109 Sum_probs=33.0
Q ss_pred EEecCCCCcC-CCccccccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecCcccC
Q 007693 415 RLNLEQTQVS-DATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLT 472 (593)
Q Consensus 415 ~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 472 (593)
.++.+++.++ ..+|..+ .++|+.|+|++|+|+.+.+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5556666665 1234332 234666677777666666666666667777777766543
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=76.73 E-value=2 Score=32.92 Aligned_cols=46 Identities=9% Similarity=0.029 Sum_probs=23.0
Q ss_pred CcCCCccccccCCCCCcEEecCCCCCCchhHHhhhcCCCCcEEEecC
Q 007693 422 QVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRD 468 (593)
Q Consensus 422 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 468 (593)
.++.+...+|.+|.+|+.+.+..+ ++.+...+|.+|.+|+.+.+.+
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344444455555555555555432 3333444555555555555544
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=69.85 E-value=7.2 Score=29.70 Aligned_cols=38 Identities=11% Similarity=0.026 Sum_probs=21.7
Q ss_pred hhccCCccCEEecCCCCcCCCccccccCCCCCcEEecCC
Q 007693 406 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRN 444 (593)
Q Consensus 406 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 444 (593)
+|.+|.+|+.+.+-.+ ++.+...+|.+|.+|+.+.+.+
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 4666666666666553 3444445566666666666654
No 167
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=53.58 E-value=11 Score=20.20 Aligned_cols=17 Identities=29% Similarity=0.558 Sum_probs=13.9
Q ss_pred ChhhhhhHHHHHHHHHH
Q 007693 1 MERERESELVRLCIEAA 17 (593)
Q Consensus 1 ~~~~~~~~L~~~c~~~~ 17 (593)
|.+.+++.|.+.|++..
T Consensus 9 fdekqieelldncietf 25 (31)
T 4h62_V 9 FDEKQIEELLDNCIETF 25 (31)
T ss_dssp -CHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 46789999999999864
Done!