Query 007694
Match_columns 593
No_of_seqs 306 out of 3813
Neff 8.6
Searched_HMMs 46136
Date Thu Mar 28 14:04:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007694.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007694hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK01862 putative voltage-gate 100.0 3.4E-75 7.3E-80 645.7 52.0 478 2-570 96-573 (574)
2 KOG0474 Cl- channel CLC-7 and 100.0 1.4E-71 3E-76 572.5 23.0 499 1-566 164-745 (762)
3 KOG0475 Cl- channel CLC-3 and 100.0 6.1E-71 1.3E-75 569.9 25.2 502 2-568 157-695 (696)
4 KOG0476 Cl- channel CLC-2 and 100.0 3.9E-67 8.4E-72 548.5 14.0 429 2-476 167-648 (931)
5 cd03684 ClC_3_like ClC-3-like 100.0 9.6E-60 2.1E-64 503.3 32.0 360 1-376 54-445 (445)
6 PRK01610 putative voltage-gate 100.0 8.2E-58 1.8E-62 484.2 36.3 327 2-357 79-406 (418)
7 PF00654 Voltage_CLC: Voltage 100.0 3E-58 6.6E-63 480.4 32.2 332 2-353 19-354 (355)
8 cd01033 ClC_like Putative ClC 100.0 1.1E-57 2.3E-62 480.2 34.3 324 1-356 63-387 (388)
9 cd01034 EriC_like ClC chloride 100.0 1.2E-56 2.7E-61 473.7 33.4 330 2-357 53-385 (390)
10 COG0038 EriC Chloride channel 100.0 1.7E-55 3.7E-60 468.7 36.4 341 2-373 91-433 (443)
11 cd01031 EriC ClC chloride chan 100.0 4.1E-55 8.9E-60 464.7 35.0 331 1-357 63-393 (402)
12 PRK05277 chloride channel prot 100.0 1.5E-54 3.2E-59 464.7 35.7 344 1-368 70-414 (438)
13 cd01036 ClC_euk Chloride chann 100.0 2.2E-55 4.9E-60 466.8 29.0 319 1-356 63-411 (416)
14 cd03683 ClC_1_like ClC-1-like 100.0 1.1E-54 2.4E-59 462.4 28.1 334 2-376 72-424 (426)
15 cd03685 ClC_6_like ClC-6-like 100.0 9.4E-54 2E-58 459.3 27.8 329 1-376 104-459 (466)
16 cd00400 Voltage_gated_ClC CLC 100.0 1.1E-51 2.3E-56 436.7 33.7 322 1-349 62-383 (383)
17 cd03682 ClC_sycA_like ClC sycA 100.0 6.6E-50 1.4E-54 420.5 34.1 313 2-352 56-371 (378)
18 PRK03655 putative ion channel 100.0 1.5E-46 3.3E-51 395.8 33.0 297 26-351 95-396 (414)
19 PRK01862 putative voltage-gate 99.9 2.9E-20 6.4E-25 206.7 21.7 184 157-356 25-220 (574)
20 cd00400 Voltage_gated_ClC CLC 99.8 1E-17 2.2E-22 177.5 16.5 178 164-357 1-188 (383)
21 COG3448 CBS-domain-containing 99.7 4.9E-17 1.1E-21 155.6 16.8 137 413-572 240-376 (382)
22 cd01031 EriC ClC chloride chan 99.7 2.4E-17 5.3E-22 175.5 15.9 178 163-356 1-188 (402)
23 PRK05277 chloride channel prot 99.7 8.2E-17 1.8E-21 173.1 18.3 184 158-356 2-198 (438)
24 PRK01610 putative voltage-gate 99.7 7.6E-16 1.6E-20 163.9 18.3 184 155-356 3-201 (418)
25 cd03682 ClC_sycA_like ClC sycA 99.7 8.6E-16 1.9E-20 162.0 17.9 175 160-356 2-181 (378)
26 COG2524 Predicted transcriptio 99.7 5.8E-16 1.3E-20 146.0 11.9 124 414-568 168-291 (294)
27 cd03685 ClC_6_like ClC-6-like 99.7 1E-15 2.2E-20 165.2 14.4 194 154-355 30-243 (466)
28 cd03683 ClC_1_like ClC-1-like 99.6 3.3E-15 7.1E-20 159.7 14.2 192 157-356 2-204 (426)
29 COG0038 EriC Chloride channel 99.6 6.3E-15 1.4E-19 157.7 16.3 183 159-357 25-217 (443)
30 cd01033 ClC_like Putative ClC 99.6 8.9E-15 1.9E-19 154.6 15.3 175 164-356 1-187 (388)
31 cd01036 ClC_euk Chloride chann 99.6 9.7E-15 2.1E-19 155.7 13.3 187 164-357 1-204 (416)
32 cd03684 ClC_3_like ClC-3-like 99.6 4E-14 8.6E-19 152.1 16.2 180 164-356 1-184 (445)
33 PRK03655 putative ion channel 99.5 4.3E-13 9.3E-18 142.1 19.6 179 155-355 11-203 (414)
34 cd01034 EriC_like ClC chloride 99.5 1.6E-13 3.4E-18 145.6 15.8 178 168-355 1-182 (390)
35 PRK11543 gutQ D-arabinose 5-ph 99.5 8.8E-14 1.9E-18 144.1 13.0 125 413-566 189-318 (321)
36 PRK10892 D-arabinose 5-phospha 99.5 2.1E-13 4.5E-18 141.6 13.4 122 416-566 200-323 (326)
37 COG3620 Predicted transcriptio 99.5 2.6E-13 5.7E-18 118.8 10.2 123 416-569 63-185 (187)
38 cd04603 CBS_pair_KefB_assoc Th 99.5 7.4E-13 1.6E-17 114.6 12.0 109 427-565 2-110 (111)
39 PRK07807 inosine 5-monophospha 99.5 6.5E-13 1.4E-17 142.5 14.0 129 407-569 78-206 (479)
40 cd04619 CBS_pair_6 The CBS dom 99.5 1E-12 2.2E-17 114.3 12.8 111 428-565 3-113 (114)
41 cd04617 CBS_pair_4 The CBS dom 99.4 1.8E-12 3.9E-17 113.5 13.0 116 427-565 2-117 (118)
42 cd04593 CBS_pair_EriC_assoc_ba 99.4 2.2E-12 4.8E-17 112.2 13.0 113 427-565 2-114 (115)
43 cd04630 CBS_pair_17 The CBS do 99.4 3.5E-12 7.6E-17 110.8 13.3 111 427-565 2-113 (114)
44 cd04608 CBS_pair_PALP_assoc Th 99.4 2.1E-12 4.5E-17 114.3 11.3 113 426-566 2-123 (124)
45 cd04618 CBS_pair_5 The CBS dom 99.4 2.2E-12 4.8E-17 109.1 10.7 94 427-565 2-97 (98)
46 PF00654 Voltage_CLC: Voltage 99.4 1.8E-12 3.9E-17 135.8 12.3 139 202-356 1-144 (355)
47 cd04605 CBS_pair_MET2_assoc Th 99.4 6.2E-12 1.3E-16 108.3 13.5 108 426-565 2-109 (110)
48 cd04641 CBS_pair_28 The CBS do 99.4 4.1E-12 8.8E-17 111.5 12.5 117 427-565 2-119 (120)
49 TIGR00400 mgtE Mg2+ transporte 99.4 2.5E-12 5.4E-17 138.6 13.2 126 413-572 126-256 (449)
50 PRK15094 magnesium/cobalt effl 99.4 2.1E-12 4.6E-17 130.8 11.8 127 415-572 64-193 (292)
51 cd04639 CBS_pair_26 The CBS do 99.4 4.5E-12 9.8E-17 109.3 12.2 109 427-565 2-110 (111)
52 cd04631 CBS_pair_18 The CBS do 99.4 4.9E-12 1.1E-16 111.6 12.4 122 427-565 2-124 (125)
53 cd04600 CBS_pair_HPP_assoc Thi 99.4 5.1E-12 1.1E-16 111.3 12.3 122 426-565 2-123 (124)
54 cd04801 CBS_pair_M50_like This 99.4 4.7E-12 1E-16 109.9 11.7 111 427-565 2-113 (114)
55 COG4109 Predicted transcriptio 99.4 2.8E-12 6E-17 126.2 10.3 119 417-569 187-307 (432)
56 cd04596 CBS_pair_DRTGG_assoc T 99.4 7.8E-12 1.7E-16 107.4 12.1 105 427-565 3-107 (108)
57 cd04623 CBS_pair_10 The CBS do 99.4 1.3E-11 2.8E-16 106.5 13.2 111 427-565 2-112 (113)
58 cd04607 CBS_pair_NTP_transfera 99.3 1.2E-11 2.6E-16 107.1 12.8 109 428-565 4-112 (113)
59 cd04624 CBS_pair_11 The CBS do 99.3 1.5E-11 3.2E-16 106.2 13.0 110 427-565 2-111 (112)
60 cd04615 CBS_pair_2 The CBS dom 99.3 1.4E-11 3E-16 106.6 12.8 110 428-565 3-112 (113)
61 cd04604 CBS_pair_KpsF_GutQ_ass 99.3 1.2E-11 2.7E-16 107.0 12.3 111 427-565 3-113 (114)
62 cd04613 CBS_pair_SpoIVFB_EriC_ 99.3 1.3E-11 2.8E-16 106.7 12.2 113 426-565 1-113 (114)
63 cd04583 CBS_pair_ABC_OpuCA_ass 99.3 1.9E-11 4.2E-16 104.8 13.0 107 426-565 2-108 (109)
64 cd04588 CBS_pair_CAP-ED_DUF294 99.3 2.6E-11 5.6E-16 104.4 13.3 108 427-565 2-109 (110)
65 cd04595 CBS_pair_DHH_polyA_Pol 99.3 2.8E-11 6E-16 104.2 13.5 108 426-565 2-109 (110)
66 cd04582 CBS_pair_ABC_OpuCA_ass 99.3 2.2E-11 4.8E-16 104.0 12.7 104 427-565 2-105 (106)
67 cd04589 CBS_pair_CAP-ED_DUF294 99.3 2.6E-11 5.7E-16 104.6 13.1 109 427-565 2-110 (111)
68 TIGR01303 IMP_DH_rel_1 IMP deh 99.3 1.6E-11 3.5E-16 131.7 14.2 127 409-570 79-205 (475)
69 cd04803 CBS_pair_15 The CBS do 99.3 2E-11 4.4E-16 107.1 12.4 120 427-565 2-121 (122)
70 cd04620 CBS_pair_7 The CBS dom 99.3 2.3E-11 4.9E-16 105.7 12.6 110 427-565 2-114 (115)
71 cd04626 CBS_pair_13 The CBS do 99.3 2.5E-11 5.4E-16 104.7 12.7 109 427-565 2-110 (111)
72 cd04800 CBS_pair_CAP-ED_DUF294 99.3 3.6E-11 7.7E-16 103.7 13.6 110 426-565 1-110 (111)
73 cd04642 CBS_pair_29 The CBS do 99.3 1.3E-11 2.8E-16 109.4 10.8 122 427-565 2-125 (126)
74 COG2239 MgtE Mg/Co/Ni transpor 99.3 9.7E-12 2.1E-16 131.3 11.7 130 410-573 124-258 (451)
75 cd04643 CBS_pair_30 The CBS do 99.3 2.3E-11 5E-16 105.7 12.2 114 427-565 2-115 (116)
76 cd04587 CBS_pair_CAP-ED_DUF294 99.3 2.9E-11 6.4E-16 104.5 12.9 111 427-565 2-112 (113)
77 cd04627 CBS_pair_14 The CBS do 99.3 2.4E-11 5.2E-16 107.1 12.5 119 427-564 2-121 (123)
78 cd04629 CBS_pair_16 The CBS do 99.3 2.1E-11 4.6E-16 105.6 11.9 112 427-565 2-113 (114)
79 cd04590 CBS_pair_CorC_HlyC_ass 99.3 3.2E-11 6.9E-16 104.0 12.8 108 427-565 2-110 (111)
80 cd04622 CBS_pair_9 The CBS dom 99.3 3E-11 6.4E-16 104.4 12.6 110 427-565 2-112 (113)
81 cd04586 CBS_pair_BON_assoc Thi 99.3 1.9E-11 4.2E-16 109.6 11.8 122 426-565 2-134 (135)
82 cd04611 CBS_pair_PAS_GGDEF_DUF 99.3 3.9E-11 8.4E-16 103.3 13.1 109 427-565 2-110 (111)
83 cd04621 CBS_pair_8 The CBS dom 99.3 3E-11 6.6E-16 108.6 12.8 121 427-565 2-134 (135)
84 cd04614 CBS_pair_1 The CBS dom 99.3 1.9E-11 4.1E-16 103.0 10.7 94 427-565 2-95 (96)
85 cd04632 CBS_pair_19 The CBS do 99.3 3E-11 6.5E-16 107.2 12.5 124 427-565 2-127 (128)
86 TIGR03520 GldE gliding motilit 99.3 9.5E-12 2.1E-16 132.2 10.5 126 413-571 186-314 (408)
87 cd04585 CBS_pair_ACT_assoc2 Th 99.3 4.4E-11 9.6E-16 104.6 13.0 120 427-565 2-121 (122)
88 TIGR00393 kpsF KpsF/GutQ famil 99.3 2.1E-11 4.5E-16 123.1 12.3 114 417-559 154-268 (268)
89 PRK07107 inosine 5-monophospha 99.3 1.7E-11 3.7E-16 132.4 12.3 121 418-568 94-220 (502)
90 cd04625 CBS_pair_12 The CBS do 99.3 6.1E-11 1.3E-15 102.4 13.4 110 427-565 2-111 (112)
91 cd04640 CBS_pair_27 The CBS do 99.3 4E-11 8.7E-16 106.2 12.0 114 427-565 2-125 (126)
92 cd04802 CBS_pair_3 The CBS dom 99.3 8.6E-11 1.9E-15 101.4 13.7 110 427-565 2-111 (112)
93 TIGR01137 cysta_beta cystathio 99.3 4.7E-11 1E-15 129.8 14.6 125 412-567 329-453 (454)
94 cd04636 CBS_pair_23 The CBS do 99.3 5.3E-11 1.1E-15 106.3 12.5 121 427-565 2-131 (132)
95 cd04602 CBS_pair_IMPDH_2 This 99.3 6.2E-11 1.3E-15 102.9 12.5 106 427-565 3-113 (114)
96 cd04635 CBS_pair_22 The CBS do 99.3 3.7E-11 8E-16 105.5 11.2 120 427-565 2-121 (122)
97 PLN02274 inosine-5'-monophosph 99.3 7E-11 1.5E-15 127.9 15.5 118 421-569 103-223 (505)
98 cd04612 CBS_pair_SpoIVFB_EriC_ 99.3 7.5E-11 1.6E-15 101.5 12.6 110 426-565 1-110 (111)
99 cd04606 CBS_pair_Mg_transporte 99.3 4.1E-11 8.9E-16 103.1 10.5 102 431-566 2-108 (109)
100 cd04601 CBS_pair_IMPDH This cd 99.2 5.3E-11 1.1E-15 102.3 11.1 107 426-565 2-109 (110)
101 COG2905 Predicted signal-trans 99.2 2.2E-11 4.9E-16 127.3 10.0 125 415-568 146-270 (610)
102 cd04599 CBS_pair_GGDEF_assoc2 99.2 1E-10 2.2E-15 99.6 12.5 102 427-564 2-103 (105)
103 cd04610 CBS_pair_ParBc_assoc T 99.2 9.8E-11 2.1E-15 100.1 12.2 105 426-565 2-106 (107)
104 cd04609 CBS_pair_PALP_assoc2 T 99.2 1.1E-10 2.3E-15 100.2 12.4 108 427-565 2-109 (110)
105 cd04637 CBS_pair_24 The CBS do 99.2 1.1E-10 2.4E-15 102.4 12.5 120 427-565 2-121 (122)
106 TIGR01302 IMP_dehydrog inosine 99.2 8.1E-11 1.8E-15 126.7 13.9 120 416-568 78-201 (450)
107 cd04594 CBS_pair_EriC_assoc_ar 99.2 1.2E-10 2.6E-15 99.4 12.1 100 429-565 4-103 (104)
108 PTZ00314 inosine-5'-monophosph 99.2 8.7E-11 1.9E-15 127.2 13.8 116 420-568 98-218 (495)
109 PRK05567 inosine 5'-monophosph 99.2 1.5E-10 3.2E-15 126.0 15.1 118 418-568 87-205 (486)
110 cd04633 CBS_pair_20 The CBS do 99.2 1.9E-10 4.1E-15 100.8 13.0 119 427-565 2-120 (121)
111 cd04592 CBS_pair_EriC_assoc_eu 99.2 1.7E-10 3.6E-15 103.4 12.3 130 427-556 2-131 (133)
112 cd04591 CBS_pair_EriC_assoc_eu 99.2 2.2E-10 4.7E-15 98.1 11.4 99 427-565 3-104 (105)
113 cd02205 CBS_pair The CBS domai 99.2 3.9E-10 8.4E-15 96.5 13.0 111 427-565 2-112 (113)
114 cd04598 CBS_pair_GGDEF_assoc T 99.2 3.8E-10 8.3E-15 98.5 12.7 113 427-565 2-118 (119)
115 cd04584 CBS_pair_ACT_assoc Thi 99.2 3.7E-10 8E-15 98.8 12.5 119 427-565 2-120 (121)
116 cd04634 CBS_pair_21 The CBS do 99.1 5.3E-10 1.2E-14 101.5 12.8 120 427-565 2-142 (143)
117 PRK14869 putative manganese-de 99.1 2.4E-10 5.2E-15 126.9 12.4 136 418-569 68-305 (546)
118 COG0517 FOG: CBS domain [Gener 99.1 9.4E-10 2E-14 95.5 13.0 112 422-563 3-116 (117)
119 cd04638 CBS_pair_25 The CBS do 99.1 9.3E-10 2E-14 94.0 12.6 104 427-565 2-105 (106)
120 PRK11573 hypothetical protein; 99.1 7.7E-10 1.7E-14 117.6 11.6 131 413-572 182-315 (413)
121 KOG0476 Cl- channel CLC-2 and 99.0 1.9E-08 4E-13 108.3 20.3 175 154-335 93-276 (931)
122 COG1253 TlyC Hemolysins and re 98.9 5E-09 1.1E-13 112.5 11.2 130 413-573 201-333 (429)
123 KOG0474 Cl- channel CLC-7 and 98.8 7.9E-09 1.7E-13 109.1 6.4 195 155-353 86-301 (762)
124 PF00571 CBS: CBS domain CBS d 98.8 1.8E-08 3.8E-13 75.8 6.5 56 496-568 1-56 (57)
125 COG4536 CorB Putative Mg2+ and 98.8 2E-08 4.4E-13 100.5 8.7 129 415-572 197-328 (423)
126 PF00571 CBS: CBS domain CBS d 98.7 1.1E-07 2.3E-12 71.6 7.7 56 420-475 1-56 (57)
127 KOG1764 5'-AMP-activated prote 98.6 3.3E-07 7.1E-12 96.1 11.3 125 427-572 238-363 (381)
128 TIGR01186 proV glycine betaine 98.6 9.3E-07 2E-11 92.4 14.1 112 424-569 248-359 (363)
129 PRK10070 glycine betaine trans 98.5 1.3E-06 2.9E-11 92.4 13.0 118 418-569 274-394 (400)
130 KOG2550 IMP dehydrogenase/GMP 98.5 3.2E-07 7E-12 92.6 7.7 110 426-568 116-228 (503)
131 COG4535 CorC Putative Mg2+ and 98.4 4.6E-07 1E-11 85.2 7.2 130 413-573 62-194 (293)
132 TIGR00400 mgtE Mg2+ transporte 98.3 8.4E-07 1.8E-11 96.0 6.2 118 417-573 194-311 (449)
133 COG3448 CBS-domain-containing 98.2 1.2E-06 2.6E-11 85.0 3.7 104 432-569 200-303 (382)
134 KOG0475 Cl- channel CLC-3 and 98.1 2.1E-06 4.5E-11 91.5 4.1 136 212-358 150-288 (696)
135 COG3620 Predicted transcriptio 97.9 2E-05 4.4E-10 69.8 6.1 59 494-570 65-123 (187)
136 PRK14869 putative manganese-de 97.8 1.8E-05 3.9E-10 88.2 5.3 135 413-565 241-390 (546)
137 cd04597 CBS_pair_DRTGG_assoc2 97.8 3.2E-05 6.9E-10 67.0 5.6 55 494-565 58-112 (113)
138 COG2524 Predicted transcriptio 97.8 4.4E-05 9.5E-10 73.2 6.2 59 493-569 171-229 (294)
139 cd04597 CBS_pair_DRTGG_assoc2 97.8 6.7E-05 1.5E-09 64.9 6.8 55 418-472 58-112 (113)
140 cd04603 CBS_pair_KefB_assoc Th 97.7 5.8E-05 1.3E-09 64.8 5.7 55 418-472 56-110 (111)
141 cd04619 CBS_pair_6 The CBS dom 97.6 0.00012 2.7E-09 63.1 6.2 56 417-472 58-113 (114)
142 cd04618 CBS_pair_5 The CBS dom 97.5 0.00018 3.9E-09 60.5 5.7 48 513-567 3-50 (98)
143 smart00116 CBS Domain in cysta 97.5 0.00033 7.3E-09 49.3 6.2 46 514-567 3-48 (49)
144 cd04641 CBS_pair_28 The CBS do 97.4 0.00033 7.1E-09 61.0 6.3 48 513-568 3-50 (120)
145 cd04607 CBS_pair_NTP_transfera 97.4 0.00044 9.5E-09 59.3 6.5 54 418-471 58-111 (113)
146 KOG1764 5'-AMP-activated prote 97.4 0.00089 1.9E-08 70.4 9.9 123 427-568 163-286 (381)
147 cd04620 CBS_pair_7 The CBS dom 97.3 0.00044 9.5E-09 59.5 6.3 56 417-472 57-114 (115)
148 cd04600 CBS_pair_HPP_assoc Thi 97.3 0.00033 7.2E-09 61.1 5.5 57 416-472 67-123 (124)
149 cd04606 CBS_pair_Mg_transporte 97.3 0.0005 1.1E-08 58.6 6.4 57 417-473 52-108 (109)
150 cd04592 CBS_pair_EriC_assoc_eu 97.3 0.0005 1.1E-08 61.4 6.6 49 513-569 3-51 (133)
151 cd04615 CBS_pair_2 The CBS dom 97.3 0.00049 1.1E-08 58.9 6.4 58 415-472 55-112 (113)
152 cd04596 CBS_pair_DRTGG_assoc T 97.3 0.00054 1.2E-08 58.2 6.6 56 417-472 52-107 (108)
153 cd04627 CBS_pair_14 The CBS do 97.3 0.00052 1.1E-08 59.9 6.5 53 420-472 70-122 (123)
154 cd04617 CBS_pair_4 The CBS dom 97.3 0.00045 9.7E-09 59.9 5.7 56 417-472 57-117 (118)
155 cd04585 CBS_pair_ACT_assoc2 Th 97.3 0.00056 1.2E-08 59.2 6.3 57 416-472 65-121 (122)
156 cd04630 CBS_pair_17 The CBS do 97.3 0.00064 1.4E-08 58.4 6.4 55 417-472 59-113 (114)
157 cd04610 CBS_pair_ParBc_assoc T 97.3 0.00071 1.5E-08 57.2 6.5 55 418-472 52-106 (107)
158 PRK05567 inosine 5'-monophosph 97.2 0.00094 2E-08 73.1 8.7 57 418-474 147-204 (486)
159 PRK07807 inosine 5-monophospha 97.2 0.0019 4.1E-08 70.1 10.9 58 418-475 148-205 (479)
160 cd04614 CBS_pair_1 The CBS dom 97.2 0.00059 1.3E-08 57.0 5.6 46 513-566 3-48 (96)
161 cd04625 CBS_pair_12 The CBS do 97.2 0.00088 1.9E-08 57.2 6.8 55 417-472 57-111 (112)
162 cd04639 CBS_pair_26 The CBS do 97.2 0.00073 1.6E-08 57.6 6.3 55 418-472 56-110 (111)
163 cd04604 CBS_pair_KpsF_GutQ_ass 97.2 0.00085 1.8E-08 57.4 6.5 55 418-472 59-113 (114)
164 TIGR01303 IMP_DH_rel_1 IMP deh 97.2 0.0031 6.8E-08 68.3 11.8 58 418-475 146-203 (475)
165 cd04602 CBS_pair_IMPDH_2 This 97.2 0.00088 1.9E-08 57.6 6.3 55 418-472 57-113 (114)
166 cd04583 CBS_pair_ABC_OpuCA_ass 97.2 0.00093 2E-08 56.6 6.3 55 418-472 54-108 (109)
167 cd04803 CBS_pair_15 The CBS do 97.2 0.00077 1.7E-08 58.5 5.8 57 416-472 65-121 (122)
168 cd04635 CBS_pair_22 The CBS do 97.2 0.00095 2.1E-08 58.0 6.3 57 416-472 65-121 (122)
169 PRK11543 gutQ D-arabinose 5-ph 97.2 0.00064 1.4E-08 70.4 6.1 59 493-568 196-256 (321)
170 PRK10892 D-arabinose 5-phospha 97.2 0.00074 1.6E-08 70.1 6.5 59 493-568 201-261 (326)
171 cd04611 CBS_pair_PAS_GGDEF_DUF 97.1 0.00097 2.1E-08 56.7 6.2 57 416-472 54-110 (111)
172 cd04608 CBS_pair_PALP_assoc Th 97.1 0.0012 2.5E-08 58.1 6.8 50 513-570 4-53 (124)
173 cd04631 CBS_pair_18 The CBS do 97.1 0.00094 2E-08 58.3 6.2 56 417-472 69-124 (125)
174 cd04587 CBS_pair_CAP-ED_DUF294 97.1 0.0007 1.5E-08 57.9 5.3 55 418-472 58-112 (113)
175 cd04593 CBS_pair_EriC_assoc_ba 97.1 0.00097 2.1E-08 57.3 6.2 55 418-472 58-114 (115)
176 cd04582 CBS_pair_ABC_OpuCA_ass 97.1 0.0012 2.5E-08 55.8 6.5 54 419-472 52-105 (106)
177 cd04623 CBS_pair_10 The CBS do 97.1 0.001 2.2E-08 56.8 6.2 55 417-472 58-112 (113)
178 COG4109 Predicted transcriptio 97.1 0.0011 2.5E-08 66.4 7.1 66 414-479 245-310 (432)
179 cd04636 CBS_pair_23 The CBS do 97.1 0.0015 3.2E-08 57.9 7.3 57 415-472 75-131 (132)
180 cd04622 CBS_pair_9 The CBS dom 97.1 0.00097 2.1E-08 57.0 5.9 54 419-472 59-112 (113)
181 cd04595 CBS_pair_DHH_polyA_Pol 97.1 0.0012 2.7E-08 56.1 6.5 56 416-472 54-109 (110)
182 cd04633 CBS_pair_20 The CBS do 97.1 0.0011 2.4E-08 57.5 6.2 57 415-472 64-120 (121)
183 cd04643 CBS_pair_30 The CBS do 97.1 0.0011 2.5E-08 56.8 6.3 48 513-568 3-50 (116)
184 cd04588 CBS_pair_CAP-ED_DUF294 97.1 0.0013 2.7E-08 56.0 6.5 55 418-472 55-109 (110)
185 cd04621 CBS_pair_8 The CBS dom 97.1 0.0013 2.8E-08 58.8 6.7 55 417-472 80-134 (135)
186 smart00116 CBS Domain in cysta 97.1 0.0016 3.5E-08 45.7 5.9 47 428-474 2-48 (49)
187 cd04613 CBS_pair_SpoIVFB_EriC_ 97.1 0.0012 2.6E-08 56.4 6.2 55 418-472 58-113 (114)
188 cd04637 CBS_pair_24 The CBS do 97.1 0.0014 3.1E-08 56.9 6.6 56 417-472 66-121 (122)
189 cd04599 CBS_pair_GGDEF_assoc2 97.1 0.0015 3.3E-08 54.9 6.6 53 418-471 51-103 (105)
190 cd04601 CBS_pair_IMPDH This cd 97.1 0.0013 2.9E-08 55.8 6.1 56 417-472 53-109 (110)
191 cd04605 CBS_pair_MET2_assoc Th 97.0 0.0017 3.8E-08 55.1 6.8 54 419-472 56-109 (110)
192 cd04626 CBS_pair_13 The CBS do 97.0 0.0015 3.3E-08 55.7 6.3 53 418-471 57-109 (111)
193 cd04640 CBS_pair_27 The CBS do 97.0 0.001 2.2E-08 58.4 5.4 57 416-472 62-125 (126)
194 cd04802 CBS_pair_3 The CBS dom 97.0 0.0015 3.3E-08 55.7 6.3 55 417-472 57-111 (112)
195 cd04642 CBS_pair_29 The CBS do 97.0 0.0013 2.9E-08 57.6 6.1 48 513-568 3-50 (126)
196 cd04629 CBS_pair_16 The CBS do 97.0 0.0012 2.6E-08 56.5 5.6 55 417-472 59-113 (114)
197 cd04632 CBS_pair_19 The CBS do 97.0 0.0017 3.6E-08 57.1 6.6 48 513-568 3-50 (128)
198 cd04612 CBS_pair_SpoIVFB_EriC_ 97.0 0.0018 3.9E-08 55.0 6.6 55 418-472 56-110 (111)
199 cd04586 CBS_pair_BON_assoc Thi 97.0 0.001 2.3E-08 59.1 5.3 56 416-472 79-134 (135)
200 cd04800 CBS_pair_CAP-ED_DUF294 97.0 0.0018 4E-08 55.1 6.5 55 417-472 56-110 (111)
201 cd04589 CBS_pair_CAP-ED_DUF294 97.0 0.002 4.4E-08 54.9 6.6 55 417-472 56-110 (111)
202 PRK07107 inosine 5-monophospha 96.9 0.0015 3.3E-08 71.1 6.8 58 416-473 159-218 (502)
203 cd04801 CBS_pair_M50_like This 96.9 0.0012 2.7E-08 56.6 4.9 56 417-472 56-113 (114)
204 cd04624 CBS_pair_11 The CBS do 96.9 0.0021 4.6E-08 54.8 6.3 55 418-472 57-111 (112)
205 cd04594 CBS_pair_EriC_assoc_ar 96.9 0.0023 5E-08 54.0 6.5 53 419-472 51-103 (104)
206 cd04584 CBS_pair_ACT_assoc Thi 96.9 0.0024 5.1E-08 55.3 6.6 57 415-472 64-120 (121)
207 TIGR03415 ABC_choXWV_ATP choli 96.9 0.0028 6.1E-08 66.8 7.9 111 414-568 270-380 (382)
208 PLN02274 inosine-5'-monophosph 96.9 0.0024 5.2E-08 69.8 7.5 61 416-476 161-223 (505)
209 cd04590 CBS_pair_CorC_HlyC_ass 96.8 0.0026 5.7E-08 54.1 6.3 48 513-568 3-51 (111)
210 TIGR00393 kpsF KpsF/GutQ famil 96.8 0.0017 3.8E-08 65.3 5.8 57 494-567 155-212 (268)
211 TIGR03520 GldE gliding motilit 96.8 0.0014 3.1E-08 70.0 5.3 63 492-568 189-251 (408)
212 TIGR01137 cysta_beta cystathio 96.8 0.0022 4.9E-08 69.8 6.8 60 492-568 333-392 (454)
213 COG0517 FOG: CBS domain [Gener 96.7 0.004 8.7E-08 53.4 6.7 52 419-470 63-116 (117)
214 cd04591 CBS_pair_EriC_assoc_eu 96.7 0.0035 7.5E-08 53.2 5.8 49 423-472 56-104 (105)
215 cd04598 CBS_pair_GGDEF_assoc T 96.7 0.0045 9.8E-08 53.4 6.6 57 416-472 59-118 (119)
216 PRK15094 magnesium/cobalt effl 96.6 0.01 2.2E-07 60.4 9.4 59 418-477 133-191 (292)
217 cd04609 CBS_pair_PALP_assoc2 T 96.5 0.0056 1.2E-07 51.8 6.0 47 513-568 3-49 (110)
218 COG2239 MgtE Mg/Co/Ni transpor 96.5 0.005 1.1E-07 65.8 6.3 63 416-478 194-256 (451)
219 cd02205 CBS_pair The CBS domai 96.5 0.0077 1.7E-07 50.6 6.4 53 420-472 60-112 (113)
220 cd04638 CBS_pair_25 The CBS do 96.4 0.0097 2.1E-07 50.1 6.8 53 419-472 53-105 (106)
221 cd04634 CBS_pair_21 The CBS do 96.4 0.012 2.6E-07 53.0 7.7 56 416-472 87-142 (143)
222 PTZ00314 inosine-5'-monophosph 96.3 0.006 1.3E-07 66.6 6.1 58 417-474 158-217 (495)
223 COG4175 ProV ABC-type proline/ 96.2 0.0067 1.5E-07 60.7 4.8 113 413-568 269-383 (386)
224 TIGR01302 IMP_dehydrog inosine 96.1 0.011 2.3E-07 64.2 6.7 59 417-475 142-201 (450)
225 COG2905 Predicted signal-trans 96.0 0.0082 1.8E-07 64.2 4.7 59 494-569 149-207 (610)
226 PRK11573 hypothetical protein; 95.9 0.014 3E-07 62.5 6.4 62 492-567 185-246 (413)
227 TIGR01186 proV glycine betaine 95.7 0.025 5.5E-07 59.3 7.2 57 419-476 303-359 (363)
228 COG1253 TlyC Hemolysins and re 95.4 0.026 5.6E-07 60.9 6.0 65 492-570 204-268 (429)
229 COG4535 CorC Putative Mg2+ and 95.0 0.0057 1.2E-07 58.2 -0.2 98 434-569 31-128 (293)
230 PRK10070 glycine betaine trans 94.6 0.083 1.8E-06 56.2 7.2 58 419-477 338-395 (400)
231 COG4536 CorB Putative Mg2+ and 94.0 0.032 6.9E-07 56.9 2.2 64 494-571 200-263 (423)
232 KOG2550 IMP dehydrogenase/GMP 93.5 0.08 1.7E-06 54.5 4.1 58 416-473 169-226 (503)
233 TIGR03415 ABC_choXWV_ATP choli 87.6 1.2 2.7E-05 47.1 6.5 54 419-475 327-380 (382)
234 COG1125 OpuBA ABC-type proline 86.8 3.6 7.8E-05 40.5 8.5 114 434-566 193-308 (309)
235 KOG2118 Predicted membrane pro 86.6 1.3 2.7E-05 48.6 6.0 130 411-570 197-330 (498)
236 COG4175 ProV ABC-type proline/ 79.0 4 8.7E-05 41.5 5.6 53 423-476 332-384 (386)
237 COG1125 OpuBA ABC-type proline 69.8 9.3 0.0002 37.8 5.4 60 413-472 244-307 (309)
238 PRK10490 sensor protein KdpD; 61.9 37 0.0008 40.4 9.6 54 122-176 447-500 (895)
239 PF01102 Glycophorin_A: Glycop 58.5 15 0.00033 31.9 4.2 17 158-174 66-82 (122)
240 COG2205 KdpD Osmosensitive K+ 56.2 83 0.0018 36.4 10.3 77 91-174 419-495 (890)
241 COG3216 Uncharacterized protei 36.0 1.6E+02 0.0035 27.3 7.1 26 80-106 46-71 (184)
242 COG5336 Uncharacterized protei 35.7 72 0.0016 27.0 4.5 37 55-91 56-92 (116)
243 PF10518 TAT_signal: TAT (twin 35.5 27 0.00058 21.4 1.5 21 76-96 4-24 (26)
244 PF04018 DUF368: Domain of unk 34.9 4.7E+02 0.01 26.0 11.1 53 156-217 187-239 (257)
245 COG2216 KdpB High-affinity K+ 33.0 76 0.0016 34.6 5.2 38 519-565 412-449 (681)
246 PF13493 DUF4118: Domain of un 27.2 84 0.0018 26.1 3.8 50 123-172 49-100 (105)
247 PF10749 DUF2534: Protein of u 26.0 2.4E+02 0.0051 22.6 5.6 63 111-177 8-71 (85)
248 PF13782 SpoVAB: Stage V sporu 23.3 2.4E+02 0.0052 24.1 5.6 29 158-186 53-81 (110)
249 PRK11388 DNA-binding transcrip 22.2 1.1E+02 0.0024 34.9 4.7 116 422-559 45-162 (638)
250 COG4956 Integral membrane prot 21.0 4.9E+02 0.011 26.6 8.1 16 123-138 11-26 (356)
251 PF10399 UCR_Fe-S_N: Ubiquitin 20.3 1.2E+02 0.0025 21.0 2.6 20 72-91 8-28 (41)
No 1
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=100.00 E-value=3.4e-75 Score=645.65 Aligned_cols=478 Identities=28% Similarity=0.421 Sum_probs=408.7
Q ss_pred CCChHHHHHHHHhcCCccccCcccccchhhHHHHHHHHHHHhcCCccCcchHHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 007694 2 MHGLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIALVA 81 (593)
Q Consensus 2 ~~g~pev~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~sG~s~G~Egp~v~iga~~~~~~~~~~~~~~~~~~~l~~ 81 (593)
++|++|++++++.+.++ +++|+...|++++++++++|+|+|||||++|+|+++|++++|+++.++++++.+++
T Consensus 96 ~~g~~~~~~~~~~~~~~-------~~~~~~~~k~~~~~l~i~~G~s~G~EgP~v~~ga~~~~~~~~~~~~~~~~~r~l~~ 168 (574)
T PRK01862 96 KGGKTDYMEAVALGDGV-------VPVRQSLWRSASSLLTIGSGGSIGREGPMVQLAALAASLVGRFAHFDPPRLRLLVA 168 (574)
T ss_pred cCCcHHHHHHHHcCCCC-------CChHHHHHHHHHHHHHHHcCCCcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 47899999999766433 45788889999999999999999999999999999999999999988777778999
Q ss_pred hhhHHHHHHhhhchHHHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHhhhcCCccceeccccCCCccchHHHHH
Q 007694 82 AGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYL 161 (593)
Q Consensus 82 ~g~aagiaa~F~aPi~G~lf~~E~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~~ 161 (593)
||+|||+||+||||++|++|++|+++++++.+.+ ++++++|++|+.+++.+.|+.+.|.++.++.++++++++++
T Consensus 169 ~G~aAglaa~F~aPl~g~lFa~E~~~~~~~~~~~-----~~~~~as~~a~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 243 (574)
T PRK01862 169 CGAAAGITSAYNAPIAGAFFVAEIVLGSIAMESF-----GPLVVASVVANIVMREFAGYQPPYEMPVFPAVTGWEVLLFV 243 (574)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHhhhccHHHH-----HHHHHHHHHHHHHHHHHcCCCceeeCCCcCcCCHHHHHHHH
Confidence 9999999999999999999999999887776653 34789999999999999999999998877777889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchHhhhhHHHHHHHHhhcccccccchhhHHHHHhcCCCCCcchHH
Q 007694 162 ILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTASAPGIW 241 (593)
Q Consensus 162 llGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iggl~~g~~~~~~p~~~~~g~~~~~~~l~~~~~~~~~~~~ 241 (593)
++|++||++|.+|++++.+++++++++ +.+++++++++|+++|++.+++|+.+|+||+.+++++++.. .+.
T Consensus 244 ~lGv~~G~~~~~f~~~~~~~~~~~~~~----~~~~~~~~~~~gl~~g~l~~~~p~~~g~G~~~i~~~~~~~~-----~~~ 314 (574)
T PRK01862 244 ALGVLCGAAAPQFLRLLDASKNQFKRL----PVPLPVRLALGGLLVGVISVWVPEVWGNGYSVVNTILHAPW-----TWQ 314 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc----CCchhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHcCCc-----hHH
Confidence 999999999999999999988776532 34566788999999999999999999999999988875422 234
Q ss_pred HHHHHHHHHHHHHHHhhccCCccceehHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcchHHHHHHHHHHHHHHhccch
Q 007694 242 LLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVP 321 (593)
Q Consensus 242 ~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~p~~~~~~~~~~~a~~G~aa~~a~~~~ap 321 (593)
.++.++++|+++|++|+|+|+|||+|+|++++||++|+++|+.++.+ +|.. ...+..|+++||+|++++++|+|
T Consensus 315 ~l~~~~~~K~~~t~~t~g~G~~GG~f~P~l~iGa~~G~~~g~~~~~~----~~~~--~~~~~~~a~vGmaa~~aa~~~aP 388 (574)
T PRK01862 315 ALVAVLVAKLIATAATAGSGAVGGVFTPTLFVGAVVGSLFGLAMHAL----WPGH--TSAPFAYAMVGMGAFLAGATQAP 388 (574)
T ss_pred HHHHHHHHHHHHHHHHHccCCCccchhhHHHHHHHHHHHHHHHHHHh----CCCc--ccchHHHHHHHHHHHHHHHHccH
Confidence 56677889999999999999999999999999999999999887653 3431 23578899999999999999999
Q ss_pred hHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccccccchhHHHhhccCCCCCCCccccchhhhccCCCCcccceec
Q 007694 322 LTSVLLLFELTRDYRILLPLMGAVGLAIWVPSVANQAKETDASDKRTLARGYSSLSPMEDKNEVLWRRTDGADELELSVV 401 (593)
Q Consensus 322 ls~~vi~~E~tg~~~~~~P~~ia~~ia~~v~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~l 401 (593)
+|++++++|+|++++.++|+|+++++|+++++.+.+ .++|+...+.++.
T Consensus 389 lt~i~l~~Elt~~~~~~~P~~ia~~~a~~v~~~~~~---~~iy~~~~~~~~~---------------------------- 437 (574)
T PRK01862 389 LMAILMIFEMTLSYQVVLPLMVSCVVAYFTARALGT---TSMYEITLRRHQD---------------------------- 437 (574)
T ss_pred HHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCC---CChHHHHHHhccc----------------------------
Confidence 999999999999999999999999999999988753 2344433322211
Q ss_pred ccccchhHHHHHHhhhhhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCC
Q 007694 402 ENAADSEAAEEMLLEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDN 481 (593)
Q Consensus 402 ~~~~~~~~~~~~~l~~i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~ 481 (593)
..+.+.++.++++|+|++++.+++++++++|+.+.+.+++.+.+||+|++++++|+|+.+|+.+.+.+++.
T Consensus 438 -------~~~~~~L~~~~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~~-- 508 (574)
T PRK01862 438 -------EAERERLRTTQMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKRD-- 508 (574)
T ss_pred -------cchhhHHhhCcHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhcccc--
Confidence 01235688999999999999999999999999999998889999999999999999999999876543221
Q ss_pred CCCCCccccccccchhhhhccCccccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehh
Q 007694 482 SKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYD 561 (593)
Q Consensus 482 ~~~~~~~~~~~~~~V~dim~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~ 561 (593)
..+.+++|+|++++ .++++|+++++++++|.+++.+++||+|+++ +++++|+||++
T Consensus 509 ---------~~~~~v~dim~~~~---------~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~------~~~liGvIt~~ 564 (574)
T PRK01862 509 ---------TTDKTAADYAHTPF---------PLLTPDMPLGDALEHFMAFQGERLPVVESEA------SPTLAGVVYKT 564 (574)
T ss_pred ---------cccchHHHhccCCC---------eeECCCCCHHHHHHHHHhcCCCeeeeEeCCC------CCeEEEEEEHH
Confidence 11347888988765 7899999999999999999999999999721 36899999999
Q ss_pred hHHHHHHHH
Q 007694 562 SIWNCLREE 570 (593)
Q Consensus 562 di~~~~~~~ 570 (593)
|+.+.+++.
T Consensus 565 DIl~~l~~~ 573 (574)
T PRK01862 565 SLLDAYRRM 573 (574)
T ss_pred HHHHHHHhh
Confidence 999998753
No 2
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-71 Score=572.55 Aligned_cols=499 Identities=23% Similarity=0.271 Sum_probs=389.8
Q ss_pred CCCChHHHHHHHHhcCCccccCcccccchhhHHHHHHHHHHHhcCCccCcchHHHHHHHHHHHHHHH-------------
Q 007694 1 MMHGLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSL------------- 67 (593)
Q Consensus 1 ~~~g~pev~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~sG~s~G~Egp~v~iga~~~~~~~~------------- 67 (593)
.|+|||||+.|+|.- +-.+.++.+|+++|++++++++++|+.+||||||||.|+++|+.++|
T Consensus 164 AGSGIPevK~YLNGV-----~iP~ivrl~TL~~Ki~Gvi~sV~gGL~~GKEGPMIHsGa~Vaagl~QG~S~~~r~~~r~f 238 (762)
T KOG0474|consen 164 AGSGIPEVKCYLNGV-----KIPGIVRLRTLIVKILGVIFSVAGGLAVGKEGPMIHSGSVVAAGLGQGGSTSLRKDWRWF 238 (762)
T ss_pred cCCCCchhhhhhcCc-----cCcceeehhhhHHhHhhhhhhhhhhhhccCcCCeeehhHHHHhcccCCCccchhhhhhhh
Confidence 389999999999554 23456899999999999999999999999999999999999998874
Q ss_pred -hhcCCHHHHHHHHHhhhHHHHHHhhhchHHHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHhhh-----cCCc
Q 007694 68 -MMENNRERKIALVAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVL-----LGTQ 141 (593)
Q Consensus 68 -~~~~~~~~~~~l~~~g~aagiaa~F~aPi~G~lf~~E~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~ 141 (593)
+||+|++|| +++.||+|||+||+|+||+||+||++||.+..|+.. .+|++|+++.+++++.+.+ .|.-
T Consensus 239 r~FrnDrdrR-D~VscGaAAGVaAAF~APvGGvLFaLEE~aS~Wnq~-----L~WR~fFss~i~~f~l~~~i~~~~~G~~ 312 (762)
T KOG0474|consen 239 RYFRNDRDRR-DLVSCGAAAGVAAAFRAPVGGVLFALEEGASWWNQA-----LLWRTFFSSAIVAFVLRAFILSCLSGKC 312 (762)
T ss_pred hhhcccchhh-hhhhcchHHhHHHHhCCCccceEEEechhhHHHHhh-----HHHHHHHHhHHHHHhHHHHHHHHhcCch
Confidence 467889887 689999999999999999999999999998766544 3567899999988888833 2221
Q ss_pred --------cceecccc-CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchHhhhhHHHHHHHHh
Q 007694 142 --------SAFTVPSY-DLKSAAELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIAL 212 (593)
Q Consensus 142 --------~~f~~~~~-~~~~~~~l~~~~llGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iggl~~g~~~~ 212 (593)
..|.+..- ..++.+|++.++++||++|++|++|+.++.+...++.+ ..+.+..+++...+..++++++++
T Consensus 313 g~f~~~GLi~f~vf~~~~~y~~~el~~f~~iGViGGlLGalfN~Ln~~~~~~r~~-~~k~k~~kvlea~~Vs~~ts~~af 391 (762)
T KOG0474|consen 313 GLFGKGGLINFDVFDGPVDYHIHELPPFLLIGVIGGLLGALFNYLNLKKVLRRYN-YEKGKIGKVLEALLVSLVTSVLAF 391 (762)
T ss_pred hccCCcceEEecccCCccccccccccceeEeehhhhhHHHHHHHHHHHHHHHHHh-ccCchHHHHHHHHHHHHHHHHHHh
Confidence 22333222 24678999999999999999999999998877766543 122222233334444555555554
Q ss_pred hcccc------------------c--ccchhhH------------HHHHhcCCCCCcchHHHHHHHHHHHHHHHHHhhcc
Q 007694 213 RYPGI------------------L--YWGFTNV------------EEILHTGKTASAPGIWLLTQLAAAKVVATALCKGS 260 (593)
Q Consensus 213 ~~p~~------------------~--~~g~~~~------------~~~l~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~ 260 (593)
..|.. . ..-|+++ .++++... ..++...|.++.++.++.+.+|+|.
T Consensus 392 ~l~~l~~C~P~~~~~~~~~~p~f~Cp~~~YNdlAtL~fnt~ddaVrnLFh~~~--~ef~~~tL~iFfv~yf~L~~~TfGi 469 (762)
T KOG0474|consen 392 GLPFLADCQPCPPSITEGQCPTFFCPDGEYNDLATLFFNTNDDAVRNLFHSPT--NEFGILTLAIFFVLYFFLACWTFGI 469 (762)
T ss_pred hhHHHhcCCCCCCCcccccCccccCCCCchhHHHHHHcCCcHHHHHHHhcCCC--CccchhHHHHHHHHHHHHHHHHhcc
Confidence 43310 0 0123333 33333321 3456677888999999999999999
Q ss_pred CCccceehHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcchHHHHHHHHHHHHHHhccchhHHHHHHHHHhCCchhHHH
Q 007694 261 GLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLP 340 (593)
Q Consensus 261 g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~p~~~~~~~~~~~a~~G~aa~~a~~~~apls~~vi~~E~tg~~~~~~P 340 (593)
.+|.|.|.|++.+||+.||++|..+.... .++|+.||++||||+++|+.||++|.++|++|+| +-.+++|
T Consensus 470 ~vpsGlFiP~iL~GAa~GRlvg~~l~~~~---------~id~G~yAllGAAa~LGG~mRMTvSL~VIl~E~T-n~~~~lP 539 (762)
T KOG0474|consen 470 AVPSGLFIPVILTGAAYGRLVGMLLGSYT---------NIDPGLYALLGAAAFLGGVMRMTVSLCVILLELT-NNLLLLP 539 (762)
T ss_pred cccccchhHHHHhhHHHHHHHHHHHHHhh---------ccCchHHHHHhHHHHhCCeEEEEeeeehHHHHhh-hhhhhhH
Confidence 99999999999999999999999887643 3689999999999999999999999999999999 7789999
Q ss_pred HHHHHHHHHHHHHhhcccccccchhHHHhhccCCCCCCCccccchhhhccCCCCcccceecccccchhHHHHHHhhhhhh
Q 007694 341 LMGAVGLAIWVPSVANQAKETDASDKRTLARGYSSLSPMEDKNEVLWRRTDGADELELSVVENAADSEAAEEMLLEELKV 420 (593)
Q Consensus 341 ~~ia~~ia~~v~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~i~v 420 (593)
+|++.++|++|+|.+|+ ++||.++..++.|++... .+..++++++
T Consensus 540 iMlvLliaK~VGD~FNe----giYd~~i~LkgvP~Le~~-------------------------------pe~~mr~L~a 584 (762)
T KOG0474|consen 540 IMLVLLIAKTVGDSFNE----GIYDIIIQLKGVPFLEWE-------------------------------PEPYMRNLTA 584 (762)
T ss_pred HHHHHHHHHHHHhhhhh----hhHHHhhhccCCccccCC-------------------------------CchHhhhhhH
Confidence 99999999999999986 689999999999977211 1245789999
Q ss_pred hhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCC-----CeEEEEEeHHHHHHHHhhccCCCC---CCCCccc---
Q 007694 421 SRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGE-----DFLEGILTYGDIKRCLSKLSSDNS---KGDSIAS--- 489 (593)
Q Consensus 421 ~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~-----~~lvGiVt~~dL~~~l~~~~~~~~---~~~~~~~--- 489 (593)
+|+|++++.+++..+.+..+.++++++.|+.|||+|+. +++.|+|-++++...++++...+. ..+....
T Consensus 585 ~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~~~~ 664 (762)
T KOG0474|consen 585 GEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVRRKF 664 (762)
T ss_pred hhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccccCcchhhcC
Confidence 99999999999999999999999999999999999973 478999999999988877654211 1111110
Q ss_pred ---c--ccccchhhhhccCc------cc-cCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEE
Q 007694 490 ---D--VNTCLVSSICTRGI------SY-RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAI 557 (593)
Q Consensus 490 ---~--~~~~~V~dim~~~~------~~-~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGi 557 (593)
| .+..+++|+-..+. ++ +.++.+|.+|++++++.++..+|++.+++|+.||++ .++.+|+
T Consensus 665 ~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~--------~~~~~gi 736 (762)
T KOG0474|consen 665 TFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPK--------TNRVVGI 736 (762)
T ss_pred CHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecC--------CCceeEE
Confidence 0 01122333221111 01 134667899999999999999999999999999998 7888999
Q ss_pred EehhhHHHH
Q 007694 558 LHYDSIWNC 566 (593)
Q Consensus 558 It~~di~~~ 566 (593)
+||+|+.+.
T Consensus 737 lTR~D~~~~ 745 (762)
T KOG0474|consen 737 LTRKDLARY 745 (762)
T ss_pred EehhhhhhH
Confidence 999998754
No 3
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.1e-71 Score=569.91 Aligned_cols=502 Identities=24% Similarity=0.312 Sum_probs=397.7
Q ss_pred CCChHHHHHHHHhcCCccccCcccccchhhHHHHHHHHHHHhcCCccCcchHHHHHHHHHHHHHHHhhc---CCHHHHHH
Q 007694 2 MHGLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMME---NNRERKIA 78 (593)
Q Consensus 2 ~~g~pev~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~sG~s~G~Egp~v~iga~~~~~~~~~~~---~~~~~~~~ 78 (593)
|+||||++..+.+-.- ..|++.||++.|.++..++++||+|+|||||+||++.++|+.++++|+ .+..++|+
T Consensus 157 gSGIpEIK~ilSGf~~-----~~~lg~~tl~iKsVal~lsvaSGLSlGKEGP~VHiA~c~g~~~s~~f~~~~~~e~~~re 231 (696)
T KOG0475|consen 157 GSGIPEIKTILSGFII-----RGFLGKWTLLIKSVALCLSVASGLSLGKEGPSVHIATCIGNIFSKIFPKYRLNEAKKRE 231 (696)
T ss_pred cCCCccceeeeccchh-----hhhhhHHHHhhhhhhheeeeccccccCCCCCceeeeechhhhHhhhhhhhccchhHHHH
Confidence 8999998887755532 238999999999999999999999999999999999999999999874 45666778
Q ss_pred HHHhhhHHHHHHhhhchHHHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHhhhc---CCccceeccccC-CCcc
Q 007694 79 LVAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLL---GTQSAFTVPSYD-LKSA 154 (593)
Q Consensus 79 l~~~g~aagiaa~F~aPi~G~lf~~E~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~f~~~~~~-~~~~ 154 (593)
++++++|||+|++|||||||++|++|+++.++..+. .|..++++.+|..+.+.+. ++++.+..+.|+ .|+.
T Consensus 232 ilsAaaAaGvavaFgAPIGGVlFslEev~~~fp~kt-----lw~sff~aLsAv~~L~~i~pf~~~~~vLf~V~Y~~~W~~ 306 (696)
T KOG0475|consen 232 ILSAAAAAGVAVAFGAPIGGVLFSLEEVSYYFPLKT-----LWRSFFCALSAVTALRSINPFGNSRLVLFYVDYDRPWSL 306 (696)
T ss_pred HHHHHhhccchhhcCCccceeeeehhhhhhcCCccc-----hHHHHHHHHHHHHHHeeecccCCCceEEEEEeccCCccc
Confidence 999999999999999999999999999985544443 4557888888888888663 234444444454 5799
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchHhhhhHHHHHHHHhhcccccccchhhHHHHHhcCCC
Q 007694 155 AELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKT 234 (593)
Q Consensus 155 ~~l~~~~llGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iggl~~g~~~~~~p~~~~~g~~~~~~~l~~~~~ 234 (593)
.|+++|+++|++||+.|.+|.|++.++.++++.. +...++.+.+.+++++++++.+..|+...++++.+.++++....
T Consensus 307 ~EL~pFi~LGifgGl~G~~~ir~n~~~~~~rK~~--~lg~~pv~ev~~vt~iTaiIs~~np~~r~~~~e~i~~Lf~~C~~ 384 (696)
T KOG0475|consen 307 FELLPFILLGIFGGLWGAFFIRLNIRFCRFRKSS--KLGKFPVLEVVFVTLVTAIISLFNPETRFNMSELITILFNKCSP 384 (696)
T ss_pred ccchHHHHHHHhhhHHHHHHHHHHHHHHhccchh--hccCCcchhHHHHHHHHHHHHhcCHHHHhhHHHHHHHHHhhcCC
Confidence 9999999999999999999999999999887655 23445567788899999999999999999999999998886443
Q ss_pred CCcch---------HHHHHHHHHHHHHHHHHhhccCCccceehHHHHHHHHHHHHHHHHHHHHHhhhCCC----CCCCcc
Q 007694 235 ASAPG---------IWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPG----NVAVAE 301 (593)
Q Consensus 235 ~~~~~---------~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~p~----~~~~~~ 301 (593)
.+... .|.|+...++|+++|++|+|+++|+|+|+|++.+||+.|+++|.+.-.+++. |+ ..+.+.
T Consensus 385 ~~s~~l~~~~~~~~~~~L~~a~i~k~~~t~ftfGakvP~GifvPSmaiGA~aGr~vG~~~e~l~~~--~~~~~fg~~ci~ 462 (696)
T KOG0475|consen 385 SSSTSLPETTVYSAAILLLLALILKIALTIFTFGAKVPAGIFVPSLAIGAIAGRAVGIIVEQLAQN--PDFNLFGLSCAT 462 (696)
T ss_pred cccccCcccchHHHHHHHHHHHHHHHHHHHhhhhccCccceecchHHHHHHHHHHHHHHHHHHhcC--CCccccchhhcC
Confidence 22222 6788889999999999999999999999999999999999999776665542 22 124578
Q ss_pred hHHHHHHHHHHHHHHhccchhHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccccccchhHHHhhccCCCCCCCcc
Q 007694 302 PQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLMGAVGLAIWVPSVANQAKETDASDKRTLARGYSSLSPMED 381 (593)
Q Consensus 302 ~~~~a~~G~aa~~a~~~~apls~~vi~~E~tg~~~~~~P~~ia~~ia~~v~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 381 (593)
|+.|+++||||.++|+||+|+|.+||+||+||++++++|+|+|+++++|+++.+.+ +++||..++.++||+++.+.+
T Consensus 463 Pg~Ya~vGaAA~LsGvtrltvtlVVImFELTG~l~~IlPlm~av~~SkwI~d~~gk---~gIyda~I~~ng~P~l~~k~e 539 (696)
T KOG0475|consen 463 PGAYALVGAAATLSGVTRLTVTLVVIMFELTGALNYILPLMLAVMISKWIGDGLGK---TGIYDAHIELNGYPFLDSKSE 539 (696)
T ss_pred chHHHHHHHHHHhcCcceeeEEEEEEeeeccCcceeHHHHHHHHHHHHHHHhcccc---chHHHHHHHhcCCCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999865 458999999999999854322
Q ss_pred ccchhhhccCCCCcccceecccccchhHHHHHHhhhhhhhhhhccC--ceEecC-CCCHHHHHHHHHhcCCcEEEEEeCC
Q 007694 382 KNEVLWRRTDGADELELSVVENAADSEAAEEMLLEELKVSRAMSKD--FVKVAL-TVTLKEAIESMKDGQQNCVLVVNGE 458 (593)
Q Consensus 382 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~i~v~~~M~~~--~~~v~~-~~~v~~~~~~l~~~~~~~~pVvd~~ 458 (593)
.. . --.+.+.+.+..+ ..+++. +++++|+..+|++++++.+||+-++
T Consensus 540 ~~-~-----------------------------t~~~~v~~p~~~~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~ 589 (696)
T KOG0475|consen 540 FS-S-----------------------------TLAIPVMEPCRSESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSE 589 (696)
T ss_pred cc-c-----------------------------chhhhhhchhcCchhheeccccceeHHHHHHHHhhcccCCceEEEcc
Confidence 11 0 0011122222222 444444 5999999999999999999998654
Q ss_pred --CeEEEEEeHHHHHHHHhhcc--CCCCCCC-Ccccc---------ccccchhhhhccCccccCCCCcceEecCCCCHHH
Q 007694 459 --DFLEGILTYGDIKRCLSKLS--SDNSKGD-SIASD---------VNTCLVSSICTRGISYRGRERGLLTCYPDTDLAI 524 (593)
Q Consensus 459 --~~lvGiVt~~dL~~~l~~~~--~~~~~~~-~~~~~---------~~~~~V~dim~~~~~~~~~~~~~~~v~~~~~l~~ 524 (593)
.+++|+|.++|+...+.... ++..... ....+ .+....+++| +.++.++..+++.+.
T Consensus 590 ~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~~~~~~~~~lk~il---------~~tp~tv~d~tp~~~ 660 (696)
T KOG0475|consen 590 DSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAVAGIPSRLDLKDIL---------DMTPFTVTDLTPMET 660 (696)
T ss_pred ccceeEEEEchHHHHHHHhhhccccccceecccccCCCCccccCCCCCCcCceeec---------cCCcccccccCcHHH
Confidence 58999999999877654221 1111000 00000 1112334444 445599999999999
Q ss_pred HHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHHHH
Q 007694 525 AKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLR 568 (593)
Q Consensus 525 a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~~~ 568 (593)
++++|++.+++++.|.+ +|++.|+||++|++++.+
T Consensus 661 v~~~F~~lg~~~~~v~~---------~G~l~Giitkkd~l~~~r 695 (696)
T KOG0475|consen 661 VVDLFRKLGLRQILVTK---------NGILLGIITKKDCLRHTR 695 (696)
T ss_pred HHHHHHhhCceEEEEcc---------CCeeEeeeehHHHHHhhc
Confidence 99999999999998877 699999999999988653
No 4
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.9e-67 Score=548.55 Aligned_cols=429 Identities=24% Similarity=0.312 Sum_probs=346.1
Q ss_pred CCChHHHHHHHHhcCCccccCcccccchhhHHHHHHHHHHHhcCCccCcchHHHHHHHHHHHHHHHhhc-------CCHH
Q 007694 2 MHGLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMME-------NNRE 74 (593)
Q Consensus 2 ~~g~pev~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~sG~s~G~Egp~v~iga~~~~~~~~~~~-------~~~~ 74 (593)
|+||||++-.+++- .-.||++.||++.|.++..+++|||+++|||||+|||++.+++.+++... .++.
T Consensus 167 GSGIPEmKtIlrGv-----~LkeYLt~KtlvAKviGLT~tLGsGlpiGKeGPFVHiasivA~~l~k~~a~~~~g~~enes 241 (931)
T KOG0476|consen 167 GSGIPEMKTILRGV-----ILKEYLTLKTLVAKVIGLTLTLGSGLPIGKEGPFVHIASIVAALLSKVTACQFGGFFENES 241 (931)
T ss_pred cCCChhHHHHHHhh-----hHHhhhhHHHHHHHHHHhhhhhccCCCcCCCCCchhHHHHHHHHHHHHHHhhccccccCcc
Confidence 89999988888654 56799999999999999999999999999999999999999999998743 6677
Q ss_pred HHHHHHHhhhHHHHHHhhhchHHHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHhhhcCC----c---cceecc
Q 007694 75 RKIALVAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGT----Q---SAFTVP 147 (593)
Q Consensus 75 ~~~~l~~~g~aagiaa~F~aPi~G~lf~~E~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----~---~~f~~~ 147 (593)
|+.+|+++|||.|||+.|.||+|||||++|+++++|.+++||. .|+|+.++++++|.+.-. . ..+...
T Consensus 242 R~~EmLaaaCAVGVactFsAPiGgVLfSIEvTS~yFAVrnYWR-----GFFAAtcsA~vFR~lavf~v~~~~tItA~yqT 316 (931)
T KOG0476|consen 242 RNMEMLAAACAVGVACTFSAPIGGVLFSIEVTSTYFAVRNYWR-----GFFAATCSAFVFRLLAVFFVEAEVTITALYQT 316 (931)
T ss_pred hHHHHHHHHhhhhheeeecCccceeEEEEEEeeeeeeHHHHHH-----HHHHHHhHHHHHHHHHHHcccchhhhHHHHhc
Confidence 8889999999999999999999999999999999999999874 899999999999976421 1 122222
Q ss_pred cc--C-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhcCCCcchHhhhhHHHHHHHHhhccccccc-
Q 007694 148 SY--D-LKSAAELPLYLILGMLCGVVSVVFTRLVAWFTKSF---DFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYW- 220 (593)
Q Consensus 148 ~~--~-~~~~~~l~~~~llGv~~Gl~g~~f~~~~~~~~~~~---~~~~~~~~~~~~~~~~iggl~~g~~~~~~p~~~~~- 220 (593)
.| + .+..+|+++|+++|++||++|++|+++.+.+.-+. +..++-+...+++.+++..++++. +.||.-+|.
T Consensus 317 ~F~~d~~F~~~ELp~FallGl~cGllGa~fVylhR~ivlf~Rkn~~~~~~f~k~~llyp~~~a~v~ss--ltfP~GlG~f 394 (931)
T KOG0476|consen 317 SFRPDFPFDVQELPFFALLGLLCGLLGALFVYLHRRIVLFLRKNRYAKKLFQKSRLLYPAFIALVFSS--LTFPPGLGQF 394 (931)
T ss_pred cCCCCCCCCHHHhHHHHHHHHHHhcccceeeeeeeeeeeeehhhHHHHHHHhhCccHHHHHHHHHHhh--eecCCccccc
Confidence 22 2 56789999999999999999999988755332111 111122233556778877777654 457765543
Q ss_pred --c----hhhHHHHHhcCC-----------------CCCcc----h-HHHHHHHHHHHHHHHHHhhccCCccceehHHHH
Q 007694 221 --G----FTNVEEILHTGK-----------------TASAP----G-IWLLTQLAAAKVVATALCKGSGLVGGLYAPSLM 272 (593)
Q Consensus 221 --g----~~~~~~~l~~~~-----------------~~~~~----~-~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~ 272 (593)
| .+++.+++.+.. .|..+ + +..|+++.++||++++++....+|+|.|+|+++
T Consensus 395 ~aG~l~f~etl~~fF~Nctw~~~~~~~~~~~~~~~~hW~~p~g~~~~f~tL~lf~l~~F~~siia~TipvPsG~FmPvFV 474 (931)
T KOG0476|consen 395 LAGRLSFRETLVDFFDNCTWWVQTNDSELCPAHILTHWYHPEGDVSIFGTLVLFFLMYFWMSIIATTIPVPSGVFMPVFV 474 (931)
T ss_pred ccccccHHhHHHHHhhcCeeeecCCCcCCCChhhhhhhcCCCCceeeHHHHHHHHHHHHHHHHHHhccccCccceeeeee
Confidence 2 133444544321 01111 1 345778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhCC--CCCCCcchHHHHHHHHHHHHHHhccchhHHHHHHHHHhCCchhHHHHHHHHHHHHH
Q 007694 273 IGAAVGAVFGGSAAEIINSAIP--GNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLMGAVGLAIW 350 (593)
Q Consensus 273 iGa~~G~~~g~~~~~~~~~~~p--~~~~~~~~~~~a~~G~aa~~a~~~~apls~~vi~~E~tg~~~~~~P~~ia~~ia~~ 350 (593)
+||++||++|+.+..+++.... +..+.+.|+.||++|||||.+++|| ++|.++|++|+|||...++|+|||+++|+.
T Consensus 475 iGAafGRlvGE~m~~lfP~Gi~~~gi~~~I~PG~YAVVGAAAfsGaVTH-TvSvAVIifElTGQl~hiLPVmIAVllaNA 553 (931)
T KOG0476|consen 475 IGAAFGRLVGEIMAVLFPEGIRGGGITPPIHPGGYAVVGAAAFSGAVTH-TVSVAVIIFELTGQLCHILPVMIAVLLANA 553 (931)
T ss_pred echhhhhhhhhhheeecccccccCCccCccccchhhhhhhhhhccceee-eeeEEEEEEeeccchHHHHHHHHHHHHHHH
Confidence 9999999999988777765543 3345789999999999999999999 799999999999999999999999999999
Q ss_pred HHHhhcccccccchhHHHhhccCCCCCCCccccchhhhccCCCCcccceecccccchhHHHHHHhhhhhhhhhhccCceE
Q 007694 351 VPSVANQAKETDASDKRTLARGYSSLSPMEDKNEVLWRRTDGADELELSVVENAADSEAAEEMLLEELKVSRAMSKDFVK 430 (593)
Q Consensus 351 v~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~i~v~~~M~~~~~~ 430 (593)
|++.+. .++||..++.++||++.. ..|.+ ....+++|.|+|.+|+.+
T Consensus 554 Va~~LQ----PSiYDSII~IKklPYLPD------lpps~-----------------------~~~h~v~VE~iMV~dv~y 600 (931)
T KOG0476|consen 554 VAASLQ----PSIYDSIIRIKKLPYLPD------LPPSR-----------------------SSVHTVKVEHIMVTDVKY 600 (931)
T ss_pred HHHHhC----cchhhheeeeccCCcCCC------CCCcc-----------------------cceeEEEeeeecccccee
Confidence 998874 367888899999998732 11211 234678899999999999
Q ss_pred ecCCCCHHHHHHHHHhcCCcEEEEEeCC--CeEEEEEeHHHHHHHHhh
Q 007694 431 VALTVTLKEAIESMKDGQQNCVLVVNGE--DFLEGILTYGDIKRCLSK 476 (593)
Q Consensus 431 v~~~~~v~~~~~~l~~~~~~~~pVvd~~--~~lvGiVt~~dL~~~l~~ 476 (593)
+..++|++|+.+.++.+..+.+|+||+. ..++|.|.+++|...+++
T Consensus 601 I~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~ 648 (931)
T KOG0476|consen 601 ITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQR 648 (931)
T ss_pred eeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHh
Confidence 9999999999999998889999999975 478999999999887654
No 5
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=100.00 E-value=9.6e-60 Score=503.34 Aligned_cols=360 Identities=23% Similarity=0.322 Sum_probs=301.4
Q ss_pred CCCChHHHHHHHHhcCCccccCcccccchhhHHHHHHHHHHHhcCCccCcchHHHHHHHHHHHHHHHhhc---CCHHHHH
Q 007694 1 MMHGLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMME---NNRERKI 77 (593)
Q Consensus 1 ~~~g~pev~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~sG~s~G~Egp~v~iga~~~~~~~~~~~---~~~~~~~ 77 (593)
.|||+||++++++.. ...++++.|+.+.|++++++++++|+|+|||||++|+|+++|++++|+++ .++++||
T Consensus 54 ~GsGIp~v~~~l~g~-----~~~~~~~~~~~~~k~l~~~l~i~~G~s~GrEGP~v~iGa~ia~~l~~~~~~~~~~~~~~r 128 (445)
T cd03684 54 AGSGIPEIKTILSGF-----IIRGFLGKWTLLIKSVGLVLAVASGLSLGKEGPLVHIATCVGNIISRLFPKYRRNEAKRR 128 (445)
T ss_pred cCCCHHHHHHHHcCc-----cccccccHHHHHHHHHhhHHhhccCCcCCCCCCcchHHHHHHHHHHHHHHHhccCHHHHH
Confidence 389999999999753 22356889999999999999999999999999999999999999999874 5667777
Q ss_pred HHHHhhhHHHHHHhhhchHHHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHhhhc----CCccceeccccCCCc
Q 007694 78 ALVAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLL----GTQSAFTVPSYDLKS 153 (593)
Q Consensus 78 ~l~~~g~aagiaa~F~aPi~G~lf~~E~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~f~~~~~~~~~ 153 (593)
++++||+|||++|+||||++|++|++||++++++.+.++ +++++|++|+++.+.+. ++...|.++....++
T Consensus 129 ~li~~GaaAGlaAaF~APi~G~lFalE~l~~~~~~~~l~-----~~~~as~~a~~v~~~~~~~~~~~~~~f~~~~~~~~~ 203 (445)
T cd03684 129 EILSAAAAAGVAVAFGAPIGGVLFSLEEVSYYFPLKTLW-----RSFFCALVAAFTLKSLNPFGTGRLVLFEVEYDRDWH 203 (445)
T ss_pred HHHHHHHhhhhHHhcCCccchhhhhhHhhhhhccHHHHH-----HHHHHHHHHHHHHHHhcccCCCCceEEeccCCCCcc
Confidence 899999999999999999999999999999888777644 47899999999988762 333445554334566
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchHhhhhHHHHHHHHhhcccccccchhhHHHHHhcCC
Q 007694 154 AAELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGK 233 (593)
Q Consensus 154 ~~~l~~~~llGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iggl~~g~~~~~~p~~~~~g~~~~~~~l~~~~ 233 (593)
..++++++++|++||++|.+|++.+.++++++++.+. ..++++++.+++++++++.++.|+..++|++.+++++.+..
T Consensus 204 ~~~l~~~i~lGi~~Gl~g~lf~~~~~~~~~~~~~~~~--~~~~~~~~~l~~l~~~~l~~~~p~~~~~g~~~i~~l~~~~~ 281 (445)
T cd03684 204 YFELIPFILLGIFGGLYGAFFIKANIKWARFRKKSLL--KRYPVLEVLLVALITALISFPNPYTRLDMTELLELLFNECE 281 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHhChHHHccchhhHHHHHHhcCC
Confidence 7899999999999999999999999999998876541 23457789999999999999999999999998888775421
Q ss_pred C--------------CCc--chHHHHHHHHHHHHHHHHHhhccCCccceehHHHHHHHHHHHHHHHHHHHHHhhhCCCC-
Q 007694 234 T--------------ASA--PGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGN- 296 (593)
Q Consensus 234 ~--------------~~~--~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~p~~- 296 (593)
. ... ...+.++.++++|+++|++|+|+|+|||+|.|++++||++|+++|.++..+. ..+|+.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~K~~~t~lt~gsG~~GG~f~P~l~iGA~~G~~~g~~~~~~~-~~~p~~~ 360 (445)
T cd03684 282 PGDDNSLCCYRDPPAGDGVYKALWSLLLALIIKLLLTIFTFGIKVPAGIFVPSMAVGALFGRIVGILVEQLA-YSYPDSI 360 (445)
T ss_pred CcccccccccccccCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcceeHHHHHHHHHHhHHHHHHHHHHH-hhCCccc
Confidence 0 000 1235566788999999999999999999999999999999999999886542 112321
Q ss_pred --------CCCcchHHHHHHHHHHHHHHhccchhHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccccccchhHHH
Q 007694 297 --------VAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLMGAVGLAIWVPSVANQAKETDASDKRT 368 (593)
Q Consensus 297 --------~~~~~~~~~a~~G~aa~~a~~~~apls~~vi~~E~tg~~~~~~P~~ia~~ia~~v~~~~~~~~~~~~~~~~~ 368 (593)
....+|+.|+++||+|++++++|+|+|++++++|+||++++++|+|+++++|+++++.+++ ++.|+..+
T Consensus 361 ~~~~~~~~~~~~~~~~~alvGmaa~~a~~~raPlt~ivlv~ElTg~~~~l~pl~ia~~iA~~vs~~~~~---~siY~~~l 437 (445)
T cd03684 361 FFACCTAGPSCITPGLYAMVGAAAFLGGVTRMTVSLVVIMFELTGALNYILPLMIAVMVSKWVADAIGK---EGIYDAHI 437 (445)
T ss_pred ccccccCCCCccCchHHHHHHHHHHhcchhccchhhhheeeeccCCcccHHHHHHHHHHHHHHHHHhCC---CCHHHHHH
Confidence 1135789999999999999999999999999999999999999999999999999999864 46788899
Q ss_pred hhccCCCC
Q 007694 369 LARGYSSL 376 (593)
Q Consensus 369 ~~~~y~~~ 376 (593)
+.+++|++
T Consensus 438 ~~~g~p~l 445 (445)
T cd03684 438 HLNGYPFL 445 (445)
T ss_pred HhcCCCCC
Confidence 99999864
No 6
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=100.00 E-value=8.2e-58 Score=484.18 Aligned_cols=327 Identities=24% Similarity=0.412 Sum_probs=284.0
Q ss_pred CCChHHHHHHHHhcCCccccCcccccchhhHHHHHHHHHHHhcCCccCcchHHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 007694 2 MHGLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIALVA 81 (593)
Q Consensus 2 ~~g~pev~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~sG~s~G~Egp~v~iga~~~~~~~~~~~~~~~~~~~l~~ 81 (593)
++|++|++++++.+ + .++.|+...|++++++++++|+|+|||||++|+|+++|++++|+++. +++||++++
T Consensus 79 ~~g~~~vi~av~~~-g-------~~~~~~~~~k~~~~~l~igsG~S~GrEGP~v~iGa~~g~~~~~~~~~-~~~~r~li~ 149 (418)
T PRK01610 79 PHAPTDYMEALQTD-G-------QFDYAASLVKSLASLLVVTSGSAIGREGAMILLAALAASCFAQRFTP-RQEWKLWIA 149 (418)
T ss_pred CCCcHHHHHHHHcC-C-------CCCccHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhCC-hHHHHHHHH
Confidence 68999999999762 2 25678899999999999999999999999999999999999999995 455568999
Q ss_pred hhhHHHHHHhhhchHHHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHhhhcCCc-cceeccccCCCccchHHHH
Q 007694 82 AGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQ-SAFTVPSYDLKSAAELPLY 160 (593)
Q Consensus 82 ~g~aagiaa~F~aPi~G~lf~~E~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~f~~~~~~~~~~~~l~~~ 160 (593)
||+|||+||+||||++|++|++|++.++++.+. ..+++++|++++.+++.+.+.. +.|+++....+++.+++++
T Consensus 150 ~GaaAGlaa~F~aPlaG~lFa~E~l~~~~~~~~-----~~p~~ias~~a~~v~~~~~g~~~~~~~i~~~~~~~~~~l~~~ 224 (418)
T PRK01610 150 CGAAAGMASAYHAPLAGSLFIAEILFGTLMLAS-----LGPVVISAVVALLTTNLLNGSDALLYNVQLSVTVQARDYALI 224 (418)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHhhHHH-----HHHHHHHHHHHHHHHHHHcCCCCCeeecCCcCCCCHHHHHHH
Confidence 999999999999999999999999987765544 3457899999999999988754 6688886666788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchHhhhhHHHHHHHHhhcccccccchhhHHHHHhcCCCCCcchH
Q 007694 161 LILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTASAPGI 240 (593)
Q Consensus 161 ~llGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iggl~~g~~~~~~p~~~~~g~~~~~~~l~~~~~~~~~~~ 240 (593)
+++|++||++|.+|++.+.+.++++++. +.++++++.++|+++|++.+++|+.+|+||+.++++++.. +..
T Consensus 225 i~lGii~Gl~g~~f~~~~~~~~~~~~~~----~~~~~~~~~lggli~g~l~~~~p~~~G~G~~~i~~~~~~~-----~~~ 295 (418)
T PRK01610 225 ISTGLLAGLCGPLLLTLMNASHRGFVSL----KLAPPWQLALGGLIVGLLSLFTPAVWGNGYSVVQSFLTAP-----PLL 295 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccc----ccchhHHHHHHHHHHHHHHHHhhHHhCCcHHHHHHHHcCC-----hhH
Confidence 9999999999999999999888776543 3456678999999999999999999999999988776432 234
Q ss_pred HHHHHHHHHHHHHHHHhhccCCccceehHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcchHHHHHHHHHHHHHHhccc
Q 007694 241 WLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSV 320 (593)
Q Consensus 241 ~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~p~~~~~~~~~~~a~~G~aa~~a~~~~a 320 (593)
..++.+++.|+++|++|+|+|++||.|.|++++||++|+.+|+.+..+ +|.. ...+..|+++||+|++++++|+
T Consensus 296 ~~l~~l~l~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~~~~~----~~~~--~~~~~~~a~vGmaA~laa~~~a 369 (418)
T PRK01610 296 MLIAGIFLCKLLAVLASSGSGAPGGVFTPTLFVGLAIGMLYGRSLGLW----LPDG--EEITLLLGLTGMATLLAATTHA 369 (418)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHh----CCCc--ccchHHHHHHHHHHHHHHHHcc
Confidence 556667899999999999999999999999999999999999887643 3431 2347899999999999999999
Q ss_pred hhHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcc
Q 007694 321 PLTSVLLLFELTRDYRILLPLMGAVGLAIWVPSVANQ 357 (593)
Q Consensus 321 pls~~vi~~E~tg~~~~~~P~~ia~~ia~~v~~~~~~ 357 (593)
|+|++++++|+||+++.++|+|+++++|+++++.+.+
T Consensus 370 Pltaivl~~Eltg~~~~~~p~~ia~~ia~~vs~~~~~ 406 (418)
T PRK01610 370 PIMSTLMICEMTGEYQLLPGLLIACVIASVISRTLRR 406 (418)
T ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999988743
No 7
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=100.00 E-value=3e-58 Score=480.45 Aligned_cols=332 Identities=37% Similarity=0.631 Sum_probs=277.0
Q ss_pred CCChHHHHHHHHhcCCccccCcccccchhhHHHHHHHHHHHhcCCccCcchHHHHHHHHHHHHHHHhhcC-CHHHHHHHH
Q 007694 2 MHGLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMEN-NRERKIALV 80 (593)
Q Consensus 2 ~~g~pev~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~sG~s~G~Egp~v~iga~~~~~~~~~~~~-~~~~~~~l~ 80 (593)
|+|+||++++++..+. .++.|+.+.|++++++++++|+|+|||||++|+|++++++++|+++. +++++|.++
T Consensus 19 g~Gi~~v~~~~~~~~~-------~~~~~~~~~k~~~~~~s~~~G~s~G~EGp~v~iga~i~~~~~~~~~~~~~~~~r~l~ 91 (355)
T PF00654_consen 19 GSGIPEVKAALRGKSG-------RLPFRTLPVKFVGSILSLGSGLSVGREGPSVQIGAAIGSWLGRRFRLSRNETRRLLL 91 (355)
T ss_dssp B-SHHHHHHHCTTSS----------HHHHHHHHHHHHHHHHHTT-S-BSHHHHHHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred CCCHHHHHHHHhCCCC-------CCCHHHHHHHHHHHHHHHhcCCCCcCccHHHHHHHHHHHHHHHhhcccchHHHhHHH
Confidence 7999999999976632 26889999999999999999999999999999999999999999984 455355699
Q ss_pred HhhhHHHHHHhhhchHHHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHhhhcCCcccee-ccccCCCccchHHH
Q 007694 81 AAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFT-VPSYDLKSAAELPL 159 (593)
Q Consensus 81 ~~g~aagiaa~F~aPi~G~lf~~E~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~f~-~~~~~~~~~~~l~~ 159 (593)
+||+|||+|++||||++|++|++|++.++++.+.+ ++++++|++++++++.+.++.+.|. ++....++++++++
T Consensus 92 ~~g~aAglaa~F~aPlaG~lFalE~~~~~~~~~~~-----~~~~~as~~a~~v~~~~~~~~~~f~~~~~~~~~~~~~~~~ 166 (355)
T PF00654_consen 92 AAGAAAGLAAAFNAPLAGVLFALEELSRDFSVRLL-----LPALVASIVATLVSRLLFGNHPIFGSVPQLFPFSLWELPL 166 (355)
T ss_dssp HHHHHHHHHHHHT-HHHHHHHHHCCTCHCCSTTTH-----HHHHHHHHHHHHHHHHHHTSS-SS---TT-----GGGHHH
T ss_pred HHHHHHHHHHHhcCCcccceehhheeeccccchhh-----HHHHHHHHHHHHHHHHHcCcCcccccccccccCCHHHHHH
Confidence 99999999999999999999999998888877654 3489999999999999999999998 77666788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchHhhhhHHHHHHHHhhccc--ccccchhhHHHHHhcCCCCCc
Q 007694 160 YLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPG--ILYWGFTNVEEILHTGKTASA 237 (593)
Q Consensus 160 ~~llGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iggl~~g~~~~~~p~--~~~~g~~~~~~~l~~~~~~~~ 237 (593)
++++|++||++|.+|++++.++++++++.+ +++.++++++.++|++++++.+++|+ .+++|++.+++++++... .
T Consensus 167 ~~llGi~~Gl~g~~f~~~~~~~~~~~~~~~-~~~~~~~l~~~i~gl~~g~l~~~~p~~~~~g~G~~~i~~ll~~~~~--~ 243 (355)
T PF00654_consen 167 FLLLGIICGLLGALFNRLLRWLRKFFRKLK-RLKIPPILRPVIGGLVIGLLAFFFPEGSVLGSGYELIQSLLSGSPP--W 243 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHSSGG-SGSSSSTTHHHHHCTT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccchHHHHHHHHHHHHHHHHHHhhhcccCCcHHHHHHHHcCCcc--h
Confidence 999999999999999999999999988876 44445567999999999999999999 999999999998865321 2
Q ss_pred chHHHHHHHHHHHHHHHHHhhccCCccceehHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcchHHHHHHHHHHHHHHh
Q 007694 238 PGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASV 317 (593)
Q Consensus 238 ~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~p~~~~~~~~~~~a~~G~aa~~a~~ 317 (593)
...+.++.+.+.|+++|.+|+++|++||.|.|++++|+++|++++.+++..+ |+... .++..|+++||+|+++++
T Consensus 244 ~~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~~~~~~~~~----~~~~~-~~~~~~al~G~~a~~~a~ 318 (355)
T PF00654_consen 244 FSLGSLLLLFLLKFLATALTLGSGAPGGIFFPSLFIGAALGRLFGALLGSFF----PGISS-VDPGVYALVGMAAFLAAV 318 (355)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHTT-BSBSHHHHHHHHHHHHHHHHHHHHHH-----GGG-T--SHHHHHHHHTTHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhcCccCCCCEEccHHHHHHHHHHHHHHHHHhhC----CCcCC-CchHHHHHHHHHHHHHHH
Confidence 3467788899999999999999999999999999999999999998886643 33211 379999999999999999
Q ss_pred ccchhHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Q 007694 318 CSVPLTSVLLLFELTRDYRILLPLMGAVGLAIWVPS 353 (593)
Q Consensus 318 ~~apls~~vi~~E~tg~~~~~~P~~ia~~ia~~v~~ 353 (593)
+|+|++++++++|+||++++++|+|+++++|+++++
T Consensus 319 ~~~Plt~~vl~~Eltg~~~~~~p~lia~~~a~~v~~ 354 (355)
T PF00654_consen 319 TRAPLTAIVLVLELTGDFQLLLPLLIAVAVAYLVAR 354 (355)
T ss_dssp CS-HHHHHHHHHHHH--GGGHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999975
No 8
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=1.1e-57 Score=480.20 Aligned_cols=324 Identities=31% Similarity=0.396 Sum_probs=285.4
Q ss_pred CCCChHHHHHHHHhcCCccccCcccccchhhHHHHHHHHHHHhcCCccCcchHHHHHHHHHHHHHHHhhcCCHHHHHHHH
Q 007694 1 MMHGLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIALV 80 (593)
Q Consensus 1 ~~~g~pev~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~sG~s~G~Egp~v~iga~~~~~~~~~~~~~~~~~~~l~ 80 (593)
.|+|+||+++++++++ .+++++.+.|.+++++++++|+|+|||||++|+|++++++++|+++.++++||+++
T Consensus 63 ~g~gi~~v~~~~~~~~--------~~~~~~~~~k~~~~~l~ig~G~s~G~EGP~v~iGa~i~~~~~~~~~~~~~~~r~li 134 (388)
T cd01033 63 KGKKLVSIKQAVRGKK--------RMPFWETIIHAVLQIVTVGLGAPLGREVAPREVGALLAQRFSDWLGLTVADRRLLV 134 (388)
T ss_pred cCCCcccHHHHhcCCC--------CCCHHHHHHHHHHHHhhhhcCCCcCcccHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 3899999999996542 25678888999999999999999999999999999999999999999888888999
Q ss_pred HhhhHHHHHHhhhchHHHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHhhhcCCccceeccccCCCccchHHHH
Q 007694 81 AAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLY 160 (593)
Q Consensus 81 ~~g~aagiaa~F~aPi~G~lf~~E~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~ 160 (593)
+||+|||+||+||||++|++|++|+++++++.+.+ .+++++|++++++++.+.++.+.|.++..+. ++.+++++
T Consensus 135 ~~GaaAGlaa~F~aPlaG~lFalE~~~~~~~~~~~-----~~~~~as~~a~~v~~~~~g~~~~f~~~~~~~-~~~~l~~~ 208 (388)
T cd01033 135 ACAAGAGLAAVYNVPLAGALFALEILLRTISLRSV-----VAALATSAIAAAVASLLKGDHPIYDIPPMQL-STPLLIWA 208 (388)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHhccHHHH-----HHHHHHHHHHHHHHHHhCCCCceeecCCCCC-CHHHHHHH
Confidence 99999999999999999999999999987766543 3578999999999999999999999886553 47789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchHhhhhHHHHHHHHhhcccccccchhhHHHHHhcCCCCCcchH
Q 007694 161 LILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTASAPGI 240 (593)
Q Consensus 161 ~llGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iggl~~g~~~~~~p~~~~~g~~~~~~~l~~~~~~~~~~~ 240 (593)
+++|+++|+++.+|++.+.++++++++ ..+.++++.++|+++|++.+++|+.+|+|++.++.++++.. ..
T Consensus 209 illGi~~Gl~~~lf~~~~~~~~~~~~~-----~~~~~~~~~l~gl~~g~~~~~~p~~~G~G~~~i~~~~~~~~-----~~ 278 (388)
T cd01033 209 LLAGPVLGVVAAGFRRLSQAARAKRPK-----GKRILWQMPLAFLVIGLLSIFFPQILGNGRALAQLAFSTTL-----TL 278 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-----ccchHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHcCCc-----hH
Confidence 999999999999999999998876632 12345678899999999999999999999999988886432 24
Q ss_pred HHHHHHHHHHHHHHHHhhccCCccceehHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcchHHHHHHHHHHHHHHhccc
Q 007694 241 WLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSV 320 (593)
Q Consensus 241 ~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~p~~~~~~~~~~~a~~G~aa~~a~~~~a 320 (593)
+.++.+++.|+++|++|+|+|+|||+|.|++++||++|+.+|+.++.. +|+ .++..|++|||+|++++++|+
T Consensus 279 ~~ll~~~~~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~~~~~----~p~----~~~~~~a~~GmaA~laa~~~a 350 (388)
T cd01033 279 SLLLILLVLKIVATLLALRAGAYGGLLTPSLALGALLGALLGIVWNAL----LPP----LSIAAFALIGAAAFLAATQKA 350 (388)
T ss_pred HHHHHHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHHHHHHh----CCc----ccHHHHHHHHHHHHHHHHHhh
Confidence 556778899999999999999999999999999999999999877543 232 468899999999999999999
Q ss_pred hhHHHHHHHHHhC-CchhHHHHHHHHHHHHHHHHhhc
Q 007694 321 PLTSVLLLFELTR-DYRILLPLMGAVGLAIWVPSVAN 356 (593)
Q Consensus 321 pls~~vi~~E~tg-~~~~~~P~~ia~~ia~~v~~~~~ 356 (593)
|+|++++++|+|| +++.++|+|+++++|+.+++.+.
T Consensus 351 Plt~ivl~~Eltg~~~~~l~Pl~ia~~~a~~vs~~~~ 387 (388)
T cd01033 351 PLTALILVLEFTRQNPLFLIPLMLAVAGAVAVSRFIL 387 (388)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999 99999999999999999987763
No 9
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=1.2e-56 Score=473.74 Aligned_cols=330 Identities=30% Similarity=0.413 Sum_probs=283.3
Q ss_pred CCChHHHHHHHHhcCCccccCcccccchhhHHHHHHHHHHHhcCCccCcchHHHHHHHHHHHHHHHhhcCC-HHHHHHHH
Q 007694 2 MHGLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENN-RERKIALV 80 (593)
Q Consensus 2 ~~g~pev~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~sG~s~G~Egp~v~iga~~~~~~~~~~~~~-~~~~~~l~ 80 (593)
|+|+||++++++.+.+. +..++++.|+.+.|++++++++++|+|+|||||++|+|++++++++|+++.. +++|++++
T Consensus 53 gsGi~~v~~~~~~~~~~--~~~~~~~~r~~~~k~i~~~l~i~~G~s~GrEGP~v~iga~i~~~~~~~~~~~~~~~~r~li 130 (390)
T cd01034 53 GSGIPQVIAALELPSAA--ARRRLLSLRTAVGKILLTLLGLLGGASVGREGPSVQIGAAVMLAIGRRLPKWGGLSERGLI 130 (390)
T ss_pred CCCHHHHHHHHcccccc--cccccccHHHHHHHHHHHHHHHHcCCCcCCcccHHHHHHHHHHHHHHHcccCchHHHHHHH
Confidence 89999999999876543 2345788999999999999999999999999999999999999999999874 56666899
Q ss_pred HhhhHHHHHHhhhchHHHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHhhhcCCccceeccccCCCccchHHHH
Q 007694 81 AAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLY 160 (593)
Q Consensus 81 ~~g~aagiaa~F~aPi~G~lf~~E~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~ 160 (593)
+||+|||+||+||||++|++|++|+++++++.+.. +++++++++++++.+.++++.+.|.++..+..++.+++++
T Consensus 131 ~~GaaAGlaa~F~aPlaG~lF~~E~~~~~~~~~~~-----~~~~~~~~~a~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~ 205 (390)
T cd01034 131 LAGGAAGLAAAFNTPLAGIVFAIEELSRDFELRFS-----GLVLLAVIAAGLVSLAVLGNYPYFGVAAVALPLGEAWLLV 205 (390)
T ss_pred HHHHHHhHHHHhCCcchhHHHHHHHhhhhhhHHHH-----HHHHHHHHHHHHHHHHHcCCCCccCCCCCCcCCHHHHHHH
Confidence 99999999999999999999999999987665543 3467788888888898899999998886665677889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCcchHhhhhHHHHHHHHhhcc-cccccchhhHHHHHhcCCCCCcc
Q 007694 161 LILGMLCGVVSVVFTRLVAWFTKSFDFIKEKF-GLPPVVCPALGGLGAGIIALRYP-GILYWGFTNVEEILHTGKTASAP 238 (593)
Q Consensus 161 ~llGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~-~~~~~~~~~iggl~~g~~~~~~p-~~~~~g~~~~~~~l~~~~~~~~~ 238 (593)
+++|++||++|.+|++.+.++++++++.+++. ..++++.+.++|++++++.+++| +..|+|++.+++++++... .
T Consensus 206 illGii~G~~g~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~G~G~~~i~~~~~~~~~---~ 282 (390)
T cd01034 206 LVCGVVGGLAGGLFARLLVALSSGLPGWVRRFRRRRPVLFAALCGLALALIGLVSGGLTFGTGYLQARAALEGGGG---L 282 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHhCCCccccCcHHHHHHHHhCCCc---c
Confidence 99999999999999999999988877654322 23445677788888888888776 6788999999988764321 1
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCCccceehHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcchHHHHHHHHHHHHHHhc
Q 007694 239 GIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVC 318 (593)
Q Consensus 239 ~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~p~~~~~~~~~~~a~~G~aa~~a~~~ 318 (593)
...+.++|+++|.+|+|+|+|||+|+|++++||++|++++++++ ..++..|+++||+|++++++
T Consensus 283 ----~~~~~l~K~i~t~lt~gsG~~gG~f~P~l~iGa~~G~~~~~~~~------------~~~~~~~a~~G~aA~laa~~ 346 (390)
T cd01034 283 ----PLWFGLLKFLATLLSYWSGIPGGLFAPSLAVGAGLGSLLAALLG------------SVSQGALVLLGMAAFLAGVT 346 (390)
T ss_pred ----cHHHHHHHHHHHHHHHHcCCCcceechHHHHHHHHHHHHHHHhc------------CCCchHHHHHHHHHHHHHHH
Confidence 12356799999999999999999999999999999999987542 13789999999999999999
Q ss_pred cchhHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcc
Q 007694 319 SVPLTSVLLLFELTRDYRILLPLMGAVGLAIWVPSVANQ 357 (593)
Q Consensus 319 ~apls~~vi~~E~tg~~~~~~P~~ia~~ia~~v~~~~~~ 357 (593)
|+|+|++++++|+||++++++|+|+++++|+++++.+++
T Consensus 347 ~aPlt~~vl~~Elt~~~~~l~p~lia~~~A~~v~~~~~~ 385 (390)
T cd01034 347 QAPLTAFVIVMEMTGDQQMLLPLLAAALLASGVSRLVCP 385 (390)
T ss_pred cccHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999988853
No 10
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-55 Score=468.73 Aligned_cols=341 Identities=34% Similarity=0.557 Sum_probs=294.4
Q ss_pred CCChHHHHHHHHhcCCccccCcccccchhhHHHHHHHHHHHhcCCccCcchHHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 007694 2 MHGLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIALVA 81 (593)
Q Consensus 2 ~~g~pev~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~sG~s~G~Egp~v~iga~~~~~~~~~~~~~~~~~~~l~~ 81 (593)
|||+||++++++..++ .+++|...+|.+++.++++||+|+|||||+||+|+++|+.++|+++.++++||.+++
T Consensus 91 g~Gi~~~i~a~~~~~~-------~~~~~~~~vk~~~~~l~i~sG~s~GrEGP~vqiga~~g~~~~~~l~~~~~~~r~Ll~ 163 (443)
T COG0038 91 GSGIPQAIEALHGRKG-------RISPRVLPVKLVATLLTIGSGASLGREGPSVQIGAAIGSLLGRLLKLSREDRRILLA 163 (443)
T ss_pred CCChhHHHHHHhcCCC-------cccHHHHHHHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 7999999999977532 257889999999999999999999999999999999999999999998888889999
Q ss_pred hhhHHHHHHhhhchHHHHHHHHHhcccc-cccccCChhHHHHHHHHHHHHHHHHhhhcCCccceeccccCCCccchHHHH
Q 007694 82 AGAASGIASGFNAAVAGCFFAIETVLRP-LRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLY 160 (593)
Q Consensus 82 ~g~aagiaa~F~aPi~G~lf~~E~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~ 160 (593)
||+|||+||+||||++|++|++|++++. +..++ ..+++++|++++.+.+.+.+..+.+..++++.++.++++.+
T Consensus 164 ~GaAaGlaaaF~aPlagvlF~~E~l~~~~~~~~~-----l~p~~vaa~va~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (443)
T COG0038 164 AGAAAGLAAAFNAPLAGALFAIEVLYGRFLEYRA-----LVPVLVAAVVALLVAGLFGGPHFLLPIVTTPHMSLWDLLLY 238 (443)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHhhcccHHH-----HHHHHHHHHHHHHHHHHcCCCCceeeccccCcCCHHHHHHH
Confidence 9999999999999999999999999976 44443 45588999999999999998777888877777788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchHhhhhHHHHHHHHhhcccccccchhhHHHHHhcCCCCCcchH
Q 007694 161 LILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTASAPGI 240 (593)
Q Consensus 161 ~llGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iggl~~g~~~~~~p~~~~~g~~~~~~~l~~~~~~~~~~~ 240 (593)
+++|+++|++|.+|.+.+..++++++ +.+.+++++++++|+++|.+.+++|+.+++|+..++...+... .
T Consensus 239 ~~lGii~G~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~l~g~~~l~~P~~lg~G~~~~~~~~~~~~------~ 308 (443)
T COG0038 239 LVLGIIAGLFGVLLSRLLALSRRFFR----RLPLPPLLRPALGGLLVGALGLLFPEVLGNGYGLIQLALAGEG------G 308 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----cCcchHHHHHHHHHHHHHHHHHhchhhhCCCccHHHHHHccCc------c
Confidence 99999999999999999877755543 4456678899999999999999999999999999887775432 1
Q ss_pred HH-HHHHHHHHHHHHHHhhccCCccceehHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcchHHHHHHHHHHHHHHhcc
Q 007694 241 WL-LTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCS 319 (593)
Q Consensus 241 ~~-l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~p~~~~~~~~~~~a~~G~aa~~a~~~~ 319 (593)
+. ++.+++.|+++|++|+|||+|||+|.|++++|+++|..++..+... +|. +...+..|+++||++++++++|
T Consensus 309 ~~~l~~l~~~K~l~t~~s~gSG~~GGif~Psl~iGa~lG~~~g~~~~~~----~~~--~~~~~~~~al~Gm~a~la~~~~ 382 (443)
T COG0038 309 LLVLLLLFLLKLLATLLSYGSGAPGGIFAPSLFIGAALGLAFGALLGLL----FPP--SILEPGLFALLGMAAFLAATTR 382 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcceehHHHHHHHHHHHHHHHHHHhh----cCc--cccchHHHHHHHHHHHHHHHhc
Confidence 33 6678899999999999999999999999999999999999877653 333 1346789999999999999999
Q ss_pred chhHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccccccchhHHHhhccC
Q 007694 320 VPLTSVLLLFELTRDYRILLPLMGAVGLAIWVPSVANQAKETDASDKRTLARGY 373 (593)
Q Consensus 320 apls~~vi~~E~tg~~~~~~P~~ia~~ia~~v~~~~~~~~~~~~~~~~~~~~~y 373 (593)
+|+|++++++||||+++.++|+|+++++++++++.... +.+|+.....++.
T Consensus 383 aPlta~vlv~EmTg~~~~~l~ll~a~~ia~~~~~~~~~---~~~~~~~~~~~~~ 433 (443)
T COG0038 383 APLTAIVLVLEMTGNYQLLLPLLIACLIAYLVSRLLGG---RPIYTQLLARRGA 433 (443)
T ss_pred ccHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhCC---CcHHHHHHHhcCc
Confidence 99999999999999999999999999999999988743 3344444444433
No 11
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=100.00 E-value=4.1e-55 Score=464.74 Aligned_cols=331 Identities=29% Similarity=0.450 Sum_probs=291.6
Q ss_pred CCCChHHHHHHHHhcCCccccCcccccchhhHHHHHHHHHHHhcCCccCcchHHHHHHHHHHHHHHHhhcCCHHHHHHHH
Q 007694 1 MMHGLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIALV 80 (593)
Q Consensus 1 ~~~g~pev~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~sG~s~G~Egp~v~iga~~~~~~~~~~~~~~~~~~~l~ 80 (593)
.|+|+||++++++... ++...++.+.|++++++++++|+|+|||||++|+|+++|++++++++.+++++++++
T Consensus 63 ~g~G~~~v~~~l~~~~-------~~~~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iga~ig~~~~~~~~~~~~~~~~l~ 135 (402)
T cd01031 63 KGSGIPQVEGVLAGLL-------PPNWWRVLPVKFVGGVLALGSGLSLGREGPSVQIGAAIGQGVSKWFKTSPEERRQLI 135 (402)
T ss_pred CCCCHHHHHHHHcCCC-------CcccHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3789999999996542 134678999999999999999999999999999999999999999988877777899
Q ss_pred HhhhHHHHHHhhhchHHHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHhhhcCCccceeccccCCCccchHHHH
Q 007694 81 AAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLY 160 (593)
Q Consensus 81 ~~g~aagiaa~F~aPi~G~lf~~E~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~ 160 (593)
+||+|||++++||||++|++|++|++.++++.+.+ +++++++++++++.+.+.++.+.|.++.++.+++.+++++
T Consensus 136 ~~g~aag~aa~f~aPl~g~lf~~E~~~~~~~~~~~-----~~~~~a~~~a~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~ 210 (402)
T cd01031 136 AAGAAAGLAAAFNAPLAGVLFVLEELRHSFSPLAL-----LTALVASIAADFVSRLFFGLGPVLSIPPLPALPLKSYWLL 210 (402)
T ss_pred HHHHHHhHHHHhCCccHHHHHHHHHHHhhCCHHHH-----HHHHHHHHHHHHHHHHHcCCCceEecCCCCCCCHHHHHHH
Confidence 99999999999999999999999999877654433 4578999999999999999999999887777888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchHhhhhHHHHHHHHhhcccccccchhhHHHHHhcCCCCCcchH
Q 007694 161 LILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTASAPGI 240 (593)
Q Consensus 161 ~llGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iggl~~g~~~~~~p~~~~~g~~~~~~~l~~~~~~~~~~~ 240 (593)
+++|++||++|.+|++.+.+.++++++.+ +.++++++.++|++++++.+++|+.+|+|++.++++.++. ...
T Consensus 211 illGv~~G~~g~~f~~~~~~~~~~~~~~~---~~~~~~~~~l~gl~~~~~~~~~p~~~g~G~~~i~~~~~~~-----~~~ 282 (402)
T cd01031 211 LLLGIIAGLLGYLFNRSLLKSQDLYRKLK---KLPRELRVLLPGLLIGPLGLLLPEALGGGHGLILSLAGGN-----FSI 282 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCChhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHcCC-----chH
Confidence 99999999999999999999988876542 3456778999999999999999999999998887776432 234
Q ss_pred HHHHHHHHHHHHHHHHhhccCCccceehHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcchHHHHHHHHHHHHHHhccc
Q 007694 241 WLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSV 320 (593)
Q Consensus 241 ~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~p~~~~~~~~~~~a~~G~aa~~a~~~~a 320 (593)
..++.+++.|+++|++|+++|++||.|.|++++||++|+.+|++++.++ |. ...+++.|+++||+|++++++|+
T Consensus 283 ~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~g~~~~~~~----~~--~~~~~~~~a~~G~aa~~a~~~~a 356 (402)
T cd01031 283 SLLLLIFVLRFIFTMLSYGSGAPGGIFAPMLALGALLGLLFGTILVQLG----PI--PISAPATFAIAGMAAFFAAVVRA 356 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhc----Cc--ccccHHHHHHHHHHHHHHHHHhh
Confidence 5566788999999999999999999999999999999999999886543 32 23689999999999999999999
Q ss_pred hhHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcc
Q 007694 321 PLTSVLLLFELTRDYRILLPLMGAVGLAIWVPSVANQ 357 (593)
Q Consensus 321 pls~~vi~~E~tg~~~~~~P~~ia~~ia~~v~~~~~~ 357 (593)
|++++++++|+||++++++|+|+++++|+++++.+.+
T Consensus 357 Plta~vl~~Eltg~~~~l~p~~ia~~ia~~v~~~~~~ 393 (402)
T cd01031 357 PITAIILVTEMTGNFNLLLPLMVVCLVAYLVADLLGG 393 (402)
T ss_pred hHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999998853
No 12
>PRK05277 chloride channel protein; Provisional
Probab=100.00 E-value=1.5e-54 Score=464.70 Aligned_cols=344 Identities=28% Similarity=0.417 Sum_probs=288.0
Q ss_pred CCCChHHHHHHHHhcCCccccCcccccchhhHHHHHHHHHHHhcCCccCcchHHHHHHHHHHHHHHHhhcC-CHHHHHHH
Q 007694 1 MMHGLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMEN-NRERKIAL 79 (593)
Q Consensus 1 ~~~g~pev~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~sG~s~G~Egp~v~iga~~~~~~~~~~~~-~~~~~~~l 79 (593)
.|+|+||++.+++... +.+ ..++...|++++++++++|+|+|||||++|+|+++|++++++++. ++++++++
T Consensus 70 ~GsGi~~i~~~l~~~~-----~~~--~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iGa~ig~~~~~~~~~~~~~~~~~l 142 (438)
T PRK05277 70 GGSGIPEIEGALEGLR-----PVR--WWRVLPVKFFGGLGTLGSGMVLGREGPTVQMGGNIGRMVLDIFRLRSDEARHTL 142 (438)
T ss_pred CCCCHHHHHHHHcCCC-----ccc--hHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHHcccCCHHHHHHH
Confidence 3899999999996432 121 246788999999999999999999999999999999999999987 77777789
Q ss_pred HHhhhHHHHHHhhhchHHHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHhhhcCCccceeccccCCCccchHHH
Q 007694 80 VAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPL 159 (593)
Q Consensus 80 ~~~g~aagiaa~F~aPi~G~lf~~E~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~ 159 (593)
++||+|||++++||||++|++|++|++.++++... -...++++++++++.+.+.+.++.+.|.++.++.+++.+++.
T Consensus 143 i~~G~aaglaa~f~APl~g~lf~~E~~~~~~~~~~---~~~~~~~~a~~~a~~v~~~~~g~~~~~~~~~~~~~~~~~l~~ 219 (438)
T PRK05277 143 LAAGAAAGLAAAFNAPLAGILFVIEEMRPQFRYSL---ISIKAVFIGVIMATIVFRLFNGEQAVIEVGKFSAPPLNTLWL 219 (438)
T ss_pred HHHHHHHhHHHhcCCchHHHHHHHHHHHhhccccH---HHHHHHHHHHHHHHHHHHHhcCCCceEeccCCCCCCHHHHHH
Confidence 99999999999999999999999999876432211 112347889999999999999988899888777677889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchHhhhhHHHHHHHHhhcccccccchhhHHHHHhcCCCCCcch
Q 007694 160 YLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTASAPG 239 (593)
Q Consensus 160 ~~llGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iggl~~g~~~~~~p~~~~~g~~~~~~~l~~~~~~~~~~ 239 (593)
++++|++||++|.+|++.+.+++++++++++....++++...++|+++|++.+++|+..|+|++.+++.+++. ..
T Consensus 220 ~i~lGi~~G~~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gl~~g~l~~~~p~~~g~G~~~i~~~~~~~-----~~ 294 (438)
T PRK05277 220 FLLLGIIFGIFGVLFNKLLLRTQDLFDRLHGGNKKRWVLMGGAVGGLCGLLGLLAPAAVGGGFNLIPIALAGN-----FS 294 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHhhhhcCChHHHHHHHHcCC-----ch
Confidence 9999999999999999999999988766532211222234567788889988999999999999998887542 22
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCccceehHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcchHHHHHHHHHHHHHHhcc
Q 007694 240 IWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCS 319 (593)
Q Consensus 240 ~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~p~~~~~~~~~~~a~~G~aa~~a~~~~ 319 (593)
...++.++++|+++|++|+|+|++||+|.|++++||++|+.+|++++.+ +|. ...++..|+++||+|++++++|
T Consensus 295 ~~~l~~~~~~K~i~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~~~~~----~p~--~~~~~~~~a~~G~aA~la~~~~ 368 (438)
T PRK05277 295 IGMLLFIFVARFITTLLCFGSGAPGGIFAPMLALGTLLGLAFGMVAAAL----FPQ--YHIEPGTFAIAGMGALFAATVR 368 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH----cCc--ccccHHHHHHHHHHHHHHHHHH
Confidence 4456678899999999999999999999999999999999999887654 343 2357899999999999999999
Q ss_pred chhHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccccccchhHHH
Q 007694 320 VPLTSVLLLFELTRDYRILLPLMGAVGLAIWVPSVANQAKETDASDKRT 368 (593)
Q Consensus 320 apls~~vi~~E~tg~~~~~~P~~ia~~ia~~v~~~~~~~~~~~~~~~~~ 368 (593)
+|+|++++++|+||+++.++|+|+++++|+++++.+.+ +..|+..+
T Consensus 369 aPlt~~v~~~Eltg~~~~l~p~lia~~~A~~v~~~~~~---~~iy~~~l 414 (438)
T PRK05277 369 APLTGIVLVLEMTDNYQLILPLIITCLGATLLAQFLGG---KPIYSALL 414 (438)
T ss_pred hHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHhCC---CChHHHHH
Confidence 99999999999999999999999999999999998853 34455443
No 13
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=100.00 E-value=2.2e-55 Score=466.75 Aligned_cols=319 Identities=26% Similarity=0.332 Sum_probs=266.2
Q ss_pred CCCChHHHHHHHHhcCCccccCcccccchhhHHHHHHHHHHHhcCCccCcchHHHHHHHHHHHHHHHhhc----------
Q 007694 1 MMHGLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMME---------- 70 (593)
Q Consensus 1 ~~~g~pev~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~sG~s~G~Egp~v~iga~~~~~~~~~~~---------- 70 (593)
.|+|+||++++++.. +..++++.|+.+.|++++++++++|+|+|||||++|+|+++|++++++++
T Consensus 63 ~GsGIp~v~~~l~g~-----~~~~~l~~~~~~~K~i~~~l~igsG~svGrEGP~V~iGa~ig~~l~~~~~~~~~~~~~~~ 137 (416)
T cd01036 63 AGSGIPEVMAYLNGV-----HLPMYLSIRTLIAKTISCICAVASGLPLGKEGPLVHLGAMIGAGLLQGRSRTLGCHVHLF 137 (416)
T ss_pred CCCCHHHHHHHHcCC-----cccccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcccccccccchh
Confidence 389999999999753 23457899999999999999999999999999999999999999999654
Q ss_pred ---CCHHHHHHHHHhhhHHHHHHhhhchHHHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHhhhcCCccce---
Q 007694 71 ---NNRERKIALVAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAF--- 144 (593)
Q Consensus 71 ---~~~~~~~~l~~~g~aagiaa~F~aPi~G~lf~~E~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~f--- 144 (593)
.++++|+++++||+|||+||+||||++|++|++|+++++++.+..+ +++++|++++++++.+.+..+.+
T Consensus 138 ~~~~~~~~~r~ll~aGaaAGlaAaF~APiaGvlFalE~~~~~~~~~~~~-----~~~~as~~a~~v~~~~~~~~~~~~~~ 212 (416)
T cd01036 138 QLFRNPRDRRDFLVAGAAAGVASAFGAPIGGLLFVLEEVSTFFPVRLAW-----RVFFAALVSAFVIQIYNSFNSGFELL 212 (416)
T ss_pred hhccCHHHHHHHHHHHhhcchhhccCCcceeeeeeeHHhhccccHHHHH-----HHHHHHHHHHHHHHHhccccCCcccc
Confidence 3556667899999999999999999999999999999888776543 47889999999988876654332
Q ss_pred -----------eccccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCcchHhhhhHHHHHHHHh
Q 007694 145 -----------TVPSYDLKSAAELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEK-FGLPPVVCPALGGLGAGIIAL 212 (593)
Q Consensus 145 -----------~~~~~~~~~~~~l~~~~llGv~~Gl~g~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~iggl~~g~~~~ 212 (593)
.++....++.+++++++++|++||++|.+|++.+.++.+++++.++. .+.++++++.+++++++++.+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~l~~~illGv~~G~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 292 (416)
T cd01036 213 DRSSAMFLSLTVFELHVPLNLYEFIPTVVIGVICGLLAALFVRLSIIFLRWRRRLLFRKTARYRVLEPVLFTLIYSTIHY 292 (416)
T ss_pred ccccccceeccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHH
Confidence 12222345678999999999999999999999999999888765432 234557788888888887654
Q ss_pred hcccccccchhhHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHhhccCCccceehHHHHHHHHHHHHHHHHHHHHHhhh
Q 007694 213 RYPGILYWGFTNVEEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSA 292 (593)
Q Consensus 213 ~~p~~~~~g~~~~~~~l~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~ 292 (593)
...++.+++.|+++|++|+|+|+|||+|.|++++||++|+++|+++..+++..
T Consensus 293 ---------------------------~~~l~~~~~~K~~~t~~t~~sg~pGG~f~Psl~iGA~~G~~~g~~~~~~~~~~ 345 (416)
T cd01036 293 ---------------------------APTLLLFLLIYFWMSALAFGIAVPGGTFIPSLVIGAAIGRLVGLLVHRIAVAG 345 (416)
T ss_pred ---------------------------HHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 23455678899999999999999999999999999999999999876654311
Q ss_pred CCC--CCCCcchHHHHHHHHHHHHHHhccchhHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhc
Q 007694 293 IPG--NVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLMGAVGLAIWVPSVAN 356 (593)
Q Consensus 293 ~p~--~~~~~~~~~~a~~G~aa~~a~~~~apls~~vi~~E~tg~~~~~~P~~ia~~ia~~v~~~~~ 356 (593)
.+. .....+|+.|+++||+|++++++|+|+|++++++|+||++++++|+|+++++|+++++.++
T Consensus 346 ~~~~~~~~~~~~~~~alvGmaa~l~~~~r~Plt~~vi~~ElTg~~~~l~pl~ia~~ia~~v~~~~~ 411 (416)
T cd01036 346 IGAESATLWADPGVYALIGAAAFLGGTTRLTFSICVIMMELTGDLHHLLPLMVAILIAKAVADAFC 411 (416)
T ss_pred ccccccCCccChHHHHHHHHHHHhhhhhcchHhhhhheeeccCChhhHHHHHHHHHHHHHHHHhhC
Confidence 100 0123578999999999999999999999999999999999999999999999999999885
No 14
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=100.00 E-value=1.1e-54 Score=462.39 Aligned_cols=334 Identities=25% Similarity=0.347 Sum_probs=272.1
Q ss_pred CCChHHHHHHHHhcCCccccCcccccchhhHHHHHHHHHHHhcCCccCcchHHHHHHHHHHHHHHHhhc------CCHHH
Q 007694 2 MHGLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMME------NNRER 75 (593)
Q Consensus 2 ~~g~pev~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~sG~s~G~Egp~v~iga~~~~~~~~~~~------~~~~~ 75 (593)
|+|+||++++++.. +..++++.|+.+.|++++++++++|+|+|||||++|+|+++++.++|+++ .++++
T Consensus 72 GsGIp~v~~~l~g~-----~~~~~l~~r~~~~k~i~~~l~i~sG~svGrEGP~v~iGa~i~~~~~~~~~~~~~~~~~~~~ 146 (426)
T cd03683 72 GSGIPEMKTILRGV-----VLPEYLTFKTLVAKVIGLTCALGSGLPLGKEGPFVHISSIVAALLSKLTTFFSGIYENESR 146 (426)
T ss_pred CCCHHHHHHHHcCC-----CccccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcccccccccCHHH
Confidence 89999999988653 22357889999999999999999999999999999999999999999874 35666
Q ss_pred HHHHHHhhhHHHHHHhhhchHHHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHhhhc----CCccc---eeccc
Q 007694 76 KIALVAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLL----GTQSA---FTVPS 148 (593)
Q Consensus 76 ~~~l~~~g~aagiaa~F~aPi~G~lf~~E~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~---f~~~~ 148 (593)
|+++++||+|||+||+||||++|++|++|+++++++.+..+ +++++|++++++.+.+. ++.+. |..+.
T Consensus 147 rr~Li~~GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~~~-----~~~i~s~~a~~v~~~~~~~~~~~~~~~~~~~~~~ 221 (426)
T cd03683 147 RMEMLAAACAVGVACTFGAPIGGVLFSIEVTSTYFAVRNYW-----RGFFAATCGAFTFRLLAVFFSDQETITALFKTTF 221 (426)
T ss_pred HHHHHHhHhhhhhHHhcCCcceeeEEEeehhhhhccHHHHH-----HHHHHHHHHHHHHHHHHhhcCCCccccccccccc
Confidence 67899999999999999999999999999999888776544 46788888888777543 22222 32221
Q ss_pred --cCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hcCCCcchHhhhhHHHHHHHHhhcccccccchh
Q 007694 149 --YDLKSAAELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKE---KFGLPPVVCPALGGLGAGIIALRYPGILYWGFT 223 (593)
Q Consensus 149 --~~~~~~~~l~~~~llGv~~Gl~g~~f~~~~~~~~~~~~~~~~---~~~~~~~~~~~iggl~~g~~~~~~p~~~~~g~~ 223 (593)
...++.+++++++++|++||++|.+|++++.++.+++++.+. ..+.++++++.++|++++.+. +|
T Consensus 222 ~~~~~~~~~~l~~~i~lGv~~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~--~p-------- 291 (426)
T cd03683 222 FVDFPFDVQELPIFALLGIICGLLGALFVFLHRKIVRFRRKNRLFSKFLKRSPLLYPAIVALLTAVLT--FP-------- 291 (426)
T ss_pred cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHH--HH--------
Confidence 223566889999999999999999999999999887765432 123455677888888887643 34
Q ss_pred hHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHhhccCCccceehHHHHHHHHHHHHHHHHHHHHHhhhCCC-CCCCcch
Q 007694 224 NVEEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPG-NVAVAEP 302 (593)
Q Consensus 224 ~~~~~l~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~p~-~~~~~~~ 302 (593)
...++.+.+.|+++|++|+|+|+|||+|.|++++||++|+++|..+..+++..++. .....++
T Consensus 292 ----------------~~~l~~~~~~K~~~t~~t~gsG~~GGif~Psl~iGa~~G~~~g~~~~~~~p~~~~~~~~~~~~~ 355 (426)
T cd03683 292 ----------------FLTLFLFIVVKFVLTALAITLPVPAGIFMPVFVIGAALGRLVGEIMAVLFPEGIRGGISNPIGP 355 (426)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHhCCCChhhhHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCCcCc
Confidence 23455677899999999999999999999999999999999998876543210000 0123578
Q ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccccccchhHHHhhccCCCC
Q 007694 303 QAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLMGAVGLAIWVPSVANQAKETDASDKRTLARGYSSL 376 (593)
Q Consensus 303 ~~~a~~G~aa~~a~~~~apls~~vi~~E~tg~~~~~~P~~ia~~ia~~v~~~~~~~~~~~~~~~~~~~~~y~~~ 376 (593)
..|+++||+|++++++|+|.++ ++++|+||++++++|+|+++++|+++++.+++ ++|+..++.+++|++
T Consensus 356 ~~~alvGmaa~~a~~~ra~~t~-vlv~E~Tg~~~~llpl~ia~~ia~~v~~~~~~----~iY~~~l~~~~~p~l 424 (426)
T cd03683 356 GGYAVVGAAAFSGAVTHTVSVA-VIIFELTGQISHLLPVLIAVLISNAVAQFLQP----SIYDSIIKIKKLPYL 424 (426)
T ss_pred hHHHHHHHHHHHHHHHhHHHHH-heeeeecCCcchHHHHHHHHHHHHHHHHhhCC----CHHHHHHHhCCCCCC
Confidence 9999999999999999997766 69999999999999999999999999998853 689999999999987
No 15
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=100.00 E-value=9.4e-54 Score=459.27 Aligned_cols=329 Identities=24% Similarity=0.320 Sum_probs=257.8
Q ss_pred CCCChHHHHHHHHhcCCccccCcccccchhhHHHHHHHHHHHhcCCccCcchHHHHHHHHHHHHHHHh-----------h
Q 007694 1 MMHGLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLM-----------M 69 (593)
Q Consensus 1 ~~~g~pev~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~sG~s~G~Egp~v~iga~~~~~~~~~-----------~ 69 (593)
.|+|+||++++++.. +..++++.|+.+.|++++++++++|+|+|||||++|+|+++|++++|+ +
T Consensus 104 ~GsGip~v~~~l~g~-----~~~~~l~~r~~~~K~i~~~l~vgsG~s~GrEGP~v~iGa~ig~~~~~~~~~~~~~~~~~~ 178 (466)
T cd03685 104 AGSGIPEVKGYLNGV-----KIPHILRLKTLLVKIVGVILSVSGGLALGKEGPMIHIGACIAAGLSQGGSTSLRLDFRWF 178 (466)
T ss_pred CCCCHHHHHHHHcCc-----CccccchHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHhhccccccccchhhh
Confidence 389999999999743 223457889999999999999999999999999999999999999873 2
Q ss_pred c--CCHHHHHHHHHhhhHHHHHHhhhchHHHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHhhhc---CC--cc
Q 007694 70 E--NNRERKIALVAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLL---GT--QS 142 (593)
Q Consensus 70 ~--~~~~~~~~l~~~g~aagiaa~F~aPi~G~lf~~E~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~ 142 (593)
+ .++++|+++++||+|||+|++||||++|++|++|++.++++.+..++ .++++++++++.+.+. +. ..
T Consensus 179 ~~~~~~~~~r~li~~GaAAGlaaaF~APl~G~lFa~E~l~~~~~~~~~~~-----~l~~s~ias~va~~~~~~~~~~~~~ 253 (466)
T cd03685 179 RYFRNDRDKRDFVTCGAAAGVAAAFGAPVGGVLFSLEEVASFWNQALTWR-----TFFSSMIVTFTLNFFLSGCNSGKCG 253 (466)
T ss_pred hhccCHHHHHHHHHHHhhcchhhccCCCcceeeeeeehhhhhcchhHHHH-----HHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 2 24455568999999999999999999999999999988777665433 4455555555444332 11 11
Q ss_pred ce--------ecc-ccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchHhhhhHHHHHHHHhh
Q 007694 143 AF--------TVP-SYDLKSAAELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALR 213 (593)
Q Consensus 143 ~f--------~~~-~~~~~~~~~l~~~~llGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iggl~~g~~~~~ 213 (593)
.| ..+ ....+++.++++++++|++||++|.+|++.+.++++++++.+++ +++.+ .+++++++++...
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~l~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~~~~---~~~~~-~l~~~lv~~~~~~ 329 (466)
T cd03685 254 LFGPGGLIMFDGSSTKYLYTYFELIPFMLIGVIGGLLGALFNHLNHKVTRFRKRINHK---GKLLK-VLEALLVSLVTSV 329 (466)
T ss_pred ccCCccceecccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cchhH-HHHHHHHHHHHHH
Confidence 22 222 12245678999999999999999999999999998887654321 22222 2344443333222
Q ss_pred cccccccchhhHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHhhccCCccceehHHHHHHHHHHHHHHHHHHHHHhhhC
Q 007694 214 YPGILYWGFTNVEEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAI 293 (593)
Q Consensus 214 ~p~~~~~g~~~~~~~l~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~ 293 (593)
++. ...+..++++|+++|++|+|+|+|||+|.|++++||++|+++|.++..++
T Consensus 330 ~~~-----------------------~~~l~~~~~~k~l~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~---- 382 (466)
T cd03685 330 VAF-----------------------PQTLLIFFVLYYFLACWTFGIAVPSGLFIPMILIGAAYGRLVGILLGSYF---- 382 (466)
T ss_pred HHH-----------------------HHHHHHHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHHc----
Confidence 210 12344566789999999999999999999999999999999998876542
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHhccchhHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccccccchhHHHhhccC
Q 007694 294 PGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLMGAVGLAIWVPSVANQAKETDASDKRTLARGY 373 (593)
Q Consensus 294 p~~~~~~~~~~~a~~G~aa~~a~~~~apls~~vi~~E~tg~~~~~~P~~ia~~ia~~v~~~~~~~~~~~~~~~~~~~~~y 373 (593)
|. ...+++.|+++||+|++++++|+|+|++++++|+||++++++|+|+++++|+++++.++ +++|+..++.+++
T Consensus 383 ~~--~~~~~~~~aliGmaa~lag~~raPlt~iviv~ElTg~~~~l~pl~ia~~iA~~va~~~~----~siY~~~l~~~g~ 456 (466)
T cd03685 383 GF--TSIDPGLYALLGAAAFLGGVMRMTVSLTVILLELTNNLTYLPPIMLVLMIAKWVGDYFN----EGIYDIIIQLKGV 456 (466)
T ss_pred cc--cCCCchHHHHHHHHHHHhHHhhhhHHHHHHhhhhcCChhhHHHHHHHHHHHHHHHHHhC----CCHHHHHHHhCCC
Confidence 32 23579999999999999999999999999999999999999999999999999999874 3689999999999
Q ss_pred CCC
Q 007694 374 SSL 376 (593)
Q Consensus 374 ~~~ 376 (593)
|++
T Consensus 457 p~l 459 (466)
T cd03685 457 PFL 459 (466)
T ss_pred ccc
Confidence 987
No 16
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=100.00 E-value=1.1e-51 Score=436.74 Aligned_cols=322 Identities=44% Similarity=0.674 Sum_probs=283.1
Q ss_pred CCCChHHHHHHHHhcCCccccCcccccchhhHHHHHHHHHHHhcCCccCcchHHHHHHHHHHHHHHHhhcCCHHHHHHHH
Q 007694 1 MMHGLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIALV 80 (593)
Q Consensus 1 ~~~g~pev~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~sG~s~G~Egp~v~iga~~~~~~~~~~~~~~~~~~~l~ 80 (593)
.|+|+||++++++...+ .+..++.+.|++++++++++|+|+|||||++|+|+++|++++++++.++++|+.++
T Consensus 62 ~g~G~~~v~~~~~~~~~-------~~~~~~~~~k~l~~~l~~~~G~s~G~egP~v~iGa~~g~~~~~~~~~~~~~~~~l~ 134 (383)
T cd00400 62 RGHGIPEVIEAIALGGG-------RLPLRVALVKFLASALTLGSGGSVGREGPIVQIGAAIGSWLGRRLRLSRNDRRILV 134 (383)
T ss_pred cCCChHHHHHHHHhCCC-------CCCHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 37899999999976432 34678999999999999999999999999999999999999999988877777899
Q ss_pred HhhhHHHHHHhhhchHHHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHhhhcCCccceeccccCCCccchHHHH
Q 007694 81 AAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLY 160 (593)
Q Consensus 81 ~~g~aagiaa~F~aPi~G~lf~~E~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~ 160 (593)
+||+|||++++||||++|++|++|++.+++..+.+ .++++++++++++++.+.++.+.|.++....+++.+++++
T Consensus 135 ~~G~aaglaa~f~aPl~g~lf~~E~~~~~~~~~~~-----~~~~~~~~~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (383)
T cd00400 135 ACGAAAGIAAAFNAPLAGALFAIEVLLGEYSVASL-----IPVLLASVAAALVSRLLFGAEPAFGVPLYDPLSLLELPLY 209 (383)
T ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhccHHHH-----HHHHHHHHHHHHHHHHHcCCCCeeeCCCCCcCCHHHHHHH
Confidence 99999999999999999999999999877655433 3478999999999999999888888886667788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchHhhhhHHHHHHHHhhcccccccchhhHHHHHhcCCCCCcchH
Q 007694 161 LILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTASAPGI 240 (593)
Q Consensus 161 ~llGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iggl~~g~~~~~~p~~~~~g~~~~~~~l~~~~~~~~~~~ 240 (593)
+++|++||++|.+|++.+.++++++++. +.++++++.++|++++++.+++|+..|+|++.+++..++. ...
T Consensus 210 il~Gv~~g~~g~~f~~~~~~~~~~~~~~----~~~~~~~~~i~gll~~~~~~~~p~~~g~G~~~~~~~~~~~-----~~~ 280 (383)
T cd00400 210 LLLGLLAGLVGVLFVRLLYKIERLFRRL----PIPPWLRPALGGLLLGLLGLFLPQVLGSGYGAILLALAGE-----LSL 280 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc----CCcHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHcCC-----hhH
Confidence 9999999999999999999998877643 3456788999999999999999999999999887766432 234
Q ss_pred HHHHHHHHHHHHHHHHhhccCCccceehHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcchHHHHHHHHHHHHHHhccc
Q 007694 241 WLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSV 320 (593)
Q Consensus 241 ~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~p~~~~~~~~~~~a~~G~aa~~a~~~~a 320 (593)
..+..+++.|+++|++|+++|+|||+|.|++++||++|+.+++++..+ +|. ...++..|+++||+|++++++|+
T Consensus 281 ~~l~~~~~~K~~~t~l~~~sG~~GG~~~P~l~iGa~~G~~~~~~~~~~----~~~--~~~~~~~~~~~G~aa~la~~~~a 354 (383)
T cd00400 281 LLLLLLLLLKLLATALTLGSGFPGGVFAPSLFIGAALGAAFGLLLPAL----FPG--LVASPGAYALVGMAALLAAVLRA 354 (383)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHh----CCc--ccCChHHHHHHHHHHHHHHHhCc
Confidence 456678899999999999999999999999999999999999987654 342 23589999999999999999999
Q ss_pred hhHHHHHHHHHhCCchhHHHHHHHHHHHH
Q 007694 321 PLTSVLLLFELTRDYRILLPLMGAVGLAI 349 (593)
Q Consensus 321 pls~~vi~~E~tg~~~~~~P~~ia~~ia~ 349 (593)
|++++++++|+||+++.++|+|+++++||
T Consensus 355 Plt~~vl~~Eltg~~~~l~p~~ia~~ia~ 383 (383)
T cd00400 355 PLTAILLVLELTGDYSLLLPLMLAVVIAY 383 (383)
T ss_pred hHHHHHHHHHHhCChhhHHHHHHHHHhcC
Confidence 99999999999999999999999998875
No 17
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=6.6e-50 Score=420.46 Aligned_cols=313 Identities=22% Similarity=0.279 Sum_probs=264.3
Q ss_pred CCChHHHHHHHHhcCCccccCcccccchhhHHHHHHHHHHHhcCCccCcchHHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 007694 2 MHGLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIALVA 81 (593)
Q Consensus 2 ~~g~pev~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~sG~s~G~Egp~v~iga~~~~~~~~~~~~~~~~~~~l~~ 81 (593)
++|+||++++++.+.+ .+++|....|++++.+++++|+|+|||||++|+|++++++++|+++.++++++++++
T Consensus 56 ~~g~~~v~~~~~~~~~-------~~~~~~~~~k~~~~~l~l~~G~s~G~Egp~v~~ga~~~~~~~~~~~~~~~~~r~l~~ 128 (378)
T cd03682 56 EKGNNLIIEEIHGPEE-------GIPLRMAPLVLFGTVLTHLFGGSAGREGTAVQMGGSLADAFGRVFKLPEEDRRILLI 128 (378)
T ss_pred CCChHHHHHHHHccCC-------CCchHHHHHHHHHHHHHHHcCCccCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 6899999999976532 245678889999999999999999999999999999999999999988877778999
Q ss_pred hhhHHHHHHhhhchHHHHHHHHHhcc-cccccccCChhHHHHHHHHHHHHHHHHhhhcCCccceeccccCCCccchHHHH
Q 007694 82 AGAASGIASGFNAAVAGCFFAIETVL-RPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLY 160 (593)
Q Consensus 82 ~g~aagiaa~F~aPi~G~lf~~E~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~ 160 (593)
||+|||++++||||++|++|++|+++ ++++.+. ..+++++|++++.+.+.+....+.|.++....+++++++++
T Consensus 129 ~g~aAglaa~f~aPl~g~~f~~E~~~~~~~~~~~-----~~~~~i~~~~a~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~ 203 (378)
T cd03682 129 AGIAAGFAAVFGTPLAGAIFALEVLVLGRLRYSA-----LIPCLVAAIVADWVSHALGLEHTHYHIVFIPTLDPLLFVKV 203 (378)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHhhhhHHH-----HHHHHHHHHHHHHHHHHhCCCCCccccCCCCCCCHHHHHHH
Confidence 99999999999999999999999986 4444332 23478899999999887766656676654445678889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchHhhhhHHHHHHHHhhc--ccccccchhhHHHHHhcCCCCCcc
Q 007694 161 LILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRY--PGILYWGFTNVEEILHTGKTASAP 238 (593)
Q Consensus 161 ~llGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iggl~~g~~~~~~--p~~~~~g~~~~~~~l~~~~~~~~~ 238 (593)
+++|++||++|.+|++.+.++++++++. ..+.++++.++|++++++.++. |+..|.|++.+++.+.+++ .
T Consensus 204 i~~Gi~~gl~g~~f~~~~~~~~~~~~~~----~~~~~~~~~iggl~~g~~~~~~~~~~~~G~g~~~i~~~~~~~~----~ 275 (378)
T cd03682 204 ILAGIIFGLAGRLFAELLHFLKKLLKKR----IKNPYLRPFVGGLLIILLVYLLGSRRYLGLGTPLIEDSFFGGT----V 275 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc----cCCcHHHHHHHHHHHHHHHHHhcCCccccCCHHHHHHHHhcCC----c
Confidence 9999999999999999999998887533 2456788999999999988775 4567999988887333322 1
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCCccceehHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcchHHHHHHHHHHHHHHhc
Q 007694 239 GIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVC 318 (593)
Q Consensus 239 ~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~p~~~~~~~~~~~a~~G~aa~~a~~~ 318 (593)
.. ...+.|+++|++|+|+|+|||+|.|++++||++|+.++++++ .++..|++|||+|++++++
T Consensus 276 ~~----~~~l~K~~~t~~s~g~G~~GG~f~P~l~iGa~~G~~~~~~~~-------------~~~~~~~~~Gmaa~laa~~ 338 (378)
T cd03682 276 YP----YDWLLKLIFTVITLGAGFKGGEVTPLFFIGATLGNALAPILG-------------LPVSLLAALGFVAVFAGAT 338 (378)
T ss_pred hH----HHHHHHHHHHHHHHhcCCCCceechHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHHh
Confidence 11 235789999999999999999999999999999999997642 2567999999999999999
Q ss_pred cchhHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Q 007694 319 SVPLTSVLLLFELTRDYRILLPLMGAVGLAIWVP 352 (593)
Q Consensus 319 ~apls~~vi~~E~tg~~~~~~P~~ia~~ia~~v~ 352 (593)
|+|+|++++++|+|| ++.++|+|+++++|+.++
T Consensus 339 raPlt~ivl~~Eltg-~~~~~p~~ia~~ia~~~~ 371 (378)
T cd03682 339 NTPLACIIMGIELFG-AENAPYFFIACLVAYLFS 371 (378)
T ss_pred cchHHHHHHHHHHhC-ccchHHHHHHHHHHHHHh
Confidence 999999999999999 578889999999999986
No 18
>PRK03655 putative ion channel protein; Provisional
Probab=100.00 E-value=1.5e-46 Score=395.81 Aligned_cols=297 Identities=18% Similarity=0.242 Sum_probs=243.8
Q ss_pred ccchhhHHHHHHHHHHHhcCCccCcchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHhhhHHHHHHhhhchHHHHHHHHHh
Q 007694 26 VAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIALVAAGAASGIASGFNAAVAGCFFAIET 105 (593)
Q Consensus 26 ~~~~~~~~k~~~~~~~l~sG~s~G~Egp~v~iga~~~~~~~~~~~~~~~~~~~l~~~g~aagiaa~F~aPi~G~lf~~E~ 105 (593)
++.+....|++++++++++|+|+|||||+||+|++++++++|+++...++ ++++.||+|||+||+||||++|++|++|+
T Consensus 95 ~~~~~~~~~~~~~~l~l~~G~S~GrEGP~VqiGa~igs~~~r~~~~~~~~-~~l~~~gaAaGiaAaFnaPLaG~lFa~E~ 173 (414)
T PRK03655 95 VPPSALPGLLLALILGLAGGVSLGPEHPIMTVNIALAVAIGARLLPRVNR-MDWTILASAGTIGALFGTPVAAALIFSQT 173 (414)
T ss_pred CCccHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhccCCCh-hHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 34567788999999999999999999999999999999999988443333 35788999999999999999999999999
Q ss_pred cccccccccCChhHHHHHHHHHHHHHHHHhhhcCCccceeccccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007694 106 VLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYLILGMLCGVVSVVFTRLVAWFTKSF 185 (593)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~~llGv~~Gl~g~~f~~~~~~~~~~~ 185 (593)
+++++....+.. .. ..++++++++.+.+.+++....|.++.+...+.+++++++++|++||++|.+|++...++++++
T Consensus 174 l~~~~~~~~~~~-~~-~~v~aa~~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lgi~~gl~G~lf~~~~~~~~~~~ 251 (414)
T PRK03655 174 LNGSNEVPLWDR-LF-APLMAAAAGALTTGLFFHPHFSLPIAHYGQMEMTDILSGAIVAAIAIAAGMVAVWCLPRLHALM 251 (414)
T ss_pred HHHhhhHHHHHH-HH-HHHHHHHHHHHHHHHhCCCCcceecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988766421111 11 1345677777777777655444566666666778899999999999999999999988888776
Q ss_pred HHHhhhcCCCcchHhhhhHHHHHHHHhhc-ccccccchhhHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHhhccCCcc
Q 007694 186 DFIKEKFGLPPVVCPALGGLGAGIIALRY-PGILYWGFTNVEEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVG 264 (593)
Q Consensus 186 ~~~~~~~~~~~~~~~~iggl~~g~~~~~~-p~~~~~g~~~~~~~l~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~g 264 (593)
++. +.| ++++.++|+++|+++++. |+.+|+||+++++++++++ ...+.++.+.++|+++|++|+++|+||
T Consensus 252 ~~~----~~p-~~~~~lgGl~vg~l~l~~~~~~~g~Gy~~i~~~~~~~~----~~~~~ll~l~l~K~lat~ls~~sG~~G 322 (414)
T PRK03655 252 HRL----KNP-VLVLGIGGFILGILGVIGGPLTLFKGLDEMQQMAANQA----FSASDYFLLAVVKLAALVVAAASGFRG 322 (414)
T ss_pred Hhc----ccc-hHHHHHHHHHHHHHHHHhCCccccCCHHHHHHHHhcCC----ccHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 533 234 356789999999999876 6789999999998876522 235666778899999999999999999
Q ss_pred ceehHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcchHHHHHHHHHHHHHHhcc----chhHHHHHHHHHhCCchhHHH
Q 007694 265 GLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCS----VPLTSVLLLFELTRDYRILLP 340 (593)
Q Consensus 265 G~f~P~l~iGa~~G~~~g~~~~~~~~~~~p~~~~~~~~~~~a~~G~aa~~a~~~~----apls~~vi~~E~tg~~~~~~P 340 (593)
|+|+|++++||++|..+++++ |+ .++...+++||+|++++++| +|+|++++++||| ++|
T Consensus 323 GiF~PsL~iGA~~G~~~~~l~--------p~----~~~~~~v~~~m~a~la~vtr~p~~sp~ta~viv~em~-----~~~ 385 (414)
T PRK03655 323 GRIFPAVFVGVALGLMLHAHV--------PA----VPAAITVSCAILGIVLVVTRDGWLSLFMAAVVVPDTT-----LLP 385 (414)
T ss_pred ceehHHHHHHHHHHHHHHHhc--------cC----CChHHHHHHHHHHHHHHHhccchhhHHHHHHHHhcch-----HHH
Confidence 999999999999999887642 32 46788999999999999999 6999999999999 889
Q ss_pred HHHHHHHHHHH
Q 007694 341 LMGAVGLAIWV 351 (593)
Q Consensus 341 ~~ia~~ia~~v 351 (593)
+|++++++.|+
T Consensus 386 l~~~~~~~~~~ 396 (414)
T PRK03655 386 LLCIVMLPAWL 396 (414)
T ss_pred HHHHHHHHHHH
Confidence 99999888887
No 19
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.85 E-value=2.9e-20 Score=206.73 Aligned_cols=184 Identities=21% Similarity=0.182 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hh-hcCCCcc---hHhhhhHHHHHHHHhhc-ccccccchhhHHH
Q 007694 157 LPLYLILGMLCGVVSVVFTRLVAWFTKSFDFI----KE-KFGLPPV---VCPALGGLGAGIIALRY-PGILYWGFTNVEE 227 (593)
Q Consensus 157 l~~~~llGv~~Gl~g~~f~~~~~~~~~~~~~~----~~-~~~~~~~---~~~~iggl~~g~~~~~~-p~~~~~g~~~~~~ 227 (593)
+...+++|+++|+.+.+|.+++++.++++... .+ ....|++ +.|.+||++.|++..+. +...+.|-.+..+
T Consensus 25 ~~~~~~vG~~~Gl~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ggli~~~~~~~~~~~~~~~g~~~~~~ 104 (574)
T PRK01862 25 LIWSAIVGIGGAFATTAFREGIELIQHLISGHSGSFVEMAKSLPWYVRVWLPAAGGFLAGCVLLLANRGARKGGKTDYME 104 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHhhcccHHHHHHHHHHHHHHHHHHHHHhccccccCCcHHHHH
Confidence 45679999999999999999999988875321 01 1112322 33567778777765433 2222233333344
Q ss_pred HHhcCCCCCcchHHHHHHHHHHHHHHHHHhhccCCccceehHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcchHHHHH
Q 007694 228 ILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYAL 307 (593)
Q Consensus 228 ~l~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~p~~~~~~~~~~~a~ 307 (593)
..+++.... +++ ..+.|++.+.+|+|+|.|.|+++|++++||++|+.++++++. ...+...+.+
T Consensus 105 ~~~~~~~~~--~~~----~~~~k~~~~~l~i~~G~s~G~EgP~v~~ga~~~~~~~~~~~~----------~~~~~r~l~~ 168 (574)
T PRK01862 105 AVALGDGVV--PVR----QSLWRSASSLLTIGSGGSIGREGPMVQLAALAASLVGRFAHF----------DPPRLRLLVA 168 (574)
T ss_pred HHHcCCCCC--ChH----HHHHHHHHHHHHHHcCCCcCCcchHHHHHHHHHHHHHHHhCC----------CHHHHHHHHH
Confidence 444333222 122 334599999999999999999999999999999999987642 1235678899
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHh-CCc--hhHHHHHHHHHHHHHHHHhhc
Q 007694 308 VGMAATLASVCSVPLTSVLLLFELT-RDY--RILLPLMGAVGLAIWVPSVAN 356 (593)
Q Consensus 308 ~G~aa~~a~~~~apls~~vi~~E~t-g~~--~~~~P~~ia~~ia~~v~~~~~ 356 (593)
||+||++++++++|+++++|++|.+ +++ +.+.|.++++++|+.+++.+.
T Consensus 169 ~G~aAglaa~F~aPl~g~lFa~E~~~~~~~~~~~~~~~~as~~a~~v~~~~~ 220 (574)
T PRK01862 169 CGAAAGITSAYNAPIAGAFFVAEIVLGSIAMESFGPLVVASVVANIVMREFA 220 (574)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999975 544 788999999999999998874
No 20
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=99.76 E-value=1e-17 Score=177.49 Aligned_cols=178 Identities=26% Similarity=0.314 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-h---cCCCc---chHhhhhHHHHHHHHhhcccccccchhhHHHHHhcCCCCC
Q 007694 164 GMLCGVVSVVFTRLVAWFTKSFDFIKE-K---FGLPP---VVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTAS 236 (593)
Q Consensus 164 Gv~~Gl~g~~f~~~~~~~~~~~~~~~~-~---~~~~~---~~~~~iggl~~g~~~~~~p~~~~~g~~~~~~~l~~~~~~~ 236 (593)
|+++|+.+.+|.+++++.++++.+... . ...++ ++.+.+++++++++..+.|...+.|.+++.+.++.....
T Consensus 1 Gi~~Gl~~~lf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~l~~~~~~~~~g~G~~~v~~~~~~~~~~- 79 (383)
T cd00400 1 GVLSGLGAVLFRLLIELLQNLLFGGLPGELAAGSLSPLYILLVPVIGGLLVGLLVRLLGPARGHGIPEVIEAIALGGGR- 79 (383)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHHHhCcccCCChHHHHHHHHhCCCC-
Confidence 689999999999999999987754321 0 01222 355778888888887777767889999988777643321
Q ss_pred cchHHHHHHHHHHHHHHHHHhhccCCccceehHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcchHHHHHHHHHHHHHH
Q 007694 237 APGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLAS 316 (593)
Q Consensus 237 ~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~p~~~~~~~~~~~a~~G~aa~~a~ 316 (593)
.. ....+.|++.+.+++++|.|+|+|+|++++|+++|..+++.++. +..+...++++||+|.+++
T Consensus 80 -~~----~~~~~~k~l~~~l~~~~G~s~G~egP~v~iGa~~g~~~~~~~~~----------~~~~~~~l~~~G~aaglaa 144 (383)
T cd00400 80 -LP----LRVALVKFLASALTLGSGGSVGREGPIVQIGAAIGSWLGRRLRL----------SRNDRRILVACGAAAGIAA 144 (383)
T ss_pred -CC----HHHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHhCC----------CHHHHHHHHHHHHHHHHHH
Confidence 11 23456799999999999999999999999999999999986532 1246788999999999999
Q ss_pred hccchhHHHHHHHHHhCCch---hHHHHHHHHHHHHHHHHhhcc
Q 007694 317 VCSVPLTSVLLLFELTRDYR---ILLPLMGAVGLAIWVPSVANQ 357 (593)
Q Consensus 317 ~~~apls~~vi~~E~tg~~~---~~~P~~ia~~ia~~v~~~~~~ 357 (593)
++|+|++++++++|++++.. .+.|+++++++++.+++.+..
T Consensus 145 ~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~a~~v~~~~~~ 188 (383)
T cd00400 145 AFNAPLAGALFAIEVLLGEYSVASLIPVLLASVAAALVSRLLFG 188 (383)
T ss_pred hcCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999987654 789999999999999988753
No 21
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.74 E-value=4.9e-17 Score=155.62 Aligned_cols=137 Identities=20% Similarity=0.269 Sum_probs=114.9
Q ss_pred HHhhhhhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCcccccc
Q 007694 413 MLLEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVN 492 (593)
Q Consensus 413 ~~l~~i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~ 492 (593)
..+..+++.|+|++|++++++++++.++.+.|.+++.+.+||+|++.+++|+|+++|+.+.......+ ..+...
T Consensus 240 R~~~~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~~p~q------rlr~~~ 313 (382)
T COG3448 240 RRMGELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQ------RLRFLR 313 (382)
T ss_pred HHhccccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCcchHH------HhhccC
Confidence 45667899999999999999999999999999999999999999999999999999998742110000 000112
Q ss_pred ccchhhhhccCccccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHHHHHHHH
Q 007694 493 TCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLREEVN 572 (593)
Q Consensus 493 ~~~V~dim~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~~~~~~~ 572 (593)
..+++++|++.. .++.+|++..+..-+|.+.+.+++||+|+ +|+++||||+.|++.++.....
T Consensus 314 ~~~vk~imt~~v---------~tv~pdtpa~~lvp~lad~g~H~lpvld~--------~g~lvGIvsQtDliaal~r~~~ 376 (382)
T COG3448 314 PPTVKGIMTTPV---------VTVRPDTPAVELVPRLADEGLHALPVLDA--------AGKLVGIVSQTDLIAALYRNWS 376 (382)
T ss_pred CCcccccccCcc---------eeecCCCcHHHHHHHhhcCCcceeeEEcC--------CCcEEEEeeHHHHHHHHHHHHH
Confidence 357889998766 89999999999999999999999999998 8999999999999988765543
No 22
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=99.74 E-value=2.4e-17 Score=175.46 Aligned_cols=178 Identities=28% Similarity=0.301 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-C-CCcch----HhhhhHHHHHHHHhh-cccccccchhhHHHHHhcCCCC
Q 007694 163 LGMLCGVVSVVFTRLVAWFTKSFDFIKEKF-G-LPPVV----CPALGGLGAGIIALR-YPGILYWGFTNVEEILHTGKTA 235 (593)
Q Consensus 163 lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~-~-~~~~~----~~~iggl~~g~~~~~-~p~~~~~g~~~~~~~l~~~~~~ 235 (593)
+|+++|+++.+|.+.+++.++++....+.. . .+.++ .+.++|++++.+..+ .|+..|+|++++++.++.....
T Consensus 1 iGi~~G~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~p~~~g~G~~~v~~~l~~~~~~ 80 (402)
T cd01031 1 IGLLAGLVAVLFRLGIDKLGNLRLSLYDFAANNPPLLLVLPLISAVLGLLAGWLVKKFAPEAKGSGIPQVEGVLAGLLPP 80 (402)
T ss_pred CeehHhHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHHHHcCCCCc
Confidence 488999999999999999998876543211 1 11122 223455666665544 7999999999999988754321
Q ss_pred CcchHHHHHHHHHHHHHHHHHhhccCCccceehHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcchHHHHHHHHHHHHH
Q 007694 236 SAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLA 315 (593)
Q Consensus 236 ~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~p~~~~~~~~~~~a~~G~aa~~a 315 (593)
. .....+.|++.+.+++|+|.|+|+|+|++++|+++|..+++.++. ...+...++.+||+|+++
T Consensus 81 --~----~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iga~ig~~~~~~~~~----------~~~~~~~l~~~g~aag~a 144 (402)
T cd01031 81 --N----WWRVLPVKFVGGVLALGSGLSLGREGPSVQIGAAIGQGVSKWFKT----------SPEERRQLIAAGAAAGLA 144 (402)
T ss_pred --c----cHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHHhcC----------CHHHHHHHHHHHHHHhHH
Confidence 1 123567899999999999999999999999999999999986532 124678899999999999
Q ss_pred HhccchhHHHHHHHH-HhCCc--hhHHHHHHHHHHHHHHHHhhc
Q 007694 316 SVCSVPLTSVLLLFE-LTRDY--RILLPLMGAVGLAIWVPSVAN 356 (593)
Q Consensus 316 ~~~~apls~~vi~~E-~tg~~--~~~~P~~ia~~ia~~v~~~~~ 356 (593)
+++|+|++++++++| +++++ +.+.|+++++++|+.+++.+.
T Consensus 145 a~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~a~~~a~~v~~~~~ 188 (402)
T cd01031 145 AAFNAPLAGVLFVLEELRHSFSPLALLTALVASIAADFVSRLFF 188 (402)
T ss_pred HHhCCccHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999 66765 579999999999999988763
No 23
>PRK05277 chloride channel protein; Provisional
Probab=99.73 E-value=8.2e-17 Score=173.13 Aligned_cols=184 Identities=21% Similarity=0.215 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---CCcchHhhhhHHHHHHHH-----hhcccccccchhhHHHHH
Q 007694 158 PLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFG---LPPVVCPALGGLGAGIIA-----LRYPGILYWGFTNVEEIL 229 (593)
Q Consensus 158 ~~~~llGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~---~~~~~~~~iggl~~g~~~-----~~~p~~~~~g~~~~~~~l 229 (593)
.+++++|+++|+++.+|.+.++++++++........ ++.|..+.+.+.+.+.++ .+.|+..|+|++++++.+
T Consensus 2 ~~~i~iGi~~Gl~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~p~~~GsGi~~i~~~l 81 (438)
T PRK05277 2 FMAAVVGTLTGLVGVAFELAVDWVQNQRLGLLASVADNGLLLWIVAFLISAVLAMIGYFLVRRFAPEAGGSGIPEIEGAL 81 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHH
Confidence 567999999999999999999999988765432211 122222333333333222 245888999999999888
Q ss_pred hcCCCCCcchHHHHHHHHHHHHHHHHHhhccCCccceehHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcchHHHHHHH
Q 007694 230 HTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVG 309 (593)
Q Consensus 230 ~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~p~~~~~~~~~~~a~~G 309 (593)
++... +.. ....+.|++.+.+++|+|.|+|+|+|++++|+++|+.+++.++. . +..+...+..||
T Consensus 82 ~~~~~---~~~---~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iGa~ig~~~~~~~~~----~-----~~~~~~~li~~G 146 (438)
T PRK05277 82 EGLRP---VRW---WRVLPVKFFGGLGTLGSGMVLGREGPTVQMGGNIGRMVLDIFRL----R-----SDEARHTLLAAG 146 (438)
T ss_pred cCCCc---cch---HHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHHccc----C-----CHHHHHHHHHHH
Confidence 75432 111 12347899999999999999999999999999999999886532 0 113677899999
Q ss_pred HHHHHHHhccchhHHHHHHHH-HhCC--c--hhHHHHHHHHHHHHHHHHhhc
Q 007694 310 MAATLASVCSVPLTSVLLLFE-LTRD--Y--RILLPLMGAVGLAIWVPSVAN 356 (593)
Q Consensus 310 ~aa~~a~~~~apls~~vi~~E-~tg~--~--~~~~P~~ia~~ia~~v~~~~~ 356 (593)
|+|++++++|+|++++++++| ++++ + ..+.|+++++++|+.+.+.+.
T Consensus 147 ~aaglaa~f~APl~g~lf~~E~~~~~~~~~~~~~~~~~~a~~~a~~v~~~~~ 198 (438)
T PRK05277 147 AAAGLAAAFNAPLAGILFVIEEMRPQFRYSLISIKAVFIGVIMATIVFRLFN 198 (438)
T ss_pred HHHhHHHhcCCchHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999 5653 2 357899999999999988774
No 24
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.69 E-value=7.6e-16 Score=163.87 Aligned_cols=184 Identities=22% Similarity=0.263 Sum_probs=140.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----Hhh-hcCCCcc---hHhhhhHHHHHHHHhhc-c--cccccch
Q 007694 155 AELPLYLILGMLCGVVSVVFTRLVAWFTKSFDF-----IKE-KFGLPPV---VCPALGGLGAGIIALRY-P--GILYWGF 222 (593)
Q Consensus 155 ~~l~~~~llGv~~Gl~g~~f~~~~~~~~~~~~~-----~~~-~~~~~~~---~~~~iggl~~g~~~~~~-p--~~~~~g~ 222 (593)
+.+.+.+++|+++|+.+.+|.+.++++++.+-. ..+ ....++| +.|.+||++.|++...+ | +..++|.
T Consensus 3 ~~~~~a~~iG~~~G~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~ggll~g~~~~~~~~~~~~~~~g~ 82 (418)
T PRK01610 3 RRLLIATVVGILAALAVAGFRHAMLLLEWLFLSNDSGSLVNAATNLSPWRRLLTPALGGLAAGLLLWGWQKFTQQRPHAP 82 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchhhcccccchHHHHHHHHHHHHHHHHHHHHHcccccccCCCc
Confidence 456677999999999999999999888764321 000 0112333 34667889888876544 3 3456777
Q ss_pred hhHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHhhccCCccceehHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcch
Q 007694 223 TNVEEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEP 302 (593)
Q Consensus 223 ~~~~~~l~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~p~~~~~~~~ 302 (593)
+++.+.+++ +...+.. ..+.|++.+.+++|+|.|.|+|+|+.++|+++|+.+++.++. ..+.
T Consensus 83 ~~vi~av~~-~g~~~~~------~~~~k~~~~~l~igsG~S~GrEGP~v~iGa~~g~~~~~~~~~-----------~~~~ 144 (418)
T PRK01610 83 TDYMEALQT-DGQFDYA------ASLVKSLASLLVVTSGSAIGREGAMILLAALAASCFAQRFTP-----------RQEW 144 (418)
T ss_pred HHHHHHHHc-CCCCCcc------HHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhCC-----------hHHH
Confidence 777777765 2222222 235699999999999999999999999999999999986531 2467
Q ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHh-C--CchhHHHHHHHHHHHHHHHHhhc
Q 007694 303 QAYALVGMAATLASVCSVPLTSVLLLFELT-R--DYRILLPLMGAVGLAIWVPSVAN 356 (593)
Q Consensus 303 ~~~a~~G~aa~~a~~~~apls~~vi~~E~t-g--~~~~~~P~~ia~~ia~~v~~~~~ 356 (593)
..+..||++|.+++++|+|+++++|.+|.. + .+..+.|+++++++|+.+++.+.
T Consensus 145 r~li~~GaaAGlaa~F~aPlaG~lFa~E~l~~~~~~~~~~p~~ias~~a~~v~~~~~ 201 (418)
T PRK01610 145 KLWIACGAAAGMASAYHAPLAGSLFIAEILFGTLMLASLGPVVISAVVALLTTNLLN 201 (418)
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 889999999999999999999999999964 4 34678899999999999988773
No 25
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.68 E-value=8.6e-16 Score=161.97 Aligned_cols=175 Identities=22% Similarity=0.327 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCc-chHhhhhHHHHHHHHhhcccccccchhhHHHHHhcCCCCCcc
Q 007694 160 YLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPP-VVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTASAP 238 (593)
Q Consensus 160 ~~llGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~~iggl~~g~~~~~~p~~~~~g~~~~~~~l~~~~~~~~~ 238 (593)
.+++|+++|+++.+|++.+.++.+++.. .++ .....++|++++.+..++|...+.|.+++.+.+++.+...
T Consensus 2 a~~iGii~G~~~~~f~~~i~~~~~~~~~------~~~~~~~~p~~g~~i~~l~~~~~~~~~~g~~~v~~~~~~~~~~~-- 73 (378)
T cd03682 2 ALLIGLLVGSASALFLWSLDWATEFREA------HPWLLPFLPLAGLLIGYLYQKFGKNSEKGNNLIIEEIHGPEEGI-- 73 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHhCcccCCChHHHHHHHHccCCCC--
Confidence 4789999999999999999999887542 122 1223456677777777788777788888887777543211
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCCccceehHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcchHHHHHHHHHHHHHHhc
Q 007694 239 GIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVC 318 (593)
Q Consensus 239 ~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~p~~~~~~~~~~~a~~G~aa~~a~~~ 318 (593)
.. ...+.|++.+.+++++|.|+|+|+|++++|+++|..+++.++. +..+...++.+||+|.+++++
T Consensus 74 ~~----~~~~~k~~~~~l~l~~G~s~G~Egp~v~~ga~~~~~~~~~~~~----------~~~~~r~l~~~g~aAglaa~f 139 (378)
T cd03682 74 PL----RMAPLVLFGTVLTHLFGGSAGREGTAVQMGGSLADAFGRVFKL----------PEEDRRILLIAGIAAGFAAVF 139 (378)
T ss_pred ch----HHHHHHHHHHHHHHHcCCccCCcchHHHHHHHHHHHHHHHhCC----------CHHHHHHHHHHHHHHHHHHHh
Confidence 11 2345699999999999999999999999999999999986532 123567899999999999999
Q ss_pred cchhHHHHHHHHHh--C--CchhHHHHHHHHHHHHHHHHhhc
Q 007694 319 SVPLTSVLLLFELT--R--DYRILLPLMGAVGLAIWVPSVAN 356 (593)
Q Consensus 319 ~apls~~vi~~E~t--g--~~~~~~P~~ia~~ia~~v~~~~~ 356 (593)
|+|++++++++|++ + +++.++|.++++++++.+++.+.
T Consensus 140 ~aPl~g~~f~~E~~~~~~~~~~~~~~~~i~~~~a~~v~~~~~ 181 (378)
T cd03682 140 GTPLAGAIFALEVLVLGRLRYSALIPCLVAAIVADWVSHALG 181 (378)
T ss_pred CCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999987 3 45788899999999999987664
No 26
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.66 E-value=5.8e-16 Score=145.96 Aligned_cols=124 Identities=24% Similarity=0.299 Sum_probs=114.7
Q ss_pred HhhhhhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccc
Q 007694 414 LLEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNT 493 (593)
Q Consensus 414 ~l~~i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~ 493 (593)
.....+++++|++++.++.++++++++.+.+.+.+.+..||+|++ +++|+++.+|+..++.+... +
T Consensus 168 siPk~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~d-k~vGiit~~dI~~aia~g~~-------------~ 233 (294)
T COG2524 168 SIPKEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDDD-KIVGIITLSDIAKAIANGNL-------------D 233 (294)
T ss_pred ecCcchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecCC-ceEEEEEHHHHHHHHHcCCc-------------c
Confidence 356788999999999999999999999999999999999999975 99999999999999877643 4
Q ss_pred cchhhhhccCccccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHHHH
Q 007694 494 CLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLR 568 (593)
Q Consensus 494 ~~V~dim~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~~~ 568 (593)
.+|+|+|++++ +++.+|+.+.||+++|..++..++.|+|. +|+.+|+|||+|+++.+.
T Consensus 234 ~kV~~~M~k~v---------itI~eDe~i~dAir~M~~~nVGRLlV~ds--------~gkpvGiITrTDIL~~ia 291 (294)
T COG2524 234 AKVSDYMRKNV---------ITINEDEDIYDAIRLMNKNNVGRLLVTDS--------NGKPVGIITRTDILTRIA 291 (294)
T ss_pred ccHHHHhccCC---------ceEcCchhHHHHHHHHHhcCcceEEEEcc--------CCcEEEEEehHHHHHHhh
Confidence 68999999987 99999999999999999999999999998 899999999999998765
No 27
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=99.65 E-value=1e-15 Score=165.16 Aligned_cols=194 Identities=16% Similarity=0.154 Sum_probs=138.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cC-CC-------cchHhhhhHHHHHHHHh-hcccccccchh
Q 007694 154 AAELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEK-FG-LP-------PVVCPALGGLGAGIIAL-RYPGILYWGFT 223 (593)
Q Consensus 154 ~~~l~~~~llGv~~Gl~g~~f~~~~~~~~~~~~~~~~~-~~-~~-------~~~~~~iggl~~g~~~~-~~p~~~~~g~~ 223 (593)
...|.+.+++|+++|+.+.+|.+.++++.+++...... .. .+ +...+.+++++.+++.. +.|+..|+|.+
T Consensus 30 ~~~w~l~ilvGi~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~p~a~GsGip 109 (466)
T cd03685 30 FLKWIICLLIGIFTGLVAYFIDLAVENLAGLKFLVVKNYIEKGRLFTAFLVYLGLNLVLVLVAALLVAYIAPTAAGSGIP 109 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHH
Confidence 34456779999999999999999999998775332111 00 01 11345566777777655 45889999999
Q ss_pred hHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHhhccCCccceehHHHHHHHHHHHHHHHHHHH-------HHhhhCCCC
Q 007694 224 NVEEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAE-------IINSAIPGN 296 (593)
Q Consensus 224 ~~~~~l~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~-------~~~~~~p~~ 296 (593)
+++..+++.......+ ....+.|++.+.+++|+|.|.|+|+|++++||++|..+++.... +++. +.
T Consensus 110 ~v~~~l~g~~~~~~l~----~r~~~~K~i~~~l~vgsG~s~GrEGP~v~iGa~ig~~~~~~~~~~~~~~~~~~~~-~~-- 182 (466)
T cd03685 110 EVKGYLNGVKIPHILR----LKTLLVKIVGVILSVSGGLALGKEGPMIHIGACIAAGLSQGGSTSLRLDFRWFRY-FR-- 182 (466)
T ss_pred HHHHHHcCcCccccch----HHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHhhccccccccchhhhhh-cc--
Confidence 9999887433211111 23457899999999999999999999999999999999974210 1111 11
Q ss_pred CCCcchHHHHHHHHHHHHHHhccchhHHHHHHHHHhC---CchhHHHHHHHHHHHHHHHHhh
Q 007694 297 VAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTR---DYRILLPLMGAVGLAIWVPSVA 355 (593)
Q Consensus 297 ~~~~~~~~~a~~G~aa~~a~~~~apls~~vi~~E~tg---~~~~~~P~~ia~~ia~~v~~~~ 355 (593)
+..+...+..|||||++++++|+|+++++|++|.++ +.+...+.++++++|..+++.+
T Consensus 183 -~~~~~r~li~~GaAAGlaaaF~APl~G~lFa~E~l~~~~~~~~~~~~l~~s~ias~va~~~ 243 (466)
T cd03685 183 -NDRDKRDFVTCGAAAGVAAAFGAPVGGVLFSLEEVASFWNQALTWRTFFSSMIVTFTLNFF 243 (466)
T ss_pred -CHHHHHHHHHHHhhcchhhccCCCcceeeeeeehhhhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 124667899999999999999999999999999875 2345556666666665555544
No 28
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=99.62 E-value=3.3e-15 Score=159.70 Aligned_cols=192 Identities=18% Similarity=0.150 Sum_probs=144.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-C------cchHhhhhHHHHHHHHh-hcccccccchhhHHHH
Q 007694 157 LPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGL-P------PVVCPALGGLGAGIIAL-RYPGILYWGFTNVEEI 228 (593)
Q Consensus 157 l~~~~llGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~-~------~~~~~~iggl~~g~~~~-~~p~~~~~g~~~~~~~ 228 (593)
|.+.+++|+++|+.+.+|....++..+++.++-+.... + +...+.+++++.+.+.. +.|+..|+|-+++++.
T Consensus 2 w~~~~l~gv~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp~v~~~ 81 (426)
T cd03683 2 WLFLALLGILMALISIAMDFAVEKLLNARRWLYSLLTGNSLLQYLVWVAYPVALVLFSALFCKYISPQAVGSGIPEMKTI 81 (426)
T ss_pred eEeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHHH
Confidence 45678999999999999999999988777654432111 1 12345566666776664 6899999999999888
Q ss_pred HhcCCCCCcchHHHHHHHHHHHHHHHHHhhccCCccceehHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcchHHHHHH
Q 007694 229 LHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALV 308 (593)
Q Consensus 229 l~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~p~~~~~~~~~~~a~~ 308 (593)
+++.+... +.-...++.|++.+.+++|+|.|.|+|+|++++||++|..+++..+.... ... +..+...+..|
T Consensus 82 l~g~~~~~----~l~~r~~~~k~i~~~l~i~sG~svGrEGP~v~iGa~i~~~~~~~~~~~~~-~~~---~~~~rr~Li~~ 153 (426)
T cd03683 82 LRGVVLPE----YLTFKTLVAKVIGLTCALGSGLPLGKEGPFVHISSIVAALLSKLTTFFSG-IYE---NESRRMEMLAA 153 (426)
T ss_pred HcCCCccc----cccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcccccc-ccc---CHHHHHHHHHh
Confidence 87533211 11234567899999999999999999999999999999999986542100 000 12345579999
Q ss_pred HHHHHHHHhccchhHHHHHHHHHhC-C--chhHHHHHHHHHHHHHHHHhhc
Q 007694 309 GMAATLASVCSVPLTSVLLLFELTR-D--YRILLPLMGAVGLAIWVPSVAN 356 (593)
Q Consensus 309 G~aa~~a~~~~apls~~vi~~E~tg-~--~~~~~P~~ia~~ia~~v~~~~~ 356 (593)
|+||.+++++|||+++++|++|... + .+.+.|.++++++|..+.+.+.
T Consensus 154 GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~i~s~~a~~v~~~~~ 204 (426)
T cd03683 154 ACAVGVACTFGAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCGAFTFRLLA 204 (426)
T ss_pred HhhhhhHHhcCCcceeeEEEeehhhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999754 3 3677899999999988877664
No 29
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=99.62 E-value=6.3e-15 Score=157.70 Aligned_cols=183 Identities=27% Similarity=0.353 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcC--CCcchHhhhhHHHHH--HHHhhcccccccchhhHHHHHhcC
Q 007694 159 LYLILGMLCGVVSVVFTRLVAWFTKSFDFIKE--KFG--LPPVVCPALGGLGAG--IIALRYPGILYWGFTNVEEILHTG 232 (593)
Q Consensus 159 ~~~llGv~~Gl~g~~f~~~~~~~~~~~~~~~~--~~~--~~~~~~~~iggl~~g--~~~~~~p~~~~~g~~~~~~~l~~~ 232 (593)
...++|++.|+..........++...+..... +.. +..++.+.++|++.| +...+.|+..++|-+++.+.+++.
T Consensus 25 ~~~~lgvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~gl~~g~~~~~~~~p~~~g~Gi~~~i~a~~~~ 104 (443)
T COG0038 25 IAAALGVIVGLFAVALDLALLLLGRLRGGLLSAAQAPGPWLLPLVPALGGLLVGALLVYKFAPEARGSGIPQAIEALHGR 104 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHhCccccCCChhHHHHHHhcC
Confidence 34555555555555555555554443321000 111 112234557888888 344577899999999999998875
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHhhccCCccceehHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcchHHHHHHHHHH
Q 007694 233 KTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAA 312 (593)
Q Consensus 233 ~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~p~~~~~~~~~~~a~~G~aa 312 (593)
+.. ..+ ...++|.+.+.+++++|.|.|+++|++++|+++|+.++++++. ...+....+++|+||
T Consensus 105 ~~~--~~~----~~~~vk~~~~~l~i~sG~s~GrEGP~vqiga~~g~~~~~~l~~----------~~~~~r~Ll~~GaAa 168 (443)
T COG0038 105 KGR--ISP----RVLPVKLVATLLTIGSGASLGREGPSVQIGAAIGSLLGRLLKL----------SREDRRILLAAGAAA 168 (443)
T ss_pred CCc--ccH----HHHHHHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHhCC----------CHHHHHHHHHHHHHH
Confidence 322 111 3345699999999999999999999999999999999988743 235789999999999
Q ss_pred HHHHhccchhHHHHHHHHHhC----CchhHHHHHHHHHHHHHHHHhhcc
Q 007694 313 TLASVCSVPLTSVLLLFELTR----DYRILLPLMGAVGLAIWVPSVANQ 357 (593)
Q Consensus 313 ~~a~~~~apls~~vi~~E~tg----~~~~~~P~~ia~~ia~~v~~~~~~ 357 (593)
.+++++|+|+++++|++|+-. .+..+.|+++++++|+.+...++.
T Consensus 169 GlaaaF~aPlagvlF~~E~l~~~~~~~~~l~p~~vaa~va~~v~~~~~~ 217 (443)
T COG0038 169 GLAAAFNAPLAGALFAIEVLYGRFLEYRALVPVLVAAVVALLVAGLFGG 217 (443)
T ss_pred HHHHHhCCcHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999753 357899999999999999888854
No 30
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.60 E-value=8.9e-15 Score=154.60 Aligned_cols=175 Identities=19% Similarity=0.191 Sum_probs=135.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh------hcCCC---cchHhhhhHHHHHHHHhhcccccccchhhHHHHHhcCCC
Q 007694 164 GMLCGVVSVVFTRLVAWFTKSFDFIKE------KFGLP---PVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKT 234 (593)
Q Consensus 164 Gv~~Gl~g~~f~~~~~~~~~~~~~~~~------~~~~~---~~~~~~iggl~~g~~~~~~p~~~~~g~~~~~~~l~~~~~ 234 (593)
|+++|+.+.+|.+++++.++++-.... ....+ .++.+.+||++++++..+.+ ..++|-+++++.+++...
T Consensus 1 G~~~gl~a~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ggl~~~l~~~~~~-~~g~gi~~v~~~~~~~~~ 79 (388)
T cd01033 1 GVGAGLGGGLLTLLLHGVQHLAFGYSEGSFLTGVAAVSPIRRALSLTVGGLIAGLGWYLLR-RKGKKLVSIKQAVRGKKR 79 (388)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCccccchhhhccCChHHHHHHHHHHHHHHHHHHHHHh-ccCCCcccHHHHhcCCCC
Confidence 688999999999999998887543211 01122 23446788888887754444 468888888887765421
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhhccCCccceehHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcchHHHHHHHHHHHH
Q 007694 235 ASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATL 314 (593)
Q Consensus 235 ~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~p~~~~~~~~~~~a~~G~aa~~ 314 (593)
.+.+ -.+.|++.+.+|+|+|.|.|+|+|+.++|+++|+.+++.++. +..+...+..||++|.+
T Consensus 80 ---~~~~----~~~~k~~~~~l~ig~G~s~G~EGP~v~iGa~i~~~~~~~~~~----------~~~~~r~li~~GaaAGl 142 (388)
T cd01033 80 ---MPFW----ETIIHAVLQIVTVGLGAPLGREVAPREVGALLAQRFSDWLGL----------TVADRRLLVACAAGAGL 142 (388)
T ss_pred ---CCHH----HHHHHHHHHHhhhhcCCCcCcccHHHHHHHHHHHHHHHHhCC----------CHHHHHHHHHHHHHHHH
Confidence 2222 234699999999999999999999999999999999887643 22467789999999999
Q ss_pred HHhccchhHHHHHHHHHhC---CchhHHHHHHHHHHHHHHHHhhc
Q 007694 315 ASVCSVPLTSVLLLFELTR---DYRILLPLMGAVGLAIWVPSVAN 356 (593)
Q Consensus 315 a~~~~apls~~vi~~E~tg---~~~~~~P~~ia~~ia~~v~~~~~ 356 (593)
++++|+|+++++|++|... +.+.+.|.++++++|+.+++.+.
T Consensus 143 aa~F~aPlaG~lFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~~ 187 (388)
T cd01033 143 AAVYNVPLAGALFALEILLRTISLRSVVAALATSAIAAAVASLLK 187 (388)
T ss_pred HHHhCCchHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999753 45788999999999999988773
No 31
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=99.58 E-value=9.7e-15 Score=155.73 Aligned_cols=187 Identities=20% Similarity=0.208 Sum_probs=137.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-------cchHhhhhHHHHHHHHh-hcccccccchhhHHHHHhcCCCC
Q 007694 164 GMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLP-------PVVCPALGGLGAGIIAL-RYPGILYWGFTNVEEILHTGKTA 235 (593)
Q Consensus 164 Gv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~-------~~~~~~iggl~~g~~~~-~~p~~~~~g~~~~~~~l~~~~~~ 235 (593)
|++.|+++.+|...+++..++++.+-++.... +...+.+++++.+.+.. +.|+..|+|-++++..+++.+..
T Consensus 1 ~~~~Glv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp~v~~~l~g~~~~ 80 (416)
T cd01036 1 GLLMGLVAVVLDYAVESSLDAGQWLLRRIPGSYLLGYLMWVLWSVVLVLISSGICLYFAPQAAGSGIPEVMAYLNGVHLP 80 (416)
T ss_pred CeeehHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHcCCccc
Confidence 57788888899988888888776544321111 12334455555555544 78999999999999888643221
Q ss_pred CcchHHHHHHHHHHHHHHHHHhhccCCccceehHHHHHHHHHHHHHHHHHHHHHh------hhCCCCCCCcchHHHHHHH
Q 007694 236 SAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIIN------SAIPGNVAVAEPQAYALVG 309 (593)
Q Consensus 236 ~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~------~~~p~~~~~~~~~~~a~~G 309 (593)
.... ....+.|++.+.+++|+|.|.|+|+|++++||++|..+++.++...+ ..+. +..+...+..||
T Consensus 81 ~~l~----~~~~~~K~i~~~l~igsG~svGrEGP~V~iGa~ig~~l~~~~~~~~~~~~~~~~~~~---~~~~~r~ll~aG 153 (416)
T cd01036 81 MYLS----IRTLIAKTISCICAVASGLPLGKEGPLVHLGAMIGAGLLQGRSRTLGCHVHLFQLFR---NPRDRRDFLVAG 153 (416)
T ss_pred cccc----HHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcccccccccchhhhcc---CHHHHHHHHHHH
Confidence 1111 23456899999999999999999999999999999999986542110 0001 224677899999
Q ss_pred HHHHHHHhccchhHHHHHHHHHhCC---chhHHHHHHHHHHHHHHHHhhcc
Q 007694 310 MAATLASVCSVPLTSVLLLFELTRD---YRILLPLMGAVGLAIWVPSVANQ 357 (593)
Q Consensus 310 ~aa~~a~~~~apls~~vi~~E~tg~---~~~~~P~~ia~~ia~~v~~~~~~ 357 (593)
++|.++++++||++++++++|.+.. ...+.|.++++++|..+.+.+..
T Consensus 154 aaAGlaAaF~APiaGvlFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~~~ 204 (416)
T cd01036 154 AAAGVASAFGAPIGGLLFVLEEVSTFFPVRLAWRVFFAALVSAFVIQIYNS 204 (416)
T ss_pred hhcchhhccCCcceeeeeeeHHhhccccHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999998743 35788999999999999877743
No 32
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=99.57 E-value=4e-14 Score=152.09 Aligned_cols=180 Identities=18% Similarity=0.159 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchHhhhhHHHHHHHH-hhcccccccchhhHHHHHhcCCCCCcchHHH
Q 007694 164 GMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIA-LRYPGILYWGFTNVEEILHTGKTASAPGIWL 242 (593)
Q Consensus 164 Gv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iggl~~g~~~-~~~p~~~~~g~~~~~~~l~~~~~~~~~~~~~ 242 (593)
|+++|+++..+....+|+...+...-+. .-+...+.+++++++.+. .+.|...|+|-++++..++........+
T Consensus 1 g~~~g~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~l~~~~~p~a~GsGIp~v~~~l~g~~~~~~~~--- 75 (445)
T cd03684 1 GIAIGLIAGLIDIIASWLSDLKEGYCNY--IIYVLLALLFAFIAVLLVKVVAPYAAGSGIPEIKTILSGFIIRGFLG--- 75 (445)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHhcCccccCCCHHHHHHHHcCcccccccc---
Confidence 6889999999999988888766432110 011223445566666665 5679999999999998886432211111
Q ss_pred HHHHHHHHHHHHHHhhccCCccceehHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcchHHHHHHHHHHHHHHhccchh
Q 007694 243 LTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPL 322 (593)
Q Consensus 243 l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~p~~~~~~~~~~~a~~G~aa~~a~~~~apl 322 (593)
....+.|++.+.+++++|.|.|+++|++++||++|+.++++++..- . +..+...+..||+||.+++++++|+
T Consensus 76 -~~~~~~k~l~~~l~i~~G~s~GrEGP~v~iGa~ia~~l~~~~~~~~-----~--~~~~~r~li~~GaaAGlaAaF~APi 147 (445)
T cd03684 76 -KWTLLIKSVGLVLAVASGLSLGKEGPLVHIATCVGNIISRLFPKYR-----R--NEAKRREILSAAAAAGVAVAFGAPI 147 (445)
T ss_pred -HHHHHHHHHhhHHhhccCCcCCCCCCcchHHHHHHHHHHHHHHHhc-----c--CHHHHHHHHHHHHhhhhHHhcCCcc
Confidence 2345789999999999999999999999999999999998764311 0 2346788999999999999999999
Q ss_pred HHHHHHHHHh-C--CchhHHHHHHHHHHHHHHHHhhc
Q 007694 323 TSVLLLFELT-R--DYRILLPLMGAVGLAIWVPSVAN 356 (593)
Q Consensus 323 s~~vi~~E~t-g--~~~~~~P~~ia~~ia~~v~~~~~ 356 (593)
++++|++|.. . +.+.+.|.++++++|..+.+.++
T Consensus 148 ~G~lFalE~l~~~~~~~~l~~~~~as~~a~~v~~~~~ 184 (445)
T cd03684 148 GGVLFSLEEVSYYFPLKTLWRSFFCALVAAFTLKSLN 184 (445)
T ss_pred chhhhhhHhhhhhccHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999964 3 34678899999999999988764
No 33
>PRK03655 putative ion channel protein; Provisional
Probab=99.53 E-value=4.3e-13 Score=142.12 Aligned_cols=179 Identities=15% Similarity=0.180 Sum_probs=126.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hcCC-Ccc--hHhhhhHHHHHHHHhhcccccccchhhHHH
Q 007694 155 AELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKE----KFGL-PPV--VCPALGGLGAGIIALRYPGILYWGFTNVEE 227 (593)
Q Consensus 155 ~~l~~~~llGv~~Gl~g~~f~~~~~~~~~~~~~~~~----~~~~-~~~--~~~~iggl~~g~~~~~~p~~~~~g~~~~~~ 227 (593)
.-+...+++|+++|+.+++|.+++.+.++++-.... .... ++| ..+.++|+++|++..+.|..-++ ...++.
T Consensus 11 ~l~~~ailvG~~aGl~a~lf~~li~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gGllvgll~~~~~~~~G~-~~~~~~ 89 (414)
T PRK03655 11 LLSLPALAIGIASSLILIVVMKIASVLQNLLWQRLPGTLGIAQDSPLWIIGMLTLTGIAVGLVIRFSPGHAGP-DPATEP 89 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccchHHHHHHHHHHHHHHHHHHHcCCCCCC-hHHHHH
Confidence 345678999999999999999999999887532111 0011 122 33668899999988777755444 222233
Q ss_pred HHhcCCCCCcchHHHHHHHHHHHHHHHHHhhccCCccceehHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcchHHHHH
Q 007694 228 ILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYAL 307 (593)
Q Consensus 228 ~l~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~p~~~~~~~~~~~a~ 307 (593)
. +.++ .+. .....|++.+.+++++|.|.|+|+|++++||++|+.+++.+. +. .+......
T Consensus 90 ~-~~~~--~~~------~~~~~~~~~~~l~l~~G~S~GrEGP~VqiGa~igs~~~r~~~-------~~----~~~~~l~~ 149 (414)
T PRK03655 90 L-IGAP--VPP------SALPGLLLALILGLAGGVSLGPEHPIMTVNIALAVAIGARLL-------PR----VNRMDWTI 149 (414)
T ss_pred H-hcCC--CCc------cHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhc-------cC----CChhHHHH
Confidence 3 3221 111 234568999999999999999999999999999999997652 11 24455788
Q ss_pred HHHHHHHHHhccchhHHHHHHHHH-hCCch------hHHHHHHHHHHHHHHHHhh
Q 007694 308 VGMAATLASVCSVPLTSVLLLFEL-TRDYR------ILLPLMGAVGLAIWVPSVA 355 (593)
Q Consensus 308 ~G~aa~~a~~~~apls~~vi~~E~-tg~~~------~~~P~~ia~~ia~~v~~~~ 355 (593)
||+||.+++++|+|+++++|++|. .+++. .+.|+ ++++++..++..+
T Consensus 150 ~gaAaGiaAaFnaPLaG~lFa~E~l~~~~~~~~~~~~~~~v-~aa~~a~~v~~~~ 203 (414)
T PRK03655 150 LASAGTIGALFGTPVAAALIFSQTLNGSNEVPLWDRLFAPL-MAAAAGALTTGLF 203 (414)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHHHHHh
Confidence 999999999999999999999996 45543 34444 4555577666555
No 34
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.52 E-value=1.6e-13 Score=145.56 Aligned_cols=178 Identities=25% Similarity=0.234 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCc-chHhhhhHHHHHHHHhhcccccccchhhHHHHHhcCCCCCcchHHHHHHH
Q 007694 168 GVVSVVFTRLVAWFTKSFDFIKEKFGLPP-VVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTASAPGIWLLTQL 246 (593)
Q Consensus 168 Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~~iggl~~g~~~~~~p~~~~~g~~~~~~~l~~~~~~~~~~~~~l~~~ 246 (593)
|+.+..|.+++++.++++....+..++.. .+.+.+++++.+++..+.|+..|+|.+++.+.++.......+. ..-...
T Consensus 1 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~gsGi~~v~~~~~~~~~~~~~~-~~~~r~ 79 (390)
T cd01034 1 GLVALLFAKLADLALALFQRLTATHPWLPLLLTPAGFALIAWLTRRFFPGAAGSGIPQVIAALELPSAAARRR-LLSLRT 79 (390)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHcccccccccc-cccHHH
Confidence 56788899999988887765543222111 1234445555555556678888999999998887533211111 111244
Q ss_pred HHHHHHHHHHhhccCCccceehHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcchHHHHHHHHHHHHHHhccchhHHHH
Q 007694 247 AAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPLTSVL 326 (593)
Q Consensus 247 ~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~p~~~~~~~~~~~a~~G~aa~~a~~~~apls~~v 326 (593)
.+.|++.+.+|+++|.|.|+|+|++++|+++|+.+++.++. . ...+...+..||++|.+++++++|+++++
T Consensus 80 ~~~k~i~~~l~i~~G~s~GrEGP~v~iga~i~~~~~~~~~~------~---~~~~~r~li~~GaaAGlaa~F~aPlaG~l 150 (390)
T cd01034 80 AVGKILLTLLGLLGGASVGREGPSVQIGAAVMLAIGRRLPK------W---GGLSERGLILAGGAAGLAAAFNTPLAGIV 150 (390)
T ss_pred HHHHHHHHHHHHHcCCCcCCcccHHHHHHHHHHHHHHHccc------C---chHHHHHHHHHHHHHhHHHHhCCcchhHH
Confidence 67899999999999999999999999999999999987543 1 12467889999999999999999999999
Q ss_pred HHHHHhC---CchhHHHHHHHHHHHHHHHHhh
Q 007694 327 LLFELTR---DYRILLPLMGAVGLAIWVPSVA 355 (593)
Q Consensus 327 i~~E~tg---~~~~~~P~~ia~~ia~~v~~~~ 355 (593)
|.+|... +.+...|+++++++|.++++.+
T Consensus 151 F~~E~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 182 (390)
T cd01034 151 FAIEELSRDFELRFSGLVLLAVIAAGLVSLAV 182 (390)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999764 2357778999999988887665
No 35
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.52 E-value=8.8e-14 Score=144.14 Aligned_cols=125 Identities=24% Similarity=0.328 Sum_probs=109.2
Q ss_pred HHhh---hhhhhhhhccC--ceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCc
Q 007694 413 MLLE---ELKVSRAMSKD--FVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSI 487 (593)
Q Consensus 413 ~~l~---~i~v~~~M~~~--~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~ 487 (593)
..+. .++|+++|+++ +.++++++++.++.+.|.+.+...+||+|++++++|+|+.+|+.+.+.....
T Consensus 189 ~~l~~~~~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~~~-------- 260 (321)
T PRK11543 189 GALGARLLNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGGGA-------- 260 (321)
T ss_pred CHHHHHHHhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCCCC--------
Confidence 4566 78999999998 9999999999999999988888899999999999999999999876543221
Q ss_pred cccccccchhhhhccCccccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHH
Q 007694 488 ASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNC 566 (593)
Q Consensus 488 ~~~~~~~~V~dim~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~ 566 (593)
...+++++|.+++ .++.+++++.++++.|.+++.+++||||+ +++++|+||++|++++
T Consensus 261 ----~~~~v~~im~~~~---------~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--------~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 261 ----LTTPVNEAMTRGG---------TTLQAQSRAIDAKEILMKRKITAAPVVDE--------NGKLTGAINLQDFYQA 318 (321)
T ss_pred ----cCCcHHHhcCCCC---------EEECCCCCHHHHHHHHHHcCCCEEEEEcC--------CCeEEEEEEHHHHHhc
Confidence 1246889998866 88999999999999999999999999997 6899999999999864
No 36
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.49 E-value=2.1e-13 Score=141.59 Aligned_cols=122 Identities=20% Similarity=0.331 Sum_probs=105.9
Q ss_pred hhhhhhhhhcc--CceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccc
Q 007694 416 EELKVSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNT 493 (593)
Q Consensus 416 ~~i~v~~~M~~--~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~ 493 (593)
..++++++|++ ++.++++++++.++.+.|.+.+...+||+|++++++|+|+.+|+++.+..... ...
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~~~~-----------~~~ 268 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDMGID-----------LRQ 268 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhcCCC-----------ccc
Confidence 67889999997 89999999999999999988888888888988999999999999876543211 123
Q ss_pred cchhhhhccCccccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHH
Q 007694 494 CLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNC 566 (593)
Q Consensus 494 ~~V~dim~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~ 566 (593)
.+++|+|.+++ .++.+++++.++++.|.+++.+++||+| +++++|+||++|+++.
T Consensus 269 ~~v~~im~~~~---------~~v~~~~~l~~a~~~m~~~~~~~lpVv~---------~~~lvGiit~~dil~~ 323 (326)
T PRK10892 269 ASIADVMTPGG---------IRVRPGILAVDALNLMQSRHITSVLVAD---------GDHLLGVLHMHDLLRA 323 (326)
T ss_pred CCHHHhcCCCC---------EEECCCCCHHHHHHHHHHCCCcEEEEee---------CCEEEEEEEhHHhHhc
Confidence 47999998876 8999999999999999999999999998 4799999999999864
No 37
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.47 E-value=2.6e-13 Score=118.81 Aligned_cols=123 Identities=20% Similarity=0.297 Sum_probs=107.5
Q ss_pred hhhhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccc
Q 007694 416 EELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCL 495 (593)
Q Consensus 416 ~~i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~ 495 (593)
..++++++|+++++.+.+++++.++.++|++.+++.+||+++ ++++|-|+.+++.+.+.+... +..+.+
T Consensus 63 ~~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~e----------~i~~~~ 131 (187)
T COG3620 63 TRITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGME----------SIRSLR 131 (187)
T ss_pred ceEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhcccc----------chhhhh
Confidence 678899999999999999999999999999999999999986 899999999999988655432 234678
Q ss_pred hhhhhccCccccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHHHHH
Q 007694 496 VSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLRE 569 (593)
Q Consensus 496 V~dim~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~~~~ 569 (593)
++++|...+ ++|++|.+++.+.++++.++ .+.|++ +|+++||||+.|+++.+++
T Consensus 132 vr~vM~e~f---------P~Vs~~~~l~vI~~LL~~~~--AVlV~e---------~G~~vGIITk~DI~k~~~~ 185 (187)
T COG3620 132 VREVMGEPF---------PTVSPDESLNVISQLLEEHP--AVLVVE---------NGKVVGIITKADIMKLLAG 185 (187)
T ss_pred HHHHhcCCC---------CcCCCCCCHHHHHHHHhhCC--eEEEEe---------CCceEEEEeHHHHHHHHhc
Confidence 999999877 89999999999999997765 466776 6999999999999988763
No 38
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.45 E-value=7.4e-13 Score=114.62 Aligned_cols=109 Identities=17% Similarity=0.215 Sum_probs=92.1
Q ss_pred CceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCccc
Q 007694 427 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 506 (593)
Q Consensus 427 ~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 506 (593)
++.++++++++.++.+.|.+.+...+||+|++++++|+++..|+.+..... ....++.++|..++
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~-------------~~~~~v~~~~~~~~-- 66 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGPND-------------YETLKVCEVYIVPV-- 66 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhcccc-------------ccccChhheeecCC--
Confidence 356789999999999999888888999999889999999999987642111 01236788887655
Q ss_pred cCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 507 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 507 ~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
.++.+++++.+++++|.+++.+.+||+|+ +|+++|+||++|+++
T Consensus 67 -------~~v~~~~~l~~al~~m~~~~~~~lpVvd~--------~~~~~Giit~~di~~ 110 (111)
T cd04603 67 -------PIVYCDSKVTDLLRIFRETEPPVVAVVDK--------EGKLVGTIYERELLR 110 (111)
T ss_pred -------cEECCCCcHHHHHHHHHHcCCCeEEEEcC--------CCeEEEEEEhHHhhc
Confidence 78999999999999999999999999997 789999999999875
No 39
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.45 E-value=6.5e-13 Score=142.52 Aligned_cols=129 Identities=19% Similarity=0.199 Sum_probs=113.4
Q ss_pred hhHHHHHHhhhhhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCC
Q 007694 407 SEAAEEMLLEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDS 486 (593)
Q Consensus 407 ~~~~~~~~l~~i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~ 486 (593)
....+...++.+++.++|.+++.++++++++.++.+.|.+.+...+||+|++++++|+|+.+|+... .
T Consensus 78 ~~~~q~~~l~~VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~----~-------- 145 (479)
T PRK07807 78 PIDVVAEVVAWVKSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGV----D-------- 145 (479)
T ss_pred CHHHHHHHHhhcccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcC----c--------
Confidence 3445567788999999999999999999999999999999999999999999999999999998432 0
Q ss_pred ccccccccchhhhhccCccccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHH
Q 007694 487 IASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNC 566 (593)
Q Consensus 487 ~~~~~~~~~V~dim~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~ 566 (593)
...+++|+|++++ .++++++++.+|+++|.+++.+++||+|+ +++++|+||++|+++.
T Consensus 146 -----~~~~V~diMt~~~---------itV~~d~sL~eAl~lM~~~~i~~LPVVD~--------~g~lvGIIT~~DIl~~ 203 (479)
T PRK07807 146 -----RFTQVRDVMSTDL---------VTLPAGTDPREAFDLLEAARVKLAPVVDA--------DGRLVGVLTRTGALRA 203 (479)
T ss_pred -----cCCCHHHhccCCc---------eEECCCCcHHHHHHHHHhcCCCEEEEEcC--------CCeEEEEEEHHHHHHH
Confidence 1236889998766 89999999999999999999999999997 7899999999999986
Q ss_pred HHH
Q 007694 567 LRE 569 (593)
Q Consensus 567 ~~~ 569 (593)
...
T Consensus 204 ~~~ 206 (479)
T PRK07807 204 TIY 206 (479)
T ss_pred hhC
Confidence 653
No 40
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.45 E-value=1e-12 Score=114.29 Aligned_cols=111 Identities=23% Similarity=0.409 Sum_probs=94.4
Q ss_pred ceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCcccc
Q 007694 428 FVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISYR 507 (593)
Q Consensus 428 ~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~~ 507 (593)
+.++++++++.++.+.|.+.++..+||+|++++++|+++.+|+.+.+..... .....+++++|.+++
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~~----------~~~~~~v~~~~~~~~--- 69 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCGG----------PGCTAPVENVMTRAV--- 69 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcCC----------CcccCCHHHHhcCCC---
Confidence 4578899999999999998889999999999999999999999876533111 012347888887765
Q ss_pred CCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 508 GRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 508 ~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
.++++++++.++++.|.+++.+++||+|+ +|+++|+||++|+++
T Consensus 70 ------~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--------~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 70 ------VSCRPGDLLHDVWQVMKQRGLKNIPVVDE--------NARPLGVLNARDALK 113 (114)
T ss_pred ------eeECCCCCHHHHHHHHHHcCCCeEEEECC--------CCcEEEEEEhHhhcc
Confidence 88999999999999999999999999997 689999999999864
No 41
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.43 E-value=1.8e-12 Score=113.49 Aligned_cols=116 Identities=17% Similarity=0.218 Sum_probs=93.3
Q ss_pred CceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCccc
Q 007694 427 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 506 (593)
Q Consensus 427 ~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 506 (593)
++.++++++++.++.+.|...+...+||+|++++++|+++..|+.+....... ....++.++|.+.
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~~~-----------~~~~~~~~~~~~~--- 67 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGAD-----------LQKVPVGVIMTRM--- 67 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcCCC-----------ccCCCHHHHhCCC---
Confidence 45788999999999999988888999999988999999999999887543221 1234677888641
Q ss_pred cCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 507 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 507 ~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
..+.++++++++.+++++|.+++.+.+||+|++. +.++++|+||++|+.+
T Consensus 68 ----~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~-----~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 68 ----PNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVD-----EGLEVIGRITKTNITK 117 (118)
T ss_pred ----CCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCC-----ccceEEEEEEhhheec
Confidence 0137999999999999999999999999999720 0169999999999864
No 42
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.42 E-value=2.2e-12 Score=112.18 Aligned_cols=113 Identities=27% Similarity=0.421 Sum_probs=94.1
Q ss_pred CceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCccc
Q 007694 427 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 506 (593)
Q Consensus 427 ~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 506 (593)
++.++.+++++.++.+.|.+.+...+||+|++++++|+++.+|+...+.+... ....++.++|.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~-----------~~~~~~~~~~~~~~-- 68 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADEA-----------GEPSAVDEVATPPL-- 68 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhcccc-----------cccccHHHhccCCc--
Confidence 46688999999999999998888999999988999999999999886543221 11234777877655
Q ss_pred cCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 507 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 507 ~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
.++.+++++.++++.|.+++.+.+||+|++. +++++|+||++|+++
T Consensus 69 -------~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~------~~~~~Gvit~~di~~ 114 (115)
T cd04593 69 -------LTVHPDEPLAHALDRMASRGLRQLPVVDRGN------PGQVLGLLTRENVLL 114 (115)
T ss_pred -------eEECCCCCHHHHHHHHHHcCCceeeEEeCCC------CCeEEEEEEhHHhhc
Confidence 8899999999999999999999999999721 279999999999875
No 43
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.41 E-value=3.5e-12 Score=110.76 Aligned_cols=111 Identities=24% Similarity=0.380 Sum_probs=94.1
Q ss_pred CceEecCCCCHHHHHHHHHhcCCcEEEEEeCC-CeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCcc
Q 007694 427 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGE-DFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGIS 505 (593)
Q Consensus 427 ~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~-~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~ 505 (593)
++..+++++++.++++.|.+.+.+.+||+|++ ++++|+++.+|+++.+.+... +....+++++|.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~----------~~~~~~v~~~~~~~~- 70 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGR----------DPDRVNVYEIMTKPL- 70 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCC----------CCCccCHHHHhcCCC-
Confidence 56789999999999999988888899999987 899999999999886543221 112347888887655
Q ss_pred ccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 506 YRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 506 ~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
.++++++++.++++.|.+.+.+.+||+| +|+++|+||++|+++
T Consensus 71 --------~~v~~~~~l~~~~~~~~~~~~~~~~Vvd---------~~~~~Gvi~~~dl~~ 113 (114)
T cd04630 71 --------ISVSPDMDIKYCARLMERTNIRRAPVVE---------NNELIGIISLTDIFL 113 (114)
T ss_pred --------eeECCCCCHHHHHHHHHHcCCCEeeEee---------CCEEEEEEEHHHhhc
Confidence 8999999999999999999999999998 478999999999875
No 44
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.40 E-value=2.1e-12 Score=114.35 Aligned_cols=113 Identities=20% Similarity=0.175 Sum_probs=94.9
Q ss_pred cCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCcc
Q 007694 426 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGIS 505 (593)
Q Consensus 426 ~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~ 505 (593)
+++.++++++++.++.+.|.+.+...+||+|++++++|+++.+|+.+.+.++.. ..+.+++++|.+++
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~-----------~~~~~v~~im~~~~- 69 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKV-----------QPSDPVSKALYKQF- 69 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhcc-----------CCCCcHHHHhhccc-
Confidence 457789999999999999998888999999988999999999999876554332 12358999999876
Q ss_pred ccCCCCcceEecCCCCHHHHHHHHHHc---------CCcccceeecchhhhhccCCeEEEEEehhhHHHH
Q 007694 506 YRGRERGLLTCYPDTDLAIAKELMEAK---------GIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNC 566 (593)
Q Consensus 506 ~~~~~~~~~~v~~~~~l~~a~~~~~~~---------~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~ 566 (593)
.++.+++++.++.+++.+. +..++||+|+ +|+++|+||++|++++
T Consensus 70 --------~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~--------~~~~~Givt~~Dl~~~ 123 (124)
T cd04608 70 --------KRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEK--------QEKPIGIVTKIDLLSY 123 (124)
T ss_pred --------eecCCCCCHHHHHhhcccCCceEEEecccccccccccc--------ccceEEEEehhHhhhh
Confidence 8899999999999965433 5678889986 7899999999999875
No 45
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.39 E-value=2.2e-12 Score=109.13 Aligned_cols=94 Identities=21% Similarity=0.272 Sum_probs=83.8
Q ss_pred CceEecCCCCHHHHHHHHHhcCCcEEEEEeCC-CeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCcc
Q 007694 427 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGE-DFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGIS 505 (593)
Q Consensus 427 ~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~-~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~ 505 (593)
.+.++++++++.++.+.|.+.+++.+||+|++ ++++|+++.+|+.+.+. +
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~----------------------------~- 52 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR----------------------------L- 52 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee----------------------------e-
Confidence 36789999999999999999999999999975 79999999999876410 2
Q ss_pred ccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccC-CeEEEEEehhhHHH
Q 007694 506 YRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRK-QRIVAILHYDSIWN 565 (593)
Q Consensus 506 ~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~-~~lvGiIt~~di~~ 565 (593)
.++.+++++.+++++|.+++.+++||+|+ + |+++|+||++|+++
T Consensus 53 --------~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--------~~~~~~giit~~d~~~ 97 (98)
T cd04618 53 --------VSIHPERSLFDAALLLLKNKIHRLPVIDP--------STGTGLYILTSRRILK 97 (98)
T ss_pred --------EEeCCCCcHHHHHHHHHHCCCCEeeEEEC--------CCCCceEEeehhhhhc
Confidence 68899999999999999999999999997 5 89999999999875
No 46
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=99.39 E-value=1.8e-12 Score=135.78 Aligned_cols=139 Identities=30% Similarity=0.379 Sum_probs=111.2
Q ss_pred hhHHHHHHHHhhc-ccccccchhhHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHhhccCCccceehHHHHHHHHHHHH
Q 007694 202 LGGLGAGIIALRY-PGILYWGFTNVEEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAV 280 (593)
Q Consensus 202 iggl~~g~~~~~~-p~~~~~g~~~~~~~l~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~ 280 (593)
++|++++++..++ |+..++|-+++++.++..+.. . -....+.|++.+.+|+++|.|.|+|+|+.++|+++|+.
T Consensus 1 ~~~~~~~~l~~~~~p~~~g~Gi~~v~~~~~~~~~~--~----~~~~~~~k~~~~~~s~~~G~s~G~EGp~v~iga~i~~~ 74 (355)
T PF00654_consen 1 IGGLLSGLLWKKFAPEAAGSGIPEVKAALRGKSGR--L----PFRTLPVKFVGSILSLGSGLSVGREGPSVQIGAAIGSW 74 (355)
T ss_dssp -HHHHHHHHHHHC-GGGSB-SHHHHHHHCTTSS---------HHHHHHHHHHHHHHHHHTT-S-BSHHHHHHHHHHHHHH
T ss_pred CEEEEeeHHHHHHCCccCCCCHHHHHHHHhCCCCC--C----CHHHHHHHHHHHHHHHhcCCCCcCccHHHHHHHHHHHH
Confidence 4677888887777 999999999999888764421 1 23456789999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhCCCCCCCcc-hHHHHHHHHHHHHHHhccchhHHHHHHHHHhC---CchhHHHHHHHHHHHHHHHHhhc
Q 007694 281 FGGSAAEIINSAIPGNVAVAE-PQAYALVGMAATLASVCSVPLTSVLLLFELTR---DYRILLPLMGAVGLAIWVPSVAN 356 (593)
Q Consensus 281 ~g~~~~~~~~~~~p~~~~~~~-~~~~a~~G~aa~~a~~~~apls~~vi~~E~tg---~~~~~~P~~ia~~ia~~v~~~~~ 356 (593)
+++.++. + ..+ ...+..||++|.+++++++|++++++++|... +...+.|.++++++++.+.+.+.
T Consensus 75 ~~~~~~~------~----~~~~~r~l~~~g~aAglaa~F~aPlaG~lFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~~ 144 (355)
T PF00654_consen 75 LGRRFRL------S----RNETRRLLLAAGAAAGLAAAFNAPLAGVLFALEELSRDFSVRLLLPALVASIVATLVSRLLF 144 (355)
T ss_dssp HHHHTT------------CHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHCCTCHCCSTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcc------c----chHHHhHHHHHHHHHHHHHHhcCCcccceehhheeeccccchhhHHHHHHHHHHHHHHHHHc
Confidence 9987543 1 123 56699999999999999999999999999754 56899999999999999998884
No 47
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.39 E-value=6.2e-12 Score=108.26 Aligned_cols=108 Identities=29% Similarity=0.444 Sum_probs=93.0
Q ss_pred cCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCcc
Q 007694 426 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGIS 505 (593)
Q Consensus 426 ~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~ 505 (593)
+++.++++++++.++.+.+.+.+...+||+|++++++|+++.+++.+.+.... .++.++|.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~---------------~~~~~~~~~~~- 65 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVARDK---------------KSVEDIMTRNV- 65 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHhhCc---------------cCHHHhcCCCC-
Confidence 56778999999999999999888899999998899999999999977643221 24777776655
Q ss_pred ccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 506 YRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 506 ~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
.++.++++++++++.|.+.+.+.+||+++ +++++|+||++|+.+
T Consensus 66 --------~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--------~~~~~G~v~~~di~~ 109 (110)
T cd04605 66 --------ITATPDEPIDVAARKMERHNISALPVVDA--------ENRVIGIITSEDISK 109 (110)
T ss_pred --------eEECCCCcHHHHHHHHHHhCCCEEeEECC--------CCcEEEEEEHHHhhh
Confidence 78999999999999999999999999997 789999999999864
No 48
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=4.1e-12 Score=111.50 Aligned_cols=117 Identities=15% Similarity=0.240 Sum_probs=90.6
Q ss_pred CceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhh-ccCcc
Q 007694 427 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSIC-TRGIS 505 (593)
Q Consensus 427 ~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim-~~~~~ 505 (593)
++.++++++++.++.+.|.+++.+.+||+|++++++|+++.+|+...+.++.... ...++.+.+ .++.
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~~~----------~~~~~~~~~~~~~~- 70 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYNN----------LDLTVGEALERRSQ- 70 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCcccc----------ccCCHHHHHhhccc-
Confidence 5678999999999999999999999999998999999999999987654332200 001222211 1110
Q ss_pred ccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 506 YRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 506 ~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
....+.++++++++.++++.|.+.+.+.+||+|+ +++++|+||++|+++
T Consensus 71 ---~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~--------~~~~~Givt~~di~~ 119 (120)
T cd04641 71 ---DFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDE--------NKRVEGIISLSDILQ 119 (120)
T ss_pred ---CCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECC--------CCCEEEEEEHHHhhc
Confidence 0112378999999999999999999999999997 689999999999875
No 49
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.39 E-value=2.5e-12 Score=138.62 Aligned_cols=126 Identities=19% Similarity=0.327 Sum_probs=108.2
Q ss_pred HHhhhhhhhhhhccCceEecCCCCHHHHHHHHHh-----cCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCc
Q 007694 413 MLLEELKVSRAMSKDFVKVALTVTLKEAIESMKD-----GQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSI 487 (593)
Q Consensus 413 ~~l~~i~v~~~M~~~~~~v~~~~~v~~~~~~l~~-----~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~ 487 (593)
..+...+++++|++++.+++++++++++.+.+++ .....+||+|++++++|+++.+|+... .
T Consensus 126 l~~~e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a---~---------- 192 (449)
T TIGR00400 126 LSYSDDSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILA---K---------- 192 (449)
T ss_pred hCCCcchHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcC---C----------
Confidence 3455678999999999999999999999999975 234678999988999999999998542 1
Q ss_pred cccccccchhhhhccCccccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHHH
Q 007694 488 ASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCL 567 (593)
Q Consensus 488 ~~~~~~~~V~dim~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~~ 567 (593)
.+.+++++|++++ .+++++++++++.+.|++++...+||||+ +|+++|+||.+|+++.+
T Consensus 193 ----~~~~v~~im~~~~---------~~v~~~~~~~eal~~m~~~~~~~lpVVD~--------~g~lvGiIt~~Dil~~l 251 (449)
T TIGR00400 193 ----PEEILSSIMRSSV---------FSIVGVNDQEEVARLIQKYDFLAVPVVDN--------EGRLVGIVTVDDIIDVI 251 (449)
T ss_pred ----CCCcHHHHhCCCC---------eeECCCCCHHHHHHHHHHcCCCEEeEEcC--------CCeEEEEEEHHHHHHHH
Confidence 1237899998865 78999999999999999999999999997 79999999999999999
Q ss_pred HHHHH
Q 007694 568 REEVN 572 (593)
Q Consensus 568 ~~~~~ 572 (593)
.++..
T Consensus 252 ~~~~~ 256 (449)
T TIGR00400 252 QSEAT 256 (449)
T ss_pred HhhhH
Confidence 87654
No 50
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.38 E-value=2.1e-12 Score=130.83 Aligned_cols=127 Identities=13% Similarity=0.221 Sum_probs=107.5
Q ss_pred hhhhhhhhhhcc--CceEecCCCCHHHHHHHHHhcCCcEEEEEeCC-CeEEEEEeHHHHHHHHhhccCCCCCCCCccccc
Q 007694 415 LEELKVSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVNGE-DFLEGILTYGDIKRCLSKLSSDNSKGDSIASDV 491 (593)
Q Consensus 415 l~~i~v~~~M~~--~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~-~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~ 491 (593)
+...+|+++|++ ++.++++++++.++.+.+.+++++.+||++++ ++++|+++.+|++..+.....
T Consensus 64 l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~------------ 131 (292)
T PRK15094 64 IADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAE------------ 131 (292)
T ss_pred cCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccCC------------
Confidence 344499999998 68999999999999999999999999999876 789999999999865432111
Q ss_pred cccchhhhhccCccccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHHHHHHH
Q 007694 492 NTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLREEV 571 (593)
Q Consensus 492 ~~~~V~dim~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~~~~~~ 571 (593)
..+++++|++. .++++++++.++++.|++.+.+.+||+|+ .|.++|+||++|+++.+..++
T Consensus 132 -~~~l~~l~r~~----------~~V~e~~~l~~~L~~m~~~~~~~a~VvDe--------~G~viGiVTleDIle~ivGei 192 (292)
T PRK15094 132 -AFSMDKVLRQA----------VVVPESKRVDRMLKEFRSQRYHMAIVIDE--------FGGVSGLVTIEDILELIVGEI 192 (292)
T ss_pred -cCCHHHHcCCC----------cCcCCCCcHHHHHHHHHhcCCEEEEEEeC--------CCCEEEEeEHHHHHHHHhCCC
Confidence 12477888652 57899999999999999999999999997 788999999999999887665
Q ss_pred H
Q 007694 572 N 572 (593)
Q Consensus 572 ~ 572 (593)
.
T Consensus 193 ~ 193 (292)
T PRK15094 193 E 193 (292)
T ss_pred c
Confidence 4
No 51
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=4.5e-12 Score=109.30 Aligned_cols=109 Identities=25% Similarity=0.400 Sum_probs=93.6
Q ss_pred CceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCccc
Q 007694 427 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 506 (593)
Q Consensus 427 ~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 506 (593)
++.+++++++++++.+.+.+.++..+||+|++++++|+++..++.+.+..... ..++.++|..++
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~-------------~~~v~~~~~~~~-- 66 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAEGGP-------------DAPVRGVMRRDF-- 66 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHhcCC-------------CCcHHHHhcCCC--
Confidence 46788999999999999988888899999988999999999999876543221 236788887655
Q ss_pred cCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 507 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 507 ~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
.++++++++.++++.|.+++.+.+||+|+ +++++|++|++|+.+
T Consensus 67 -------~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~--------~~~~~G~it~~dl~~ 110 (111)
T cd04639 67 -------PTVSPSATLDAVLRLMQQGGAPAVPVVDG--------SGRLVGLVTLENVGE 110 (111)
T ss_pred -------cEECCCCcHHHHHHHHHhcCCceeeEEcC--------CCCEEEEEEHHHhhc
Confidence 78999999999999999999999999986 689999999999864
No 52
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=4.9e-12 Score=111.57 Aligned_cols=122 Identities=29% Similarity=0.301 Sum_probs=95.7
Q ss_pred CceEecCCCCHHHHHHHHHhcCCcEEEEEeCC-CeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCcc
Q 007694 427 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGE-DFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGIS 505 (593)
Q Consensus 427 ~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~-~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~ 505 (593)
++.+++++.++.++.+.|.+.+.+.+||+|++ ++++|+++.+|+...+.++............+....++.++|.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 80 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTRNV- 80 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHhcCCc-
Confidence 56788999999999999998888899999987 9999999999998876543211000000000112346778877655
Q ss_pred ccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 506 YRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 506 ~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
.++++++++.++++.|.+.+.+.+||+|+ +|+++|+||++|+++
T Consensus 81 --------~~v~~~~~l~~~~~~~~~~~~~~~~V~~~--------~~~~~Gvit~~di~~ 124 (125)
T cd04631 81 --------ITITPDDSIKDAAELMLEKRVGGLPVVDD--------DGKLVGIVTERDLLK 124 (125)
T ss_pred --------eEeCCCCcHHHHHHHHHHcCCceEEEEcC--------CCcEEEEEEHHHhhc
Confidence 89999999999999999999999999996 689999999999875
No 53
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.38 E-value=5.1e-12 Score=111.31 Aligned_cols=122 Identities=25% Similarity=0.342 Sum_probs=96.1
Q ss_pred cCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCcc
Q 007694 426 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGIS 505 (593)
Q Consensus 426 ~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~ 505 (593)
+++.++++++++.++.+.|.+.+++.+||+|++++++|+++.+|+...+............. ......++.++|.+++
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~- 79 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRPLRGRLR-GRDKPETVGDIMSPPV- 79 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccchhhhhhh-cccccccHHHhccCCC-
Confidence 56788999999999999999888899999998899999999999987643321100000000 0012346788887655
Q ss_pred ccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 506 YRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 506 ~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
.++++++++.++++.|.+.+.+.+||+|+ +|+++|+||++|+++
T Consensus 80 --------~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~--------~g~~~Gvit~~di~~ 123 (124)
T cd04600 80 --------VTVRPDTPIAELVPLLADGGHHHVPVVDE--------DRRLVGIVTQTDLIA 123 (124)
T ss_pred --------eeeCCCCcHHHHHHHHHhcCCCceeEEcC--------CCCEEEEEEhHHhhc
Confidence 88999999999999999999999999997 789999999999875
No 54
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.37 E-value=4.7e-12 Score=109.89 Aligned_cols=111 Identities=23% Similarity=0.374 Sum_probs=91.0
Q ss_pred CceEecCCCCHHHHHHHHHhcC-CcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCcc
Q 007694 427 DFVKVALTVTLKEAIESMKDGQ-QNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGIS 505 (593)
Q Consensus 427 ~~~~v~~~~~v~~~~~~l~~~~-~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~ 505 (593)
++.++++++++.++.+.|.+.. ...+||+|++++++|+++.+|+.....+... ..++.++|.+..
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~-------------~~~v~~~~~~~~- 67 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTSQWA-------------QTTVIQVMTPAA- 67 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHHhhcc-------------ccchhhhhcccc-
Confidence 5678999999999999886654 7889999988999999999999876432111 236777776421
Q ss_pred ccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 506 YRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 506 ~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
.+.++.+++++.++++.|.+++.+++||+|+ +++++|++|.+|+++
T Consensus 68 ------~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~--------~~~~~Gvl~~~di~~ 113 (114)
T cd04801 68 ------KLVTVLSEESLAEVLKLLEEQGLDELAVVED--------SGQVIGLITEADLLR 113 (114)
T ss_pred ------cceEECCCCcHHHHHHHHHHCCCCeeEEEcC--------CCcEEEEEeccceec
Confidence 1268899999999999999999999999996 689999999999864
No 55
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.36 E-value=2.8e-12 Score=126.24 Aligned_cols=119 Identities=19% Similarity=0.282 Sum_probs=108.9
Q ss_pred hhhhhhhhc--cCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCcccccccc
Q 007694 417 ELKVSRAMS--KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTC 494 (593)
Q Consensus 417 ~i~v~~~M~--~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~ 494 (593)
-++|.|+|+ .+..++.+++++++..++.++++++.|||+|...+++|+|+.+|+... .++.
T Consensus 187 I~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~-----------------~~~t 249 (432)
T COG4109 187 IITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDK-----------------KPST 249 (432)
T ss_pred eeeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcC-----------------CCCc
Confidence 367899999 588899999999999999999999999999999999999999998654 2356
Q ss_pred chhhhhccCccccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHHHHH
Q 007694 495 LVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLRE 569 (593)
Q Consensus 495 ~V~dim~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~~~~ 569 (593)
++..+|+++| .++.+.+++..+.++|-=.+++.+||+|+ +++++|+|||+|+++.++.
T Consensus 250 ~ieKVMtknp---------~tv~~~tsVAsvaq~MiwE~iem~PVv~~--------n~~llGiitR~dvlk~lq~ 307 (432)
T COG4109 250 TIEKVMTKNP---------ITVRAKTSVASVAQMMIWEGIEMLPVVDS--------NNTLLGIITRQDVLKSLQM 307 (432)
T ss_pred cHHHHhccCC---------eeecccchHHHHHHHHHhccceeeeEEcC--------CceEEEEEEHHHHHHHHHH
Confidence 8999999987 99999999999999999999999999998 8999999999999998874
No 56
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.36 E-value=7.8e-12 Score=107.43 Aligned_cols=105 Identities=23% Similarity=0.308 Sum_probs=92.0
Q ss_pred CceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCccc
Q 007694 427 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 506 (593)
Q Consensus 427 ~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 506 (593)
++.++.++++++++.+.+.+.++..+||+|++++++|+++.+++.... ...+++++|.+++
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~-----------------~~~~v~~~~~~~~-- 63 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGKD-----------------PDTTIEKVMTKNP-- 63 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhccc-----------------ccccHHHHhcCCC--
Confidence 567899999999999999888888999999889999999999986420 1236888887655
Q ss_pred cCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 507 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 507 ~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
.++++++++.++++.|.+++.+.+||+|+ +|+++|++|++|+.+
T Consensus 64 -------~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--------~~~~~G~it~~di~~ 107 (108)
T cd04596 64 -------ITVNPKTSVASVAHMMIWEGIEMLPVVDD--------NKKLLGIISRQDVLK 107 (108)
T ss_pred -------eEECCCCCHHHHHHHHHHcCCCeeeEEcC--------CCCEEEEEEHHHhhc
Confidence 78999999999999999999999999997 789999999999875
No 57
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=1.3e-11 Score=106.54 Aligned_cols=111 Identities=28% Similarity=0.396 Sum_probs=93.7
Q ss_pred CceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCccc
Q 007694 427 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 506 (593)
Q Consensus 427 ~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 506 (593)
++..++++.++.++.+.+.+.+++.+||+|++++++|+++.+|+.+.+..... +....++.++|.+++
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~----------~~~~~~~~~~~~~~~-- 69 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGA----------SALDTPVSEIMTRNV-- 69 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCC----------CccccCHHHhcCCCc--
Confidence 46778999999999999988889999999988999999999999887643321 011346788887655
Q ss_pred cCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 507 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 507 ~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
.++++++++.++++.|.+.+.+.+||++ +++++|+||++|+++
T Consensus 70 -------~~v~~~~~~~~~l~~~~~~~~~~~~Vv~---------~~~~~Gvit~~di~~ 112 (113)
T cd04623 70 -------ITVTPDDTVDEAMALMTERRFRHLPVVD---------GGKLVGIVSIGDVVK 112 (113)
T ss_pred -------EEECCCCcHHHHHHHHHHcCCCEeEEEe---------CCEEEEEEEHHHhhc
Confidence 7899999999999999999999999998 478999999999865
No 58
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.35 E-value=1.2e-11 Score=107.10 Aligned_cols=109 Identities=26% Similarity=0.355 Sum_probs=92.9
Q ss_pred ceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCcccc
Q 007694 428 FVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISYR 507 (593)
Q Consensus 428 ~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~~ 507 (593)
..++++++++.++.+.|.+.+...+||+|++++++|+++.+|+...+..... ...++.++|.+.+
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~------------~~~~v~~~~~~~~--- 68 (113)
T cd04607 4 QLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKGLS------------LDDPVSEVMNRNP--- 68 (113)
T ss_pred ceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcCCC------------cCCCHHHhhcCCC---
Confidence 4578999999999999988888899999988999999999999876543221 1236788887655
Q ss_pred CCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 508 GRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 508 ~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
.++++++++.++++.|.+.+.+++||+|+ +++++|+||++|++.
T Consensus 69 ------~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--------~~~~~Gvit~~di~~ 112 (113)
T cd04607 69 ------ITAKVGSSREEILALMRERSIRHLPILDE--------EGRVVGLATLDDLLS 112 (113)
T ss_pred ------EEEcCCCCHHHHHHHHHHCCCCEEEEECC--------CCCEEEEEEhHHhcc
Confidence 78999999999999999999999999997 789999999999864
No 59
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=1.5e-11 Score=106.23 Aligned_cols=110 Identities=26% Similarity=0.350 Sum_probs=93.7
Q ss_pred CceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCccc
Q 007694 427 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 506 (593)
Q Consensus 427 ~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 506 (593)
++.+++++++++++.+.+.+.++..+||+|++++++|+++.+|+.+.+..... ...++.++|.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~~~------------~~~~v~~~~~~~~-- 67 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAGID------------LDTPVSEIMTRDL-- 67 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhccCC------------CccCHHHhccCCC--
Confidence 46788999999999999988888999999988999999999999876543221 1236778887655
Q ss_pred cCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 507 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 507 ~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
..+.+++++.++++.|.+.+...+||+|+ +|+++|++|++|+++
T Consensus 68 -------~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~--------~g~~~Gilt~~dl~~ 111 (112)
T cd04624 68 -------VTVDPDEPVAEAAKLMRKNNIRHHLVVDK--------GGELVGVISIRDLVR 111 (112)
T ss_pred -------EEECCCCcHHHHHHHHHHcCccEEEEEcC--------CCcEEEEEEHHHhcc
Confidence 88999999999999999999999999997 789999999999864
No 60
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.34 E-value=1.4e-11 Score=106.59 Aligned_cols=110 Identities=23% Similarity=0.300 Sum_probs=92.6
Q ss_pred ceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCcccc
Q 007694 428 FVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISYR 507 (593)
Q Consensus 428 ~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~~ 507 (593)
+..+.+++++.++.+.+.+.+...+||+|++++++|+++.+|+.+.+..... ....++.++|.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~~~-----------~~~~~i~~~~~~~~--- 68 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALESEE-----------LKDAKVREVMNSPV--- 68 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhhhh-----------hcCCcHHHhccCCc---
Confidence 4678999999999999998888999999988999999999999875332211 11246788887655
Q ss_pred CCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 508 GRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 508 ~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
.++.+++++.++++.|.+.+.+.+||+|+ +|+++|++|++|+++
T Consensus 69 ------~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~--------~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 69 ------ITIDANDSIAKARWLMSNNNISRLPVLDD--------KGKVGGIVTEDDILR 112 (113)
T ss_pred ------eEECCCCcHHHHHHHHHHcCCCeeeEECC--------CCeEEEEEEHHHhhc
Confidence 78999999999999999999999999997 789999999999864
No 61
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.34 E-value=1.2e-11 Score=106.98 Aligned_cols=111 Identities=33% Similarity=0.399 Sum_probs=94.6
Q ss_pred CceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCccc
Q 007694 427 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 506 (593)
Q Consensus 427 ~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 506 (593)
+++++++++++.++.+.+.+.++..+||+|++++++|+++.+++.+.+..... ....++.++|.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~~-----------~~~~~v~~~~~~~~-- 69 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGLD-----------ILTLPVADVMTRNP-- 69 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccCc-----------cccCCHHHhhccCC--
Confidence 45678999999999999988778899999988999999999999887654321 11236888888765
Q ss_pred cCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 507 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 507 ~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
.++++++++.++++.|.+.+.+.+||+|+ +++++|+||++|+++
T Consensus 70 -------~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~--------~~~~iG~it~~di~~ 113 (114)
T cd04604 70 -------KTIDPDALAAEALELMEENKITALPVVDD--------NGRPVGVLHIHDLLR 113 (114)
T ss_pred -------eEECCCCcHHHHHHHHHHcCCCEEEEECC--------CCCEEEEEEHHHhhc
Confidence 78999999999999999999999999997 789999999999875
No 62
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.34 E-value=1.3e-11 Score=106.71 Aligned_cols=113 Identities=25% Similarity=0.398 Sum_probs=95.0
Q ss_pred cCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCcc
Q 007694 426 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGIS 505 (593)
Q Consensus 426 ~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~ 505 (593)
++++++++++++.++.+.|.+.+...+||+|++++++|+++.+|+.+.+.+... ....++.++|.+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~-----------~~~~~v~~~~~~~~- 68 (114)
T cd04613 1 RDVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDPSL-----------YDLVVASDIMTKPP- 68 (114)
T ss_pred CCceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhcccc-----------cccEEHHHhccCCC-
Confidence 356789999999999999998888899999988999999999999876543221 11247888888765
Q ss_pred ccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 506 YRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 506 ~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
.++++++++.++++.|.+.+.+.+||+|++ +++++|++|.+|+++
T Consensus 69 --------~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~-------~~~~~Gvvt~~di~~ 113 (114)
T cd04613 69 --------VVVYPEDSLEDALKKFEDSDYEQLPVVDDD-------PGKLLGILSRSDLLS 113 (114)
T ss_pred --------cEEcCCCCHHHHHHHHhhCCccEeeEEeCC-------CCEEEEEEEhHHhhc
Confidence 889999999999999999999999999841 378999999999864
No 63
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.33 E-value=1.9e-11 Score=104.82 Aligned_cols=107 Identities=25% Similarity=0.411 Sum_probs=92.2
Q ss_pred cCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCcc
Q 007694 426 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGIS 505 (593)
Q Consensus 426 ~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~ 505 (593)
+++..++++.++.++.+.|.+.++..+||+|++++++|+++.+|+...... ..++.++|.+++
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~----------------~~~v~~~~~~~~- 64 (109)
T cd04583 2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAYKE----------------AKSLEDIMLEDV- 64 (109)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHhhc----------------CCcHhHhhcCCc-
Confidence 356788999999999999988888999999988999999999999765311 125677777655
Q ss_pred ccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 506 YRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 506 ~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
.++++++++.++++.|.+.+.+++||+++ +|+++|++|++|+++
T Consensus 65 --------~~v~~~~~~~~~~~~~~~~~~~~~~vv~~--------~g~~~Gvit~~~l~~ 108 (109)
T cd04583 65 --------FTVQPDASLRDVLGLVLKRGPKYVPVVDE--------DGKLVGLITRSSLVD 108 (109)
T ss_pred --------eEECCCCcHHHHHHHHHHcCCceeeEECC--------CCeEEEEEehHHhhc
Confidence 78999999999999999999999999997 789999999999864
No 64
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.32 E-value=2.6e-11 Score=104.35 Aligned_cols=108 Identities=24% Similarity=0.300 Sum_probs=92.3
Q ss_pred CceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCccc
Q 007694 427 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 506 (593)
Q Consensus 427 ~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 506 (593)
++.++++++++.++.+.|.+.+++.+||+|+ ++++|+++.+|+.+....... ..++.++|.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~~~~~~-------------~~~v~~~~~~~~-- 65 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIARGLE-------------LAKVKDVMTKDV-- 65 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhcccc-------------ccCHHHHhcCCc--
Confidence 5678899999999999998888889999998 999999999999876443221 136777876654
Q ss_pred cCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 507 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 507 ~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
.++++++++.++++.|.+.+.+.+||+|+ +++++|+||++|+++
T Consensus 66 -------~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--------~~~~~G~i~~~dl~~ 109 (110)
T cd04588 66 -------ITIDEDEQLYDAIRLMNKHNVGRLIVTDD--------EGRPVGIITRTDILR 109 (110)
T ss_pred -------eEECCCCCHHHHHHHHHhcCCCEEEEECC--------CCCEEEEEEhHHhhc
Confidence 88999999999999999999999999986 689999999999864
No 65
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.32 E-value=2.8e-11 Score=104.24 Aligned_cols=108 Identities=25% Similarity=0.355 Sum_probs=92.4
Q ss_pred cCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCcc
Q 007694 426 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGIS 505 (593)
Q Consensus 426 ~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~ 505 (593)
+++.+++.++++.++.+.+.+.++..+||+|+ ++++|+++..|+...+.... ...++.++|.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~~~~~-------------~~~~~~~~~~~~~- 66 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKALRHGL-------------GHAPVKDYMSTDV- 66 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHHhccc-------------ccCcHHHHhcCCC-
Confidence 46778999999999999998888889999998 99999999999987653221 1246788887655
Q ss_pred ccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 506 YRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 506 ~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
.++++++++.+++++|.+.+.+.+||+| +|+++|+||++|+++
T Consensus 67 --------~~v~~~~~l~~~~~~~~~~~~~~~~V~~---------~~~~~Gvvt~~di~~ 109 (110)
T cd04595 67 --------VTVPPDTPLSEVQELMVEHDIGRVPVVE---------DGRLVGIVTRTDLLR 109 (110)
T ss_pred --------EEECCCCcHHHHHHHHHHcCCCeeEEEe---------CCEEEEEEEhHHhhc
Confidence 8899999999999999999999999998 478999999999875
No 66
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.32 E-value=2.2e-11 Score=104.02 Aligned_cols=104 Identities=22% Similarity=0.216 Sum_probs=89.6
Q ss_pred CceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCccc
Q 007694 427 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 506 (593)
Q Consensus 427 ~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 506 (593)
++.+++++.++.++.+.|.+.+...+||+|++++++|+++.+|+..... .++.++|.+.+
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~~------------------~~~~~~~~~~~-- 61 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARASG------------------GCCGDHAEPFK-- 61 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhcc------------------cchhhhcccCC--
Confidence 5678899999999999998888889999998899999999999976410 13567776654
Q ss_pred cCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 507 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 507 ~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
..+.+++++.++++.|.+.+.+.+||+|+ +++++|+||++|+++
T Consensus 62 -------~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~--------~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 62 -------VTVSVDDDLRIVLSRMFAHDMSWLPCVDE--------DGRYVGEVTQRSIAD 105 (106)
T ss_pred -------EEECCCCCHHHHHHHHHHCCCCeeeEECC--------CCcEEEEEEHHHhhc
Confidence 67899999999999999999999999997 689999999999865
No 67
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.32 E-value=2.6e-11 Score=104.56 Aligned_cols=109 Identities=23% Similarity=0.255 Sum_probs=91.9
Q ss_pred CceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCccc
Q 007694 427 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 506 (593)
Q Consensus 427 ~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 506 (593)
++..++++++++++.+.|.+.+...+||+|+ +++.|+++.+|+...+..... ....++.++|.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~-----------~~~~~i~~~~~~~~-- 67 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVLLDGL-----------PSSTPVGEIATFPL-- 67 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHHcCCC-----------CCCCCHHHHhCCCc--
Confidence 4567899999999999998888889999997 899999999999876543211 11346788887765
Q ss_pred cCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 507 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 507 ~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
..+++++++.++++.|.+++.+.+||+| +++++|+||++|+++
T Consensus 68 -------~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---------~~~~~G~it~~dl~~ 110 (111)
T cd04589 68 -------ITVDPDDFLFNALLLMTRHRIHRVVVRE---------GGEVVGVLEQTDLLS 110 (111)
T ss_pred -------EEECCCCcHHHHHHHHHHhCccEEEEee---------CCEEEEEEEhHHhhc
Confidence 7899999999999999999999999998 479999999999875
No 68
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.32 E-value=1.6e-11 Score=131.74 Aligned_cols=127 Identities=17% Similarity=0.168 Sum_probs=109.4
Q ss_pred HHHHHHhhhhhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCcc
Q 007694 409 AAEEMLLEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIA 488 (593)
Q Consensus 409 ~~~~~~l~~i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~ 488 (593)
..+...+..+++.++|.+++.++.+++++.++.+.|.+.+.+.+||+|+ ++++|+|+.+|+... .
T Consensus 79 ~~qae~v~~VKv~eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~-gklvGIVT~rDL~~~----~---------- 143 (475)
T TIGR01303 79 PAVKQTVAFVKSRDLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVILE-DRPVGLVTDSDLLGV----D---------- 143 (475)
T ss_pred HHHHHHHhhcchhhccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEEC-CEEEEEEEHHHhhcC----C----------
Confidence 3445668899999999999999999999999999999888888888874 789999999998432 0
Q ss_pred ccccccchhhhhccCccccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHHHH
Q 007694 489 SDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLR 568 (593)
Q Consensus 489 ~~~~~~~V~dim~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~~~ 568 (593)
...+++++|++++ +++++++++.+|+++|.+++.+++||+|+ +++++|+||++|+++...
T Consensus 144 ---~~~~V~dIMt~~l---------itv~~~~sL~eAl~lM~~~~i~~LPVVD~--------~g~LvGIIT~~DLl~~~~ 203 (475)
T TIGR01303 144 ---RFTQVRDIMSTDL---------VTAPADTEPRKAFDLLEHAPRDVAPLVDA--------DGTLAGILTRTGALRATI 203 (475)
T ss_pred ---CCCCHHHHccCCc---------eEeCCCCcHHHHHHHHHHcCCCEEEEEcC--------CCeEEEEEEHHHHHHHHh
Confidence 1246899998866 89999999999999999999999999997 789999999999998665
Q ss_pred HH
Q 007694 569 EE 570 (593)
Q Consensus 569 ~~ 570 (593)
..
T Consensus 204 ~~ 205 (475)
T TIGR01303 204 YT 205 (475)
T ss_pred CC
Confidence 33
No 69
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.32 E-value=2e-11 Score=107.15 Aligned_cols=120 Identities=28% Similarity=0.345 Sum_probs=95.6
Q ss_pred CceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCccc
Q 007694 427 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 506 (593)
Q Consensus 427 ~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 506 (593)
++.++.+++++.++.+.|.+.+++.+||+|++++++|+++.+++.+.+.........+ ...+....++.++|.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~-- 77 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNGEE--SLTKERDVPVAEVMKTDV-- 77 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhcccccccccc--ccccccCcCHHHhhCCCC--
Confidence 4678899999999999999888899999998899999999999988654322110000 000112346788887655
Q ss_pred cCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 507 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 507 ~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
..+.+++++.++++.|.+.+.+.+||+|+ +++++|+||+.|+++
T Consensus 78 -------~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~--------~~~~~Gvit~~dl~~ 121 (122)
T cd04803 78 -------LTVTPDTPLREAAEIMVENKIGCLPVVDD--------KGTLVGIITRSDFLR 121 (122)
T ss_pred -------eEeCCCCcHHHHHHHHHHcCCCeEEEEcC--------CCCEEEEEEHHHhhc
Confidence 78999999999999999999999999996 689999999999875
No 70
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.32 E-value=2.3e-11 Score=105.71 Aligned_cols=110 Identities=25% Similarity=0.367 Sum_probs=89.2
Q ss_pred CceEecCCCCHHHHHHHHHhcC-CcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCcc
Q 007694 427 DFVKVALTVTLKEAIESMKDGQ-QNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGIS 505 (593)
Q Consensus 427 ~~~~v~~~~~v~~~~~~l~~~~-~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~ 505 (593)
++.++++++++.++.+.+.+.+ ...+||+| +++++|+++.+|+...+..... ....++.++|.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~-----------~~~~~i~~~~~~~~- 68 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRLTAIGKD-----------LSDLPIGEVMTQPV- 68 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHHHhcCCC-----------ccccCHHHhcCCCc-
Confidence 4567899999999999998777 56677776 5899999999999876543211 11246788887655
Q ss_pred ccCCCCcceEecCC--CCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 506 YRGRERGLLTCYPD--TDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 506 ~~~~~~~~~~v~~~--~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
.++.++ +++.++++.|.+++.+.+||+|+ +|+++|+||++|+++
T Consensus 69 --------~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~--------~~~~~Gvit~~dl~~ 114 (115)
T cd04620 69 --------VTLQESEIQDIFTALSLFRQHQIRHLPVLDD--------QGQLIGLVTAESIRQ 114 (115)
T ss_pred --------EEEecccccCHHHHHHHHHHhCCceEEEEcC--------CCCEEEEEEhHHhhc
Confidence 677776 78999999999999999999997 789999999999875
No 71
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.32 E-value=2.5e-11 Score=104.74 Aligned_cols=109 Identities=22% Similarity=0.355 Sum_probs=92.1
Q ss_pred CceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCccc
Q 007694 427 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 506 (593)
Q Consensus 427 ~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 506 (593)
++.+++++++++++.+.+.+.+++.+||+|++++++|+++.+|+......... ...++.++|.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~------------~~~~v~~~~~~~~-- 67 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFESF------------LEKKVFNIVSQDV-- 67 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhhccc------------ccCcHHHHhcCCc--
Confidence 56788999999999999988889999999988999999999999875432111 1236778887655
Q ss_pred cCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 507 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 507 ~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
.++.+++++.++++.|.+++.+.+||+| +|+++|+||++|+++
T Consensus 68 -------~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---------~~~~~G~it~~di~~ 110 (111)
T cd04626 68 -------FYVNEEDTIDEALDIMREKQIGRLPVVD---------DNKLIGVVRTKDILD 110 (111)
T ss_pred -------EEEcCCCcHHHHHHHHHHcCCCeeeEeE---------CCEEEEEEEhHHhcc
Confidence 7899999999999999999999999998 478999999999864
No 72
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.31 E-value=3.6e-11 Score=103.67 Aligned_cols=110 Identities=26% Similarity=0.340 Sum_probs=91.9
Q ss_pred cCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCcc
Q 007694 426 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGIS 505 (593)
Q Consensus 426 ~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~ 505 (593)
+++.+++++.+++++.+.+.+.+...+||+|+ ++++|+++.+++...+..... ....++.++|..++
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~-----------~~~~~i~~~~~~~~- 67 (111)
T cd04800 1 RPPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNRVVAEGL-----------DPDTPVSEVMTAPP- 67 (111)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHhccCC-----------CccCCHHHHhCCCC-
Confidence 35678899999999999998878889999997 999999999999865433211 11246788887655
Q ss_pred ccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 506 YRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 506 ~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
+++++++++.++++.|.+.+.+++||++ +++++|++|++|+++
T Consensus 68 --------~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---------~~~~~Giit~~di~~ 110 (111)
T cd04800 68 --------ITIPPDATVFEALLLMLERGIHHLPVVD---------DGRLVGVISATDLLR 110 (111)
T ss_pred --------eEECCCCcHHHHHHHHHHcCCCeeeEeE---------CCEEEEEEEHHHhhc
Confidence 8899999999999999999999999998 478999999999874
No 73
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.31 E-value=1.3e-11 Score=109.38 Aligned_cols=122 Identities=16% Similarity=0.178 Sum_probs=89.7
Q ss_pred CceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCcc--ccccccchhhhhccCc
Q 007694 427 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIA--SDVNTCLVSSICTRGI 504 (593)
Q Consensus 427 ~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~--~~~~~~~V~dim~~~~ 504 (593)
++.++++++++.++.+.|.+.+...+||+|++++++|+++..|++.....+........... ....-....+.+.+
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 79 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDGVKSR-- 79 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhhhcccccccccC--
Confidence 46789999999999999988888999999988999999999999886533221000000000 00000011122333
Q ss_pred cccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 505 SYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 505 ~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
.+.++++++++.+++++|.+++.+++||+|+ +++++|+||++|+++
T Consensus 80 -------~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~--------~~~~~Giit~~dil~ 125 (126)
T cd04642 80 -------PLITCTPSSTLKEVITKLVANKVHRVWVVDE--------EGKPIGVITLTDIIS 125 (126)
T ss_pred -------CCeEECCCCcHHHHHHHHHHhCCcEEEEECC--------CCCEEEEEEHHHHhc
Confidence 3478999999999999999999999999997 689999999999875
No 74
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.31 E-value=9.7e-12 Score=131.27 Aligned_cols=130 Identities=21% Similarity=0.380 Sum_probs=114.4
Q ss_pred HHHHHhhhhhhhhhhccCceEecCCCCHHHHHHHHHhc-----CCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCC
Q 007694 410 AEEMLLEELKVSRAMSKDFVKVALTVTLKEAIESMKDG-----QQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKG 484 (593)
Q Consensus 410 ~~~~~l~~i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~-----~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~ 484 (593)
+.......-+++.+|+.+++.+++++|+++++..+++. ....++|+|+++++.|+++.+++...
T Consensus 124 ~~~l~y~e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a----------- 192 (451)
T COG2239 124 RQLLSYPEDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTA----------- 192 (451)
T ss_pred HHhcCCChhhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcC-----------
Confidence 34445566789999999999999999999999999743 36789999999999999999998643
Q ss_pred CCccccccccchhhhhccCccccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHH
Q 007694 485 DSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIW 564 (593)
Q Consensus 485 ~~~~~~~~~~~V~dim~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~ 564 (593)
..+.+++|+|.+++ ..|.++++.+++.++|+++++-.+||||+ +++++|+||.+|++
T Consensus 193 ------~~~~~i~~im~~~~---------~~V~~~~dqeevA~~~~~ydl~a~PVVd~--------~~~LiG~itiDDii 249 (451)
T COG2239 193 ------EPDELLKDLMEDDV---------VSVLADDDQEEVARLFEKYDLLAVPVVDE--------DNRLIGIITIDDII 249 (451)
T ss_pred ------CcHhHHHHHhcccc---------eeecccCCHHHHHHHHHHhCCeecceECC--------CCceeeeeeHHHHH
Confidence 23468999999876 89999999999999999999999999998 89999999999999
Q ss_pred HHHHHHHHh
Q 007694 565 NCLREEVNH 573 (593)
Q Consensus 565 ~~~~~~~~~ 573 (593)
+.+++|..+
T Consensus 250 dvi~eEa~e 258 (451)
T COG2239 250 DVIEEEATE 258 (451)
T ss_pred HHHHHHHHH
Confidence 999988765
No 75
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.31 E-value=2.3e-11 Score=105.69 Aligned_cols=114 Identities=18% Similarity=0.208 Sum_probs=91.5
Q ss_pred CceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCccc
Q 007694 427 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 506 (593)
Q Consensus 427 ~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 506 (593)
+++++++++++.++.+.+.+.+.+.+||+|++++++|+++.+|+.+.+....... ..+....++.++|.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~------~~~~~~~~v~~~~~~~~-- 73 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENLD------LERLVDLKVIDVMNTDV-- 73 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCchh------HHHHhCCcHHHHhcCCC--
Confidence 4678999999999999999888899999998899999999999987654321100 00001346888888765
Q ss_pred cCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 507 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 507 ~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
.++++++++.++++.|.+.+ .+||+|+ +++++|+||++|+++
T Consensus 74 -------~~v~~~~~l~~a~~~~~~~~--~~~Vv~~--------~~~~~Gvit~~dil~ 115 (116)
T cd04643 74 -------PVIIDDADIEEILHLLIDQP--FLPVVDD--------DGIFIGIITRREILK 115 (116)
T ss_pred -------ceecCCCCHHHHHHHHhcCC--ceeEEeC--------CCeEEEEEEHHHhhc
Confidence 78999999999999998754 5999997 789999999999875
No 76
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.31 E-value=2.9e-11 Score=104.47 Aligned_cols=111 Identities=28% Similarity=0.397 Sum_probs=91.8
Q ss_pred CceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCccc
Q 007694 427 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 506 (593)
Q Consensus 427 ~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 506 (593)
++.++.++++++++.+.|.+.+.+.+||+|+ ++++|+++.+|+...+..... +....++.++|.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~----------~~~~~~v~~i~~~~~-- 68 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRVVAQGL----------DPESTLVERVMTPNP-- 68 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHHhcCC----------CcCcCCHHHhcCCCC--
Confidence 4677899999999999998888889999997 999999999998754332211 011246788887655
Q ss_pred cCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 507 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 507 ~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
.++.+++++.++++.|.+.+.+++||+++ +++++|+||.+|++.
T Consensus 69 -------~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~--------~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 69 -------VCATSDTPVLEALHLMVQGKFRHLPVVDK--------SGQVVGLLDVTKLTH 112 (113)
T ss_pred -------eEEcCCCCHHHHHHHHHHcCCCcccEECC--------CCCEEEEEEHHHhcc
Confidence 78999999999999999999999999997 689999999999864
No 77
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.31 E-value=2.4e-11 Score=107.09 Aligned_cols=119 Identities=22% Similarity=0.236 Sum_probs=89.8
Q ss_pred CceEecCCCCHHHHHHHHHhcCCcEEEEEeCC-CeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCcc
Q 007694 427 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGE-DFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGIS 505 (593)
Q Consensus 427 ~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~-~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~ 505 (593)
++.++++++++.++.+.|.+.+...+||+|++ ++++|+++.+|+.+.+.+........+.. ......+.++|.+++
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~- 78 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPL--YPIPLRDLTIGTSDV- 78 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhh--hhhhhhhcccCcCCc-
Confidence 46788999999999999988888899999987 89999999999987654322100000000 000012223454443
Q ss_pred ccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHH
Q 007694 506 YRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIW 564 (593)
Q Consensus 506 ~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~ 564 (593)
.++++++++.+|++.|.+++.+++||+|+ +++++|+||++|+.
T Consensus 79 --------~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--------~~~~vGiit~~di~ 121 (123)
T cd04627 79 --------ISINGDQPLIDALHLMHNEGISSVAVVDN--------QGNLIGNISVTDVR 121 (123)
T ss_pred --------eEeCCCCCHHHHHHHHHHcCCceEEEECC--------CCcEEEEEeHHHhh
Confidence 78999999999999999999999999997 78999999999974
No 78
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.31 E-value=2.1e-11 Score=105.57 Aligned_cols=112 Identities=22% Similarity=0.265 Sum_probs=93.3
Q ss_pred CceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCccc
Q 007694 427 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 506 (593)
Q Consensus 427 ~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 506 (593)
++.++++++++.++.+.|.+.+...+||+|++++++|+++.+++.+.+....... ....++.++|.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~---------~~~~~v~~~~~~~~-- 70 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYHC---------DGVATVRDIMTTEV-- 70 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhhcc---------CCCccHHHHhccCc--
Confidence 5678899999999999998878888999998899999999999987654322100 11346888887655
Q ss_pred cCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 507 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 507 ~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
..+.+++++.++++.|.+++.+.+||+| +|+++|+||++|+.+
T Consensus 71 -------~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---------~~~~~Gvit~~di~~ 113 (114)
T cd04629 71 -------LTVSPDDSIVDLAQLMLKAKPKRYPVVD---------DGKLVGQISRRDVLR 113 (114)
T ss_pred -------eEECCCCcHHHHHHHHHHhCCCccCEEE---------CCEEEEEEEHHHHhc
Confidence 7899999999999999999999999998 478999999999875
No 79
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.31 E-value=3.2e-11 Score=103.97 Aligned_cols=108 Identities=19% Similarity=0.203 Sum_probs=90.9
Q ss_pred CceEecCCCCHHHHHHHHHhcCCcEEEEEeCC-CeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCcc
Q 007694 427 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGE-DFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGIS 505 (593)
Q Consensus 427 ~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~-~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~ 505 (593)
++.++++++++.++.+.|.+.+...+||+|++ ++++|+++.+|+.+....... ..++.+++. ++
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~-------------~~~~~~~~~-~~- 66 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEE-------------DLDLRDLLR-PP- 66 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCC-------------cCCHHHHhc-CC-
Confidence 56789999999999999988888999999988 899999999999887543221 024556554 33
Q ss_pred ccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 506 YRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 506 ~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
.++.+++++.++++.|.+++.+++||+|+ +++++|+||++|+++
T Consensus 67 --------~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--------~~~~~Gvit~~di~~ 110 (111)
T cd04590 67 --------LFVPESTPLDDLLEEMRKERSHMAIVVDE--------YGGTAGLVTLEDILE 110 (111)
T ss_pred --------eecCCCCcHHHHHHHHHhcCCcEEEEEEC--------CCCEEEEeEHHHhhc
Confidence 78899999999999999999999999997 789999999999864
No 80
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.31 E-value=3e-11 Score=104.45 Aligned_cols=110 Identities=29% Similarity=0.416 Sum_probs=91.5
Q ss_pred CceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHH-HhhccCCCCCCCCccccccccchhhhhccCcc
Q 007694 427 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRC-LSKLSSDNSKGDSIASDVNTCLVSSICTRGIS 505 (593)
Q Consensus 427 ~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~-l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~ 505 (593)
++.++.+++++.++.+.|.+.+++.+||+|+ ++++|+++.+|+... +..... ....++.++|.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~~~~~~~~~-----------~~~~~~~~~~~~~~- 68 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIVVRAVAEGRD-----------PDTTTVGDVMTRGV- 68 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHHHHhhccCC-----------cccCCHHHhccCCc-
Confidence 5678899999999999999888999999997 999999999998633 222111 11224888887655
Q ss_pred ccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 506 YRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 506 ~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
.++.+++++.++++.|.+.+.+.+||+|+ +++++|+||++|+++
T Consensus 69 --------~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--------~~~~~G~it~~di~~ 112 (113)
T cd04622 69 --------VTVTEDDDVDEAARLMREHQVRRLPVVDD--------DGRLVGIVSLGDLAR 112 (113)
T ss_pred --------cEECCCCCHHHHHHHHHHcCCCeeeEECC--------CCcEEEEEEHHHhhc
Confidence 78999999999999999999999999986 689999999999865
No 81
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.30 E-value=1.9e-11 Score=109.64 Aligned_cols=122 Identities=28% Similarity=0.348 Sum_probs=94.2
Q ss_pred cCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCC-------C-CCCC---cccccccc
Q 007694 426 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDN-------S-KGDS---IASDVNTC 494 (593)
Q Consensus 426 ~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~-------~-~~~~---~~~~~~~~ 494 (593)
+++.++.+++++.++.+.|.+.+++.+||+|++++++|+++.+|+........... . ..+. ........
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGR 81 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCC
Confidence 46788999999999999999888899999998899999999999986543211000 0 0000 00001234
Q ss_pred chhhhhccCccccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 495 LVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 495 ~V~dim~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
++.++|.+++ ..+.+++++.++++.|.+.+.+.+||+| +|+++|+||++|+++
T Consensus 82 ~v~~~~~~~~---------~~v~~~~~~~~~~~~~~~~~~~~l~Vvd---------~g~~~Gvit~~di~~ 134 (135)
T cd04586 82 KVADVMTRPV---------VTVGEDTPLAEVAELMEEHRIKRVPVVR---------GGRLVGIVSRADLLR 134 (135)
T ss_pred CHHHHhCCCc---------eEeCCCCcHHHHHHHHHHcCCCccCEec---------CCEEEEEEEhHhhhc
Confidence 6778887655 8899999999999999999999999998 489999999999875
No 82
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.30 E-value=3.9e-11 Score=103.29 Aligned_cols=109 Identities=25% Similarity=0.353 Sum_probs=92.6
Q ss_pred CceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCccc
Q 007694 427 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 506 (593)
Q Consensus 427 ~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 506 (593)
++..+++++++.++.+.|.+.++..+||+|+ ++++|+++.+|+.+....... ...++.++|.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~~~~~------------~~~~v~~~~~~~~-- 66 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLLASGPD------------LQTPVGEVMSSPL-- 66 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHhcCCC------------CCcCHHHhcCCCc--
Confidence 4678899999999999999888889999987 899999999999877543221 1346788887655
Q ss_pred cCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 507 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 507 ~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
.++++++++.++++.|.+.+.+.+||+|+ +|+++|+||++|+++
T Consensus 67 -------~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~--------~~~~~Gvi~~~di~~ 110 (111)
T cd04611 67 -------LTVPADTSLYDARQLMREHGIRHLVVVDD--------DGELLGLLSQTDLLQ 110 (111)
T ss_pred -------eEECCCCCHHHHHHHHHHcCCeEEEEECC--------CCcEEEEEEhHHhhc
Confidence 78999999999999999999999999997 689999999999864
No 83
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.30 E-value=3e-11 Score=108.59 Aligned_cols=121 Identities=22% Similarity=0.284 Sum_probs=94.4
Q ss_pred CceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCC------------CCCcccccccc
Q 007694 427 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSK------------GDSIASDVNTC 494 (593)
Q Consensus 427 ~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~------------~~~~~~~~~~~ 494 (593)
++.++++++++.++.+.|.+.+...+||+|++++++|+++..|+...+......... ...........
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVPL 81 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccccc
Confidence 467889999999999999988889999999989999999999998875422110000 00000001134
Q ss_pred chhhhhccCccccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 495 LVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 495 ~V~dim~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
+++++|.+++ ..+.+++++.++++.|.+.+.+++||++ +++++|+||++|+++
T Consensus 82 ~v~~~~~~~~---------~~v~~~~~l~~~~~~~~~~~~~~l~Vv~---------~~~~~Gvit~~di~~ 134 (135)
T cd04621 82 VAEDIMTEEI---------ITVSPNDDVVDAAKLMLEANISGLPVVD---------NDNIVGVITKTDICR 134 (135)
T ss_pred cHHHhcCCCC---------eEECCCCCHHHHHHHHHHcCCCEEEEEe---------CCEEEEEEEHHHHhh
Confidence 6888887655 7899999999999999999999999998 478999999999875
No 84
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.30 E-value=1.9e-11 Score=102.96 Aligned_cols=94 Identities=19% Similarity=0.293 Sum_probs=84.1
Q ss_pred CceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCccc
Q 007694 427 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 506 (593)
Q Consensus 427 ~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 506 (593)
++.++++++++.++.+.|.+.+...+||+|++++++|+++.+|+.... . +
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~--------------------~--------~-- 51 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAKS--------------------E--------V-- 51 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcCC--------------------C--------c--
Confidence 567899999999999999888889999999889999999999987531 0 1
Q ss_pred cCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 507 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 507 ~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
.++.+++++.+++++|.+++.+++||+|+ +++++|+||++|+++
T Consensus 52 -------~~v~~~~~l~~a~~~m~~~~~~~lpVv~~--------~~~~~Giit~~di~~ 95 (96)
T cd04614 52 -------VTATKRTTVSECAQKMKRNRIEQIPIING--------NDKLIGLLRDHDLLK 95 (96)
T ss_pred -------EEecCCCCHHHHHHHHHHhCCCeeeEECC--------CCcEEEEEEHHHhhc
Confidence 68899999999999999999999999996 689999999999875
No 85
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.30 E-value=3e-11 Score=107.22 Aligned_cols=124 Identities=19% Similarity=0.238 Sum_probs=94.3
Q ss_pred CceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCC--ccccccccchhhhhccCc
Q 007694 427 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDS--IASDVNTCLVSSICTRGI 504 (593)
Q Consensus 427 ~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~--~~~~~~~~~V~dim~~~~ 504 (593)
++.++++++++.++.+.|.+.+.+.+||+|++++++|+++.+|+...+............ ...+....++.++|.+++
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSSPV 81 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcCCC
Confidence 467889999999999999998899999999989999999999998765321100000000 000011346788887655
Q ss_pred cccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 505 SYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 505 ~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
+++++++++.++++.|.+.+...+||+++++ +++++|+||++|+++
T Consensus 82 ---------~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~------~~~~~Gvit~~di~~ 127 (128)
T cd04632 82 ---------ITASPNDSVRDAVDRMLENDDSSVVVVTPDD------DTKVVGILTKKDVLR 127 (128)
T ss_pred ---------ceECCCCcHHHHHHHHHhCCCCeEeEeccCC------CCcEEEEEEhHhhhc
Confidence 7899999999999999999999999985311 589999999999875
No 86
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.29 E-value=9.5e-12 Score=132.17 Aligned_cols=126 Identities=13% Similarity=0.139 Sum_probs=107.6
Q ss_pred HHhhhhhhhhhhcc--CceEecCCCCHHHHHHHHHhcCCcEEEEEeCC-CeEEEEEeHHHHHHHHhhccCCCCCCCCccc
Q 007694 413 MLLEELKVSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVNGE-DFLEGILTYGDIKRCLSKLSSDNSKGDSIAS 489 (593)
Q Consensus 413 ~~l~~i~v~~~M~~--~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~-~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~ 489 (593)
-.+.+.+|+|+|++ ++.+++.+++++++.+.+.+++++.+||++++ ++++|+++.+|+...+.+ .
T Consensus 186 l~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~--~---------- 253 (408)
T TIGR03520 186 VSFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNK--K---------- 253 (408)
T ss_pred hccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhcc--C----------
Confidence 34567899999997 78999999999999999999999999999865 689999999999765321 0
Q ss_pred cccccchhhhhccCccccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHHHHH
Q 007694 490 DVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLRE 569 (593)
Q Consensus 490 ~~~~~~V~dim~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~~~~ 569 (593)
..+++++|++ +.+|++++++.++++.|++.+.+..+|+|+ .|..+|+||.+|+++.+-.
T Consensus 254 ---~~~l~~~~~~----------~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE--------~G~~~GiVT~eDileeivg 312 (408)
T TIGR03520 254 ---NFDWQSLLRE----------PYFVPENKKLDDLLRDFQEKKNHLAIVVDE--------YGGTSGLVTLEDIIEEIVG 312 (408)
T ss_pred ---CCCHHHHcCC----------CeEeCCCCcHHHHHHHHHhcCceEEEEEcC--------CCCEEEEEEHHHHHHHHhC
Confidence 1246677764 278999999999999999999999999997 7999999999999998865
Q ss_pred HH
Q 007694 570 EV 571 (593)
Q Consensus 570 ~~ 571 (593)
++
T Consensus 313 ei 314 (408)
T TIGR03520 313 DI 314 (408)
T ss_pred CC
Confidence 54
No 87
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.29 E-value=4.4e-11 Score=104.63 Aligned_cols=120 Identities=28% Similarity=0.331 Sum_probs=94.1
Q ss_pred CceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCccc
Q 007694 427 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 506 (593)
Q Consensus 427 ~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 506 (593)
++.+++++.++.++.+.|.+.+.+.+||+|+ ++++|+++.+|+..............+. .......++.++|.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-- 77 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLASPSKATTLDIWEL-YYLLSKIKVSDIMTRDP-- 77 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhhhcccccccchhh-hhhhcccCHHHhccCCC--
Confidence 4677899999999999999888899999997 9999999999998765432111000000 00012346778887655
Q ss_pred cCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 507 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 507 ~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
.++.+++++.++++.|.+.+.+.+||+|+ +|+++|+||++|+++
T Consensus 78 -------~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--------~~~~~Gvvt~~di~~ 121 (122)
T cd04585 78 -------ITVSPDASVEEAAELMLERKISGLPVVDD--------QGRLVGIITESDLFR 121 (122)
T ss_pred -------eEeCCCCcHHHHHHHHHHcCCCceeEECC--------CCcEEEEEEHHHhhh
Confidence 88999999999999999999999999996 689999999999875
No 88
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.29 E-value=2.1e-11 Score=123.07 Aligned_cols=114 Identities=27% Similarity=0.357 Sum_probs=99.9
Q ss_pred hhhhhhhhccC-ceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccc
Q 007694 417 ELKVSRAMSKD-FVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCL 495 (593)
Q Consensus 417 ~i~v~~~M~~~-~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~ 495 (593)
.++++++|.++ +.++++++++.++.+.|.+.+++.+||+|++++++|+++.+|+.+.+..... ...+
T Consensus 154 ~~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~~~~------------~~~~ 221 (268)
T TIGR00393 154 LVKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLGGGS------------LKSE 221 (268)
T ss_pred hhhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhcCCc------------ccCc
Confidence 58899999998 9999999999999999988888999999988999999999999876432111 1347
Q ss_pred hhhhhccCccccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEe
Q 007694 496 VSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILH 559 (593)
Q Consensus 496 V~dim~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt 559 (593)
++|+|.+++ .++.+++++.++++.|.+.+.+.+||+|+ +|+++|+|+
T Consensus 222 v~~im~~~~---------~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--------~g~l~GvI~ 268 (268)
T TIGR00393 222 VRDFMTLGP---------KTFKLDALLLEALEFLERRKITSLVVVDD--------HNKVLGVLH 268 (268)
T ss_pred HHHhCCCCC---------eEECCCCcHHHHHHHHHHcCCcEEEEECC--------CCeEEEEEC
Confidence 889998765 78999999999999999999999999997 789999986
No 89
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.29 E-value=1.7e-11 Score=132.43 Aligned_cols=121 Identities=17% Similarity=0.153 Sum_probs=101.2
Q ss_pred hhhhhhhc---cCceEecCCCCHHHHHHHHHhcCCcEEEEEeC---CCeEEEEEeHHHHHHHHhhccCCCCCCCCccccc
Q 007694 418 LKVSRAMS---KDFVKVALTVTLKEAIESMKDGQQNCVLVVNG---EDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDV 491 (593)
Q Consensus 418 i~v~~~M~---~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~---~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~ 491 (593)
.+|+++|. .+.+++++++++.++.+.|.+.++..+||+|+ +++++|+||..|++... . .
T Consensus 94 ~kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~---~------------~ 158 (502)
T PRK07107 94 RRVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR---M------------S 158 (502)
T ss_pred HHHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc---c------------C
Confidence 45777776 34568999999999999999999999999997 58999999999986420 0 1
Q ss_pred cccchhhhhccCccccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHHHH
Q 007694 492 NTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLR 568 (593)
Q Consensus 492 ~~~~V~dim~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~~~ 568 (593)
.+.+++++|++.+ .++++++++++.+|+++|.+++.+.+||+|+ +++++|+||++|+++...
T Consensus 159 ~~~~V~dIMt~~~-------~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~--------~g~LvGIIT~~Dilk~~~ 220 (502)
T PRK07107 159 LDTKVKDFMTPFE-------KLVTANEGTTLKEANDIIWDHKLNTLPIVDK--------NGNLVYLVFRKDYDSHKE 220 (502)
T ss_pred CCCCHHHHhCCCC-------CeEEECCCCcHHHHHHHHHHcCCCEEEEEcC--------CCeEEEEEEhHHHHhccc
Confidence 2357999998622 2378999999999999999999999999997 789999999999988643
No 90
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.29 E-value=6.1e-11 Score=102.39 Aligned_cols=110 Identities=19% Similarity=0.381 Sum_probs=89.6
Q ss_pred CceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCccc
Q 007694 427 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 506 (593)
Q Consensus 427 ~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 506 (593)
++.++++++++.++.+.+.+.+...++|.+ +++++|+++.+|+.+.+..... +....++.++|.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~----------~~~~~~v~~~~~~~~-- 68 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-RGELVGLLTFREVLQAMAQHGA----------GVLDTTVRAIMNPEP-- 68 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEee-CCEEEEEEEHHHHHHHHHhcCC----------chhcCCHHHHhCCCC--
Confidence 467889999999999999877777777665 5899999999999876543211 011246888887755
Q ss_pred cCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 507 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 507 ~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
.++.+++++++++++|.+++.+.+||+| +++++|+||++|+++
T Consensus 69 -------~~v~~~~~l~~a~~~m~~~~~~~l~Vv~---------~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 69 -------IVASPDDSIDEVRRLMVERHLRYLPVLD---------GGTLLGVISFHDVAK 111 (112)
T ss_pred -------eEECCCCCHHHHHHHHHHcCCCeeeEEE---------CCEEEEEEEHHHhhc
Confidence 7899999999999999999999999998 489999999999875
No 91
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.28 E-value=4e-11 Score=106.21 Aligned_cols=114 Identities=19% Similarity=0.237 Sum_probs=89.1
Q ss_pred CceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHH-----HhhccCCCCCCCCccccccccchhhhhc
Q 007694 427 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRC-----LSKLSSDNSKGDSIASDVNTCLVSSICT 501 (593)
Q Consensus 427 ~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~-----l~~~~~~~~~~~~~~~~~~~~~V~dim~ 501 (593)
++.++.+++++.++.+.|.+.+...+||+|++++++|+++.+|+... +.+... +....+++++|+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~----------~~~~~~v~~im~ 71 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEGGI----------SRSELTVADVMT 71 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHcCC----------CchheEHHHhcC
Confidence 35678999999999999988888899999988999999999998852 111100 011346888987
Q ss_pred cCccccCCCCcceEe----cCCCCHHHHHHHHHHcCCcccceeecchhhhhccC-CeEEEEEehhhHHH
Q 007694 502 RGISYRGRERGLLTC----YPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRK-QRIVAILHYDSIWN 565 (593)
Q Consensus 502 ~~~~~~~~~~~~~~v----~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~-~~lvGiIt~~di~~ 565 (593)
++.. ...+ .+++++.++++.|.+++.+++||+|+ + |+++|+||++|+++
T Consensus 72 ~~~~-------~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~--------~~~~~~G~it~~di~~ 125 (126)
T cd04640 72 PKED-------LKALDLEELENASVGDVVETLKASGRQHALVVDR--------EHHQIRGIISTSDIAR 125 (126)
T ss_pred chhh-------hccccHHHhccCcHHHHHHHHHHCCCceEEEEEC--------CCCEEEEEEeHHHHhh
Confidence 6430 0122 36899999999999999999999997 5 78999999999875
No 92
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.27 E-value=8.6e-11 Score=101.44 Aligned_cols=110 Identities=25% Similarity=0.358 Sum_probs=91.2
Q ss_pred CceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCccc
Q 007694 427 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 506 (593)
Q Consensus 427 ~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 506 (593)
++.++++++++.++.+.|.+.+.+.+||+|++ +++|+++.+|+...+...... ....++.++|.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~G~v~~~dl~~~~~~~~~~----------~~~~~~~~~~~~~~-- 68 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDNE-KPVGIITERDLVKKVVSRNLK----------PREVPVGEVMSTPL-- 68 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEECC-EEEEEEEHHHHHHHHhhccCC----------cccCCHHHhcCCCc--
Confidence 46778999999999999988888999999965 999999999998865432110 11246788887655
Q ss_pred cCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 507 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 507 ~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
..+.+++++.++++.|.+.+.+.+||+|+ + +++|+|+++|+++
T Consensus 69 -------~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--------~-~~~Gvi~~~di~~ 111 (112)
T cd04802 69 -------ITIDPNASLNEAAKLMAKHGIKRLPVVDD--------D-ELVGIVTTTDIVM 111 (112)
T ss_pred -------EEECCCCCHHHHHHHHHHcCCCeeEEeeC--------C-EEEEEEEhhhhhc
Confidence 78899999999999999999999999985 4 9999999999864
No 93
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.27 E-value=4.7e-11 Score=129.79 Aligned_cols=125 Identities=15% Similarity=0.138 Sum_probs=105.1
Q ss_pred HHHhhhhhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccc
Q 007694 412 EMLLEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDV 491 (593)
Q Consensus 412 ~~~l~~i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~ 491 (593)
.+.++.++++++|.+++.++.+++++.++.+.|.+.++..+||+|++++++|+|+.+|+++.+..+.. .
T Consensus 329 ~~~l~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~-----------~ 397 (454)
T TIGR01137 329 FDVLKNATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGKA-----------N 397 (454)
T ss_pred HHHhccCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhccCC-----------C
Confidence 34589999999999999999999999999999988888999999988999999999999886543221 1
Q ss_pred cccchhhhhccCccccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHHH
Q 007694 492 NTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCL 567 (593)
Q Consensus 492 ~~~~V~dim~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~~ 567 (593)
...++.++|.+++ .++++++++.+++++|.+.+ .|||++ +++++|+||++|+++.+
T Consensus 398 ~~~~v~~im~~~~---------~~v~~~~~l~~a~~~~~~~~---~~vV~~--------~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 398 PDDAVSKVMSKKF---------IQIGEGEKLSDLSKFLEKNS---SAIVTE--------EGKPIGVVTKIDLLSFL 453 (454)
T ss_pred cCCCHHHhcCCCC---------eEECCcCcHHHHHHHHHHCC---eeEEEE--------CCEEEEEEEHHHHHHhh
Confidence 1247889998765 78999999999999998864 356665 68999999999998875
No 94
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.27 E-value=5.3e-11 Score=106.33 Aligned_cols=121 Identities=28% Similarity=0.344 Sum_probs=93.1
Q ss_pred CceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCC--------CC-Cccccccccchh
Q 007694 427 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSK--------GD-SIASDVNTCLVS 497 (593)
Q Consensus 427 ~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~--------~~-~~~~~~~~~~V~ 497 (593)
++.++++++++.++.+.+.+.+++.+||+|++++++|+++..|+...+......... .+ .........++.
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKVE 81 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCCHH
Confidence 467889999999999999888888999999889999999999998876432210000 00 000000112677
Q ss_pred hhhccCccccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 498 SICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 498 dim~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
++|.+++ ..+.+++++.+++++|.+.+.+.+||+| +++++|++|++|+++
T Consensus 82 ~~~~~~~---------~~v~~~~~l~~~~~~~~~~~~~~~~V~~---------~~~~iGvit~~dl~~ 131 (132)
T cd04636 82 EIMTKKV---------ITVDEDTTIEDVARIMSKKNIKRLPVVD---------DGKLVGIISRGDIIR 131 (132)
T ss_pred HhccCCc---------eEECCCCcHHHHHHHHHHCCCCeeEEEE---------CCEEEEEEEHHHhhc
Confidence 7776654 7899999999999999999999999998 489999999999875
No 95
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.27 E-value=6.2e-11 Score=102.94 Aligned_cols=106 Identities=18% Similarity=0.203 Sum_probs=88.4
Q ss_pred CceEecCCCCHHHHHHHHHhcCCcEEEEEeC---CCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccC
Q 007694 427 DFVKVALTVTLKEAIESMKDGQQNCVLVVNG---EDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRG 503 (593)
Q Consensus 427 ~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~---~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~ 503 (593)
++.++.+++++.++.+.|.+.+...+||+|+ +++++|+++.+|+.... . ...+++++|.++
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~-~---------------~~~~v~~~~~~~ 66 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLT-D---------------SETPLSEVMTPR 66 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhh-c---------------cCCCHHHhcCCC
Confidence 4567899999999999998888889999997 68999999999986431 1 013578888765
Q ss_pred ccccCCCCcceEecC--CCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 504 ISYRGRERGLLTCYP--DTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 504 ~~~~~~~~~~~~v~~--~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
. ..+.. ++++.++++.|.+++.+.+||+|+ +++++|+||++|+++
T Consensus 67 ~---------~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~--------~~~~~Gvit~~di~~ 113 (114)
T cd04602 67 E---------VLVVAPTGITLEEANEILRESKKGKLPIVND--------DGELVALVTRSDLKK 113 (114)
T ss_pred c---------eEEECCCCCCHHHHHHHHHhcCCCceeEECC--------CCeEEEEEEHHHhhc
Confidence 4 55655 999999999999999999999987 789999999999864
No 96
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.27 E-value=3.7e-11 Score=105.45 Aligned_cols=120 Identities=24% Similarity=0.284 Sum_probs=93.7
Q ss_pred CceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCccc
Q 007694 427 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 506 (593)
Q Consensus 427 ~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 506 (593)
++.++.+++++.++.+.+.+.+++.+||+|++++++|+++.+|+++.......... ... .......++.++|.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~-- 77 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVED-QQR-TQTKASPTVEKIMSTPV-- 77 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccccc-hhh-hhhhccCcHHHHhcCCC--
Confidence 56788999999999999988888999999988999999999999764211100000 000 00012346778887655
Q ss_pred cCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 507 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 507 ~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
..+++++++.++++.|.+.+.+.+||+|+ +|+++|++|++|+++
T Consensus 78 -------~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~--------~g~~~Gvit~~dl~~ 121 (122)
T cd04635 78 -------YSVTPDDSIATAVELMLEHDIGRLPVVNE--------KDQLVGIVDRHDVLK 121 (122)
T ss_pred -------eeECCCCCHHHHHHHHHHcCCCeeeEEcC--------CCcEEEEEEhHHhhc
Confidence 88999999999999999999999999997 789999999999875
No 97
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.27 E-value=7e-11 Score=127.93 Aligned_cols=118 Identities=17% Similarity=0.130 Sum_probs=102.1
Q ss_pred hhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeC---CCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchh
Q 007694 421 SRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNG---EDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVS 497 (593)
Q Consensus 421 ~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~---~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~ 497 (593)
+..|.+++.++++++++.++.+.|.++++..+||+|+ +++++|+|+.+|+.... . .+.+|+
T Consensus 103 ~~gmi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~---~-------------~~~~V~ 166 (505)
T PLN02274 103 RVGFVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN---D-------------RETKLS 166 (505)
T ss_pred cccccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc---c-------------cCCcHH
Confidence 4458899999999999999999999999999999997 37999999999986431 1 134799
Q ss_pred hhhccCccccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHHHHH
Q 007694 498 SICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLRE 569 (593)
Q Consensus 498 dim~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~~~~ 569 (593)
++|+++. ..+++++++++.+++++|.+++.+.+||||+ +++++|+||++|+++....
T Consensus 167 eIMt~~~-------~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~--------~g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 167 EVMTSDD-------DLVTAPAGIDLEEAEAVLKDSKKGKLPLVNE--------DGELVDLVTRTDVKRVKGY 223 (505)
T ss_pred HHhccCC-------CcEEECCCCCHHHHHHHHHHcCCCEEEEEcC--------CCeEEEEEEHHHHHHHhhC
Confidence 9998752 1379999999999999999999999999997 7899999999999988764
No 98
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.26 E-value=7.5e-11 Score=101.49 Aligned_cols=110 Identities=30% Similarity=0.414 Sum_probs=92.0
Q ss_pred cCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCcc
Q 007694 426 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGIS 505 (593)
Q Consensus 426 ~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~ 505 (593)
+++..+++++++.++.+.|.+.+...+||+|+ ++++|+++.+|+......... ...++.++|.+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~------------~~~~~~~~~~~~~- 66 (111)
T cd04612 1 PDVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAEGRE------------ATVLVGDVMTRDP- 66 (111)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHhcCcc------------cccCHHHhccCCC-
Confidence 35678899999999999998888889999998 999999999999875432111 0125667776655
Q ss_pred ccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 506 YRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 506 ~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
.++.+++++.++++.|.+.+.+.+||+|+ +++++|+||.+|+.+
T Consensus 67 --------~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--------~~~~~G~it~~di~~ 110 (111)
T cd04612 67 --------VTASPDETLRDALKRMAERDIGRLPVVDD--------SGRLVGIVSRSDLLR 110 (111)
T ss_pred --------eEECCCCCHHHHHHHHHhCCCCeeeEEcC--------CCCEEEEEEHHHhhh
Confidence 88999999999999999999999999986 689999999999875
No 99
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.25 E-value=4.1e-11 Score=103.11 Aligned_cols=102 Identities=25% Similarity=0.362 Sum_probs=86.1
Q ss_pred ecCCCCHHHHHHHHHhcC-----CcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCcc
Q 007694 431 VALTVTLKEAIESMKDGQ-----QNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGIS 505 (593)
Q Consensus 431 v~~~~~v~~~~~~l~~~~-----~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~ 505 (593)
+.+++++.++.+.|.+++ ...+||+|++++++|+++.+++... . ...++++++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~----~-------------~~~~v~~~~~~~~- 63 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLA----D-------------PDTPVSDIMDTDV- 63 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcC----C-------------CcchHHHHhCCCC-
Confidence 568899999999998766 3679999988999999999988642 0 1236778887655
Q ss_pred ccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHH
Q 007694 506 YRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNC 566 (593)
Q Consensus 506 ~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~ 566 (593)
..+.+++++.++++.|.+.+.+.+||+|+ +++++|+||++|++++
T Consensus 64 --------~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~--------~~~~~Gvit~~dll~~ 108 (109)
T cd04606 64 --------ISVSADDDQEEVARLFEKYDLLALPVVDE--------EGRLVGIITVDDVIDV 108 (109)
T ss_pred --------eEEcCCCCHHHHHHHHHHcCCceeeeECC--------CCcEEEEEEhHHhhhh
Confidence 78999999999999999999999999997 7899999999999865
No 100
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.25 E-value=5.3e-11 Score=102.26 Aligned_cols=107 Identities=26% Similarity=0.296 Sum_probs=89.5
Q ss_pred cCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCcc
Q 007694 426 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGIS 505 (593)
Q Consensus 426 ~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~ 505 (593)
+++..+.+++++.++.+.+.+.++..+||+|++++++|+++.+++.... . ...++.++|..++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~---~-------------~~~~v~~~~~~~~- 64 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFET---D-------------LDKPVSEVMTPEN- 64 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeecc---c-------------CCCCHHHhcccCc-
Confidence 4567889999999999999888889999999889999999999985321 0 1236788887644
Q ss_pred ccCCCCcceEecC-CCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 506 YRGRERGLLTCYP-DTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 506 ~~~~~~~~~~v~~-~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
..+.+ ++++.++++.|.+.+.+.+||+|+ +++++|+||++|+++
T Consensus 65 --------~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~--------~~~~~Gvi~~~dil~ 109 (110)
T cd04601 65 --------LLTTVEGTSLEEALELLHEHKIEKLPVVDD--------EGKLKGLITVKDIEK 109 (110)
T ss_pred --------eEEecCCCCHHHHHHHHHHhCCCeeeEEcC--------CCCEEEEEEhhhhhc
Confidence 55566 999999999999999999999997 789999999999875
No 101
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.25 E-value=2.2e-11 Score=127.26 Aligned_cols=125 Identities=22% Similarity=0.245 Sum_probs=111.9
Q ss_pred hhhhhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCcccccccc
Q 007694 415 LEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTC 494 (593)
Q Consensus 415 l~~i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~ 494 (593)
+-.-++.++|+.+.+++++..++.++...|.+.+.+...++|+++...||||++|++........ ....
T Consensus 146 ~~~trv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~-----------~~~~ 214 (610)
T COG2905 146 FILTRVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGR-----------SKTQ 214 (610)
T ss_pred HHHHHHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCC-----------Cccc
Confidence 44567899999999999999999999999999999999999999999999999999987544332 1246
Q ss_pred chhhhhccCccccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHHHH
Q 007694 495 LVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLR 568 (593)
Q Consensus 495 ~V~dim~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~~~ 568 (593)
+|+++|+.++ .+|+.++.+.+|+-+|.+++++|+||++ +|+++|+||..||++..+
T Consensus 215 ~V~evmT~p~---------~svd~~~~~feAml~m~r~~I~hl~V~e---------~gq~~Gilt~~dIl~l~s 270 (610)
T COG2905 215 KVSEVMTSPV---------ISVDRGDFLFEAMLMMLRNRIKHLPVTE---------DGQPLGILTLTDILRLFS 270 (610)
T ss_pred chhhhhccCc---------eeecCcchHHHHHHHHHHhCCceeeeec---------CCeeeEEeeHHHHHHhhC
Confidence 8999999987 8999999999999999999999999998 599999999999998876
No 102
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.24 E-value=1e-10 Score=99.62 Aligned_cols=102 Identities=30% Similarity=0.438 Sum_probs=87.9
Q ss_pred CceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCccc
Q 007694 427 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 506 (593)
Q Consensus 427 ~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 506 (593)
++..+++++++.++.+.|.+.+...+||+| +++++|+++.+++.... ...++.++|.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~~-----------------~~~~~~~~~~~~~-- 61 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRAH-----------------PNRLVADAMTREV-- 61 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhccc-----------------ccCCHHHHccCCC--
Confidence 466789999999999999888888999998 58999999999987531 1125777887655
Q ss_pred cCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHH
Q 007694 507 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIW 564 (593)
Q Consensus 507 ~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~ 564 (593)
.++++++++.++++.|.+++.+.+||+| +++++|+||++|++
T Consensus 62 -------~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---------~~~~~G~it~~~l~ 103 (105)
T cd04599 62 -------VTISPEASLLEAKRLMEEKKIERLPVLR---------ERKLVGIITKGTIA 103 (105)
T ss_pred -------EEECCCCCHHHHHHHHHHcCCCEeeEEE---------CCEEEEEEEHHHhc
Confidence 8899999999999999999999999998 48999999999986
No 103
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.24 E-value=9.8e-11 Score=100.10 Aligned_cols=105 Identities=23% Similarity=0.389 Sum_probs=90.0
Q ss_pred cCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCcc
Q 007694 426 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGIS 505 (593)
Q Consensus 426 ~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~ 505 (593)
+++.+++.+.++.++.+.+.+.+...+||+|+ ++++|+++.+|+... . ...+++++|.+.+
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~~----~-------------~~~~~~~~~~~~~- 62 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLGK----D-------------PDETVEEIMSKDL- 62 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhcc----C-------------ccccHHHhCCCCC-
Confidence 45778999999999999998877788999987 999999999998642 0 1236788887655
Q ss_pred ccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 506 YRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 506 ~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
.++.+++++.++++.|.+++.+.+||+|+ +|+++|+|+.+|+++
T Consensus 63 --------~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--------~g~~~Gvi~~~di~~ 106 (107)
T cd04610 63 --------VVAVPEMDIMDAARVMFRTGISKLPVVDE--------NNNLVGIITNTDVIR 106 (107)
T ss_pred --------eEECCCCCHHHHHHHHHHhCCCeEeEECC--------CCeEEEEEEHHHhhc
Confidence 78999999999999999999999999997 789999999999875
No 104
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.24 E-value=1.1e-10 Score=100.24 Aligned_cols=108 Identities=22% Similarity=0.269 Sum_probs=88.9
Q ss_pred CceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCccc
Q 007694 427 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 506 (593)
Q Consensus 427 ~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 506 (593)
++.++.+++++.++.+.|.+.+.+.+||+|+ ++++|+++.+|+.+.+..... ....++.++|.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~-----------~~~~~~~~~~~~~~-- 67 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEGKA-----------KFSLPVREVMGEPL-- 67 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhcccc-----------ccCcCHHHHhcCCC--
Confidence 4678899999999999999888899999997 999999999999887543321 01236778887655
Q ss_pred cCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 507 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 507 ~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
..+++++++.++.++|.+ . ..+||+++ +++++|+||++|+++
T Consensus 68 -------~~v~~~~~l~~~~~~~~~-~-~~~~vv~~--------~~~~~Gvvt~~di~~ 109 (110)
T cd04609 68 -------PTVDPDAPIEELSELLDR-G-NVAVVVDE--------GGKFVGIITRADLLK 109 (110)
T ss_pred -------ceeCCCCcHHHHHHHHHh-C-CceeEEec--------CCeEEEEEeHHHhhc
Confidence 789999999999999998 3 34789987 789999999999875
No 105
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.23 E-value=1.1e-10 Score=102.43 Aligned_cols=120 Identities=22% Similarity=0.316 Sum_probs=93.5
Q ss_pred CceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCccc
Q 007694 427 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 506 (593)
Q Consensus 427 ~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 506 (593)
++.++++++++.++.+.|.+.+++.+||+|+ ++++|+++.+++.+.+.+...... .+.........++.++|.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-- 77 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAISPFLGTAG-ETEKDLATLNRRAHQIMTRDP-- 77 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHHHHHhcccc-chHHHHHHHHhHHHHhhcCCC--
Confidence 4678899999999999999888899999997 899999999999876543111000 000000001236778887655
Q ss_pred cCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 507 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 507 ~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
..+.+++++.++++.|.+++.+.+||+|+ +++++|++|++|+++
T Consensus 78 -------~~v~~~~~l~~~~~~~~~~~~~~~~vv~~--------~~~~~Gvit~~dll~ 121 (122)
T cd04637 78 -------ITVSPDTPVDEASKLLLENSISCLPVVDE--------NGQLIGIITWKDLLK 121 (122)
T ss_pred -------eeeCCCCcHHHHHHHHHHcCCCeEeEECC--------CCCEEEEEEHHHhhh
Confidence 88999999999999999999999999987 689999999999875
No 106
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.23 E-value=8.1e-11 Score=126.70 Aligned_cols=120 Identities=23% Similarity=0.311 Sum_probs=104.6
Q ss_pred hhhhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCC---CeEEEEEeHHHHHHHHhhccCCCCCCCCcccccc
Q 007694 416 EELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGE---DFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVN 492 (593)
Q Consensus 416 ~~i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~---~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~ 492 (593)
.-.+.++.|.+++.++++++++.++.+.|.+++++.+||+|++ ++++|+|+.+|+.... . .
T Consensus 78 ~Vk~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~---~-------------~ 141 (450)
T TIGR01302 78 RVKRAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVK---D-------------K 141 (450)
T ss_pred hhccccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhh---c-------------C
Confidence 3345788899999999999999999999999999999999987 7999999999986431 0 1
Q ss_pred ccchhhhhcc-CccccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHHHH
Q 007694 493 TCLVSSICTR-GISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLR 568 (593)
Q Consensus 493 ~~~V~dim~~-~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~~~ 568 (593)
..+++++|++ ++ +++++++++.++++.|.+++.+.+||+|+ +|+++|+||++|+++...
T Consensus 142 ~~~V~dvm~~~~~---------~~V~~~~sl~eal~~m~~~~~~~lpVVDe--------~G~lvGiVT~~DIl~~~~ 201 (450)
T TIGR01302 142 GKPVSEVMTREEV---------ITVPEGIDLEEALKVLHEHRIEKLPVVDK--------NGELVGLITMKDIVKRRK 201 (450)
T ss_pred CCCHHHhhCCCCC---------EEECCCCcHHHHHHHHHHcCCCeEEEEcC--------CCcEEEEEEhHHhhhccc
Confidence 2478899983 44 89999999999999999999999999998 899999999999998764
No 107
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.23 E-value=1.2e-10 Score=99.38 Aligned_cols=100 Identities=23% Similarity=0.193 Sum_probs=86.0
Q ss_pred eEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCccccC
Q 007694 429 VKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISYRG 508 (593)
Q Consensus 429 ~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~~~ 508 (593)
.++++++++.++.+.+.+.+...+||+|+ ++++|+++.+|+.+.. ..++.++|.+++
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~------------------~~~~~~~~~~~~---- 60 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENAT------------------YGDVVDYIVRGI---- 60 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhhc------------------ccchhhhhhcCC----
Confidence 46789999999999999888899999998 9999999999987531 114566776554
Q ss_pred CCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 509 RERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 509 ~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
.++++++++.++++.|.+++.+.+||+| +|+++|+||++|+.+
T Consensus 61 -----~~v~~~~~l~~a~~~~~~~~~~~~~Vv~---------~~~~iGvit~~dl~~ 103 (104)
T cd04594 61 -----PYVRLTSTAEEAWEVMMKNKTRWCPVVD---------DGKFKGIVTLDSILD 103 (104)
T ss_pred -----cEEcCCCCHHHHHHHHHHcCcceEEEEE---------CCEEEEEEEHHHhhc
Confidence 7899999999999999999999999998 489999999999865
No 108
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.23 E-value=8.7e-11 Score=127.18 Aligned_cols=116 Identities=18% Similarity=0.212 Sum_probs=101.5
Q ss_pred hhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCC---CeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccch
Q 007694 420 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGE---DFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLV 496 (593)
Q Consensus 420 v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~---~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V 496 (593)
.++.|..++.++++++++.++.+.|.+.+++.+||+|++ ++++|+|+.+|+... . ....++
T Consensus 98 ~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~--~--------------~~~~~V 161 (495)
T PTZ00314 98 FENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFV--K--------------DKSTPV 161 (495)
T ss_pred cccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhc--c--------------cCCCCH
Confidence 677888999999999999999999999999999999974 799999999998632 1 113478
Q ss_pred hhhhcc--CccccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHHHH
Q 007694 497 SSICTR--GISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLR 568 (593)
Q Consensus 497 ~dim~~--~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~~~ 568 (593)
+|+|++ ++ .++++++++.+++++|.+++.+.+||+|+ +++++|+||++|+++...
T Consensus 162 ~diMt~~~~l---------vtv~~~~sl~eAl~lm~e~~i~~LPVVd~--------~g~liGIIT~~DIl~~~~ 218 (495)
T PTZ00314 162 SEVMTPREKL---------VVGNTPISLEEANEVLRESRKGKLPIVND--------NGELVALVSRSDLKKNRG 218 (495)
T ss_pred HHhhCCcCCc---------eEeCCCCCHHHHHHHHHHcCCCeEEEEcC--------CCcEEEEEEehHhhhccc
Confidence 999986 44 78899999999999999999999999998 789999999999987754
No 109
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.22 E-value=1.5e-10 Score=126.00 Aligned_cols=118 Identities=26% Similarity=0.279 Sum_probs=103.9
Q ss_pred hhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchh
Q 007694 418 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVS 497 (593)
Q Consensus 418 i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~ 497 (593)
..+++.|.+++.++++++++.++.+.|.+++++.+||+|++++++|+|+.+|+.... . ...+++
T Consensus 87 k~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~---~-------------~~~~V~ 150 (486)
T PRK05567 87 KRSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFET---D-------------LSQPVS 150 (486)
T ss_pred hhhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhcc---c-------------CCCcHH
Confidence 457889999999999999999999999999999999999999999999999985421 0 124788
Q ss_pred hhhc-cCccccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHHHH
Q 007694 498 SICT-RGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLR 568 (593)
Q Consensus 498 dim~-~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~~~ 568 (593)
|+|. +++ +++++++++.++++.|.+++.+.+||+|+ +++++|+||++|+++...
T Consensus 151 dim~~~~~---------v~v~~~~sl~eal~~m~~~~~~~lpVVDe--------~g~lvGiIT~~DLl~~~~ 205 (486)
T PRK05567 151 EVMTKERL---------VTVPEGTTLEEALELLHEHRIEKLPVVDD--------NGRLKGLITVKDIEKAEE 205 (486)
T ss_pred HHcCCCCC---------EEECCCCCHHHHHHHHHHcCCCEEEEEcC--------CCcEEEEEEhHHhhhhhh
Confidence 8987 444 89999999999999999999999999998 899999999999998764
No 110
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.21 E-value=1.9e-10 Score=100.77 Aligned_cols=119 Identities=26% Similarity=0.315 Sum_probs=92.6
Q ss_pred CceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCccc
Q 007694 427 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 506 (593)
Q Consensus 427 ~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 506 (593)
++..+.+++++.++.+.|.+.+...+||+|+ ++++|+++.+++...+......+... ....+....++.++|.+++
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-- 77 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALRSFRPLVRDR-HQERRIRNLPVSDIMTRPV-- 77 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhhhhhhhcccch-hhhhhhhccCHHHHccCCc--
Confidence 5678899999999999998888889999997 99999999999987644221100000 0000112346777887655
Q ss_pred cCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 507 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 507 ~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
.++.+++++.+++++|.+.+.+.+||+| +++++|+||++|+++
T Consensus 78 -------~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---------~~~~~Gvi~~~dl~~ 120 (121)
T cd04633 78 -------ITIEPDTSVSDVASLMLENNIGGLPVVD---------DGKLVGIVTRTDILR 120 (121)
T ss_pred -------eEECCCCcHHHHHHHHHHcCCCcccEEE---------CCEEEEEEEHHHhhc
Confidence 8899999999999999999999999998 478999999999875
No 111
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.21 E-value=1.7e-10 Score=103.42 Aligned_cols=130 Identities=54% Similarity=0.885 Sum_probs=88.0
Q ss_pred CceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCccc
Q 007694 427 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 506 (593)
Q Consensus 427 ~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 506 (593)
++.++++++++.++.+.|.+.+...+||+|++++++|+++.+|+.+.+.....................+.++|.+....
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 81 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGISY 81 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhhhh
Confidence 57889999999999999988888999999999999999999999987654332100000000011123345565421100
Q ss_pred cCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEE
Q 007694 507 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVA 556 (593)
Q Consensus 507 ~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvG 556 (593)
......+.++.+++++.+|++.|.+++.+.+||+|++.+.-+.+..++.|
T Consensus 82 ~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~~~~~~~~~~~~~ 131 (133)
T cd04592 82 GGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGVDRRRRGRRKVLG 131 (133)
T ss_pred cccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCcCccccccccccc
Confidence 00012248899999999999999999999999999865433333344444
No 112
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.18 E-value=2.2e-10 Score=98.15 Aligned_cols=99 Identities=19% Similarity=0.270 Sum_probs=85.4
Q ss_pred CceEecCCCCHHHHHHHHHhcCCcEEEEEeC---CCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccC
Q 007694 427 DFVKVALTVTLKEAIESMKDGQQNCVLVVNG---EDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRG 503 (593)
Q Consensus 427 ~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~---~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~ 503 (593)
+...+++++++.++.+.+.+.++..+||+|+ +++++|+++.+|+.....+ +|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~----------------------~m~~~ 60 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN----------------------YIDPS 60 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH----------------------hccCC
Confidence 4567899999999999998888888999998 6899999999999765311 45444
Q ss_pred ccccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 504 ISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 504 ~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
+ .++++++++.++++.|.+++.+.+||++ +|+++|+||++|+.+
T Consensus 61 ~---------~~v~~~~~l~~~~~~~~~~~~~~~pVv~---------~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 61 P---------FTVSPRTSLEKVHQLFRKLGLRHLLVVD---------EGRLVGIITRKDLLK 104 (105)
T ss_pred C---------ceECCCCcHHHHHHHHHHcCCCEEEEEE---------CCeEEEEEEhhhhhc
Confidence 3 7899999999999999999999999996 589999999999875
No 113
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.18 E-value=3.9e-10 Score=96.48 Aligned_cols=111 Identities=34% Similarity=0.458 Sum_probs=92.2
Q ss_pred CceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCccc
Q 007694 427 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 506 (593)
Q Consensus 427 ~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 506 (593)
++.+++.+.++.++.+.|.+.+...+||+|++++++|+++.+|+...+...... ....+.++|..++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~-----------~~~~~~~~~~~~~-- 68 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLD-----------PLVTVGDVMTRDV-- 68 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhccCC-----------ccccHHHHhcCCc--
Confidence 456789999999999999988888999999889999999999998875443220 0112566676654
Q ss_pred cCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 507 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 507 ~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
..+.+++++.++++.|.+.+.+.+||+|+ +++++|+++++|+++
T Consensus 69 -------~~~~~~~~~~~~~~~~~~~~~~~~~V~~~--------~~~~~G~i~~~dl~~ 112 (113)
T cd02205 69 -------VTVSPDTSLEEAAELMLEHGIRRLPVVDD--------EGRLVGIVTRSDILR 112 (113)
T ss_pred -------eecCCCcCHHHHHHHHHHcCCCEEEEEcC--------CCcEEEEEEHHHhhc
Confidence 78889999999999999999999999997 799999999999865
No 114
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.17 E-value=3.8e-10 Score=98.49 Aligned_cols=113 Identities=15% Similarity=0.135 Sum_probs=90.0
Q ss_pred CceEecCCCCHHHHHHHHHhcC-CcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCcc
Q 007694 427 DFVKVALTVTLKEAIESMKDGQ-QNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGIS 505 (593)
Q Consensus 427 ~~~~v~~~~~v~~~~~~l~~~~-~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~ 505 (593)
++.++++++++.++.+.+.+.+ ++.+||+|+ ++++|+++.+|+...+....... .....++.++|.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~~~~~~~--------~~~~~~v~~~~~~~~- 71 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLSTPYGRA--------LYGKKPVSEVMDPDP- 71 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHhchhhHH--------HHcCCcHHHhcCCCc-
Confidence 5677899999999999998776 789999998 99999999999987654321000 001246888887765
Q ss_pred ccCCCCcceEecCCCCHHHHHHHHHHcCCc---ccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 506 YRGRERGLLTCYPDTDLAIAKELMEAKGIK---QLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 506 ~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~---~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
..+.+++++.++++.|.+.+.+ ..||+++ +++++|+||++|+++
T Consensus 72 --------~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~--------~~~~~Gvvs~~di~~ 118 (119)
T cd04598 72 --------LIVEADTPLEEVSRLATGRDSQNLYDGFIVTE--------EGRYLGIGTVKDLLR 118 (119)
T ss_pred --------EEecCCCCHHHHHHHHHcCCcccccccEEEee--------CCeEEEEEEHHHHhc
Confidence 8899999999999999998864 3468887 799999999999864
No 115
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.17 E-value=3.7e-10 Score=98.83 Aligned_cols=119 Identities=27% Similarity=0.327 Sum_probs=92.8
Q ss_pred CceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCccc
Q 007694 427 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 506 (593)
Q Consensus 427 ~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 506 (593)
++.++++++++.++.+.+.+.+++.+||+|++++++|+++.+++..............+. ......++.++|.+++
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~-- 77 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHEL--YLLLKMPVKEIMTKDV-- 77 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccchhhhh--hhhcCcCHHHHhhCCC--
Confidence 467889999999999999888888999999889999999999987654321110000000 0012346788887655
Q ss_pred cCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 507 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 507 ~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
.++.+++++.++++.|.+.+.+.+||+| +++++|++|.+|+++
T Consensus 78 -------~~i~~~~~l~~~~~~~~~~~~~~~~V~~---------~~~~~Gvv~~~di~~ 120 (121)
T cd04584 78 -------ITVHPLDTVEEAALLMREHRIGCLPVVE---------DGRLVGIITETDLLR 120 (121)
T ss_pred -------eEECCCCcHHHHHHHHHHcCCCeEEEee---------CCEEEEEEEHHHhhc
Confidence 7899999999999999999999999998 478999999999875
No 116
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.14 E-value=5.3e-10 Score=101.47 Aligned_cols=120 Identities=25% Similarity=0.330 Sum_probs=91.8
Q ss_pred CceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCC--------Cccc---------
Q 007694 427 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGD--------SIAS--------- 489 (593)
Q Consensus 427 ~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~--------~~~~--------- 489 (593)
++.++++++++.++.+.|.+.++..+||+|+ ++++|+++.+|+...+........... ....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEETK 80 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHHH
Confidence 5678899999999999999888999999997 999999999999887653321000000 0000
Q ss_pred ----cccccchhhhhccCccccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 490 ----DVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 490 ----~~~~~~V~dim~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
+....++.++|.+++ .++++++++.++++.|.+.+.+.+||++ +++++|++|++|+++
T Consensus 81 ~~~~~~~~~~v~~~~~~~~---------~~v~~~~~l~~a~~~~~~~~~~~~~Vv~---------~~~~~Gvvt~~dl~~ 142 (143)
T cd04634 81 RALTDAGKMKVRDIMTKKV---------ITISPDASIEDAAELMVRHKIKRLPVVE---------DGRLVGIVTRGDIIE 142 (143)
T ss_pred HHHHHHhcCCHHHHcCCCC---------eEECCCCcHHHHHHHHHHcCCCEEEEEE---------CCEEEEEEEHHHhhc
Confidence 001234666665544 8999999999999999999999999998 478999999999864
No 117
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.14 E-value=2.4e-10 Score=126.90 Aligned_cols=136 Identities=24% Similarity=0.314 Sum_probs=105.5
Q ss_pred hhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCC-----------------
Q 007694 418 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSD----------------- 480 (593)
Q Consensus 418 i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~----------------- 480 (593)
.+++++|++++.++++++++.++.+.|.+++.+.+||+|++++++|+|+.+|+.+.+.+....
T Consensus 68 ~~V~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~i~~~L 147 (546)
T PRK14869 68 PQVRDLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMDILDPEILSKSPTSLENIIRTL 147 (546)
T ss_pred CcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHHHHHhc
Confidence 689999999999999999999999999999999999999999999999999998864432210
Q ss_pred ----------C---------------------CC------CCCc--------------------c--c------------
Q 007694 481 ----------N---------------------SK------GDSI--------------------A--S------------ 489 (593)
Q Consensus 481 ----------~---------------------~~------~~~~--------------------~--~------------ 489 (593)
. .. ++.. . .
T Consensus 148 ~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la~~~~i~ 227 (546)
T PRK14869 148 DGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVLELAKENGVT 227 (546)
T ss_pred CcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHhCCCe
Confidence 0 00 0000 0 0
Q ss_pred ------c--------ccccchhhhhccCccccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEE
Q 007694 490 ------D--------VNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIV 555 (593)
Q Consensus 490 ------~--------~~~~~V~dim~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lv 555 (593)
| ....+|+++|++ +++.++++++++.++.+.|.+++.+++||+|+ +|+++
T Consensus 228 ii~t~~dt~~t~~~l~~~~~V~~iM~~--------~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~--------~g~lv 291 (546)
T PRK14869 228 VISTPYDTFTTARLINQSIPVSYIMTT--------EDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDE--------DGKVV 291 (546)
T ss_pred EEEecccHHHHHHHhhcCCCHHHhccC--------CCcEEECCCCcHHHHHHHHHhcCCCceEEEcC--------CCCEE
Confidence 0 011234444440 34589999999999999999999999999997 79999
Q ss_pred EEEehhhHHHHHHH
Q 007694 556 AILHYDSIWNCLRE 569 (593)
Q Consensus 556 GiIt~~di~~~~~~ 569 (593)
|+||++|+++..++
T Consensus 292 Giit~~dl~~~~~~ 305 (546)
T PRK14869 292 GVISRYHLLSPVRK 305 (546)
T ss_pred EEEEHHHhhccccC
Confidence 99999999986553
No 118
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.13 E-value=9.4e-10 Score=95.53 Aligned_cols=112 Identities=31% Similarity=0.438 Sum_probs=95.5
Q ss_pred hhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhc
Q 007694 422 RAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICT 501 (593)
Q Consensus 422 ~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~ 501 (593)
+.|.+++.++.++.++.++...|.+++...+||++. ++++|+++..|+...+...... ..++.++|.
T Consensus 3 ~~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~-~~l~Giit~~di~~~~~~~~~~------------~~~v~~v~~ 69 (117)
T COG0517 3 DIMTKDVITVKPDTSVRDALLLMSENGVSAVPVVDD-GKLVGIITERDILRALAAGGKR------------LLPVKEVMT 69 (117)
T ss_pred ccccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccCCc------------cccHHHhcc
Confidence 345578899999999999999999999999999974 4899999999999986554321 115788888
Q ss_pred cCccccCCCCcceEecCCCCHHHHHHHHHH-cCCcccceeecchhhhhccCC-eEEEEEehhhH
Q 007694 502 RGISYRGRERGLLTCYPDTDLAIAKELMEA-KGIKQLPVIKRSRELQRRRKQ-RIVAILHYDSI 563 (593)
Q Consensus 502 ~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~-~~~~~lpVvd~~~~~~~~~~~-~lvGiIt~~di 563 (593)
+++ .++.+++++.++.+.|.+ .+.+.+||+|+ ++ +++|++|++|+
T Consensus 70 ~~~---------~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~--------~~~~lvGivt~~di 116 (117)
T COG0517 70 KPV---------VTVDPDTPLEEALELMVERHKIRRLPVVDD--------DGGKLVGIITLSDI 116 (117)
T ss_pred CCc---------EEECCCCCHHHHHHHHHHHcCcCeEEEEEC--------CCCeEEEEEEHHHc
Confidence 654 899999999999999999 69999999997 65 99999999986
No 119
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.12 E-value=9.3e-10 Score=94.01 Aligned_cols=104 Identities=29% Similarity=0.359 Sum_probs=87.3
Q ss_pred CceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCccc
Q 007694 427 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISY 506 (593)
Q Consensus 427 ~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~ 506 (593)
+..++.+++++.++.+.+.+.++..+||+|++++++|+++.+++... .. ..++.++|..++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~---~~--------------~~~~~~~~~~~~-- 62 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRN---PE--------------EEQLALLMTRDP-- 62 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhc---cc--------------cchHHHHhcCCC--
Confidence 35678889999999999988888899999988999999999998642 00 124667776554
Q ss_pred cCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 507 RGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 507 ~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
.++.+++++.++++.|.+.+.+.+||+|+ ++++|+||++|+++
T Consensus 63 -------~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~---------~~~~G~it~~d~~~ 105 (106)
T cd04638 63 -------PTVSPDDDVKEAAKLMVENNIRRVPVVDD---------GKLVGIVTVADIVR 105 (106)
T ss_pred -------ceECCCCCHHHHHHHHHHcCCCEEEEEEC---------CEEEEEEEHHHhhc
Confidence 78899999999999999999999999984 68999999999864
No 120
>PRK11573 hypothetical protein; Provisional
Probab=99.06 E-value=7.7e-10 Score=117.65 Aligned_cols=131 Identities=11% Similarity=0.131 Sum_probs=107.0
Q ss_pred HHhhhhhhhhhhcc--CceEecCCCCHHHHHHHHHhcCCcEEEEEeCC-CeEEEEEeHHHHHHHHhhccCCCCCCCCccc
Q 007694 413 MLLEELKVSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVNGE-DFLEGILTYGDIKRCLSKLSSDNSKGDSIAS 489 (593)
Q Consensus 413 ~~l~~i~v~~~M~~--~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~-~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~ 489 (593)
-.+.+.+++++|++ ++..++.+.+++++.+.+.+++|+.+||++++ +.++|+++.+|+...+.+...
T Consensus 182 l~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~~---------- 251 (413)
T PRK11573 182 LDLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKE---------- 251 (413)
T ss_pred hccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccCc----------
Confidence 44667899999997 68889999999999999999999999999875 789999999999875432111
Q ss_pred cccccchhhhhccCccccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHHHHH
Q 007694 490 DVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLRE 569 (593)
Q Consensus 490 ~~~~~~V~dim~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~~~~ 569 (593)
.....+.+++++ +..|++++++.++++.|++.+.+...|+|+ .|...|+||.+|+++.+-.
T Consensus 252 -~~~~~l~~~~r~----------~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDE--------yG~~~GiVTleDilEeivG 312 (413)
T PRK11573 252 -FTKENMLRAADE----------IYFVPEGTPLSTQLVKFQRNKKKVGLVVDE--------YGDIQGLVTVEDILEEIVG 312 (413)
T ss_pred -CCHHHHHhhccC----------CeEeCCCCcHHHHHHHHHhcCCeEEEEEec--------CCCeEEEeeHHHHHHHHhC
Confidence 001234444443 378999999999999999999999999998 8999999999999998876
Q ss_pred HHH
Q 007694 570 EVN 572 (593)
Q Consensus 570 ~~~ 572 (593)
++.
T Consensus 313 ei~ 315 (413)
T PRK11573 313 DFT 315 (413)
T ss_pred CCC
Confidence 654
No 121
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=99.03 E-value=1.9e-08 Score=108.28 Aligned_cols=175 Identities=22% Similarity=0.242 Sum_probs=121.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CCc---c--hHhhhhHHH---HHHHHhhcccccccchhh
Q 007694 154 AAELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFG-LPP---V--VCPALGGLG---AGIIALRYPGILYWGFTN 224 (593)
Q Consensus 154 ~~~l~~~~llGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~-~~~---~--~~~~iggl~---~g~~~~~~p~~~~~g~~~ 224 (593)
..+|.+.++||++.+++++..=..+..+.+.+.++-+.+. .+. | |..-..|++ .++.-+.-|+..|+|.++
T Consensus 93 ~eDW~flalLG~imAlvS~~mD~ai~~~~~a~~~ly~~~~~~~~yl~yl~Wv~y~v~Li~fSA~f~h~iapQAvGSGIPE 172 (931)
T KOG0476|consen 93 GEDWFFLALLGVIMALVSIGMDMAIESLQHAQVWLYRELGSSHSYLAYLSWVGYPVGLVLFSAGFCHYIAPQAVGSGIPE 172 (931)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHheeccccccCCChh
Confidence 3677888999999999999988887777666554433221 111 1 111122222 222234569999999999
Q ss_pred HHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHhhccCCccceehHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcchHH
Q 007694 225 VEEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQA 304 (593)
Q Consensus 225 ~~~~l~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~p~~~~~~~~~~ 304 (593)
++.++++-.. .-++-+-.++.|++...+++|||.|-|.++|-+.|++.+...++++..-.+.. +..+ .....-
T Consensus 173 mKtIlrGv~L----keYLt~KtlvAKviGLT~tLGsGlpiGKeGPFVHiasivA~~l~k~~a~~~~g-~~en--esR~~E 245 (931)
T KOG0476|consen 173 MKTILRGVIL----KEYLTLKTLVAKVIGLTLTLGSGLPIGKEGPFVHIASIVAALLSKVTACQFGG-FFEN--ESRNME 245 (931)
T ss_pred HHHHHHhhhH----HhhhhHHHHHHHHHHhhhhhccCCCcCCCCCchhHHHHHHHHHHHHHHhhccc-cccC--cchHHH
Confidence 9988864211 11233456788999999999999999999999999999999998876422221 1221 123345
Q ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHhCCc
Q 007694 305 YALVGMAATLASVCSVPLTSVLLLFELTRDY 335 (593)
Q Consensus 305 ~a~~G~aa~~a~~~~apls~~vi~~E~tg~~ 335 (593)
+..+|.|-+.|..+.||+.++++-+|.|..|
T Consensus 246 mLaaaCAVGVactFsAPiGgVLfSIEvTS~y 276 (931)
T KOG0476|consen 246 MLAAACAVGVACTFSAPIGGVLFSIEVTSTY 276 (931)
T ss_pred HHHHHhhhhheeeecCccceeEEEEEEeeee
Confidence 6677777788899999999999999998743
No 122
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=98.92 E-value=5e-09 Score=112.47 Aligned_cols=130 Identities=19% Similarity=0.200 Sum_probs=106.2
Q ss_pred HHhhhhhhhhhhcc--CceEecCCCCHHHHHHHHHhcCCcEEEEEe-CCCeEEEEEeHHHHHHHHhhccCCCCCCCCccc
Q 007694 413 MLLEELKVSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVN-GEDFLEGILTYGDIKRCLSKLSSDNSKGDSIAS 489 (593)
Q Consensus 413 ~~l~~i~v~~~M~~--~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd-~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~ 489 (593)
-.+.+.+++++|++ ++..++.+.++.++.+.+.+++|+.+||++ +.+.++|+++.+|++....+... .
T Consensus 201 ~~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~-~-------- 271 (429)
T COG1253 201 LDLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS-D-------- 271 (429)
T ss_pred hccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc-c--------
Confidence 44667889999997 678888999999999999999999999999 45789999999999987544321 0
Q ss_pred cccccchhhhhccCccccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHHHHH
Q 007694 490 DVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLRE 569 (593)
Q Consensus 490 ~~~~~~V~dim~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~~~~ 569 (593)
........ +++.|++++++.++++.|++.+.+...|+|+ .|...|+||.+|+++.+-.
T Consensus 272 ----~~~~~~~~----------~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDE--------yG~~~GlVTleDIiEeIvG 329 (429)
T COG1253 272 ----LDLRVLVR----------PPLFVPETLSLSDLLEEFREERTHMAIVVDE--------YGGVEGLVTLEDIIEEIVG 329 (429)
T ss_pred ----cchhhccc----------CCeEecCCCcHHHHHHHHHHhCCeEEEEEEc--------CCCeEEEeEHHHHHHHHhC
Confidence 00111111 2489999999999999999999999999998 8999999999999998876
Q ss_pred HHHh
Q 007694 570 EVNH 573 (593)
Q Consensus 570 ~~~~ 573 (593)
+...
T Consensus 330 ei~d 333 (429)
T COG1253 330 EIPD 333 (429)
T ss_pred CCcC
Confidence 6554
No 123
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.78 E-value=7.9e-09 Score=109.12 Aligned_cols=195 Identities=18% Similarity=0.235 Sum_probs=127.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhh-h-----cCCCcchHhhh--h-HHHHHHH-Hhhcccccc
Q 007694 155 AELPLYLILGMLCGVVSVVFTRLVAWFTKSF-----DFIKE-K-----FGLPPVVCPAL--G-GLGAGII-ALRYPGILY 219 (593)
Q Consensus 155 ~~l~~~~llGv~~Gl~g~~f~~~~~~~~~~~-----~~~~~-~-----~~~~~~~~~~i--g-gl~~g~~-~~~~p~~~~ 219 (593)
.-|.++.++|++.|++|.+-....+.+..+. ..+.+ + +..+.+.+..+ + -++.+++ .+..|..-|
T Consensus 86 ~kW~~~~lIGi~TgLva~fidl~Ven~ag~Kf~~v~~~v~~~~s~~g~~~~~~l~~~g~Nl~lv~~as~lv~~iaP~AAG 165 (762)
T KOG0474|consen 86 VKWMVCFLIGICTGLVALFIDLFVENFAGLKFGVVQNSVEECRSQKGCLALSLLVLLGFNLVLVFLASVLVAYIAPVAAG 165 (762)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhccccHHHHHHHHHHHhHHHHHHHHHHHHeechhccC
Confidence 4467789999999999998877666554321 11111 1 00011111110 0 0112222 356799999
Q ss_pred cchhhHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHhhccCCccceehHHHHHHHHHHHHHHHHHHHHHh---hhCCCC
Q 007694 220 WGFTNVEEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIIN---SAIPGN 296 (593)
Q Consensus 220 ~g~~~~~~~l~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~---~~~p~~ 296 (593)
+|.++++-.+++-+.+ .+ +.+..++.|++.+..+.+.|.-.|.++|.++.||++|+.++|.=..-.+ -+++..
T Consensus 166 SGIPevK~YLNGV~iP---~i-vrl~TL~~Ki~Gvi~sV~gGL~~GKEGPMIHsGa~Vaagl~QG~S~~~r~~~r~fr~F 241 (762)
T KOG0474|consen 166 SGIPEVKCYLNGVKIP---GI-VRLRTLIVKILGVIFSVAGGLAVGKEGPMIHSGSVVAAGLGQGGSTSLRKDWRWFRYF 241 (762)
T ss_pred CCCchhhhhhcCccCc---ce-eehhhhHHhHhhhhhhhhhhhhccCcCCeeehhHHHHhcccCCCccchhhhhhhhhhh
Confidence 9999999888653322 21 2335567899999999999999999999999999999999874211100 111212
Q ss_pred CCCcchHHHHHHHHHHHHHHhccchhHHHHHHHHHhCCc---hhHHHHHHHHHHHHHHHH
Q 007694 297 VAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDY---RILLPLMGAVGLAIWVPS 353 (593)
Q Consensus 297 ~~~~~~~~~a~~G~aa~~a~~~~apls~~vi~~E~tg~~---~~~~P~~ia~~ia~~v~~ 353 (593)
.+..+..-++.||+||+.++++|||+.+++|.+|-.-++ .++.=+.++++++.++-+
T Consensus 242 rnDrdrRD~VscGaAAGVaAAF~APvGGvLFaLEE~aS~Wnq~L~WR~fFss~i~~f~l~ 301 (762)
T KOG0474|consen 242 RNDRDRRDLVSCGAAAGVAAAFRAPVGGVLFALEEGASWWNQALLWRTFFSSAIVAFVLR 301 (762)
T ss_pred cccchhhhhhhcchHHhHHHHhCCCccceEEEechhhHHHHhhHHHHHHHHhHHHHHhHH
Confidence 234578899999999999999999999999999965443 355555555555554444
No 124
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.77 E-value=1.8e-08 Score=75.85 Aligned_cols=56 Identities=32% Similarity=0.508 Sum_probs=51.2
Q ss_pred hhhhhccCccccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHHHH
Q 007694 496 VSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLR 568 (593)
Q Consensus 496 V~dim~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~~~ 568 (593)
|+|+|++++ .++++++++.++++.|.+++.+++||+|+ +++++|+||++|+++++.
T Consensus 1 v~~~m~~~~---------~~v~~~~~l~~~~~~~~~~~~~~~~V~d~--------~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMTPPP---------ITVSPDDSLEEALEIMRKNGISRLPVVDE--------DGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSBSSS---------EEEETTSBHHHHHHHHHHHTSSEEEEEST--------TSBEEEEEEHHHHHHHHH
T ss_pred CeECCcCCC---------EEEcCcCcHHHHHHHHHHcCCcEEEEEec--------CCEEEEEEEHHHHHhhhh
Confidence 467888766 89999999999999999999999999998 899999999999998764
No 125
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.77 E-value=2e-08 Score=100.49 Aligned_cols=129 Identities=15% Similarity=0.175 Sum_probs=106.6
Q ss_pred hhhhhhhhhhcc--CceEecCCCCHHHHHHHHHhcCCcEEEEEeCC-CeEEEEEeHHHHHHHHhhccCCCCCCCCccccc
Q 007694 415 LEELKVSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVNGE-DFLEGILTYGDIKRCLSKLSSDNSKGDSIASDV 491 (593)
Q Consensus 415 l~~i~v~~~M~~--~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~-~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~ 491 (593)
++.++|+|+|.+ ++..++.+++.+++.+.+..++|..+|+..++ +..+|+++.+|+.+++.+... .
T Consensus 197 Le~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~-~---------- 265 (423)
T COG4536 197 LENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE-F---------- 265 (423)
T ss_pred cccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCc-c----------
Confidence 578999999987 57788999999999999999999999999765 579999999999999876542 0
Q ss_pred cccchhhhhccCccccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHHHHHHH
Q 007694 492 NTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLREEV 571 (593)
Q Consensus 492 ~~~~V~dim~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~~~~~~ 571 (593)
.-.|+++- ..+|..|++.+++.+-+..|.+++-+.-.|||+ .|.+.|+||.+|+++.+-.+.
T Consensus 266 ---~k~d~~~~-------a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDE--------YG~i~GLVTLEDIlEEIVGdf 327 (423)
T COG4536 266 ---TKEDILRA-------ADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDE--------YGDIQGLVTLEDILEEIVGDF 327 (423)
T ss_pred ---cHhHHHHH-------hcCCeecCCCCcHHHHHHHHHHhcceEEEEEec--------cCcEEeeeeHHHHHHHHhccc
Confidence 12233321 123489999999999999999999999999998 999999999999988765444
Q ss_pred H
Q 007694 572 N 572 (593)
Q Consensus 572 ~ 572 (593)
.
T Consensus 328 t 328 (423)
T COG4536 328 T 328 (423)
T ss_pred c
Confidence 3
No 126
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.66 E-value=1.1e-07 Score=71.55 Aligned_cols=56 Identities=27% Similarity=0.360 Sum_probs=52.9
Q ss_pred hhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHh
Q 007694 420 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLS 475 (593)
Q Consensus 420 v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~ 475 (593)
|+++|++++.++++++++.++.+.|.+++.+.+||+|++++++|+++.+|+++.+.
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence 57899999999999999999999999999999999999999999999999998753
No 127
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=98.57 E-value=3.3e-07 Score=96.06 Aligned_cols=125 Identities=18% Similarity=0.207 Sum_probs=99.3
Q ss_pred CceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccc-hhhhhccCcc
Q 007694 427 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCL-VSSICTRGIS 505 (593)
Q Consensus 427 ~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~-V~dim~~~~~ 505 (593)
++..+..++++.++++.|.+.+.+.+||+|.+++.+|.++..|+........... .+.+ ++.......
T Consensus 238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~~~~~----------~~~~~l~~~~~~~~- 306 (381)
T KOG1764|consen 238 NIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREGTYNN----------LDLSCLSEALSHRP- 306 (381)
T ss_pred hheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcCccCc----------cchhHHHHHhhhcc-
Confidence 5778899999999999999999999999999998999999999988755443311 1112 333222111
Q ss_pred ccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHHHHHHHH
Q 007694 506 YRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLREEVN 572 (593)
Q Consensus 506 ~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~~~~~~~ 572 (593)
....++++|.++++|.++++.+..++.++++|||+ +|+++|+|+..|++.++..+..
T Consensus 307 --~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~--------~~~l~GvvSLsDil~~l~~~p~ 363 (381)
T KOG1764|consen 307 --IRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDE--------DGVLVGVISLSDILSYLVLTPS 363 (381)
T ss_pred --cccCccEEEeecchHHHHHHHHHhcCceEEEEEcC--------CCcEEEEeeHHHHHHHHHhCcc
Confidence 11233589999999999999999999999999998 7999999999999998875543
No 128
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.56 E-value=9.3e-07 Score=92.44 Aligned_cols=112 Identities=23% Similarity=0.311 Sum_probs=91.3
Q ss_pred hccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccC
Q 007694 424 MSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRG 503 (593)
Q Consensus 424 M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~ 503 (593)
|........++.+..++.+.+...+.+...|+|+++++.|.++.+++...+... ..+.+.+.++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----------------~~~~~~~~~~ 311 (363)
T TIGR01186 248 MNTGPITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQARKKA----------------QGLQDVLIDD 311 (363)
T ss_pred ccccceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHhhcC----------------CchhhhhccC
Confidence 333444556677899999999988888999999999999999999987664321 1345555544
Q ss_pred ccccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHHHHH
Q 007694 504 ISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLRE 569 (593)
Q Consensus 504 ~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~~~~ 569 (593)
. .++++++++.+++..+.+++.. +||+|+ +|+++|+||+.++++.+..
T Consensus 312 ~---------~~~~~~~~~~~~~~~~~~~~~~-~~v~~~--------~~~~~g~i~~~~~~~~~~~ 359 (363)
T TIGR01186 312 I---------YTVDAGTLLRETVRKVLKAGIK-VPVVDE--------DQRLVGIVTRGSLVDALYD 359 (363)
T ss_pred C---------ceECCCCcHHHHHHHHHhCCCC-EEEECC--------CCcEEEEEEHHHHHHHHHh
Confidence 3 6889999999999999999998 999998 8999999999999998864
No 129
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.48 E-value=1.3e-06 Score=92.41 Aligned_cols=118 Identities=13% Similarity=0.165 Sum_probs=93.4
Q ss_pred hhhhhhhccCce---EecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCcccccccc
Q 007694 418 LKVSRAMSKDFV---KVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTC 494 (593)
Q Consensus 418 i~v~~~M~~~~~---~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~ 494 (593)
.++.++|.+... ...++.+..++++.|.+.+.+..+|+|+++++.|+++.+++....... .
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----------------~ 337 (400)
T PRK10070 274 FSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALTQQ----------------Q 337 (400)
T ss_pred cchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhhhcC----------------C
Confidence 456677754321 234667889999999999999999999999999999999987653211 1
Q ss_pred chhhhhccCccccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHHHHH
Q 007694 495 LVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLRE 569 (593)
Q Consensus 495 ~V~dim~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~~~~ 569 (593)
.+.+.+.++. .++.+++++.+++..+.+.... +||||+ +|+++|+||+.++++.+.+
T Consensus 338 ~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~-~~v~~~--------~~~~~g~~~~~~~~~~~~~ 394 (400)
T PRK10070 338 GLDAALIDAP---------LAVDAQTPLSELLSHVGQAPCA-VPVVDE--------DQQYVGIISKGMLLRALDR 394 (400)
T ss_pred chhhhhccCC---------ceeCCCCCHHHHHHHHHhCCCc-EEEECC--------CCcEEEEEEHHHHHHHHHh
Confidence 3455554433 7899999999999999997776 999998 8999999999999998864
No 130
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.48 E-value=3.2e-07 Score=92.63 Aligned_cols=110 Identities=25% Similarity=0.281 Sum_probs=94.9
Q ss_pred cCceEecCCCCHHHHHHHHHhcCCcEEEEEeCC---CeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhcc
Q 007694 426 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGE---DFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTR 502 (593)
Q Consensus 426 ~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~---~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~ 502 (593)
.++..++|+.++.++++.-..+.+..+|+.++. .+++|+||.+|+... ++ ....+.|+|.+
T Consensus 116 ~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~-~~---------------~~~~~~~vmt~ 179 (503)
T KOG2550|consen 116 NNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL-ED---------------NSLLVSDVMTK 179 (503)
T ss_pred cCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh-hc---------------ccchhhhhccc
Confidence 467789999999999999999999999999753 589999999998554 22 23578899998
Q ss_pred CccccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHHHH
Q 007694 503 GISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLR 568 (593)
Q Consensus 503 ~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~~~ 568 (593)
++ ++.+.+.+++++-+++++.+...+||||+ +++++-+|+|+|+.+...
T Consensus 180 ~~---------~~~~~gi~l~~~neiL~~~kkGkl~iv~~--------~gelva~~~rtDl~k~~~ 228 (503)
T KOG2550|consen 180 NP---------VTGAQGITLKEANEILKKIKKGKLPVVDD--------KGELVAMLSRTDLMKNRD 228 (503)
T ss_pred cc---------ccccccccHHHHHHHHHhhhcCCcceecc--------CCceeeeeehhhhhhhcC
Confidence 65 78888999999999999999999999998 899999999999977543
No 131
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.44 E-value=4.6e-07 Score=85.18 Aligned_cols=130 Identities=13% Similarity=0.207 Sum_probs=107.7
Q ss_pred HHhhhhhhhhhhcc--CceEecCCCCHHHHHHHHHhcCCcEEEEEeCC-CeEEEEEeHHHHHHHHhhccCCCCCCCCccc
Q 007694 413 MLLEELKVSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVNGE-DFLEGILTYGDIKRCLSKLSSDNSKGDSIAS 489 (593)
Q Consensus 413 ~~l~~i~v~~~M~~--~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~-~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~ 489 (593)
....++.|+|+|.+ ...++..+.++.+.+..+.++.|+.|||+.++ +.+.|++..+||+..+.....
T Consensus 62 m~iadl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~---------- 131 (293)
T COG4535 62 MDIADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAE---------- 131 (293)
T ss_pred HHHHHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcc----------
Confidence 34567899999987 46788999999999999999999999999765 578999999999998644221
Q ss_pred cccccchhhhhccCccccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHHHHH
Q 007694 490 DVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLRE 569 (593)
Q Consensus 490 ~~~~~~V~dim~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~~~~ 569 (593)
.-.+.++.++. +.|+++-.+...++-|+..+.+...|+|+ .|-+-|.||-+|+++.+-.
T Consensus 132 ---~F~i~~lLRPa----------v~VPESKrvd~lLkeFR~~RnHMAIViDE--------fGgVsGLVTIEDiLEqIVG 190 (293)
T COG4535 132 ---PFDIKELLRPA----------VVVPESKRVDRLLKEFRSQRNHMAIVIDE--------FGGVSGLVTIEDILEQIVG 190 (293)
T ss_pred ---cccHHHhcccc----------eecccchhHHHHHHHHHhhcCceEEEEec--------cCCeeeeEEHHHHHHHHhc
Confidence 12456666653 67889999999999999999999999998 8999999999999987765
Q ss_pred HHHh
Q 007694 570 EVNH 573 (593)
Q Consensus 570 ~~~~ 573 (593)
.++.
T Consensus 191 dIED 194 (293)
T COG4535 191 DIED 194 (293)
T ss_pred cccc
Confidence 5544
No 132
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=98.30 E-value=8.4e-07 Score=95.95 Aligned_cols=118 Identities=17% Similarity=0.138 Sum_probs=97.4
Q ss_pred hhhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccch
Q 007694 417 ELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLV 496 (593)
Q Consensus 417 ~i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V 496 (593)
+.+++++|++++.++++++++.++.+.|+++++..+||+|++++++|+|+.+|+.+.+.++. .
T Consensus 194 ~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~~-----------------~ 256 (449)
T TIGR00400 194 EEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSEA-----------------T 256 (449)
T ss_pred CCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhhh-----------------H
Confidence 34699999999999999999999999999999999999999999999999999998865432 2
Q ss_pred hhhhccCccccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHHHHHHHHh
Q 007694 497 SSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLREEVNH 573 (593)
Q Consensus 497 ~dim~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~~~~~~~~ 573 (593)
+|+|+... .+..+++++.++...+.+++..+++|.- +.|+++ ..+++.+.+.+.+
T Consensus 257 ed~~~~~g---------v~~~~~~~l~~~~~~~~~~R~~wL~v~~------------~~~~~t-~~ii~~f~~~l~~ 311 (449)
T TIGR00400 257 EDFYMIAA---------VKPLDDSYFDTSILVMAKNRIIWLLVLL------------VSSTFT-ATIISNYEDLLLS 311 (449)
T ss_pred HHHHHhcC---------CCCCcchhhhchHHHHHHhccchHHHHH------------HHHHHH-HHHHHHHHHHHHH
Confidence 56666543 3334567889999999999999999874 678888 7788877766554
No 133
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=98.17 E-value=1.2e-06 Score=84.97 Aligned_cols=104 Identities=18% Similarity=0.344 Sum_probs=75.3
Q ss_pred cCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCccccCCCC
Q 007694 432 ALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISYRGRER 511 (593)
Q Consensus 432 ~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~~~~~~ 511 (593)
...-+-+|+-+.+++.+. .+| |+++||...+.+.+.+. ..+.....+-.|+|.+++
T Consensus 200 rvgfs~~Dld~aL~~~~E----~lD--------IdrddLe~llr~~elqa-----~~R~~~~LtcadIMSrdV------- 255 (382)
T COG3448 200 RVGFSSEDLDAALQRLGE----TLD--------IDRDDLERLLRETELQA-----LRRRMGELTCADIMSRDV------- 255 (382)
T ss_pred ccCCCHHHHHHHHHhcCc----eec--------CCHHHHHHHHHHHHHHH-----HHHHhccccHHHhcCccc-------
Confidence 334555666666665431 133 67888877765433210 000112356789999987
Q ss_pred cceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHHHHH
Q 007694 512 GLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLRE 569 (593)
Q Consensus 512 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~~~~ 569 (593)
+++++++++.+|.+++.+++++.+||+|+ +.|++|+||++|+.+..+.
T Consensus 256 --vtv~~~ts~dhA~~ll~~H~ikaLPV~d~--------~~rl~GiVt~~dl~~~a~~ 303 (382)
T COG3448 256 --VTVSTDTSIDHARKLLQEHRIKALPVLDE--------HRRLVGIVTQRDLLKHARP 303 (382)
T ss_pred --eecCCcCChHHHHHHHHHcCccccccccc--------ccceeeeeeHHHHhhccCc
Confidence 99999999999999999999999999998 7899999999999885543
No 134
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.11 E-value=2.1e-06 Score=91.46 Aligned_cols=136 Identities=22% Similarity=0.161 Sum_probs=98.8
Q ss_pred hhcccccccchhhHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHhhccCCccceehHHHHHHHHHHHHHHHHHHHHHhh
Q 007694 212 LRYPGILYWGFTNVEEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINS 291 (593)
Q Consensus 212 ~~~p~~~~~g~~~~~~~l~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~ 291 (593)
...|...|+|-.+++-.+++-.... .+-...++.|-++..+++++|.+-|.++|++.++.++|.++.+++...-
T Consensus 150 ~~AP~A~gSGIpEIK~ilSGf~~~~----~lg~~tl~iKsVal~lsvaSGLSlGKEGP~VHiA~c~g~~~s~~f~~~~-- 223 (696)
T KOG0475|consen 150 VVAPYACGSGIPEIKTILSGFIIRG----FLGKWTLLIKSVALCLSVASGLSLGKEGPSVHIATCIGNIFSKIFPKYR-- 223 (696)
T ss_pred heehhhhcCCCccceeeeccchhhh----hhhHHHHhhhhhhheeeeccccccCCCCCceeeeechhhhHhhhhhhhc--
Confidence 3568888999888877665422211 2222345789999999999999999999999999999999987764321
Q ss_pred hCCCCCCCcchHHHHHHHHHHHHHHhccchhHHHHHHHHHhCCc---hhHHHHHHHHHHHHHHHHhhccc
Q 007694 292 AIPGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDY---RILLPLMGAVGLAIWVPSVANQA 358 (593)
Q Consensus 292 ~~p~~~~~~~~~~~a~~G~aa~~a~~~~apls~~vi~~E~tg~~---~~~~P~~ia~~ia~~v~~~~~~~ 358 (593)
. +..-..-+....|||+.+.+++||+.+++|.+|-.-.+ ..+.--..++.+|..+.+.++..
T Consensus 224 ---~--~e~~~reilsAaaAaGvavaFgAPIGGVlFslEev~~~fp~ktlw~sff~aLsAv~~L~~i~pf 288 (696)
T KOG0475|consen 224 ---L--NEAKKREILSAAAAAGVAVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALSAVTALRSINPF 288 (696)
T ss_pred ---c--chhHHHHHHHHHhhccchhhcCCccceeeeehhhhhhcCCccchHHHHHHHHHHHHHHeeeccc
Confidence 1 22445667778899999999999999999999965422 33333455666666666666543
No 135
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=97.92 E-value=2e-05 Score=69.81 Aligned_cols=59 Identities=29% Similarity=0.461 Sum_probs=52.7
Q ss_pred cchhhhhccCccccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHHHHHH
Q 007694 494 CLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLREE 570 (593)
Q Consensus 494 ~~V~dim~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~~~~~ 570 (593)
.+.+++|..++ +.|+||+++.++.++|++++++++||++ +++++|-||.+|+.+..-+.
T Consensus 65 ita~~iM~spv---------v~v~pdDsi~~vv~lM~~~g~SQlPVi~---------~~k~VGsItE~~iv~~~le~ 123 (187)
T COG3620 65 ITAKTIMHSPV---------VSVSPDDSISDVVNLMRDKGISQLPVIE---------EDKVVGSITENDIVRALLEG 123 (187)
T ss_pred EeHhhhccCCe---------eEECchhhHHHHHHHHHHcCCccCceee---------CCeeeeeecHHHHHHHHhcc
Confidence 35677888776 8999999999999999999999999999 58999999999999988554
No 136
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=97.83 E-value=1.8e-05 Score=88.17 Aligned_cols=135 Identities=17% Similarity=0.234 Sum_probs=94.6
Q ss_pred HHhhhhhhhhhhc-cCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhc------cCCCCC--
Q 007694 413 MLLEELKVSRAMS-KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKL------SSDNSK-- 483 (593)
Q Consensus 413 ~~l~~i~v~~~M~-~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~------~~~~~~-- 483 (593)
..-...+++++|+ +++.++++++++.++.+.|.+++++.+||+|++++++|+++++|+.....++ ......
T Consensus 241 ~l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~~~~iLVD~~e~~q~~~ 320 (546)
T PRK14869 241 LINQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVRKKVILVDHNEKSQAVE 320 (546)
T ss_pred HhhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhccccCceEEEcCcccccccc
Confidence 3445788999999 8999999999999999999999999999999999999999999998753321 100000
Q ss_pred C--CCcccc-ccccchhhhhccCccccCCCCcceEe---cCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEE
Q 007694 484 G--DSIASD-VNTCLVSSICTRGISYRGRERGLLTC---YPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAI 557 (593)
Q Consensus 484 ~--~~~~~~-~~~~~V~dim~~~~~~~~~~~~~~~v---~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGi 557 (593)
+ +..... .+.-++++++..++ ..+ +...+...+.++|.+.+....|++.. ..+.||
T Consensus 321 ~~~~~~i~~iiDHH~~~~~~~~~p---------i~~~~~~~gst~tiv~~~~~~~~i~~~~~ia~---------~ll~gI 382 (546)
T PRK14869 321 GIEEAEILEIIDHHRLGDIQTSNP---------IFFRNEPVGSTSTIVARMYRENGIEPSPEIAG---------LLLAAI 382 (546)
T ss_pred chhhceEEEEecCCccCCCCCCCC---------cEEEeeeeeeHHHHHHHHHHHcCCCCCHHHHH---------HHHHHH
Confidence 0 000000 00112334444332 222 33567789999999999999898873 568898
Q ss_pred EehhhHHH
Q 007694 558 LHYDSIWN 565 (593)
Q Consensus 558 It~~di~~ 565 (593)
++-++.++
T Consensus 383 lsDT~~f~ 390 (546)
T PRK14869 383 LSDTLLFK 390 (546)
T ss_pred HHHhcCcc
Confidence 88877654
No 137
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.81 E-value=3.2e-05 Score=66.99 Aligned_cols=55 Identities=24% Similarity=0.311 Sum_probs=49.4
Q ss_pred cchhhhhccCccccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 494 CLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 494 ~~V~dim~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
.+++|+|.+++ .++++++++.++++.|.+.+.+.+||+|+ +++++|+|+.+|+.+
T Consensus 58 ~~v~dim~~~~---------~~v~~~~~l~~a~~~~~~~~~~~lpVvd~--------~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINRKP---------VTARPNDPLREALNLMHEHNIRTLPVVDD--------DGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCCCC---------CEECCcCcHHHHHHHHHHcCCCEEEEECC--------CCeEEEEEEHHHhhc
Confidence 57889988765 78999999999999999999999999997 789999999999864
No 138
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=97.78 E-value=4.4e-05 Score=73.15 Aligned_cols=59 Identities=27% Similarity=0.465 Sum_probs=53.7
Q ss_pred ccchhhhhccCccccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHHHHH
Q 007694 493 TCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLRE 569 (593)
Q Consensus 493 ~~~V~dim~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~~~~ 569 (593)
..+|.++|.+++ +++.+|++++++.+.|.+++++..||+|+ ++++|++|.+|+.+++.+
T Consensus 171 k~~V~~~~s~~~---------i~v~~d~tl~eaak~f~~~~i~GaPVvd~---------dk~vGiit~~dI~~aia~ 229 (294)
T COG2524 171 KEKVKNLMSKKL---------ITVRPDDTLREAAKLFYEKGIRGAPVVDD---------DKIVGIITLSDIAKAIAN 229 (294)
T ss_pred cchhhhhccCCc---------eEecCCccHHHHHHHHHHcCccCCceecC---------CceEEEEEHHHHHHHHHc
Confidence 457888888876 99999999999999999999999999995 599999999999998875
No 139
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.76 E-value=6.7e-05 Score=64.94 Aligned_cols=55 Identities=22% Similarity=0.302 Sum_probs=51.4
Q ss_pred hhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHH
Q 007694 418 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 472 (593)
Q Consensus 418 i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~ 472 (593)
.++.++|.+++.++++++++.++.+.|.+.++..+||+|++++++|+++.+|+..
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 6799999999999999999999999999989999999999899999999999853
No 140
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.72 E-value=5.8e-05 Score=64.82 Aligned_cols=55 Identities=20% Similarity=0.226 Sum_probs=51.0
Q ss_pred hhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHH
Q 007694 418 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 472 (593)
Q Consensus 418 i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~ 472 (593)
.++.++|..++.++.+++++.++++.|.+++...+||+|++++++|++|.+|+.+
T Consensus 56 ~~v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 56 LKVCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred cChhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 4588999999999999999999999999999999999998899999999999864
No 141
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.61 E-value=0.00012 Score=63.07 Aligned_cols=56 Identities=20% Similarity=0.196 Sum_probs=51.6
Q ss_pred hhhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHH
Q 007694 417 ELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 472 (593)
Q Consensus 417 ~i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~ 472 (593)
..++.++|.+++.++.+++++.++++.|.+++.+.+||+|++++++|+|+++|+.+
T Consensus 58 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 58 TAPVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred cCCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 45788999999999999999999999999999999999998899999999999864
No 142
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.52 E-value=0.00018 Score=60.52 Aligned_cols=48 Identities=21% Similarity=0.265 Sum_probs=42.6
Q ss_pred ceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHHH
Q 007694 513 LLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCL 567 (593)
Q Consensus 513 ~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~~ 567 (593)
+.++++++++.++.+.|.+.+.+.+||+|++ +++++|+||.+|+.+..
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~-------~~~~~Givt~~Dl~~~~ 50 (98)
T cd04618 3 LVVFDTKLPVKKAFNALVENGIRSAPLWDSR-------KQQFVGMLTITDFILIL 50 (98)
T ss_pred EEEECCCCcHHHHHHHHHHcCCceEEEEeCC-------CCEEEEEEEHHHHhhhe
Confidence 4789999999999999999999999999961 37999999999998754
No 143
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.49 E-value=0.00033 Score=49.30 Aligned_cols=46 Identities=39% Similarity=0.631 Sum_probs=41.5
Q ss_pred eEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHHH
Q 007694 514 LTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCL 567 (593)
Q Consensus 514 ~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~~ 567 (593)
.++.+++++.++.+.|.+.+.+.+||+++ +++++|+++.+|+.+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--------~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 3 VTVSPDTTLEEALELLREHGIRRLPVVDE--------EGRLVGIVTRRDIIKAL 48 (49)
T ss_pred eEecCCCcHHHHHHHHHHhCCCcccEECC--------CCeEEEEEEHHHHHHhh
Confidence 67789999999999999999999999997 68999999999987654
No 144
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.42 E-value=0.00033 Score=60.95 Aligned_cols=48 Identities=19% Similarity=0.383 Sum_probs=43.7
Q ss_pred ceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHHHH
Q 007694 513 LLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLR 568 (593)
Q Consensus 513 ~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~~~ 568 (593)
..++++++++.++.+.|.+++.+.+||+|+ +++++|++|.+|+.+...
T Consensus 3 ~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~--------~~~~~Giv~~~dl~~~~~ 50 (120)
T cd04641 3 IATARPDTPLIDVLDMLVERRVSALPIVDE--------NGKVVDVYSRFDVINLAK 50 (120)
T ss_pred cEEEcCCCCHHHHHHHHHHcCCCeeeEECC--------CCeEEEEEeHHHHHHHHh
Confidence 378899999999999999999999999987 789999999999997653
No 145
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.37 E-value=0.00044 Score=59.32 Aligned_cols=54 Identities=17% Similarity=0.266 Sum_probs=50.0
Q ss_pred hhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHH
Q 007694 418 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIK 471 (593)
Q Consensus 418 i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~ 471 (593)
.++.++|.+++..+++++++.++++.|.+++.+.+||+|++++++|+++.+|+.
T Consensus 58 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~ 111 (113)
T cd04607 58 DPVSEVMNRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLL 111 (113)
T ss_pred CCHHHhhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhc
Confidence 468899998899999999999999999999999999999889999999999975
No 146
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=97.37 E-value=0.00089 Score=70.43 Aligned_cols=123 Identities=18% Similarity=0.139 Sum_probs=93.4
Q ss_pred CceEecCCCCHHHHHHHHHhcCCcEEEEEe-CCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCcc
Q 007694 427 DFVKVALTVTLKEAIESMKDGQQNCVLVVN-GEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGIS 505 (593)
Q Consensus 427 ~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd-~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~ 505 (593)
++..+.+..++-++...+.+.+++.+||.| +.+.+..++|...+++.+........ .......++.|+-..
T Consensus 163 ~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~-----~~~~l~~s~~dl~ig--- 234 (381)
T KOG1764|consen 163 PFVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLP-----LPSLLSKSLSDLGIG--- 234 (381)
T ss_pred CceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccc-----cHHHhhCCHHHhCcc---
Confidence 337888999999999999999999999998 45789999999999998766543211 001112233332111
Q ss_pred ccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHHHH
Q 007694 506 YRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLR 568 (593)
Q Consensus 506 ~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~~~ 568 (593)
+......+.+++++.+|+++|.+.+++.+||||+ +++.+|++++.|+....+
T Consensus 235 ---~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~--------~g~~v~~~s~~Dv~~l~~ 286 (381)
T KOG1764|consen 235 ---TWSNIASISEDTPVIEALKIMSERRISALPVVDE--------NGKKVGNYSRFDVIHLAR 286 (381)
T ss_pred ---hhhhheeecCCCcHHHHHHHHHhcCcCcceEEcC--------CCceecceehhhhhhhhh
Confidence 1123578899999999999999999999999998 788899999999977654
No 147
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.35 E-value=0.00044 Score=59.48 Aligned_cols=56 Identities=18% Similarity=0.313 Sum_probs=50.0
Q ss_pred hhhhhhhhccCceEecCC--CCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHH
Q 007694 417 ELKVSRAMSKDFVKVALT--VTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 472 (593)
Q Consensus 417 ~i~v~~~M~~~~~~v~~~--~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~ 472 (593)
..++.++|.+++.++.++ +++.++++.|.+++...+||+|++++++|+++++|+.+
T Consensus 57 ~~~i~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 57 DLPIGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred ccCHHHhcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 356889999888888876 78999999999999999999998899999999999865
No 148
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.34 E-value=0.00033 Score=61.09 Aligned_cols=57 Identities=28% Similarity=0.333 Sum_probs=51.9
Q ss_pred hhhhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHH
Q 007694 416 EELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 472 (593)
Q Consensus 416 ~~i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~ 472 (593)
...++.++|.+++.++++++++.++++.|.+.+.+.+||+|++++++|+++++|+..
T Consensus 67 ~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~ 123 (124)
T cd04600 67 KPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123 (124)
T ss_pred ccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence 345788999999999999999999999999988999999998899999999999864
No 149
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.34 E-value=0.0005 Score=58.59 Aligned_cols=57 Identities=25% Similarity=0.271 Sum_probs=51.6
Q ss_pred hhhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHH
Q 007694 417 ELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRC 473 (593)
Q Consensus 417 ~i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~ 473 (593)
+.++.++|.+++..+.+++++.++.+.|.+.+...+||+|++++++|+++..|+.+.
T Consensus 52 ~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~ 108 (109)
T cd04606 52 DTPVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV 108 (109)
T ss_pred cchHHHHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence 456888998889999999999999999999888899999988999999999998764
No 150
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=97.33 E-value=0.0005 Score=61.44 Aligned_cols=49 Identities=22% Similarity=0.206 Sum_probs=44.5
Q ss_pred ceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHHHHH
Q 007694 513 LLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLRE 569 (593)
Q Consensus 513 ~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~~~~ 569 (593)
+.++.+++++.++++.|.+.+.+.+||+|+ +++++|+||.+|+++....
T Consensus 3 ~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~--------~g~l~Givt~~Dl~~~~~~ 51 (133)
T cd04592 3 YIKVSPTTTLKEALNLMLDEKQSCVLVVDS--------DDFLEGILTLGDIQRFLFT 51 (133)
T ss_pred ceEECCCCCHHHHHHHHHHcCCCEEEEECC--------CCeEEEEEEHHHHHHHHhh
Confidence 378899999999999999999999999997 7899999999999987753
No 151
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.33 E-value=0.00049 Score=58.90 Aligned_cols=58 Identities=22% Similarity=0.309 Sum_probs=51.9
Q ss_pred hhhhhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHH
Q 007694 415 LEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 472 (593)
Q Consensus 415 l~~i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~ 472 (593)
+...++.++|.+++.++.+++++.++++.|.+++...+||+|++++++|+++.+|+.+
T Consensus 55 ~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 55 LKDAKVREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred hcCCcHHHhccCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 3456788999999999999999999999999988889999998899999999999853
No 152
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.33 E-value=0.00054 Score=58.24 Aligned_cols=56 Identities=18% Similarity=0.253 Sum_probs=51.2
Q ss_pred hhhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHH
Q 007694 417 ELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 472 (593)
Q Consensus 417 ~i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~ 472 (593)
..++.++|..++.++++++++.++.+.|.+.+...+||+|++++++|+++.+|+.+
T Consensus 52 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 52 DTTIEKVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred cccHHHHhcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 45688999989999999999999999999999999999998899999999999864
No 153
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.32 E-value=0.00052 Score=59.92 Aligned_cols=53 Identities=19% Similarity=0.224 Sum_probs=47.9
Q ss_pred hhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHH
Q 007694 420 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 472 (593)
Q Consensus 420 v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~ 472 (593)
+.+.|..++.+++++.++.++++.|.+++.+.+||+|++++++|+|+.+|++.
T Consensus 70 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~~ 122 (123)
T cd04627 70 DLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVRL 122 (123)
T ss_pred hcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhhc
Confidence 34578888999999999999999999999999999998899999999999853
No 154
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.29 E-value=0.00045 Score=59.91 Aligned_cols=56 Identities=18% Similarity=0.213 Sum_probs=49.8
Q ss_pred hhhhhhhhcc--CceEecCCCCHHHHHHHHHhcCCcEEEEEeCC---CeEEEEEeHHHHHH
Q 007694 417 ELKVSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVNGE---DFLEGILTYGDIKR 472 (593)
Q Consensus 417 ~i~v~~~M~~--~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~---~~lvGiVt~~dL~~ 472 (593)
..++.++|++ ++.++++++++.++++.|.+++...+||+|++ ++++|+|+++|+.+
T Consensus 57 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 57 KVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred CCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 5568889985 78899999999999999999999999999987 69999999999753
No 155
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=97.29 E-value=0.00056 Score=59.18 Aligned_cols=57 Identities=32% Similarity=0.423 Sum_probs=51.9
Q ss_pred hhhhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHH
Q 007694 416 EELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 472 (593)
Q Consensus 416 ~~i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~ 472 (593)
...++.++|.+++..+++++++.++.+.|.+.+...+||+|++++++|+|+.+|+.+
T Consensus 65 ~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 65 SKIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred cccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 346788999999999999999999999999999999999998899999999999864
No 156
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.27 E-value=0.00064 Score=58.45 Aligned_cols=55 Identities=24% Similarity=0.282 Sum_probs=50.2
Q ss_pred hhhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHH
Q 007694 417 ELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 472 (593)
Q Consensus 417 ~i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~ 472 (593)
..++.++|.+++.++++++++.++++.|.+.+...+||+|+ ++++|+|+++|+.+
T Consensus 59 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 59 RVNVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL 113 (114)
T ss_pred ccCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence 45788999999999999999999999999999999999987 99999999999864
No 157
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.26 E-value=0.00071 Score=57.20 Aligned_cols=55 Identities=29% Similarity=0.314 Sum_probs=50.2
Q ss_pred hhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHH
Q 007694 418 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 472 (593)
Q Consensus 418 i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~ 472 (593)
.+++++|.+++..+.+++++.++++.|.+++...+||+|++++++|+++.+|+.+
T Consensus 52 ~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 52 ETVEEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred ccHHHhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 4688999988899999999999999999988889999998899999999999864
No 158
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.24 E-value=0.00094 Score=73.06 Aligned_cols=57 Identities=30% Similarity=0.415 Sum_probs=52.8
Q ss_pred hhhhhhhc-cCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHH
Q 007694 418 LKVSRAMS-KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 474 (593)
Q Consensus 418 i~v~~~M~-~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l 474 (593)
.++.++|+ +++.++++++++.++.+.|.+++.+.+||+|++++++|+|+.+|+.+.+
T Consensus 147 ~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~ 204 (486)
T PRK05567 147 QPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAE 204 (486)
T ss_pred CcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhh
Confidence 46889998 7889999999999999999999999999999999999999999998875
No 159
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.24 E-value=0.0019 Score=70.07 Aligned_cols=58 Identities=24% Similarity=0.306 Sum_probs=53.9
Q ss_pred hhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHh
Q 007694 418 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLS 475 (593)
Q Consensus 418 i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~ 475 (593)
.++.++|++++.++++++++.++++.|.+++.+.+||+|++++++|+|+++|+.+...
T Consensus 148 ~~V~diMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~ 205 (479)
T PRK07807 148 TQVRDVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATI 205 (479)
T ss_pred CCHHHhccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence 4588999999999999999999999999999999999998899999999999988743
No 160
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.23 E-value=0.00059 Score=57.01 Aligned_cols=46 Identities=24% Similarity=0.426 Sum_probs=41.8
Q ss_pred ceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHH
Q 007694 513 LLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNC 566 (593)
Q Consensus 513 ~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~ 566 (593)
+.++.+++++.++++.|.+.+.+.+||+|+ +++++|+++.+|+.+.
T Consensus 3 ~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~--------~~~~~Giv~~~dl~~~ 48 (96)
T cd04614 3 VPTVWEETPLPVAVRIMELANVKALPVLDD--------DGKLSGIITERDLIAK 48 (96)
T ss_pred ccEeCCCCcHHHHHHHHHHcCCCeEEEECC--------CCCEEEEEEHHHHhcC
Confidence 478899999999999999999999999997 7899999999998763
No 161
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.23 E-value=0.00088 Score=57.21 Aligned_cols=55 Identities=15% Similarity=0.276 Sum_probs=49.8
Q ss_pred hhhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHH
Q 007694 417 ELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 472 (593)
Q Consensus 417 ~i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~ 472 (593)
..++.++|..++.++.+++++.++++.|.+++...+||+| +++++|+++++|+..
T Consensus 57 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 57 DTTVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK 111 (112)
T ss_pred cCCHHHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence 4578999999889999999999999999998889999998 589999999999864
No 162
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.23 E-value=0.00073 Score=57.59 Aligned_cols=55 Identities=29% Similarity=0.452 Sum_probs=50.2
Q ss_pred hhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHH
Q 007694 418 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 472 (593)
Q Consensus 418 i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~ 472 (593)
.++.++|..++..+++++++.++.+.|.+++...+||+|++++++|+++.+|+.+
T Consensus 56 ~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 56 APVRGVMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred CcHHHHhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 3688899999999999999999999999988999999998799999999999864
No 163
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=97.21 E-value=0.00085 Score=57.37 Aligned_cols=55 Identities=24% Similarity=0.327 Sum_probs=50.5
Q ss_pred hhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHH
Q 007694 418 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 472 (593)
Q Consensus 418 i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~ 472 (593)
.++.++|.++...+++++++.++++.+.+.+...+||+|++++++|+++..|+.+
T Consensus 59 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 59 LPVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred CCHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 4689999999999999999999999999988899999998899999999999864
No 164
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=97.18 E-value=0.0031 Score=68.30 Aligned_cols=58 Identities=22% Similarity=0.323 Sum_probs=54.0
Q ss_pred hhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHh
Q 007694 418 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLS 475 (593)
Q Consensus 418 i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~ 475 (593)
.+++++|++++.++++++++.++++.|.+++.+.+||+|++++++|+|+++|+.+...
T Consensus 146 ~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~ 203 (475)
T TIGR01303 146 TQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATI 203 (475)
T ss_pred CCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHh
Confidence 4689999999999999999999999999999999999998999999999999988644
No 165
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=97.18 E-value=0.00088 Score=57.60 Aligned_cols=55 Identities=27% Similarity=0.375 Sum_probs=49.3
Q ss_pred hhhhhhhccCceEecC--CCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHH
Q 007694 418 LKVSRAMSKDFVKVAL--TVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 472 (593)
Q Consensus 418 i~v~~~M~~~~~~v~~--~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~ 472 (593)
.+++++|..+...+.. ++++.++++.|.+++...+||+|++++++|+|+++|+.+
T Consensus 57 ~~v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 57 TPLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred CCHHHhcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 4588999988888866 999999999999999999999998899999999999853
No 166
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=97.17 E-value=0.00093 Score=56.62 Aligned_cols=55 Identities=18% Similarity=0.261 Sum_probs=50.3
Q ss_pred hhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHH
Q 007694 418 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 472 (593)
Q Consensus 418 i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~ 472 (593)
.++.++|.+++..+++++++.++.+.+.+.+.+.+||+|++++++|+++++|+.+
T Consensus 54 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 54 KSLEDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred CcHhHhhcCCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 4688899999999999999999999999988899999998899999999999853
No 167
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.16 E-value=0.00077 Score=58.55 Aligned_cols=57 Identities=32% Similarity=0.503 Sum_probs=51.6
Q ss_pred hhhhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHH
Q 007694 416 EELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 472 (593)
Q Consensus 416 ~~i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~ 472 (593)
...++.++|.+++..+++++++.++++.|.+.+...+||+|++++++|+++.+|+..
T Consensus 65 ~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 65 RDVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred cCcCHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence 456788999999999999999999999999988889999998889999999999864
No 168
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.15 E-value=0.00095 Score=57.95 Aligned_cols=57 Identities=26% Similarity=0.300 Sum_probs=51.6
Q ss_pred hhhhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHH
Q 007694 416 EELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 472 (593)
Q Consensus 416 ~~i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~ 472 (593)
...++.++|.+++..+++++++.++.+.|.+.+.+.+||+|++++++|+++++|+.+
T Consensus 65 ~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 65 ASPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred ccCcHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence 456788899999999999999999999999999999999998899999999999864
No 169
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=97.15 E-value=0.00064 Score=70.44 Aligned_cols=59 Identities=14% Similarity=0.125 Sum_probs=52.7
Q ss_pred ccchhhhhccC--ccccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHHHH
Q 007694 493 TCLVSSICTRG--ISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLR 568 (593)
Q Consensus 493 ~~~V~dim~~~--~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~~~ 568 (593)
..+|+++|+++ + +++++++++.++.+.|.+.+...+||+|+ +|+++|+||.+|+.+.+.
T Consensus 196 ~~~V~~im~~~~~~---------~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~--------~g~~iG~vt~~dl~~~~~ 256 (321)
T PRK11543 196 LNKVHHLMRRDDAI---------PQVALTASVMDAMLELSRTGLGLVAVCDA--------QQQVQGVFTDGDLRRWLV 256 (321)
T ss_pred HhHHHHHhccCCCC---------cEeCCCCCHHHHHHHHHHcCCCEEEEEcC--------CCcEEEEecHHHHHHHHh
Confidence 46899999986 5 89999999999999999999999999997 799999999999887553
No 170
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=97.15 E-value=0.00074 Score=70.13 Aligned_cols=59 Identities=15% Similarity=0.082 Sum_probs=51.0
Q ss_pred ccchhhhhcc--CccccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHHHH
Q 007694 493 TCLVSSICTR--GISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLR 568 (593)
Q Consensus 493 ~~~V~dim~~--~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~~~ 568 (593)
..+|+|+|.+ ++ +++++++++.++.+.|.+.+.+.+||+|+ +|+++|+||.+|+.+...
T Consensus 201 ~~~V~dim~~~~~~---------~~v~~~~sl~~a~~~~~~~~~~~~vVvd~--------~g~lvGivt~~Dl~~~~~ 261 (326)
T PRK10892 201 LLRVSDIMHTGDEI---------PHVSKTASLRDALLEITRKNLGMTVICDD--------NMKIEGIFTDGDLRRVFD 261 (326)
T ss_pred cCcHHHHhCCCCCC---------eEECCCCCHHHHHHHHHhcCCCeEEEEcC--------CCcEEEEEecHHHHHHHh
Confidence 4579999986 55 89999999999999999999888888886 799999999999987554
No 171
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=97.15 E-value=0.00097 Score=56.71 Aligned_cols=57 Identities=23% Similarity=0.326 Sum_probs=51.1
Q ss_pred hhhhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHH
Q 007694 416 EELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 472 (593)
Q Consensus 416 ~~i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~ 472 (593)
...++.++|.+++..+++++++.++++.|.+.+...+||+|+++++.|+++.+|+.+
T Consensus 54 ~~~~v~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 54 LQTPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred CCcCHHHhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 346788999999999999999999999999888888999998899999999999864
No 172
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=97.15 E-value=0.0012 Score=58.12 Aligned_cols=50 Identities=26% Similarity=0.474 Sum_probs=44.6
Q ss_pred ceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHHHHHH
Q 007694 513 LLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLREE 570 (593)
Q Consensus 513 ~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~~~~~ 570 (593)
+.++++++++.++.+.|.+.+.+.+||+|+ +++++|+++.+|+++.+.+.
T Consensus 4 ~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~--------~~~~~Gii~~~dl~~~~~~~ 53 (124)
T cd04608 4 PVTVLPTVTCAEAIEILKEKGFDQLPVVDE--------SGKILGMVTLGNLLSSLSSG 53 (124)
T ss_pred CEEECCCCCHHHHHHHHHHcCCCEEEEEcC--------CCCEEEEEEHHHHHHHHHHh
Confidence 478899999999999999999999999997 78999999999998766543
No 173
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.14 E-value=0.00094 Score=58.28 Aligned_cols=56 Identities=23% Similarity=0.342 Sum_probs=50.8
Q ss_pred hhhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHH
Q 007694 417 ELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 472 (593)
Q Consensus 417 ~i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~ 472 (593)
..++.++|.+++..+++++++.++.+.|.+.+.+.+||+|++++++|+|+.+|+.+
T Consensus 69 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 69 NEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK 124 (125)
T ss_pred hcCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence 45688899999999999999999999999998899999998789999999999864
No 174
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=97.14 E-value=0.0007 Score=57.86 Aligned_cols=55 Identities=22% Similarity=0.262 Sum_probs=50.3
Q ss_pred hhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHH
Q 007694 418 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 472 (593)
Q Consensus 418 i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~ 472 (593)
.++.++|.+++.++++++++.++++.+.+++.+.+||+|++++++|+++.+|+..
T Consensus 58 ~~v~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 58 TLVERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred CCHHHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 5688999988999999999999999999988889999998899999999999864
No 175
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=97.14 E-value=0.00097 Score=57.35 Aligned_cols=55 Identities=18% Similarity=0.194 Sum_probs=49.9
Q ss_pred hhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCC--CeEEEEEeHHHHHH
Q 007694 418 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGE--DFLEGILTYGDIKR 472 (593)
Q Consensus 418 i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~--~~lvGiVt~~dL~~ 472 (593)
.++.++|.+++..+.+++++.++++.|.+++...+||+|++ ++++|+|+.+|+.+
T Consensus 58 ~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 58 SAVDEVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred ccHHHhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 34788899999999999999999999999999999999987 79999999999864
No 176
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=97.14 E-value=0.0012 Score=55.80 Aligned_cols=54 Identities=15% Similarity=0.075 Sum_probs=49.3
Q ss_pred hhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHH
Q 007694 419 KVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 472 (593)
Q Consensus 419 ~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~ 472 (593)
++.++|.+.+..+.+++++.++++.|.+.+...+||+|++++++|+++++++.+
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 52 CCGDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred chhhhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 478889888888999999999999999999999999998899999999999864
No 177
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.13 E-value=0.001 Score=56.76 Aligned_cols=55 Identities=29% Similarity=0.465 Sum_probs=49.9
Q ss_pred hhhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHH
Q 007694 417 ELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 472 (593)
Q Consensus 417 ~i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~ 472 (593)
..++.++|.+++..+++++++.++++.+.+.+...+||+|+ ++++|+++.+|+.+
T Consensus 58 ~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 58 DTPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK 112 (113)
T ss_pred ccCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence 45788999889999999999999999999988889999987 89999999999864
No 178
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=97.13 E-value=0.0011 Score=66.40 Aligned_cols=66 Identities=18% Similarity=0.239 Sum_probs=59.8
Q ss_pred HhhhhhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccC
Q 007694 414 LLEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSS 479 (593)
Q Consensus 414 ~l~~i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~ 479 (593)
...+.++..+|++++.++.+.+++..+.+.|.-.+.+-+||+|++.+++|+|+++|+++.++....
T Consensus 245 ~~~~t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~~q~ 310 (432)
T COG4109 245 KKPSTTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQMIQR 310 (432)
T ss_pred CCCCccHHHHhccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHHhcc
Confidence 346678899999999999999999999999999999999999999999999999999998875443
No 179
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.12 E-value=0.0015 Score=57.86 Aligned_cols=57 Identities=30% Similarity=0.379 Sum_probs=51.0
Q ss_pred hhhhhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHH
Q 007694 415 LEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 472 (593)
Q Consensus 415 l~~i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~ 472 (593)
+...++.++|.+++..+.+++++.++.+.|.+.+.+.+||+|+ ++++|+++.+|+.+
T Consensus 75 ~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~ 131 (132)
T cd04636 75 LLGKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR 131 (132)
T ss_pred HcCCCHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence 3445788999999999999999999999999988899999997 99999999999864
No 180
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.11 E-value=0.00097 Score=56.98 Aligned_cols=54 Identities=30% Similarity=0.434 Sum_probs=49.7
Q ss_pred hhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHH
Q 007694 419 KVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 472 (593)
Q Consensus 419 ~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~ 472 (593)
++.++|.+++.++.+++++.++.+.|.+.+...+||+|++++++|+++++|+.+
T Consensus 59 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 59 TVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred CHHHhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 488999999999999999999999999988899999998899999999999864
No 181
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.11 E-value=0.0012 Score=56.08 Aligned_cols=56 Identities=34% Similarity=0.337 Sum_probs=50.7
Q ss_pred hhhhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHH
Q 007694 416 EELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 472 (593)
Q Consensus 416 ~~i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~ 472 (593)
...++.++|.+++..+++++++.++++.|.+.+.+.+||+| +++++|+++.+|+.+
T Consensus 54 ~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 54 GHAPVKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred ccCcHHHHhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 45678899999999999999999999999999899999999 789999999999853
No 182
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.11 E-value=0.0011 Score=57.50 Aligned_cols=57 Identities=25% Similarity=0.356 Sum_probs=51.4
Q ss_pred hhhhhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHH
Q 007694 415 LEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 472 (593)
Q Consensus 415 l~~i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~ 472 (593)
+...++.++|..+...+++++++.++.+.|.+.+.+.+||+|+ ++++|+++.+|+.+
T Consensus 64 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~ 120 (121)
T cd04633 64 IRNLPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR 120 (121)
T ss_pred hhccCHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence 3456788999999999999999999999999999999999997 89999999999864
No 183
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.10 E-value=0.0011 Score=56.83 Aligned_cols=48 Identities=17% Similarity=0.266 Sum_probs=43.7
Q ss_pred ceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHHHH
Q 007694 513 LLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLR 568 (593)
Q Consensus 513 ~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~~~ 568 (593)
++++++++++.++.+.|.+.+.+.+||+|+ +++++|+++.+|+.+.+.
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--------~~~~~Giv~~~dl~~~~~ 50 (116)
T cd04643 3 VAYVQDTNTLRHALLVLTKHGYSAIPVLDK--------EGKYVGTISLTDILWKLK 50 (116)
T ss_pred cEEECCCCcHHHHHHHHHHCCCceeeeECC--------CCcEEEEEeHHHHHHHhh
Confidence 478899999999999999999999999997 789999999999988764
No 184
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=97.10 E-value=0.0013 Score=55.99 Aligned_cols=55 Identities=31% Similarity=0.378 Sum_probs=49.9
Q ss_pred hhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHH
Q 007694 418 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 472 (593)
Q Consensus 418 i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~ 472 (593)
.++.++|.+++..+++++++.++++.|.+.+...+||+|++++++|+++.+|+.+
T Consensus 55 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 55 AKVKDVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred cCHHHHhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 4678889889999999999999999999888899999998899999999999853
No 185
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.10 E-value=0.0013 Score=58.82 Aligned_cols=55 Identities=24% Similarity=0.335 Sum_probs=50.2
Q ss_pred hhhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHH
Q 007694 417 ELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 472 (593)
Q Consensus 417 ~i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~ 472 (593)
..++.++|.+++..+.+++++.++.+.|.+.+.+.+||+++ ++++|+|+.+|+.+
T Consensus 80 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 80 PLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred cccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 45789999999999999999999999999999999999987 89999999999864
No 186
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.08 E-value=0.0016 Score=45.67 Aligned_cols=47 Identities=36% Similarity=0.441 Sum_probs=41.9
Q ss_pred ceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHH
Q 007694 428 FVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 474 (593)
Q Consensus 428 ~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l 474 (593)
+.++.+++++.++.+.+.+.+...+||++++++++|+++.+++.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence 46788999999999999988899999999888999999999987653
No 187
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=97.08 E-value=0.0012 Score=56.36 Aligned_cols=55 Identities=27% Similarity=0.310 Sum_probs=50.9
Q ss_pred hhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeC-CCeEEEEEeHHHHHH
Q 007694 418 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNG-EDFLEGILTYGDIKR 472 (593)
Q Consensus 418 i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~-~~~lvGiVt~~dL~~ 472 (593)
.++.++|.+++.++++++++.++.+.|.+.+...+||+|+ +++++|+++.+|+..
T Consensus 58 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 58 VVASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred EEHHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 6788999999999999999999999999999999999997 789999999999864
No 188
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.07 E-value=0.0014 Score=56.87 Aligned_cols=56 Identities=23% Similarity=0.426 Sum_probs=51.1
Q ss_pred hhhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHH
Q 007694 417 ELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 472 (593)
Q Consensus 417 ~i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~ 472 (593)
..++.++|.+++..+.+++++.++++.|.+.+...+||+|++++++|+++++|+.+
T Consensus 66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~ 121 (122)
T cd04637 66 NRRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK 121 (122)
T ss_pred HhHHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence 34688999999999999999999999999988899999998899999999999864
No 189
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.06 E-value=0.0015 Score=54.87 Aligned_cols=53 Identities=28% Similarity=0.358 Sum_probs=48.8
Q ss_pred hhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHH
Q 007694 418 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIK 471 (593)
Q Consensus 418 i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~ 471 (593)
.++.++|.+++..+++++++.++++.|.+++...+||+|+ ++++|+++.+|+.
T Consensus 51 ~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~ 103 (105)
T cd04599 51 RLVADAMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIA 103 (105)
T ss_pred CCHHHHccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence 3578899999999999999999999999999999999997 9999999999975
No 190
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=97.05 E-value=0.0013 Score=55.76 Aligned_cols=56 Identities=27% Similarity=0.421 Sum_probs=48.9
Q ss_pred hhhhhhhhccCceEecC-CCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHH
Q 007694 417 ELKVSRAMSKDFVKVAL-TVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 472 (593)
Q Consensus 417 ~i~v~~~M~~~~~~v~~-~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~ 472 (593)
..++.++|.+++..+.+ ++++.++++.|.+.+.+.+||+|++++++|+|+.+|+.+
T Consensus 53 ~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 53 DKPVSEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred CCCHHHhcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 35688899877777777 999999999999999999999998899999999999863
No 191
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.04 E-value=0.0017 Score=55.13 Aligned_cols=54 Identities=22% Similarity=0.348 Sum_probs=49.4
Q ss_pred hhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHH
Q 007694 419 KVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 472 (593)
Q Consensus 419 ~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~ 472 (593)
++.++|.+++..+++++++.++++.|.+.+...+||+++++++.|+++++|+.+
T Consensus 56 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 56 SVEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred CHHHhcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 488889889999999999999999999988899999998899999999999853
No 192
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.03 E-value=0.0015 Score=55.65 Aligned_cols=53 Identities=30% Similarity=0.337 Sum_probs=48.9
Q ss_pred hhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHH
Q 007694 418 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIK 471 (593)
Q Consensus 418 i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~ 471 (593)
.++.++|.+++..+.+++++.++++.|.+++...+||+|+ ++++|+|++.|+.
T Consensus 57 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~ 109 (111)
T cd04626 57 KKVFNIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDIL 109 (111)
T ss_pred CcHHHHhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhc
Confidence 4688899999999999999999999999999999999997 8999999999975
No 193
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.03 E-value=0.001 Score=58.38 Aligned_cols=57 Identities=26% Similarity=0.388 Sum_probs=47.7
Q ss_pred hhhhhhhhhccCceEe------cCCCCHHHHHHHHHhcCCcEEEEEeCC-CeEEEEEeHHHHHH
Q 007694 416 EELKVSRAMSKDFVKV------ALTVTLKEAIESMKDGQQNCVLVVNGE-DFLEGILTYGDIKR 472 (593)
Q Consensus 416 ~~i~v~~~M~~~~~~v------~~~~~v~~~~~~l~~~~~~~~pVvd~~-~~lvGiVt~~dL~~ 472 (593)
...+++++|+++...+ .+++++.++++.|.+++.+.+||+|++ ++++|+|+++|+.+
T Consensus 62 ~~~~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 62 SELTVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred hheEHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 3466889998765443 368899999999999999999999986 79999999999864
No 194
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.03 E-value=0.0015 Score=55.71 Aligned_cols=55 Identities=29% Similarity=0.349 Sum_probs=49.4
Q ss_pred hhhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHH
Q 007694 417 ELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 472 (593)
Q Consensus 417 ~i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~ 472 (593)
..++.++|.+++..+++++++.++++.|.+.+.+.+||+|++ +++|+|+++|+.+
T Consensus 57 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 57 EVPVGEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM 111 (112)
T ss_pred cCCHHHhcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence 457889999899999999999999999999998899999875 9999999999853
No 195
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.03 E-value=0.0013 Score=57.62 Aligned_cols=48 Identities=21% Similarity=0.311 Sum_probs=43.7
Q ss_pred ceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHHHH
Q 007694 513 LLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLR 568 (593)
Q Consensus 513 ~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~~~ 568 (593)
+.++++++++.++++.|.+.+.+.+||+|+ +++++|+++.+|+.+...
T Consensus 3 ~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~--------~~~~~Giv~~~dl~~~~~ 50 (126)
T cd04642 3 VVSIDSDERVLDAFKLMRKNNISGLPVVDE--------KGKLIGNISASDLKGLLL 50 (126)
T ss_pred eEEECCCccHHHHHHHHHHhCCCcccEECC--------CCcEEEEEEHHHhhhhhc
Confidence 478899999999999999999999999997 789999999999988664
No 196
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.02 E-value=0.0012 Score=56.51 Aligned_cols=55 Identities=18% Similarity=0.221 Sum_probs=49.8
Q ss_pred hhhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHH
Q 007694 417 ELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 472 (593)
Q Consensus 417 ~i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~ 472 (593)
..++.++|.+++..+.+++++.++.+.|.+.+...+||+|+ ++++|+++.+|+.+
T Consensus 59 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 59 VATVRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR 113 (114)
T ss_pred CccHHHHhccCceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence 45688999988999999999999999999988888999997 89999999999864
No 197
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.01 E-value=0.0017 Score=57.08 Aligned_cols=48 Identities=21% Similarity=0.421 Sum_probs=43.3
Q ss_pred ceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHHHH
Q 007694 513 LLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLR 568 (593)
Q Consensus 513 ~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~~~ 568 (593)
+.++++++++.++.++|.+.+.+.+||+|+ +++++|++|.+|+.+.+.
T Consensus 3 ~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~--------~~~~~G~it~~dl~~~~~ 50 (128)
T cd04632 3 VITVREDDSVGKAINVLREHGISRLPVVDD--------NGKLTGIVTRHDIVDFVV 50 (128)
T ss_pred ceEeCCCCCHHHHHHHHHHcCCCEEEEECC--------CCcEEEEEEHHHHHHHHh
Confidence 367889999999999999999999999997 789999999999987653
No 198
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=97.01 E-value=0.0018 Score=54.99 Aligned_cols=55 Identities=27% Similarity=0.392 Sum_probs=50.1
Q ss_pred hhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHH
Q 007694 418 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 472 (593)
Q Consensus 418 i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~ 472 (593)
.++.+.|.+++..+.+++++.++.+.|.+.+.+.+||+|++++++|+++..|+.+
T Consensus 56 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 56 VLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred cCHHHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 3678889999999999999999999999988899999998899999999999864
No 199
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.01 E-value=0.001 Score=59.10 Aligned_cols=56 Identities=30% Similarity=0.356 Sum_probs=51.0
Q ss_pred hhhhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHH
Q 007694 416 EELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 472 (593)
Q Consensus 416 ~~i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~ 472 (593)
...++.++|.+++..+.+++++.++++.|.+.+.+.+||+| +++++|+++++|+.+
T Consensus 79 ~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~ 134 (135)
T cd04586 79 HGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR 134 (135)
T ss_pred cCCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence 34678899999999999999999999999999999999999 899999999999864
No 200
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=96.99 E-value=0.0018 Score=55.06 Aligned_cols=55 Identities=24% Similarity=0.283 Sum_probs=50.1
Q ss_pred hhhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHH
Q 007694 417 ELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 472 (593)
Q Consensus 417 ~i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~ 472 (593)
..++.++|.+++..+++++++.++.+.|.+.+.+.+||+|+ ++++|+++.+|+.+
T Consensus 56 ~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 56 DTPVSEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred cCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 35688999999999999999999999999999999999987 89999999999864
No 201
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=96.97 E-value=0.002 Score=54.88 Aligned_cols=55 Identities=20% Similarity=0.176 Sum_probs=49.5
Q ss_pred hhhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHH
Q 007694 417 ELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 472 (593)
Q Consensus 417 ~i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~ 472 (593)
..++.++|.+++..+++++++.++++.|.+++...+||+|+ ++++|+++.+|+.+
T Consensus 56 ~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~ 110 (111)
T cd04589 56 STPVGEIATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS 110 (111)
T ss_pred CCCHHHHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence 34688899999999999999999999999999999999985 89999999999864
No 202
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.94 E-value=0.0015 Score=71.13 Aligned_cols=58 Identities=24% Similarity=0.201 Sum_probs=53.3
Q ss_pred hhhhhhhhhcc--CceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHH
Q 007694 416 EELKVSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRC 473 (593)
Q Consensus 416 ~~i~v~~~M~~--~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~ 473 (593)
.+.+++++|++ ++.++++++++.++.+.|.+++.+.+||+|++++++|+|+++|+.+.
T Consensus 159 ~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~ 218 (502)
T PRK07107 159 LDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSH 218 (502)
T ss_pred CCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhc
Confidence 34679999997 78889999999999999999999999999998999999999999875
No 203
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.93 E-value=0.0012 Score=56.57 Aligned_cols=56 Identities=21% Similarity=0.322 Sum_probs=48.7
Q ss_pred hhhhhhhhcc--CceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHH
Q 007694 417 ELKVSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 472 (593)
Q Consensus 417 ~i~v~~~M~~--~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~ 472 (593)
..++.++|.+ ++.++.+++++.++++.|.+.+.+.+||+|++++++|+++.+|+.+
T Consensus 56 ~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 56 QTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred ccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 3568888975 3668999999999999999999999999998889999999998753
No 204
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.93 E-value=0.0021 Score=54.76 Aligned_cols=55 Identities=29% Similarity=0.381 Sum_probs=49.6
Q ss_pred hhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHH
Q 007694 418 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 472 (593)
Q Consensus 418 i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~ 472 (593)
.++.++|.+++..+.+++++.++.+.|.+.+...+||+|+++++.|+++.+|+.+
T Consensus 57 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 57 TPVSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred cCHHHhccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 4688899999999999999999999999888889999998899999999999853
No 205
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=96.92 E-value=0.0023 Score=53.97 Aligned_cols=53 Identities=28% Similarity=0.319 Sum_probs=48.0
Q ss_pred hhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHH
Q 007694 419 KVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 472 (593)
Q Consensus 419 ~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~ 472 (593)
++.+.|.++..++++++++.++++.|.+++...+||+| +++++|+++.+|+..
T Consensus 51 ~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 51 DVVDYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD 103 (104)
T ss_pred chhhhhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence 47788988899999999999999999999999999998 689999999999854
No 206
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=96.91 E-value=0.0024 Score=55.29 Aligned_cols=57 Identities=33% Similarity=0.439 Sum_probs=51.0
Q ss_pred hhhhhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHH
Q 007694 415 LEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 472 (593)
Q Consensus 415 l~~i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~ 472 (593)
....++.++|.+++..+.+++++.++++.|.+.+...+||+|+ ++++|+++.+|+.+
T Consensus 64 ~~~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 64 LLKMPVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR 120 (121)
T ss_pred hcCcCHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence 3456788999999999999999999999999999999999987 89999999999864
No 207
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=96.87 E-value=0.0028 Score=66.83 Aligned_cols=111 Identities=14% Similarity=0.088 Sum_probs=74.3
Q ss_pred HhhhhhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccc
Q 007694 414 LLEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNT 493 (593)
Q Consensus 414 ~l~~i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~ 493 (593)
+..-+++.++|.+.......+-+ .+++ +.+...++|+|+ |+++.++..........
T Consensus 270 ~~~~l~a~~~m~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-------------- 325 (382)
T TIGR03415 270 PLNVLTARSLMRPLTDLEHVDGG--WCVS---DRRDTWLFTIDK-----QVRRRDAKLPVQAWAAE-------------- 325 (382)
T ss_pred cccceeHHHHhcccccccccCcc--hhhh---hcccceeEeecc-----ceecccchHhHhhcccc--------------
Confidence 35557888999543333333322 2332 367788899985 78888776544221111
Q ss_pred cchhhhhccCccccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHHHH
Q 007694 494 CLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLR 568 (593)
Q Consensus 494 ~~V~dim~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~~~ 568 (593)
.++.+ +..+ ..++++|+++.+++....+.+.. ++|+| +|+++|+|++.++++++.
T Consensus 326 ~~~~~-~~~~---------~~~~~~~~~~~~~~~~~~~~~~~-~~v~~---------~~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 326 QEVES-LEAA---------PTVINPDTLMRDVLAARHRTGGA-ILLVE---------NGRIVGVIGDDNIYHALL 380 (382)
T ss_pred cchhh-hccc---------CcccCCCCcHHHHHHHHhcCCCC-eEEee---------CCeEEEEEeHHHHHHHHh
Confidence 12333 2332 26889999999999999888764 78888 589999999999998874
No 208
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=96.86 E-value=0.0024 Score=69.79 Aligned_cols=61 Identities=30% Similarity=0.394 Sum_probs=55.7
Q ss_pred hhhhhhhhhccC--ceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhh
Q 007694 416 EELKVSRAMSKD--FVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 476 (593)
Q Consensus 416 ~~i~v~~~M~~~--~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~ 476 (593)
.+.++.++|+++ +.++++++++.++++.|.+++.+.+||+|++++++|+|+++|+.+.+..
T Consensus 161 ~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 161 RETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY 223 (505)
T ss_pred cCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence 356799999977 7899999999999999999999999999999999999999999988654
No 209
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=96.85 E-value=0.0026 Score=54.08 Aligned_cols=48 Identities=21% Similarity=0.409 Sum_probs=43.5
Q ss_pred ceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccC-CeEEEEEehhhHHHHHH
Q 007694 513 LLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRK-QRIVAILHYDSIWNCLR 568 (593)
Q Consensus 513 ~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~-~~lvGiIt~~di~~~~~ 568 (593)
+.++++++++.++.+.|.+.+.+.+||+|+ + ++++|+++.+|+.+...
T Consensus 3 ~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~--------~~~~~~G~v~~~~l~~~~~ 51 (111)
T cd04590 3 IVALDADDTLEEILELIAESGHSRFPVYDG--------DLDNIIGVVHVKDLLRALA 51 (111)
T ss_pred eEEEcCCCCHHHHHHHHhhCCCceEEEECC--------CCceEEEEEEHHHHHHHHH
Confidence 378899999999999999999999999997 6 89999999999988764
No 210
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=96.84 E-value=0.0017 Score=65.30 Aligned_cols=57 Identities=16% Similarity=0.165 Sum_probs=51.0
Q ss_pred cchhhhhccC-ccccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHHH
Q 007694 494 CLVSSICTRG-ISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCL 567 (593)
Q Consensus 494 ~~V~dim~~~-~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~~ 567 (593)
.+++|+|.++ + .++.+++++.++.+.|.+.+.+.+||+|+ +++++|+++.+|+.+..
T Consensus 155 ~~v~~im~~~~~---------~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~--------~g~~~Givt~~dl~~~~ 212 (268)
T TIGR00393 155 VKVKDLMQTTDL---------PLIAPTTSFKDALLEMSEKRLGSAIVCDE--------NNQLVGVFTDGDLRRAL 212 (268)
T ss_pred hhHHHHhCCCCC---------CcCCCCCcHHHHHHHHhhcCCcEEEEEeC--------CCCEEEEEEcHHHHHHH
Confidence 5788999876 5 78899999999999999999999999997 78999999999998764
No 211
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=96.82 E-value=0.0014 Score=69.95 Aligned_cols=63 Identities=13% Similarity=0.203 Sum_probs=53.6
Q ss_pred cccchhhhhccCccccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHHHH
Q 007694 492 NTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLR 568 (593)
Q Consensus 492 ~~~~V~dim~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~~~ 568 (593)
.+.+++|+|++.. ++.+++.+++++++.+.+.+++.+++||.+++ .++++|+|+.+|++....
T Consensus 189 ~~~~v~diMtpr~-------~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~-------~d~ivGiv~~kDll~~~~ 251 (408)
T TIGR03520 189 GNTDTKQVMRPRL-------DIFALDIETSFSEIIPKIIENGYSRIPVYKET-------IDNITGVLYIKDLLPHLN 251 (408)
T ss_pred CCCEeeeeCCchH-------hEEEEECCCCHHHHHHHHHhCCCCEEEEEcCC-------CCceEEEEEHHHHHhHhc
Confidence 3568999999732 35899999999999999999999999999863 368999999999987544
No 212
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=96.80 E-value=0.0022 Score=69.78 Aligned_cols=60 Identities=18% Similarity=0.321 Sum_probs=53.0
Q ss_pred cccchhhhhccCccccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHHHH
Q 007694 492 NTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLR 568 (593)
Q Consensus 492 ~~~~V~dim~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~~~ 568 (593)
...+++++|.+++ .++.+++++.++.+.|.+.+.+.+||+|+ +++++|+||.+|+.+.+.
T Consensus 333 ~~~~v~~im~~~~---------~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~--------~~~~~Givt~~dl~~~~~ 392 (454)
T TIGR01137 333 KNATVKDLHLPAP---------VTVHPTETVGDAIEILREYGFDQLPVVTE--------AGKVLGSVTLRELLSALF 392 (454)
T ss_pred ccCCHHHhCcCCC---------eEECCCCcHHHHHHHHHHcCCCEEEEEcC--------CCeEEEEEEHHHHHHHHh
Confidence 3467899998766 89999999999999999999999999997 789999999999988654
No 213
>COG0517 FOG: CBS domain [General function prediction only]
Probab=96.74 E-value=0.004 Score=53.38 Aligned_cols=52 Identities=35% Similarity=0.440 Sum_probs=48.7
Q ss_pred hhhhhhccCceEecCCCCHHHHHHHHHh-cCCcEEEEEeCCC-eEEEEEeHHHH
Q 007694 419 KVSRAMSKDFVKVALTVTLKEAIESMKD-GQQNCVLVVNGED-FLEGILTYGDI 470 (593)
Q Consensus 419 ~v~~~M~~~~~~v~~~~~v~~~~~~l~~-~~~~~~pVvd~~~-~lvGiVt~~dL 470 (593)
++.++|+++..++.++.++.++.+.|.+ .+...+||+|+++ +++|++++.|+
T Consensus 63 ~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di 116 (117)
T COG0517 63 PVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDI 116 (117)
T ss_pred cHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHc
Confidence 5899999999999999999999999999 6999999999986 99999999986
No 214
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=96.69 E-value=0.0035 Score=53.21 Aligned_cols=49 Identities=22% Similarity=0.272 Sum_probs=45.2
Q ss_pred hhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHH
Q 007694 423 AMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 472 (593)
Q Consensus 423 ~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~ 472 (593)
+|.+++.++++++++.++.+.|.+.+.+.+||++ +++++|+++++|+.+
T Consensus 56 ~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK 104 (105)
T ss_pred hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence 8888999999999999999999999999999995 789999999999864
No 215
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.69 E-value=0.0045 Score=53.36 Aligned_cols=57 Identities=25% Similarity=0.180 Sum_probs=48.3
Q ss_pred hhhhhhhhhccCceEecCCCCHHHHHHHHHhcCC---cEEEEEeCCCeEEEEEeHHHHHH
Q 007694 416 EELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQ---NCVLVVNGEDFLEGILTYGDIKR 472 (593)
Q Consensus 416 ~~i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~---~~~pVvd~~~~lvGiVt~~dL~~ 472 (593)
.+.++.++|.+++..+++++++.++++.|.+.+. ...||++++++++|+|+.+|+.+
T Consensus 59 ~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 59 GKKPVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred cCCcHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 4567999999999999999999999999987764 24468888899999999999853
No 216
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=96.60 E-value=0.01 Score=60.38 Aligned_cols=59 Identities=10% Similarity=0.223 Sum_probs=51.7
Q ss_pred hhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhc
Q 007694 418 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKL 477 (593)
Q Consensus 418 i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~ 477 (593)
.++.++|.+.+ ++++++++.++++.|++.+.+.+||+|+.|.++|+||.+|+...+...
T Consensus 133 ~~l~~l~r~~~-~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGe 191 (292)
T PRK15094 133 FSMDKVLRQAV-VVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGE 191 (292)
T ss_pred CCHHHHcCCCc-CcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCC
Confidence 34778887654 899999999999999999999999999989999999999999987543
No 217
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=96.53 E-value=0.0056 Score=51.77 Aligned_cols=47 Identities=28% Similarity=0.484 Sum_probs=42.2
Q ss_pred ceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHHHH
Q 007694 513 LLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLR 568 (593)
Q Consensus 513 ~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~~~ 568 (593)
+.++++++++.++.+.|.+.+.+.+||+|+ ++++|++|.+|+.+...
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---------~~~~G~v~~~dl~~~~~ 49 (110)
T cd04609 3 VVSVAPDDTVSQAIERMREYGVSQLPVVDD---------GRVVGSIDESDLLDALI 49 (110)
T ss_pred cEEECCCCcHHHHHHHHHHcCCceeeEeeC---------CeeEEEEeHHHHHHHHh
Confidence 367889999999999999999999999984 78999999999998754
No 218
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=96.46 E-value=0.005 Score=65.78 Aligned_cols=63 Identities=22% Similarity=0.226 Sum_probs=58.1
Q ss_pred hhhhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhcc
Q 007694 416 EELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLS 478 (593)
Q Consensus 416 ~~i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~ 478 (593)
.+.+++++|.+++..+.++++.+++.+.++++..-..||||++++++|++|.+|+...+.++.
T Consensus 194 ~~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~eEa 256 (451)
T COG2239 194 PDELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEEEA 256 (451)
T ss_pred cHhHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHHHH
Confidence 457799999999999999999999999999999999999999999999999999999876543
No 219
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=96.45 E-value=0.0077 Score=50.62 Aligned_cols=53 Identities=38% Similarity=0.446 Sum_probs=48.3
Q ss_pred hhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHH
Q 007694 420 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 472 (593)
Q Consensus 420 v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~ 472 (593)
+.++|..+...+++++++.++.+.+.+.+...+||+|++++++|+++.+|+.+
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 60 VGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred HHHHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 56788888999999999999999999988899999999899999999999864
No 220
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.43 E-value=0.0097 Score=50.15 Aligned_cols=53 Identities=32% Similarity=0.347 Sum_probs=47.3
Q ss_pred hhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHH
Q 007694 419 KVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 472 (593)
Q Consensus 419 ~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~ 472 (593)
++.++|.+++.++.+++++.++.+.|.+.+.+.+||+|+ ++++|+++.+|+.+
T Consensus 53 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~G~it~~d~~~ 105 (106)
T cd04638 53 QLALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD-GKLVGIVTVADIVR 105 (106)
T ss_pred hHHHHhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 467788888889999999999999999988899999985 79999999999764
No 221
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.41 E-value=0.012 Score=52.97 Aligned_cols=56 Identities=29% Similarity=0.398 Sum_probs=50.3
Q ss_pred hhhhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHH
Q 007694 416 EELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 472 (593)
Q Consensus 416 ~~i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~ 472 (593)
...++.++|.+++.++++++++.++.+.|.+.+...+||+++ ++++|+++.+|+.+
T Consensus 87 ~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 87 GKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred hcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 345788999999999999999999999999998999999987 89999999999853
No 222
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=96.32 E-value=0.006 Score=66.62 Aligned_cols=58 Identities=22% Similarity=0.332 Sum_probs=53.6
Q ss_pred hhhhhhhhcc--CceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHH
Q 007694 417 ELKVSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 474 (593)
Q Consensus 417 ~i~v~~~M~~--~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l 474 (593)
+.+++++|++ ++.++++++++.|+.+.|.+++.+.+||+|++++++|+|+++|+.+..
T Consensus 158 ~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 158 STPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNR 217 (495)
T ss_pred CCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcc
Confidence 4679999997 889999999999999999999999999999999999999999998763
No 223
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.16 E-value=0.0067 Score=60.68 Aligned_cols=113 Identities=14% Similarity=0.155 Sum_probs=81.7
Q ss_pred HHhhhhhhhhhhccCceE--ecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCcccc
Q 007694 413 MLLEELKVSRAMSKDFVK--VALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASD 490 (593)
Q Consensus 413 ~~l~~i~v~~~M~~~~~~--v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~ 490 (593)
+...-++++++|.+.-.. -.+...-..+.+.+.+.....+.+++.+++.+|+|+.+++...
T Consensus 269 ~~~~VltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~----------------- 331 (386)
T COG4175 269 DRSRVLTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLVKA----------------- 331 (386)
T ss_pred ChhheeeHHHhhcccccccccccccccchhhhhhhhccchhhHHHhccCceeeEEeccchhcc-----------------
Confidence 445567889999852111 1222333456777777777777788877789999999886543
Q ss_pred ccccchhhhhccCccccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHHHH
Q 007694 491 VNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLR 568 (593)
Q Consensus 491 ~~~~~V~dim~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~~~ 568 (593)
.+.++ +.++.+|+++.+......+.+. .++|||+ +++++|+|++.+++.++.
T Consensus 332 --------~~~~~---------~~~v~~d~~~~~~~~~~~~~~~-p~aVvde--------~~r~vG~i~~~~vl~aL~ 383 (386)
T COG4175 332 --------ALIDD---------VLTVDADTPLSEILARIRQAPC-PVAVVDE--------DGRYVGIISRGELLEALA 383 (386)
T ss_pred --------ccccc---------ccccCccchHHHHHHHHhcCCC-ceeEEcC--------CCcEEEEecHHHHHHHHh
Confidence 11111 2577889999999999888776 5789998 899999999999998875
No 224
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=96.11 E-value=0.011 Score=64.18 Aligned_cols=59 Identities=24% Similarity=0.343 Sum_probs=54.0
Q ss_pred hhhhhhhhc-cCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHh
Q 007694 417 ELKVSRAMS-KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLS 475 (593)
Q Consensus 417 ~i~v~~~M~-~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~ 475 (593)
..++.++|+ +++.++++++++.++++.|.+++.+.+||+|++++++|+|+++|+.+.+.
T Consensus 142 ~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~ 201 (450)
T TIGR01302 142 GKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRK 201 (450)
T ss_pred CCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhccc
Confidence 457899999 48999999999999999999999999999999999999999999988753
No 225
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=95.97 E-value=0.0082 Score=64.19 Aligned_cols=59 Identities=17% Similarity=0.244 Sum_probs=51.3
Q ss_pred cchhhhhccCccccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHHHHH
Q 007694 494 CLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLRE 569 (593)
Q Consensus 494 ~~V~dim~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~~~~ 569 (593)
..+.+++..++ ++|++++++.+|.+.|.+.+.+.+.|+++ +++..||||++|+.+..-.
T Consensus 149 trv~~~~~~~~---------~~v~~~~~i~~aa~km~~~gv~s~v~l~~--------~~~~~GIvT~~dl~~~v~~ 207 (610)
T COG2905 149 TRVGEVKTLPA---------VTVSPQASIQDAARKMKDEGVSSLVVLDD--------SGPLLGIVTRKDLRSRVIA 207 (610)
T ss_pred HHHHHHhcCCC---------cccCccCcHHHHHHHHHhcCCCeEEEEcC--------CCCccceeehHHHHHHHHh
Confidence 45667776655 89999999999999999999999999997 8999999999999887653
No 226
>PRK11573 hypothetical protein; Provisional
Probab=95.94 E-value=0.014 Score=62.51 Aligned_cols=62 Identities=8% Similarity=0.092 Sum_probs=53.6
Q ss_pred cccchhhhhccCccccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHHH
Q 007694 492 NTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCL 567 (593)
Q Consensus 492 ~~~~V~dim~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~~ 567 (593)
.+.+++|+|.+.. +...++.+++++++.+.+.+++.+++||.+++ .++++|+++.+|++...
T Consensus 185 ~~~~v~eiMtPr~-------~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~-------~D~IiGiv~~kDll~~~ 246 (413)
T PRK11573 185 EKVTVDDIMVPRN-------EIVGIDINDDWKSILRQLTHSPHGRIVLYRDS-------LDDAISMLRVREAYRLM 246 (413)
T ss_pred CCCChhhcCCccc-------eEEEEECCCCHHHHHHHHHhCCCceEEEEcCC-------CCceEEEEEHHHHHHHh
Confidence 3568999999853 56899999999999999999999999999863 47899999999998754
No 227
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=95.71 E-value=0.025 Score=59.35 Aligned_cols=57 Identities=23% Similarity=0.324 Sum_probs=51.6
Q ss_pred hhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhh
Q 007694 419 KVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 476 (593)
Q Consensus 419 ~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~ 476 (593)
.+.+.|..+..++++++++.+++..+.++++. +||+|++++++|+|++.++...+..
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~ 359 (363)
T TIGR01186 303 GLQDVLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYD 359 (363)
T ss_pred chhhhhccCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence 46777888888999999999999999998888 9999999999999999999988754
No 228
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=95.36 E-value=0.026 Score=60.88 Aligned_cols=65 Identities=18% Similarity=0.260 Sum_probs=55.9
Q ss_pred cccchhhhhccCccccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHHHHHH
Q 007694 492 NTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLREE 570 (593)
Q Consensus 492 ~~~~V~dim~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~~~~~ 570 (593)
++.+++++|+++. +...++.+++.+++.+.+.+.+++++||+++ + .+.++|+++.+|++....+.
T Consensus 204 ~~~~v~eiMtPR~-------~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~-~------~D~iiGiv~~Kdll~~~~~~ 268 (429)
T COG1253 204 DDRTVREIMTPRT-------DIVALDLTDTVEELIELILESGHSRIPVYDG-D------LDNIIGIVHVKDLLRALLDG 268 (429)
T ss_pred CCcEeeeEeeecc-------cEEEEcCCCCHHHHHHHHHhCCCCeeeEEcC-C------CCcEEEEEEHHHHHHHHhcC
Confidence 4568999999853 5688888999999999999999999999993 2 67899999999999877644
No 229
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=95.05 E-value=0.0057 Score=58.19 Aligned_cols=98 Identities=17% Similarity=0.287 Sum_probs=71.7
Q ss_pred CCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCCccccccccchhhhhccCccccCCCCcc
Q 007694 434 TVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISYRGRERGL 513 (593)
Q Consensus 434 ~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~V~dim~~~~~~~~~~~~~ 513 (593)
--+..|+++++++..++.+ .|.+ |++.+...+. ..+..|+|+|.++. ..
T Consensus 31 pknr~eLl~liRdse~n~L--iD~d-------t~~mlEGvm~---------------iadl~vrDiMIPRS-------QM 79 (293)
T COG4535 31 PKNREELLELIRDSEQNEL--IDAD-------TLDMLEGVMD---------------IADLRVRDIMIPRS-------QM 79 (293)
T ss_pred CcCHHHHHHHHHHhhhccc--cChh-------HHHHHHHHHH---------------HHHhhHhhhcccHH-------Hh
Confidence 4467889999988766543 3322 2222222221 12347889998743 45
Q ss_pred eEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHHHHH
Q 007694 514 LTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLRE 569 (593)
Q Consensus 514 ~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~~~~ 569 (593)
.++..+.++.+....+.+...+++||+.++ .+.+.||+..+|+++.++.
T Consensus 80 ~~l~~~~~l~~~l~~iiesaHSRfPVi~ed-------kD~v~GIL~AKDLL~~~~~ 128 (293)
T COG4535 80 ITLKRNQTLDECLDVIIESAHSRFPVISED-------KDHVEGILLAKDLLPFMRS 128 (293)
T ss_pred eeccccCCHHHHHHHHHHhccccCCcccCC-------chhhhhhhhHHHHHHHhcC
Confidence 788899999999999999999999999874 4789999999999997763
No 230
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=94.64 E-value=0.083 Score=56.22 Aligned_cols=58 Identities=21% Similarity=0.273 Sum_probs=50.7
Q ss_pred hhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhc
Q 007694 419 KVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKL 477 (593)
Q Consensus 419 ~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~ 477 (593)
.+.+.+.++..++++++++.+++..+.++... +||+|++++++|+|++.++.+.+...
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~~ 395 (400)
T PRK10070 338 GLDAALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDRE 395 (400)
T ss_pred chhhhhccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHhc
Confidence 56677788888999999999999999886655 99999999999999999999987654
No 231
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=93.98 E-value=0.032 Score=56.92 Aligned_cols=64 Identities=16% Similarity=0.179 Sum_probs=54.3
Q ss_pred cchhhhhccCccccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHHHHHHH
Q 007694 494 CLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLREEV 571 (593)
Q Consensus 494 ~~V~dim~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~~~~~~ 571 (593)
.+|.|+|.++- +...+.-|++.+++++.+.+..+.++||-.++- +.++|+++.+|+++.+.+.-
T Consensus 200 ~tV~DIMvpR~-------~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~-------DnIiGvlh~r~llr~l~e~~ 263 (423)
T COG4536 200 LTVSDIMVPRN-------EIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDL-------DNIIGVLHVRDLLRLLNEKN 263 (423)
T ss_pred ceeeeeecccc-------ceeeecCCCCHHHHHHHHhhCCCCceeeecCCh-------hHhhhhhhHHHHHHHhhccC
Confidence 48899998743 457788999999999999999999999998643 45999999999999987654
No 232
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=93.49 E-value=0.08 Score=54.53 Aligned_cols=58 Identities=33% Similarity=0.328 Sum_probs=53.0
Q ss_pred hhhhhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHH
Q 007694 416 EELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRC 473 (593)
Q Consensus 416 ~~i~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~ 473 (593)
....+.++|+.+.++.+.+.+++++-++|++++...+||||+++.++.++++.||.+.
T Consensus 169 ~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 169 NSLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKN 226 (503)
T ss_pred ccchhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhh
Confidence 3456889999998889999999999999999999999999999999999999999765
No 233
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=87.56 E-value=1.2 Score=47.06 Aligned_cols=54 Identities=11% Similarity=0.224 Sum_probs=44.6
Q ss_pred hhhhhhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHh
Q 007694 419 KVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLS 475 (593)
Q Consensus 419 ~v~~~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~ 475 (593)
++.+ +.++..++++++++.+++....++++ -++|+|+ |+++|+|++.+++..+.
T Consensus 327 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~-~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 327 EVES-LEAAPTVINPDTLMRDVLAARHRTGG-AILLVEN-GRIVGVIGDDNIYHALL 380 (382)
T ss_pred chhh-hcccCcccCCCCcHHHHHHHHhcCCC-CeEEeeC-CeEEEEEeHHHHHHHHh
Confidence 3555 66678889999999999998887664 4788885 99999999999988764
No 234
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=86.78 E-value=3.6 Score=40.53 Aligned_cols=114 Identities=15% Similarity=0.033 Sum_probs=66.3
Q ss_pred CCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhcc-CCCCCCC-CccccccccchhhhhccCccccCCCC
Q 007694 434 TVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLS-SDNSKGD-SIASDVNTCLVSSICTRGISYRGRER 511 (593)
Q Consensus 434 ~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~-~~~~~~~-~~~~~~~~~~V~dim~~~~~~~~~~~ 511 (593)
+-.+.|++++- +.+.|.+ +|+++-+=+.++++..-...- .+....+ .........++.|.+.+.... +
T Consensus 193 THDidEA~kLa-----dri~vm~-~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~~~---~- 262 (309)
T COG1125 193 THDIDEALKLA-----DRIAVMD-AGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGEPA---D- 262 (309)
T ss_pred ecCHHHHHhhh-----ceEEEec-CCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhcccccc---c-
Confidence 44566777652 2345555 788999989887764311000 0000000 001111223555555543210 1
Q ss_pred cceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHH
Q 007694 512 GLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNC 566 (593)
Q Consensus 512 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~ 566 (593)
-..+.......+++..+...+...+||+|+ +|+++|.||++|+++.
T Consensus 263 -~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~--------~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 263 -GEPLLEGFVDRDALSDFLARGRSVLPVVDE--------DGRPLGTVTRADLLDE 308 (309)
T ss_pred -CCccccchhhHHHHHHHHhcCCceeEEECC--------CCcEeeEEEHHHHhhh
Confidence 122334556667888888999999999998 8999999999998764
No 235
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=86.60 E-value=1.3 Score=48.61 Aligned_cols=130 Identities=15% Similarity=0.066 Sum_probs=83.9
Q ss_pred HHHHhhhhhhhhhhcc--CceEecCCCCHH-HHHHHHHhcCCcEEEEEeCCCe-EEEEEeHHHHHHHHhhccCCCCCCCC
Q 007694 411 EEMLLEELKVSRAMSK--DFVKVALTVTLK-EAIESMKDGQQNCVLVVNGEDF-LEGILTYGDIKRCLSKLSSDNSKGDS 486 (593)
Q Consensus 411 ~~~~l~~i~v~~~M~~--~~~~v~~~~~v~-~~~~~l~~~~~~~~pVvd~~~~-lvGiVt~~dL~~~l~~~~~~~~~~~~ 486 (593)
-...+....++++|++ ++..++.+..+. +......+.+++.+||.+.+.+ .+|..-...+...++....
T Consensus 197 g~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~~~~~------- 269 (498)
T KOG2118|consen 197 GALELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQVEVP------- 269 (498)
T ss_pred hhHHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhccccc-------
Confidence 3456888999999997 556666677665 5555566788999999987532 2333222222222211110
Q ss_pred ccccccccchhhhhccCccccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHHH
Q 007694 487 IASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNC 566 (593)
Q Consensus 487 ~~~~~~~~~V~dim~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~~ 566 (593)
....++.+.+..+. ..+++++++.+..+.|++.+.+.+.|.+ ...-.++++..|+ ..
T Consensus 270 ----~~~~~v~~~~~~~l---------~~vp~~~~~~~~l~~~~~~~~H~~~v~~---------~~~~~~~~~l~~~-~~ 326 (498)
T KOG2118|consen 270 ----LEPLPVSESALLRL---------PLVPENMPLLDLLNEFQKGKSHMAVVRN---------GHVDIFVLTLEDL-EE 326 (498)
T ss_pred ----cccccchhhhcccc---------ccCCCcccHHHHHHHHhhhhceeEEEec---------CCcceeeEeccch-hh
Confidence 12345666665544 6778999999999999988776554444 4567899999987 44
Q ss_pred HHHH
Q 007694 567 LREE 570 (593)
Q Consensus 567 ~~~~ 570 (593)
..++
T Consensus 327 ~~~e 330 (498)
T KOG2118|consen 327 VVKE 330 (498)
T ss_pred hcce
Confidence 4433
No 236
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=79.03 E-value=4 Score=41.46 Aligned_cols=53 Identities=23% Similarity=0.401 Sum_probs=44.4
Q ss_pred hhccCceEecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhh
Q 007694 423 AMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 476 (593)
Q Consensus 423 ~M~~~~~~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~ 476 (593)
.+.+++..+++++++.+.+....+.+ ..++|+|++++++|++++.++..++..
T Consensus 332 ~~~~~~~~v~~d~~~~~~~~~~~~~~-~p~aVvde~~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 332 ALIDDVLTVDADTPLSEILARIRQAP-CPVAVVDEDGRYVGIISRGELLEALAR 384 (386)
T ss_pred cccccccccCccchHHHHHHHHhcCC-CceeEEcCCCcEEEEecHHHHHHHHhc
Confidence 55667788999999999998877654 568999999999999999999888653
No 237
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=69.76 E-value=9.3 Score=37.76 Aligned_cols=60 Identities=17% Similarity=0.169 Sum_probs=41.1
Q ss_pred HHhhhhhhhhhhccCce----EecCCCCHHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHH
Q 007694 413 MLLEELKVSRAMSKDFV----KVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 472 (593)
Q Consensus 413 ~~l~~i~v~~~M~~~~~----~v~~~~~v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~ 472 (593)
..+...++.+.|.+... .+.....-++++..+.......+||+|++++++|.+++.++..
T Consensus 244 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~ 307 (309)
T COG1125 244 RLLSLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLD 307 (309)
T ss_pred cccchhhHHHhhcccccccCCccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhh
Confidence 34455667777765432 1223334455555555667788999999999999999999865
No 238
>PRK10490 sensor protein KdpD; Provisional
Probab=61.88 E-value=37 Score=40.44 Aligned_cols=54 Identities=15% Similarity=0.204 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHhhhcCCccceeccccCCCccchHHHHHHHHHHHHHHHHHHHH
Q 007694 122 MIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYLILGMLCGVVSVVFTR 176 (593)
Q Consensus 122 ~~~~a~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~~llGv~~Gl~g~~f~~ 176 (593)
+.++||+++.++++++|- .|.|++.-.+.-.+..+.+++++|+++|.++.-..+
T Consensus 447 pai~aavls~l~~nfFF~-~P~~Tf~v~~~~~~~t~~v~l~va~v~~~l~~r~r~ 500 (895)
T PRK10490 447 PSVVATVINVASFDLFFV-APRGTLAVSDVQYLLTFAVMLTVGLVIGNLTAGVRY 500 (895)
T ss_pred HHHHHHHHHHHHHHheeC-CCceEEEEcCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888888888887763 456665544444455666677777777766654443
No 239
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=58.52 E-value=15 Score=31.93 Aligned_cols=17 Identities=24% Similarity=0.749 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007694 158 PLYLILGMLCGVVSVVF 174 (593)
Q Consensus 158 ~~~~llGv~~Gl~g~~f 174 (593)
...|++||++|++|..+
T Consensus 66 i~~Ii~gv~aGvIg~Il 82 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIIL 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHH
Confidence 36789999999998775
No 240
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=56.20 E-value=83 Score=36.35 Aligned_cols=77 Identities=16% Similarity=0.219 Sum_probs=47.1
Q ss_pred hhhchHHHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHhhhcCCccceeccccCCCccchHHHHHHHHHHHHHH
Q 007694 91 GFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYLILGMLCGVV 170 (593)
Q Consensus 91 ~F~aPi~G~lf~~E~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~~llGv~~Gl~ 170 (593)
.|....-..+|-+-++.-.... .+ ++.++||+++.++++++|- .|.|++.-++.-...-+..++..|++.|-+
T Consensus 419 ~~~~~ni~mvFllgVlv~av~~-g~-----~pa~~aailsvl~fNyFF~-ePryTf~v~d~~y~vTf~vml~vai~t~~L 491 (890)
T COG2205 419 FFDLANIVMLFLLGVLVVAVLT-GR-----WPAVLAALLSVLVFNYFFT-EPRYTFAVSDPQYLVTFAVMLAVALLTGNL 491 (890)
T ss_pred hccchhHHHHHHHHHHHHHHHh-ch-----HHHHHHHHHHHHHHhheec-CCceEEEEecCchHHHHHHHHHHHHHHHHH
Confidence 5788888888888886533222 22 3478999999999988773 455555444442333344445555555555
Q ss_pred HHHH
Q 007694 171 SVVF 174 (593)
Q Consensus 171 g~~f 174 (593)
..-.
T Consensus 492 t~~v 495 (890)
T COG2205 492 TARV 495 (890)
T ss_pred HHHH
Confidence 4433
No 241
>COG3216 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.00 E-value=1.6e+02 Score=27.31 Aligned_cols=26 Identities=38% Similarity=0.554 Sum_probs=19.0
Q ss_pred HHhhhHHHHHHhhhchHHHHHHHHHhc
Q 007694 80 VAAGAASGIASGFNAAVAGCFFAIETV 106 (593)
Q Consensus 80 ~~~g~aagiaa~F~aPi~G~lf~~E~~ 106 (593)
+++|.|+|+.++|- |+-|.=+++-..
T Consensus 46 vA~gvAaG~faaf~-Pf~g~h~iiAa~ 71 (184)
T COG3216 46 VAAGVAAGVFAAFF-PFFGLHMIIAAV 71 (184)
T ss_pred HHHHHHHHHHHHhc-ccchHHHHHHHH
Confidence 78999999999984 655555555543
No 242
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.67 E-value=72 Score=26.99 Aligned_cols=37 Identities=11% Similarity=0.104 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHhhhHHHHHHh
Q 007694 55 VDIGKSCANGFSLMMENNRERKIALVAAGAASGIASG 91 (593)
Q Consensus 55 v~iga~~~~~~~~~~~~~~~~~~~l~~~g~aagiaa~ 91 (593)
+.+|+.+|..+-+++...+.--..++..|..||+=-+
T Consensus 56 ilVGa~iG~llD~~agTsPwglIv~lllGf~AG~lnv 92 (116)
T COG5336 56 ILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGAGVLNV 92 (116)
T ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 5678899999999998888777778888998887443
No 243
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=35.53 E-value=27 Score=21.43 Aligned_cols=21 Identities=19% Similarity=0.377 Sum_probs=16.5
Q ss_pred HHHHHHhhhHHHHHHhhhchH
Q 007694 76 KIALVAAGAASGIASGFNAAV 96 (593)
Q Consensus 76 ~~~l~~~g~aagiaa~F~aPi 96 (593)
||+++..+.+++.++++..+.
T Consensus 4 RR~fLk~~~a~~a~~~~~~~~ 24 (26)
T PF10518_consen 4 RRQFLKGGAAAAAAAALGGCA 24 (26)
T ss_pred HHHHHHHHHHHHHHHHhcccc
Confidence 446888899998888887764
No 244
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=34.90 E-value=4.7e+02 Score=26.05 Aligned_cols=53 Identities=17% Similarity=0.353 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchHhhhhHHHHHHHHhhcccc
Q 007694 156 ELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGI 217 (593)
Q Consensus 156 ~l~~~~llGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iggl~~g~~~~~~p~~ 217 (593)
++...++.|+-+.+.-..|.|+++++-+.++. .....+.|+++|-+...+|..
T Consensus 187 ~~~~L~~f~~G~~~Gi~~~skll~~ll~~~~~---------~t~~~i~GlviGSl~~i~P~~ 239 (257)
T PF04018_consen 187 NIPVLIPFGIGVVIGILLFSKLLSYLLKRYRS---------QTYAFIIGLVIGSLRAIWPWK 239 (257)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHhHHhccCC
Confidence 44555555555555556788888877665432 224567788888877777844
No 245
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=32.96 E-value=76 Score=34.63 Aligned_cols=38 Identities=24% Similarity=0.318 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEehhhHHH
Q 007694 519 DTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWN 565 (593)
Q Consensus 519 ~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt~~di~~ 565 (593)
...++.+.+...+.+-.-++|++ ++++.|+|..+|+++
T Consensus 412 p~~l~~~~~~vs~~GGTPL~V~~---------~~~~~GVI~LkDivK 449 (681)
T COG2216 412 PEDLDAAVDEVSRLGGTPLVVVE---------NGRILGVIYLKDIVK 449 (681)
T ss_pred CHHHHHHHHHHHhcCCCceEEEE---------CCEEEEEEEehhhcc
Confidence 34689999999999999999998 699999999999875
No 246
>PF13493 DUF4118: Domain of unknown function (DUF4118); PDB: 2KSF_A.
Probab=27.17 E-value=84 Score=26.08 Aligned_cols=50 Identities=16% Similarity=0.327 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhhhcCCccce--eccccCCCccchHHHHHHHHHHHHHHHH
Q 007694 123 IILASVISSTVSTVLLGTQSAF--TVPSYDLKSAAELPLYLILGMLCGVVSV 172 (593)
Q Consensus 123 ~~~a~~~~~~~~~~~~~~~~~f--~~~~~~~~~~~~l~~~~llGv~~Gl~g~ 172 (593)
.+++++.++......+-..+.+ ....++..++..+..++++|+++|.+..
T Consensus 49 gl~aa~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~va~v~g~l~~ 100 (105)
T PF13493_consen 49 GLFAALLSSLLLNFFFFPPPFYDLTFLVYDPQDWITFAVFLVVALVTGYLAD 100 (105)
T ss_dssp -SHHHHHHHHHHHHTTS-SS----TT-SS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCccccchhhcChhHHHHHHHHHHHHHHHHHHHH
Confidence 3556666655443222222222 2222333334455666777777776543
No 247
>PF10749 DUF2534: Protein of unknown function (DUF2534); InterPro: IPR019685 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae.
Probab=25.98 E-value=2.4e+02 Score=22.61 Aligned_cols=63 Identities=21% Similarity=0.442 Sum_probs=38.6
Q ss_pred ccccCChhHHHHHHHHHHHHHHHHhhhcCC-ccceeccccCCCccchHHHHHHHHHHHHHHHHHHHHH
Q 007694 111 RAENSPPFTTAMIILASVISSTVSTVLLGT-QSAFTVPSYDLKSAAELPLYLILGMLCGVVSVVFTRL 177 (593)
Q Consensus 111 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~f~~~~~~~~~~~~l~~~~llGv~~Gl~g~~f~~~ 177 (593)
+.++-.+|..+.+.+..++++.+.|.-+|. ...|+.| ++ -|..-.|++=|.-.-+.+..|.-+
T Consensus 8 k~~~~kkFl~~l~~vfiia~~Vv~rAt~gGVi~qYniP-~s---~WttsMf~~Q~ami~vYS~VFT~L 71 (85)
T PF10749_consen 8 KTKEGKKFLLALAIVFIIAATVVGRATIGGVIEQYNIP-FS---EWTTSMFILQGAMILVYSIVFTIL 71 (85)
T ss_pred cChhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCCC-hh---hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344445666665666667777788876654 3456665 32 355567777777666666666543
No 248
>PF13782 SpoVAB: Stage V sporulation protein AB
Probab=23.26 E-value=2.4e+02 Score=24.13 Aligned_cols=29 Identities=14% Similarity=0.277 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007694 158 PLYLILGMLCGVVSVVFTRLVAWFTKSFD 186 (593)
Q Consensus 158 ~~~~llGv~~Gl~g~~f~~~~~~~~~~~~ 186 (593)
++.+.-|++.|.++....-....+--+.+
T Consensus 53 i~GL~~GiFvG~la~ALaEvlnv~PIlar 81 (110)
T PF13782_consen 53 IFGLFAGIFVGCLAAALAEVLNVFPILAR 81 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555444433333
No 249
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=22.21 E-value=1.1e+02 Score=34.87 Aligned_cols=116 Identities=16% Similarity=0.146 Sum_probs=63.2
Q ss_pred hhhccCceEecCCCC-HHHHHHHHHhcCCcEEEEEeCCCeEEEEEeHHHHHHHHhhccCCCCCCCC-ccccccccchhhh
Q 007694 422 RAMSKDFVKVALTVT-LKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDS-IASDVNTCLVSSI 499 (593)
Q Consensus 422 ~~M~~~~~~v~~~~~-v~~~~~~l~~~~~~~~pVvd~~~~lvGiVt~~dL~~~l~~~~~~~~~~~~-~~~~~~~~~V~di 499 (593)
+.+.++-..+....+ +.++.+.+.+.+ ..+.+.|.+|.++.+....++...+..... .+|.. ......+.-+.-.
T Consensus 45 ~~~~~~~~ll~~a~~~l~~l~~~l~~~~-~~~~l~D~~G~vL~~~g~~~~~~~~~~~~~--~~G~~w~E~~~GTnaig~a 121 (638)
T PRK11388 45 SIYRRKKALLTLGQAALEDAWEYMADRE-CALLILDETGCILSRNGDPQTLQQLSALGF--NDGTYCAEGIIGTNALSLA 121 (638)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhcCCC-cEEEEEcCCceEEEEeCCHHHHHHHHHcCC--ccCCccchhccCcCHHHHH
Confidence 333333333444444 455666666555 788899999999998888887765443111 00100 0000000011111
Q ss_pred hccCccccCCCCcceEecCCCCHHHHHHHHHHcCCcccceeecchhhhhccCCeEEEEEe
Q 007694 500 CTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILH 559 (593)
Q Consensus 500 m~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~~~~~~~~~lvGiIt 559 (593)
.. ...++.|.......+ .+....+...||.|. +|+++|+|+
T Consensus 122 l~--------~~~pv~v~g~EH~~~---~~~~~~c~aaPI~d~--------~G~liGvl~ 162 (638)
T PRK11388 122 AI--------SGQPVKTMGDQHFKQ---ALHNWAFCATPVFDS--------KGRLTGTIA 162 (638)
T ss_pred Hh--------cCCceEEecHHHHHH---hccCceEEeeEEEcC--------CCCEEEEEE
Confidence 11 223456665554443 344456778999987 799999996
No 250
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=21.03 E-value=4.9e+02 Score=26.63 Aligned_cols=16 Identities=38% Similarity=0.513 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHhhhc
Q 007694 123 IILASVISSTVSTVLL 138 (593)
Q Consensus 123 ~~~a~~~~~~~~~~~~ 138 (593)
++++++.++++...++
T Consensus 11 ~i~g~~lG~~~~p~ll 26 (356)
T COG4956 11 IIIGAVLGFAVIPELL 26 (356)
T ss_pred HHHHhhhhHhhHHHHH
Confidence 4667777777664333
No 251
>PF10399 UCR_Fe-S_N: Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; InterPro: IPR019470 This entry represents the TAT-signal region found in the iron-sulphur subunit of Ubiquinol-cytochrome C reductase (also known as the cytochrome bc1 complex). This enzymex is an oligomeric membrane protein complex that is a component of respiratory and photosynthetic electron transfer chains. It couples the transfer of electrons from ubiquinol to cytochrome c with the generation of a protein gradient across the membrane []. This entry is associated with IPR017941 from INTERPRO, IPR004192 from INTERPRO and IPR015248 from INTERPRO. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0055114 oxidation-reduction process; PDB: 1ZRT_R 2QJY_R 2FYN_L 2QJK_O 2QJP_I 2YIU_F.
Probab=20.26 E-value=1.2e+02 Score=20.98 Aligned_cols=20 Identities=20% Similarity=0.361 Sum_probs=9.2
Q ss_pred CHHHHHHH-HHhhhHHHHHHh
Q 007694 72 NRERKIAL-VAAGAASGIASG 91 (593)
Q Consensus 72 ~~~~~~~l-~~~g~aagiaa~ 91 (593)
+..||+-| ++.++.++++++
T Consensus 8 ~~~RRdFL~~at~~~gavG~~ 28 (41)
T PF10399_consen 8 DPTRRDFLTIATSAVGAVGAA 28 (41)
T ss_dssp --HHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHH
Confidence 44566544 355555555543
Done!