RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 007694
(593 letters)
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli
[TaxId: 562]}
Length = 444
Score = 169 bits (429), Expect = 3e-47
Identities = 81/320 (25%), Positives = 134/320 (41%), Gaps = 15/320 (4%)
Query: 33 IKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFS-LMMENNRERKIALVAAGAASGIASG 91
+K TLG G LG EGP+V IG + + E + L+A GAA+G+A+
Sbjct: 114 VKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLDIFRLKGDEARHTLLATGAAAGLAAA 173
Query: 92 FNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDL 151
FNA +AG F IE + R + + + ++S+ + + + V
Sbjct: 174 FNAPLAGILFIIEEMRPQFR---YTLISIKAVFIGVIMSTIMYRIFNHEVALIDVGKLSD 230
Query: 152 KSAAELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIA 211
L LYLILG++ G+ +F + V + V+ G G++
Sbjct: 231 APLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLG 290
Query: 212 LRYPGILYWGFTNVEEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSL 271
P GF + + + + V+ T LC SG GG++AP L
Sbjct: 291 FVAPATSGGGFNLIPIATAGNFSMGMLVFIFVAR-----VITTLLCFSSGAPGGIFAPML 345
Query: 272 MIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFEL 331
+G +G FG + P E +A+ GM A LA+ PLT ++L+ E+
Sbjct: 346 ALGTVLGTAFG----MVAVELFPQYHL--EAGTFAIAGMGALLAASIRAPLTGIILVLEM 399
Query: 332 TRDYRILLPLMGAVGLAIWV 351
T +Y+++LP++ A +
Sbjct: 400 TDNYQLILPMIITGLGATLL 419
Score = 55.6 bits (133), Expect = 9e-09
Identities = 40/200 (20%), Positives = 67/200 (33%), Gaps = 24/200 (12%)
Query: 161 LILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFG-------LPPVVCPALGGLGAGIIALR 213
++G L G+ +V F + VAW +C A+ + + +
Sbjct: 24 AVVGTLVGLAAVAFDKGVAWLQNQRMGALVHTADNYPLLLTVAFLCSAVLAMFGYFLVRK 83
Query: 214 Y-PGILYWGFTNVEEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLM 272
Y P G +E L + P W K G G+V G P++
Sbjct: 84 YAPEAGGSGIPEIEGALEDQR----PVRWWRV--LPVKFFGGLGTLGGGMVLGREGPTVQ 137
Query: 273 IGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFE-L 331
IG +G + I G AA LA+ + PL +L + E +
Sbjct: 138 IGGNIGRMVL---------DIFRLKGDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEM 188
Query: 332 TRDYRILLPLMGAVGLAIWV 351
+R L + AV + + +
Sbjct: 189 RPQFRYTLISIKAVFIGVIM 208
>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 132
Score = 50.9 bits (121), Expect = 2e-08
Identities = 24/155 (15%), Positives = 50/155 (32%), Gaps = 29/155 (18%)
Query: 417 ELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 476
+ + M+K + V + +++EA M + ++V+N + + G T DI
Sbjct: 4 KAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDI------ 57
Query: 477 LSSDNSKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQ 536
+ G V + ++ T +T L M IK
Sbjct: 58 IRRVIVPGLPYDIPVERIMTRNLI--------------TANVNTPLGEVLRKMAEHRIKH 103
Query: 537 LPVIKRSRELQRRRKQRIVAILHYDSIWNCLREEV 571
+ + + + +IV I + R +
Sbjct: 104 ILIEE---------EGKIVGIFTLSDLLEASRRRL 129
>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio
cholerae [TaxId: 666]}
Length = 139
Score = 49.9 bits (118), Expect = 6e-08
Identities = 29/153 (18%), Positives = 51/153 (33%), Gaps = 21/153 (13%)
Query: 418 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKL 477
+KV M++ + T TL +A M+ V +V+ L GI++ D+
Sbjct: 2 IKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESS 61
Query: 478 SSDNSKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQL 537
+++GDS+A + V + P L + M+ I L
Sbjct: 62 LQRSAQGDSLAFETPLFEVMHTDV------------TSVAPQAGLKESAIYMQKHKIGCL 109
Query: 538 PVIKRSRELQRRRKQRIVAILHYDSIWNCLREE 570
PV+ K +V I+
Sbjct: 110 PVVA---------KDVLVGIITDSDFVTIAINL 133
Score = 30.3 bits (67), Expect = 0.33
Identities = 15/80 (18%), Positives = 32/80 (40%)
Query: 511 RGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLREE 570
R T L AK LMEA I+ +P++ +++L QR + S+ + +
Sbjct: 10 RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGD 69
Query: 571 VNHRKSVYQHSKDKNLEEIS 590
++ ++ ++
Sbjct: 70 SLAFETPLFEVMHTDVTSVA 89
>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem
{Thermotoga maritima [TaxId: 2336]}
Length = 121
Score = 45.7 bits (107), Expect = 1e-06
Identities = 22/153 (14%), Positives = 46/153 (30%), Gaps = 34/153 (22%)
Query: 418 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKL 477
+KV + +++DF V + T++E + M+ Q N +V + E G++ D+
Sbjct: 1 MKVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDL---- 56
Query: 478 SSDNSKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQL 537
+ + + ++ A L L
Sbjct: 57 ----------------------DLDSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYL 94
Query: 538 PVIKRSRELQRRRKQRIVAILHYDSIWNCLREE 570
PV+ + R+ + L E
Sbjct: 95 PVVD--------EEMRLKGAVSLHDFLEALIEA 119
>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 156
Score = 45.8 bits (107), Expect = 2e-06
Identities = 27/141 (19%), Positives = 50/141 (35%), Gaps = 12/141 (8%)
Query: 417 ELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 476
+++ + V LK A++++ + VV+ E L GI+ D+ R
Sbjct: 3 GVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEI 62
Query: 477 LSSDNSKGDSIASDVNTCLVSSICTRGISYRGRE-----------RGLLTCYPDTDLAIA 525
+ S + AS ++ S T + R ++ P +
Sbjct: 63 VRIMKS-TELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEV 121
Query: 526 KELMEAKGIKQLPVIKRSREL 546
M I+QLPVI+ +L
Sbjct: 122 ALKMAKYSIEQLPVIRGEGDL 142
Score = 32.7 bits (73), Expect = 0.059
Identities = 17/88 (19%), Positives = 33/88 (37%)
Query: 387 WRRTDGADELELSVVENAADSEAAEEMLLEELKVSRAMSKDFVKVALTVTLKEAIESMKD 446
+ E E + + E+ L V+ M++D + +T+ E M
Sbjct: 68 STELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAK 127
Query: 447 GQQNCVLVVNGEDFLEGILTYGDIKRCL 474
+ V+ GE L G++ D+ + L
Sbjct: 128 YSIEQLPVIRGEGDLIGLIRDFDLLKVL 155
>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 142
Score = 45.3 bits (106), Expect = 2e-06
Identities = 19/153 (12%), Positives = 47/153 (30%), Gaps = 27/153 (17%)
Query: 418 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKL 477
++V + M+ +F V T+ +A++ M + ++V + G+L+ I +
Sbjct: 3 MRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKR---- 58
Query: 478 SSDNSKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQL 537
+ + + D D+ + G+++
Sbjct: 59 ---------------FIPRNKKPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERC 103
Query: 538 PVIKRSRELQRRRKQRIVAILHYDSIWNCLREE 570
V+ R+V I+ + L
Sbjct: 104 AVVD--------DPGRVVGIVTLTDLSRYLSRA 128
Score = 33.7 bits (76), Expect = 0.022
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 439 EAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLS 478
+ + + VV+ + GI+T D+ R LS+ S
Sbjct: 90 DVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSRAS 129
>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit
gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 159
Score = 45.2 bits (106), Expect = 3e-06
Identities = 22/153 (14%), Positives = 47/153 (30%), Gaps = 15/153 (9%)
Query: 414 LLEELKVSRAM--SKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGE-DFLEGILTYGDI 470
++ + + S V ++ +K+A ++ + + + G+LT D
Sbjct: 9 FMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDF 68
Query: 471 KRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELME 530
L + + R + + + L+ P+ L A +
Sbjct: 69 INILHRYYKSALVQIYELEEHKIE-----TWREVYLQDSFKPLVCISPNASLFDAVSSLI 123
Query: 531 AKGIKQLPVIKRSRELQRRRKQRIVAILHYDSI 563
I +LPVI + IL + I
Sbjct: 124 RNKIHRLPVID-------PESGNTLYILTHKRI 149
Score = 39.8 bits (92), Expect = 2e-04
Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 419 KVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDF-LEGILTYGDIKRCLSKL 477
+ K V ++ +L +A+ S+ + + + V++ E ILT+ I + L
Sbjct: 97 VYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLF 156
Query: 478 SSD 480
++
Sbjct: 157 ITE 159
>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga
maritima [TaxId: 2336]}
Length = 145
Score = 44.6 bits (104), Expect = 4e-06
Identities = 24/156 (15%), Positives = 51/156 (32%), Gaps = 22/156 (14%)
Query: 419 KVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLS 478
V + +S V ++E ++ + + + V ++ L G++ + +
Sbjct: 5 DVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHF 64
Query: 479 SDNSKGDSI----ASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGI 534
+ + + S I + + DT L A +LM I
Sbjct: 65 FGFIPKEELIRSSMKRLIAKNASEIMLD----------PVYVHMDTPLEEALKLMIDNNI 114
Query: 535 KQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLREE 570
+++PV+ K IV L+ I L +
Sbjct: 115 QEMPVVD--------EKGEIVGDLNSLEILLALWKG 142
>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein,
CBS tandem {Marbled electric ray (Torpedo marmorata)
[TaxId: 7788]}
Length = 160
Score = 44.3 bits (103), Expect = 8e-06
Identities = 16/134 (11%), Positives = 40/134 (29%), Gaps = 7/134 (5%)
Query: 418 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGE--DFLEGILTYGDIKRCLS 475
++V M +D +A T T + + ++ + V+ + L G + +++ L
Sbjct: 11 IQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQ 70
Query: 476 KLSSDN-----SKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELME 530
+ S + ++ ++ T L L
Sbjct: 71 RRISAYRRQPFEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFS 130
Query: 531 AKGIKQLPVIKRSR 544
G+ + V +
Sbjct: 131 LLGLDRAYVTSMGK 144
Score = 33.9 bits (76), Expect = 0.021
Identities = 6/63 (9%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
Query: 410 AEEMLLEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGD 469
E + + + + ++ +L++ + V + L G++ +
Sbjct: 95 QREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAE 153
Query: 470 IKR 472
I+
Sbjct: 154 IQA 156
>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348
{Sulfolobus tokodaii [TaxId: 111955]}
Length = 127
Score = 43.3 bits (101), Expect = 8e-06
Identities = 30/156 (19%), Positives = 52/156 (33%), Gaps = 30/156 (19%)
Query: 415 LEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 474
+EE V M + V L + + M + V+VV+G + GI+T DI + +
Sbjct: 1 MEEEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDG-NKPVGIITERDIVKAI 59
Query: 475 SKLSSDNSKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGI 534
K S +K + + D+ + A LM I
Sbjct: 60 GKGKSLETKAEEFMTASLIT---------------------IREDSPITGALALMRQFNI 98
Query: 535 KQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLREE 570
+ LPV+ K + I+ I + +
Sbjct: 99 RHLPVVD--------DKGNLKGIISIRDITRAIDDM 126
>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 140
Score = 43.2 bits (101), Expect = 1e-05
Identities = 11/123 (8%), Positives = 37/123 (30%), Gaps = 13/123 (10%)
Query: 424 MSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSK 483
+ +T + + I+ + G+ + V +++ +L + D+ + ++
Sbjct: 15 TQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLS 74
Query: 484 GDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRS 543
+ + TC + L+ + + + + V+
Sbjct: 75 LSVGEALMRRSDDFEGV-------------YTCTKNDKLSTIMDNIRKARVHRFFVVDDV 121
Query: 544 REL 546
L
Sbjct: 122 GRL 124
Score = 36.7 bits (84), Expect = 0.002
Identities = 11/59 (18%), Positives = 23/59 (38%)
Query: 416 EELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 474
E L + L +++++ + + VV+ L G+LT DI + +
Sbjct: 79 EALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYI 137
Score = 29.4 bits (65), Expect = 0.67
Identities = 5/35 (14%), Positives = 15/35 (42%)
Query: 513 LLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQ 547
+ +C T + +++ + +P+I + L
Sbjct: 19 MKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLI 53
>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 135
Score = 43.5 bits (101), Expect = 1e-05
Identities = 25/152 (16%), Positives = 52/152 (34%), Gaps = 20/152 (13%)
Query: 418 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKL 477
+ + M K+ ++ L A + + +G ++V N + +EG+LT D+ +
Sbjct: 1 MNIETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVAN--EKIEGLLTTRDLLSTVESY 58
Query: 478 SSDNSKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQL 537
D+ + T + T +T Y +D A +M + L
Sbjct: 59 CKDSCSQGDLYHISTT-PIIDYMTPNP---------VTVYNTSDEFTAINIMVTRNFGSL 108
Query: 538 PVIKRSRELQRRRKQRIVAILHYDSIWNCLRE 569
PV+ + V I+ ++
Sbjct: 109 PVVD--------INDKPVGIVTEREFLLLYKD 132
Score = 38.5 bits (88), Expect = 5e-04
Identities = 14/68 (20%), Positives = 23/68 (33%)
Query: 410 AEEMLLEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGD 469
+ + + M+ + V V T AI M + VV+ D GI+T +
Sbjct: 66 GDLYHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTERE 125
Query: 470 IKRCLSKL 477
L
Sbjct: 126 FLLLYKDL 133
>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus
thermophilus [TaxId: 274]}
Length = 144
Score = 42.9 bits (100), Expect = 2e-05
Identities = 26/154 (16%), Positives = 51/154 (33%), Gaps = 39/154 (25%)
Query: 422 RAMSKDFVKVALTVTLKEAIESMKDGQQNCVL-----VVNGEDFLEGILTYGDIKRCLSK 476
M+ ++V V +T++E + ++ + VV+ + L+G+L+ D+
Sbjct: 5 GLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA--- 61
Query: 477 LSSDNSKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQ 536
++ I + DTD LM
Sbjct: 62 --DPRTRVAEIMNPKVV---------------------YVRTDTDQEEVARLMADYDFTV 98
Query: 537 LPVIKRSRELQRRRKQRIVAILHYDSIWNCLREE 570
LPV+ + R+V I+ D + + L E
Sbjct: 99 LPVV--------DEEGRLVGIVTVDDVLDVLEAE 124
>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 120
Score = 41.4 bits (96), Expect = 3e-05
Identities = 20/145 (13%), Positives = 45/145 (31%), Gaps = 30/145 (20%)
Query: 419 KVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLS 478
+V M D + +T +L++ + + + + +VV + + T+ ++
Sbjct: 1 RVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVLEAIAEG-- 58
Query: 479 SDNSKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLP 538
+ ER L+T P + A E M + +L
Sbjct: 59 -------------------DDLAEVKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLL 99
Query: 539 VIKRSRELQRRRKQRIVAILHYDSI 563
V + I+ ++ I
Sbjct: 100 VEE---------DDEIIGVISATDI 115
>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase
subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 145
Score = 41.8 bits (97), Expect = 3e-05
Identities = 21/132 (15%), Positives = 41/132 (31%), Gaps = 15/132 (11%)
Query: 415 LEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 474
LEEL++ + V T + A+ + + + VV+ + + I + D+
Sbjct: 11 LEELQI--GTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINL- 67
Query: 475 SKLSSDNSKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGI 534
A L S+ G+L CY L + +
Sbjct: 68 ------------AAEKTYNNLDVSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEV 115
Query: 535 KQLPVIKRSREL 546
+L V+ +
Sbjct: 116 HRLVVVDEHDVV 127
Score = 40.6 bits (94), Expect = 1e-04
Identities = 14/64 (21%), Positives = 33/64 (51%)
Query: 411 EEMLLEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDI 470
+ + + L+ + +K L TL+ I + + + + ++VV+ D ++GI++ DI
Sbjct: 77 DVSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDI 136
Query: 471 KRCL 474
+ L
Sbjct: 137 LQAL 140
Score = 26.7 bits (58), Expect = 5.0
Identities = 12/73 (16%), Positives = 22/73 (30%)
Query: 508 GRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCL 567
G + T + +A + + LPV+ + + V L + +N L
Sbjct: 17 GTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNL 76
Query: 568 REEVNHRKSVYQH 580
V H
Sbjct: 77 DVSVTKALQHRSH 89
>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 123
Score = 39.9 bits (92), Expect = 1e-04
Identities = 27/144 (18%), Positives = 46/144 (31%), Gaps = 28/144 (19%)
Query: 420 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSS 479
M+ V TL A + M++ + + +D L G+LT DI
Sbjct: 3 ARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGL 62
Query: 480 DNSKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPV 539
D NT + I Y + + +ME ++++PV
Sbjct: 63 DP----------NTATAGELARDSIYY---------VDANASIQEMLNVMEEHQVRRVPV 103
Query: 540 IKRSRELQRRRKQRIVAILHYDSI 563
I + R+V I+ I
Sbjct: 104 IS---------EHRLVGIVTEADI 118
Score = 27.9 bits (61), Expect = 1.7
Identities = 10/70 (14%), Positives = 17/70 (24%)
Query: 511 RGLLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLREE 570
G+ L A + M I LP+ L R + I + +
Sbjct: 9 AGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTAT 68
Query: 571 VNHRKSVYQH 580
+
Sbjct: 69 AGELARDSIY 78
Score = 27.5 bits (60), Expect = 1.9
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 440 AIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 474
+ M++ Q V V++ E L GI+T DI R L
Sbjct: 89 MLNVMEEHQVRRVPVIS-EHRLVGIVTEADIARHL 122
>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5
{Human (Homo sapiens) [TaxId: 9606]}
Length = 169
Score = 39.9 bits (92), Expect = 2e-04
Identities = 12/84 (14%), Positives = 32/84 (38%), Gaps = 1/84 (1%)
Query: 396 LELSVVENAADSEAAEEMLLEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVV 455
+ S++ S LK+ + V ++ ++ + LV
Sbjct: 78 VSTSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVT 137
Query: 456 NGEDFLEGILTYGDIKRCLSKLSS 479
+ L GI+T D+ + ++++++
Sbjct: 138 H-NGRLLGIITKKDVLKHIAQMAN 160
Score = 34.9 bits (79), Expect = 0.010
Identities = 22/171 (12%), Positives = 49/171 (28%), Gaps = 20/171 (11%)
Query: 409 AAEEMLLEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQN--CVLVVNGEDFLEGILT 466
A + M K R V ++T+++ + + + V+V L G +
Sbjct: 5 AMDVM-----KPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVL 59
Query: 467 YGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICTRGIS----YRGRERGLLTCYPDTDL 522
D+ + S + T + + T T +
Sbjct: 60 RRDLIISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPM 119
Query: 523 AIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLREEVNH 573
I ++ G++Q V R++ I+ + + + N
Sbjct: 120 EIVVDIFRKLGLRQCLVTH---------NGRLLGIITKKDVLKHIAQMANQ 161
>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE
{Enterococcus faecalis [TaxId: 1351]}
Length = 127
Score = 38.6 bits (89), Expect = 3e-04
Identities = 20/156 (12%), Positives = 48/156 (30%), Gaps = 39/156 (25%)
Query: 420 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNC-----VLVVNGEDFLEGILTYGDIKRCL 474
M+ +FV + T++ A+ +K+ V VV+ E+ L G+++ D+
Sbjct: 3 AGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVN- 61
Query: 475 SKLSSDNSKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGI 534
+ +++ + D + +
Sbjct: 62 -------------------------DDDTLIADILNERVISVHVGDDQEDVAQTIRDYDF 96
Query: 535 KQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLREE 570
+PV ++ I+ D I + + +E
Sbjct: 97 LAVPVTD--------YDDHLLGIVTVDDIIDVIDDE 124
Score = 36.3 bits (83), Expect = 0.002
Identities = 11/52 (21%), Positives = 27/52 (51%)
Query: 419 KVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDI 470
++ +++ + V + ++ ++++D V V + +D L GI+T DI
Sbjct: 66 LIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDI 117
>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c
{Schizosaccharomyces pombe [TaxId: 4896]}
Length = 179
Score = 39.2 bits (90), Expect = 5e-04
Identities = 20/162 (12%), Positives = 51/162 (31%), Gaps = 9/162 (5%)
Query: 415 LEELKVSRAM--SKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGE-DFLEGILTYGDIK 471
+ + S + +T+ +K ++ + + + E + G+LT D
Sbjct: 17 IRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFV 76
Query: 472 RCLSKLSSDNSKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEA 531
+ +S ++++ + + + +P L A M
Sbjct: 77 NVIKY-YYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSK 135
Query: 532 KGIKQLPVIKRSRELQRRRKQRIV---AILHYDSIWNCLREE 570
+++P+I E ++ IL + I +E
Sbjct: 136 SRARRIPLIDVDGETGSEMIVSVLTQYRILKF--ISMNCKET 175
>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate
dehydrogenase CBS domains {Chinese hamster (Cricetulus
griseus) [TaxId: 10029]}
Length = 120
Score = 37.4 bits (86), Expect = 8e-04
Identities = 17/126 (13%), Positives = 37/126 (29%), Gaps = 24/126 (19%)
Query: 424 MSKDFVKVALTVTLKEAIESMKDGQQNCVLVV---NGEDFLEGILTYGDIKRCLSKLSSD 480
D V ++ +++ E+ + + L GI++ DI
Sbjct: 2 FITDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLK------ 55
Query: 481 NSKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVI 540
+ + L + R L A E+++ +LP++
Sbjct: 56 -------EEEHDRFLEEIMTKREDLV--------VAPAGITLKEANEILQRSKKGKLPIV 100
Query: 541 KRSREL 546
+ EL
Sbjct: 101 NENDEL 106
Score = 35.9 bits (82), Expect = 0.003
Identities = 18/64 (28%), Positives = 30/64 (46%)
Query: 409 AAEEMLLEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYG 468
EE L+ +D V +TLKEA E ++ ++ + +VN D L I+
Sbjct: 54 LKEEEHDRFLEEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIART 113
Query: 469 DIKR 472
D+K+
Sbjct: 114 DLKK 117
>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 141
Score = 36.9 bits (84), Expect = 0.002
Identities = 22/153 (14%), Positives = 46/153 (30%), Gaps = 22/153 (14%)
Query: 418 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKL 477
V MS + V L +A++ M + V++ ++ + GI+T + + L
Sbjct: 2 FPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQL--- 58
Query: 478 SSDNSKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQL 537
+ +V + + +T + A M K I L
Sbjct: 59 --AKAVDKLDPDYFYGKVVKDVMVTNL---------VTIDELASVNRAAAEMIVKRIGSL 107
Query: 538 PVIKRSRELQRRRKQRIVAILHYDSIWNCLREE 570
++ + I I+ + L
Sbjct: 108 LILN--------KDNTIRGIITERDLLIALHHI 132
Score = 31.5 bits (70), Expect = 0.11
Identities = 12/64 (18%), Positives = 26/64 (40%)
Query: 417 ELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 476
V M + V + ++ A M + +L++N ++ + GI+T D+ L
Sbjct: 72 GKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHH 131
Query: 477 LSSD 480
+
Sbjct: 132 ILVM 135
>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 122
Score = 36.4 bits (83), Expect = 0.002
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 418 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLV 454
++V M+++ V + L T A+E K + V
Sbjct: 1 MRVKTIMTQNPVTITLPATRNYALELFKKYKVRSFPV 37
Score = 31.0 bits (69), Expect = 0.15
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 437 LKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 474
LK+A + M + V+VV+ + GILT GDI R
Sbjct: 79 LKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRY 116
>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398
{Nitrosomonas europaea [TaxId: 915]}
Length = 127
Score = 36.3 bits (83), Expect = 0.002
Identities = 21/151 (13%), Positives = 47/151 (31%), Gaps = 32/151 (21%)
Query: 422 RAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDN 481
+ V + ++ A++ M +LV+ E + GILT D R
Sbjct: 9 QEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLV-GILTERDFSRKS------- 60
Query: 482 SKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIK 541
L+ R + + L+ ++ LPV+
Sbjct: 61 ------------YLLDKPVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD 108
Query: 542 RSRELQRRRKQRIVAILHYDSIWNCLREEVN 572
+++ +L SI + +++ ++
Sbjct: 109 ---------DGKVIGLL---SIGDLVKDAIS 127
>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072
{Pyrobaculum aerophilum [TaxId: 13773]}
Length = 131
Score = 34.9 bits (79), Expect = 0.007
Identities = 5/56 (8%), Positives = 20/56 (35%)
Query: 418 LKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRC 473
++ S + + V + T T++E + + ++ ++ + +
Sbjct: 1 IRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDIL 56
Score = 27.2 bits (59), Expect = 2.6
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 441 IESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSS 479
E M+ V+VVN L G+L+ D+ + L
Sbjct: 89 AEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERAILLE 127
>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c
{Schizosaccharomyces pombe [TaxId: 4896]}
Length = 153
Score = 31.8 bits (71), Expect = 0.11
Identities = 12/51 (23%), Positives = 21/51 (41%)
Query: 424 MSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 474
T L +++K + + + VV+ LEGIL+ DI +
Sbjct: 82 NFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYI 132
Score = 26.8 bits (58), Expect = 5.2
Identities = 12/68 (17%), Positives = 23/68 (33%)
Query: 513 LLTCYPDTDLAIAKELMEAKGIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNCLREEVN 572
L T +T + +++ K I +P++ L + V L D ++ L V
Sbjct: 14 LATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDLSVG 73
Query: 573 HRKSVYQH 580
Sbjct: 74 EALLKRPA 81
>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate
dehydrogenase CBS domains {Streptococcus pyogenes
[TaxId: 1314]}
Length = 126
Score = 31.0 bits (69), Expect = 0.15
Identities = 12/73 (16%), Positives = 28/73 (38%)
Query: 400 VVENAADSEAAEEMLLEELKVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGED 459
+V + + S+ V A+ L+ A + + + + +V+
Sbjct: 42 LVGIITNRDMRFISDYNAPISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSG 101
Query: 460 FLEGILTYGDIKR 472
L G++T DI++
Sbjct: 102 RLSGLITIKDIEK 114
Score = 30.2 bits (67), Expect = 0.24
Identities = 23/125 (18%), Positives = 40/125 (32%), Gaps = 26/125 (20%)
Query: 424 MSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDF--LEGILTYGDIKRCLSKLSSDN 481
+ D + + EA E M+ + + V +V L GI+T D+
Sbjct: 3 VIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDM----------- 51
Query: 482 SKGDSIASDVNTCLVSSICTRGISYRGRERGLLTCYPDTDLAIAKELMEAKGIKQLPVIK 541
+S T TDL A+ ++ I++LP++
Sbjct: 52 -----RFISDYNAPISEHMTSEHLVT--------AAVGTDLETAERILHEHRIEKLPLVD 98
Query: 542 RSREL 546
S L
Sbjct: 99 NSGRL 103
>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 386
Score = 28.9 bits (64), Expect = 1.8
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 533 GIKQLPVIKRSRELQRRRKQRIVAILHYDSIWNC 566
I Q P + +R++ R A+LH
Sbjct: 229 AIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPAL 262
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 28.3 bits (62), Expect = 2.3
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Query: 522 LAIAKELMEAKGIKQL-PVIKRSRELQRRRKQRIVAILHYDSIWNCLREEVNHRKSV-YQ 579
L A EL+E +G+ L IK+ E + + + D + K +
Sbjct: 82 LHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLD 141
Query: 580 HSKDKNLEEI 589
H K L+EI
Sbjct: 142 HPKMDKLKEI 151
>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus
subtilis [TaxId: 1423]}
Length = 132
Score = 27.7 bits (60), Expect = 2.4
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 448 QQNCVLVVNGEDFLEGILTYGDIKRCLSK 476
V V N E EGI T + + L+K
Sbjct: 102 NNGFVCVENDEQVFEGIFTRRVVLKELNK 130
>d1vlua_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 436
Score = 28.3 bits (62), Expect = 2.9
Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 18/85 (21%)
Query: 367 RTLARGYSSLSPMEDKNEVLWRRTDGADELELS----VVENAADSEAAEEMLLEELKVSR 422
R ++S E ++++L D L+ + N D A+E L + + R
Sbjct: 13 RKAGNILKTISN-EGRSDIL---YKIHDALKANAHAIEEANKIDLAVAKETGLADSLLKR 68
Query: 423 AMSKDFVKVALTVTLKEAIESMKDG 447
L + + E M G
Sbjct: 69 ----------LDLFKGDKFEVMLQG 83
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.385
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,069,410
Number of extensions: 94082
Number of successful extensions: 309
Number of sequences better than 10.0: 1
Number of HSP's gapped: 288
Number of HSP's successfully gapped: 60
Length of query: 593
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 503
Effective length of database: 1,171,896
Effective search space: 589463688
Effective search space used: 589463688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.1 bits)