BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007695
         (592 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|302142507|emb|CBI19710.3| unnamed protein product [Vitis vinifera]
          Length = 747

 Score =  895 bits (2312), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/594 (74%), Positives = 523/594 (88%), Gaps = 2/594 (0%)

Query: 1   MLLMIVGKVVSEMEKGGLERMIESASASPSQDFSEDLWRTVWEVSNLVLEDMEKARKKEK 60
           MLL+IV KVVSEMEKGGLE+M+ +A A+PSQDFSEDLW+TVWEVSNLVL+DM+KAR KEK
Sbjct: 127 MLLIIVRKVVSEMEKGGLEQMLSAAVAAPSQDFSEDLWKTVWEVSNLVLDDMKKARNKEK 186

Query: 61  MKGFLQSDKVKEMSRFAGEIGIRGDMLRELRFKWAREEMEESEFYEGLERLRKEANAQEM 120
           MKGFLQS++VKEMSRFAGEIGIRGDMLRELRFKWARE+MEESEFY+ L+ LR+EA A+E 
Sbjct: 187 MKGFLQSEEVKEMSRFAGEIGIRGDMLRELRFKWAREKMEESEFYQSLDHLREEAQAEEG 246

Query: 121 GEKA--EGKAAAECAEVEEKPKVITLPKRHGKIKYKIYGLDLSDPKWTEVAEKIHERGEM 178
            E    E     +  E E+K KV++LPKRHGKI+Y+IYGLDLSDPKWTEVA+K+HER E+
Sbjct: 247 EEAVGNEEVIGDDLVEDEKKEKVVSLPKRHGKIRYEIYGLDLSDPKWTEVADKVHEREEI 306

Query: 179 ILPEEPKPITGKCKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQ 238
           I P+EPKPI+GKCKLIT+KIL++++E+DPSPLL EW ELLQPSRIDWI LLDRL+E N+ 
Sbjct: 307 IWPQEPKPISGKCKLITEKILNMKEEDDPSPLLDEWAELLQPSRIDWITLLDRLKENNSH 366

Query: 239 LYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVL 298
           LYFKVAELVLS++SFQTN+RDYSKLID HAKEN +EDAERILKKMNEN I+PDI+TSTVL
Sbjct: 367 LYFKVAELVLSKKSFQTNIRDYSKLIDVHAKENRVEDAERILKKMNENDILPDILTSTVL 426

Query: 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
           VHMYSKAGNL+RAKEAFE LRS GFQPD +VYNSMIMAYVNAGQPKLG SL+  M    I
Sbjct: 427 VHMYSKAGNLERAKEAFEGLRSQGFQPDTRVYNSMIMAYVNAGQPKLGESLMREMEARDI 486

Query: 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418
           + ++EIY++LL+SFAQ GD+ GA +I+  M+   FQP+LESCTLLVEAYGQAGDPDQAR+
Sbjct: 487 KPTKEIYMSLLQSFAQRGDIGGAQRISTTMQFAGFQPSLESCTLLVEAYGQAGDPDQARN 546

Query: 419 NFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLG 478
           +FDYMI++GH+PDDRCTASMIAAY K NLLDKALNLLL+LEKDGFEPG ATY VLVDWLG
Sbjct: 547 SFDYMIKVGHRPDDRCTASMIAAYEKGNLLDKALNLLLQLEKDGFEPGVATYVVLVDWLG 606

Query: 479 RLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
           ++QL++EAEQLLGKI+E GEAPP K  VSLCDMY+RAG+EKKALQALG +EAKKEQ+ P+
Sbjct: 607 KMQLVDEAEQLLGKIAEQGEAPPLKFHVSLCDMYSRAGVEKKALQALGVVEAKKEQLNPE 666

Query: 539 DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQPTR 592
           DFERII GL+AGGF+QDA+R+HG+ME QGF ASE+LK+ L+SSQ   R+R   R
Sbjct: 667 DFERIIKGLIAGGFVQDARRIHGVMETQGFTASEQLKIILMSSQAVGRERPTLR 720


>gi|225458257|ref|XP_002281331.1| PREDICTED: protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial-like
           [Vitis vinifera]
          Length = 720

 Score =  894 bits (2310), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/594 (74%), Positives = 523/594 (88%), Gaps = 2/594 (0%)

Query: 1   MLLMIVGKVVSEMEKGGLERMIESASASPSQDFSEDLWRTVWEVSNLVLEDMEKARKKEK 60
           MLL+IV KVVSEMEKGGLE+M+ +A A+PSQDFSEDLW+TVWEVSNLVL+DM+KAR KEK
Sbjct: 127 MLLIIVRKVVSEMEKGGLEQMLSAAVAAPSQDFSEDLWKTVWEVSNLVLDDMKKARNKEK 186

Query: 61  MKGFLQSDKVKEMSRFAGEIGIRGDMLRELRFKWAREEMEESEFYEGLERLRKEANAQEM 120
           MKGFLQS++VKEMSRFAGEIGIRGDMLRELRFKWARE+MEESEFY+ L+ LR+EA A+E 
Sbjct: 187 MKGFLQSEEVKEMSRFAGEIGIRGDMLRELRFKWAREKMEESEFYQSLDHLREEAQAEEG 246

Query: 121 GEKA--EGKAAAECAEVEEKPKVITLPKRHGKIKYKIYGLDLSDPKWTEVAEKIHERGEM 178
            E    E     +  E E+K KV++LPKRHGKI+Y+IYGLDLSDPKWTEVA+K+HER E+
Sbjct: 247 EEAVGNEEVIGDDLVEDEKKEKVVSLPKRHGKIRYEIYGLDLSDPKWTEVADKVHEREEI 306

Query: 179 ILPEEPKPITGKCKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQ 238
           I P+EPKPI+GKCKLIT+KIL++++E+DPSPLL EW ELLQPSRIDWI LLDRL+E N+ 
Sbjct: 307 IWPQEPKPISGKCKLITEKILNMKEEDDPSPLLDEWAELLQPSRIDWITLLDRLKENNSH 366

Query: 239 LYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVL 298
           LYFKVAELVLS++SFQTN+RDYSKLID HAKEN +EDAERILKKMNEN I+PDI+TSTVL
Sbjct: 367 LYFKVAELVLSKKSFQTNIRDYSKLIDVHAKENRVEDAERILKKMNENDILPDILTSTVL 426

Query: 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
           VHMYSKAGNL+RAKEAFE LRS GFQPD +VYNSMIMAYVNAGQPKLG SL+  M    I
Sbjct: 427 VHMYSKAGNLERAKEAFEGLRSQGFQPDTRVYNSMIMAYVNAGQPKLGESLMREMEARDI 486

Query: 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418
           + ++EIY++LL+SFAQ GD+ GA +I+  M+   FQP+LESCTLLVEAYGQAGDPDQAR+
Sbjct: 487 KPTKEIYMSLLQSFAQRGDIGGAQRISTTMQFAGFQPSLESCTLLVEAYGQAGDPDQARN 546

Query: 419 NFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLG 478
           +FDYMI++GH+PDDRCTASMIAAY K NLLDKALNLLL+LEKDGFEPG ATY VLVDWLG
Sbjct: 547 SFDYMIKVGHRPDDRCTASMIAAYEKGNLLDKALNLLLQLEKDGFEPGVATYVVLVDWLG 606

Query: 479 RLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
           ++QL++EAEQLLGKI+E GEAPP K  VSLCDMY+RAG+EKKALQALG +EAKKEQ+ P+
Sbjct: 607 KMQLVDEAEQLLGKIAEQGEAPPLKFHVSLCDMYSRAGVEKKALQALGVVEAKKEQLNPE 666

Query: 539 DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQPTR 592
           DFERII GL+AGGF+QDA+R+HG+ME QGF ASE+LK+ L+SSQ   R+R   R
Sbjct: 667 DFERIIKGLIAGGFVQDARRIHGVMETQGFTASEQLKIILMSSQAVGRERPTLR 720


>gi|449470136|ref|XP_004152774.1| PREDICTED: protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial-like
           [Cucumis sativus]
          Length = 717

 Score =  816 bits (2109), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/590 (70%), Positives = 496/590 (84%), Gaps = 3/590 (0%)

Query: 1   MLLMIVGKVVSEMEKGGLERMIESASASPSQDFSEDLWRTVWEVSNLVLEDMEKARKKEK 60
           MLLMIV KVVSEMEKG  E+ +++++ +P  D SEDLW+TV EVSN+VL+DM+KA KKEK
Sbjct: 131 MLLMIVEKVVSEMEKGRFEQTLKASTDNPDWDLSEDLWKTVTEVSNMVLDDMKKATKKEK 190

Query: 61  MKGFLQSDKVKEMSRFAGEIGIRGDMLRELRFKWAREEMEESEFYEGLERLRKEANAQEM 120
           MKGFL S +V+EM RFAGE+GIRGDMLRE RFKWARE+MEESEFYE LE+LRKEA  QE 
Sbjct: 191 MKGFLLSREVQEMCRFAGEVGIRGDMLREFRFKWAREKMEESEFYESLEQLRKEARTQE- 249

Query: 121 GEKAEGKAAAECAEVEEKPKVITLPKRHGKIKYKIYGLDLSDPKWTEVAEKIHERGEMIL 180
            E  +  + AE A  E K + ++LPKR GK+KYKIYGLDLSDPKW+E+A+K+H   ++IL
Sbjct: 250 -ENKDSASGAEAAS-EVKSEAVSLPKRRGKLKYKIYGLDLSDPKWSELADKLHVAEKLIL 307

Query: 181 PEEPKPITGKCKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLY 240
           P+EPKPI+G CKL+T+KIL L + +DPSPLLAEWKELLQP+RIDWI LLDRL E+N  LY
Sbjct: 308 PQEPKPISGMCKLVTEKILLLNENDDPSPLLAEWKELLQPTRIDWITLLDRLNEKNRFLY 367

Query: 241 FKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
           FKVAEL+LSEESFQTN+RDYSKLI+ +AKEN LEDAERIL KMNE GI PDI+T+  L+H
Sbjct: 368 FKVAELLLSEESFQTNIRDYSKLIEVYAKENRLEDAERILVKMNEKGIAPDILTTIYLIH 427

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
           MYSKAGNLD AK+AF+SLRSHGFQPD+KVYNSMIMAYVNAGQPKLG SL+  M    I+ 
Sbjct: 428 MYSKAGNLDSAKKAFDSLRSHGFQPDEKVYNSMIMAYVNAGQPKLGESLMRDMEARDIKP 487

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
           S++IY+ALLRSF+QCG V GAG+I   M+     P LESCTLLVEAYGQAGDPD+AR+NF
Sbjct: 488 SQDIYMALLRSFSQCGYVSGAGRIAATMQFAGISPNLESCTLLVEAYGQAGDPDKARNNF 547

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
           DYMI+LGH PDDRCTASMIAAY KKNLLDKAL+LLL+LEKDGFEPG ATY VLVDWLG+L
Sbjct: 548 DYMIKLGHAPDDRCTASMIAAYEKKNLLDKALDLLLQLEKDGFEPGLATYAVLVDWLGKL 607

Query: 481 QLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF 540
           QL+ EAEQ+L KI   G   P K+++SLCDMY+RAGIEKKALQAL  LEAKK+++G DDF
Sbjct: 608 QLVEEAEQVLAKIGAQGHYLPIKVRISLCDMYSRAGIEKKALQALKILEAKKQELGHDDF 667

Query: 541 ERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQP 590
           ERIINGL+AGGFLQDA+R+ G+MEAQGF AS+ L++AL +SQ    +R P
Sbjct: 668 ERIINGLVAGGFLQDAKRMEGVMEAQGFIASQPLQMALRTSQALRGKRLP 717


>gi|255538676|ref|XP_002510403.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551104|gb|EEF52590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 719

 Score =  813 bits (2100), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/603 (69%), Positives = 491/603 (81%), Gaps = 20/603 (3%)

Query: 1   MLLMIVGKVVSEMEKGGLERMIESASASPSQDFSEDLWRTVWEVSNLVLEDMEKARKKEK 60
           MLL+IVGKVVSEMEKG  E+M+ ++ A+PSQD SEDLWRTVWEVSNLVLEDMEK RKKEK
Sbjct: 125 MLLIIVGKVVSEMEKGSPEQMLGASGAAPSQDLSEDLWRTVWEVSNLVLEDMEKERKKEK 184

Query: 61  MKGFLQSDKVKEMSRFAGEIGIRGDMLRELRFKWAREEMEESEFYEGLERLRKEA----- 115
           MKGFLQS++VKEM RFAGEIGIRGDMLRELRFKWA E+MEESEFY  LE+LR+E      
Sbjct: 185 MKGFLQSEEVKEMCRFAGEIGIRGDMLRELRFKWAHEKMEESEFYASLEKLREEERTQEK 244

Query: 116 ------NAQEMGEKAEGKAAAECAEVEEKPKVITLPKRHGKIKYKIYGLDLSDPKWTEVA 169
                 N + MGE        E    EEK KV ++PKRHGKI+YKIYGLDLSDPKW EVA
Sbjct: 245 EEADAKNYEPMGE--------EAVMGEEKLKVKSIPKRHGKIRYKIYGLDLSDPKWVEVA 296

Query: 170 EKIHERGEMILPEEPKPITGKCKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLL 229
           +KIHE G +I P+EPKPI GK KL+T+KILSL++E+DPS LLAEW ELLQP+R+DW+ LL
Sbjct: 297 DKIHETGAIIWPQEPKPINGKSKLVTEKILSLKEEDDPSQLLAEWAELLQPNRVDWLTLL 356

Query: 230 DRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIV 289
           D+L+E+N Q +FKVAE +L+E+SFQ N+RDYS LIDAHA +N +ED ERIL+KMNENGI 
Sbjct: 357 DKLKEKNMQTFFKVAEHLLNEKSFQPNIRDYSVLIDAHATKNQIEDVERILEKMNENGIF 416

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL 349
           PDI  ST LVHMYSKAGN DR KEAF  LRSHGFQPD KVYNSMIMA VNAGQPKLG S 
Sbjct: 417 PDISASTALVHMYSKAGNFDRTKEAFGRLRSHGFQPDIKVYNSMIMASVNAGQPKLGDSF 476

Query: 350 VDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409
           V  M    I+ +EE+Y ALLRSFAQ GDV  A +I   M+   FQP LE  TLLVEA+G+
Sbjct: 477 VREMEARDIKPTEEMYFALLRSFAQLGDVSEAHKIATAMQFAGFQPNLEFYTLLVEAHGR 536

Query: 410 AGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPAT 469
           AG PDQAR NFD MI++G +PDDR  AS+IAAY KKNLLD+AL++LL+L+KDGFEPG AT
Sbjct: 537 AGQPDQARRNFDQMIKVGFRPDDRVAASLIAAYEKKNLLDEALDILLQLKKDGFEPGLAT 596

Query: 470 YTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLE 529
            TVLVDWL +LQL++EAEQLLGKI+E GEAPPFKIQVSLCDMYAR G EKKALQ LG LE
Sbjct: 597 CTVLVDWLAKLQLVDEAEQLLGKIAEQGEAPPFKIQVSLCDMYARVGNEKKALQVLGVLE 656

Query: 530 AKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQ 589
           AKKEQ+G +DFER+I+GL+AG F+Q+A RVH LMEAQG++ASE+L VAL +SQ F+ +R 
Sbjct: 657 AKKEQLGSNDFERVIHGLIAGRFVQEATRVHALMEAQGYSASEQLVVALRASQAFSPKR- 715

Query: 590 PTR 592
           PT+
Sbjct: 716 PTK 718


>gi|449520042|ref|XP_004167043.1| PREDICTED: LOW QUALITY PROTEIN: protein NUCLEAR FUSION DEFECTIVE 5,
           mitochondrial-like [Cucumis sativus]
          Length = 717

 Score =  812 bits (2098), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/590 (70%), Positives = 494/590 (83%), Gaps = 3/590 (0%)

Query: 1   MLLMIVGKVVSEMEKGGLERMIESASASPSQDFSEDLWRTVWEVSNLVLEDMEKARKKEK 60
           MLLMIV KVVSEMEKG  E+ +++++ +P  D SEDLW+TV EVSN+VL+DM+KA KKEK
Sbjct: 131 MLLMIVEKVVSEMEKGRFEQTLKASTDNPDWDLSEDLWKTVTEVSNMVLDDMKKATKKEK 190

Query: 61  MKGFLQSDKVKEMSRFAGEIGIRGDMLRELRFKWAREEMEESEFYEGLERLRKEANAQEM 120
           MKGFL S +V+EM RFAGE+GIRGDMLRE RFKWARE+MEESEFYE LE+LRKEA  QE 
Sbjct: 191 MKGFLLSREVQEMCRFAGEVGIRGDMLREFRFKWAREKMEESEFYESLEQLRKEARTQE- 249

Query: 121 GEKAEGKAAAECAEVEEKPKVITLPKRHGKIKYKIYGLDLSDPKWTEVAEKIHERGEMIL 180
            E  +  + AE A  E K + ++LPKR GK+KYKIYGLDLSDPKW+E+A+K+H   ++IL
Sbjct: 250 -ENKDSASGAEAAS-EVKSEAVSLPKRRGKLKYKIYGLDLSDPKWSELADKLHVAEKLIL 307

Query: 181 PEEPKPITGKCKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLY 240
           P+EPKPI+G CKL+T+KIL L + +DPSPLLAEWKELLQP+RIDWI LLDRL E+N  LY
Sbjct: 308 PQEPKPISGMCKLVTEKILLLNENDDPSPLLAEWKELLQPTRIDWITLLDRLNEKNRFLY 367

Query: 241 FKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
           FKVAEL+LSEESFQTN+RDYSKLI+ +AKEN LEDAERIL KMNE GI PDI+T+  L+H
Sbjct: 368 FKVAELLLSEESFQTNIRDYSKLIEVYAKENRLEDAERILVKMNEKGIAPDILTTIYLIH 427

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
           MYSKAGNLD AK+AF+SLRSHGFQPD+KVYNSMIMAYVNAGQPKLG SL+  M    I+ 
Sbjct: 428 MYSKAGNLDSAKKAFDSLRSHGFQPDEKVYNSMIMAYVNAGQPKLGESLMRDMEARDIKP 487

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
           S++IY+ALLRSF+QCG V GAG+I   M+     P LESCTLLV AYGQAGDPD+AR+NF
Sbjct: 488 SQDIYMALLRSFSQCGYVSGAGRIAATMQFAGISPNLESCTLLVXAYGQAGDPDKARNNF 547

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
           DYMI+LGH PDDRCTASMIAAY KKNLLDKAL+LLL+LEKDGFEPG ATY VLVDWLG+L
Sbjct: 548 DYMIKLGHAPDDRCTASMIAAYEKKNLLDKALDLLLQLEKDGFEPGLATYAVLVDWLGKL 607

Query: 481 QLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF 540
           QL+ EAEQ+L KI   G   P K+++SLCDMY+RAGIEKKALQAL  LEAK +++G DDF
Sbjct: 608 QLVEEAEQVLAKIGAQGHYLPIKVRISLCDMYSRAGIEKKALQALKILEAKXQELGHDDF 667

Query: 541 ERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQP 590
           ERIINGL+AGGFLQDA+R+ G+MEAQGF AS+ L++AL +SQ    +R P
Sbjct: 668 ERIINGLVAGGFLQDAKRMEGVMEAQGFIASQPLQMALRTSQALRGKRLP 717


>gi|356553875|ref|XP_003545276.1| PREDICTED: pentatricopeptide repeat-containing protein At3g07290,
           mitochondrial-like [Glycine max]
          Length = 691

 Score =  702 bits (1811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/589 (64%), Positives = 458/589 (77%), Gaps = 24/589 (4%)

Query: 1   MLLMIVGKVVSEMEKGGLERMIESASASPSQDFSEDLWRTVWEVSNLVLEDMEKARKKEK 60
           ML  IV + VSEMEKGG+E M    S+  S DFSEDLWRTVWEVSNLVLEDM+K  KKEK
Sbjct: 105 MLFAIVERFVSEMEKGGIETM----SSFRSADFSEDLWRTVWEVSNLVLEDMDKEIKKEK 160

Query: 61  MKGFLQSDKVKEMSRFAGEIGIRGDMLRELRFKWAREEMEESEFYEGLERLRKEANAQEM 120
           MKGFLQ ++VKEM RFAGE+GIRGD+LRELRFKWARE++EE EFYEGLERLRKE      
Sbjct: 161 MKGFLQCEEVKEMCRFAGEVGIRGDLLRELRFKWAREKLEEHEFYEGLERLRKET----- 215

Query: 121 GEKAEGKAAAECAEVEEKPKVITLPKRHGKIKYKIYGLDLSDPKWTEVAEKIHERGEMIL 180
             ++EG A     E +EK  V+ LPKR GKI+YKIYGLDLSDPKW +VA++IHE  ++  
Sbjct: 216 --QSEGNAIDVPKEEKEK-VVVGLPKRRGKIRYKIYGLDLSDPKWAQVADRIHEAEQVFW 272

Query: 181 PEEPKPITGKCKLITDKIL-------SLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLR 233
           P+EPKPITGK K++T KIL         E+E+    LLAEW EL+QPSR++W++LLD+L+
Sbjct: 273 PQEPKPITGKAKIVTTKILLSKEEEEEEEEEDGLQSLLAEWVELVQPSRVEWMDLLDKLK 332

Query: 234 EQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIV 293
           E N  LYFKVAE+VL+E+SFQT+V DYS+LID +AKEN  +D ER+LKK+NENG+  D  
Sbjct: 333 EHNPGLYFKVAEMVLTEDSFQTHVSDYSRLIDIYAKENRFDDVERMLKKLNENGLQVDAS 392

Query: 294 TSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMM 353
            ++ LV MY K G+L  AKEAFE L S GFQPD  VYNSMI A VN GQPKLG  L+  M
Sbjct: 393 IASTLVLMYCKRGDLAHAKEAFEVLTSLGFQPDAHVYNSMITALVNNGQPKLGEKLMRDM 452

Query: 354 ITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP--TLESCTLLVEAYGQA- 410
               I  +++IY+ALLRSF+Q GD  GA +I+N M+    Q    +E+ TLL+EA   A 
Sbjct: 453 DDRHIPITKDIYMALLRSFSQLGDAVGAERISNTMQFAGIQQGMDMETSTLLIEASALAV 512

Query: 411 -GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPAT 469
             +PDQARS+FDYMI+LGHKPDDRCTASMI+AY KKN LD ALNLLLELEKDGFEPG AT
Sbjct: 513 PCNPDQARSHFDYMIKLGHKPDDRCTASMISAYEKKNYLDNALNLLLELEKDGFEPGVAT 572

Query: 470 YTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLE 529
           Y+VLVDWLG+LQL++EAEQLLGKI+ LGEAPPFK+QVSLCDMYARAG EKKALQ+LG LE
Sbjct: 573 YSVLVDWLGKLQLVDEAEQLLGKIALLGEAPPFKLQVSLCDMYARAGNEKKALQSLGVLE 632

Query: 530 AKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVAL 578
           A+K+++G  +FERI++GL+ GGF +DAQR+  +MEAQGF AS R+K  L
Sbjct: 633 ARKDELGQAEFERILSGLIDGGFQKDAQRISQIMEAQGFDAS-RVKFKL 680


>gi|356564280|ref|XP_003550383.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like isoform 1 [Glycine max]
 gi|356564282|ref|XP_003550384.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like isoform 2 [Glycine max]
          Length = 693

 Score =  689 bits (1778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/582 (63%), Positives = 451/582 (77%), Gaps = 12/582 (2%)

Query: 1   MLLMIVGKVVSEMEKGGLERMIESASASPSQDFSEDLWRTVWEVSNLVLEDMEKARKKEK 60
           ML+ IV  VVSEMEKG +     ++S   S DFSEDLWRTVWEVS+LVLEDM K  KKEK
Sbjct: 109 MLVAIVEMVVSEMEKGSIG---TTSSLFCSADFSEDLWRTVWEVSSLVLEDMNKEIKKEK 165

Query: 61  MKGFLQSDKVKEMSRFAGEIGIRGDMLRELRFKWAREEMEESEFYEGLERLRKEANAQEM 120
           MK FLQ ++VKEM RFAGE+GIRGD+LRELRFKWARE+MEE EFYEGLERLR+EA ++  
Sbjct: 166 MKSFLQCEEVKEMCRFAGEVGIRGDLLRELRFKWAREKMEEHEFYEGLERLREEARSEGN 225

Query: 121 GEKAEGKAAAECAEVEEKPKVITLPKRHGKIKYKIYGLDLSDPKWTEVAEKIHERGEMIL 180
           G         E  E  ++  V+ LPKR G I+YKIYGLDLSD KW +VA++IHE  ++  
Sbjct: 226 GIGV----ITEKKEKVKEKVVVGLPKRRGNIRYKIYGLDLSDSKWAQVADRIHEAEQVFW 281

Query: 181 PEEPKPITGKCKLITDKILSLEKEEDPS--PLLAEWKELLQPSRIDWINLLDRLREQNTQ 238
           P+EPKPITGK K++  KILS ++E+D     LLAEW EL+QPSR++W++LLD+L+EQN  
Sbjct: 282 PQEPKPITGKAKIVIAKILSSKEEDDDGLQSLLAEWVELVQPSRVEWMDLLDKLKEQNHG 341

Query: 239 LYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVL 298
           LY KVAE+VL+E+SFQTNV DYS+LID +AKEN  +D ER+LKK+NENG+  D   ++ L
Sbjct: 342 LYLKVAEMVLAEDSFQTNVSDYSRLIDIYAKENRFDDVERMLKKLNENGLQVDASIASTL 401

Query: 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
           V MY K GNL RA EAF  L S GFQPD  VYNSMIM +VN GQPKLG  L+  M    I
Sbjct: 402 VLMYCKGGNLARATEAFGVLTSLGFQPDAHVYNSMIMTFVNNGQPKLGEKLMRDMDDRLI 461

Query: 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL--ESCTLLVEAYGQAGDPDQA 416
             +++IY+ALLRS++Q GDV  A +I+  M+    Q +   E+CTLLVEAY  A +PDQA
Sbjct: 462 TITKDIYMALLRSYSQLGDVASAERISTTMQFAGIQQSTDKETCTLLVEAYALASNPDQA 521

Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476
           RS+FD MI+ GH+PDDRCTASMI AY KKN LD ALNLLLELEKDGFEPG ATY+VLVDW
Sbjct: 522 RSHFDCMIKSGHQPDDRCTASMILAYEKKNDLDNALNLLLELEKDGFEPGVATYSVLVDW 581

Query: 477 LGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG 536
           LG+LQL++EAEQLLGKI+ LGEAPPFK+QVSLCDMYARAG EKKALQ+LG LEA+K+++G
Sbjct: 582 LGKLQLVDEAEQLLGKIALLGEAPPFKLQVSLCDMYARAGNEKKALQSLGVLEARKDELG 641

Query: 537 PDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVAL 578
             +FERII+GL+ GGF +DAQR+  +MEAQGF AS R+K  L
Sbjct: 642 QAEFERIISGLIDGGFQKDAQRICQIMEAQGFDAS-RVKFKL 682


>gi|186478661|ref|NP_564088.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|8778424|gb|AAF79432.1|AC025808_14 F18O14.27 [Arabidopsis thaliana]
 gi|332191742|gb|AEE29863.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 725

 Score =  665 bits (1716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/583 (58%), Positives = 449/583 (77%), Gaps = 4/583 (0%)

Query: 1   MLLMIVGKVVSEMEKGGLERMIESASASPSQDFSEDLWRTVWEVSNLVLEDMEKARKKEK 60
           MLL+IV KVV E+E+GG  + + SA  SPS +FS+DLW T+WEVSN VL+DMEK RKKEK
Sbjct: 127 MLLLIVEKVVEEIERGGFNK-VGSAPPSPSSEFSDDLWATIWEVSNTVLKDMEKERKKEK 185

Query: 61  MKGFLQSDKVKEMSRFAGEIGIRGDMLRELRFKWAREEMEESEFYEGLERLRKEANAQEM 120
           MK ++QS +V EM RFAGEIGIRGD+LRELRFKWARE+M+++EFYE LE+ R   N+   
Sbjct: 186 MKQYVQSPEVMEMCRFAGEIGIRGDLLRELRFKWAREKMDDAEFYESLEQQRDLDNSIRE 245

Query: 121 GEKAEGKAAAE--CAEVEEKPKVITLPKRHGKIKYKIYGLDLSDPKWTEVAEKIHERGEM 178
            E  +G+   E      E + + I+LPKR GK+KYKIYGL+LSDPKW E+A+KIHE  E 
Sbjct: 246 SETVDGEVEEEGFVPSDEVESRSISLPKRKGKLKYKIYGLELSDPKWVEMADKIHEAEEE 305

Query: 179 ILPEEPKPITGKCKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQ 238
               EPKP+TGKCKL+ +K+ SL++ +DPS LLAEW ELL+P+R+DWI L+++LRE NT 
Sbjct: 306 ADWREPKPVTGKCKLVMEKLESLQEGDDPSGLLAEWAELLEPNRVDWIALINQLREGNTH 365

Query: 239 LYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVL 298
            Y KVAE VL E+SF  ++ DYSKLI  HAKEN +ED ERILKKM++NGI PDI+T+T L
Sbjct: 366 AYLKVAEGVLDEKSFNASISDYSKLIHIHAKENHIEDVERILKKMSQNGIFPDILTATAL 425

Query: 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
           VHMYSK+GN +RA EAFE+L+S+G +PD+K+Y +MI+ YVNAG+PKLG  L+  M    +
Sbjct: 426 VHMYSKSGNFERATEAFENLKSYGLRPDEKIYEAMILGYVNAGKPKLGERLMKEMQAKEL 485

Query: 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP-TLESCTLLVEAYGQAGDPDQAR 417
           + SEE+Y+ALLR++AQ GD  GA  I++ M+     P + E+ +L VEAYG+AG  D+A+
Sbjct: 486 KASEEVYMALLRAYAQMGDANGAAGISSSMQYASDGPLSFEAYSLFVEAYGKAGQVDKAK 545

Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
           SNFD M +LGHKPDD+C A+++ AY  +N LDKAL LLL+LEKDG E G  TYTVLVDW+
Sbjct: 546 SNFDEMRKLGHKPDDKCIANLVRAYKGENSLDKALRLLLQLEKDGIEIGVITYTVLVDWM 605

Query: 478 GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP 537
             L LI EAEQLL KIS+LGEAPPF++QVSLC MY+    EKK LQALG LEAK++QMGP
Sbjct: 606 ANLGLIEEAEQLLVKISQLGEAPPFELQVSLCCMYSGVRNEKKTLQALGVLEAKRDQMGP 665

Query: 538 DDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
           ++F+++I+ L  GGF +DA+R++  MEA+ F  S+RL++ +++
Sbjct: 666 NEFDKVISALKRGGFEKDARRMYKYMEARKFLPSQRLQMDMVA 708


>gi|297844926|ref|XP_002890344.1| F18O14.27 [Arabidopsis lyrata subsp. lyrata]
 gi|297336186|gb|EFH66603.1| F18O14.27 [Arabidopsis lyrata subsp. lyrata]
          Length = 724

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/583 (59%), Positives = 445/583 (76%), Gaps = 4/583 (0%)

Query: 1   MLLMIVGKVVSEMEKGGLERMIESASASPSQDFSEDLWRTVWEVSNLVLEDMEKARKKEK 60
           MLL+IV KVV E+E+GG  + + SA  SPS +FS+DLW T+WEVSN VL+DMEK RKKEK
Sbjct: 129 MLLLIVEKVVEEIERGGFNK-VGSAPPSPSSEFSDDLWATIWEVSNTVLKDMEKERKKEK 187

Query: 61  MKGFLQSDKVKEMSRFAGEIGIRGDMLRELRFKWAREEMEESEFYEGLERLRKEANAQEM 120
           MK ++QS +V EM RFAGEIGIRGD+LRELRFKWARE+ME++EFYE LE+ R   NA   
Sbjct: 188 MKQYIQSPEVMEMCRFAGEIGIRGDLLRELRFKWAREKMEDAEFYESLEQQRDLDNAIRD 247

Query: 121 GEKAEGKAAAE--CAEVEEKPKVITLPKRHGKIKYKIYGLDLSDPKWTEVAEKIHERGEM 178
            E  +G+   E      E + + I+LPKR GK KYK YGL+LSDPKW E+A++IHE  E 
Sbjct: 248 SETVDGEVEEEGFVPSDEIESRSISLPKRKGKFKYKSYGLELSDPKWVEMADRIHEAEEE 307

Query: 179 ILPEEPKPITGKCKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQ 238
               EPKP+TGKCKL+ +K+ SL++ +DPS LLAEW ELL+P+R+DWI LL++LRE NT 
Sbjct: 308 ADWREPKPVTGKCKLVMEKLESLQEGDDPSGLLAEWAELLEPNRVDWIALLNQLREGNTN 367

Query: 239 LYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVL 298
            Y +VAE VL E+SF  ++ DYSKLI  HAKEN +ED ERILKKM++NGI PDI+T+T L
Sbjct: 368 AYLQVAERVLDEKSFNASISDYSKLIHIHAKENHIEDVERILKKMSQNGIFPDILTATSL 427

Query: 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
           VHMYSK+GNL+RA EAFE+L+S+G + D+K+Y +MIM YVNAG+PKLG  LV  M    +
Sbjct: 428 VHMYSKSGNLERATEAFENLKSYGLRLDEKIYEAMIMGYVNAGKPKLGERLVKEMQAKEL 487

Query: 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP-TLESCTLLVEAYGQAGDPDQAR 417
           + SEE+Y+ALLR++AQ GD  GA  I++ M      P + E+ +L VEAYG+AG  D+A+
Sbjct: 488 KASEEVYMALLRAYAQMGDANGAAGISSSMLYASNDPLSFEAYSLFVEAYGKAGQVDKAK 547

Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
           SNFD M +LGHKPDD+C A+++ AY  +N LDKAL LLL+LEKDG E G  TYTVLVDW+
Sbjct: 548 SNFDEMRKLGHKPDDKCIANLVRAYKGENSLDKALRLLLQLEKDGIEIGVITYTVLVDWM 607

Query: 478 GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP 537
             L LI EAEQLL KIS+LGEAPPF++QVSLC MY+    EKK LQALG LEAK++QMGP
Sbjct: 608 ANLGLIEEAEQLLVKISQLGEAPPFELQVSLCCMYSSVRNEKKTLQALGVLEAKRDQMGP 667

Query: 538 DDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
           ++F+++I  L  GGF +DA+R++  MEA+ F  S+RL++ +++
Sbjct: 668 NEFDKVITALKKGGFEKDARRMYKYMEARKFLPSQRLQMDMVA 710


>gi|357142830|ref|XP_003572708.1| PREDICTED: uncharacterized protein LOC100834819 [Brachypodium
           distachyon]
          Length = 780

 Score =  516 bits (1328), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 275/548 (50%), Positives = 377/548 (68%), Gaps = 14/548 (2%)

Query: 32  DFSEDLWRTVWEVSNLVLEDMEKARKKEKMKGFLQSDKVKEMSRFAGEIGIRGDMLRELR 91
           D SEDLW TVWEVS  V + M + + +  ++ +L SD VKEM+RFA ++GIRG MLRELR
Sbjct: 228 DLSEDLWATVWEVSASVRDAMRRDQVRADLRNYLHSDDVKEMTRFAADVGIRGSMLRELR 287

Query: 92  FKWAREEMEESEFYEGLERLRKEANAQEMGEKAEGKAAAECAEVEEKPKVITLPKRHGKI 151
           FKWARE++EE EFY GL+ +R +A+A                     P++ TLP+R G++
Sbjct: 288 FKWAREKLEEVEFYRGLDAMRSQADAAAG------------PAALPPPRLTTLPQRKGEV 335

Query: 152 KYKIYGLDLSDPKWTEVAEKIHERGEMILPEEPKPITGKCKLITDKILSLE-KEEDPSPL 210
           K+KI GLD+SDPKW EVAE+  E     +PEE K + GK K   +++L++E ++ DP+P 
Sbjct: 336 KFKIGGLDMSDPKWAEVAERAAEAEAHFVPEEAKAVDGKAKKAEEQLLAVEPRKGDPAPA 395

Query: 211 LAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKE 270
           + EWKE L+P R DW+ LL+R++ +N +LY KVAE++L+EE+F   +RDYSKLID H+K 
Sbjct: 396 MEEWKEELRPKRADWMALLERVKARNVELYLKVAEILLAEETFDVTIRDYSKLIDLHSKA 455

Query: 271 NCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVY 330
           N +EDAERIL KM E GI PDI+TS  LVHMYSKAGNL++AKE+F  ++  G QPD K++
Sbjct: 456 NHVEDAERILGKMREKGIAPDIITSITLVHMYSKAGNLEQAKESFAFIQKEGLQPDMKLF 515

Query: 331 NSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRI 390
            SMI AY+NAG+PK    LV  M    I+ + EIY+ ++R++A  G V GA ++ N M  
Sbjct: 516 TSMINAYINAGEPKQAEDLVKQMENLSIKPTREIYMDVMRAYADRGLVDGADRMRNTMTF 575

Query: 391 EEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDK 450
              +PTLE  TLLVEAYG+ GDPD A + F+ M   GHKPDDRC A MI+ + +KN LD+
Sbjct: 576 AGVEPTLECFTLLVEAYGRIGDPDHAYALFEVMRSNGHKPDDRCLAGMISGHMRKNQLDQ 635

Query: 451 ALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCD 510
           AL LLL LEK+G +PG  T  VL+DWL  L L+ EAEQL+ KI + GE  P +I V L D
Sbjct: 636 ALKLLLSLEKEGLKPGVKTNLVLLDWLSTLHLVQEAEQLVQKIRKAGEE-PIEIHVYLAD 694

Query: 511 MYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAA 570
           MYA++  E+KA ++L  LE KK  +  + FER+I+GLL GGF ++A +   +M+++GF  
Sbjct: 695 MYAKSRQEEKARKSLKILEEKKRLLKAEHFERVISGLLEGGFSEEANKYFKMMKSRGFVP 754

Query: 571 SERLKVAL 578
           SE ++V +
Sbjct: 755 SETIEVGV 762


>gi|115447253|ref|NP_001047406.1| Os02g0611400 [Oryza sativa Japonica Group]
 gi|47497186|dbj|BAD19233.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|47497609|dbj|BAD19678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536937|dbj|BAF09320.1| Os02g0611400 [Oryza sativa Japonica Group]
 gi|215715250|dbj|BAG95001.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222623225|gb|EEE57357.1| hypothetical protein OsJ_07494 [Oryza sativa Japonica Group]
          Length = 683

 Score =  512 bits (1319), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 263/561 (46%), Positives = 379/561 (67%), Gaps = 15/561 (2%)

Query: 32  DFSEDLWRTVWEVSNLVLEDMEKARKKEKMKGFLQSDKVKEMSRFAGEIGIRGDMLRELR 91
           + S+DLW  VWEVS  V + M++ R + +++G+L  ++VKEM+RFA ++GIRG+MLRELR
Sbjct: 132 ELSDDLWAAVWEVSAAVRDGMQRDRVRAELRGYLHCEEVKEMTRFASDVGIRGEMLRELR 191

Query: 92  FKWAREEMEESEFYEGLERLRKEANAQEMGEKAEGKAAAECAEVEEKPKVITLPKRHGKI 151
           FKWARE++EE EFY GL+ +R           A+ +AAA    +   P++  LP+R G+I
Sbjct: 192 FKWAREKLEEVEFYRGLDDMR-----------AQAEAAANPVALP-PPRLAALPQRKGEI 239

Query: 152 KYKIYGLDLSDPKWTEVAEKIHERGEMILPEEPKPITGKCKLITDKILSLE-KEEDPSPL 210
           K+KI+GLDLSDP W EV E+  E     +P+E KPI GK K   +K+++++ ++ DP+P 
Sbjct: 240 KFKIHGLDLSDPTWGEVVERAAEAEAHFVPQEAKPIEGKAKKAEEKLMAVDPRKGDPAPA 299

Query: 211 LAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKE 270
           + EWKE L P R DW+ LL+RL+ +N +LY KVAE++L++ESF   +RDYSKLID H+K 
Sbjct: 300 MEEWKEELLPKRADWMALLERLKARNVELYLKVAEILLADESFGATIRDYSKLIDLHSKA 359

Query: 271 NCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVY 330
           N +EDAERIL KM ENGI PD+VTS  LVHMY K GNL++A +AF+ L+  GF PD K++
Sbjct: 360 NHVEDAERILGKMKENGIAPDVVTSITLVHMYCKVGNLEQANQAFQFLKGEGFPPDMKLF 419

Query: 331 NSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRI 390
            SMI A++ +G+PK   +L+  M  S I+ ++E+++ ++ +FAQ G + GA ++   M +
Sbjct: 420 TSMIRAHLKSGEPKQAENLLREMERS-IKPTKELFMDVILAFAQRGMIDGAERVKTSMLL 478

Query: 391 EEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDK 450
             FQ T E  T L+EAYG+ G   QA + F+ M   GH+PDDRC A M+ AY  KN LD 
Sbjct: 479 AGFQLTPELYTSLIEAYGRGGHVGQAYTLFEQMRSSGHEPDDRCVAGMMVAYMMKNQLDH 538

Query: 451 ALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCD 510
           AL+ LL+LEKDG +PG  T  VL+DWL RLQL+ EAEQ++ KI + GE  P ++ V L D
Sbjct: 539 ALSFLLKLEKDGLKPGVKTNLVLLDWLSRLQLVQEAEQVVQKIRKAGEE-PLEMHVFLAD 597

Query: 511 MYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAA 570
           MYA++  E++  ++L  LE KK+ +    FERII GLL GGF ++A +   +M++ GF  
Sbjct: 598 MYAKSQQEERTRKSLKILEEKKKLLKAYHFERIIAGLLEGGFTEEANKYFKMMKSHGFVP 657

Query: 571 SERLKVALISSQTFNRQRQPT 591
           S  +++ + +S        PT
Sbjct: 658 SPTIEIGVKASFGVRGGVHPT 678


>gi|218191150|gb|EEC73577.1| hypothetical protein OsI_08035 [Oryza sativa Indica Group]
          Length = 683

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 262/561 (46%), Positives = 378/561 (67%), Gaps = 15/561 (2%)

Query: 32  DFSEDLWRTVWEVSNLVLEDMEKARKKEKMKGFLQSDKVKEMSRFAGEIGIRGDMLRELR 91
           + S+DLW  VWEVS  V + M++ R + +++G+L  ++VKEM+RFA ++GIRG+MLRELR
Sbjct: 132 ELSDDLWAAVWEVSAAVRDGMQRDRVRAELRGYLHCEEVKEMTRFASDVGIRGEMLRELR 191

Query: 92  FKWAREEMEESEFYEGLERLRKEANAQEMGEKAEGKAAAECAEVEEKPKVITLPKRHGKI 151
           FKWARE++EE EFY GL+ +R           A+ +AAA    +   P++  LP+R G+I
Sbjct: 192 FKWAREKLEEVEFYRGLDDMR-----------AQAEAAANPVALP-PPRLAALPQRKGEI 239

Query: 152 KYKIYGLDLSDPKWTEVAEKIHERGEMILPEEPKPITGKCKLITDKILSLE-KEEDPSPL 210
           K+KI+GLDLSDP W EV E+  E     +P+E  PI GK K   +K+++++ ++ DP+P 
Sbjct: 240 KFKIHGLDLSDPTWGEVVERAAEAEAHFVPQEANPIEGKAKKAEEKLMAVDPRKGDPAPA 299

Query: 211 LAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKE 270
           + EWKE L P R DW+ LL+RL+ +N +LY KVAE++L++ESF   +RDYSKLID H+K 
Sbjct: 300 MEEWKEELLPKRADWMALLERLKARNVELYLKVAEILLADESFGATIRDYSKLIDLHSKA 359

Query: 271 NCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVY 330
           N +EDAERIL KM ENGI PD+VTS  LVHMY K GNL++A +AF+ L+  GF PD K++
Sbjct: 360 NHVEDAERILGKMKENGIAPDVVTSITLVHMYCKVGNLEQANQAFQFLKGEGFPPDMKLF 419

Query: 331 NSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRI 390
            SMI A++ +G+PK   +L+  M  S I+ ++E+++ ++ +FAQ G + GA ++   M +
Sbjct: 420 TSMIRAHLKSGEPKQAENLLREMERS-IKPTKELFMDVILAFAQRGMIDGAERVKTSMLL 478

Query: 391 EEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDK 450
             FQ T E  T L+EAYG+ G   QA + F+ M   GH+PDDRC A M+ AY  KN LD 
Sbjct: 479 AGFQLTPELYTSLIEAYGRGGHVGQAYTLFEQMRSSGHEPDDRCVAGMMVAYMMKNQLDH 538

Query: 451 ALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCD 510
           AL+ LL+LEKDG +PG  T  VL+DWL RLQL+ EAEQ++ KI + GE  P ++ V L D
Sbjct: 539 ALSFLLKLEKDGLKPGVKTNLVLLDWLSRLQLVQEAEQVVQKIRKAGEE-PLEMHVFLAD 597

Query: 511 MYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAA 570
           MYA++  E++  ++L  LE KK+ +    FERII GLL GGF ++A +   +M++ GF  
Sbjct: 598 MYAKSQQEERTRKSLKILEEKKKLLKAYHFERIIAGLLEGGFTEEANKYFKMMKSHGFVP 657

Query: 571 SERLKVALISSQTFNRQRQPT 591
           S  +++ + +S        PT
Sbjct: 658 SPTIEIGVKASFGVRGGVHPT 678


>gi|212274517|ref|NP_001130401.1| uncharacterized protein LOC100191497 [Zea mays]
 gi|194689030|gb|ACF78599.1| unknown [Zea mays]
 gi|413937743|gb|AFW72294.1| hypothetical protein ZEAMMB73_720731 [Zea mays]
          Length = 673

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 254/549 (46%), Positives = 374/549 (68%), Gaps = 17/549 (3%)

Query: 32  DFSEDLWRTVWEVSNLVLEDMEKARKKEKMKGFLQSDKVKEMSRFAGEIGIRGDMLRELR 91
           + ++DLW  VWEVS  V E M + + +  ++ +L  D+VKEM+RFA ++GIRG MLRELR
Sbjct: 126 ELNDDLWAAVWEVSASVREAMRRDQVRADLRQYLHCDEVKEMTRFAVDVGIRGSMLRELR 185

Query: 92  FKWAREEMEESEFYEGLERLRKEANAQEMGEKAEGKAAAECAEVEEKPKVITLPKRHGKI 151
           FKWA E+++E EFY GL+            + A+ +A A+ A V   P++  LPKR G++
Sbjct: 186 FKWAGEKLDEVEFYRGLD-----------DKHADAEAGADRAPV---PRLTALPKRKGEV 231

Query: 152 KYKIYGLDLSDPKWTEVAEKIHERGEMILPEEPKPITGKCKLITDKILSLE-KEEDPSPL 210
           K+ +YGLD+SDPKW EVAE++ E     +PEE K + G+ K   +++LS++ +  DP P 
Sbjct: 232 KFTMYGLDMSDPKWAEVAERVAEAEAHFVPEEAKAVEGRAKKAEERLLSVDPRSGDPVPA 291

Query: 211 LAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKE 270
           + EWKE L+P+R+DWI+LL+R++ +N +LY KVAE++L +ESF+ N+RDYSKLID HAK 
Sbjct: 292 IEEWKEDLRPNRVDWISLLERIKARNVELYLKVAEILLDQESFEANIRDYSKLIDLHAKA 351

Query: 271 NCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVY 330
           N +E AER+L KM E GI PD++ S VLVHMYS+AG L++AKEAF+ +R   F+PD+K++
Sbjct: 352 NNVESAERVLGKMKEKGIAPDVIISIVLVHMYSRAGKLEQAKEAFDFIRREDFKPDRKLF 411

Query: 331 NSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRI 390
           +SMI  Y+N G+P+   +L+ +M  + ++ + EIY+ LLRS+ Q G +  A ++   M  
Sbjct: 412 SSMIKCYINHGEPEQAENLIKVMRDTRVKPTREIYIGLLRSYVQRGLMAYAERVLKTMSF 471

Query: 391 EEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR-LGHKPDDRCTASMIAAYGKKNLLD 449
           +  +PT E  T+ +EAYG+ GDP +A + FD M R  GH+ DD   A ++AAY K N LD
Sbjct: 472 DRVEPTQELYTICIEAYGRVGDPKEACAMFDQMRRKFGHEADDSSIAGVVAAYMKNNQLD 531

Query: 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLC 509
            AL  LL LEK+G + G  T  +L+DWL  LQL+ EAEQ + KI  LGE  P ++ V L 
Sbjct: 532 HALQWLLSLEKEGLQLGVKTNLMLLDWLSMLQLVPEAEQFVQKIKNLGEE-PIEVHVFLA 590

Query: 510 DMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
           DMYA++  E KA ++L  LE KK+ +  D FER+I GL+ GGF ++A + + +M++ GF 
Sbjct: 591 DMYAKSSQEDKARRSLKILEEKKKLLKSDQFERVIRGLVDGGFSEEANKFYKMMKSCGFE 650

Query: 570 ASERLKVAL 578
            S+ ++VA+
Sbjct: 651 PSKTIEVAV 659



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 4/126 (3%)

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI 517
           L+++ FE     Y+ L+D   +   +  AE++LGK+ E G AP   I + L  MY+RAG 
Sbjct: 329 LDQESFEANIRDYSKLIDLHAKANNVESAERVLGKMKEKGIAPDVIISIVLVHMYSRAGK 388

Query: 518 EKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLK 575
            ++A +A  F+  ++E   PD   F  +I   +  G  + A+ +  +M       +  + 
Sbjct: 389 LEQAKEAFDFI--RREDFKPDRKLFSSMIKCYINHGEPEQAENLIKVMRDTRVKPTREIY 446

Query: 576 VALISS 581
           + L+ S
Sbjct: 447 IGLLRS 452


>gi|195649551|gb|ACG44243.1| hypothetical protein [Zea mays]
          Length = 673

 Score =  506 bits (1303), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 253/549 (46%), Positives = 374/549 (68%), Gaps = 17/549 (3%)

Query: 32  DFSEDLWRTVWEVSNLVLEDMEKARKKEKMKGFLQSDKVKEMSRFAGEIGIRGDMLRELR 91
           + ++DLW  VWEVS  V E M + + +  ++ +L  D+VKEM+RFA ++GIRG MLRELR
Sbjct: 126 ELNDDLWAAVWEVSASVREAMRRDQVRADLRQYLHCDEVKEMTRFAVDVGIRGSMLRELR 185

Query: 92  FKWAREEMEESEFYEGLERLRKEANAQEMGEKAEGKAAAECAEVEEKPKVITLPKRHGKI 151
           FKWA E+++E EFY GL+            + A+ +A A+ A V   P++  LPKR G++
Sbjct: 186 FKWAGEKLDEVEFYRGLD-----------DKHADAEAGADRAPV---PRLTALPKRKGEV 231

Query: 152 KYKIYGLDLSDPKWTEVAEKIHERGEMILPEEPKPITGKCKLITDKILSLE-KEEDPSPL 210
           K+ +YGLD+SDPKW EVAE++ E     +PEE K + G+ K   +++LS++ +  DP P 
Sbjct: 232 KFTMYGLDMSDPKWAEVAERVAEAEAHFVPEEAKAVEGRAKKAEERLLSVDPRSGDPVPA 291

Query: 211 LAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKE 270
           + EWKE L+P+R+DWI+LL+R++ +N +LY KVAE++L +ESF+ N+RDYSKLID HAK 
Sbjct: 292 IEEWKEDLRPNRVDWISLLERIKARNVELYLKVAEILLDQESFEANIRDYSKLIDLHAKA 351

Query: 271 NCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVY 330
           N +E AER+L KM E GI PD++ S VLVHMYS+AG L++AKEAF+ +R   F+PD+K++
Sbjct: 352 NNVESAERVLGKMKEKGIAPDVIISIVLVHMYSRAGKLEQAKEAFDFIRREDFKPDRKLF 411

Query: 331 NSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRI 390
           +SMI  Y+N G+P+   +L+ +M  + ++ + EIY+ LLRS+ Q G +  A ++   M  
Sbjct: 412 SSMIKCYINHGEPEQAENLIKVMRDTRVKPTREIYIGLLRSYVQRGLMAYAERVLKTMSF 471

Query: 391 EEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR-LGHKPDDRCTASMIAAYGKKNLLD 449
           +  +PT E  T+ +EAYG+ GDP +A + FD M R  GH+ DD   A ++AAY K N LD
Sbjct: 472 DRVEPTQELYTICIEAYGRVGDPKEACAMFDQMRRKFGHEADDSSIAGVVAAYMKNNQLD 531

Query: 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLC 509
            AL  LL L+K+G + G  T  +L+DWL  LQL+ EAEQ + KI  LGE  P ++ V L 
Sbjct: 532 HALQWLLSLDKEGLQLGVKTNLMLLDWLSMLQLVPEAEQFVQKIKNLGEE-PIEVHVFLA 590

Query: 510 DMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
           DMYA++  E KA ++L  LE KK+ +  D FER+I GL+ GGF ++A + + +M++ GF 
Sbjct: 591 DMYAKSSQEDKARRSLKILEEKKKLLKSDQFERVIRGLVDGGFSEEANKFYKMMKSCGFE 650

Query: 570 ASERLKVAL 578
            S+ ++VA+
Sbjct: 651 PSKTIEVAV 659



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 4/126 (3%)

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI 517
           L+++ FE     Y+ L+D   +   +  AE++LGK+ E G AP   I + L  MY+RAG 
Sbjct: 329 LDQESFEANIRDYSKLIDLHAKANNVESAERVLGKMKEKGIAPDVIISIVLVHMYSRAGK 388

Query: 518 EKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLK 575
            ++A +A  F+  ++E   PD   F  +I   +  G  + A+ +  +M       +  + 
Sbjct: 389 LEQAKEAFDFI--RREDFKPDRKLFSSMIKCYINHGEPEQAENLIKVMRDTRVKPTREIY 446

Query: 576 VALISS 581
           + L+ S
Sbjct: 447 IGLLRS 452


>gi|242062290|ref|XP_002452434.1| hypothetical protein SORBIDRAFT_04g025740 [Sorghum bicolor]
 gi|241932265|gb|EES05410.1| hypothetical protein SORBIDRAFT_04g025740 [Sorghum bicolor]
          Length = 682

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 261/554 (47%), Positives = 377/554 (68%), Gaps = 17/554 (3%)

Query: 32  DFSEDLWRTVWEVSNLVLEDMEKARKKEKMKGFLQSDKVKEMSRFAGEIGIRGDMLRELR 91
           + ++DLW  VWEVS  V E M + + +  ++ +L  D+VKEM+RFA ++GIRG MLRELR
Sbjct: 129 ELNDDLWAVVWEVSASVREAMRRDQVRADLRQYLHCDEVKEMTRFAVDVGIRGAMLRELR 188

Query: 92  FKWAREEMEESEFYEGLERLRKEANAQEMGEKAEGKAAAECAEVEEKPKVITLPKRHGKI 151
           FKWARE+++E EFY GL+            +K     AA        P++  LPKR G++
Sbjct: 189 FKWAREKLDEVEFYRGLD------------DKRSDAEAAADPAPAPVPRLTALPKRKGEV 236

Query: 152 KYKIYGLDLSDPKWTEVAEKIHERGEMILPEEPKPITGKCKLITDKILSLE-KEEDPSPL 210
           K+ +YGLD+SDPKW EVAE++ E     +PEE K + G+ K   +++L ++ +  DP P 
Sbjct: 237 KFTMYGLDMSDPKWAEVAERVAEAEAHFVPEEAKAVEGRAKKAEERLLLVDPRRGDPVPA 296

Query: 211 LAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKE 270
           + EWKE L+P R+DWI LL+R++ +N +LY KVAE++L +ESF+ N+RDYSKLID HAK 
Sbjct: 297 IEEWKEDLRPKRVDWIALLERIKARNVELYLKVAEILLDQESFEANIRDYSKLIDLHAKA 356

Query: 271 NCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVY 330
           N +E AER+L KM E GI PD++TS VLVHMYSKAGNL++AKEAFE +R  GF+PD K++
Sbjct: 357 NHVESAERVLGKMKEKGIAPDVITSIVLVHMYSKAGNLEQAKEAFEFIRREGFKPDLKLF 416

Query: 331 NSMIMAYVNAGQPKLGMSLVDMMITSG--IERSEEIYLALLRSFAQCGDVRGAGQITNIM 388
           +SMI  Y+N G+P+   +L+  M  +   ++ + EIY  ++R++AQ G +  A ++ N+M
Sbjct: 417 SSMINCYINHGEPEEAENLIKSMRGTRVIVKPTREIYTDIVRAYAQRGMMTCAQRVLNMM 476

Query: 389 RIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM-IRLGHKPDDRCTASMIAAYGKKNL 447
             +E +PT E   + +EAYG+ GDP QAR+ FD +  RLGH+P D   A ++AA+ +KN 
Sbjct: 477 THDEIKPTEELYAICIEAYGRIGDPIQARAMFDQIRRRLGHEPGDSSIAGVVAAHIEKNQ 536

Query: 448 LDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVS 507
           LD+AL  LL LEK+G E G  T  VL+DWL  LQL+ EAEQL+ KI +LGE  P ++ V 
Sbjct: 537 LDEALQWLLSLEKEGVELGVKTNLVLLDWLSMLQLVLEAEQLVQKIKKLGEE-PIEVHVF 595

Query: 508 LCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
           L  MYA++  E+KA ++L  LE KK+ +  D FER+I GLL GGF ++A + + +M++ G
Sbjct: 596 LAGMYAKSRQEEKARRSLKILEEKKKLLKSDQFERVIRGLLDGGFSEEANKYYKMMKSCG 655

Query: 568 FAASERLKVALISS 581
           F  SE ++V + +S
Sbjct: 656 FEPSETIEVGVKAS 669


>gi|326489801|dbj|BAK01881.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 788

 Score =  496 bits (1278), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 267/568 (47%), Positives = 372/568 (65%), Gaps = 17/568 (2%)

Query: 9   VVSEMEKGGLERMIESAS-ASPSQD---FSEDLWRTVWEVSNLVLEDMEKARKKEKMKGF 64
           V+ EM +   E ++ S S A P  D    S+DLW  VWEVS  V E M + + +  ++ +
Sbjct: 214 VLDEMLRLIAEAVLNSLSGADPGPDTVELSDDLWAAVWEVSASVREAMRRDQVRADLRNY 273

Query: 65  LQSDKVKEMSRFAGEIGIRGDMLRELRFKWAREEMEESEFYEGLERLRKEANAQEMGEKA 124
           L SD VKEM+RFA ++GIRG MLRELRFKWARE++EE EFY GL+ + ++A+A      A
Sbjct: 274 LHSDDVKEMTRFAVDVGIRGAMLRELRFKWAREKLEEVEFYRGLDVMHQQADADAADSPA 333

Query: 125 EGKAAAECAEVEEKPKVITLPKRHGKIKYKIYGLDLSDPKWTEVAEKIHERGEMILPEEP 184
               A          ++  LP+R G++K+KI GLDLSDPKW EVAE+  E     +PEE 
Sbjct: 334 APPPA----------RLTALPQRKGEVKFKISGLDLSDPKWAEVAERAAESEAHFVPEEA 383

Query: 185 KPITGKCKLITDKILSLE-KEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKV 243
           K + GK K   +++L++E ++ +P P + EWKE L+P R+DW+ LL+R++ +N +LY K+
Sbjct: 384 KAVDGKAKKAEEQLLAVEPRKGNPIPAMEEWKEELRPKRVDWLALLERVKARNVELYLKI 443

Query: 244 AELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS 303
           AE++L E+SF  N+RDYSKLID H+K   + DAERIL KM E  I PDI+TS  LVHMYS
Sbjct: 444 AEILLDEDSFAANIRDYSKLIDLHSKATHVLDAERILGKMKEKDIAPDILTSITLVHMYS 503

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363
           K+GNL++A  AF+ +   G QPD +++ SMI A +NAG PK    L+  M    ++ S E
Sbjct: 504 KSGNLEQATRAFDFIEKEGLQPDTRLFTSMISACINAGVPKQAEKLLKKMDELSMKPSRE 563

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
           +Y+ ++R++A+   V GA  +   M +   +PTLE  TLL+EAYG+AG+PD A   F+ M
Sbjct: 564 LYMDVMRAYAERNLVDGAQMMRTQMSMAGIEPTLECFTLLIEAYGRAGNPDPAYEAFEQM 623

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483
            + GH+PDDRC A M+    K N LD+AL LLL L K+G +PG  T  VL+DWL  LQL+
Sbjct: 624 RKNGHEPDDRCLAGMMTGLMKTNQLDQALKLLLSL-KEGVKPGVKTNLVLLDWLSMLQLV 682

Query: 484 NEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERI 543
            EAEQL+ KI + GE  P +I V L DMYA++  E+KA ++L  LE KK  +  D FERI
Sbjct: 683 QEAEQLVQKIRKAGEE-PLEIHVYLADMYAKSRQEEKARKSLKILEEKKRLLKADHFERI 741

Query: 544 INGLLAGGFLQDAQRVHGLMEAQGFAAS 571
           I GL  GGF +DA++   +M+++GF  S
Sbjct: 742 IRGLQQGGFWEDAKKYFKMMKSRGFVPS 769


>gi|224082876|ref|XP_002306874.1| predicted protein [Populus trichocarpa]
 gi|222856323|gb|EEE93870.1| predicted protein [Populus trichocarpa]
          Length = 297

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 218/298 (73%), Positives = 254/298 (85%), Gaps = 1/298 (0%)

Query: 283 MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
           MNENGI PD +T+ +LVHMYSKAGNLDRA+EA ESLR  GF+PD+++YNSMIMAYVNAGQ
Sbjct: 1   MNENGIQPDALTTNILVHMYSKAGNLDRAREALESLRRLGFRPDREIYNSMIMAYVNAGQ 60

Query: 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402
           PKL   L+  M    I+ + EIY+ LLRSF+Q GDV GAG+I   M+   FQP LESCTL
Sbjct: 61  PKLAELLMREMEARDIKPTMEIYMTLLRSFSQHGDVGGAGRIATTMQFAGFQPNLESCTL 120

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           LVE +GQ GDPDQAR+NFDY++RLGHKPDDRCTA MIAAY KKN+LDKAL LLLELE+DG
Sbjct: 121 LVETFGQVGDPDQARNNFDYLMRLGHKPDDRCTAGMIAAYEKKNMLDKALKLLLELEQDG 180

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522
           FEPG AT TVLVDWLG+LQL++E EQLLG+I+E GEAPP KIQVSLCDMYARAG+E+KAL
Sbjct: 181 FEPGLATDTVLVDWLGKLQLVDEVEQLLGRIAEQGEAPPLKIQVSLCDMYARAGVERKAL 240

Query: 523 QALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
           QALG +EAKKEQ+G  DFER++ GL+AGGF+Q+AQRVHGLMEAQGF ASE LKVAL +
Sbjct: 241 QALGVVEAKKEQLGLHDFERVVGGLIAGGFVQEAQRVHGLMEAQGF-ASEHLKVALTA 297



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 47/248 (18%), Positives = 106/248 (42%)

Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311
            F+ +   Y+ +I A+      + AE ++++M    I P +     L+  +S+ G++  A
Sbjct: 40  GFRPDREIYNSMIMAYVNAGQPKLAELLMREMEARDIKPTMEIYMTLLRSFSQHGDVGGA 99

Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
                +++  GFQP+ +    ++  +   G P    +  D ++  G +  +     ++ +
Sbjct: 100 GRIATTMQFAGFQPNLESCTLLVETFGQVGDPDQARNNFDYLMRLGHKPDDRCTAGMIAA 159

Query: 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
           + +   +  A ++   +  + F+P L + T+LV+  G+    D+       +   G  P 
Sbjct: 160 YEKKNMLDKALKLLLELEQDGFEPGLATDTVLVDWLGKLQLVDEVEQLLGRIAEQGEAPP 219

Query: 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
            +   S+   Y +  +  KAL  L  +E    + G   +  +V  L     + EA+++ G
Sbjct: 220 LKIQVSLCDMYARAGVERKALQALGVVEAKKEQLGLHDFERVVGGLIAGGFVQEAQRVHG 279

Query: 492 KISELGEA 499
            +   G A
Sbjct: 280 LMEAQGFA 287


>gi|193806506|sp|Q940Z1.2|PPR51_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g19525
          Length = 316

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 170/299 (56%), Positives = 232/299 (77%), Gaps = 1/299 (0%)

Query: 283 MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
           M++NGI PDI+T+T LVHMYSK+GN +RA EAFE+L+S+G +PD+K+Y +MI+ YVNAG+
Sbjct: 1   MSQNGIFPDILTATALVHMYSKSGNFERATEAFENLKSYGLRPDEKIYEAMILGYVNAGK 60

Query: 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP-TLESCT 401
           PKLG  L+  M    ++ SEE+Y+ALLR++AQ GD  GA  I++ M+     P + E+ +
Sbjct: 61  PKLGERLMKEMQAKELKASEEVYMALLRAYAQMGDANGAAGISSSMQYASDGPLSFEAYS 120

Query: 402 LLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD 461
           L VEAYG+AG  D+A+SNFD M +LGHKPDD+C A+++ AY  +N LDKAL LLL+LEKD
Sbjct: 121 LFVEAYGKAGQVDKAKSNFDEMRKLGHKPDDKCIANLVRAYKGENSLDKALRLLLQLEKD 180

Query: 462 GFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKA 521
           G E G  TYTVLVDW+  L LI EAEQLL KIS+LGEAPPF++QVSLC MY+    EKK 
Sbjct: 181 GIEIGVITYTVLVDWMANLGLIEEAEQLLVKISQLGEAPPFELQVSLCCMYSGVRNEKKT 240

Query: 522 LQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
           LQALG LEAK++QMGP++F+++I+ L  GGF +DA+R++  MEA+ F  S+RL++ +++
Sbjct: 241 LQALGVLEAKRDQMGPNEFDKVISALKRGGFEKDARRMYKYMEARKFLPSQRLQMDMVA 299


>gi|224082874|ref|XP_002306873.1| predicted protein [Populus trichocarpa]
 gi|222856322|gb|EEE93869.1| predicted protein [Populus trichocarpa]
          Length = 383

 Score =  323 bits (828), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 170/256 (66%), Positives = 210/256 (82%), Gaps = 8/256 (3%)

Query: 1   MLLMIVGKVVSEMEKGGLERMIESASASPSQDFSEDLWRTVWEVSNLVLEDMEKARKKEK 60
           MLL+IVG+VVSEMEKGGLE+M++ + A+ SQ FS DLW+TVWEVSN VL DMEK RKKEK
Sbjct: 122 MLLVIVGEVVSEMEKGGLEQMLDVSVATLSQGFSRDLWKTVWEVSNAVLADMEKERKKEK 181

Query: 61  MKGFLQSDKVKEMSRFAGEIGIRGDMLRELRFKWAREEMEESEFYEGLERLRKEANAQEM 120
           MKGFLQ ++V+E+ RFA EIGIRGDM+R+ RFKWARE+MEES+FYEGL+RLR+E  AQE 
Sbjct: 182 MKGFLQCEEVQELCRFAAEIGIRGDMMRDFRFKWAREKMEESDFYEGLKRLREEVRAQEK 241

Query: 121 GEKAEGKAAAECAEV-----EEKPKVITLPKRHGKIKYKIYGLDLSDPKWTEVAEKIHER 175
            E+ EGK A    E      EEKPKV+TLP RHGKI YKIYGLDLS+PKW +VA++IHE 
Sbjct: 242 AEE-EGKNAVAMGEEAAIMDEEKPKVVTLPMRHGKINYKIYGLDLSNPKWAKVADRIHES 300

Query: 176 GEMILPEEPKPITGKCKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQ 235
            ++  PEEPKPI+GKCK++T+KIL L++E+DPSPLLA+W EL +PSRIDW  LLD+L+EQ
Sbjct: 301 EKLDWPEEPKPISGKCKIVTEKILELKEEDDPSPLLAQWAELQKPSRIDWFTLLDKLKEQ 360

Query: 236 NTQLYFK--VAELVLS 249
           NT+LY K  V + + S
Sbjct: 361 NTRLYPKRLVIDFIFS 376


>gi|340034695|gb|AEK28679.1| pentatricopeptide repeat protein [Populus tremula]
          Length = 222

 Score =  315 bits (806), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 163/222 (73%), Positives = 187/222 (84%)

Query: 295 STVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMI 354
           + +LVHMYSKAGNLDRA+EA ESLR  GF+PD+++YNSMIMAYVNAGQPKL   L+  M 
Sbjct: 1   TNILVHMYSKAGNLDRAREALESLRRLGFRPDREIYNSMIMAYVNAGQPKLAELLMREME 60

Query: 355 TSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPD 414
              I+ + EIY+ LLRSF+Q GDV GAG+I   M+   FQP LESCTLLVE +GQ GDPD
Sbjct: 61  ARDIKPTMEIYMTLLRSFSQHGDVGGAGRIATTMQFAGFQPNLESCTLLVETFGQVGDPD 120

Query: 415 QARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
           QAR+NFDY++RLGHKPDDRCTA MIAAY KKN+LDKAL LLLELEKDGFEPG AT TVLV
Sbjct: 121 QARNNFDYLMRLGHKPDDRCTAGMIAAYEKKNMLDKALKLLLELEKDGFEPGLATDTVLV 180

Query: 475 DWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
           DWLG+LQL++E EQLLG+I+E GEAPP KIQVSLCDMYARAG
Sbjct: 181 DWLGKLQLVDEVEQLLGRIAEQGEAPPLKIQVSLCDMYARAG 222



 Score = 39.3 bits (90), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 34/193 (17%), Positives = 83/193 (43%)

Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311
            F+ +   Y+ +I A+      + AE ++++M    I P +     L+  +S+ G++  A
Sbjct: 28  GFRPDREIYNSMIMAYVNAGQPKLAELLMREMEARDIKPTMEIYMTLLRSFSQHGDVGGA 87

Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
                +++  GFQP+ +    ++  +   G P    +  D ++  G +  +     ++ +
Sbjct: 88  GRIATTMQFAGFQPNLESCTLLVETFGQVGDPDQARNNFDYLMRLGHKPDDRCTAGMIAA 147

Query: 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
           + +   +  A ++   +  + F+P L + T+LV+  G+    D+       +   G  P 
Sbjct: 148 YEKKNMLDKALKLLLELEKDGFEPGLATDTVLVDWLGKLQLVDEVEQLLGRIAEQGEAPP 207

Query: 432 DRCTASMIAAYGK 444
            +   S+   Y +
Sbjct: 208 LKIQVSLCDMYAR 220


>gi|15450492|gb|AAK96539.1| At1g19520/F18O14_36 [Arabidopsis thaliana]
 gi|16974463|gb|AAL31235.1| At1g19520/F18O14_36 [Arabidopsis thaliana]
          Length = 266

 Score =  278 bits (712), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 139/249 (55%), Positives = 188/249 (75%), Gaps = 1/249 (0%)

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           MI+ YVNAG+PKLG  L+  M    ++ SEE+Y+ALLR++AQ GD  GA  I++ M+   
Sbjct: 1   MILGYVNAGKPKLGERLMKEMQAKELKASEEVYMALLRAYAQMGDANGAAGISSSMQYAS 60

Query: 393 FQP-TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
             P + E+ +L VEAYG+AG  D+A+SNFD M +LGHKPDD+C A+++ AY  +N LDKA
Sbjct: 61  DGPLSFEAYSLFVEAYGKAGQVDKAKSNFDEMRKLGHKPDDKCIANLVRAYKGENSLDKA 120

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
           L LLL+LEKDG E G  TYTVLVDW+  L LI EAEQLL KIS+LGEAPPF++QVSLC M
Sbjct: 121 LRLLLQLEKDGIEIGVITYTVLVDWMANLGLIEEAEQLLVKISQLGEAPPFELQVSLCCM 180

Query: 512 YARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAAS 571
           Y+    EKK LQALG LEAK++QMGP++F+++I+ L  GGF +DA+R++  MEA+ F  S
Sbjct: 181 YSGVRNEKKTLQALGVLEAKRDQMGPNEFDKVISALKRGGFEKDARRMYKYMEARKFLPS 240

Query: 572 ERLKVALIS 580
           +RL++ +++
Sbjct: 241 QRLQMDMVA 249



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 66/153 (43%), Gaps = 9/153 (5%)

Query: 245 ELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVP-DIVTSTVLVHMYS 303
           EL  SEE +   +R Y+++ DA+        A  I   M      P      ++ V  Y 
Sbjct: 25  ELKASEEVYMALLRAYAQMGDANG-------AAGISSSMQYASDGPLSFEAYSLFVEAYG 77

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363
           KAG +D+AK  F+ +R  G +PD K   +++ AY         + L+  +   GIE    
Sbjct: 78  KAGQVDKAKSNFDEMRKLGHKPDDKCIANLVRAYKGENSLDKALRLLLQLEKDGIEIGVI 137

Query: 364 IYLALLRSFAQCGDVRGAGQ-ITNIMRIEEFQP 395
            Y  L+   A  G +  A Q +  I ++ E  P
Sbjct: 138 TYTVLVDWMANLGLIEEAEQLLVKISQLGEAPP 170


>gi|334182695|ref|NP_001185038.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75155764|sp|Q8LEZ4.1|NFD5_ARATH RecName: Full=Protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial;
           Flags: Precursor
 gi|21537347|gb|AAM61688.1| unknown [Arabidopsis thaliana]
 gi|94442431|gb|ABF19003.1| At1g19520 [Arabidopsis thaliana]
 gi|332191743|gb|AEE29864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 372

 Score =  265 bits (676), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 146/245 (59%), Positives = 187/245 (76%), Gaps = 3/245 (1%)

Query: 1   MLLMIVGKVVSEMEKGGLERMIESASASPSQDFSEDLWRTVWEVSNLVLEDMEKARKKEK 60
           MLL+IV KVV E+E+GG  + + SA  SPS +FS+DLW T+WEVSN VL+DMEK RKKEK
Sbjct: 127 MLLLIVEKVVEEIERGGFNK-VGSAPPSPSSEFSDDLWATIWEVSNTVLKDMEKERKKEK 185

Query: 61  MKGFLQSDKVKEMSRFAGEIGIRGDMLRELRFKWAREEMEESEFYEGLERLRKEANAQEM 120
           MK ++QS +V EM RFAGEIGIRGD+LRELRFKWARE+M+++EFYE LE+ R   N+   
Sbjct: 186 MKQYVQSPEVMEMCRFAGEIGIRGDLLRELRFKWAREKMDDAEFYESLEQQRDLDNSIRE 245

Query: 121 GEKAEGKAAAE--CAEVEEKPKVITLPKRHGKIKYKIYGLDLSDPKWTEVAEKIHERGEM 178
            E  +G+   E      E + + I+LPKR GK+KYKIYGL+LSDPKW E+A+KIHE  E 
Sbjct: 246 SETVDGEVEEEGFVPSDEVESRSISLPKRKGKLKYKIYGLELSDPKWVEMADKIHEAEEE 305

Query: 179 ILPEEPKPITGKCKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQ 238
               EPKP+TGKCKL+ +K+ SL++ +DPS LLAEW ELL+P+R+DWI L+++LRE NT 
Sbjct: 306 ADWREPKPVTGKCKLVMEKLESLQEGDDPSGLLAEWAELLEPNRVDWIALINQLREGNTH 365

Query: 239 LYFKV 243
            Y KV
Sbjct: 366 AYLKV 370


>gi|357506869|ref|XP_003623723.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498738|gb|AES79941.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 426

 Score =  246 bits (628), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 128/328 (39%), Positives = 199/328 (60%), Gaps = 1/328 (0%)

Query: 164 KWTEVAEKIHERGEMILPEEPKPITGKCKLITDKILSLEKEEDP-SPLLAEWKELLQPSR 222
           +W E+   I E  +  + + P  +  +CK +  +I+   +E+     +L  W E+++P+R
Sbjct: 87  RWNEIRNDITEEQKQAIAKLPFRMEKRCKAVMRQIICFSEEKGRLCDVLRAWVEIMKPTR 146

Query: 223 IDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKK 282
            DW+++L  L+  +  LY +VAE  L EESF+ N+RDY+KLI  ++KEN LE AE I   
Sbjct: 147 ADWLSVLKELKNMDHPLYLEVAEHALVEESFEPNLRDYTKLIHYYSKENQLEAAENIFTL 206

Query: 283 MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
           M + G + D V  T +VHMYSKAG+LDRA+E FE ++  G   DK+ Y SMIMAY+ AG 
Sbjct: 207 MKQRGFICDQVILTTMVHMYSKAGHLDRAEEYFEEIKLLGEPLDKRSYGSMIMAYIRAGM 266

Query: 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402
           P+ G SL++ M    I    E+Y ALLR+++  G+  GA ++ + +++    P  + C+L
Sbjct: 267 PEKGESLLEEMDAQDIYAGSEVYKALLRAYSVIGNAEGAQRVFDAIQLAGIIPDDKMCSL 326

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           L+ AY  AG   +AR  F+ M R G +P D+C +S++ AY K+N+L+ AL  L+ELE+DG
Sbjct: 327 LIYAYSMAGQSQKARIAFENMKRAGIEPTDKCISSVLVAYEKENMLNTALEFLIELERDG 386

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLL 490
                 T  +L  W  +L ++ E E +L
Sbjct: 387 IMVKEETSRILAGWFRKLGVVEEVELVL 414



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 79/186 (42%), Gaps = 4/186 (2%)

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
           Y  L+  +++   +  A  I  +M+   F       T +V  Y +AG  D+A   F+ + 
Sbjct: 184 YTKLIHYYSKENQLEAAENIFTLMKQRGFICDQVILTTMVHMYSKAGHLDRAEEYFEEIK 243

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
            LG   D R   SMI AY +  + +K  +LL E++      G   Y  L+     +    
Sbjct: 244 LLGEPLDKRSYGSMIMAYIRAGMPEKGESLLEEMDAQDIYAGSEVYKALLRAYSVIGNAE 303

Query: 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERII 544
            A+++   I   G  P  K+   L   Y+ AG  +KA   + F   K+  + P D  + I
Sbjct: 304 GAQRVFDAIQLAGIIPDDKMCSLLIYAYSMAGQSQKA--RIAFENMKRAGIEPTD--KCI 359

Query: 545 NGLLAG 550
           + +L  
Sbjct: 360 SSVLVA 365



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 73/163 (44%)

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           P+ R    +I  Y K+N L+ A N+   +++ GF       T +V    +   ++ AE+ 
Sbjct: 179 PNLRDYTKLIHYYSKENQLEAAENIFTLMKQRGFICDQVILTTMVHMYSKAGHLDRAEEY 238

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLA 549
             +I  LGE    +   S+   Y RAG+ +K    L  ++A+    G + ++ ++     
Sbjct: 239 FEEIKLLGEPLDKRSYGSMIMAYIRAGMPEKGESLLEEMDAQDIYAGSEVYKALLRAYSV 298

Query: 550 GGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQPTR 592
            G  + AQRV   ++  G    +++   LI + +   Q Q  R
Sbjct: 299 IGNAEGAQRVFDAIQLAGIIPDDKMCSLLIYAYSMAGQSQKAR 341


>gi|388518405|gb|AFK47264.1| unknown [Lotus japonicus]
          Length = 414

 Score =  241 bits (615), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 130/333 (39%), Positives = 199/333 (59%), Gaps = 3/333 (0%)

Query: 164 KWTEVAEKI-HERGEMILPEEPKPITGKCKLITDKILSLEKEE-DPSPLLAEWKELLQPS 221
           +WTE+   I HE+ E I  + P  +T +CK +  +I+    E+ + S LL  W ++++P 
Sbjct: 77  RWTEIGHNITHEQNEAI-SKLPFKMTKRCKALMRQIICFSAEKGNVSDLLNAWVKIMKPI 135

Query: 222 RIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILK 281
           R +W+++L  L      LY +VAE  L EESF+ N+RDY+ +I    K N LE+AE IL 
Sbjct: 136 RAEWLSVLKELETMEHPLYLEVAEHALLEESFEVNIRDYTNIIHYCGKHNQLEEAENILT 195

Query: 282 KMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAG 341
            M + G + D V  T +VH+YSKAG+LDRA+E FE +R  G   DK+ Y SMI AY+ AG
Sbjct: 196 AMKQRGFICDQVILTTMVHIYSKAGHLDRAEEYFEEIRLLGEPLDKRSYGSMITAYIRAG 255

Query: 342 QPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCT 401
            P+ G SL++ M    I    E+Y ALLR++++ G+  GA ++ + +++    P  + C 
Sbjct: 256 MPERGESLLEEMDAREIYAGSEVYKALLRAYSRIGNAEGAQRVFDAIQLAGIIPDDKICG 315

Query: 402 LLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD 461
           L+ +AYG AG  ++AR  F+ M R G +P DRC  S++ AY K++ L+ AL  L++LEK+
Sbjct: 316 LVTKAYGMAGQSEKARIAFENMKRAGIEPTDRCIGSVLVAYEKESKLNTALEFLIDLEKE 375

Query: 462 GFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
           G   G     +L  W  +L ++ E E +L   S
Sbjct: 376 GIMVGEEASAILAGWFRKLGVVEEVELVLRDFS 408



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 65/150 (43%), Gaps = 4/150 (2%)

Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
           T +V  Y +AG  D+A   F+ +  LG   D R   SMI AY +  + ++  +LL E++ 
Sbjct: 210 TTMVHIYSKAGHLDRAEEYFEEIRLLGEPLDKRSYGSMITAYIRAGMPERGESLLEEMDA 269

Query: 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKK 520
                G   Y  L+    R+     A+++   I   G  P  KI   +   Y  AG  +K
Sbjct: 270 REIYAGSEVYKALLRAYSRIGNAEGAQRVFDAIQLAGIIPDDKICGLVTKAYGMAGQSEK 329

Query: 521 ALQALGFLEAKKEQMGPDDFERIINGLLAG 550
           A   + F   K+  + P D  R I  +L  
Sbjct: 330 A--RIAFENMKRAGIEPTD--RCIGSVLVA 355



 Score = 43.9 bits (102), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 67/142 (47%)

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
           R   ++I   GK N L++A N+L  +++ GF       T +V    +   ++ AE+   +
Sbjct: 172 RDYTNIIHYCGKHNQLEEAENILTAMKQRGFICDQVILTTMVHIYSKAGHLDRAEEYFEE 231

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
           I  LGE    +   S+   Y RAG+ ++    L  ++A++   G + ++ ++      G 
Sbjct: 232 IRLLGEPLDKRSYGSMITAYIRAGMPERGESLLEEMDAREIYAGSEVYKALLRAYSRIGN 291

Query: 553 LQDAQRVHGLMEAQGFAASERL 574
            + AQRV   ++  G    +++
Sbjct: 292 AEGAQRVFDAIQLAGIIPDDKI 313


>gi|224130012|ref|XP_002320730.1| predicted protein [Populus trichocarpa]
 gi|222861503|gb|EEE99045.1| predicted protein [Populus trichocarpa]
          Length = 407

 Score =  240 bits (613), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 126/328 (38%), Positives = 193/328 (58%), Gaps = 1/328 (0%)

Query: 164 KWTEVAEKIHERGEMILPEEPKPITGKCKLITDKILSL-EKEEDPSPLLAEWKELLQPSR 222
           +W E+   I E  +  + + P  +T +CK +  +I+   +K+     LL+ W ++++P R
Sbjct: 74  RWVEIGPNIPEEQKQAISQLPFKMTKRCKALMRQIICFNDKKGSLRGLLSAWVKIMKPRR 133

Query: 223 IDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKK 282
            DW+++L  L +    LY +V E+ L EESF+ NVRDY+K+I  +   N LE+AER    
Sbjct: 134 KDWLSILKELNKMEHPLYLEVVEIALLEESFEANVRDYTKIIHFYGMNNQLEEAERTRLA 193

Query: 283 MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
           M E G V D VT T ++HMYSK GNL  A+E FE L+  G   D++ Y SMIMAY+ AG 
Sbjct: 194 MEERGFVSDQVTLTAMIHMYSKGGNLTLAEETFEELKLLGQPLDRRSYGSMIMAYIRAGM 253

Query: 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402
           P+ G  ++  M    I    E+Y ALLR+++  GD  GA ++ + +++    P   +C +
Sbjct: 254 PEKGEMILREMDAQEIRAGSEVYKALLRAYSIIGDADGAQRVFDAIQLAGIPPDDRTCAV 313

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           L+ AYG AG    A + F+ M R G +P DRC A ++AAY K+N L++AL+ L+ LE++ 
Sbjct: 314 LLNAYGMAGQSQNAYATFENMWRAGIEPTDRCVALVLAAYEKENKLNQALDFLIGLEREK 373

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLL 490
              G     VL +W GRL ++ E E +L
Sbjct: 374 LIIGKEASEVLAEWFGRLGVVKEVELVL 401



 Score = 41.2 bits (95), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 69/157 (43%)

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
           R    +I  YG  N L++A    L +E+ GF     T T ++    +   +  AE+   +
Sbjct: 169 RDYTKIIHFYGMNNQLEEAERTRLAMEERGFVSDQVTLTAMIHMYSKGGNLTLAEETFEE 228

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
           +  LG+    +   S+   Y RAG+ +K    L  ++A++ + G + ++ ++      G 
Sbjct: 229 LKLLGQPLDRRSYGSMIMAYIRAGMPEKGEMILREMDAQEIRAGSEVYKALLRAYSIIGD 288

Query: 553 LQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQ 589
              AQRV   ++  G    +R    L+++     Q Q
Sbjct: 289 ADGAQRVFDAIQLAGIPPDDRTCAVLLNAYGMAGQSQ 325


>gi|356530135|ref|XP_003533639.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g01970-like [Glycine max]
          Length = 356

 Score =  240 bits (612), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 125/328 (38%), Positives = 192/328 (58%), Gaps = 1/328 (0%)

Query: 164 KWTEVAEKIHERGEMILPEEPKPITGKCKLITDKILSLEKEEDP-SPLLAEWKELLQPSR 222
           +W EV + + +  +  + + P  +  + K +  +I+    E+   S LL  W +L++P+R
Sbjct: 18  RWIEVGKNVTKEQQQAISKLPFRMADRSKALMRQIICFSAEKGTISDLLRSWVKLMKPTR 77

Query: 223 IDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKK 282
            DW+++L  LR      Y +VA+  L EESF+ N+RDY+K+I  + + N LEDAE+ L  
Sbjct: 78  ADWLSVLKELRTTEHPFYLEVAKHTLLEESFEVNIRDYTKIIHYYGEHNLLEDAEKFLTL 137

Query: 283 MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
           M + G + D V  T +VHM SKAGN DRAKE FE ++  G   DK+ Y SMIMAY+ AG 
Sbjct: 138 MKQRGFIYDQVILTTMVHMSSKAGNHDRAKEYFEEIKLLGEPLDKRSYGSMIMAYIRAGM 197

Query: 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402
           P+ G +L+  M    I    EIY ALLR+++  G+  GA ++ + +++    P  + C+L
Sbjct: 198 PEEGENLLQQMEAQEILAGSEIYKALLRAYSMIGNAEGAQRVFDAIQLAGITPDDKICSL 257

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           LV AY  AG   +A   F+ M R G KP D+C AS++ AY K++ ++ AL  L++LE+DG
Sbjct: 258 LVNAYAMAGQSQKALIAFENMRRAGIKPSDKCIASVLVAYEKESKINTALEFLIDLERDG 317

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLL 490
              G     VL  W  +L ++ E E +L
Sbjct: 318 IMVGEEASAVLAKWFRKLGVVEEVELVL 345



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 2/175 (1%)

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
           Y  ++  + +   +  A +   +M+   F       T +V    +AG+ D+A+  F+ + 
Sbjct: 115 YTKIIHYYGEHNLLEDAEKFLTLMKQRGFIYDQVILTTMVHMSSKAGNHDRAKEYFEEIK 174

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
            LG   D R   SMI AY +  + ++  NLL ++E      G   Y  L+     +    
Sbjct: 175 LLGEPLDKRSYGSMIMAYIRAGMPEEGENLLQQMEAQEILAGSEIYKALLRAYSMIGNAE 234

Query: 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD 539
            A+++   I   G  P  KI   L + YA AG  +KAL  + F   ++  + P D
Sbjct: 235 GAQRVFDAIQLAGITPDDKICSLLVNAYAMAGQSQKAL--IAFENMRRAGIKPSD 287



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 70/157 (44%)

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
           R    +I  YG+ NLL+ A   L  +++ GF       T +V    +    + A++   +
Sbjct: 113 RDYTKIIHYYGEHNLLEDAEKFLTLMKQRGFIYDQVILTTMVHMSSKAGNHDRAKEYFEE 172

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
           I  LGE    +   S+   Y RAG+ ++    L  +EA++   G + ++ ++      G 
Sbjct: 173 IKLLGEPLDKRSYGSMIMAYIRAGMPEEGENLLQQMEAQEILAGSEIYKALLRAYSMIGN 232

Query: 553 LQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQ 589
            + AQRV   ++  G    +++   L+++     Q Q
Sbjct: 233 AEGAQRVFDAIQLAGITPDDKICSLLVNAYAMAGQSQ 269


>gi|449433119|ref|XP_004134345.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g01970-like [Cucumis sativus]
 gi|449480346|ref|XP_004155867.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g01970-like [Cucumis sativus]
          Length = 404

 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 126/333 (37%), Positives = 195/333 (58%), Gaps = 1/333 (0%)

Query: 164 KWTEVAEKIHERGEMILPEEPKPITGKCKLITDKILSLEKEE-DPSPLLAEWKELLQPSR 222
           +W EV   I E  +  + + P  +T +CK +  +I+    ++ + S +LA W  +++P R
Sbjct: 67  RWVEVGYDITETQKQAISQLPPKMTKRCKAVMKQIICFSPQKGELSDMLAAWVRIMKPER 126

Query: 223 IDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKK 282
            DW+ +L  LR  N  LY +VAE  L E +F+ N RDY+K+I  + K+N LEDAE++L  
Sbjct: 127 ADWLLVLKHLRILNHPLYIQVAEAALEEITFEANTRDYTKIIHHYGKQNQLEDAEKVLLS 186

Query: 283 MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
           M E G V D +T T ++H+YSKA  L+ AK+ FE L+      DK+ + +MIMAYV AG 
Sbjct: 187 MRERGFVCDQITLTTMIHIYSKADKLNLAKQTFEELKLLEQPLDKRSFGAMIMAYVRAGF 246

Query: 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402
           P+ G  ++  M    I    E+Y ALLR+++  G+  GA ++ + +++    P  + C L
Sbjct: 247 PEEGEKILKEMDAKDIYAGSEVYKALLRAYSMVGNAEGAQRVFDAIQLAAITPDEKLCGL 306

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           L+ AY  AG   +A+  FD M R G +P D+C A  ++AY K+N L+ AL LL++LEKD 
Sbjct: 307 LINAYLMAGQSREAQIAFDNMRRAGIEPSDKCIALALSAYEKENRLNSALELLIDLEKDN 366

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
              G     +L  WL RL ++ E E +L + +E
Sbjct: 367 VMVGKEASKILAAWLKRLGVVEEVEIVLREYTE 399



 Score = 43.1 bits (100), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 70/152 (46%), Gaps = 2/152 (1%)

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           + R    +I  YGK+N L+ A  +LL + + GF     T T ++    +   +N A+Q  
Sbjct: 160 NTRDYTKIIHHYGKQNQLEDAEKVLLSMRERGFVCDQITLTTMIHIYSKADKLNLAKQTF 219

Query: 491 GKISELGEAPPFKIQVSLCDM-YARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLA 549
            ++ +L E P  K       M Y RAG  ++  + L  ++AK    G + ++ ++     
Sbjct: 220 EEL-KLLEQPLDKRSFGAMIMAYVRAGFPEEGEKILKEMDAKDIYAGSEVYKALLRAYSM 278

Query: 550 GGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
            G  + AQRV   ++       E+L   LI++
Sbjct: 279 VGNAEGAQRVFDAIQLAAITPDEKLCGLLINA 310


>gi|356568284|ref|XP_003552343.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g01970-like [Glycine max]
          Length = 414

 Score =  235 bits (600), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 123/328 (37%), Positives = 195/328 (59%), Gaps = 1/328 (0%)

Query: 164 KWTEVAEKIHERGEMILPEEPKPITGKCKLITDKILSLEKEEDP-SPLLAEWKELLQPSR 222
           +W EV + + +  +  + + P  +  +CK +  +I+    E+   S LL  W +L++P+R
Sbjct: 77  RWIEVGKNVPKEQQQAISKLPFRMADRCKALMRQIICYSAEKGSMSDLLRSWVKLMKPTR 136

Query: 223 IDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKK 282
            DW+++L  L+ +   +Y +VA+  L EESF+ N+RDY+K+I  + + N LEDAE+ L  
Sbjct: 137 ADWLSVLKELKIREHPVYLEVAKHALMEESFEVNIRDYTKIIHYYGEHNLLEDAEKFLTL 196

Query: 283 MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
           M + G + D V  T +VHMYSKAGN DRAKE FE ++  G   DK+ Y SMIMAY+ AG 
Sbjct: 197 MKQRGFIYDQVILTTMVHMYSKAGNHDRAKEYFEEIKLLGKPLDKRSYGSMIMAYIRAGM 256

Query: 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402
           P+ G +L+  M    I    E+Y ALLR+++  G+  GA ++ + +++    P  + C+L
Sbjct: 257 PEEGENLLQEMEAQEILAGSEVYKALLRAYSMIGNAEGAQRVFDAIQLAGITPDDKICSL 316

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           +V AY  AG   +A   F+ M R G KP D+C AS++ AY K++ ++ AL  L++LE+DG
Sbjct: 317 VVNAYVMAGQSQKALIAFENMRRAGIKPSDKCIASVLVAYEKESKINTALEFLIDLERDG 376

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLL 490
                    VL  W  +L ++ E E +L
Sbjct: 377 IMVEEEASAVLAKWFRKLGVVEEVELVL 404



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 2/175 (1%)

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
           Y  ++  + +   +  A +   +M+   F       T +V  Y +AG+ D+A+  F+ + 
Sbjct: 174 YTKIIHYYGEHNLLEDAEKFLTLMKQRGFIYDQVILTTMVHMYSKAGNHDRAKEYFEEIK 233

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
            LG   D R   SMI AY +  + ++  NLL E+E      G   Y  L+     +    
Sbjct: 234 LLGKPLDKRSYGSMIMAYIRAGMPEEGENLLQEMEAQEILAGSEVYKALLRAYSMIGNAE 293

Query: 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD 539
            A+++   I   G  P  KI   + + Y  AG  +KAL  + F   ++  + P D
Sbjct: 294 GAQRVFDAIQLAGITPDDKICSLVVNAYVMAGQSQKAL--IAFENMRRAGIKPSD 346



 Score = 39.7 bits (91), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 34/157 (21%), Positives = 70/157 (44%)

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
           R    +I  YG+ NLL+ A   L  +++ GF       T +V    +    + A++   +
Sbjct: 172 RDYTKIIHYYGEHNLLEDAEKFLTLMKQRGFIYDQVILTTMVHMYSKAGNHDRAKEYFEE 231

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
           I  LG+    +   S+   Y RAG+ ++    L  +EA++   G + ++ ++      G 
Sbjct: 232 IKLLGKPLDKRSYGSMIMAYIRAGMPEEGENLLQEMEAQEILAGSEVYKALLRAYSMIGN 291

Query: 553 LQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQ 589
            + AQRV   ++  G    +++   ++++     Q Q
Sbjct: 292 AEGAQRVFDAIQLAGITPDDKICSLVVNAYVMAGQSQ 328


>gi|296089159|emb|CBI38862.3| unnamed protein product [Vitis vinifera]
          Length = 353

 Score =  233 bits (595), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 136/341 (39%), Positives = 200/341 (58%), Gaps = 2/341 (0%)

Query: 164 KWTEVAEKIHERGEMILPEEPKPITGKCKLITDKILSLEKEEDP-SPLLAEWKELLQPSR 222
           KW E+   I E  +M + +    +T +CK +  +I+    EE   S LLA W ++++P R
Sbjct: 10  KWIEIGPNITEAQKMTISQISLKMTKRCKALVKQIICFSPEERSLSDLLAAWVKIMKPRR 69

Query: 223 IDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKK 282
            DW+++L  L   +  L  +VAEL L EESF+ N+RDY+K+ID + K+N L+DAE  L  
Sbjct: 70  ADWLSVLKELGRLDHPLLLEVAELALLEESFEANIRDYTKIIDGYGKQNRLQDAENTLSA 129

Query: 283 MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
           M   G + D VT T +++MYSKAGNL+ A++ FE ++  G   DK+ Y SMIMAY+ AG 
Sbjct: 130 MKRRGFICDQVTLTAMINMYSKAGNLELAEKTFEEIKLLGHPLDKRSYGSMIMAYIRAGM 189

Query: 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402
           P  G  LV  M    I    E+Y ALLR+++   D  GA ++ + ++     P ++ C L
Sbjct: 190 PDQGEILVKEMEAKEIYAGREVYKALLRAYSNTSDAEGAQRVFDAIQFAGISPDVKLCAL 249

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           L+ AY  AG   +A   F+ M R G KP+D+  A M+AAY K+N L+KAL+ L++LE+DG
Sbjct: 250 LINAYRVAGQTQKAHVAFENMRRSGLKPNDKSIALMLAAYEKENKLNKALDFLIDLERDG 309

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFK 503
              G     +L  W  RL ++ E E +L + S   EA  FK
Sbjct: 310 IVLGKEASELLAAWFQRLGVVKEVELVLREYSA-KEASWFK 349



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 75/175 (42%), Gaps = 2/175 (1%)

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
           Y  ++  + +   ++ A    + M+   F     + T ++  Y +AG+ + A   F+ + 
Sbjct: 107 YTKIIDGYGKQNRLQDAENTLSAMKRRGFICDQVTLTAMINMYSKAGNLELAEKTFEEIK 166

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
            LGH  D R   SMI AY +  + D+   L+ E+E      G   Y  L+          
Sbjct: 167 LLGHPLDKRSYGSMIMAYIRAGMPDQGEILVKEMEAKEIYAGREVYKALLRAYSNTSDAE 226

Query: 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD 539
            A+++   I   G +P  K+   L + Y  AG  +KA   + F   ++  + P+D
Sbjct: 227 GAQRVFDAIQFAGISPDVKLCALLINAYRVAGQTQKA--HVAFENMRRSGLKPND 279



 Score = 42.7 bits (99), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 69/157 (43%)

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
           R    +I  YGK+N L  A N L  +++ GF     T T +++   +   +  AE+   +
Sbjct: 105 RDYTKIIDGYGKQNRLQDAENTLSAMKRRGFICDQVTLTAMINMYSKAGNLELAEKTFEE 164

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
           I  LG     +   S+   Y RAG+  +    +  +EAK+   G + ++ ++        
Sbjct: 165 IKLLGHPLDKRSYGSMIMAYIRAGMPDQGEILVKEMEAKEIYAGREVYKALLRAYSNTSD 224

Query: 553 LQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQ 589
            + AQRV   ++  G +   +L   LI++     Q Q
Sbjct: 225 AEGAQRVFDAIQFAGISPDVKLCALLINAYRVAGQTQ 261


>gi|225453925|ref|XP_002273719.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g01970-like [Vitis vinifera]
          Length = 352

 Score =  232 bits (591), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 132/332 (39%), Positives = 196/332 (59%), Gaps = 1/332 (0%)

Query: 164 KWTEVAEKIHERGEMILPEEPKPITGKCKLITDKILSLEKEEDP-SPLLAEWKELLQPSR 222
           KW E+   I E  +M + +    +T +CK +  +I+    EE   S LLA W ++++P R
Sbjct: 10  KWIEIGPNITEAQKMTISQISLKMTKRCKALVKQIICFSPEERSLSDLLAAWVKIMKPRR 69

Query: 223 IDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKK 282
            DW+++L  L   +  L  +VAEL L EESF+ N+RDY+K+ID + K+N L+DAE  L  
Sbjct: 70  ADWLSVLKELGRLDHPLLLEVAELALLEESFEANIRDYTKIIDGYGKQNRLQDAENTLSA 129

Query: 283 MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
           M   G + D VT T +++MYSKAGNL+ A++ FE ++  G   DK+ Y SMIMAY+ AG 
Sbjct: 130 MKRRGFICDQVTLTAMINMYSKAGNLELAEKTFEEIKLLGHPLDKRSYGSMIMAYIRAGM 189

Query: 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402
           P  G  LV  M    I    E+Y ALLR+++   D  GA ++ + ++     P ++ C L
Sbjct: 190 PDQGEILVKEMEAKEIYAGREVYKALLRAYSNTSDAEGAQRVFDAIQFAGISPDVKLCAL 249

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           L+ AY  AG   +A   F+ M R G KP+D+  A M+AAY K+N L+KAL+ L++LE+DG
Sbjct: 250 LINAYRVAGQTQKAHVAFENMRRSGLKPNDKSIALMLAAYEKENKLNKALDFLIDLERDG 309

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
              G     +L  W  RL ++ E E +L + S
Sbjct: 310 IVLGKEASELLAAWFQRLGVVKEVELVLREYS 341



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 75/175 (42%), Gaps = 2/175 (1%)

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
           Y  ++  + +   ++ A    + M+   F     + T ++  Y +AG+ + A   F+ + 
Sbjct: 107 YTKIIDGYGKQNRLQDAENTLSAMKRRGFICDQVTLTAMINMYSKAGNLELAEKTFEEIK 166

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
            LGH  D R   SMI AY +  + D+   L+ E+E      G   Y  L+          
Sbjct: 167 LLGHPLDKRSYGSMIMAYIRAGMPDQGEILVKEMEAKEIYAGREVYKALLRAYSNTSDAE 226

Query: 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD 539
            A+++   I   G +P  K+   L + Y  AG  +KA   + F   ++  + P+D
Sbjct: 227 GAQRVFDAIQFAGISPDVKLCALLINAYRVAGQTQKA--HVAFENMRRSGLKPND 279



 Score = 43.1 bits (100), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 69/157 (43%)

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
           R    +I  YGK+N L  A N L  +++ GF     T T +++   +   +  AE+   +
Sbjct: 105 RDYTKIIDGYGKQNRLQDAENTLSAMKRRGFICDQVTLTAMINMYSKAGNLELAEKTFEE 164

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
           I  LG     +   S+   Y RAG+  +    +  +EAK+   G + ++ ++        
Sbjct: 165 IKLLGHPLDKRSYGSMIMAYIRAGMPDQGEILVKEMEAKEIYAGREVYKALLRAYSNTSD 224

Query: 553 LQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQ 589
            + AQRV   ++  G +   +L   LI++     Q Q
Sbjct: 225 AEGAQRVFDAIQFAGISPDVKLCALLINAYRVAGQTQ 261


>gi|297848306|ref|XP_002892034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297337876|gb|EFH68293.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 409

 Score =  219 bits (557), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 121/337 (35%), Positives = 184/337 (54%), Gaps = 1/337 (0%)

Query: 165 WTEVAEKIHERGEMILPEEPKPITGKCKLITDKILSLEKEEDP-SPLLAEWKELLQPSRI 223
           W +V   + E  +  +   P  ++ +C+ +  +I+    E+     LL  W   + P R 
Sbjct: 72  WVDVGLDLTEEQDEAITRIPIKMSKRCQALMRQIICFSSEKGSFCDLLGAWVRRMNPIRA 131

Query: 224 DWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKM 283
           DW+++L  L+  ++  Y KVAE  L E+SF+ N RDY+K+I  + K N +EDAER L  M
Sbjct: 132 DWLSILKELKNLDSPFYIKVAEFSLLEDSFEANARDYTKIIHYYGKLNQVEDAERTLLSM 191

Query: 284 NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343
              G + D VT T +V +YSKAG    A+E F  ++  G   D + Y SMIMAY+ AG P
Sbjct: 192 KNRGFLIDQVTLTAIVQLYSKAGYHKLAEETFNEIKLIGEPLDNRSYGSMIMAYIRAGAP 251

Query: 344 KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403
           + G +L+  M +  I    E+Y ALLR+++  GD  GA ++ + ++I    P ++ C LL
Sbjct: 252 EKGEALLREMDSQEICAGREVYKALLRAYSMGGDAEGAKRVFDAVQIAGITPDVKLCGLL 311

Query: 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGF 463
           + AY  +G    AR  F+ M + G K  D+C A ++AAY K+  L++AL  L+ELEKD  
Sbjct: 312 INAYSVSGQSQNARLAFENMRKAGIKATDKCVALVLAAYEKEEKLNEALGFLVELEKDSI 371

Query: 464 EPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
             G     VL  W  +L ++ E E LL + S     P
Sbjct: 372 MVGKEASAVLAQWFKKLGVVEEVELLLREFSSSQSQP 408



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 70/155 (45%)

Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           +I  YGK N ++ A   LL ++  GF     T T +V    +      AE+   +I  +G
Sbjct: 171 IIHYYGKLNQVEDAERTLLSMKNRGFLIDQVTLTAIVQLYSKAGYHKLAEETFNEIKLIG 230

Query: 498 EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQ 557
           E    +   S+   Y RAG  +K    L  +++++   G + ++ ++     GG  + A+
Sbjct: 231 EPLDNRSYGSMIMAYIRAGAPEKGEALLREMDSQEICAGREVYKALLRAYSMGGDAEGAK 290

Query: 558 RVHGLMEAQGFAASERLKVALISSQTFNRQRQPTR 592
           RV   ++  G     +L   LI++ + + Q Q  R
Sbjct: 291 RVFDAVQIAGITPDVKLCGLLINAYSVSGQSQNAR 325


>gi|15217583|ref|NP_171699.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75264110|sp|Q9LPC4.1|PPR1_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g01970
 gi|8570448|gb|AAF76475.1|AC020622_9 Contains similarity to an unknown protein gi|AAD26479 from
           Arabidopsis thaliana BAC gb|AC007169 and contains
           multiple PPR PF|01535 repeats [Arabidopsis thaliana]
 gi|34098825|gb|AAQ56795.1| At1g01970 [Arabidopsis thaliana]
 gi|110735700|dbj|BAE99830.1| hypothetical protein [Arabidopsis thaliana]
 gi|332189240|gb|AEE27361.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 409

 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 121/337 (35%), Positives = 183/337 (54%), Gaps = 1/337 (0%)

Query: 165 WTEVAEKIHERGEMILPEEPKPITGKCKLITDKILSLEKEEDP-SPLLAEWKELLQPSRI 223
           W +V   + E  +  +   P  ++ +C+ +  +I+    E+     LL  W   + P R 
Sbjct: 72  WADVGLNLTEEQDEAITRIPIKMSKRCQALMRQIICFSPEKGSFCDLLGAWLRRMNPIRA 131

Query: 224 DWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKM 283
           DW+++L  L+  ++  Y KVAE  L ++SF+ N RDY+K+I  + K N +EDAER L  M
Sbjct: 132 DWLSILKELKNLDSPFYIKVAEFSLLQDSFEANARDYTKIIHYYGKLNQVEDAERTLLSM 191

Query: 284 NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343
              G + D VT T +V +YSKAG    A+E F  ++  G   D + Y SMIMAY+ AG P
Sbjct: 192 KNRGFLIDQVTLTAMVQLYSKAGCHKLAEETFNEIKLLGEPLDYRSYGSMIMAYIRAGVP 251

Query: 344 KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403
           + G SL+  M +  I    E+Y ALLR ++  GD  GA ++ + ++I    P ++ C LL
Sbjct: 252 EKGESLLREMDSQEICAGREVYKALLRDYSMGGDAEGAKRVFDAVQIAGITPDVKLCGLL 311

Query: 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGF 463
           + AY  +G    AR  F+ M + G K  D+C A ++AAY K+  L++AL  L+ELEKD  
Sbjct: 312 INAYSVSGQSQNARLAFENMRKAGIKATDKCVALVLAAYEKEEKLNEALGFLVELEKDSI 371

Query: 464 EPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
             G     VL  W  +L ++ E E LL + S     P
Sbjct: 372 MLGKEASAVLAQWFKKLGVVEEVELLLREFSSSQSQP 408



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 72/155 (46%)

Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           +I  YGK N ++ A   LL ++  GF     T T +V    +      AE+   +I  LG
Sbjct: 171 IIHYYGKLNQVEDAERTLLSMKNRGFLIDQVTLTAMVQLYSKAGCHKLAEETFNEIKLLG 230

Query: 498 EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQ 557
           E   ++   S+   Y RAG+ +K    L  +++++   G + ++ ++     GG  + A+
Sbjct: 231 EPLDYRSYGSMIMAYIRAGVPEKGESLLREMDSQEICAGREVYKALLRDYSMGGDAEGAK 290

Query: 558 RVHGLMEAQGFAASERLKVALISSQTFNRQRQPTR 592
           RV   ++  G     +L   LI++ + + Q Q  R
Sbjct: 291 RVFDAVQIAGITPDVKLCGLLINAYSVSGQSQNAR 325


>gi|357121606|ref|XP_003562509.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g01970-like [Brachypodium distachyon]
          Length = 440

 Score =  201 bits (512), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 121/342 (35%), Positives = 186/342 (54%), Gaps = 13/342 (3%)

Query: 150 KIKYKIYGLDLSDPKWTEVAEKIHERGEMILPEEPKPITGKCKLITDKILSLEK-EEDPS 208
           + ++   G DLS+P+            E I    PK +  +C+ +  +I+SL   +E+  
Sbjct: 58  RFRWNGLGSDLSEPQ-----------EEAIRGLSPK-LPNRCRALMPRIVSLSPGDENLG 105

Query: 209 PLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHA 268
             LA W + + P R+DW+ +L  L+  ++ L  +V E  L E+SF+ NVRDY+KL+  + 
Sbjct: 106 MALAFWAKAMNPRRVDWLLVLKELKAVDSTLLAEVLEYALLEDSFEANVRDYTKLVQIYG 165

Query: 269 KENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKK 328
           K+N L++AE+  + M   G+  D +  T LV MYSKAG+L RAKEAFE +   G   DK+
Sbjct: 166 KQNQLQEAEKAFRAMKARGLPCDQIMLTALVDMYSKAGDLTRAKEAFEDIVMLGLPLDKR 225

Query: 329 VYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIM 388
            Y SMIMAY+ A +      L+       I   +E+Y ALLR+++  GD  GA ++ + +
Sbjct: 226 AYGSMIMAYIRADKLGQAEDLIKQTEDQEIFAGKEVYKALLRAYSYKGDSDGAQRVFDAV 285

Query: 389 RIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLL 448
           +     P  + C LLV AY  +   D+A      M   G +P DRC   ++ AY K N L
Sbjct: 286 QFAGTAPDTKLCALLVNAYCLSNKIDEAICVTGNMRSAGLEPCDRCVVLILGAYEKANRL 345

Query: 449 DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           + AL  L E+E++G   G     +L  W GRL +++E EQ+L
Sbjct: 346 EGALEFLAEIEENGAVIGQEPSQLLAGWFGRLGVVHEVEQVL 387


>gi|326495326|dbj|BAJ85759.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 454

 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 114/331 (34%), Positives = 177/331 (53%), Gaps = 1/331 (0%)

Query: 164 KWTEVAEKIHERGEMILPEEPKPITGKCKLITDKILSLEK-EEDPSPLLAEWKELLQPSR 222
           +W E+   + +  E  +      +  +C+ +  +++SL   +E+   +LA W + ++P R
Sbjct: 58  RWDELGTGLSDPQEQAMRGLSPKLPNRCRALMPRVVSLSPGDENLGVVLAFWVKAMKPKR 117

Query: 223 IDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKK 282
            DW+ +L  L    + L  +V E VL E+SF+ NVRDY+KLI  + K+N L +AE     
Sbjct: 118 ADWLLVLKELMAMESPLLAEVLEYVLLEDSFEANVRDYTKLIQIYGKQNLLREAEEAFHA 177

Query: 283 MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
           M   G+  D V  T LV MYSKAG+L RAKE F+ +   G   DK+ Y SMIMAY+ A  
Sbjct: 178 MKARGLPCDQVMLTALVDMYSKAGDLTRAKETFKEIVLLGLPLDKRAYGSMIMAYIRADM 237

Query: 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402
                 L+       +   +E+Y ALLR+++  GD  GA ++ + ++     P  + C L
Sbjct: 238 LDQADDLIKQTEDQQVFAGKEVYKALLRAYSYRGDSEGAQRVFDAVQFAGTVPDTKLCAL 297

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           LV AY  +   D+A      M   G +P DRC A ++ AY   + L+ AL  L ELE++G
Sbjct: 298 LVNAYCLSNRIDEAVCVTRNMRSAGLEPCDRCVALILGAYENADRLEGALEFLAELEENG 357

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
              G     +L  W GRL +++E EQ+L ++
Sbjct: 358 VVIGQEPSQLLAAWFGRLGVVHEVEQVLEEV 388


>gi|242051194|ref|XP_002463341.1| hypothetical protein SORBIDRAFT_02g042040 [Sorghum bicolor]
 gi|241926718|gb|EER99862.1| hypothetical protein SORBIDRAFT_02g042040 [Sorghum bicolor]
          Length = 405

 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 115/346 (33%), Positives = 178/346 (51%), Gaps = 3/346 (0%)

Query: 164 KWTEVAEKIHERGEMILPEEPKPITGKCKLITDKILSL-EKEEDPSPLLAEWKELLQPSR 222
           +W     ++ E  +  +      +  +CK +  +++ L   +E    LLA W + ++P R
Sbjct: 58  RWDAFGSEMSESQQRAVRGLSPKLPNRCKALVARVVCLCPGDESLGALLAYWVKAMKPKR 117

Query: 223 IDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKK 282
            DW+ +L  L+   + L  +V +  L E SF+ NVRDY+KLI  + K+  L+ AE     
Sbjct: 118 ADWLLVLKELKAMESPLLAEVLQHALLENSFEANVRDYTKLIHIYGKQKLLQKAEDAFAA 177

Query: 283 MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
           M   G   D V  T L+ MYSKAG+L RAKE F  +   G   DK+ Y SMIMAY+ A  
Sbjct: 178 MKGRGFPCDQVMLTALMDMYSKAGDLTRAKEIFREIVLLGLPLDKRAYGSMIMAYIRADM 237

Query: 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402
            +    L+  M    +   +E+Y ALLR+++  GD  GA +I + ++     P  + C L
Sbjct: 238 LQEAEGLIKEMEDQQMFAGKEVYKALLRAYSYRGDSDGAQRIFDAIQFAGIVPDTKLCAL 297

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           LV AY  +   D+A      M   G KP D+C A ++ AY K N+L+ AL  L ELE+ G
Sbjct: 298 LVNAYCLSNRIDEAVCVIRNMRCAGVKPCDKCIALVLGAYEKVNMLETALEFLTELEEKG 357

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKIS--ELGEAPPFKIQV 506
              G     +L  W  +L +++E EQ+L  +S  ++   P F + +
Sbjct: 358 VSIGQEPSQLLAAWFRKLGVVHEVEQVLKDLSSEDMTSKPSFAVSL 403


>gi|115529193|dbj|BAF34329.1| pentatricopeptide repeat protein [Physcomitrella patens]
 gi|115529195|dbj|BAF34330.1| pentatricopeptide repeat protein [Physcomitrella patens]
          Length = 513

 Score =  184 bits (468), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 116/374 (31%), Positives = 197/374 (52%), Gaps = 10/374 (2%)

Query: 211 LAEWKELLQPSRIDWINLLDRLREQNTQL-YFKVAELVLSEESFQTNVRDYSKLIDAHAK 269
           L +W   +QP+R DW+ +L     +  +L Y K+ E  L +  F+  VRDY+KLID + +
Sbjct: 126 LQKWVTSMQPNRKDWLTVLKEFDNRLERLLYLKIFEWGLLQSWFEAGVRDYTKLIDKYGR 185

Query: 270 ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKV 329
           E  + +AE++ + M E GI  D+   TVL+  Y +A  L++ K+  + +   G + D   
Sbjct: 186 EGNVVEAEQMFRIMEERGIPADLGAFTVLIAAYGRAKMLEKVKQVLQDVSLAGLELDAVF 245

Query: 330 YNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389
           Y ++I+AY + G PK    ++  M ++G+   ++ YLALL ++ + G    A ++ + M 
Sbjct: 246 YKTVIVAYGSVGMPKEAEDVLSSMESAGVPDGKDAYLALLNAYGRLGHASDAQRVFDRMH 305

Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD 449
           ++ F+  L++ T L+EAY  A D   A   F  +   G KPDDR  ASM++ Y K N+L+
Sbjct: 306 LKGFRGDLKAFTALLEAYSNAQDYANAELVFQSLRAAGLKPDDRALASMVSVYAKANMLN 365

Query: 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLC 509
           +A  +++ELE  G   GP T T L+ W G+  L+ EA+    ++         K   ++ 
Sbjct: 366 RAAEVIVELEGAGMRFGPVTLTSLIGWFGKAGLVEEAKHCFQELKRKRLPISGKAYANMF 425

Query: 510 DMYARAGIEKKALQALGFLEAKKEQMGPDDFER----IINGLLAGGFL-QDAQRVHGLME 564
             YARAG     L+  G + A  E+ G +   R    +   LLAG    Q  +     ++
Sbjct: 426 AAYARAG----ELETAGSIWASIEEAGIELDHRECAVMAEALLAGKVHEQSVEIFFEALQ 481

Query: 565 AQGFAASERLKVAL 578
           A+G+ +   ++VA+
Sbjct: 482 ARGWKSLTAVEVAV 495



 Score = 45.4 bits (106), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 66/146 (45%)

Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           +I  YG++  + +A  +   +E+ G       +TVL+   GR +++ + +Q+L  +S  G
Sbjct: 179 LIDKYGREGNVVEAEQMFRIMEERGIPADLGAFTVLIAAYGRAKMLEKVKQVLQDVSLAG 238

Query: 498 EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQ 557
                    ++   Y   G+ K+A   L  +E+     G D +  ++N     G   DAQ
Sbjct: 239 LELDAVFYKTVIVAYGSVGMPKEAEDVLSSMESAGVPDGKDAYLALLNAYGRLGHASDAQ 298

Query: 558 RVHGLMEAQGFAASERLKVALISSQT 583
           RV   M  +GF    +   AL+ + +
Sbjct: 299 RVFDRMHLKGFRGDLKAFTALLEAYS 324


>gi|115473887|ref|NP_001060542.1| Os07g0661900 [Oryza sativa Japonica Group]
 gi|24414184|dbj|BAC22426.1| pentatricopeptide (PPR)repeat-containing protein-like [Oryza sativa
           Japonica Group]
 gi|113612078|dbj|BAF22456.1| Os07g0661900 [Oryza sativa Japonica Group]
 gi|215697327|dbj|BAG91321.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 440

 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 118/353 (33%), Positives = 180/353 (50%), Gaps = 20/353 (5%)

Query: 150 KIKYKIYGLDLSDPKWTEVAEKIHERGEMILPEEPKPITGKCKLITDKILSL-------- 201
           + ++  +G   S+P+W  +      RG  + P+ P     +C+ +  +++ L        
Sbjct: 61  RFRWDTFGSAPSEPQWEAI------RG--LSPKLP----NRCRALMARLVCLPPPDQDGD 108

Query: 202 EKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYS 261
           E EE    LL  W + ++P R DW+ +L  L    + L  +V E  L E+SF+ NVRDY+
Sbjct: 109 EDEETLGALLVFWVKAMKPKRTDWLLVLKELTAMESPLLAEVLEHALLEDSFEANVRDYT 168

Query: 262 KLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSH 321
           KLI  + K+  L+ AE     M   G+  D V  T L+ MYSKAG+L RAKE F  +   
Sbjct: 169 KLIHIYGKQKLLQKAEDAFHAMKSRGLPCDQVMLTALMDMYSKAGDLTRAKEIFNEIGLL 228

Query: 322 GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGA 381
           G   DK+VY SMIMAY+ A        ++  M    I   +E+Y ALLR+++  GD  GA
Sbjct: 229 GLPMDKRVYGSMIMAYIRADMLDKAEDMISEMGDQQIVAGKEVYKALLRAYSYKGDSEGA 288

Query: 382 GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441
            ++ + ++     P  + C LLV AY  A   ++A      M      P ++C A ++ A
Sbjct: 289 QRVFDAIQFAGIVPDTKLCALLVNAYCLADRINEAMIVTRNMRSARITPCNKCIALILGA 348

Query: 442 YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
           Y K N L+ AL  L ELE++G   G     +L  WL RL ++ E EQ+L  ++
Sbjct: 349 YEKVNRLEGALAFLTELEENGVIIGQEPSQLLAGWLRRLGVVQEVEQVLKDLA 401


>gi|168060335|ref|XP_001782152.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666390|gb|EDQ53046.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 281

 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 94/276 (34%), Positives = 156/276 (56%), Gaps = 1/276 (0%)

Query: 214 WKELLQPSRIDWINLLDRLREQNTQL-YFKVAELVLSEESFQTNVRDYSKLIDAHAKENC 272
           W   +QP+R DW+ +L     +  +L Y K+ E  L +  F+  VRDY+KLID + +E  
Sbjct: 1   WVTSMQPNRKDWLTVLKEFDNRLERLLYLKIFEWGLLQSWFEAGVRDYTKLIDKYGREGN 60

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           + +AE++ + M E GI  D+   TVL+  Y +A  L++ K+  + +   G + D   Y +
Sbjct: 61  VVEAEQMFRIMEERGIPADLGAFTVLIAAYGRAKMLEKVKQVLQDVSLAGLELDAVFYKT 120

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I+AY + G PK    ++  M ++G+   ++ YLALL ++ + G    A ++ + M ++ 
Sbjct: 121 VIVAYGSVGMPKEAEDVLSSMESAGVPDGKDAYLALLNAYGRLGHASDAQRVFDRMHLKG 180

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
           F+  L++ T L+EAY  A D   A   F  +   G KPDDR  ASM++ Y K N+L++A 
Sbjct: 181 FRGDLKAFTALLEAYSNAQDYANAELVFQSLRAAGLKPDDRALASMVSVYAKANMLNRAA 240

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQ 488
            +++ELE  G   GP T T L+ W G+  L+ EA+ 
Sbjct: 241 EVIVELEGAGMRFGPVTLTSLIGWFGKAGLVEEAKH 276



 Score = 47.0 bits (110), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 69/173 (39%), Gaps = 19/173 (10%)

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
           F+  +   T L++ YG+ G+  +A   F  M   G   D      +IAAYG+  +L+K  
Sbjct: 41  FEAGVRDYTKLIDKYGREGNVVEAEQMFRIMEERGIPADLGAFTVLIAAYGRAKMLEKVK 100

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
            +L ++   G E     Y  ++   G + +  EAE +L  +   G        ++L + Y
Sbjct: 101 QVLQDVSLAGLELDAVFYKTVIVAYGSVGMPKEAEDVLSSMESAGVPDGKDAYLALLNAY 160

Query: 513 ARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEA 565
            R G                      D +R+ + +   GF  D +    L+EA
Sbjct: 161 GRLG-------------------HASDAQRVFDRMHLKGFRGDLKAFTALLEA 194



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 67/151 (44%)

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
           R    +I  YG++  + +A  +   +E+ G       +TVL+   GR +++ + +Q+L  
Sbjct: 46  RDYTKLIDKYGREGNVVEAEQMFRIMEERGIPADLGAFTVLIAAYGRAKMLEKVKQVLQD 105

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
           +S  G         ++   Y   G+ K+A   L  +E+     G D +  ++N     G 
Sbjct: 106 VSLAGLELDAVFYKTVIVAYGSVGMPKEAEDVLSSMESAGVPDGKDAYLALLNAYGRLGH 165

Query: 553 LQDAQRVHGLMEAQGFAASERLKVALISSQT 583
             DAQRV   M  +GF    +   AL+ + +
Sbjct: 166 ASDAQRVFDRMHLKGFRGDLKAFTALLEAYS 196


>gi|212276115|ref|NP_001130199.1| hypothetical protein [Zea mays]
 gi|194688524|gb|ACF78346.1| unknown [Zea mays]
 gi|194705182|gb|ACF86675.1| unknown [Zea mays]
 gi|414887996|tpg|DAA64010.1| TPA: hypothetical protein ZEAMMB73_315638 [Zea mays]
          Length = 413

 Score =  178 bits (451), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 121/384 (31%), Positives = 195/384 (50%), Gaps = 17/384 (4%)

Query: 126 GKAAAECAEVEEKPKVITLPKRHGKIKYKIYGLDLSDPKWTEVAEKIHERGEMILPEEPK 185
           G+ +A   E E +  V++  K   + ++  +G DL+ P+         +R   +L   PK
Sbjct: 41  GELSALAPEAEAEQAVVSEVK--PRFRWDAFGSDLTGPQ---------QRAVRVL--SPK 87

Query: 186 PITGKCKLITDKILSLEK-EEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVA 244
            +  +CK +  +++ L   +E    LLA W + ++P R DW+ +L  L+   + L  +V 
Sbjct: 88  -LPNRCKALVARVVCLSPGDERLGALLAYWVKAMKPKRADWLLVLKELKAMESPLLAEVL 146

Query: 245 ELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK 304
           E  L E SF+ NVRDY+KLI  + K+  L+ AE     M   G   D V  T L+ M+SK
Sbjct: 147 EHALLENSFEANVRDYTKLIHIYGKQKRLQKAEDAFAAMKGRGFPCDQVMLTALMDMHSK 206

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
           AG+L RAKE F  +   G   DK+ Y SM+MAYV A        L+       +   +E+
Sbjct: 207 AGDLARAKEIFGEIVLLGLPLDKRAYGSMVMAYVRADMLPEAEDLIKETEEQQVFAGKEV 266

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
           Y ALLR+++  GD  GA ++ + ++     P  + C LLV AY  +   ++A      M 
Sbjct: 267 YKALLRAYSYRGDPDGAQRVFDAVQFAGIVPDTKLCALLVNAYCLSDRIEEAVCVIRNMR 326

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
             G +P D+C A ++ A  K N+L+ AL  L ELE++G   G     +L  W  +L ++ 
Sbjct: 327 SAGVEPCDKCVALVLGACEKVNMLETALGFLTELEENGVSIGQEPSQLLAAWFRKLGVVR 386

Query: 485 EAEQLLGKIS--ELGEAPPFKIQV 506
           E +Q+L  +S  ++   P F + +
Sbjct: 387 EVDQVLKDLSSEDMTSRPSFAVSL 410


>gi|218200200|gb|EEC82627.1| hypothetical protein OsI_27214 [Oryza sativa Indica Group]
          Length = 347

 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 108/293 (36%), Positives = 155/293 (52%)

Query: 202 EKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYS 261
           E EE    LL  W + ++P R DW+ +L  L    + L  +V E  L E+SF+ NVRDY+
Sbjct: 16  EDEETLGALLVFWVKAMKPKRTDWLLVLKELTAMESPLLAEVLEHALLEDSFEANVRDYT 75

Query: 262 KLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSH 321
           KLI  + K+  L+ AE     M   G+  D V  T L+ MYSKAG+L RAKE F  +   
Sbjct: 76  KLIHIYGKQKLLQKAEDAFHAMKSRGLPCDQVMLTALMDMYSKAGDLTRAKEIFNEIGLL 135

Query: 322 GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGA 381
           G   DK+VY SMIMAY+ A        ++  M    I   +E+Y ALLR+++  GD  GA
Sbjct: 136 GLPMDKRVYGSMIMAYIRADMLDKAEDMISEMGDQQIVAGKEVYKALLRAYSYKGDSEGA 195

Query: 382 GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441
            ++ + ++     P  + C LLV AY  A   ++A      M      P ++C A ++ A
Sbjct: 196 QRVFDAIQFAGIVPDTKLCALLVNAYCLADRINEAMIVTRNMRSARITPCNKCIALILGA 255

Query: 442 YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
           Y K N L+ AL  L ELE++G   G     +L  WL RL ++ E EQ+L  ++
Sbjct: 256 YEKVNRLEGALAFLTELEENGVIIGQEPSQLLAGWLRRLGVVQEVEQVLKDLA 308


>gi|222637622|gb|EEE67754.1| hypothetical protein OsJ_25461 [Oryza sativa Japonica Group]
          Length = 350

 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 108/293 (36%), Positives = 155/293 (52%)

Query: 202 EKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYS 261
           E EE    LL  W + ++P R DW+ +L  L    + L  +V E  L E+SF+ NVRDY+
Sbjct: 16  EDEETLGALLVFWVKAMKPKRTDWLLVLKELTAMESPLLAEVLEHALLEDSFEANVRDYT 75

Query: 262 KLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSH 321
           KLI  + K+  L+ AE     M   G+  D V  T L+ MYSKAG+L RAKE F  +   
Sbjct: 76  KLIHIYGKQKLLQKAEDAFHAMKSRGLPCDQVMLTALMDMYSKAGDLTRAKEIFNEIGLL 135

Query: 322 GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGA 381
           G   DK+VY SMIMAY+ A        ++  M    I   +E+Y ALLR+++  GD  GA
Sbjct: 136 GLPMDKRVYGSMIMAYIRADMLDKAEDMISEMGDQQIVAGKEVYKALLRAYSYKGDSEGA 195

Query: 382 GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441
            ++ + ++     P  + C LLV AY  A   ++A      M      P ++C A ++ A
Sbjct: 196 QRVFDAIQFAGIVPDTKLCALLVNAYCLADRINEAMIVTRNMRSARITPCNKCIALILGA 255

Query: 442 YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
           Y K N L+ AL  L ELE++G   G     +L  WL RL ++ E EQ+L  ++
Sbjct: 256 YEKVNRLEGALAFLTELEENGVIIGQEPSQLLAGWLRRLGVVQEVEQVLKDLA 308


>gi|195619830|gb|ACG31745.1| hypothetical protein [Zea mays]
          Length = 413

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 120/384 (31%), Positives = 194/384 (50%), Gaps = 17/384 (4%)

Query: 126 GKAAAECAEVEEKPKVITLPKRHGKIKYKIYGLDLSDPKWTEVAEKIHERGEMILPEEPK 185
           G+ +A   E E +  V++  K   + ++  +G DL+ P         H+R    L   PK
Sbjct: 41  GELSALAPEAEAEQAVVSEVK--PRFRWDAFGSDLTGP---------HQRAFRGL--SPK 87

Query: 186 PITGKCKLITDKILSLEK-EEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVA 244
            +  +CK +  +++ L   +E    LLA W + ++P R DW+ +L  L+   + L  +V 
Sbjct: 88  -LPNRCKALVARVVCLSPGDERLGALLAYWVKAMKPKRADWLLVLKELKAMESPLLAEVL 146

Query: 245 ELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK 304
           E  L E SF+ NVRDY+KLI  + K+  L+ AE     M   G   D V  T L+ M+SK
Sbjct: 147 EHALLENSFEANVRDYTKLIHIYGKQKRLQKAEDAFAAMKGRGFPCDQVMLTALMDMHSK 206

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
           AG+L RAKE F  +   G   DK+ Y +M+MAY+ A        L+       +   +E+
Sbjct: 207 AGDLARAKEIFGEIVLLGLPLDKRAYGAMVMAYIRADMLPEAEDLIKETEEQQVFAGKEV 266

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
           Y ALLR+++  GD  GA ++ + ++     P  + C LLV AY  +   ++A      M 
Sbjct: 267 YKALLRAYSYRGDPDGAQRVFDAVQFAGIVPDTKLCALLVNAYCLSDRIEEAVCVIRNMR 326

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
             G +P D+C A ++ A  K N+L+ AL  L ELE++G   G     +L  W  +L ++ 
Sbjct: 327 SAGVEPCDKCVALVLGACEKVNMLETALGFLTELEENGVSIGQEPSLLLAAWFRKLGVVR 386

Query: 485 EAEQLLGKIS--ELGEAPPFKIQV 506
           E +Q+L  +S  ++   P F + +
Sbjct: 387 EVDQVLKDLSSEDMTSRPSFAVSL 410


>gi|326500598|dbj|BAJ94965.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 339

 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 97/252 (38%), Positives = 139/252 (55%)

Query: 242 KVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM 301
           +V E VL E+SF+ NVRDY+KLI  + K+N L +AE     M   G+  D V  T LV M
Sbjct: 22  EVLEYVLLEDSFEANVRDYTKLIQIYGKQNLLREAEEAFHAMKARGLPCDQVMLTALVDM 81

Query: 302 YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS 361
           YSKAG+L RAKE F+ +   G   DK+ Y SMIMAY+ A        L+       +   
Sbjct: 82  YSKAGDLTRAKETFKEIVLLGLPLDKRAYGSMIMAYIRADMLDQADDLIKQTEDQQVFAG 141

Query: 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421
           +E+Y ALLR+++  GD  GA ++ + ++     P  + C LLV AY  +   D+A     
Sbjct: 142 KEVYKALLRAYSYRGDSEGAQRVFDAVQFAGTVPDTKLCALLVNAYCLSNRIDEAVCVTR 201

Query: 422 YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ 481
            M   G +P DRC A ++ AY   + L+ AL  L ELE++G   G     +L  W GRL 
Sbjct: 202 NMRSAGLEPCDRCVALILGAYENADRLEGALEFLAELEENGVVIGQEPSQLLAAWFGRLG 261

Query: 482 LINEAEQLLGKI 493
           +++E EQ+L ++
Sbjct: 262 VVHEVEQVLEEV 273


>gi|255574497|ref|XP_002528160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532417|gb|EEF34211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 569

 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 96/359 (26%), Positives = 175/359 (48%), Gaps = 8/359 (2%)

Query: 194 ITDKILS-LEKEEDPSPLLAEWKEL--LQPSRIDWINLLDRLR-EQNTQLYFKVAELVLS 249
           I  +ILS ++KE DPS + A    L     +  D IN++ +LR  +   L   + + +L 
Sbjct: 81  IAQQILSFIQKEVDPSTVWAALDTLPATHETWDDLINVVVQLRLNKKWDLILLICQWILY 140

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
             SFQ++V  ++ +IDA+ +++  + AE    ++ E   +P   T  +L+  Y  +G L+
Sbjct: 141 RSSFQSDVMIFNLVIDAYGRKSLYKMAETTYFELIEARCIPTEDTYALLLKAYCTSGLLE 200

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
           +A+  F  +R +G  P   VYN+ I   + AG P+  + +   M     + S E Y  L+
Sbjct: 201 KAEAIFAEMRKYGLPPSAIVYNAYIDGLMKAGNPQRAVEIFQRMKRDCCQPSTETYTLLI 260

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               +      A ++ N MR ++ +P + + T LV A+ + G  ++A   F+ +   GH+
Sbjct: 261 NLHGKASQSYMALKLFNEMRSQKCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGHE 320

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     +++ AY +      A  +   ++  G EP  A+Y ++VD  GR  L  +A+ +
Sbjct: 321 PDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRGGLHEDAQAV 380

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLL 548
             ++  LG  P  K  + L   Y++AG   K    +   E  +  + PD F  ++N +L
Sbjct: 381 FEEMKRLGITPTMKSHMLLLSAYSKAGDVAKCEDIVN--ELHESGLEPDTF--VLNSML 435



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 147/325 (45%), Gaps = 6/325 (1%)

Query: 201 LEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVR 258
           LEK E    + AE ++  L PS I +   +D L +  N Q   ++ +  +  +  Q +  
Sbjct: 199 LEKAE---AIFAEMRKYGLPPSAIVYNAYIDGLMKAGNPQRAVEIFQR-MKRDCCQPSTE 254

Query: 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318
            Y+ LI+ H K +    A ++  +M      P+I T T LV+ +++ G  ++A+E FE L
Sbjct: 255 TYTLLINLHGKASQSYMALKLFNEMRSQKCKPNICTYTALVNAFAREGLCEKAEEIFEQL 314

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
           +  G +PD   YN+++ AY  AG P     +  +M   G E     Y  ++ ++ + G  
Sbjct: 315 QEDGHEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRGGLH 374

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             A  +   M+     PT++S  LL+ AY +AGD  +     + +   G +PD     SM
Sbjct: 375 EDAQAVFEEMKRLGITPTMKSHMLLLSAYSKAGDVAKCEDIVNELHESGLEPDTFVLNSM 434

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           +  YG+     K   +L  +E   +    +TY +L++  GR     + E L   ++    
Sbjct: 435 LNLYGRLGQFGKMEEVLTAMESGPYATDISTYNILINIYGRAGFFEKMEGLFQSLAAKNL 494

Query: 499 APPFKIQVSLCDMYARAGIEKKALQ 523
            P      S    Y+R  +  K L+
Sbjct: 495 KPDVVTWTSRLGAYSRKKLYTKCLE 519



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 131/299 (43%), Gaps = 5/299 (1%)

Query: 215 KELLQPSRIDWINLLDRLREQNTQLYFKVAELV-LSEESFQTNVRDYSKLIDAHAKENCL 273
           ++  QPS  +   LL  L  + +Q Y  +     +  +  + N+  Y+ L++A A+E   
Sbjct: 246 RDCCQPS-TETYTLLINLHGKASQSYMALKLFNEMRSQKCKPNICTYTALVNAFAREGLC 304

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           E AE I +++ E+G  PD+     L+  YS+AG    A E F  ++  G +PD+  YN M
Sbjct: 305 EKAEEIFEQLQEDGHEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIM 364

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           + AY   G  +   ++ + M   GI  + + ++ LL ++++ GDV     I N +     
Sbjct: 365 VDAYGRGGLHEDAQAVFEEMKRLGITPTMKSHMLLLSAYSKAGDVAKCEDIVNELHESGL 424

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
           +P       ++  YG+ G   +       M    +  D      +I  YG+    +K   
Sbjct: 425 EPDTFVLNSMLNLYGRLGQFGKMEEVLTAMESGPYATDISTYNILINIYGRAGFFEKMEG 484

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP---PFKIQVSLC 509
           L   L     +P   T+T  +    R +L  +  ++  ++ + G  P     K+ +S C
Sbjct: 485 LFQSLAAKNLKPDVVTWTSRLGAYSRKKLYTKCLEIFEEMIDAGCHPDGRTAKVLLSSC 543



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 117/270 (43%), Gaps = 8/270 (2%)

Query: 318 LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
           L    FQ D  ++N +I AY      K+  +    +I +    +E+ Y  LL+++   G 
Sbjct: 139 LYRSSFQSDVMIFNLVIDAYGRKSLYKMAETTYFELIEARCIPTEDTYALLLKAYCTSGL 198

Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
           +  A  I   MR     P+       ++   +AG+P +A   F  M R   +P       
Sbjct: 199 LEKAEAIFAEMRKYGLPPSAIVYNAYIDGLMKAGNPQRAVEIFQRMKRDCCQPSTETYTL 258

Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           +I  +GK +    AL L  E+     +P   TYT LV+   R  L  +AE++  ++ E G
Sbjct: 259 LINLHGKASQSYMALKLFNEMRSQKCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDG 318

Query: 498 EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG--PD--DFERIINGLLAGGFL 553
             P      +L + Y+RAG    A +    +    + MG  PD   +  +++    GG  
Sbjct: 319 HEPDVYAYNALMEAYSRAGFPYGAAEIFSLM----QHMGCEPDRASYNIMVDAYGRGGLH 374

Query: 554 QDAQRVHGLMEAQGFAASERLKVALISSQT 583
           +DAQ V   M+  G   + +  + L+S+ +
Sbjct: 375 EDAQAVFEEMKRLGITPTMKSHMLLLSAYS 404



 Score = 45.8 bits (107), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 35/181 (19%), Positives = 74/181 (40%)

Query: 387 IMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKN 446
           I+    FQ  +    L+++AYG+      A + +  +I     P +   A ++ AY    
Sbjct: 138 ILYRSSFQSDVMIFNLVIDAYGRKSLYKMAETTYFELIEARCIPTEDTYALLLKAYCTSG 197

Query: 447 LLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQV 506
           LL+KA  +  E+ K G  P    Y   +D L +      A ++  ++      P  +   
Sbjct: 198 LLEKAEAIFAEMRKYGLPPSAIVYNAYIDGLMKAGNPQRAVEIFQRMKRDCCQPSTETYT 257

Query: 507 SLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQ 566
            L +++ +A     AL+    + ++K +     +  ++N     G  + A+ +   ++  
Sbjct: 258 LLINLHGKASQSYMALKLFNEMRSQKCKPNICTYTALVNAFAREGLCEKAEEIFEQLQED 317

Query: 567 G 567
           G
Sbjct: 318 G 318


>gi|224135699|ref|XP_002322139.1| predicted protein [Populus trichocarpa]
 gi|222869135|gb|EEF06266.1| predicted protein [Populus trichocarpa]
          Length = 866

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/393 (24%), Positives = 174/393 (44%), Gaps = 22/393 (5%)

Query: 194 ITDKILSLEKEEDPSPLLAEWKELLQPSR---IDWINLLDRLREQNTQLYFKVAELVLSE 250
           ++ ++L   K+E  SP +  +  ++       +DW  LL    E             +  
Sbjct: 196 VSLELLERMKKERVSPSILTYNTVINSCARGGLDWEGLLGLFAE-------------MRH 242

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           E  Q ++  Y+ L+ A +     ++AE + + MNE G+VPDI T T LV  + K   LD+
Sbjct: 243 EGIQPDIVTYNTLLCACSNRGLGDEAEMVFRTMNEGGVVPDITTYTYLVDTFGKLNRLDK 302

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
             E  + + S G  P+   YN ++ AY   G  +    +  +M  +G   + E Y  LL 
Sbjct: 303 VSELLKEMASTGNVPEISSYNVLLEAYARIGNIEDATGVFRLMQEAGCVPNAETYSILLG 362

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
            + + G      ++   M++   +P   +   L++ +G+ G   +  + F  M     +P
Sbjct: 363 LYGKHGRYDEVRELFLEMKVSNTEPDAATYNTLIDVFGEGGYFKEVVTLFHDMAEENVEP 422

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           +      +I A GK  L D A  +LL + + G  P    YT +++  G+  +  EA   L
Sbjct: 423 NMETYEGLIFACGKGGLHDDAKKILLHMSEKGMIPSSKAYTGVIEAYGQAAMYEEALVTL 482

Query: 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKA---LQALGFLEAKKEQMGPDDFERIINGL 547
             ++E+G  P  +   +L  M+AR G+ K+    L  +G     +E+   D F  +I G 
Sbjct: 483 NTMNEMGSKPTIETYNTLIYMFARGGLYKETEAILLKMGDFGVARER---DSFNGVIEGF 539

Query: 548 LAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
             GG  ++A + +  ME       ER   A++S
Sbjct: 540 RQGGQFEEAIKAYVEMEKSRLVPDERTLEAVLS 572



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 78/369 (21%), Positives = 149/369 (40%), Gaps = 19/369 (5%)

Query: 214 WKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCL 273
           +KE  Q  R DW   L   +    Q++ K  E +            Y+ +I    +E  L
Sbjct: 114 FKEFAQ--RGDWQRSLRLFKHMQRQIWCKPNEHI------------YTIMISLLGREGLL 159

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           E    I ++M  +G+   + + T L++ Y + G  + + E  E ++     P    YN++
Sbjct: 160 EKCSDIFEEMGAHGVSRSVFSYTALINSYGRNGKYEVSLELLERMKKERVSPSILTYNTV 219

Query: 334 IMAYVNAGQPKLGM-SLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           I +    G    G+  L   M   GI+     Y  LL + +  G    A  +   M    
Sbjct: 220 INSCARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLCACSNRGLGDEAEMVFRTMNEGG 279

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P + + T LV+ +G+    D+       M   G+ P+      ++ AY +   ++ A 
Sbjct: 280 VVPDITTYTYLVDTFGKLNRLDKVSELLKEMASTGNVPEISSYNVLLEAYARIGNIEDAT 339

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
            +   +++ G  P   TY++L+   G+    +E  +L  ++      P      +L D++
Sbjct: 340 GVFRLMQEAGCVPNAETYSILLGLYGKHGRYDEVRELFLEMKVSNTEPDAATYNTLIDVF 399

Query: 513 ARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAA 570
              G  K+ +    F +  +E + P+   +E +I     GG   DA+++   M  +G   
Sbjct: 400 GEGGYFKEVVTL--FHDMAEENVEPNMETYEGLIFACGKGGLHDDAKKILLHMSEKGMIP 457

Query: 571 SERLKVALI 579
           S +    +I
Sbjct: 458 SSKAYTGVI 466



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 107/243 (44%), Gaps = 6/243 (2%)

Query: 219 QPSRIDWINLLDRLREQNTQLYFK-VAELV--LSEESFQTNVRDYSKLIDAHAKENCLED 275
           +P    +  L+D   E     YFK V  L   ++EE+ + N+  Y  LI A  K    +D
Sbjct: 386 EPDAATYNTLIDVFGEGG---YFKEVVTLFHDMAEENVEPNMETYEGLIFACGKGGLHDD 442

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A++IL  M+E G++P     T ++  Y +A   + A     ++   G +P  + YN++I 
Sbjct: 443 AKKILLHMSEKGMIPSSKAYTGVIEAYGQAAMYEEALVTLNTMNEMGSKPTIETYNTLIY 502

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
            +   G  K   +++  M   G+ R  + +  ++  F Q G    A +    M      P
Sbjct: 503 MFARGGLYKETEAILLKMGDFGVARERDSFNGVIEGFRQGGQFEEAIKAYVEMEKSRLVP 562

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
              +   ++  Y  AG  D++   F  +   G  P+  C   M+A Y K +  ++A  LL
Sbjct: 563 DERTLEAVLSVYCIAGLVDESVEQFQEIKASGILPNVMCYCMMLAVYAKSDRWNEAYELL 622

Query: 456 LEL 458
            E+
Sbjct: 623 DEM 625


>gi|125580966|gb|EAZ21897.1| hypothetical protein OsJ_05550 [Oryza sativa Japonica Group]
          Length = 595

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/358 (25%), Positives = 167/358 (46%), Gaps = 5/358 (1%)

Query: 224 DWINLLDRLR-EQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKK 282
           D +N+  + R  +   L   V E +L   SF+ ++  Y+ LI+++ K+  L  AE I   
Sbjct: 141 DLVNVAVQFRMNKKWDLIIPVCEWILYRSSFRPDIICYNLLIESYGKKRQLNKAESIYMA 200

Query: 283 MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
           + E   VP   T  +L+  Y  AG+L RA+     +R HG  P+  VYN+ +   + A  
Sbjct: 201 LLEAQCVPTEDTYALLLRAYCNAGSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKARC 260

Query: 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402
            +  + +   M       + E +  ++  + +      + ++ N M+    +P + + T 
Sbjct: 261 TEKAVEVYQRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTA 320

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           LV A+ + G  ++A   F+ M + GH+PD     +++ AY +  L   A  +   ++  G
Sbjct: 321 LVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMG 380

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522
            EP  A+Y +LVD  GR  L  +AE +  ++ + G +P  K  + L   +AR+G   +  
Sbjct: 381 CEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCE 440

Query: 523 QALGFLEAKKEQMGPDDF--ERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVAL 578
           + +  L   K  + PD F    ++N     G L D +R+   ME +G A      VA+
Sbjct: 441 EVMAQLH--KSGLTPDTFALNAMLNAYARAGRLDDMERLFAAMERRGDADVGTYNVAV 496



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 63/297 (21%), Positives = 121/297 (40%), Gaps = 43/297 (14%)

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL 349
           PDI+   +L+  Y K   L++A+  + +L      P +  Y  ++ AY NAG       +
Sbjct: 173 PDIICYNLLIESYGKKRQLNKAESIYMALLEAQCVPTEDTYALLLRAYCNAGSLHRAEGV 232

Query: 350 VDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409
           +  M   GI  +  +Y A L    +      A ++   M+ E  +   E+ TL       
Sbjct: 233 ISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTL------- 285

Query: 410 AGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPAT 469
                                       MI  YGK      ++ +  E++  G +P   T
Sbjct: 286 ----------------------------MINVYGKAKQPMSSMKVFNEMKSIGCKPNICT 317

Query: 470 YTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLE 529
           YT LV+   R  L  +AE++  ++ + G  P      +L + Y+RAG+ + A +    + 
Sbjct: 318 YTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLM- 376

Query: 530 AKKEQMG--PD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQ 582
              + MG  PD   +  +++     G  +DA+ V   ++ +G + + +  + L+++ 
Sbjct: 377 ---QHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAH 430



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/253 (21%), Positives = 108/253 (42%), Gaps = 34/253 (13%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  Y+ L++A A+E   E AE + ++M + G  PD+     L+  YS+AG    A E F
Sbjct: 314 NICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIF 373

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             ++  G +PD+  YN ++ AY  AG  +   ++ + +   G+  + + ++ LL + A+ 
Sbjct: 374 SLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARS 433

Query: 376 GDVRG-----------------------------AGQITNIMRI-----EEFQPTLESCT 401
           G+                                AG++ ++ R+           + +  
Sbjct: 434 GNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLFAAMERRGDADVGTYN 493

Query: 402 LLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD 461
           + V AYG+AG   +  + F  +   G   D     + + AY ++    + + ++ E+   
Sbjct: 494 VAVNAYGRAGYVGRMEAAFAAVAARGLAADVVTWTARMGAYARRKEYGRCVGMVEEMVDA 553

Query: 462 GFEPGPATYTVLV 474
           G  P   T  VL+
Sbjct: 554 GCYPDAGTARVLL 566



 Score = 43.1 bits (100), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 9/148 (6%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L+ ++F  N      +++A+A+   L+D ER+   M   G   D+ T  V V+ Y +AG 
Sbjct: 451 LTPDTFALNA-----MLNAYARAGRLDDMERLFAAMERRGDA-DVGTYNVAVNAYGRAGY 504

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           + R + AF ++ + G   D   + + + AY    +    + +V+ M+ +G          
Sbjct: 505 VGRMEAAFAAVAARGLAADVVTWTARMGAYARRKEYGRCVGMVEEMVDAGCYPDAGTARV 564

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQP 395
           LL   A C D R   Q+T I+R    +P
Sbjct: 565 LL---AACSDERQVEQVTAIVRSMHKKP 589


>gi|218190151|gb|EEC72578.1| hypothetical protein OsI_06020 [Oryza sativa Indica Group]
          Length = 738

 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 93/358 (25%), Positives = 167/358 (46%), Gaps = 5/358 (1%)

Query: 224 DWINLLDRLR-EQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKK 282
           D +N+  + R  +   L   V E +L   SF+ ++  Y+ LI+++ K+  L  AE I   
Sbjct: 284 DLVNVAVQFRMNKKWDLIIPVCEWILYRSSFRPDIICYNLLIESYGKKRQLNKAESIYMA 343

Query: 283 MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
           + E   VP   T  +L+  Y  AG+L RA+     +R HG  P+  VYN+ +   + A  
Sbjct: 344 LLEAQCVPTEDTYALLLRAYCNAGSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKARC 403

Query: 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402
            +  + +   M       + E +  ++  + +      + ++ N M+    +P + + T 
Sbjct: 404 TEKAVEVYQRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTA 463

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           LV A+ + G  ++A   F+ M + GH+PD     +++ AY +  L   A  +   ++  G
Sbjct: 464 LVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMG 523

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522
            EP  A+Y +LVD  GR  L  +AE +  ++ + G +P  K  + L   +AR+G   +  
Sbjct: 524 CEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCE 583

Query: 523 QALGFLEAKKEQMGPDDF--ERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVAL 578
           + +  L   K  + PD F    ++N     G L D +R+   ME +G A      VA+
Sbjct: 584 EVMAQLH--KSGLTPDTFALNAMLNAYARAGRLDDMERLLAAMERRGDADVGTYNVAV 639



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 62/279 (22%), Positives = 121/279 (43%), Gaps = 10/279 (3%)

Query: 318 LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
           L    F+PD   YN +I +Y    Q     S+   ++ +    +E+ Y  LLR++   G 
Sbjct: 309 LYRSSFRPDIICYNLLIESYGKKRQLNKAESIYMALLEAQCVPTEDTYALLLRAYCNAGS 368

Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
           +  A  + + MR     P        ++   +A   ++A   +  M R   + +      
Sbjct: 369 LHRAEGVISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTL 428

Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           MI  YGK      ++ +  E++  G +P   TYT LV+   R  L  +AE++  ++ + G
Sbjct: 429 MINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAG 488

Query: 498 EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG--PD--DFERIINGLLAGGFL 553
             P      +L + Y+RAG+ + A +    +    + MG  PD   +  +++     G  
Sbjct: 489 HEPDVYAYNALMEAYSRAGLPQGASEIFSLM----QHMGCEPDRASYNILVDAYGRAGLH 544

Query: 554 QDAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQPTR 592
           +DA+ V   ++ +G + + +  + L+++    R    TR
Sbjct: 545 EDAEAVFEELKQRGMSPTMKSHMLLLAAHA--RSGNATR 581



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/253 (22%), Positives = 109/253 (43%), Gaps = 34/253 (13%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  Y+ L++A A+E   E AE + ++M + G  PD+     L+  YS+AG    A E F
Sbjct: 457 NICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIF 516

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             ++  G +PD+  YN ++ AY  AG  +   ++ + +   G+  + + ++ LL + A+ 
Sbjct: 517 SLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARS 576

Query: 376 GDVRGAGQIT---------------NIM--------RIEEFQPTLE-----------SCT 401
           G+     ++                N M        R+++ +  L            +  
Sbjct: 577 GNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLLAAMERRGDADVGTYN 636

Query: 402 LLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD 461
           + V AYG+AG   +  + F  +   G   D     + + AY ++    + + ++ E+   
Sbjct: 637 VAVNAYGRAGYVGRMEAAFAAVAARGLAADVVTWTARMGAYARRKEYGRCVGMVEEMVDA 696

Query: 462 GFEPGPATYTVLV 474
           G  P   T  VL+
Sbjct: 697 GCYPDAGTARVLL 709



 Score = 43.9 bits (102), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 9/148 (6%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L+ ++F  N      +++A+A+   L+D ER+L  M   G   D+ T  V V+ Y +AG 
Sbjct: 594 LTPDTFALNA-----MLNAYARAGRLDDMERLLAAMERRGDA-DVGTYNVAVNAYGRAGY 647

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           + R + AF ++ + G   D   + + + AY    +    + +V+ M+ +G          
Sbjct: 648 VGRMEAAFAAVAARGLAADVVTWTARMGAYARRKEYGRCVGMVEEMVDAGCYPDAGTARV 707

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQP 395
           LL   A C D R   Q+T I+R    +P
Sbjct: 708 LL---AACSDERQVEQVTAIVRSMHKKP 732


>gi|255540825|ref|XP_002511477.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550592|gb|EEF52079.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 754

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 154/333 (46%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +  E  Q ++  Y+ L++A A     ++AE + + MNE G+VPDI T   LV  + K   
Sbjct: 239 MRHEGIQPDIITYNTLLNACANRGLGDEAEMVFRTMNEGGMVPDITTYRNLVETFGKLNK 298

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L++  E  + + S G  PD   YN ++ AY + G  +  M +   M  +    +   Y  
Sbjct: 299 LEKVSELLKEMESSGNLPDISSYNVLLEAYASKGDIRHAMGVFRQMQEARCVPNAVTYSM 358

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           LL  +   G      ++   M++   +P + +  +L+E +G+ G   +  + F  M+   
Sbjct: 359 LLNLYGGHGRYDDVRELFLEMKVSNTEPDVGTYNVLIEVFGEGGYFKEVVTLFHDMVEEN 418

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            +P+      +I A GK  L + A  +LL +++ G  P    YT +++  G+     EA 
Sbjct: 419 VEPNMGTYEGLIYACGKGGLHEDAKKILLHMDEKGIVPSTKAYTGVIEAYGQAASYEEAL 478

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
            +   ++E+G  P  +   SL +M+AR G+ K++   +  +         D F  +I G 
Sbjct: 479 VMFNTMNEMGSKPTVETYNSLINMFARGGLYKESEAIMWKMGESGVARDRDSFNGVIEGY 538

Query: 548 LAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
             GG  ++A + +  +E   F   ER   A++S
Sbjct: 539 RQGGQFEEAIKTYVELEKARFQPDERTFEAVLS 571



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 75/321 (23%), Positives = 139/321 (43%), Gaps = 37/321 (11%)

Query: 242 KVAELVLSEESFQT--NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLV 299
           KV+EL+   ES     ++  Y+ L++A+A +  +  A  + ++M E   VP+ VT ++L+
Sbjct: 301 KVSELLKEMESSGNLPDISSYNVLLEAYASKGDIRHAMGVFRQMQEARCVPNAVTYSMLL 360

Query: 300 HMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
           ++Y   G  D  +E F  ++    +PD   YN +I  +   G  K  ++L   M+   +E
Sbjct: 361 NLYGGHGRYDDVRELFLEMKVSNTEPDVGTYNVLIEVFGEGGYFKEVVTLFHDMVEENVE 420

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
            +   Y  L+ +  + G    A +I   M  +   P+ ++ T ++EAYGQA   ++A   
Sbjct: 421 PNMGTYEGLIYACGKGGLHEDAKKILLHMDEKGIVPSTKAYTGVIEAYGQAASYEEALVM 480

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNL-------------------------------- 447
           F+ M  +G KP      S+I  + +  L                                
Sbjct: 481 FNTMNEMGSKPTVETYNSLINMFARGGLYKESEAIMWKMGESGVARDRDSFNGVIEGYRQ 540

Query: 448 ---LDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKI 504
               ++A+   +ELEK  F+P   T+  ++       L++E+E+   +I   G  P    
Sbjct: 541 GGQFEEAIKTYVELEKARFQPDERTFEAVLSVYCTAGLVDESEEQFREIRASGILPSVMC 600

Query: 505 QVSLCDMYARAGIEKKALQAL 525
              +  +YAR+     A + L
Sbjct: 601 YCMMIAVYARSNRWDDAYEVL 621



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 102/222 (45%), Gaps = 3/222 (1%)

Query: 240 YFK-VAELV--LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTST 296
           YFK V  L   + EE+ + N+  Y  LI A  K    EDA++IL  M+E GIVP     T
Sbjct: 403 YFKEVVTLFHDMVEENVEPNMGTYEGLIYACGKGGLHEDAKKILLHMDEKGIVPSTKAYT 462

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
            ++  Y +A + + A   F ++   G +P  + YNS+I  +   G  K   +++  M  S
Sbjct: 463 GVIEAYGQAASYEEALVMFNTMNEMGSKPTVETYNSLINMFARGGLYKESEAIMWKMGES 522

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
           G+ R  + +  ++  + Q G    A +    +    FQP   +   ++  Y  AG  D++
Sbjct: 523 GVARDRDSFNGVIEGYRQGGQFEEAIKTYVELEKARFQPDERTFEAVLSVYCTAGLVDES 582

Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
              F  +   G  P   C   MIA Y + N  D A  +L E+
Sbjct: 583 EEQFREIRASGILPSVMCYCMMIAVYARSNRWDDAYEVLDEM 624



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 84/401 (20%), Positives = 161/401 (40%), Gaps = 25/401 (6%)

Query: 184 PKPITGKCKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKV 243
           P+    +C  I    LSL      +     +KE  Q  R DW   L   +    Q++ K 
Sbjct: 89  PRGSIARCLEIFKNKLSL------NDFALVFKEFAQ--RGDWQRSLRLFKYMQRQIWCKP 140

Query: 244 AELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS 303
            E +            Y+ +I    +E  LE +  I ++M  +G+   + + T L++ Y 
Sbjct: 141 NEHI------------YTIIISLLGREGLLEKSTEIFEEMPTHGVPRSVFSYTALINSYG 188

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGM-SLVDMMITSGIERSE 362
           + G  + + E  E ++     P    YN++I +    G    G+ SL   M   GI+   
Sbjct: 189 RHGQYEVSLELLERMKKEKVTPSILTYNTVINSCARGGLNWEGLLSLFAEMRHEGIQPDI 248

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
             Y  LL + A  G    A  +   M      P + +   LVE +G+    ++       
Sbjct: 249 ITYNTLLNACANRGLGDEAEMVFRTMNEGGMVPDITTYRNLVETFGKLNKLEKVSELLKE 308

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
           M   G+ PD      ++ AY  K  +  A+ +  ++++    P   TY++L++  G    
Sbjct: 309 MESSGNLPDISSYNVLLEAYASKGDIRHAMGVFRQMQEARCVPNAVTYSMLLNLYGGHGR 368

Query: 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DF 540
            ++  +L  ++      P       L +++   G  K+ +    F +  +E + P+   +
Sbjct: 369 YDDVRELFLEMKVSNTEPDVGTYNVLIEVFGEGGYFKEVVTL--FHDMVEENVEPNMGTY 426

Query: 541 ERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
           E +I     GG  +DA+++   M+ +G   S +    +I +
Sbjct: 427 EGLIYACGKGGLHEDAKKILLHMDEKGIVPSTKAYTGVIEA 467



 Score = 42.7 bits (99), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 31/153 (20%), Positives = 60/153 (39%), Gaps = 35/153 (22%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIV----------------- 289
            ++E   +  V  Y+ LI+  A+    +++E I+ KM E+G+                  
Sbjct: 483 TMNEMGSKPTVETYNSLINMFARGGLYKESEAIMWKMGESGVARDRDSFNGVIEGYRQGG 542

Query: 290 ------------------PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYN 331
                             PD  T   ++ +Y  AG +D ++E F  +R+ G  P    Y 
Sbjct: 543 QFEEAIKTYVELEKARFQPDERTFEAVLSVYCTAGLVDESEEQFREIRASGILPSVMCYC 602

Query: 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
            MI  Y  + +      ++D M+T+ +    ++
Sbjct: 603 MMIAVYARSNRWDDAYEVLDEMVTNKVSNIHQV 635


>gi|356562783|ref|XP_003549648.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Glycine max]
          Length = 859

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/371 (25%), Positives = 160/371 (43%), Gaps = 16/371 (4%)

Query: 197 KILSLEKEEDPSPLLAEWKELLQPSR---IDWINLLDRLREQNTQLYFKVAELVLSEESF 253
           ++L+  K+E  SP +  +  ++       +DW  LL    E             +  E  
Sbjct: 192 ELLNGMKQERVSPSILTYNTVINACARGGLDWEGLLGLFAE-------------MRHEGI 238

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           Q +V  Y+ L+ A A     ++AE + + MNE+GIVPDI T + LV  + K   L++  E
Sbjct: 239 QPDVITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSE 298

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
               + S G  PD   YN ++ AY   G  K  M +   M  +G   +   Y  LL  + 
Sbjct: 299 LLREMESGGNLPDITSYNVLLEAYAELGSIKEAMDVFRQMQAAGCVANAATYSVLLNLYG 358

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           + G       I   M++    P   +  +L++ +G+ G   +  + F  M+    +P+  
Sbjct: 359 KHGRYDDVRDIFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMVEENVEPNME 418

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
               +I A GK  L + A  +LL + + G  P    YT +++  G+  L  EA  +   +
Sbjct: 419 TYEGLIFACGKGGLYEDAKKILLHMNEKGIVPSSKAYTGVIEAFGQAALYEEALVVFNTM 478

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFL 553
           +E+G  P  +   S    +AR G+ K+A   L  +     +     F  +I     GG  
Sbjct: 479 NEVGSNPTVETYNSFIHAFARGGLYKEAEAILSRMNESGLKRDVHSFNGVIKAFRQGGQY 538

Query: 554 QDAQRVHGLME 564
           ++A + +  ME
Sbjct: 539 EEAVKSYVEME 549



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 104/222 (46%), Gaps = 3/222 (1%)

Query: 240 YFK-VAELV--LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTST 296
           YFK V  L   + EE+ + N+  Y  LI A  K    EDA++IL  MNE GIVP     T
Sbjct: 397 YFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLYEDAKKILLHMNEKGIVPSSKAYT 456

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
            ++  + +A   + A   F ++   G  P  + YNS I A+   G  K   +++  M  S
Sbjct: 457 GVIEAFGQAALYEEALVVFNTMNEVGSNPTVETYNSFIHAFARGGLYKEAEAILSRMNES 516

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
           G++R    +  ++++F Q G    A +    M     +P   +  +++  Y  AG  D++
Sbjct: 517 GLKRDVHSFNGVIKAFRQGGQYEEAVKSYVEMEKANCEPNELTLEVVLSVYCSAGLVDES 576

Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
              F  +   G  P   C   M+A Y K + L+ A NL+ E+
Sbjct: 577 EEQFQEIKASGILPSVMCYCLMLALYAKNDRLNDAYNLIDEM 618



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 134/310 (43%), Gaps = 37/310 (11%)

Query: 242 KVAELVLSEESFQT--NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLV 299
           KV+EL+   ES     ++  Y+ L++A+A+   +++A  + ++M   G V +  T +VL+
Sbjct: 295 KVSELLREMESGGNLPDITSYNVLLEAYAELGSIKEAMDVFRQMQAAGCVANAATYSVLL 354

Query: 300 HMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
           ++Y K G  D  ++ F  ++     PD   YN +I  +   G  K  ++L   M+   +E
Sbjct: 355 NLYGKHGRYDDVRDIFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMVEENVE 414

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
            + E Y  L+ +  + G    A +I   M  +   P+ ++ T ++EA+GQA   ++A   
Sbjct: 415 PNMETYEGLIFACGKGGLYEDAKKILLHMNEKGIVPSSKAYTGVIEAFGQAALYEEALVV 474

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL------------------------ 455
           F+ M  +G  P      S I A+ +  L  +A  +L                        
Sbjct: 475 FNTMNEVGSNPTVETYNSFIHAFARGGLYKEAEAILSRMNESGLKRDVHSFNGVIKAFRQ 534

Query: 456 -----------LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKI 504
                      +E+EK   EP   T  V++       L++E+E+   +I   G  P    
Sbjct: 535 GGQYEEAVKSYVEMEKANCEPNELTLEVVLSVYCSAGLVDESEEQFQEIKASGILPSVMC 594

Query: 505 QVSLCDMYAR 514
              +  +YA+
Sbjct: 595 YCLMLALYAK 604



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 135/314 (42%), Gaps = 7/314 (2%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNEN-GIVPDIVTSTVLVHMYSKAGNLDRAKEA 314
           ++ D++ +    A+    + + R+ K M       P+    T+++ +  + G LD+ +E 
Sbjct: 99  SLNDFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMITLLGREGLLDKCREV 158

Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
           F+ + S+G      VY ++I AY   GQ    + L++ M    +  S   Y  ++ + A+
Sbjct: 159 FDEMPSNGVARTVYVYTAVINAYGRNGQFHASLELLNGMKQERVSPSILTYNTVINACAR 218

Query: 375 CG-DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
            G D  G   +   MR E  QP + +   L+ A    G  D+A   F  M   G  PD  
Sbjct: 219 GGLDWEGLLGLFAEMRHEGIQPDVITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDIN 278

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
             + ++  +GK N L+K   LL E+E  G  P   +Y VL++    L  I EA  +  ++
Sbjct: 279 TYSYLVQTFGKLNRLEKVSELLREMESGGNLPDITSYNVLLEAYAELGSIKEAMDVFRQM 338

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGG 551
              G          L ++Y + G          FLE K     PD   +  +I     GG
Sbjct: 339 QAAGCVANAATYSVLLNLYGKHGRYDDVRDI--FLEMKVSNTDPDAGTYNILIQVFGEGG 396

Query: 552 FLQDAQRV-HGLME 564
           + ++   + H ++E
Sbjct: 397 YFKEVVTLFHDMVE 410



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/231 (19%), Positives = 100/231 (43%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI    +    ++   +   M E  + P++ T   L+    K G  + AK+    + 
Sbjct: 385 YNILIQVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLYEDAKKILLHMN 444

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P  K Y  +I A+  A   +  + + + M   G   + E Y + + +FA+ G  +
Sbjct: 445 EKGIVPSSKAYTGVIEAFGQAALYEEALVVFNTMNEVGSNPTVETYNSFIHAFARGGLYK 504

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  I + M     +  + S   +++A+ Q G  ++A  ++  M +   +P++     ++
Sbjct: 505 EAEAILSRMNESGLKRDVHSFNGVIKAFRQGGQYEEAVKSYVEMEKANCEPNELTLEVVL 564

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           + Y    L+D++     E++  G  P    Y +++    +   +N+A  L+
Sbjct: 565 SVYCSAGLVDESEEQFQEIKASGILPSVMCYCLMLALYAKNDRLNDAYNLI 615



 Score = 47.4 bits (111), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 241 FKVAELVLS---EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTV 297
           +K AE +LS   E   + +V  ++ +I A  +    E+A +   +M +    P+ +T  V
Sbjct: 503 YKEAEAILSRMNESGLKRDVHSFNGVIKAFRQGGQYEEAVKSYVEMEKANCEPNELTLEV 562

Query: 298 LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMIT 355
           ++ +Y  AG +D ++E F+ +++ G  P    Y  M+  Y    +     +L+D MIT
Sbjct: 563 VLSVYCSAGLVDESEEQFQEIKASGILPSVMCYCLMLALYAKNDRLNDAYNLIDEMIT 620


>gi|297849270|ref|XP_002892516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338358|gb|EFH68775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 607

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/287 (28%), Positives = 141/287 (49%), Gaps = 2/287 (0%)

Query: 215 KELLQPSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCL 273
           K  L+P+ + +  L++   +  N  + F++    + +   + +V  YS LI+A  KEN +
Sbjct: 268 KRSLRPTVVSFNTLINGYCKVGNLDVGFRLKHH-MEKSRTRPDVFTYSALINALCKENKM 326

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           + A R+  +M E G++P+ V  T L+H +S+ G +D  KE+++ + S G QPD  +YN++
Sbjct: 327 DGAHRLFYEMCERGLIPNDVIFTTLIHGHSRNGQIDLMKESYQKMLSKGLQPDIVLYNTL 386

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           +  +   G      ++VD MI  G+   +  Y  L+  F + GDV  A +I   M     
Sbjct: 387 VNGFCKNGDLVAARNIVDGMIRRGLRPDKVTYTTLIDGFCRGGDVDTALEIRKEMDQNGI 446

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
           +      + L+    + G    A      M+R G KPDD     M+ A+ KK        
Sbjct: 447 ELDRVGFSALICGMCKEGRVIDAERALREMLRAGMKPDDVTYTMMMDAFCKKGDAQTGFK 506

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
           LL E++ DG  P   TY VL++ L +L  +  A+ LL  +  +G  P
Sbjct: 507 LLKEMQSDGHIPNVVTYNVLLNGLCKLGQMKNADMLLDAMLNVGVVP 553



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 59/309 (19%), Positives = 115/309 (37%), Gaps = 35/309 (11%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           + +F   +R    L+D   K N          ++ + G   ++    +L++ + K GN+ 
Sbjct: 198 KHNFVVPIRGCGNLLDRMMKLNPTGTVWGFYMEILDAGFPLNVYVFNILMNKFCKEGNIC 257

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A++ F+ +     +P    +N++I  Y   G   +G  L   M  S        Y AL+
Sbjct: 258 DAQKVFDEITKRSLRPTVVSFNTLINGYCKVGNLDVGFRLKHHMEKSRTRPDVFTYSALI 317

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
            +  +   + GA ++   M      P     T L+  + + G  D  + ++  M+  G +
Sbjct: 318 NALCKENKMDGAHRLFYEMCERGLIPNDVIFTTLIHGHSRNGQIDLMKESYQKMLSKGLQ 377

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     +++  + K   L  A N++  + + G  P   TYT L+D              
Sbjct: 378 PDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKVTYTTLIDG------------- 424

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLA 549
                                 + R G    AL+    ++    ++    F  +I G+  
Sbjct: 425 ----------------------FCRGGDVDTALEIRKEMDQNGIELDRVGFSALICGMCK 462

Query: 550 GGFLQDAQR 558
            G + DA+R
Sbjct: 463 EGRVIDAER 471



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 6/155 (3%)

Query: 218 LQPSRIDWINLLD---RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           L+P ++ +  L+D   R  + +T L  +     + +   + +   +S LI    KE  + 
Sbjct: 411 LRPDKVTYTTLIDGFCRGGDVDTALEIRKE---MDQNGIELDRVGFSALICGMCKEGRVI 467

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           DAER L++M   G+ PD VT T+++  + K G+     +  + ++S G  P+   YN ++
Sbjct: 468 DAERALREMLRAGMKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHIPNVVTYNVLL 527

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
                 GQ K    L+D M+  G+   +  Y  LL
Sbjct: 528 NGLCKLGQMKNADMLLDAMLNVGVVPDDITYNTLL 562


>gi|449453087|ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449522905|ref|XP_004168466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 915

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 147/305 (48%), Gaps = 11/305 (3%)

Query: 198 ILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNV 257
           ILSL +  + SP    + EL+          L   R +N      +   +L E   Q NV
Sbjct: 401 ILSLMESNNCSPNARTYNELI----------LGFCRGKNIHKAMSLLHKML-ERKLQPNV 449

Query: 258 RDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFES 317
             Y+ LI    KE  L  A ++L  MNE+G+VPD  T +V +    K G ++ A+  FES
Sbjct: 450 VTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFES 509

Query: 318 LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
           L+  G + ++ +Y+++I  Y   G+   G  L+D M+++G   +   Y +L+  + +  +
Sbjct: 510 LKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKN 569

Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
            + A  + +IM   + +P  ++ T+L++   +  + DQA   FD M+  G  PD     +
Sbjct: 570 FKEARLLVDIMIKRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTA 629

Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
            I AY     L  A  L+ ++   G  P    YT+ +D  GR   I+ A  +L ++ E+G
Sbjct: 630 FIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHEVG 689

Query: 498 EAPPF 502
             P +
Sbjct: 690 CEPSY 694



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 129/309 (41%), Gaps = 35/309 (11%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           ++E+  Q NV  Y+ LI +  +++  +DA++IL  M E G++P +VT   L+  Y K G 
Sbjct: 335 MTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGL 394

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
              A E    + S+   P+ + YN +I+ +         MSL+  M+   ++ +   Y  
Sbjct: 395 SASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNI 454

Query: 368 LLRSFAQCGDVRGAGQITNIMR-----------------------IEEFQPTLESC---- 400
           L+    + GD+  A ++ ++M                        +EE +   ES     
Sbjct: 455 LIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKG 514

Query: 401 --------TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
                   + L++ Y + G     R   D M+  G  P+     S+I  Y K+    +A 
Sbjct: 515 IKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEAR 574

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
            L+  + K   EP   TYT+L+D L +    ++A  +  ++   G  P   I  +    Y
Sbjct: 575 LLVDIMIKRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAY 634

Query: 513 ARAGIEKKA 521
              G  K A
Sbjct: 635 CSHGRLKDA 643



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 72/334 (21%), Positives = 139/334 (41%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E++    VR Y+ +I A  +     +A  + K+M E    P++ T TVL+    +  N
Sbjct: 300 MHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTVLICSLCEDSN 359

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            D AK+    +   G  P    YN++I  Y   G     + ++ +M ++    +   Y  
Sbjct: 360 FDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEILSLMESNNCSPNARTYNE 419

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+  F +  ++  A  + + M   + QP + +  +L+    + GD   A      M   G
Sbjct: 420 LILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESG 479

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD+   +  I    K+ L+++A +L   L++ G +     Y+ L+D   ++  +++  
Sbjct: 480 LVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGR 539

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
            LL K+   G  P      SL D Y +    K+A   +  +  +  +   D +  +I+ L
Sbjct: 540 FLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADTYTILIDNL 599

Query: 548 LAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
           L       A  +   M + G      +  A I +
Sbjct: 600 LKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHA 633



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 70/320 (21%), Positives = 134/320 (41%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F+  +R Y+ L+   ++   +++ + +  +M ++ + P+I T   +V+ Y K GN+  A+
Sbjct: 165 FKLTLRCYNMLLMLLSRFLMIDEMKSVYLEMLDDMVTPNIFTLNTMVNGYCKLGNVVEAE 224

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
                +   G   D   Y S+I+ Y          ++   M   G  R+E  Y  L+  F
Sbjct: 225 LYVSKIVQAGLSLDTFTYTSLILGYCRNKNVDAANAIFLSMPNKGCLRNEVSYTNLIHGF 284

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            +   V  A ++ + M  +   PT+ + T+++ A  Q G   +A + F  M     +P+ 
Sbjct: 285 CEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNV 344

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
                +I +  + +  D A  +L  + + G  P   TY  L+D   +  L   A ++L  
Sbjct: 345 HTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEILSL 404

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
           +     +P  +    L   + R     KA+  L  +  +K Q     +  +I+G    G 
Sbjct: 405 MESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEGD 464

Query: 553 LQDAQRVHGLMEAQGFAASE 572
           L  A ++  LM   G    E
Sbjct: 465 LGSAYKLLSLMNESGLVPDE 484



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 82/344 (23%), Positives = 132/344 (38%), Gaps = 35/344 (10%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N   Y+ LID + KE   ++A  ++  M +  I P   T T+L+    K    D+A + F
Sbjct: 553 NSITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADTYTILIDNLLKDDEFDQAHDMF 612

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + + S G  PD  +Y + I AY + G+ K    L+  M   GI     +Y   + ++ + 
Sbjct: 613 DQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAYGRF 672

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA--------------------GDPDQ 415
           G + GA  I   M     +P+  + + L++    A                     D   
Sbjct: 673 GSIDGAFGILKRMHEVGCEPSYYTYSCLIKHLSNAKPKEVSSSSELSDLSSGVASNDFSN 732

Query: 416 ARSNFDYMIRL---------GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG 466
                DY   L         G  P+       I    K   L+ A  L   +++ G  P 
Sbjct: 733 CWRRVDYEFTLDLFGKMAEHGCAPNANTYGKFITGLCKVGCLEVAHRLFDHMKEKGQSPN 792

Query: 467 PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPF-KIQVSLCDMYARAGIEKKALQAL 525
              Y  L+    +L L  EA + L  + E    P     ++ LC +Y     EK      
Sbjct: 793 EDIYNSLLGCSCQLGLYGEAIRWLDIMIENRHLPHLDSCKLLLCGLYDEGNDEKAKRVFC 852

Query: 526 GFL--EAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
            FL  E   ++M    ++ +I+GLL  G       + G+ME QG
Sbjct: 853 SFLQCEYNYDEMV---WKVLIDGLLKKGLSDKCSDLFGIMETQG 893



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 72/326 (22%), Positives = 140/326 (42%), Gaps = 4/326 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+   + +++ + K   + +AE  + K+ + G+  D  T T L+  Y +  N+D A   F
Sbjct: 203 NIFTLNTMVNGYCKLGNVVEAELYVSKIVQAGLSLDTFTYTSLILGYCRNKNVDAANAIF 262

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
            S+ + G   ++  Y ++I  +  A +    + L   M       +   Y  ++ +  Q 
Sbjct: 263 LSMPNKGCLRNEVSYTNLIHGFCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQL 322

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G    A  +   M  +  QP + + T+L+ +  +  + D A+   + M+  G  P     
Sbjct: 323 GRKTEALNMFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTY 382

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I  Y KK L   AL +L  +E +   P   TY  L+    R + I++A  LL K+ E
Sbjct: 383 NALIDGYCKKGLSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLE 442

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFL 553
               P       L     + G    A + L  +   +  + PD+  +   I+ L   G +
Sbjct: 443 RKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMN--ESGLVPDEWTYSVFIDTLCKRGLV 500

Query: 554 QDAQRVHGLMEAQGFAASERLKVALI 579
           ++A+ +   ++ +G  A+E +   LI
Sbjct: 501 EEARSLFESLKEKGIKANEVIYSTLI 526



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 103/254 (40%), Gaps = 29/254 (11%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG------------- 306
           Y+  IDA+ +   ++ A  ILK+M+E G  P   T + L+   S A              
Sbjct: 662 YTLFIDAYGRFGSIDGAFGILKRMHEVGCEPSYYTYSCLIKHLSNAKPKEVSSSSELSDL 721

Query: 307 ----------------NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV 350
                           + +   + F  +  HG  P+   Y   I      G  ++   L 
Sbjct: 722 SSGVASNDFSNCWRRVDYEFTLDLFGKMAEHGCAPNANTYGKFITGLCKVGCLEVAHRLF 781

Query: 351 DMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410
           D M   G   +E+IY +LL    Q G    A +  +IM      P L+SC LL+      
Sbjct: 782 DHMKEKGQSPNEDIYNSLLGCSCQLGLYGEAIRWLDIMIENRHLPHLDSCKLLLCGLYDE 841

Query: 411 GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATY 470
           G+ ++A+  F   ++  +  D+     +I    KK L DK  +L   +E  G +  P TY
Sbjct: 842 GNDEKAKRVFCSFLQCEYNYDEMVWKVLIDGLLKKGLSDKCSDLFGIMETQGCQIHPKTY 901

Query: 471 TVLVDWLGRLQLIN 484
           ++L++    +Q I+
Sbjct: 902 SMLIEGFDGIQEID 915



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/338 (20%), Positives = 138/338 (40%), Gaps = 5/338 (1%)

Query: 242 KVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM 301
           K+ +  LS ++F      Y+ LI  + +   ++ A  I   M   G + + V+ T L+H 
Sbjct: 229 KIVQAGLSLDTFT-----YTSLILGYCRNKNVDAANAIFLSMPNKGCLRNEVSYTNLIHG 283

Query: 302 YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS 361
           + +A  +D A + F  +      P  + Y  +I A    G+    +++   M     + +
Sbjct: 284 FCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPN 343

Query: 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421
              Y  L+ S  +  +   A +I N M  +   P++ +   L++ Y + G    A     
Sbjct: 344 VHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEILS 403

Query: 422 YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ 481
            M      P+ R    +I  + +   + KA++LL ++ +   +P   TY +L+    +  
Sbjct: 404 LMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEG 463

Query: 482 LINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFE 541
            +  A +LL  ++E G  P         D   + G+ ++A      L+ K  +     + 
Sbjct: 464 DLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYS 523

Query: 542 RIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
            +I+G    G + D + +   M + G   +     +LI
Sbjct: 524 TLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLI 561


>gi|225457182|ref|XP_002280557.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic [Vitis vinifera]
          Length = 869

 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 93/391 (23%), Positives = 169/391 (43%), Gaps = 16/391 (4%)

Query: 197 KILSLEKEEDPSPLLAEWKELLQPSR---IDWINLLDRLREQNTQLYFKVAELVLSEESF 253
           ++L   K+E  SP +  +  ++       +DW  LL    +             +  E  
Sbjct: 202 ELLDRMKKERVSPSILTYNTVINSCARGGLDWEELLGLFAQ-------------MRHEGI 248

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           Q ++  Y+ L+ A A+    ++AE + + MNE GI+PDI T + LV  + K   L++  E
Sbjct: 249 QADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKVSE 308

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
             + + S G  PD   YN ++ A+  +G  K  M +   M  +G   +   Y  LL  + 
Sbjct: 309 LLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLYG 368

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           + G       +   M++   +P   +  +L+  +G+ G   +  + F  M+    +P+  
Sbjct: 369 RHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEENVEPNME 428

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
               +I A GK  L + A  +LL + + G  P    YT +++  G+  L  EA      +
Sbjct: 429 TYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALVAFNTM 488

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFL 553
           +E+G  P  +   SL  M+A+ G+ K++   L  +         D F  +I     GG  
Sbjct: 489 NEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKMGQSGVARNRDTFNGVIEAFRQGGQF 548

Query: 554 QDAQRVHGLMEAQGFAASERLKVALISSQTF 584
           ++A + +  ME       E+   A++S   F
Sbjct: 549 EEAIKAYVEMEKARCDPDEQTLEAVLSVYCF 579



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 155/333 (46%), Gaps = 7/333 (2%)

Query: 244 AELV---LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
           AE+V   ++E     ++  YS L++   K N LE    +LK+M   G  PDI +  VL+ 
Sbjct: 271 AEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKVSELLKEMESGGSFPDITSYNVLLE 330

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
            ++++G++  A   F  ++  G  P+   Y+ ++  Y   G+      L   M  S  E 
Sbjct: 331 AHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLYGRHGRYDDVRDLFLEMKVSNTEP 390

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
           +   Y  L+  F + G  +    + + M  E  +P +E+   L+ A G+ G  + A+   
Sbjct: 391 NAATYNILINVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLHEDAKKIL 450

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
            +M   G  P  +    +I AYG+  L ++AL     + + G +P   TY  L+    + 
Sbjct: 451 LHMNEKGVVPSSKAYTGVIEAYGQAALYEEALVAFNTMNEVGSKPTVETYNSLIQMFAKG 510

Query: 481 QLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD- 539
            L  E+E +L K+ + G A        + + + + G  ++A++A  ++E +K +  PD+ 
Sbjct: 511 GLYKESEAILLKMGQSGVARNRDTFNGVIEAFRQGGQFEEAIKA--YVEMEKARCDPDEQ 568

Query: 540 -FERIINGLLAGGFLQDAQRVHGLMEAQGFAAS 571
             E +++     G +++++   G ++A G   S
Sbjct: 569 TLEAVLSVYCFAGLVEESEEQFGEIKALGILPS 601



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 139/311 (44%), Gaps = 37/311 (11%)

Query: 242 KVAELVLSEESFQT--NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLV 299
           KV+EL+   ES  +  ++  Y+ L++AHA+   +++A  + ++M   G VP+  T ++L+
Sbjct: 305 KVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILL 364

Query: 300 HMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
           ++Y + G  D  ++ F  ++    +P+   YN +I  +   G  K  ++L   M+   +E
Sbjct: 365 NLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEENVE 424

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
            + E Y  L+ +  + G    A +I   M  +   P+ ++ T ++EAYGQA   ++A   
Sbjct: 425 PNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALVA 484

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNL-------------------------------- 447
           F+ M  +G KP      S+I  + K  L                                
Sbjct: 485 FNTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKMGQSGVARNRDTFNGVIEAFRQ 544

Query: 448 ---LDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKI 504
               ++A+   +E+EK   +P   T   ++       L+ E+E+  G+I  LG  P    
Sbjct: 545 GGQFEEAIKAYVEMEKARCDPDEQTLEAVLSVYCFAGLVEESEEQFGEIKALGILPSVMC 604

Query: 505 QVSLCDMYARA 515
              +  +YA+A
Sbjct: 605 YCMMLAVYAKA 615



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 104/222 (46%), Gaps = 3/222 (1%)

Query: 240 YFK-VAELV--LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTST 296
           YFK V  L   + EE+ + N+  Y  LI A  K    EDA++IL  MNE G+VP     T
Sbjct: 407 YFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYT 466

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
            ++  Y +A   + A  AF ++   G +P  + YNS+I  +   G  K   +++  M  S
Sbjct: 467 GVIEAYGQAALYEEALVAFNTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKMGQS 526

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
           G+ R+ + +  ++ +F Q G    A +    M      P  ++   ++  Y  AG  +++
Sbjct: 527 GVARNRDTFNGVIEAFRQGGQFEEAIKAYVEMEKARCDPDEQTLEAVLSVYCFAGLVEES 586

Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
              F  +  LG  P   C   M+A Y K +  D A  LL E+
Sbjct: 587 EEQFGEIKALGILPSVMCYCMMLAVYAKADRWDDAHQLLDEM 628



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 137/314 (43%), Gaps = 7/314 (2%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNEN-GIVPDIVTSTVLVHMYSKAGNLDRAKEA 314
           ++ D++ +    A+    + + R+ K M       P+    T+++ +  + G L++ +E 
Sbjct: 109 SLNDFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMIGVLGREGLLEKCQEI 168

Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
           F+ + SHG  P    + ++I AY   GQ K  + L+D M    +  S   Y  ++ S A+
Sbjct: 169 FDEMPSHGVAPSVFSFTALINAYGRNGQYKSSLELLDRMKKERVSPSILTYNTVINSCAR 228

Query: 375 CG-DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
            G D      +   MR E  Q  + +   L+ A  + G  D+A   F  M   G  PD  
Sbjct: 229 GGLDWEELLGLFAQMRHEGIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDIT 288

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
             + ++  +GK N L+K   LL E+E  G  P   +Y VL++   +   I EA  +  ++
Sbjct: 289 TYSYLVETFGKLNRLEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQM 348

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGG 551
              G  P       L ++Y R G          FLE K     P+   +  +IN    GG
Sbjct: 349 QGAGCVPNAATYSILLNLYGRHGRYDDVRDL--FLEMKVSNTEPNAATYNILINVFGEGG 406

Query: 552 FLQDAQRV-HGLME 564
           + ++   + H ++E
Sbjct: 407 YFKEVVTLFHDMVE 420



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 85/189 (44%), Gaps = 4/189 (2%)

Query: 382 GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR-LGHKPDDRCTASMIA 440
           G I   + + + + +L    L+ + + Q GD  ++   F YM R +  KP++     MI 
Sbjct: 95  GSIARCLDVFKNKLSLNDFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMIG 154

Query: 441 AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
             G++ LL+K   +  E+   G  P   ++T L++  GR      + +LL ++ +   +P
Sbjct: 155 VLGREGLLEKCQEIFDEMPSHGVAPSVFSFTALINAYGRNGQYKSSLELLDRMKKERVSP 214

Query: 501 PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQR 558
                 ++ +  AR G++ + L  L F + + E +  D   +  +++     G   +A+ 
Sbjct: 215 SILTYNTVINSCARGGLDWEELLGL-FAQMRHEGIQADIVTYNTLLSACARRGLGDEAEM 273

Query: 559 VHGLMEAQG 567
           V   M   G
Sbjct: 274 VFRTMNEGG 282


>gi|297733858|emb|CBI15105.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 151/337 (44%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +  E  Q ++  Y+ L+ A A+    ++AE + + MNE GI+PDI T + LV  + K   
Sbjct: 1   MRHEGIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNR 60

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L++  E  + + S G  PD   YN ++ A+  +G  K  M +   M  +G   +   Y  
Sbjct: 61  LEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSI 120

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           LL  + + G       +   M++   +P   +  +L+  +G+ G   +  + F  M+   
Sbjct: 121 LLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEEN 180

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            +P+      +I A GK  L + A  +LL + + G  P    YT +++  G+  L  EA 
Sbjct: 181 VEPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEAL 240

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
                ++E+G  P  +   SL  M+A+ G+ K++   L  +         D F  +I   
Sbjct: 241 VAFNTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKMGQSGVARNRDTFNGVIEAF 300

Query: 548 LAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTF 584
             GG  ++A + +  ME       E+   A++S   F
Sbjct: 301 RQGGQFEEAIKAYVEMEKARCDPDEQTLEAVLSVYCF 337



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 155/333 (46%), Gaps = 7/333 (2%)

Query: 244 AELV---LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
           AE+V   ++E     ++  YS L++   K N LE    +LK+M   G  PDI +  VL+ 
Sbjct: 29  AEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKVSELLKEMESGGSFPDITSYNVLLE 88

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
            ++++G++  A   F  ++  G  P+   Y+ ++  Y   G+      L   M  S  E 
Sbjct: 89  AHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLYGRHGRYDDVRDLFLEMKVSNTEP 148

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
           +   Y  L+  F + G  +    + + M  E  +P +E+   L+ A G+ G  + A+   
Sbjct: 149 NAATYNILINVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLHEDAKKIL 208

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
            +M   G  P  +    +I AYG+  L ++AL     + + G +P   TY  L+    + 
Sbjct: 209 LHMNEKGVVPSSKAYTGVIEAYGQAALYEEALVAFNTMNEVGSKPTVETYNSLIQMFAKG 268

Query: 481 QLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD- 539
            L  E+E +L K+ + G A        + + + + G  ++A++A  ++E +K +  PD+ 
Sbjct: 269 GLYKESEAILLKMGQSGVARNRDTFNGVIEAFRQGGQFEEAIKA--YVEMEKARCDPDEQ 326

Query: 540 -FERIINGLLAGGFLQDAQRVHGLMEAQGFAAS 571
             E +++     G +++++   G ++A G   S
Sbjct: 327 TLEAVLSVYCFAGLVEESEEQFGEIKALGILPS 359



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 139/311 (44%), Gaps = 37/311 (11%)

Query: 242 KVAELVLSEESFQT--NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLV 299
           KV+EL+   ES  +  ++  Y+ L++AHA+   +++A  + ++M   G VP+  T ++L+
Sbjct: 63  KVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILL 122

Query: 300 HMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
           ++Y + G  D  ++ F  ++    +P+   YN +I  +   G  K  ++L   M+   +E
Sbjct: 123 NLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEENVE 182

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
            + E Y  L+ +  + G    A +I   M  +   P+ ++ T ++EAYGQA   ++A   
Sbjct: 183 PNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALVA 242

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNL-------------------------------- 447
           F+ M  +G KP      S+I  + K  L                                
Sbjct: 243 FNTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKMGQSGVARNRDTFNGVIEAFRQ 302

Query: 448 ---LDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKI 504
               ++A+   +E+EK   +P   T   ++       L+ E+E+  G+I  LG  P    
Sbjct: 303 GGQFEEAIKAYVEMEKARCDPDEQTLEAVLSVYCFAGLVEESEEQFGEIKALGILPSVMC 362

Query: 505 QVSLCDMYARA 515
              +  +YA+A
Sbjct: 363 YCMMLAVYAKA 373



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 104/222 (46%), Gaps = 3/222 (1%)

Query: 240 YFK-VAELV--LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTST 296
           YFK V  L   + EE+ + N+  Y  LI A  K    EDA++IL  MNE G+VP     T
Sbjct: 165 YFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYT 224

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
            ++  Y +A   + A  AF ++   G +P  + YNS+I  +   G  K   +++  M  S
Sbjct: 225 GVIEAYGQAALYEEALVAFNTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKMGQS 284

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
           G+ R+ + +  ++ +F Q G    A +    M      P  ++   ++  Y  AG  +++
Sbjct: 285 GVARNRDTFNGVIEAFRQGGQFEEAIKAYVEMEKARCDPDEQTLEAVLSVYCFAGLVEES 344

Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
              F  +  LG  P   C   M+A Y K +  D A  LL E+
Sbjct: 345 EEQFGEIKALGILPSVMCYCMMLAVYAKADRWDDAHQLLDEM 386


>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
 gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 1164

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 161/349 (46%), Gaps = 6/349 (1%)

Query: 223  IDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKK 282
            I ++  L R+ E +  L      L++  + +  +V  YS +I+ + +   L+   ++++K
Sbjct: 676  IHFVCQLGRINEAHHLL------LLMELKGYTPDVISYSTVINGYCRFGELDKVWKLIEK 729

Query: 283  MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
            M + G+ P+  T   ++ +  +   L  A+EAF  +   G  PD  VY +++  +   G 
Sbjct: 730  MKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDGFCKRGD 789

Query: 343  PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402
             +        M +  I      Y A++  F Q GD+  AG++ + M     +P + + T 
Sbjct: 790  IRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTE 849

Query: 403  LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
            L+  Y +AG    A    ++MI+ G  P+     ++I    K+  LD A  LL E+ K G
Sbjct: 850  LMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIG 909

Query: 463  FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522
             +P   TY  +V+ L +   I EA +L+G+    G         +L D Y ++G   KA 
Sbjct: 910  LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQ 969

Query: 523  QALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAAS 571
            + L  +  K  Q     F  ++NG    G L+D +++   M A+G A +
Sbjct: 970  EILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPN 1018



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/358 (21%), Positives = 151/358 (42%), Gaps = 9/358 (2%)

Query: 239  LYFKVAELVLSEESFQTNVRD--------YSKLIDAHAKENCLEDAERILKKMNENGIVP 290
            L  ++ +L  +EE+F   +          Y+ L+D   K   +  A +   +M+   I P
Sbjct: 748  LLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITP 807

Query: 291  DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV 350
            D++T T ++  + + G++  A + F  +   G +PD   +  ++  Y  AG  K    + 
Sbjct: 808  DVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVH 867

Query: 351  DMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410
            + MI +G   +   Y  L+    + GD+  A ++ + M     QP + +   +V    ++
Sbjct: 868  NHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKS 927

Query: 411  GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATY 470
            G+ ++A          G   D     +++ AY K   +DKA  +L E+   G +P   T+
Sbjct: 928  GNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTF 987

Query: 471  TVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEA 530
             VL++      ++ + E+LL  +   G AP       L   Y      K A      + +
Sbjct: 988  NVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCS 1047

Query: 531  KKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQR 588
            +  +     +E ++ G      +++A  +   M+ +GF+ S      LI    F R++
Sbjct: 1048 RGVEPDGKTYENLVKGHCNARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKG-FFKRKK 1104



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 111/244 (45%)

Query: 256  NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
            NV  Y+ LID   KE  L+ A  +L +M + G+ P+I T   +V+   K+GN++ A +  
Sbjct: 878  NVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLV 937

Query: 316  ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
                + G   D   Y +++ AY  +G+      ++  M+  G++ +   +  L+  F   
Sbjct: 938  GEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLH 997

Query: 376  GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
            G +    ++ N M  +   P   +   LV+ Y    +   A + +  M   G +PD +  
Sbjct: 998  GMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTY 1057

Query: 436  ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +++  +     + +A  L  E++  GF    +TY+VL+    + +   EA ++  ++  
Sbjct: 1058 ENLVKGHCNARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFFKRKKFVEAREIFDQMRR 1117

Query: 496  LGEA 499
             G A
Sbjct: 1118 DGLA 1121



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/209 (21%), Positives = 95/209 (45%)

Query: 254  QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
            Q N+  Y+ +++   K   +E+A +++ +    G+  D VT T L+  Y K+G +D+A+E
Sbjct: 911  QPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQE 970

Query: 314  AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
                +   G QP    +N ++  +   G  + G  L++ M+  GI  +   +  L++ + 
Sbjct: 971  ILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYC 1030

Query: 374  QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
               +++ A  I   M     +P  ++   LV+ +  A +  +A   F  M   G      
Sbjct: 1031 IRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAWFLFQEMKGKGFSVSVS 1090

Query: 434  CTASMIAAYGKKNLLDKALNLLLELEKDG 462
              + +I  + K+    +A  +  ++ +DG
Sbjct: 1091 TYSVLIKGFFKRKKFVEAREIFDQMRRDG 1119



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/221 (22%), Positives = 105/221 (47%), Gaps = 6/221 (2%)

Query: 214  WKELLQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEES--FQTNVRDYSKLIDAHAKE 270
            WK  LQP+   + ++++ L +  N +   +  +LV   E+     +   Y+ L+DA+ K 
Sbjct: 906  WKIGLQPNIFTYNSIVNGLCKSGNIE---EAVKLVGEFEAAGLNADTVTYTTLMDAYCKS 962

Query: 271  NCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVY 330
              ++ A+ IL +M   G+ P IVT  VL++ +   G L+  ++    + + G  P+   +
Sbjct: 963  GEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTF 1022

Query: 331  NSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRI 390
            N ++  Y      K   ++   M + G+E   + Y  L++      +++ A  +   M+ 
Sbjct: 1023 NCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAWFLFQEMKG 1082

Query: 391  EEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
            + F  ++ + ++L++ + +     +AR  FD M R G   D
Sbjct: 1083 KGFSVSVSTYSVLIKGFFKRKKFVEAREIFDQMRRDGLAAD 1123



 Score = 40.4 bits (93), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 46/110 (41%)

Query: 256  NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
            N   ++ L+  +   N L+ A  I K M   G+ PD  T   LV  +  A N+  A   F
Sbjct: 1018 NATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAWFLF 1077

Query: 316  ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
            + ++  GF      Y+ +I  +    +      + D M   G+   +EI+
Sbjct: 1078 QEMKGKGFSVSVSTYSVLIKGFFKRKKFVEAREIFDQMRRDGLAADKEIF 1127


>gi|255541334|ref|XP_002511731.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548911|gb|EEF50400.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 244

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/159 (39%), Positives = 97/159 (61%), Gaps = 3/159 (1%)

Query: 164 KWTEVAEKIHERGEMILPEEPKPITGKCKLITDKILS---LEKEEDPSPLLAEWKELLQP 220
           KW E+   I +  +  + E P  +T +CK +  +I+    L +    S LL+ W  +++P
Sbjct: 73  KWAEIGPNITKSQQQAISELPPKMTNRCKTLVTQIICSSYLLQNASLSDLLSSWVRIMKP 132

Query: 221 SRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERIL 280
            R DW+++L +L+     LY +VA+  L EESF+ NVRDY+K+I  + K+  L+DAE  L
Sbjct: 133 RRTDWLSVLKQLKNMEHPLYLEVAKHALVEESFEANVRDYTKVIYCYGKQTQLQDAETTL 192

Query: 281 KKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
             M + G V D VT T ++ MYSKAGNL++A+E FE L+
Sbjct: 193 LDMKKRGFVVDQVTLTTMIDMYSKAGNLNQAEETFEELK 231


>gi|356513567|ref|XP_003525484.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Glycine max]
          Length = 857

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 160/371 (43%), Gaps = 16/371 (4%)

Query: 197 KILSLEKEEDPSPLLAEWKELLQPSR---IDWINLLDRLREQNTQLYFKVAELVLSEESF 253
           ++L+  K+E  SP +  +  ++       +DW  LL    E             +  E  
Sbjct: 190 ELLNGMKQERVSPSILTYNTVINACARGGLDWEGLLGLFAE-------------MRHEGI 236

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           Q +V  Y+ L+ A A     ++AE + + MNE+GIVPDI T + LV  + K   L++  E
Sbjct: 237 QPDVITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSE 296

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
               +   G  PD   YN ++ AY   G  K  M +   M  +G   +   Y  LL  + 
Sbjct: 297 LLREMECGGNLPDITSYNVLLEAYAELGSIKEAMGVFRQMQAAGCVANAATYSVLLNLYG 356

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           + G       +   M++    P   +  +L++ +G+ G   +  + F  M     +P+ +
Sbjct: 357 KHGRYDDVRDLFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMAEENVEPNMQ 416

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
               +I A GK  L + A  +LL + + G  P    YT +++  G+  L  EA  +   +
Sbjct: 417 TYEGLIFACGKGGLYEDAKKILLHMNEKGVVPSSKAYTGVIEAFGQAALYEEALVMFNTM 476

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFL 553
           +E+G  P  +   SL   +AR G+ K+A   L  +     +     F  +I     GG  
Sbjct: 477 NEVGSNPTVETYNSLIHAFARGGLYKEAEAILSRMNESGLKRDVHSFNGVIEAFRQGGQY 536

Query: 554 QDAQRVHGLME 564
           ++A + +  ME
Sbjct: 537 EEAVKSYVEME 547



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 102/219 (46%), Gaps = 3/219 (1%)

Query: 240 YFK-VAELV--LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTST 296
           YFK V  L   ++EE+ + N++ Y  LI A  K    EDA++IL  MNE G+VP     T
Sbjct: 395 YFKEVVTLFHDMAEENVEPNMQTYEGLIFACGKGGLYEDAKKILLHMNEKGVVPSSKAYT 454

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
            ++  + +A   + A   F ++   G  P  + YNS+I A+   G  K   +++  M  S
Sbjct: 455 GVIEAFGQAALYEEALVMFNTMNEVGSNPTVETYNSLIHAFARGGLYKEAEAILSRMNES 514

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
           G++R    +  ++ +F Q G    A +    M     +P   +   ++  Y  AG  D+ 
Sbjct: 515 GLKRDVHSFNGVIEAFRQGGQYEEAVKSYVEMEKANCEPNELTLEAVLSIYCSAGLVDEG 574

Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
              F  +   G  P   C   M+A Y K + L+ A NL+
Sbjct: 575 EEQFQEIKASGILPSVMCYCMMLALYAKNDRLNDAYNLI 613



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 80/375 (21%), Positives = 154/375 (41%), Gaps = 46/375 (12%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           ++  Y+ L++A+A+   +++A  + ++M   G V +  T +VL+++Y K G  D  ++ F
Sbjct: 309 DITSYNVLLEAYAELGSIKEAMGVFRQMQAAGCVANAATYSVLLNLYGKHGRYDDVRDLF 368

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             ++     PD   YN +I  +   G  K  ++L   M    +E + + Y  L+ +  + 
Sbjct: 369 LEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMAEENVEPNMQTYEGLIFACGKG 428

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G    A +I   M  +   P+ ++ T ++EA+GQA   ++A   F+ M  +G  P     
Sbjct: 429 GLYEDAKKILLHMNEKGVVPSSKAYTGVIEAFGQAALYEEALVMFNTMNEVGSNPTVETY 488

Query: 436 ASMIAAYGKKNLLDKALNLL-----------------------------------LELEK 460
            S+I A+ +  L  +A  +L                                   +E+EK
Sbjct: 489 NSLIHAFARGGLYKEAEAILSRMNESGLKRDVHSFNGVIEAFRQGGQYEEAVKSYVEMEK 548

Query: 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKK 520
              EP   T   ++       L++E E+   +I   G  P       +  +YA+     +
Sbjct: 549 ANCEPNELTLEAVLSIYCSAGLVDEGEEQFQEIKASGILPSVMCYCMMLALYAK---NDR 605

Query: 521 ALQALGFLEAKKEQMGPDDFERIINGLLAGGF-----LQDAQRVHGLMEAQGFAASERLK 575
              A   ++A    M   D  ++I  ++ G F      Q  + V   + ++G     R  
Sbjct: 606 LNDAYNLIDAMI-TMRVSDIHQVIGQMIKGDFDDESNWQIVEYVFDKLNSEGCGLGMRFY 664

Query: 576 VALISS--QTFNRQR 588
            AL+ +    F R+R
Sbjct: 665 NALLEALWCMFQRER 679



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 75/369 (20%), Positives = 147/369 (39%), Gaps = 19/369 (5%)

Query: 214 WKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCL 273
           +KE  Q  R DW   L   +    Q++ K  E +            ++ +I    +E  L
Sbjct: 105 FKEFAQ--RGDWQRSLRLFKYMQRQIWCKPNEHI------------HTIMITLLGREGLL 150

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           +    +  +M  NG+V  + + T +++ Y + G    + E    ++     P    YN++
Sbjct: 151 DKCREVFDEMPSNGVVRTVYSYTAIINAYGRNGQFHASLELLNGMKQERVSPSILTYNTV 210

Query: 334 IMAYVNAGQPKLGM-SLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           I A    G    G+  L   M   GI+     Y  LL + A  G    A  +   M    
Sbjct: 211 INACARGGLDWEGLLGLFAEMRHEGIQPDVITYNTLLGACAHRGLGDEAEMVFRTMNESG 270

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P + + + LV+ +G+    ++       M   G+ PD      ++ AY +   + +A+
Sbjct: 271 IVPDINTYSYLVQTFGKLNRLEKVSELLREMECGGNLPDITSYNVLLEAYAELGSIKEAM 330

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
            +  +++  G     ATY+VL++  G+    ++   L  ++      P       L  ++
Sbjct: 331 GVFRQMQAAGCVANAATYSVLLNLYGKHGRYDDVRDLFLEMKVSNTDPDAGTYNILIQVF 390

Query: 513 ARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAA 570
              G  K+ +    F +  +E + P+   +E +I     GG  +DA+++   M  +G   
Sbjct: 391 GEGGYFKEVVTL--FHDMAEENVEPNMQTYEGLIFACGKGGLYEDAKKILLHMNEKGVVP 448

Query: 571 SERLKVALI 579
           S +    +I
Sbjct: 449 SSKAYTGVI 457



 Score = 47.4 bits (111), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 3/118 (2%)

Query: 241 FKVAELVLS---EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTV 297
           +K AE +LS   E   + +V  ++ +I+A  +    E+A +   +M +    P+ +T   
Sbjct: 501 YKEAEAILSRMNESGLKRDVHSFNGVIEAFRQGGQYEEAVKSYVEMEKANCEPNELTLEA 560

Query: 298 LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMIT 355
           ++ +Y  AG +D  +E F+ +++ G  P    Y  M+  Y    +     +L+D MIT
Sbjct: 561 VLSIYCSAGLVDEGEEQFQEIKASGILPSVMCYCMMLALYAKNDRLNDAYNLIDAMIT 618



 Score = 47.0 bits (110), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 66/142 (46%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
            ++E      V  Y+ LI A A+    ++AE IL +MNE+G+  D+ +   ++  + + G
Sbjct: 475 TMNEVGSNPTVETYNSLIHAFARGGLYKEAEAILSRMNESGLKRDVHSFNGVIEAFRQGG 534

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
             + A +++  +     +P++    +++  Y +AG    G      +  SGI  S   Y 
Sbjct: 535 QYEEAVKSYVEMEKANCEPNELTLEAVLSIYCSAGLVDEGEEQFQEIKASGILPSVMCYC 594

Query: 367 ALLRSFAQCGDVRGAGQITNIM 388
            +L  +A+   +  A  + + M
Sbjct: 595 MMLALYAKNDRLNDAYNLIDAM 616


>gi|297842227|ref|XP_002888995.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297334836|gb|EFH65254.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 863

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/393 (24%), Positives = 163/393 (41%), Gaps = 16/393 (4%)

Query: 197 KILSLEKEEDPSPLLAEWKELLQPSR---IDWINLLDRLREQNTQLYFKVAELVLSEESF 253
           ++L   K +  SP +  +  ++       +DW  LL    E             +  E  
Sbjct: 197 ELLDRMKNDKISPSILTYNTVINACARGGLDWEGLLGLFAE-------------MRHEGI 243

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           Q ++  Y+ L+ A A     ++AE + + MN+ GIVPD+ T + LV  + K   L++  +
Sbjct: 244 QPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVSD 303

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
               + S G  PD   YN ++ AY  +G  K  M +   M  +G   +   Y  LL  F 
Sbjct: 304 LLSEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFG 363

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           Q G      Q+   M+     P   +  +L+E +G+ G   +  + F  M+    +PD  
Sbjct: 364 QSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDME 423

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
               +I A GK  L + A  +L  +  +   P    YT +++  G+  L  EA      +
Sbjct: 424 TYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTM 483

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFL 553
            E+G  P  +   SL   +AR G+ K++   L  L         D F   I     GG  
Sbjct: 484 HEVGSNPSIETYHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKF 543

Query: 554 QDAQRVHGLMEAQGFAASERLKVALISSQTFNR 586
           ++A + +  ME       ER   A++S  +F R
Sbjct: 544 EEAVKTYVDMEKSRCDPDERTLEAVLSVYSFAR 576



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 121/279 (43%), Gaps = 6/279 (2%)

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL 349
           P+    T+++ +  + G LD+  E F+ + S G       Y ++I AY   G+ +  + L
Sbjct: 139 PNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLEL 198

Query: 350 VDMMITSGIERSEEIYLALLRSFAQCG-DVRGAGQITNIMRIEEFQPTLESCTLLVEAYG 408
           +D M    I  S   Y  ++ + A+ G D  G   +   MR E  QP + +   L+ A  
Sbjct: 199 LDRMKNDKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACA 258

Query: 409 QAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPA 468
             G  D+A   F  M   G  PD    + ++  +GK   L+K  +LL E+   G  P   
Sbjct: 259 IRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVSDLLSEMASGGSLPDIT 318

Query: 469 TYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFL 528
           +Y VL++   +   I EA  +  ++   G  P       L +++ ++G      Q   FL
Sbjct: 319 SYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQL--FL 376

Query: 529 EAKKEQMGPD--DFERIINGLLAGGFLQDAQRV-HGLME 564
           E K     PD   +  +I     GG+ ++   + H ++E
Sbjct: 377 EMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVE 415



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 99/222 (44%), Gaps = 3/222 (1%)

Query: 240 YFK-VAELV--LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTST 296
           YFK V  L   + EE+ + ++  Y  +I A  K    EDA +IL+ M  N IVP     T
Sbjct: 402 YFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYT 461

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
            ++  + +A   + A  AF ++   G  P  + Y+S++ ++   G  K   +++  ++ S
Sbjct: 462 GVIEAFGQAALYEEALVAFNTMHEVGSNPSIETYHSLLYSFARGGLVKESEAILSRLVDS 521

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
           GI R+ + + A + ++ Q G    A +    M      P   +   ++  Y  A   D+ 
Sbjct: 522 GIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDEC 581

Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
           R  F+ M      P   C   M+A YGK    D    LL E+
Sbjct: 582 REQFEEMKASDILPSIMCYCMMLAVYGKTERWDDVNELLEEM 623



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/233 (18%), Positives = 95/233 (40%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N   YS L++   +    +D  ++  +M  +   PD  T  +L+ ++ + G        F
Sbjct: 351 NANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLF 410

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +     +PD + Y  +I A    G  +    ++  M  + I  S + Y  ++ +F Q 
Sbjct: 411 HDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQA 470

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
                A    N M      P++E+   L+ ++ + G   ++ +    ++  G   +    
Sbjct: 471 ALYEEALVAFNTMHEVGSNPSIETYHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTF 530

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQ 488
            + I AY +    ++A+   +++EK   +P   T   ++      +L++E  +
Sbjct: 531 NAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDECRE 583



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 93/211 (44%), Gaps = 6/211 (2%)

Query: 382 GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR-LGHKPDDRCTASMIA 440
           G I   + I + + +L    L+ + +   GD  ++   F YM R +  KP++     MI+
Sbjct: 90  GSIARCLDIFKNKLSLNDFALVFKEFAGRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMIS 149

Query: 441 AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
             G++ LLDK L +  E+   G      +YT L++  GR      + +LL ++     +P
Sbjct: 150 LLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNDKISP 209

Query: 501 PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQR 558
                 ++ +  AR G++ + L  L F E + E + PD   +  +++     G   +A+ 
Sbjct: 210 SILTYNTVINACARGGLDWEGLLGL-FAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEM 268

Query: 559 VHGLMEAQGFAASERLKVALISSQTFNRQRQ 589
           V   M   G          L+  +TF + R+
Sbjct: 269 VFRTMNDGGIVPDLTTYSHLV--ETFGKLRR 297


>gi|15218241|ref|NP_172439.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097039|sp|O04491.1|PPR26_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g09680
 gi|2160161|gb|AAB60724.1| F21M12.7 gene product [Arabidopsis thaliana]
 gi|332190358|gb|AEE28479.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 607

 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 139/297 (46%), Gaps = 22/297 (7%)

Query: 215 KELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQT-----------NVRDYSKL 263
           K  LQP+ + +  L++         Y KV  L   +E F+            +V  YS L
Sbjct: 268 KRSLQPTVVSFNTLING--------YCKVGNL---DEGFRLKHQMEKSRTRPDVFTYSAL 316

Query: 264 IDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGF 323
           I+A  KEN ++ A  +  +M + G++P+ V  T L+H +S+ G +D  KE+++ + S G 
Sbjct: 317 INALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGL 376

Query: 324 QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQ 383
           QPD  +YN+++  +   G      ++VD MI  G+   +  Y  L+  F + GDV  A +
Sbjct: 377 QPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALE 436

Query: 384 ITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYG 443
           I   M     +      + LV    + G    A      M+R G KPDD     M+ A+ 
Sbjct: 437 IRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFC 496

Query: 444 KKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
           KK        LL E++ DG  P   TY VL++ L +L  +  A+ LL  +  +G  P
Sbjct: 497 KKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVP 553



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 83/378 (21%), Positives = 167/378 (44%), Gaps = 11/378 (2%)

Query: 187 ITGKCKLITDKILSLEKEEDPSPLLAEWKELLQPSRID-----WINLLDRLREQNTQLYF 241
           +T  C  + D ++    +    P   +   L +  R D       NLLDR+ + N     
Sbjct: 165 VTPMCGFLVDALMITYTDLGFIPDAIQCFRLSRKHRFDVPIRGCGNLLDRMMKLNPTGTI 224

Query: 242 KVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM 301
               + + +  F  NV  ++ L++   KE  + DA+++  ++ +  + P +V+   L++ 
Sbjct: 225 WGFYMEILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLING 284

Query: 302 YSKAGNLD---RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
           Y K GNLD   R K   E  R+   +PD   Y+++I A     +      L D M   G+
Sbjct: 285 YCKVGNLDEGFRLKHQMEKSRT---RPDVFTYSALINALCKENKMDGAHGLFDEMCKRGL 341

Query: 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418
             ++ I+  L+   ++ G++    +    M  +  QP +     LV  + + GD   AR+
Sbjct: 342 IPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARN 401

Query: 419 NFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLG 478
             D MIR G +PD     ++I  + +   ++ AL +  E++++G E     ++ LV  + 
Sbjct: 402 IVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMC 461

Query: 479 RLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
           +   + +AE+ L ++   G  P       + D + + G  +   + L  +++        
Sbjct: 462 KEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVV 521

Query: 539 DFERIINGLLAGGFLQDA 556
            +  ++NGL   G +++A
Sbjct: 522 TYNVLLNGLCKLGQMKNA 539



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 2/153 (1%)

Query: 218 LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L+P +I +  L+D   R  + +   ++ +  + +   + +   +S L+    KE  + DA
Sbjct: 411 LRPDKITYTTLIDGFCRGGDVETALEIRK-EMDQNGIELDRVGFSALVCGMCKEGRVIDA 469

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
           ER L++M   GI PD VT T+++  + K G+     +  + ++S G  P    YN ++  
Sbjct: 470 ERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNG 529

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
               GQ K    L+D M+  G+   +  Y  LL
Sbjct: 530 LCKLGQMKNADMLLDAMLNIGVVPDDITYNTLL 562



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 57/309 (18%), Positives = 113/309 (36%), Gaps = 35/309 (11%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           +  F   +R    L+D   K N          ++ + G   ++    +L++ + K GN+ 
Sbjct: 198 KHRFDVPIRGCGNLLDRMMKLNPTGTIWGFYMEILDAGFPLNVYVFNILMNKFCKEGNIS 257

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A++ F+ +     QP    +N++I  Y   G    G  L   M     E+S        
Sbjct: 258 DAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQM-----EKSRT------ 306

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
                                   +P + + + L+ A  +    D A   FD M + G  
Sbjct: 307 ------------------------RPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLI 342

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           P+D    ++I  + +   +D       ++   G +P    Y  LV+   +   +  A  +
Sbjct: 343 PNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNI 402

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLA 549
           +  +   G  P      +L D + R G  + AL+    ++    ++    F  ++ G+  
Sbjct: 403 VDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCK 462

Query: 550 GGFLQDAQR 558
            G + DA+R
Sbjct: 463 EGRVIDAER 471


>gi|15221411|ref|NP_177623.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
 gi|75194055|sp|Q9S7Q2.1|PP124_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g74850, chloroplastic; AltName: Full=Protein PLASTID
           TRANSCRIPTIONALLY ACTIVE 2; Flags: Precursor
 gi|5882738|gb|AAD55291.1|AC008263_22 Contains 3 PF|01535 DUF17 domains [Arabidopsis thaliana]
 gi|12323908|gb|AAG51934.1|AC013258_28 hypothetical protein; 81052-84129 [Arabidopsis thaliana]
 gi|332197518|gb|AEE35639.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
          Length = 862

 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 99/393 (25%), Positives = 163/393 (41%), Gaps = 16/393 (4%)

Query: 197 KILSLEKEEDPSPLLAEWKELLQPSR---IDWINLLDRLREQNTQLYFKVAELVLSEESF 253
           ++L   K E  SP +  +  ++       +DW  LL    E             +  E  
Sbjct: 197 ELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAE-------------MRHEGI 243

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           Q ++  Y+ L+ A A     ++AE + + MN+ GIVPD+ T + LV  + K   L++  +
Sbjct: 244 QPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCD 303

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
               + S G  PD   YN ++ AY  +G  K  M +   M  +G   +   Y  LL  F 
Sbjct: 304 LLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFG 363

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           Q G      Q+   M+     P   +  +L+E +G+ G   +  + F  M+    +PD  
Sbjct: 364 QSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDME 423

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
               +I A GK  L + A  +L  +  +   P    YT +++  G+  L  EA      +
Sbjct: 424 TYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTM 483

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFL 553
            E+G  P  +   SL   +AR G+ K++   L  L         D F   I     GG  
Sbjct: 484 HEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKF 543

Query: 554 QDAQRVHGLMEAQGFAASERLKVALISSQTFNR 586
           ++A + +  ME       ER   A++S  +F R
Sbjct: 544 EEAVKTYVDMEKSRCDPDERTLEAVLSVYSFAR 576



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 121/279 (43%), Gaps = 6/279 (2%)

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL 349
           P+    T+++ +  + G LD+  E F+ + S G       Y ++I AY   G+ +  + L
Sbjct: 139 PNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLEL 198

Query: 350 VDMMITSGIERSEEIYLALLRSFAQCG-DVRGAGQITNIMRIEEFQPTLESCTLLVEAYG 408
           +D M    I  S   Y  ++ + A+ G D  G   +   MR E  QP + +   L+ A  
Sbjct: 199 LDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACA 258

Query: 409 QAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPA 468
             G  D+A   F  M   G  PD    + ++  +GK   L+K  +LL E+   G  P   
Sbjct: 259 IRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDIT 318

Query: 469 TYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFL 528
           +Y VL++   +   I EA  +  ++   G  P       L +++ ++G      Q   FL
Sbjct: 319 SYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQL--FL 376

Query: 529 EAKKEQMGPD--DFERIINGLLAGGFLQDAQRV-HGLME 564
           E K     PD   +  +I     GG+ ++   + H ++E
Sbjct: 377 EMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVE 415



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 99/222 (44%), Gaps = 3/222 (1%)

Query: 240 YFK-VAELV--LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTST 296
           YFK V  L   + EE+ + ++  Y  +I A  K    EDA +IL+ M  N IVP     T
Sbjct: 402 YFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYT 461

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
            ++  + +A   + A  AF ++   G  P  + ++S++ ++   G  K   +++  ++ S
Sbjct: 462 GVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDS 521

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
           GI R+ + + A + ++ Q G    A +    M      P   +   ++  Y  A   D+ 
Sbjct: 522 GIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDEC 581

Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
           R  F+ M      P   C   M+A YGK    D    LL E+
Sbjct: 582 REQFEEMKASDILPSIMCYCMMLAVYGKTERWDDVNELLEEM 623



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/233 (18%), Positives = 95/233 (40%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N   YS L++   +    +D  ++  +M  +   PD  T  +L+ ++ + G        F
Sbjct: 351 NANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLF 410

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +     +PD + Y  +I A    G  +    ++  M  + I  S + Y  ++ +F Q 
Sbjct: 411 HDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQA 470

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
                A    N M      P++E+   L+ ++ + G   ++ +    ++  G   +    
Sbjct: 471 ALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTF 530

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQ 488
            + I AY +    ++A+   +++EK   +P   T   ++      +L++E  +
Sbjct: 531 NAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDECRE 583



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 93/211 (44%), Gaps = 6/211 (2%)

Query: 382 GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR-LGHKPDDRCTASMIA 440
           G I   + I + + +L    L+ + +   GD  ++   F YM R +  KP++     MI+
Sbjct: 90  GSIARCLDIFKNKLSLNDFALVFKEFAGRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMIS 149

Query: 441 AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
             G++ LLDK L +  E+   G      +YT L++  GR      + +LL ++     +P
Sbjct: 150 LLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISP 209

Query: 501 PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQR 558
                 ++ +  AR G++ + L  L F E + E + PD   +  +++     G   +A+ 
Sbjct: 210 SILTYNTVINACARGGLDWEGLLGL-FAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEM 268

Query: 559 VHGLMEAQGFAASERLKVALISSQTFNRQRQ 589
           V   M   G          L+  +TF + R+
Sbjct: 269 VFRTMNDGGIVPDLTTYSHLV--ETFGKLRR 297


>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
 gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 130/251 (51%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E+    +V  Y+ +++   KE  L DA+++  +M E G +PD  T T L+H + + GN+ 
Sbjct: 321 EQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMT 380

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
           +A   F ++     +PD   YN++I  +   G+ +    L D MI+  I  +   Y  L+
Sbjct: 381 KALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILI 440

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
            ++   G V  A ++ ++M  +  +PTL +C  +++ Y ++GD  +A      MI  G  
Sbjct: 441 NAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVA 500

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     ++I  + +++ +DKA   + ++EK+G  P   TY V+++   R   + EAE +
Sbjct: 501 PDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQGRMQEAELV 560

Query: 490 LGKISELGEAP 500
           L K+ E G  P
Sbjct: 561 LRKMIEKGINP 571



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 73/336 (21%), Positives = 141/336 (41%), Gaps = 12/336 (3%)

Query: 222 RIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILK 281
           +IDW+ L   +  +            +     + NV   + +++A  K+   +D +  L 
Sbjct: 95  KIDWVELAWEVHRE------------VVRSGIELNVYTLNIMVNALCKDGKFDDVKSFLS 142

Query: 282 KMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAG 341
           +M  NGI  D+VT   L+  Y + G L+ A E   S+   G +P    YN++I      G
Sbjct: 143 EMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKG 202

Query: 342 QPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCT 401
           +      ++  M+  G+      Y  LL    +  +   A +I   M  +   P L S +
Sbjct: 203 RYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFS 262

Query: 402 LLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD 461
            L+  + +    DQA   F  M + G  PD+     ++  Y +   + +AL +  E+ + 
Sbjct: 263 SLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQ 322

Query: 462 GFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKA 521
           G       Y  +++ L + +++ +A++L  ++ E G  P F    +L   + + G   KA
Sbjct: 323 GCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKA 382

Query: 522 LQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQ 557
           L   G +  +  +     +  +I+G    G ++ A 
Sbjct: 383 LSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKAS 418



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 130/291 (44%), Gaps = 4/291 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+    + +   +A+ I  +M   G+VPD+V+ + L+ ++S+  +LD+A   F  ++
Sbjct: 226 YNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMK 285

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  PD  +Y  ++  Y   G     + + D M+  G       Y  +L    +   + 
Sbjct: 286 KFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLT 345

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++ + M      P   + T L+  + Q G+  +A S F  M +   KPD     ++I
Sbjct: 346 DADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLI 405

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             + K   ++KA  L   +      P   TY +L++    +  ++EA +L   + E G  
Sbjct: 406 DGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIK 465

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLL 548
           P      ++   Y R+G   KA + LG + AK   + PD   +  +ING +
Sbjct: 466 PTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKG--VAPDHISYNTLINGFV 514



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/218 (21%), Positives = 93/218 (42%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +++ + + ++  Y+ LID   K   +E A  +   M    I P+ +T  +L++ Y   G+
Sbjct: 389 MTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGH 448

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A   ++ +   G +P     N++I  Y  +G        +  MI  G+      Y  
Sbjct: 449 VSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNT 508

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+  F +  ++  A    N M  E   P + +  +++  + + G   +A      MI  G
Sbjct: 509 LINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQGRMQEAELVLRKMIEKG 568

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
             PD     ++I  +  ++ L++A     E+ + GF P
Sbjct: 569 INPDRSTYTALINGHVTQDNLNEAFRFHDEMLQRGFAP 606



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/324 (19%), Positives = 126/324 (38%), Gaps = 41/324 (12%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           +L  + +  ++   + L+    K + +E A  + +++  +GI  ++ T  ++V+   K G
Sbjct: 73  ILRSKGYLVSINACNSLLGGLVKIDWVELAWEVHREVVRSGIELNVYTLNIMVNALCKDG 132

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
             D  K     +  +G   D   YN++I AY   G                         
Sbjct: 133 KFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREG------------------------- 167

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            LL           A +I N M  +  +P+L +   ++    + G   +A+     M+ +
Sbjct: 168 -LLEE---------AFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNI 217

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G  PD     +++    +++   +A  +  E+ + G  P   +++ L+    R + +++A
Sbjct: 218 GLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQA 277

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD---FERI 543
                 + + G  P   I   L   Y R G     L+AL   +   EQ    D   +  I
Sbjct: 278 LVYFRDMKKFGLVPDNVIYTVLMHGYCRNG---NMLEALKIRDEMLEQGCVLDVIAYNTI 334

Query: 544 INGLLAGGFLQDAQRVHGLMEAQG 567
           +NGL     L DA ++   M  +G
Sbjct: 335 LNGLCKEKMLTDADKLFDEMVERG 358



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 2/110 (1%)

Query: 218 LQPSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           + P  I +  L++  +RE N    F      + +E    ++  Y+ +++   ++  +++A
Sbjct: 499 VAPDHISYNTLINGFVREDNMDKAFLWIN-KMEKEGLLPDIITYNVVMNGFCRQGRMQEA 557

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPD 326
           E +L+KM E GI PD  T T L++ +    NL+ A    + +   GF PD
Sbjct: 558 ELVLRKMIEKGINPDRSTYTALINGHVTQDNLNEAFRFHDEMLQRGFAPD 607



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 30/149 (20%), Positives = 62/149 (41%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           V+ E+  +  +   + +I  + +      A+  L +M   G+ PD ++   L++ + +  
Sbjct: 458 VMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVRED 517

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           N+D+A      +   G  PD   YN ++  +   G+ +    ++  MI  GI      Y 
Sbjct: 518 NMDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQGRMQEAELVLRKMIEKGINPDRSTYT 577

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
           AL+       ++  A +  + M    F P
Sbjct: 578 ALINGHVTQDNLNEAFRFHDEMLQRGFAP 606


>gi|242060656|ref|XP_002451617.1| hypothetical protein SORBIDRAFT_04g004710 [Sorghum bicolor]
 gi|241931448|gb|EES04593.1| hypothetical protein SORBIDRAFT_04g004710 [Sorghum bicolor]
          Length = 593

 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 159/344 (46%), Gaps = 5/344 (1%)

Query: 224 DWINLLDRLR-EQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKK 282
           D +N+  +LR  +  +    V E +L   SF+ ++  Y+ LIDA+ ++  L  AE I   
Sbjct: 131 DIVNVAVQLRLNRQWEPIITVCEWILYRSSFRPDIICYNLLIDAYGQKRQLNKAESIYMA 190

Query: 283 MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
           + E   VP   T  +L+  Y  +G L RA+     ++ +G  P   VYN+ +   + A  
Sbjct: 191 LLEAHCVPTEDTYALLLRAYCNSGQLHRAEGVISEMQKNGLPPTATVYNAYLDGLLKARC 250

Query: 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402
            +  + +   M       + E Y  ++  + +      + ++ N M+    +P + + T 
Sbjct: 251 SEKAVEVYQRMKKERCRTNTETYTLMINVYGKAKQPMSSLKVFNEMKTIGCKPNICTYTA 310

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           LV A+ + G  ++A   F+ M + GH+PD     +++ AY +  L   A  +   +E  G
Sbjct: 311 LVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMG 370

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522
            EP  A+Y +LVD  GR  L  EAE    ++ + G  P  K  + L   +A++G   +  
Sbjct: 371 CEPDRASYNILVDAYGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHAKSGNVARCE 430

Query: 523 QALGFLEAKKEQMGPDDF--ERIINGLLAGGFLQDAQRVHGLME 564
           + +  L   K  + PD F    ++N     G L D +R+ G ME
Sbjct: 431 EVMAQLH--KSGLRPDTFALNAMLNAYGRAGRLDDMERLLGAME 472



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 137/285 (48%), Gaps = 17/285 (5%)

Query: 215 KELLQPSRIDWINLLD-----RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAK 269
           K  L P+   +   LD     R  E+  ++Y +     + +E  +TN   Y+ +I+ + K
Sbjct: 228 KNGLPPTATVYNAYLDGLLKARCSEKAVEVYQR-----MKKERCRTNTETYTLMINVYGK 282

Query: 270 ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKV 329
                 + ++  +M   G  P+I T T LV+ +++ G  ++A+E FE ++  G +PD   
Sbjct: 283 AKQPMSSLKVFNEMKTIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYA 342

Query: 330 YNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389
           YN+++ AY  AG P+    +  +M   G E     Y  L+ ++ + G  + A      ++
Sbjct: 343 YNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAYGRAGLHQEAEAAFQELK 402

Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD 449
            +  +PT++S  LL+ A+ ++G+  +       + + G +PD     +M+ AYG+   LD
Sbjct: 403 QQGMRPTMKSHMLLLSAHAKSGNVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLD 462

Query: 450 KALNLLLELEKDGFE-------PGPATYTVLVDWLGRLQLINEAE 487
               LL  +E+ G +       P  +TY VLV+  GR   ++  E
Sbjct: 463 DMERLLGAMERGGDDDAGGGAAPDTSTYNVLVNVYGRAGYLDRME 507



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 117/269 (43%), Gaps = 8/269 (2%)

Query: 318 LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
           L    F+PD   YN +I AY    Q     S+   ++ +    +E+ Y  LLR++   G 
Sbjct: 156 LYRSSFRPDIICYNLLIDAYGQKRQLNKAESIYMALLEAHCVPTEDTYALLLRAYCNSGQ 215

Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
           +  A  + + M+     PT       ++   +A   ++A   +  M +   + +      
Sbjct: 216 LHRAEGVISEMQKNGLPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTETYTL 275

Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           MI  YGK      +L +  E++  G +P   TYT LV+   R  L  +AE++  ++ + G
Sbjct: 276 MINVYGKAKQPMSSLKVFNEMKTIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAG 335

Query: 498 EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG--PD--DFERIINGLLAGGFL 553
             P      +L + Y+RAG+ + A +    +    E MG  PD   +  +++     G  
Sbjct: 336 HEPDVYAYNALMEAYSRAGLPQGASEIFSLM----EHMGCEPDRASYNILVDAYGRAGLH 391

Query: 554 QDAQRVHGLMEAQGFAASERLKVALISSQ 582
           Q+A+     ++ QG   + +  + L+S+ 
Sbjct: 392 QEAEAAFQELKQQGMRPTMKSHMLLLSAH 420



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 106/261 (40%), Gaps = 42/261 (16%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  Y+ L++A A+E   E AE + ++M + G  PD+     L+  YS+AG    A E F
Sbjct: 304 NICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIF 363

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G +PD+  YN ++ AY  AG  +   +    +   G+  + + ++ LL + A+ 
Sbjct: 364 SLMEHMGCEPDRASYNILVDAYGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHAKS 423

Query: 376 GDVRG-----------------------------AGQITNIMRI-------------EEF 393
           G+V                               AG++ ++ R+                
Sbjct: 424 GNVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLLGAMERGGDDDAGGGA 483

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
            P   +  +LV  YG+AG  D+  + F  +   G   D     S I AY +K    + L 
Sbjct: 484 APDTSTYNVLVNVYGRAGYLDRMEAAFRALAARGLAADVVTWTSRIGAYARKKEYGRCLE 543

Query: 454 LLLELEKDGFEPGPATYTVLV 474
           +  E+   G  P   T  VL+
Sbjct: 544 IFEEMVDAGCYPDAGTAKVLL 564



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 15/149 (10%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIV-------PDIVTSTVLVH 300
           L  ++F  N      +++A+ +   L+D ER+L  M   G         PD  T  VLV+
Sbjct: 441 LRPDTFALNA-----MLNAYGRAGRLDDMERLLGAMERGGDDDAGGGAAPDTSTYNVLVN 495

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
           +Y +AG LDR + AF +L + G   D   + S I AY    +    + + + M+ +G   
Sbjct: 496 VYGRAGYLDRMEAAFRALAARGLAADVVTWTSRIGAYARKKEYGRCLEIFEEMVDAGCYP 555

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMR 389
                  LL   A C D R   Q+T I+R
Sbjct: 556 DAGTAKVLL---AACSDERQVEQVTAIVR 581


>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 621

 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 141/312 (45%), Gaps = 35/312 (11%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  Y+ L+D   K    ++A R+L +M +NG VPD+ T   L+    KAG L  A   F
Sbjct: 78  NLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFTLF 137

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +R  G  PD   YNS+I      G+ +  M L++ M   G       Y +L+    + 
Sbjct: 138 AEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKD 197

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G+   A ++   M+    +P   + T L++A G+AG  D A    D M   G KP     
Sbjct: 198 GETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTY 257

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++IA +GK   L +A NLL E++++G +P   TY+ L+  L +   ++EA Q+L K+ +
Sbjct: 258 NALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEK 317

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
            G  PP  I                                   +  +INGL   G L D
Sbjct: 318 EG-CPPDTIT----------------------------------YNTLINGLGKAGLLND 342

Query: 556 AQRVHGLMEAQG 567
           A R+   M+++G
Sbjct: 343 AGRLFDRMKSKG 354



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 144/316 (45%), Gaps = 4/316 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +VR Y+ LI    K   L +A  +  +M E G VPD  T   L++   K G   +A E  
Sbjct: 113 DVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELL 172

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E +  HG  PD   Y+S+I      G+      L   M   G +     + AL+ +  + 
Sbjct: 173 EEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKA 232

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G V  A ++ + M+    +P + +   L+  +G+ GD  +A +  D M R G KPD    
Sbjct: 233 GRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTY 292

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
           + +I    K + LD+A  +L ++EK+G  P   TY  L++ LG+  L+N+A +L  ++  
Sbjct: 293 SCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKS 352

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFE--RIINGLLAGGFL 553
            G  P      +L     +A   + A   + F E +   + PD F    II  L   G +
Sbjct: 353 KGCNPDVVTYSTLITALGKAARVESA--CVLFEEMESVGIQPDLFTYCSIITVLGKAGQV 410

Query: 554 QDAQRVHGLMEAQGFA 569
            DA R+   M  +G +
Sbjct: 411 DDADRLFSEMRGKGLS 426



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 133/294 (45%), Gaps = 4/294 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  YS LI    K+     A ++ ++M   G  PD +T T L+    KAG +D A E  
Sbjct: 183 DVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELL 242

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + ++  G +P    YN++I  +   G      +L+D M  +G +     Y  L+    + 
Sbjct: 243 DEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKA 302

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
             +  A Q+   M  E   P   +   L+   G+AG  + A   FD M   G  PD    
Sbjct: 303 SQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTY 362

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
           +++I A GK   ++ A  L  E+E  G +P   TY  ++  LG+   +++A++L  ++  
Sbjct: 363 STLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRG 422

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGL 547
            G +P      +  +   R G  K+A +   F + K+  + PD   ++ ++ GL
Sbjct: 423 KGLSPDVITYNAFLNSLGRGGRFKEARKI--FEDMKESGLLPDVATYDALLLGL 474



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 87/378 (23%), Positives = 153/378 (40%), Gaps = 54/378 (14%)

Query: 224 DWINLLDRLREQNTQL-----------YFKVAELV--------LSEESFQTNVRDYSKLI 264
           D + LLD ++E+  +            + KV +LV        +     + +V  YS LI
Sbjct: 237 DALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLI 296

Query: 265 DAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQ 324
               K + L++A ++LKKM + G  PD +T   L++   KAG L+ A   F+ ++S G  
Sbjct: 297 TGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCN 356

Query: 325 PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQI 384
           PD   Y+++I A   A + +    L + M + GI+     Y +++    + G V  A ++
Sbjct: 357 PDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRL 416

Query: 385 TNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGK 444
            + MR +   P + +    + + G+ G   +AR  F+ M   G  PD     +++    K
Sbjct: 417 FSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSK 476

Query: 445 KNLLDKALNLLLEL-----------------------------------EKDGFEPGPAT 469
              +D A  LL EL                                      G  PG ++
Sbjct: 477 TKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGASS 536

Query: 470 YTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLE 529
           Y  L+D L +   ++EA   L  + E G  P      SL     + G    A + L  + 
Sbjct: 537 YNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQIDTAFELLEEMS 596

Query: 530 AKKEQMGPDDFERIINGL 547
            +  ++ P  +  ++  L
Sbjct: 597 KRGLKLSPRSYSNLVRKL 614



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 130/310 (41%), Gaps = 2/310 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E   +  V  Y+ LI    K   L +A  +L +M  NG  PD+VT + L+    KA  
Sbjct: 245 MKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQ 304

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           LD A +  + +   G  PD   YN++I     AG       L D M + G       Y  
Sbjct: 305 LDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYST 364

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+ +  +   V  A  +   M     QP L +   ++   G+AG  D A   F  M   G
Sbjct: 365 LITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKG 424

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD     + + + G+     +A  +  ++++ G  P  ATY  L+  L + + +++A 
Sbjct: 425 LSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDAC 484

Query: 488 QLLGKISELGEA-PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
            LL ++ E G A    K    L ++    G   +A + L F  +K    G   +  +I+ 
Sbjct: 485 GLLKELIEQGCAFDSLKFDECL-EILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDA 543

Query: 547 LLAGGFLQDA 556
           L   G + +A
Sbjct: 544 LAKAGRVSEA 553



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 107/241 (44%), Gaps = 8/241 (3%)

Query: 247 VLSEE----SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMY 302
           VL EE      Q ++  Y  +I    K   ++DA+R+  +M   G+ PD++T    ++  
Sbjct: 380 VLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSL 439

Query: 303 SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE 362
            + G    A++ FE ++  G  PD   Y+++++      +      L+  +I  G     
Sbjct: 440 GRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDS 499

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
             +   L      G+V  A ++      +   P   S   L++A  +AG   +A +  + 
Sbjct: 500 LKFDECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLED 559

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV----DWLG 478
           +   G KPD    +S+I+A G+   +D A  LL E+ K G +  P +Y+ LV    DW  
Sbjct: 560 LKEQGGKPDIVSYSSLISALGQTGQIDTAFELLEEMSKRGLKLSPRSYSNLVRKLQDWGA 619

Query: 479 R 479
           R
Sbjct: 620 R 620


>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1151

 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 164/341 (48%), Gaps = 6/341 (1%)

Query: 230 DRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIV 289
           D L+    +L++KV + +L   +   +V  Y+ LI+A+ +   +E+ + +L  M E G +
Sbjct: 207 DLLKGNRVELFWKVYKGMLG--AIVPDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCI 264

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL 349
           P++VT +V++    +AG++D A E   S+ + G  PD  +Y ++I  +    +   G S+
Sbjct: 265 PNLVTYSVVIAGLCRAGDVDEALELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSM 324

Query: 350 VDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409
           +D M T G++     Y AL+  F +  D+ GA Q+   M   + +    +   L+    +
Sbjct: 325 LDEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCK 384

Query: 410 AGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPAT 469
            GD ++A   F  M  +G KPD +    +I  Y K   ++KA  LL+E++K+        
Sbjct: 385 IGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYM 444

Query: 470 YTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLE 529
              +V+ L     +  A +L  ++   G  P   I  ++     + G  ++A++ LG + 
Sbjct: 445 CGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVM- 503

Query: 530 AKKEQMGPDDF--ERIINGLLAGGFLQDAQRVHGLMEAQGF 568
            K + + PD F    +I G    G +++ +     M A+G 
Sbjct: 504 -KDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGL 543



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 125/278 (44%), Gaps = 1/278 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E+    N   YS +I  + K   L +A ++   M   G+ PD      L+    KAGN
Sbjct: 713 IPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGN 772

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            ++A   F  +   G       +N++I  +   G+      LV+ M+ + I  +   Y  
Sbjct: 773 TEKALSLFLGMVEEGI-ASTPAFNALIDGFFKLGKLIEAYQLVEDMVDNHITPNHVTYTI 831

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+      G+++ A Q+   M+     P + + T L+  Y + G   +  S FD M+  G
Sbjct: 832 LIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSLFDEMVARG 891

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            KPDD   + M+ A+ K+    KAL L+ ++  +G       YT+L+D L +   ++E  
Sbjct: 892 IKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEGVNVCKNLYTILIDALCKHNNLSEVL 951

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
           ++L ++ + G         +L   + RAG   +AL+ L
Sbjct: 952 KVLDEVEKQGSKLSLATCGTLVCCFHRAGRTDEALRVL 989



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 96/388 (24%), Positives = 162/388 (41%), Gaps = 12/388 (3%)

Query: 197 KILSLEKEEDPSPLLAEWKELLQPSRIDWINLL--DRLREQNTQLYFKVAELVL--SEES 252
           KI  LEK ED   L +E   +     I   N L     + QN +   K  EL++   +E+
Sbjct: 384 KIGDLEKAED---LFSEMTMMGIKPDIQTYNCLIEGYYKVQNME---KAYELLIEIKKEN 437

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
              N      +++       L  A  + ++M   G+ P+IV  T +V    K G  + A 
Sbjct: 438 LTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAI 497

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           +    ++  G  PD   YN++I+ +  AG+ + G S +  MI  G++ +   Y A +  +
Sbjct: 498 KILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGY 557

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + G+++ A +    M      P    CT L++ Y + G+  +A + F  M+  G  PD 
Sbjct: 558 CRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDV 617

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
           +  + +I    K   L +A+ +  EL   G  P   TYT L+  L +   +  A +L   
Sbjct: 618 QTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDD 677

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
           + + G  P      +L +   + G   KA +    +  K        +  II G      
Sbjct: 678 MCKKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSAN 737

Query: 553 LQDA-QRVHGLMEAQGFAASERLKVALI 579
           L +A Q  HG M+  G      +  ALI
Sbjct: 738 LTEAFQLFHG-MKLVGVPPDSFVYCALI 764



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 118/268 (44%), Gaps = 5/268 (1%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           +  + NV  Y   I  + +   ++ AER   +M ++GI P+ V  T L+  Y K GN  +
Sbjct: 541 KGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTK 600

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A   F  +   G  PD + ++ +I      G+ +  M +   ++  G+      Y +L+ 
Sbjct: 601 AFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLIS 660

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
           +  + GD++ A ++ + M  +   P + +   L+    + G+  +AR  FD +   G   
Sbjct: 661 NLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLAR 720

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL- 489
           +    +++IA Y K   L +A  L   ++  G  P    Y  L+D   +     +A  L 
Sbjct: 721 NSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLF 780

Query: 490 LGKISE-LGEAPPFKIQVSLCDMYARAG 516
           LG + E +   P F    +L D + + G
Sbjct: 781 LGMVEEGIASTPAFN---ALIDGFFKLG 805



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/314 (21%), Positives = 132/314 (42%), Gaps = 3/314 (0%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           V+ ++    +V  Y+ +I    K   +E+ +  L +M   G+ P++ T    +H Y +AG
Sbjct: 502 VMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAG 561

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            +  A+ +F  +   G  P+  +   +I  Y   G      +    M+  G+    + + 
Sbjct: 562 EMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHS 621

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+   ++ G ++ A  + + +  +   P + + T L+    + GD   A    D M + 
Sbjct: 622 VLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKK 681

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G  P+     ++I    K   + KA  L   + + G      TY+ ++    +   + EA
Sbjct: 682 GINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEA 741

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD-DFERIIN 545
            QL   +  +G  P   +  +L D   +AG  +KAL    FL   +E +     F  +I+
Sbjct: 742 FQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSL--FLGMVEEGIASTPAFNALID 799

Query: 546 GLLAGGFLQDAQRV 559
           G    G L +A ++
Sbjct: 800 GFFKLGKLIEAYQL 813



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 78/359 (21%), Positives = 140/359 (38%), Gaps = 39/359 (10%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTST----------------------- 296
           Y+ LID   ++    + + +L +M   G+ PD V  T                       
Sbjct: 305 YATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQVKEEMF 364

Query: 297 ------------VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPK 344
                        L+H   K G+L++A++ F  +   G +PD + YN +I  Y      +
Sbjct: 365 ARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNME 424

Query: 345 LGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
               L+  +    +  +  +  A++     CGD+  A ++   M     +P +   T +V
Sbjct: 425 KAYELLIEIKKENLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIV 484

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
           +   + G  ++A      M   G  PD  C  ++I  + K   +++  + L+E+   G +
Sbjct: 485 KGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLK 544

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQA 524
           P   TY   +    R   +  AE+   ++ + G AP   I   L D Y + G   KA   
Sbjct: 545 PNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAK 604

Query: 525 LGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
             F     + + PD      +I+GL   G LQ+A  V   +  +G         +LIS+
Sbjct: 605 --FRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISN 661



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/194 (21%), Positives = 98/194 (50%), Gaps = 8/194 (4%)

Query: 240 YFKVAELV--------LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPD 291
           +FK+ +L+        + +     N   Y+ LI+ H     +++AE++  +M +  ++P+
Sbjct: 801 FFKLGKLIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPN 860

Query: 292 IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVD 351
           ++T T L+H Y++ G        F+ + + G +PD   ++ M+ A++  G     + LVD
Sbjct: 861 VLTYTSLLHGYNRIGRRSEMFSLFDEMVARGIKPDDLAWSVMVDAHLKEGNWIKALKLVD 920

Query: 352 MMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAG 411
            M++ G+   + +Y  L+ +  +  ++    ++ + +  +  + +L +C  LV  + +AG
Sbjct: 921 DMLSEGVNVCKNLYTILIDALCKHNNLSEVLKVLDEVEKQGSKLSLATCGTLVCCFHRAG 980

Query: 412 DPDQARSNFDYMIR 425
             D+A    + M+R
Sbjct: 981 RTDEALRVLESMVR 994



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 83/407 (20%), Positives = 159/407 (39%), Gaps = 50/407 (12%)

Query: 206 DPSPLLAEWKELLQPSRI----DWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDY- 260
           D   L+ +  +++ P R+    +W+N   R         F +  L+L       N  +  
Sbjct: 73  DVVFLVIKQNQVIDPKRLHGFFNWVN--SRTVFSQNLSTFSILSLILCNSGLFGNAANVL 130

Query: 261 SKLIDA---HAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFES 317
            ++ID    H K   L+   +  K++N +     +V   +L+ +Y K G L+ A   F  
Sbjct: 131 ERMIDTRNPHVK--ILDSIIKCYKEINGSSSSSSVVVFEILIDIYRKKGFLNEAVSVFLG 188

Query: 318 LRSHGF----------------------------------QPDKKVYNSMIMAYVNAGQP 343
            +++ F                                   PD   Y ++I AY   G+ 
Sbjct: 189 AKTNEFIVGLACCNSLSKDLLKGNRVELFWKVYKGMLGAIVPDVYTYTNLINAYCRVGKV 248

Query: 344 KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403
           + G  ++  M   G   +   Y  ++    + GDV  A ++   M  +   P       L
Sbjct: 249 EEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVDEALELKRSMANKGLLPDNYIYATL 308

Query: 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGF 463
           ++ + +     + +S  D M  +G KPD     ++I  + K++ +  A  +  E+     
Sbjct: 309 IDGFCRQKRSTEGKSMLDEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQVKEEMFARKI 368

Query: 464 EPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
           +    TY  L+  L ++  + +AE L  +++ +G  P  +    L + Y +    +KA +
Sbjct: 369 KLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYE 428

Query: 524 ALGFLEAKKEQMGPDDF--ERIINGLLAGGFLQDAQRVHGLMEAQGF 568
            L  +E KKE +  + +    I+NGL   G L  A  +   M + G 
Sbjct: 429 LL--IEIKKENLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGL 473


>gi|225423724|ref|XP_002276864.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Vitis vinifera]
          Length = 587

 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 169/360 (46%), Gaps = 10/360 (2%)

Query: 194 ITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLD-----RLREQNTQLYFKVAELVL 248
           I  +IL   ++E+ S  +    + L P+   W ++++     RL +Q   +   +   +L
Sbjct: 101 IAQQILDFVQKEERSNRIWGSLDSLSPNHTTWDDIINVAVQLRLNKQWDAIVL-ICGWIL 159

Query: 249 SEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNL 308
              SF  +V  Y+ LIDA+ +++  + AE    ++ E   VP   T  +L+  Y  +G L
Sbjct: 160 YRSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGLL 219

Query: 309 DRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLAL 368
           ++A+  F  +R +GF P   VYN+ I   +  G  +  + + + M     + S   Y  L
Sbjct: 220 EKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTML 279

Query: 369 LRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH 428
           +  + +      A ++ + MR ++ +P + + T LV A+ + G  ++A   F+ +   G 
Sbjct: 280 INLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGL 339

Query: 429 KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQ 488
           +PD     +++ AY +      A  +   ++  G EP  A+Y ++VD  GR  L  +A+ 
Sbjct: 340 EPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQA 399

Query: 489 LLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLL 548
           +   +  LG  P  K  + L   Y+RAG   K  + +   +  K  + PD F  ++N +L
Sbjct: 400 VFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVN--QMHKSGIKPDTF--VLNSML 455



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 148/327 (45%), Gaps = 6/327 (1%)

Query: 201 LEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVR 258
           LEK E    + AE ++    PS + +   +D L +  +TQ   ++ E  +  +  Q +  
Sbjct: 219 LEKAE---AVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFER-MKRDRCQPSTA 274

Query: 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318
            Y+ LI+ + K +    A ++  +M      P+I T T LV+ +++ G  ++A+E FE L
Sbjct: 275 TYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQL 334

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
           +  G +PD   YN+++ AY  AG P     +  +M   G E     Y  ++ ++ + G  
Sbjct: 335 QEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLH 394

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             A  +  +M+     PT++S  LL+ AY +AG   +     + M + G KPD     SM
Sbjct: 395 EDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSM 454

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           +  YG+    +K   +L  +EK  +    +TY +L++  GR       E+L   +     
Sbjct: 455 LNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEELFRSLPARNL 514

Query: 499 APPFKIQVSLCDMYARAGIEKKALQAL 525
            P      S    Y+R     + L+  
Sbjct: 515 IPDVVTWTSRIGAYSRRKQYNRCLEVF 541



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 115/270 (42%), Gaps = 8/270 (2%)

Query: 318 LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
           L    F PD   YN +I AY      K   S    ++ +    +E+ Y  LL+++   G 
Sbjct: 159 LYRSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGL 218

Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
           +  A  +   MR   F P+       ++   + GD  +A   F+ M R   +P       
Sbjct: 219 LEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTM 278

Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           +I  YGK +    AL +  E+     +P   T+T LV+   R  L  +AE++  ++ E G
Sbjct: 279 LINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAG 338

Query: 498 EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG--PD--DFERIINGLLAGGFL 553
             P      +L + Y+RAG    A +    +    + MG  PD   +  +++     G  
Sbjct: 339 LEPDVYAYNALMEAYSRAGFPYGAAEIFSLM----QHMGCEPDRASYNIMVDAYGRAGLH 394

Query: 554 QDAQRVHGLMEAQGFAASERLKVALISSQT 583
           +DAQ V  +M+  G   + +  + L+S+ +
Sbjct: 395 EDAQAVFEVMKRLGITPTMKSHMLLLSAYS 424



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/318 (20%), Positives = 124/318 (38%), Gaps = 72/318 (22%)

Query: 215 KELLQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCL 273
           ++  QPS   +  L++   +   + +  KV   + S++  + N+  ++ L++A A+E   
Sbjct: 266 RDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKC-KPNICTFTALVNAFAREGLC 324

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           E AE I +++ E G+ PD+     L+  YS+AG    A E F  ++  G +PD+  YN M
Sbjct: 325 EKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIM 384

Query: 334 IMAYVNAG-----------QPKLGMS------------------------LVDMMITSGI 358
           + AY  AG             +LG++                        +V+ M  SGI
Sbjct: 385 VDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGI 444

Query: 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGD------ 412
           +    +  ++L  + + G      ++   M    +   + +  +L+  YG+AG       
Sbjct: 445 KPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEE 504

Query: 413 -----------PD------------------QARSNFDYMIRLGHKPDDRCTASMIAAYG 443
                      PD                  +    F+ MI  G  PD      +++A  
Sbjct: 505 LFRSLPARNLIPDVVTWTSRIGAYSRRKQYNRCLEVFEEMIDAGCYPDGGTAKVLLSACS 564

Query: 444 KKNLLDKALNLLLELEKD 461
             + + +   ++  + KD
Sbjct: 565 NGDQIQEVTTVIRTMHKD 582



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 78/183 (42%), Gaps = 4/183 (2%)

Query: 387 IMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKN 446
           I+    F P +    LL++AYGQ     +A S +  ++     P +   A ++ AY    
Sbjct: 158 ILYRSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSG 217

Query: 447 LLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQV 506
           LL+KA  +  E+ K GF P    Y   +D L +     +A ++  ++      P      
Sbjct: 218 LLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYT 277

Query: 507 SLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLME 564
            L ++Y +A     AL+   F E + ++  P+   F  ++N     G  + A+ +   ++
Sbjct: 278 MLINLYGKASKSYMALKV--FHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQ 335

Query: 565 AQG 567
             G
Sbjct: 336 EAG 338


>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
          Length = 1099

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 128/255 (50%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E     ++  Y+ LI    K N LE A R+L  MNENG+VPD  T +V +    K G ++
Sbjct: 432 ERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVE 491

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A   F+S+++ G + ++ +Y ++I  Y   G+  +  SL++ M+      +   Y  L+
Sbjct: 492 EAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLI 551

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               +   ++ A  +   M     +PT+ + T+L+    + G  D A   F++M+ LG++
Sbjct: 552 EGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQ 611

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     + + AY  + +L++  +++ ++ ++G  P   TYTVL+D   RL L + A   
Sbjct: 612 PDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDF 671

Query: 490 LGKISELGEAPPFKI 504
           L  + + G  P   I
Sbjct: 672 LKCMVDTGCKPSLYI 686



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 148/321 (46%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E+  + NV  Y+ LID   KEN +++A ++L +M+E G++P +VT   L+  Y K G 
Sbjct: 325 MKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGM 384

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D A E  + + S+   P+ + YN +I       +    M+L++ M+   +  S   Y +
Sbjct: 385 IDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNS 444

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    +  D+  A ++ ++M      P   + ++ ++   + G  ++A + FD +   G
Sbjct: 445 LIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKG 504

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            K ++    ++I  Y K   +D A +LL  +  D   P   TY VL++ L + + + EA 
Sbjct: 505 VKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEAS 564

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
            L+ K+  +G  P       L     + G    AL+    + +   Q     +   ++  
Sbjct: 565 SLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAY 624

Query: 548 LAGGFLQDAQRVHGLMEAQGF 568
            + G L++   V   M  +G 
Sbjct: 625 FSQGMLEEVDDVIAKMNEEGI 645



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 146/335 (43%), Gaps = 3/335 (0%)

Query: 193 LITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLD-RLREQNTQLYFKVAELVLSE 250
           ++ D +    K ++   +L+E  E  L PS + +  L+D   +E      F++ +L +  
Sbjct: 339 VLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDL-MES 397

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
            S   N R Y++LI    K+  +  A  +L KM E  + P ++T   L+H   K  +L+ 
Sbjct: 398 NSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLES 457

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A      +  +G  PD+  Y+  I      G+ +   +L D +   G++ +E IY AL+ 
Sbjct: 458 AYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALID 517

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
            + + G +  A  +   M  +   P   +  +L+E   +     +A S    M+ +G KP
Sbjct: 518 GYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKP 577

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
                  +I    K    D AL +   +   G++P   TYT  +       ++ E + ++
Sbjct: 578 TVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVI 637

Query: 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
            K++E G  P       L D YAR G+  +A   L
Sbjct: 638 AKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFL 672



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 85/361 (23%), Positives = 155/361 (42%), Gaps = 51/361 (14%)

Query: 224 DWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKM 283
           D + +L+  R+ N    FK          F+  +R Y+ ++ + +K   +++ + +  ++
Sbjct: 136 DVLFVLEVFRKMNADGEFK----------FKPTLRCYNTILMSLSKFLLIDEMKTVYLEL 185

Query: 284 NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343
             N I P+I T   +V+ Y K GN+  A+     +   G  PD   Y S+I+ +      
Sbjct: 186 LNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGV 245

Query: 344 KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403
                +  +M   G +R+E  Y  L+    + G +  A ++   M  +   PT+ + T+L
Sbjct: 246 DNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVL 305

Query: 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGF 463
           + A                                ++  G+K    +ALNL  E+++ G 
Sbjct: 306 IYA--------------------------------LSGSGRK---VEALNLFNEMKEKGC 330

Query: 464 EPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
           EP   TYTVL+D L +   ++EA ++L ++SE G  P      +L D Y + G+   A +
Sbjct: 331 EPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFE 390

Query: 524 ALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQT 583
            L  +E+     GP+   R  N L+ G  L   ++VH  M         +L  +LI+  +
Sbjct: 391 ILDLMESN--SCGPN--TRTYNELICG--LCKKRKVHKAMALLNKMLERKLSPSLITYNS 444

Query: 584 F 584
            
Sbjct: 445 L 445



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/341 (22%), Positives = 147/341 (43%), Gaps = 4/341 (1%)

Query: 241 FKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
            K   L L       N+  ++ +++ + K   + +AE    K+ + G+ PD  T T L+ 
Sbjct: 178 MKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLIL 237

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
            + +   +D A E F  +   G Q ++  Y ++I     AG+    + L   M       
Sbjct: 238 GHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCP 297

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
           +   Y  L+ + +  G    A  + N M+ +  +P + + T+L++   +    D+AR   
Sbjct: 298 TVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKML 357

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
             M   G  P      ++I  Y K+ ++D A  +L  +E +   P   TY  L+  L + 
Sbjct: 358 SEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKK 417

Query: 481 QLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD-- 538
           + +++A  LL K+ E   +P      SL     +    + A + L  +   +  + PD  
Sbjct: 418 RKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLM--NENGLVPDQW 475

Query: 539 DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
            +   I+ L   G +++A  +   ++A+G  A+E +  ALI
Sbjct: 476 TYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALI 516



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 97/237 (40%), Gaps = 29/237 (12%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK--- 304
           ++EE    ++  Y+ LID +A+      A   LK M + G  P +   ++L+   S    
Sbjct: 640 MNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENR 699

Query: 305 ------------AGNLDR--------------AKEAFESLRSHGFQPDKKVYNSMIMAYV 338
                         N++               A + FE +  HG   D  +Y ++I  + 
Sbjct: 700 MKETRSEIGIDSVSNVNSVDIADVWKTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFC 759

Query: 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398
              + +    LV  M   G+  SE+IY +LL    + G    A ++ + M      P LE
Sbjct: 760 QQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLE 819

Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
           S  LLV      G  ++A++ F  ++  G+  D+     +I    K++L+D+   L+
Sbjct: 820 SYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLLKRDLVDECSELI 876



 Score = 41.2 bits (95), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 53/122 (43%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+D   K     +A R++  M ENG++P + +  +LV      G+ ++AK  F  L 
Sbjct: 786 YNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLL 845

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           S G+  D+  +  +I   +          L+D+M         +I  A L   A     +
Sbjct: 846 SCGYNYDEVAWKVLIDGLLKRDLVDECSELIDIMEEKDATAQADIACAALMRLAAANSTK 905

Query: 380 GA 381
           GA
Sbjct: 906 GA 907


>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/287 (29%), Positives = 139/287 (48%), Gaps = 8/287 (2%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+  ++   K+    DA+ +  +M E G+VPD  T T L+  Y K GN+D+A   F
Sbjct: 466 DVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLF 525

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E++     +PDK  YN++I  +  AG+      L D MI   I      Y  +L  F   
Sbjct: 526 EAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSS 585

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A  + + M  +  +P L +C  L++ Y ++GD  +A      MI  G  PD    
Sbjct: 586 GLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSY 645

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL---GRLQLINEAEQLLGK 492
            ++I  Y K+  L+KA  L+ E+EK G +    TY ++++     G++Q   EAEQ+L K
Sbjct: 646 NTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQ---EAEQVLRK 702

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD 539
           + E+G  P      SL + +      K+A +     E  +  + PDD
Sbjct: 703 MIEIGINPDGATYSSLINGHVSQDNMKEAFRFHD--EMLQRGLVPDD 747



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 136/304 (44%), Gaps = 8/304 (2%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           +S LI   A+   L  A    ++M  +GIVPD V  T+L+  + + G L  A +  + + 
Sbjct: 400 FSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEML 459

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE----EIYLALLRSFAQC 375
           + G   D   YN+    ++N    K   +  DM+    +ER        +  L+R + + 
Sbjct: 460 ARGCFMDVVTYNT----FLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKD 515

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G++  A  +   M     +P   +   L++ + +AG+  +A+  +D MIR    PD    
Sbjct: 516 GNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISY 575

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            +++  +    LL +ALNL  ++ + G  P   T   L+    R   + +A + L K+  
Sbjct: 576 GTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMIS 635

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
            G  P      +L D Y +    +KA   +  +E +  Q     +  I+NG  A G +Q+
Sbjct: 636 NGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQE 695

Query: 556 AQRV 559
           A++V
Sbjct: 696 AEQV 699



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 126/300 (42%), Gaps = 4/300 (1%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           + NV   + +++A  K+   E+    L  M   G+  DIVT   L++ Y + G ++ A +
Sbjct: 254 ELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQ 313

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
              S  S G +P    YN+++      G+      ++  M+  G+  +   Y  LL    
Sbjct: 314 LLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEIC 373

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           +  ++  A +I + M      P L S + L+    + G   QA  +F  M R G  PD+ 
Sbjct: 374 RRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNV 433

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
               +I  + +   L  AL +  E+   G      TY   ++ L + ++  +A+ L  ++
Sbjct: 434 IYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEM 493

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGG 551
            E G  P F    +L   Y + G   KAL    F    +  + PD   +  +I+G    G
Sbjct: 494 VERGMVPDFYTFTTLIRGYCKDGNMDKALNL--FEAMVRTNLKPDKVTYNTLIDGFCKAG 551



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 135/314 (42%), Gaps = 4/314 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N   Y+ L+    + + + +A+ I  +M+  G++PD+V+ + L+ + ++ G+L +A   F
Sbjct: 361 NAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHF 420

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G  PD  +Y  +I  +   G     + + D M+  G       Y   L    + 
Sbjct: 421 REMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKK 480

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
                A  + N M      P   + T L+  Y + G+ D+A + F+ M+R   KPD    
Sbjct: 481 KMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTY 540

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I  + K   + +A  L  ++ +    P   +Y  +++      L+ EA  L  ++ E
Sbjct: 541 NTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLE 600

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF--ERIINGLLAGGFL 553
            G  P      +L   Y R+G   KA + L   +     + PD F    +I+G L    L
Sbjct: 601 KGIRPNLVTCNTLIKGYCRSGDMPKAYEYLS--KMISNGIIPDSFSYNTLIDGYLKEANL 658

Query: 554 QDAQRVHGLMEAQG 567
           + A  +   ME +G
Sbjct: 659 EKAFILINEMEKRG 672



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 99/224 (44%), Gaps = 16/224 (7%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVR--------DYSKLIDAHAK 269
           L+P ++ +  L+D         + K  E+  ++E +   +R         Y  +++    
Sbjct: 533 LKPDKVTYNTLIDG--------FCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCS 584

Query: 270 ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKV 329
              L +A  +  +M E GI P++VT   L+  Y ++G++ +A E    + S+G  PD   
Sbjct: 585 SGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFS 644

Query: 330 YNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389
           YN++I  Y+     +    L++ M   G++ +   Y  +L  F   G ++ A Q+   M 
Sbjct: 645 YNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMI 704

Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
                P   + + L+  +    +  +A    D M++ G  PDDR
Sbjct: 705 EIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVPDDR 748



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/224 (21%), Positives = 95/224 (42%), Gaps = 4/224 (1%)

Query: 246 LVLSEESFQTNVR----DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM 301
           L L E   +TN++     Y+ LID   K   +  A+ +   M    I+PD ++   +++ 
Sbjct: 522 LNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNG 581

Query: 302 YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS 361
           +  +G L  A    + +   G +P+    N++I  Y  +G        +  MI++GI   
Sbjct: 582 FCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPD 641

Query: 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421
              Y  L+  + +  ++  A  + N M     Q  + +  L++  +   G   +A     
Sbjct: 642 SFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLR 701

Query: 422 YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
            MI +G  PD    +S+I  +  ++ + +A     E+ + G  P
Sbjct: 702 KMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVP 745



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 59/308 (19%), Positives = 120/308 (38%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  L+  + +   L +     + +   G+   I     L+    + G +D A E +  + 
Sbjct: 190 YDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVV 249

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G + +    N M+ A     + +  M  +  M   G+      Y  L+ ++ + G V 
Sbjct: 250 RGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVE 309

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A Q+ N       +P L +   ++    + G  D+A+     M++LG  P+     +++
Sbjct: 310 EAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLL 369

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
               +++ + +A  +  E+ + G  P   +++ L+  L R   + +A     ++   G  
Sbjct: 370 VEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIV 429

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P   I   L D + R G    AL+    + A+   M    +   +NGL       DA  +
Sbjct: 430 PDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADML 489

Query: 560 HGLMEAQG 567
              M  +G
Sbjct: 490 FNEMVERG 497



 Score = 43.9 bits (102), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 66/158 (41%), Gaps = 6/158 (3%)

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
           IY  L+R++ Q   +R   +   I+R +    ++ +C  L+    + G  D A   +  +
Sbjct: 189 IYDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEV 248

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483
           +R G + +      M+ A  K    +  +  L ++E  G      TY  L++   R  L+
Sbjct: 249 VRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLV 308

Query: 484 NEAEQLLGKISELGEAPPF----KIQVSLCDM--YARA 515
            EA QLL   S  G  P       I   LC +  Y RA
Sbjct: 309 EEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRA 346


>gi|297737955|emb|CBI27156.3| unnamed protein product [Vitis vinifera]
          Length = 625

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 169/360 (46%), Gaps = 10/360 (2%)

Query: 194 ITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLD-----RLREQNTQLYFKVAELVL 248
           I  +IL   ++E+ S  +    + L P+   W ++++     RL +Q   +   +   +L
Sbjct: 139 IAQQILDFVQKEERSNRIWGSLDSLSPNHTTWDDIINVAVQLRLNKQWDAIVL-ICGWIL 197

Query: 249 SEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNL 308
              SF  +V  Y+ LIDA+ +++  + AE    ++ E   VP   T  +L+  Y  +G L
Sbjct: 198 YRSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGLL 257

Query: 309 DRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLAL 368
           ++A+  F  +R +GF P   VYN+ I   +  G  +  + + + M     + S   Y  L
Sbjct: 258 EKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTML 317

Query: 369 LRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH 428
           +  + +      A ++ + MR ++ +P + + T LV A+ + G  ++A   F+ +   G 
Sbjct: 318 INLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGL 377

Query: 429 KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQ 488
           +PD     +++ AY +      A  +   ++  G EP  A+Y ++VD  GR  L  +A+ 
Sbjct: 378 EPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQA 437

Query: 489 LLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLL 548
           +   +  LG  P  K  + L   Y+RAG   K  + +   +  K  + PD F  ++N +L
Sbjct: 438 VFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVN--QMHKSGIKPDTF--VLNSML 493



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 148/327 (45%), Gaps = 6/327 (1%)

Query: 201 LEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVR 258
           LEK E    + AE ++    PS + +   +D L +  +TQ   ++ E  +  +  Q +  
Sbjct: 257 LEKAE---AVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFER-MKRDRCQPSTA 312

Query: 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318
            Y+ LI+ + K +    A ++  +M      P+I T T LV+ +++ G  ++A+E FE L
Sbjct: 313 TYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQL 372

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
           +  G +PD   YN+++ AY  AG P     +  +M   G E     Y  ++ ++ + G  
Sbjct: 373 QEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLH 432

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             A  +  +M+     PT++S  LL+ AY +AG   +     + M + G KPD     SM
Sbjct: 433 EDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSM 492

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           +  YG+    +K   +L  +EK  +    +TY +L++  GR       E+L   +     
Sbjct: 493 LNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEELFRSLPARNL 552

Query: 499 APPFKIQVSLCDMYARAGIEKKALQAL 525
            P      S    Y+R     + L+  
Sbjct: 553 IPDVVTWTSRIGAYSRRKQYNRCLEVF 579



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 115/270 (42%), Gaps = 8/270 (2%)

Query: 318 LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
           L    F PD   YN +I AY      K   S    ++ +    +E+ Y  LL+++   G 
Sbjct: 197 LYRSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGL 256

Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
           +  A  +   MR   F P+       ++   + GD  +A   F+ M R   +P       
Sbjct: 257 LEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTM 316

Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           +I  YGK +    AL +  E+     +P   T+T LV+   R  L  +AE++  ++ E G
Sbjct: 317 LINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAG 376

Query: 498 EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG--PD--DFERIINGLLAGGFL 553
             P      +L + Y+RAG    A +    +    + MG  PD   +  +++     G  
Sbjct: 377 LEPDVYAYNALMEAYSRAGFPYGAAEIFSLM----QHMGCEPDRASYNIMVDAYGRAGLH 432

Query: 554 QDAQRVHGLMEAQGFAASERLKVALISSQT 583
           +DAQ V  +M+  G   + +  + L+S+ +
Sbjct: 433 EDAQAVFEVMKRLGITPTMKSHMLLLSAYS 462



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 64/318 (20%), Positives = 124/318 (38%), Gaps = 72/318 (22%)

Query: 215 KELLQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCL 273
           ++  QPS   +  L++   +   + +  KV   + S++  + N+  ++ L++A A+E   
Sbjct: 304 RDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKC-KPNICTFTALVNAFAREGLC 362

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           E AE I +++ E G+ PD+     L+  YS+AG    A E F  ++  G +PD+  YN M
Sbjct: 363 EKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIM 422

Query: 334 IMAYVNAG-----------QPKLGMS------------------------LVDMMITSGI 358
           + AY  AG             +LG++                        +V+ M  SGI
Sbjct: 423 VDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGI 482

Query: 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAG------- 411
           +    +  ++L  + + G      ++   M    +   + +  +L+  YG+AG       
Sbjct: 483 KPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEE 542

Query: 412 ----------DPD------------------QARSNFDYMIRLGHKPDDRCTASMIAAYG 443
                      PD                  +    F+ MI  G  PD      +++A  
Sbjct: 543 LFRSLPARNLIPDVVTWTSRIGAYSRRKQYNRCLEVFEEMIDAGCYPDGGTAKVLLSACS 602

Query: 444 KKNLLDKALNLLLELEKD 461
             + + +   ++  + KD
Sbjct: 603 NGDQIQEVTTVIRTMHKD 620



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 78/184 (42%), Gaps = 4/184 (2%)

Query: 387 IMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKN 446
           I+    F P +    LL++AYGQ     +A S +  ++     P +   A ++ AY    
Sbjct: 196 ILYRSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSG 255

Query: 447 LLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQV 506
           LL+KA  +  E+ K GF P    Y   +D L +     +A ++  ++      P      
Sbjct: 256 LLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYT 315

Query: 507 SLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLME 564
            L ++Y +A     AL+   F E + ++  P+   F  ++N     G  + A+ +   ++
Sbjct: 316 MLINLYGKASKSYMALKV--FHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQ 373

Query: 565 AQGF 568
             G 
Sbjct: 374 EAGL 377


>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/287 (29%), Positives = 139/287 (48%), Gaps = 8/287 (2%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+  ++   K+    DA+ +  +M E G+VPD  T T L+  Y K GN+D+A   F
Sbjct: 466 DVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLF 525

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E++     +PDK  YN++I  +  AG+      L D MI   I      Y  +L  F   
Sbjct: 526 EAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSS 585

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A  + + M  +  +P L +C  L++ Y ++GD  +A      MI  G  PD    
Sbjct: 586 GLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSY 645

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL---GRLQLINEAEQLLGK 492
            ++I  Y K+  L+KA  L+ E+EK G +    TY ++++     G++Q   EAEQ+L K
Sbjct: 646 NTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQ---EAEQVLRK 702

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD 539
           + E+G  P      SL + +      K+A +     E  +  + PDD
Sbjct: 703 MIEIGINPDGATYSSLINGHVSQDNMKEAFRFHD--EMLQRGLVPDD 747



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 136/304 (44%), Gaps = 8/304 (2%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           +S LI   A+   L  A    ++M  +GIVPD V  T+L+  + + G L  A +  + + 
Sbjct: 400 FSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEML 459

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE----EIYLALLRSFAQC 375
           + G   D   YN+    ++N    K   +  DM+    +ER        +  L+R + + 
Sbjct: 460 ARGCFMDVVTYNT----FLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKD 515

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G++  A  +   M     +P   +   L++ + +AG+  +A+  +D MIR    PD    
Sbjct: 516 GNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISY 575

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            +++  +    LL +ALNL  ++ + G  P   T   L+    R   + +A + L K+  
Sbjct: 576 GTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMIS 635

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
            G  P      +L D Y +    +KA   +  +E +  Q     +  I+NG  A G +Q+
Sbjct: 636 NGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQE 695

Query: 556 AQRV 559
           A++V
Sbjct: 696 AEQV 699



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 126/300 (42%), Gaps = 4/300 (1%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           + NV   + +++A  K+   E+    L  M   G+  DIVT   L++ Y + G ++ A +
Sbjct: 254 ELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQ 313

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
              S  S G +P    YN+++      G+      ++  M+  G+  +   Y  LL    
Sbjct: 314 LLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEIC 373

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           +  ++  A +I + M      P L S + L+    + G   QA  +F  M R G  PD+ 
Sbjct: 374 RRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNV 433

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
               +I  + +   L  AL +  E+   G      TY   ++ L + ++  +A+ L  ++
Sbjct: 434 IYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEM 493

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGG 551
            E G  P F    +L   Y + G   KAL    F    +  + PD   +  +I+G    G
Sbjct: 494 VERGMVPDFYTFTTLIRGYCKDGNMDKALNL--FEAMVRTNLKPDKVTYNTLIDGFCKAG 551



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 135/314 (42%), Gaps = 4/314 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N   Y+ L+    + + + +A+ I  +M+  G++PD+V+ + L+ + ++ G+L +A   F
Sbjct: 361 NAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHF 420

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G  PD  +Y  +I  +   G     + + D M+  G       Y   L    + 
Sbjct: 421 REMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKK 480

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
                A  + N M      P   + T L+  Y + G+ D+A + F+ M+R   KPD    
Sbjct: 481 KMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTY 540

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I  + K   + +A  L  ++ +    P   +Y  +++      L+ EA  L  ++ E
Sbjct: 541 NTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLE 600

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF--ERIINGLLAGGFL 553
            G  P      +L   Y R+G   KA + L   +     + PD F    +I+G L    L
Sbjct: 601 KGIRPNLVTCNTLIKGYCRSGDMPKAYEYLS--KMISNGIIPDSFSYNTLIDGYLKEANL 658

Query: 554 QDAQRVHGLMEAQG 567
           + A  +   ME +G
Sbjct: 659 EKAFILINEMEKRG 672



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 99/224 (44%), Gaps = 16/224 (7%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVR--------DYSKLIDAHAK 269
           L+P ++ +  L+D         + K  E+  ++E +   +R         Y  +++    
Sbjct: 533 LKPDKVTYNTLIDG--------FCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCS 584

Query: 270 ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKV 329
              L +A  +  +M E GI P++VT   L+  Y ++G++ +A E    + S+G  PD   
Sbjct: 585 SGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFS 644

Query: 330 YNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389
           YN++I  Y+     +    L++ M   G++ +   Y  +L  F   G ++ A Q+   M 
Sbjct: 645 YNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMI 704

Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
                P   + + L+  +    +  +A    D M++ G  PDDR
Sbjct: 705 EIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVPDDR 748



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/224 (21%), Positives = 95/224 (42%), Gaps = 4/224 (1%)

Query: 246 LVLSEESFQTNVR----DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM 301
           L L E   +TN++     Y+ LID   K   +  A+ +   M    I+PD ++   +++ 
Sbjct: 522 LNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNG 581

Query: 302 YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS 361
           +  +G L  A    + +   G +P+    N++I  Y  +G        +  MI++GI   
Sbjct: 582 FCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPD 641

Query: 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421
              Y  L+  + +  ++  A  + N M     Q  + +  L++  +   G   +A     
Sbjct: 642 SFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLR 701

Query: 422 YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
            MI +G  PD    +S+I  +  ++ + +A     E+ + G  P
Sbjct: 702 KMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVP 745



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 59/308 (19%), Positives = 120/308 (38%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  L+  + +   L +     + +   G+   I     L+    + G +D A E +  + 
Sbjct: 190 YDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVV 249

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G + +    N M+ A     + +  M  +  M   G+      Y  L+ ++ + G V 
Sbjct: 250 RGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVE 309

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A Q+ N       +P L +   ++    + G  D+A+     M++LG  P+     +++
Sbjct: 310 EAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLL 369

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
               +++ + +A  +  E+ + G  P   +++ L+  L R   + +A     ++   G  
Sbjct: 370 VEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIV 429

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P   I   L D + R G    AL+    + A+   M    +   +NGL       DA  +
Sbjct: 430 PDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADML 489

Query: 560 HGLMEAQG 567
              M  +G
Sbjct: 490 FNEMVERG 497



 Score = 43.9 bits (102), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 66/158 (41%), Gaps = 6/158 (3%)

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
           IY  L+R++ Q   +R   +   I+R +    ++ +C  L+    + G  D A   +  +
Sbjct: 189 IYDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEV 248

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483
           +R G + +      M+ A  K    +  +  L ++E  G      TY  L++   R  L+
Sbjct: 249 VRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLV 308

Query: 484 NEAEQLLGKISELGEAPPF----KIQVSLCDM--YARA 515
            EA QLL   S  G  P       I   LC +  Y RA
Sbjct: 309 EEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRA 346


>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
           [Vitis vinifera]
 gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
          Length = 890

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 128/255 (50%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E     ++  Y+ LI    K N LE A R+L  MNENG+VPD  T +V +    K G ++
Sbjct: 432 ERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVE 491

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A   F+S+++ G + ++ +Y ++I  Y   G+  +  SL++ M+      +   Y  L+
Sbjct: 492 EAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLI 551

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               +   ++ A  +   M     +PT+ + T+L+    + G  D A   F++M+ LG++
Sbjct: 552 EGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQ 611

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     + + AY  + +L++  +++ ++ ++G  P   TYTVL+D   RL L + A   
Sbjct: 612 PDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDF 671

Query: 490 LGKISELGEAPPFKI 504
           L  + + G  P   I
Sbjct: 672 LKCMVDTGCKPSLYI 686



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 148/321 (46%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E+  + NV  Y+ LID   KEN +++A ++L +M+E G++P +VT   L+  Y K G 
Sbjct: 325 MKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGM 384

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D A E  + + S+   P+ + YN +I       +    M+L++ M+   +  S   Y +
Sbjct: 385 IDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNS 444

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    +  D+  A ++ ++M      P   + ++ ++   + G  ++A + FD +   G
Sbjct: 445 LIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKG 504

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            K ++    ++I  Y K   +D A +LL  +  D   P   TY VL++ L + + + EA 
Sbjct: 505 VKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEAS 564

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
            L+ K+  +G  P       L     + G    AL+    + +   Q     +   ++  
Sbjct: 565 SLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAY 624

Query: 548 LAGGFLQDAQRVHGLMEAQGF 568
            + G L++   V   M  +G 
Sbjct: 625 FSQGMLEEVDDVIAKMNEEGI 645



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 146/335 (43%), Gaps = 3/335 (0%)

Query: 193 LITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLD-RLREQNTQLYFKVAELVLSE 250
           ++ D +    K ++   +L+E  E  L PS + +  L+D   +E      F++ +L +  
Sbjct: 339 VLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDL-MES 397

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
            S   N R Y++LI    K+  +  A  +L KM E  + P ++T   L+H   K  +L+ 
Sbjct: 398 NSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLES 457

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A      +  +G  PD+  Y+  I      G+ +   +L D +   G++ +E IY AL+ 
Sbjct: 458 AYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALID 517

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
            + + G +  A  +   M  +   P   +  +L+E   +     +A S    M+ +G KP
Sbjct: 518 GYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKP 577

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
                  +I    K    D AL +   +   G++P   TYT  +       ++ E + ++
Sbjct: 578 TVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVI 637

Query: 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
            K++E G  P       L D YAR G+  +A   L
Sbjct: 638 AKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFL 672



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 84/361 (23%), Positives = 152/361 (42%), Gaps = 51/361 (14%)

Query: 224 DWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKM 283
           D + +L+  R+ N    FK          F+  +R Y+ ++ + +K   +++ + +  ++
Sbjct: 136 DVLFVLEVFRKMNADGEFK----------FKPTLRCYNTILMSLSKFLLIDEMKTVYLEL 185

Query: 284 NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343
             N I P+I T   +V+ Y K GN+  A+     +   G  PD   Y S+I+ +      
Sbjct: 186 LNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGV 245

Query: 344 KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403
                +  +M   G +R+E  Y  L+    + G +  A ++   M  +   PT+ + T+L
Sbjct: 246 DNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVL 305

Query: 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGF 463
           + A   +G   +A                                   LNL  E+++ G 
Sbjct: 306 IYALSGSGRKVEA-----------------------------------LNLFNEMKEKGC 330

Query: 464 EPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
           EP   TYTVL+D L +   ++EA ++L ++SE G  P      +L D Y + G+   A +
Sbjct: 331 EPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFE 390

Query: 524 ALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQT 583
            L  +E+     GP+   R  N L+ G  L   ++VH  M         +L  +LI+  +
Sbjct: 391 ILDLMESN--SCGPN--TRTYNELICG--LCKKRKVHKAMALLNKMLERKLSPSLITYNS 444

Query: 584 F 584
            
Sbjct: 445 L 445



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 123/280 (43%), Gaps = 53/280 (18%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG------ 306
           +Q +V  Y+  + A+  +  LE+ + ++ KMNE GI+PD+VT TVL+  Y++ G      
Sbjct: 610 YQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAF 669

Query: 307 -----------------------NL---DRAKEA---------------------FESLR 319
                                  NL   +R KE                      FE + 
Sbjct: 670 DFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNTLEYEIALKLFEKMV 729

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
            HG   D  +Y ++I  +    + +    LV  M   G+  SE+IY +LL    + G   
Sbjct: 730 EHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYA 789

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++ + M      P LES  LLV      G  ++A++ F  ++  G+  D+     +I
Sbjct: 790 EAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLI 849

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
               K++L+D+   L+  +E+ G +P P TY++L++ L R
Sbjct: 850 DGLLKRDLVDECSELIDIMEEKGCQPNPLTYSLLIEGLER 889



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/340 (22%), Positives = 147/340 (43%), Gaps = 4/340 (1%)

Query: 242 KVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM 301
           K   L L       N+  ++ +++ + K   + +AE    K+ + G+ PD  T T L+  
Sbjct: 179 KTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILG 238

Query: 302 YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS 361
           + +   +D A E F  +   G Q ++  Y ++I     AG+    + L   M       +
Sbjct: 239 HCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPT 298

Query: 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421
              Y  L+ + +  G    A  + N M+ +  +P + + T+L++   +    D+AR    
Sbjct: 299 VRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLS 358

Query: 422 YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ 481
            M   G  P      ++I  Y K+ ++D A  +L  +E +   P   TY  L+  L + +
Sbjct: 359 EMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKR 418

Query: 482 LINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--D 539
            +++A  LL K+ E   +P      SL     +    + A + L  +   +  + PD   
Sbjct: 419 KVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLM--NENGLVPDQWT 476

Query: 540 FERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
           +   I+ L   G +++A  +   ++A+G  A+E +  ALI
Sbjct: 477 YSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALI 516


>gi|449455399|ref|XP_004145440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Cucumis sativus]
          Length = 576

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 147/306 (48%), Gaps = 4/306 (1%)

Query: 243 VAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMY 302
           + E ++++ +F+ +V  Y+ L+DA+ + +  +D E    ++ E+  +P   T  +L+  Y
Sbjct: 141 ICEWIMNKSTFRPDVIVYNLLMDAYGQRSLYKDVESTYLELLESHCIPTEDTYALLLKAY 200

Query: 303 SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE 362
            K+G L++A+  F  +R +G  P   VYN+ I   V  G     + +   M   G + + 
Sbjct: 201 CKSGLLEKAEAVFAEMRKYGLSPSAIVYNAYIDGLVKGGNNVKAVEIFHRMKRDGCQPTT 260

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
           + Y  L+  + +      A  I + MR +  +P + + T LV A  + G  ++A   F+ 
Sbjct: 261 DTYTMLINVYGKESKSHMAQNIFDEMRTQRCKPNICTFTALVNALAREGLCEKAEEIFEQ 320

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
           M   G++PD     +++ +Y +      A  +   ++  G EP  A+Y ++VD  GR  L
Sbjct: 321 MQEAGYEPDVYAYNALMESYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGL 380

Query: 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFER 542
             +A+ +  ++  +G  P  K  + L   Y+ AG   K    +G  +  K  + PD F  
Sbjct: 381 HEDAQAVFEEMKRIGITPTMKSHMLLLSAYSSAGNVAKCEDIIG--QMHKSGLKPDTF-- 436

Query: 543 IINGLL 548
           ++N +L
Sbjct: 437 VMNSML 442



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/373 (23%), Positives = 162/373 (43%), Gaps = 3/373 (0%)

Query: 199 LSLEKEEDPSPLLAEW---KELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQT 255
           L L K+  P  L+ EW   K   +P  I +  L+D   +++     +   L L E     
Sbjct: 129 LRLNKKWGPIILICEWIMNKSTFRPDVIVYNLLMDAYGQRSLYKDVESTYLELLESHCIP 188

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
               Y+ L+ A+ K   LE AE +  +M + G+ P  +     +    K GN  +A E F
Sbjct: 189 TEDTYALLLKAYCKSGLLEKAEAVFAEMRKYGLSPSAIVYNAYIDGLVKGGNNVKAVEIF 248

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             ++  G QP    Y  +I  Y    +  +  ++ D M T   + +   + AL+ + A+ 
Sbjct: 249 HRMKRDGCQPTTDTYTMLINVYGKESKSHMAQNIFDEMRTQRCKPNICTFTALVNALARE 308

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G    A +I   M+   ++P + +   L+E+Y +AG P  A   F  M  +G +PD    
Sbjct: 309 GLCEKAEEIFEQMQEAGYEPDVYAYNALMESYSRAGFPYGAAEIFSLMQHMGCEPDRASY 368

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             M+ AYG+  L + A  +  E+++ G  P   ++ +L+        + + E ++G++ +
Sbjct: 369 NIMVDAYGRAGLHEDAQAVFEEMKRIGITPTMKSHMLLLSAYSSAGNVAKCEDIIGQMHK 428

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
            G  P   +  S+ ++Y R G   K       ++    +     +  +IN     GF++ 
Sbjct: 429 SGLKPDTFVMNSMLNLYGRLGQFGKMEDLFSTMQKGPCRADISTYNILINVYGRAGFVER 488

Query: 556 AQRVHGLMEAQGF 568
            + +  L+ A+  
Sbjct: 489 MEELFQLLPAKNL 501



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 146/326 (44%), Gaps = 8/326 (2%)

Query: 201 LEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKVAELV--LSEESFQTNV 257
           LEK E    + AE ++  L PS I +   +D L +    +  K  E+   +  +  Q   
Sbjct: 206 LEKAE---AVFAEMRKYGLSPSAIVYNAYIDGLVKGGNNV--KAVEIFHRMKRDGCQPTT 260

Query: 258 RDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFES 317
             Y+ LI+ + KE+    A+ I  +M      P+I T T LV+  ++ G  ++A+E FE 
Sbjct: 261 DTYTMLINVYGKESKSHMAQNIFDEMRTQRCKPNICTFTALVNALAREGLCEKAEEIFEQ 320

Query: 318 LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
           ++  G++PD   YN+++ +Y  AG P     +  +M   G E     Y  ++ ++ + G 
Sbjct: 321 MQEAGYEPDVYAYNALMESYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGL 380

Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
              A  +   M+     PT++S  LL+ AY  AG+  +       M + G KPD     S
Sbjct: 381 HEDAQAVFEEMKRIGITPTMKSHMLLLSAYSSAGNVAKCEDIIGQMHKSGLKPDTFVMNS 440

Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           M+  YG+     K  +L   ++K       +TY +L++  GR   +   E+L   +    
Sbjct: 441 MLNLYGRLGQFGKMEDLFSTMQKGPCRADISTYNILINVYGRAGFVERMEELFQLLPAKN 500

Query: 498 EAPPFKIQVSLCDMYARAGIEKKALQ 523
             P      S    Y+R  + K+ L+
Sbjct: 501 LEPDVVTWTSRIGAYSRKKLYKRCLE 526



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 114/257 (44%), Gaps = 3/257 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  ++ L++A A+E   E AE I ++M E G  PD+     L+  YS+AG    A E F
Sbjct: 294 NICTFTALVNALAREGLCEKAEEIFEQMQEAGYEPDVYAYNALMESYSRAGFPYGAAEIF 353

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             ++  G +PD+  YN M+ AY  AG  +   ++ + M   GI  + + ++ LL +++  
Sbjct: 354 SLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEEMKRIGITPTMKSHMLLLSAYSSA 413

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G+V     I   M     +P       ++  YG+ G   +    F  M +   + D    
Sbjct: 414 GNVAKCEDIIGQMHKSGLKPDTFVMNSMLNLYGRLGQFGKMEDLFSTMQKGPCRADISTY 473

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +I  YG+   +++   L   L     EP   T+T  +    R +L     +L  K+ +
Sbjct: 474 NILINVYGRAGFVERMEELFQLLPAKNLEPDVVTWTSRIGAYSRKKLYKRCLELFEKMID 533

Query: 496 LGEAP---PFKIQVSLC 509
            G  P     K+ +S C
Sbjct: 534 AGCYPDGGTAKVLLSAC 550



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 130/302 (43%), Gaps = 10/302 (3%)

Query: 286 NGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKL 345
           N    DI++  V + +  K G +    E    +    F+PD  VYN ++ AY      K 
Sbjct: 116 NSTWDDIISVAVQLRLNKKWGPIILICEWI--MNKSTFRPDVIVYNLLMDAYGQRSLYKD 173

Query: 346 GMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVE 405
             S    ++ S    +E+ Y  LL+++ + G +  A  +   MR     P+       ++
Sbjct: 174 VESTYLELLESHCIPTEDTYALLLKAYCKSGLLEKAEAVFAEMRKYGLSPSAIVYNAYID 233

Query: 406 AYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
              + G+  +A   F  M R G +P       +I  YGK++    A N+  E+     +P
Sbjct: 234 GLVKGGNNVKAVEIFHRMKRDGCQPTTDTYTMLINVYGKESKSHMAQNIFDEMRTQRCKP 293

Query: 466 GPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
              T+T LV+ L R  L  +AE++  ++ E G  P      +L + Y+RAG    A +  
Sbjct: 294 NICTFTALVNALAREGLCEKAEEIFEQMQEAGYEPDVYAYNALMESYSRAGFPYGAAEIF 353

Query: 526 GFLEAKKEQMG--PD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
             +    + MG  PD   +  +++     G  +DAQ V   M+  G   + +  + L+S+
Sbjct: 354 SLM----QHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEEMKRIGITPTMKSHMLLLSA 409

Query: 582 QT 583
            +
Sbjct: 410 YS 411



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 91/202 (45%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ ++DA+ +    EDA+ + ++M   GI P + +  +L+  YS AGN+ + ++    + 
Sbjct: 368 YNIMVDAYGRAGLHEDAQAVFEEMKRIGITPTMKSHMLLLSAYSSAGNVAKCEDIIGQMH 427

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +PD  V NSM+  Y   GQ      L   M           Y  L+  + + G V 
Sbjct: 428 KSGLKPDTFVMNSMLNLYGRLGQFGKMEDLFSTMQKGPCRADISTYNILINVYGRAGFVE 487

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
              ++  ++  +  +P + + T  + AY +     +    F+ MI  G  PD      ++
Sbjct: 488 RMEELFQLLPAKNLEPDVVTWTSRIGAYSRKKLYKRCLELFEKMIDAGCYPDGGTAKVLL 547

Query: 440 AAYGKKNLLDKALNLLLELEKD 461
           +A   +  +++  N++  + KD
Sbjct: 548 SACSSEEQIEQVTNVVRTMHKD 569


>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 716

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 139/292 (47%), Gaps = 2/292 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E     +V  Y+ L++   +   L+DA+ + K+M E G+ PD  T T L+H Y K GN
Sbjct: 425 MVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGN 484

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           + +A   FE++     +PD   YN+++  +   G+ +    L   MI+  I  S   +  
Sbjct: 485 MTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSI 544

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+  F   G V  A ++ + M+ +  +PTL +C  +++ Y +AG+  +A    + MI  G
Sbjct: 545 LINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEG 604

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD     ++I ++ K+   D+A  L+  +E+ G  P   TY  ++    R   + EAE
Sbjct: 605 VPPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHGRMQEAE 664

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD 539
            +L K+ + G  P      SL + Y      K+A +     E  +    PDD
Sbjct: 665 MVLHKMIDKGINPDKSTYTSLINGYVSKDNMKEAFRVHD--EMLQRGFVPDD 714



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 132/288 (45%), Gaps = 5/288 (1%)

Query: 263 LIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG 322
           L+++  KE+  E AER+  +M + G+VPD+++ + +V ++S+ G L RA   FE ++  G
Sbjct: 336 LVESCRKEDVWE-AERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVG 394

Query: 323 FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAG 382
             PD  +Y  +I  Y         + + + M+  G       Y  LL    +   +  A 
Sbjct: 395 LVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDAD 454

Query: 383 QITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAY 442
           ++   M      P   + T L+  Y + G+  +A S F+ M     KPD     +++  +
Sbjct: 455 ELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGF 514

Query: 443 GKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPF 502
            K   ++KA  L  ++      P   ++++L++    L L++EA +L  ++ E G  P  
Sbjct: 515 CKVGEMEKAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTL 574

Query: 503 KIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLL 548
               ++   Y RAG   KA   L  + +  E + PD   +  +IN  +
Sbjct: 575 VTCNTIIKGYLRAGNLSKANDFLNTMIS--EGVPPDCITYNTLINSFV 620



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/305 (23%), Positives = 138/305 (45%), Gaps = 4/305 (1%)

Query: 255 TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA 314
            NV   + +++A  K+  L++    L +M E G+  D+VT   LV+ Y + G +  A   
Sbjct: 222 VNVYTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRGLVSEAFGL 281

Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
            + +   G +P    YN++I      G  +    ++D M+  G+  +   +  +L    +
Sbjct: 282 VDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCR 341

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
             DV  A ++ N M      P L S + +V  + + G+  +A + F+ M  +G  PD   
Sbjct: 342 KEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVI 401

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
              +I  Y + + +  AL +  E+ + G      TY  L++ L R +++++A++L  ++ 
Sbjct: 402 YTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMV 461

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGF 552
           E G  P F    +L   Y + G   KAL    F       + PD   +  +++G    G 
Sbjct: 462 ERGVFPDFYTLTTLIHGYCKDGNMTKALSL--FETMTLRSLKPDVVTYNTLMDGFCKVGE 519

Query: 553 LQDAQ 557
           ++ A+
Sbjct: 520 MEKAK 524



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 61/264 (23%), Positives = 112/264 (42%), Gaps = 5/264 (1%)

Query: 292 IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVD 351
           +V   +L+  Y +A  L    EAF+ LR  GF       N+++ A V  G   L   + +
Sbjct: 154 VVVFDLLIRTYVQARKLREGSEAFQLLRKRGFCVSINACNALLGAIVKVGWVDLAWKVYE 213

Query: 352 MMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAG 411
             + SG   +      ++ +  + G +   G   + M  +     L +   LV AY + G
Sbjct: 214 DFVKSGNIVNVYTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRG 273

Query: 412 DPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYT 471
              +A    D M   G KP      ++I    K+   ++A  +L E+   G  P  AT+ 
Sbjct: 274 LVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFN 333

Query: 472 VLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK 531
            ++    R + + EAE++  ++ + G  P      S+  +++R G   +AL    F + K
Sbjct: 334 PMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAY--FEKMK 391

Query: 532 KEQMGPDDFERIINGLLAGGFLQD 555
              + PD    +I  +L  G+ ++
Sbjct: 392 GVGLVPD---TVIYTILINGYCRN 412



 Score = 45.8 bits (107), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 9/149 (6%)

Query: 185 KPITGKCKLITDKIL---SLEKEEDPSPLLAEWKELLQPSRIDWINLLDR-LREQN-TQL 239
           KP    C  I    L   +L K  D   L     E + P  I +  L++  ++E+N  + 
Sbjct: 571 KPTLVTCNTIIKGYLRAGNLSKANDF--LNTMISEGVPPDCITYNTLINSFVKEENFDRA 628

Query: 240 YFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLV 299
           +F +  +   E     N+  Y+ ++   ++   +++AE +L KM + GI PD  T T L+
Sbjct: 629 FFLINNM--EERGLLPNLVTYNAILGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYTSLI 686

Query: 300 HMYSKAGNLDRAKEAFESLRSHGFQPDKK 328
           + Y    N+  A    + +   GF PD K
Sbjct: 687 NGYVSKDNMKEAFRVHDEMLQRGFVPDDK 715


>gi|357138821|ref|XP_003570985.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Brachypodium distachyon]
          Length = 613

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 97/374 (25%), Positives = 166/374 (44%), Gaps = 12/374 (3%)

Query: 214 WKEL--LQPSRIDWINLLD-----RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDA 266
           W+ L  + P+   W ++L+     RL  Q   +   V E ++   SF+ ++  Y+ LIDA
Sbjct: 138 WESLDNIPPTHNLWDDILNVAVQLRLNRQWDPI-ISVCEWIVYRSSFRPDIICYNLLIDA 196

Query: 267 HAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPD 326
           + ++  L  AE I   + E   VP   T  +L+  Y  A +L RA+     ++ HG  P 
Sbjct: 197 YGRKRQLNKAESIYAAVLEAQCVPTEDTYALLLRAYCNARSLHRAEGVISEMQEHGIPPS 256

Query: 327 KKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITN 386
             VYN+ +   + A      + +   M       + E Y  ++  + +      A +I N
Sbjct: 257 ATVYNAYLDGLLKARCTVKAVEVYQRMKKERCRTNTETYTLMINVYGKSKQPMSAMKIFN 316

Query: 387 IMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKN 446
            M+    +  + + T LV A+ + G  ++A   F+ M + GH+PD     +++ AY +  
Sbjct: 317 EMQSIGCKANICTYTALVNAFAREGLCEKAEEVFEQMQQAGHEPDVYAYNALMEAYSRAG 376

Query: 447 LLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQV 506
               A  +   ++  G EP  A+Y +LVD  GR  L  EAE     + + G AP  K  +
Sbjct: 377 FPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHREAEATFESLKQQGMAPTMKSHM 436

Query: 507 SLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF--ERIINGLLAGGFLQDAQRVHGLME 564
            L   +AR+G   +  Q +  L   K  + PD F    +++     G L D +R+   M+
Sbjct: 437 LLLSAHARSGNVGRCEQVMAQLH--KSGLRPDTFALNAMLHAYARAGRLDDMERLLAAMD 494

Query: 565 AQGFAASERLKVAL 578
             G A      VA+
Sbjct: 495 LAGSADVGSHNVAV 508



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/298 (20%), Positives = 117/298 (39%), Gaps = 43/298 (14%)

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL 349
           PDI+   +L+  Y +   L++A+  + ++      P +  Y  ++ AY NA        +
Sbjct: 185 PDIICYNLLIDAYGRKRQLNKAESIYAAVLEAQCVPTEDTYALLLRAYCNARSLHRAEGV 244

Query: 350 VDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409
           +  M   GI  S  +Y A L    +      A ++   M+ E  +   E+ TL       
Sbjct: 245 ISEMQEHGIPPSATVYNAYLDGLLKARCTVKAVEVYQRMKKERCRTNTETYTL------- 297

Query: 410 AGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPAT 469
                                       MI  YGK      A+ +  E++  G +    T
Sbjct: 298 ----------------------------MINVYGKSKQPMSAMKIFNEMQSIGCKANICT 329

Query: 470 YTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLE 529
           YT LV+   R  L  +AE++  ++ + G  P      +L + Y+RAG  + A +    + 
Sbjct: 330 YTALVNAFAREGLCEKAEEVFEQMQQAGHEPDVYAYNALMEAYSRAGFPQGASEIFSLM- 388

Query: 530 AKKEQMG--PD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQT 583
              + MG  PD   +  +++     G  ++A+     ++ QG A + +  + L+S+  
Sbjct: 389 ---QHMGCEPDRASYNILVDAYGRAGLHREAEATFESLKQQGMAPTMKSHMLLLSAHA 443



 Score = 45.4 bits (106), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 65/147 (44%), Gaps = 14/147 (9%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L  ++F  N      ++ A+A+   L+D ER+L  M+  G   D+ +  V V+ Y++AG 
Sbjct: 463 LRPDTFALNA-----MLHAYARAGRLDDMERLLAAMDLAG-SADVGSHNVAVNAYARAGY 516

Query: 308 LDRAKEAFESLRSH-----GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE 362
           L R + AFE +R       G   D   + S +  Y    +    + + + M+ +G     
Sbjct: 517 LGRMEAAFEGIRRRKGKKGGIDADVVSWTSRMGGYARKKEYGKCLEIFEEMVDAGCYPDA 576

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIMR 389
                L+   A C D R   Q+  I+R
Sbjct: 577 GTAKVLM---AACSDERQVEQVAAIVR 600


>gi|357154512|ref|XP_003576808.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Brachypodium distachyon]
          Length = 801

 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 106/371 (28%), Positives = 172/371 (46%), Gaps = 23/371 (6%)

Query: 220 PSRIDWINLLDRLREQNTQL-YFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAER 278
           P+   +I L+D L ++   +   K+ + +L E     +V+ Y+ L+ +   E  +EDA R
Sbjct: 212 PNSTTYIVLMDGLCKRGMAVDALKMFDEML-ERGIVPDVKIYTVLLSSLCNEGRIEDAGR 270

Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338
           +L  M ENG  PD VT TV +    KAG +D A   FE L+  GF      Y+ +I    
Sbjct: 271 LLCSMKENGCPPDEVTYTVFLSGLCKAGRVDEAFHRFELLQDGGFTLGLIGYSCLIDGLF 330

Query: 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398
            AG+   G+S    M+   I     +Y  L+R FA+ G  + A  + + M+ + F P   
Sbjct: 331 QAGRFDEGLSYYTEMLGKSISPDITLYTILIRRFAEAGRTKDAFLLLDEMKDKGFVPDTF 390

Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
               L++A    G+ D+A+S    M++     D      MI    KK L+DKA+ +  E+
Sbjct: 391 CYNTLLKALFDVGNIDRAQSLMSEMLQNNVVLDSTTHNIMICGLCKKGLIDKAMQVFDEM 450

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVS----------- 507
            + G  P   TY  L+D L R  ++ EA  L  K+ E+G  P   ++++           
Sbjct: 451 GEHGCHPTVMTYNALIDGLYRAGMLEEARMLFHKM-EMGNNPSLFLRLTLGANQVRDTES 509

Query: 508 ---LCDMYARAGIEKKALQAL-GFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHG 561
              L D   ++G   KA + L G +E+    + PD   +  +INGL     L  A R+  
Sbjct: 510 LRKLVDGMCQSGQVLKAYKLLRGIIESG---VVPDVVTYNTLINGLCKAKNLDGALRLFK 566

Query: 562 LMEAQGFAASE 572
            ++ +G +  E
Sbjct: 567 ELQLKGISPDE 577



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 127/331 (38%), Gaps = 32/331 (9%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           +S   ++  Y+ LI   A+    +DA  +L +M + G VPD      L+      GN+DR
Sbjct: 348 KSISPDITLYTILIRRFAEAGRTKDAFLLLDEMKDKGFVPDTFCYNTLLKALFDVGNIDR 407

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A+     +  +    D   +N MI      G     M + D M   G   +   Y AL+ 
Sbjct: 408 AQSLMSEMLQNNVVLDSTTHNIMICGLCKKGLIDKAMQVFDEMGEHGCHPTVMTYNALID 467

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTL--------------ESCTLLVEAYGQAGDPDQA 416
              + G +  A  + + M +    P+L              ES   LV+   Q+G   +A
Sbjct: 468 GLYRAGMLEEARMLFHKMEMGN-NPSLFLRLTLGANQVRDTESLRKLVDGMCQSGQVLKA 526

Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476
                 +I  G  PD     ++I    K   LD AL L  EL+  G  P   TY  L+D 
Sbjct: 527 YKLLRGIIESGVVPDVVTYNTLINGLCKAKNLDGALRLFKELQLKGISPDEITYGTLIDG 586

Query: 477 LGRLQLINEAEQLLGKISELGEAPPFKI----QVSLCDMYARAGIEKKALQALGF---LE 529
           L R    N+A  L   I   G  P   I      SLC M       KK  QA+       
Sbjct: 587 LWRAHRENDATMLFQNILRSGGFPSLPIYNTMMRSLCRM-------KKLSQAINLWLDYL 639

Query: 530 AKKEQMGPDDFERIING--LLAGGFLQDAQR 558
            KK  + P+D E I N       GFL +  +
Sbjct: 640 PKKYNLSPED-EVIANARKCFEDGFLDETVK 669



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 134/314 (42%), Gaps = 13/314 (4%)

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A  +  +M  +G +P+  T  VL+    K G    A + F+ +   G  PD K+Y  ++ 
Sbjct: 198 ALALYNRMVSSGCLPNSTTYIVLMDGLCKRGMAVDALKMFDEMLERGIVPDVKIYTVLLS 257

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
           +  N G+ +    L+  M  +G    E  Y   L    + G V  A     +++   F  
Sbjct: 258 SLCNEGRIEDAGRLLCSMKENGCPPDEVTYTVFLSGLCKAGRVDEAFHRFELLQDGGFTL 317

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
            L   + L++   QAG  D+  S +  M+     PD      +I  + +      A  LL
Sbjct: 318 GLIGYSCLIDGLFQAGRFDEGLSYYTEMLGKSISPDITLYTILIRRFAEAGRTKDAFLLL 377

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE---LGEAPPFKIQVS-LCDM 511
            E++  GF P    Y  L+  L  +  I+ A+ L+ ++ +   + ++    I +  LC  
Sbjct: 378 DEMKDKGFVPDTFCYNTLLKALFDVGNIDRAQSLMSEMLQNNVVLDSTTHNIMICGLC-- 435

Query: 512 YARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
             + G+  KA+Q   F E  +    P    +  +I+GL   G L++A+ +   ME  G  
Sbjct: 436 --KKGLIDKAMQV--FDEMGEHGCHPTVMTYNALIDGLYRAGMLEEARMLFHKME-MGNN 490

Query: 570 ASERLKVALISSQT 583
            S  L++ L ++Q 
Sbjct: 491 PSLFLRLTLGANQV 504



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 114/272 (41%), Gaps = 13/272 (4%)

Query: 298 LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG 357
           LV  +S AG    A EAF  +     +P   VYN++    V+ G   L ++L + M++SG
Sbjct: 150 LVLAHSSAGRHQEAVEAFSRMGDFDCRPTAFVYNAVFQVLVDRGVILLALALYNRMVSSG 209

Query: 358 IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
              +   Y+ L+    + G    A ++ + M      P ++  T+L+ +    G  + A 
Sbjct: 210 CLPNSTTYIVLMDGLCKRGMAVDALKMFDEMLERGIVPDVKIYTVLLSSLCNEGRIEDAG 269

Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
                M   G  PD+      ++   K   +D+A +    L+  GF  G   Y+ L+D L
Sbjct: 270 RLLCSMKENGCPPDEVTYTVFLSGLCKAGRVDEAFHRFELLQDGGFTLGLIGYSCLIDGL 329

Query: 478 ---GRL-QLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE 533
              GR  + ++   ++LGK      +P   +   L   +A AG  K A   L   E K +
Sbjct: 330 FQAGRFDEGLSYYTEMLGK----SISPDITLYTILIRRFAEAGRTKDAFLLLD--EMKDK 383

Query: 534 QMGPDDFERIINGLLAGGF-LQDAQRVHGLME 564
              PD F    N LL   F + +  R   LM 
Sbjct: 384 GFVPDTF--CYNTLLKALFDVGNIDRAQSLMS 413



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 102/237 (43%), Gaps = 36/237 (15%)

Query: 262 KLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSH 321
           KL+D   +   +  A ++L+ + E+G+VPD+VT   L++   KA NLD A   F+ L+  
Sbjct: 512 KLVDGMCQSGQVLKAYKLLRGIIESGVVPDVVTYNTLINGLCKAKNLDGALRLFKELQLK 571

Query: 322 GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGA 381
           G  PD+  Y ++I     A +      L   ++ SG   S  IY  ++RS  +   ++  
Sbjct: 572 GISPDEITYGTLIDGLWRAHRENDATMLFQNILRSGGFPSLPIYNTMMRSLCR---MKKL 628

Query: 382 GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR-LGHKPDDRCTASMIA 440
            Q  N+                                 DY+ +     P+D   A+   
Sbjct: 629 SQAINLW-------------------------------LDYLPKKYNLSPEDEVIANARK 657

Query: 441 AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
            + +   LD+ +  L+++++      P  YT+ V  L +++ I++A ++   + E G
Sbjct: 658 CF-EDGFLDETVKELIKIDQVYGSLNPNPYTIWVIGLCQVRKIDDALRIFHILEEFG 713


>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
            thaliana]
          Length = 1184

 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 159/349 (45%), Gaps = 6/349 (1%)

Query: 223  IDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKK 282
            I ++  L R++E +  L      L++  + +  +V  YS +++ + +   L+   ++++ 
Sbjct: 696  IHFVCQLGRIKEAHHLL------LLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEV 749

Query: 283  MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
            M   G+ P+      ++ +  +   L  A+EAF  +   G  PD  VY ++I  +   G 
Sbjct: 750  MKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGD 809

Query: 343  PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402
             +        M +  I      Y A++  F Q GD+  AG++ + M  +  +P   + T 
Sbjct: 810  IRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTE 869

Query: 403  LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
            L+  Y +AG    A    ++MI+ G  P+     ++I    K+  LD A  LL E+ K G
Sbjct: 870  LINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIG 929

Query: 463  FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522
             +P   TY  +V+ L +   I EA +L+G+    G         +L D Y ++G   KA 
Sbjct: 930  LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQ 989

Query: 523  QALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAAS 571
            + L  +  K  Q     F  ++NG    G L+D +++   M A+G A +
Sbjct: 990  EILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPN 1038



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 124/272 (45%), Gaps = 9/272 (3%)

Query: 260  YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
            +++LI+ + K   ++DA R+   M + G  P++VT T L+    K G+LD A E    + 
Sbjct: 867  FTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMW 926

Query: 320  SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
              G QP+   YNS++     +G  +  + LV     +G+      Y  L+ ++ + G++ 
Sbjct: 927  KIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMD 986

Query: 380  GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
             A +I   M  +  QPT+ +  +L+  +   G  +      ++M+  G  P+     S++
Sbjct: 987  KAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLV 1046

Query: 440  AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
              Y  +N L  A  +  ++   G  P   TY  LV    + + + EA  L  ++   G  
Sbjct: 1047 KQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKG-- 1104

Query: 500  PPFKIQVSLCDMYARAGIEKKALQALGFLEAK 531
              F + VS   +  +  +++K      FLEA+
Sbjct: 1105 --FSVSVSTYSVLIKGFLKRKK-----FLEAR 1129



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/328 (21%), Positives = 132/328 (40%), Gaps = 39/328 (11%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ +I    +   +++A  +L  M   G  PD+++ + +V+ Y + G LD+  +  
Sbjct: 688 NVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLI 747

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E ++  G +P+  +Y S+I       +          MI  GI     +Y  L+  F + 
Sbjct: 748 EVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKR 807

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           GD+R A +    M   +  P + + T ++  + Q GD          M+  G        
Sbjct: 808 GDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGD----------MVEAG-------- 849

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
                             L  E+   G EP   T+T L++   +   + +A ++   + +
Sbjct: 850 -----------------KLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQ 892

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF--ERIINGLLAGGFL 553
            G +P      +L D   + G    A + L   E  K  + P+ F    I+NGL   G +
Sbjct: 893 AGCSPNVVTYTTLIDGLCKEGDLDSANELLH--EMWKIGLQPNIFTYNSIVNGLCKSGNI 950

Query: 554 QDAQRVHGLMEAQGFAASERLKVALISS 581
           ++A ++ G  EA G  A       L+ +
Sbjct: 951 EEAVKLVGEFEAAGLNADTVTYTTLMDA 978



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 111/244 (45%)

Query: 256  NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
            NV  Y+ LID   KE  L+ A  +L +M + G+ P+I T   +V+   K+GN++ A +  
Sbjct: 898  NVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLV 957

Query: 316  ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
                + G   D   Y +++ AY  +G+      ++  M+  G++ +   +  L+  F   
Sbjct: 958  GEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLH 1017

Query: 376  GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
            G +    ++ N M  +   P   +   LV+ Y    +   A + +  M   G  PD +  
Sbjct: 1018 GMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTY 1077

Query: 436  ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +++  + K   + +A  L  E++  GF    +TY+VL+    + +   EA ++  ++  
Sbjct: 1078 ENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRR 1137

Query: 496  LGEA 499
             G A
Sbjct: 1138 EGLA 1141



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 107/221 (48%), Gaps = 6/221 (2%)

Query: 214  WKELLQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEES--FQTNVRDYSKLIDAHAKE 270
            WK  LQP+   + ++++ L +  N +   +  +LV   E+     +   Y+ L+DA+ K 
Sbjct: 926  WKIGLQPNIFTYNSIVNGLCKSGNIE---EAVKLVGEFEAAGLNADTVTYTTLMDAYCKS 982

Query: 271  NCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVY 330
              ++ A+ ILK+M   G+ P IVT  VL++ +   G L+  ++    + + G  P+   +
Sbjct: 983  GEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTF 1042

Query: 331  NSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRI 390
            NS++  Y      K   ++   M + G+    + Y  L++   +  +++ A  +   M+ 
Sbjct: 1043 NSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKG 1102

Query: 391  EEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
            + F  ++ + ++L++ + +     +AR  FD M R G   D
Sbjct: 1103 KGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAAD 1143



 Score = 43.1 bits (100), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 48/110 (43%)

Query: 256  NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
            N   ++ L+  +   N L+ A  I K M   G+ PD  T   LV  + KA N+  A   F
Sbjct: 1038 NATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLF 1097

Query: 316  ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
            + ++  GF      Y+ +I  ++   +      + D M   G+   +EI+
Sbjct: 1098 QEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIF 1147



 Score = 39.7 bits (91), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 18/74 (24%), Positives = 37/74 (50%)

Query: 258  RDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFES 317
            + Y  L+  H K   +++A  + ++M   G    + T +VL+  + K      A+E F+ 
Sbjct: 1075 KTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQ 1134

Query: 318  LRSHGFQPDKKVYN 331
            +R  G   DK++++
Sbjct: 1135 MRREGLAADKEIFD 1148


>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g05670, mitochondrial; Flags: Precursor
 gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
 gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
          Length = 741

 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 158/347 (45%), Gaps = 6/347 (1%)

Query: 223 IDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKK 282
           I ++  L R++E +  L      L++  + +  +V  YS +++ + +   L+   ++++ 
Sbjct: 253 IHFVCQLGRIKEAHHLL------LLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEV 306

Query: 283 MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
           M   G+ P+      ++ +  +   L  A+EAF  +   G  PD  VY ++I  +   G 
Sbjct: 307 MKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGD 366

Query: 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402
            +        M +  I      Y A++  F Q GD+  AG++ + M  +  +P   + T 
Sbjct: 367 IRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTE 426

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           L+  Y +AG    A    ++MI+ G  P+     ++I    K+  LD A  LL E+ K G
Sbjct: 427 LINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIG 486

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522
            +P   TY  +V+ L +   I EA +L+G+    G         +L D Y ++G   KA 
Sbjct: 487 LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQ 546

Query: 523 QALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
           + L  +  K  Q     F  ++NG    G L+D +++   M A+G A
Sbjct: 547 EILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIA 593



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 124/272 (45%), Gaps = 9/272 (3%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           +++LI+ + K   ++DA R+   M + G  P++VT T L+    K G+LD A E    + 
Sbjct: 424 FTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMW 483

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G QP+   YNS++     +G  +  + LV     +G+      Y  L+ ++ + G++ 
Sbjct: 484 KIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMD 543

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A +I   M  +  QPT+ +  +L+  +   G  +      ++M+  G  P+     S++
Sbjct: 544 KAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLV 603

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             Y  +N L  A  +  ++   G  P   TY  LV    + + + EA  L  ++   G  
Sbjct: 604 KQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKG-- 661

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAK 531
             F + VS   +  +  +++K      FLEA+
Sbjct: 662 --FSVSVSTYSVLIKGFLKRKK-----FLEAR 686



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/328 (22%), Positives = 133/328 (40%), Gaps = 39/328 (11%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ +I    +   +++A  +L  M   G  PD+++ + +V+ Y + G LD+  +  
Sbjct: 245 NVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLI 304

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E ++  G +P+  +Y S+I       +          MI  GI     +Y  L+  F + 
Sbjct: 305 EVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKR 364

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           GD+R A +    M   +  P + + T ++  + Q GD  +A                   
Sbjct: 365 GDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEA------------------- 405

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
                  GK         L  E+   G EP   T+T L++   +   + +A ++   + +
Sbjct: 406 -------GK---------LFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQ 449

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF--ERIINGLLAGGFL 553
            G +P      +L D   + G    A + L   E  K  + P+ F    I+NGL   G +
Sbjct: 450 AGCSPNVVTYTTLIDGLCKEGDLDSANELLH--EMWKIGLQPNIFTYNSIVNGLCKSGNI 507

Query: 554 QDAQRVHGLMEAQGFAASERLKVALISS 581
           ++A ++ G  EA G  A       L+ +
Sbjct: 508 EEAVKLVGEFEAAGLNADTVTYTTLMDA 535



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 111/244 (45%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ LID   KE  L+ A  +L +M + G+ P+I T   +V+   K+GN++ A +  
Sbjct: 455 NVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLV 514

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
               + G   D   Y +++ AY  +G+      ++  M+  G++ +   +  L+  F   
Sbjct: 515 GEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLH 574

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +    ++ N M  +   P   +   LV+ Y    +   A + +  M   G  PD +  
Sbjct: 575 GMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTY 634

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            +++  + K   + +A  L  E++  GF    +TY+VL+    + +   EA ++  ++  
Sbjct: 635 ENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRR 694

Query: 496 LGEA 499
            G A
Sbjct: 695 EGLA 698



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 115/244 (47%), Gaps = 10/244 (4%)

Query: 195 TDKILSLEKEED---PSPLLAE-WKELLQPSRIDWINLLDRL-REQNTQLYFKVAELV-- 247
           T  I  L KE D    + LL E WK  LQP+   + ++++ L +  N +   +  +LV  
Sbjct: 460 TTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIE---EAVKLVGE 516

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
                   +   Y+ L+DA+ K   ++ A+ ILK+M   G+ P IVT  VL++ +   G 
Sbjct: 517 FEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGM 576

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L+  ++    + + G  P+   +NS++  Y      K   ++   M + G+    + Y  
Sbjct: 577 LEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYEN 636

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L++   +  +++ A  +   M+ + F  ++ + ++L++ + +     +AR  FD M R G
Sbjct: 637 LVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREG 696

Query: 428 HKPD 431
              D
Sbjct: 697 LAAD 700



 Score = 42.7 bits (99), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 48/110 (43%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N   ++ L+  +   N L+ A  I K M   G+ PD  T   LV  + KA N+  A   F
Sbjct: 595 NATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLF 654

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
           + ++  GF      Y+ +I  ++   +      + D M   G+   +EI+
Sbjct: 655 QEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIF 704



 Score = 39.7 bits (91), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 18/74 (24%), Positives = 37/74 (50%)

Query: 258 RDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFES 317
           + Y  L+  H K   +++A  + ++M   G    + T +VL+  + K      A+E F+ 
Sbjct: 632 KTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQ 691

Query: 318 LRSHGFQPDKKVYN 331
           +R  G   DK++++
Sbjct: 692 MRREGLAADKEIFD 705


>gi|223948189|gb|ACN28178.1| unknown [Zea mays]
 gi|413935735|gb|AFW70286.1| hypothetical protein ZEAMMB73_980179 [Zea mays]
          Length = 597

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 157/344 (45%), Gaps = 5/344 (1%)

Query: 224 DWINLLDRLR-EQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKK 282
           D +N+  +LR  +  +    V E VL   SF+ ++  Y+ LIDA+ ++  L +AE     
Sbjct: 138 DIVNVAVQLRLNRQWEPIITVCEWVLRRSSFRPDIICYNLLIDAYGQKRQLSEAEAAYMA 197

Query: 283 MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
           + E   VP   T  +L+  Y  +G L RA+     ++ +G  P   VYN+ +   + A  
Sbjct: 198 LLEARCVPTEDTYALLLRAYCGSGQLHRAEGVISEMQRNGIPPTATVYNAYLDGLLKARC 257

Query: 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402
            +  + +   M       + E Y  ++  + +      + ++   M+    +P + + T 
Sbjct: 258 SEKAVEVYQRMKKERCRTNTETYTLMINVYGKANQPMSSLRVFREMKSVGCKPNICTYTA 317

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           LV A+ + G  ++A   F+ M + GH+PD     +++ AY +  L   A  +   +E  G
Sbjct: 318 LVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMG 377

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522
            EP  A+Y +LVD  GR  L  EAE    ++ + G  P  K  + L   +AR+G   +  
Sbjct: 378 CEPDRASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCE 437

Query: 523 QALGFLEAKKEQMGPDDF--ERIINGLLAGGFLQDAQRVHGLME 564
           + +  L   K  + PD F    ++N     G L D +R+   ME
Sbjct: 438 EVMAQLH--KSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAME 479



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 139/288 (48%), Gaps = 9/288 (3%)

Query: 231 RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVP 290
           R  E+  ++Y +     + +E  +TN   Y+ +I+ + K N    + R+ ++M   G  P
Sbjct: 256 RCSEKAVEVYQR-----MKKERCRTNTETYTLMINVYGKANQPMSSLRVFREMKSVGCKP 310

Query: 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV 350
           +I T T LV+ +++ G  ++A+E FE ++  G +PD   YN+++ AY  AG P+    + 
Sbjct: 311 NICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIF 370

Query: 351 DMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410
            +M   G E     Y  L+ +F + G  + A      ++ +  +PT++S  LL+ A+ ++
Sbjct: 371 SLMEHMGCEPDRASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARS 430

Query: 411 GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK-DGF---EPG 466
           G+  +       + + G +PD     +M+ AYG+   LD    L   +E+ DG     P 
Sbjct: 431 GNVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAMERGDGAIAGAPD 490

Query: 467 PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
            +TY V+V+  GR   ++  E     ++  G A       S    YAR
Sbjct: 491 TSTYNVMVNAYGRAGYLDRMEAAFRSLAARGLAADVVTWTSRIGAYAR 538



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 107/265 (40%), Gaps = 53/265 (20%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  Y+ L++A A+E   E AE + ++M + G  PD+     L+  YS+AG    A E F
Sbjct: 311 NICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIF 370

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAG-----------------QP--KLGMSLVDMMITS 356
             +   G +PD+  YN ++ A+  AG                 +P  K  M L+     S
Sbjct: 371 SLMEHMGCEPDRASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARS 430

Query: 357 G-IERSEEIYL---------------ALLRSFAQCGDV-----------RGAGQITNIMR 389
           G + R EE+                 A+L ++ + G +           RG G I     
Sbjct: 431 GNVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAMERGDGAIAG--- 487

Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD 449
                P   +  ++V AYG+AG  D+  + F  +   G   D     S I AY +K    
Sbjct: 488 ----APDTSTYNVMVNAYGRAGYLDRMEAAFRSLAARGLAADVVTWTSRIGAYARKKEYG 543

Query: 450 KALNLLLELEKDGFEPGPATYTVLV 474
           + L +  E+   G  P   T  VL+
Sbjct: 544 QCLRVFEEMVDAGCYPDAGTAKVLL 568



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/298 (22%), Positives = 120/298 (40%), Gaps = 43/298 (14%)

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL 349
           PDI+   +L+  Y +   L  A+ A+ +L      P +  Y  ++ AY  +GQ      +
Sbjct: 170 PDIICYNLLIDAYGQKRQLSEAEAAYMALLEARCVPTEDTYALLLRAYCGSGQLHRAEGV 229

Query: 350 VDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409
           +  M  +GI  +  +Y A L    +      A ++   M+ E  +   E+ TL       
Sbjct: 230 ISEMQRNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTETYTL------- 282

Query: 410 AGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPAT 469
                                       MI  YGK N    +L +  E++  G +P   T
Sbjct: 283 ----------------------------MINVYGKANQPMSSLRVFREMKSVGCKPNICT 314

Query: 470 YTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLE 529
           YT LV+   R  L  +AE++  ++ + G  P      +L + Y+RAG+ + A +    + 
Sbjct: 315 YTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLM- 373

Query: 530 AKKEQMG--PD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQT 583
              E MG  PD   +  +++     G  Q+A+     ++ QG   + +  + L+S+  
Sbjct: 374 ---EHMGCEPDRASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHA 428



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 12/146 (8%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNE-NGIV---PDIVTSTVLVHMYS 303
           L  ++F  N      +++A+ +   L+D ER+   M   +G +   PD  T  V+V+ Y 
Sbjct: 448 LRPDTFALNA-----MLNAYGRAGRLDDMERLFAAMERGDGAIAGAPDTSTYNVMVNAYG 502

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363
           +AG LDR + AF SL + G   D   + S I AY    +    + + + M+ +G      
Sbjct: 503 RAGYLDRMEAAFRSLAARGLAADVVTWTSRIGAYARKKEYGQCLRVFEEMVDAGCYPDAG 562

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMR 389
               LL   A C D R   Q+  I+R
Sbjct: 563 TAKVLL---AACSDERQVEQVKAIVR 585


>gi|147779268|emb|CAN70089.1| hypothetical protein VITISV_038171 [Vitis vinifera]
          Length = 838

 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 169/360 (46%), Gaps = 10/360 (2%)

Query: 194 ITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLD-----RLREQNTQLYFKVAELVL 248
           I  +IL   ++E+ S  +    + L P+   W ++++     RL +Q   +   +   +L
Sbjct: 31  IAQQILDFVQKEERSNRIWGSLDSLSPNHTTWDDIINVAVQLRLNKQWDAIVL-ICGWIL 89

Query: 249 SEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNL 308
              SF  +V  Y+ LIDA+ +++  + AE    ++ E   VP   T  +L+  Y  +G L
Sbjct: 90  YRSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGLL 149

Query: 309 DRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLAL 368
           ++A+  F  +R +GF P   VYN+ I   +  G  +  + + + M     + S   Y  L
Sbjct: 150 EKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTML 209

Query: 369 LRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH 428
           +  + +      A ++ + MR ++ +P + + T LV A+ + G  ++A   F+ +   G 
Sbjct: 210 INLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGL 269

Query: 429 KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQ 488
           +PD     +++ AY +      A  +   ++  G EP  A+Y ++VD  GR  L  +A+ 
Sbjct: 270 EPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQA 329

Query: 489 LLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLL 548
           +   +  LG  P  K  + L   Y+RAG   K  + +   +  K  + PD F  ++N +L
Sbjct: 330 VFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVN--QMHKSGIKPDTF--VLNSML 385



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 145/316 (45%), Gaps = 6/316 (1%)

Query: 201 LEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVR 258
           LEK E    + AE ++    PS + +   +D L +  +TQ   ++ E  +  +  Q +  
Sbjct: 149 LEKAEA---VFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFER-MKRDRCQPSTA 204

Query: 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318
            Y+ LI+ + K +    A ++  +M      P+I T T LV+ +++ G  ++A+E FE L
Sbjct: 205 TYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQL 264

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
           +  G +PD   YN+++ AY  AG P     +  +M   G E     Y  ++ ++ + G  
Sbjct: 265 QEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLH 324

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             A  +  +M+     PT++S  LL+ AY +AG   +     + M + G KPD     SM
Sbjct: 325 EDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSM 384

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           +  YG+    +K   +L  +EK  +    +TY +L++  GR       E+L   +     
Sbjct: 385 LNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEELFRSLPARNL 444

Query: 499 APPFKIQVSLCDMYAR 514
            P      S    Y+R
Sbjct: 445 IPDVVTWTSRIGAYSR 460



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 115/270 (42%), Gaps = 8/270 (2%)

Query: 318 LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
           L    F PD   YN +I AY      K   S    ++ +    +E+ Y  LL+++   G 
Sbjct: 89  LYRSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGL 148

Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
           +  A  +   MR   F P+       ++   + GD  +A   F+ M R   +P       
Sbjct: 149 LEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTM 208

Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           +I  YGK +    AL +  E+     +P   T+T LV+   R  L  +AE++  ++ E G
Sbjct: 209 LINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAG 268

Query: 498 EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG--PD--DFERIINGLLAGGFL 553
             P      +L + Y+RAG    A +    +    + MG  PD   +  +++     G  
Sbjct: 269 LEPDVYAYNALMEAYSRAGFPYGAAEIFSLM----QHMGCEPDRASYNIMVDAYGRAGLH 324

Query: 554 QDAQRVHGLMEAQGFAASERLKVALISSQT 583
           +DAQ V  +M+  G   + +  + L+S+ +
Sbjct: 325 EDAQAVFEVMKRLGITPTMKSHMLLLSAYS 354



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 75/175 (42%), Gaps = 4/175 (2%)

Query: 387 IMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKN 446
           I+    F P +    LL++AYGQ     +A S +  ++     P +   A ++ AY    
Sbjct: 88  ILYRSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSG 147

Query: 447 LLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQV 506
           LL+KA  +  E+ K GF P    Y   +D L +     +A ++  ++      P      
Sbjct: 148 LLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYT 207

Query: 507 SLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRV 559
            L ++Y +A     AL+   F E + ++  P+   F  ++N     G  + A+ +
Sbjct: 208 MLINLYGKASKSYMALKV--FHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEI 260



 Score = 42.4 bits (98), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 7/103 (6%)

Query: 226 INLLDRLREQNTQLYFKVAELVLSEE--SFQTNVRDYSKLIDAHAKENCLEDAERILKKM 283
           +NL  RL +     + K+ E++ + E   +  ++  Y+ LI+ + +       E + + +
Sbjct: 385 LNLYGRLGQ-----FEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEELFRSL 439

Query: 284 NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPD 326
               ++PD+VT T  +  YS+    +R  E FE +   G  PD
Sbjct: 440 PARNLIPDVVTWTSRIGAYSRRKQYNRCLEVFEEMIDAGCYPD 482


>gi|226507918|ref|NP_001144813.1| uncharacterized protein LOC100277891 [Zea mays]
 gi|195647376|gb|ACG43156.1| hypothetical protein [Zea mays]
          Length = 597

 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 157/344 (45%), Gaps = 5/344 (1%)

Query: 224 DWINLLDRLR-EQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKK 282
           D +N+  +LR  +  +    V E VL   SF+ ++  Y+ LIDA+ ++  L +AE     
Sbjct: 138 DIVNVAVQLRLNRQWEPIITVCEWVLRRSSFRPDIICYNLLIDAYGQKRQLSEAEAAYMA 197

Query: 283 MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
           + E   VP   T  +L+  Y  +G L RA+     ++ +G  P   VYN+ +   + A  
Sbjct: 198 LLEARCVPTEDTYALLLRAYCGSGQLHRAEGVISEMQRNGIPPTATVYNAYLDGLLKARC 257

Query: 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402
            +  + +   M       + Z Y  ++  + +      + ++   M+    +P + + T 
Sbjct: 258 SEKAVEVYQRMKKERCRTNTZTYXLMINVYGKANQPMSSLRVFREMKSVGCKPNICTYTA 317

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           LV A+ + G  ++A   F+ M + GH+PD     +++ AY +  L   A  +   +E  G
Sbjct: 318 LVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMG 377

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522
            EP  A+Y +LVD  GR  L  EAE    ++ + G  P  K  + L   +AR+G   +  
Sbjct: 378 CEPDRASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCE 437

Query: 523 QALGFLEAKKEQMGPDDF--ERIINGLLAGGFLQDAQRVHGLME 564
           + +  L   K  + PD F    ++N     G L D +R+   ME
Sbjct: 438 EVMAQLH--KSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAME 479



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 138/288 (47%), Gaps = 9/288 (3%)

Query: 231 RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVP 290
           R  E+  ++Y +     + +E  +TN   Y  +I+ + K N    + R+ ++M   G  P
Sbjct: 256 RCSEKAVEVYQR-----MKKERCRTNTZTYXLMINVYGKANQPMSSLRVFREMKSVGCKP 310

Query: 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV 350
           +I T T LV+ +++ G  ++A+E FE ++  G +PD   YN+++ AY  AG P+    + 
Sbjct: 311 NICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIF 370

Query: 351 DMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410
            +M   G E     Y  L+ +F + G  + A      ++ +  +PT++S  LL+ A+ ++
Sbjct: 371 SLMEHMGCEPDRASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARS 430

Query: 411 GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK-DGFE---PG 466
           G+  +       + + G +PD     +M+ AYG+   LD    L   +E+ DG     P 
Sbjct: 431 GNVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAMERGDGASAGAPD 490

Query: 467 PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
            +TY VLV+  GR   ++  E     ++  G A       S    YAR
Sbjct: 491 TSTYNVLVNAYGRAGYLDRMEAAFRSLAARGLAADVVTWTSRIGAYAR 538



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 107/258 (41%), Gaps = 39/258 (15%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  Y+ L++A A+E   E AE + ++M + G  PD+     L+  YS+AG    A E F
Sbjct: 311 NICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIF 370

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G +PD+  YN ++ A+  AG  +   +    +   G+  + + ++ LL + A+ 
Sbjct: 371 SLMEHMGCEPDRASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARS 430

Query: 376 GDVRG-----------------------------AGQITNIMRI----------EEFQPT 396
           G+V                               AG++ ++ R+              P 
Sbjct: 431 GNVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAMERGDGASAGAPD 490

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
             +  +LV AYG+AG  D+  + F  +   G   D     S I AY +K    + L +  
Sbjct: 491 TSTYNVLVNAYGRAGYLDRMEAAFRSLAARGLAADVVTWTSRIGAYARKKEYGQCLRVFE 550

Query: 457 ELEKDGFEPGPATYTVLV 474
           E+   G  P   T  VL+
Sbjct: 551 EMVDAGCYPDAGTAKVLL 568



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 118/270 (43%), Gaps = 8/270 (2%)

Query: 318 LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
           LR   F+PD   YN +I AY    Q     +    ++ +    +E+ Y  LLR++   G 
Sbjct: 163 LRRSSFRPDIICYNLLIDAYGQKRQLSEAEAAYMALLEARCVPTEDTYALLLRAYCGSGQ 222

Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
           +  A  + + M+     PT       ++   +A   ++A   +  M +   + +      
Sbjct: 223 LHRAEGVISEMQRNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTZTYXL 282

Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           MI  YGK N    +L +  E++  G +P   TYT LV+   R  L  +AE++  ++ + G
Sbjct: 283 MINVYGKANQPMSSLRVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAG 342

Query: 498 EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG--PD--DFERIINGLLAGGFL 553
             P      +L + Y+RAG+ + A +    +    E MG  PD   +  +++     G  
Sbjct: 343 HEPDVYAYNALMEAYSRAGLPQGASEIFSLM----EHMGCEPDRASYNILVDAFGRAGLH 398

Query: 554 QDAQRVHGLMEAQGFAASERLKVALISSQT 583
           Q+A+     ++ QG   + +  + L+S+  
Sbjct: 399 QEAEAAFQELKQQGMRPTMKSHMLLLSAHA 428



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 66/146 (45%), Gaps = 12/146 (8%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKM----NENGIVPDIVTSTVLVHMYS 303
           L  ++F  N      +++A+ +   L+D ER+   M      +   PD  T  VLV+ Y 
Sbjct: 448 LRPDTFALNA-----MLNAYGRAGRLDDMERLFAAMERGDGASAGAPDTSTYNVLVNAYG 502

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363
           +AG LDR + AF SL + G   D   + S I AY    +    + + + M+ +G      
Sbjct: 503 RAGYLDRMEAAFRSLAARGLAADVVTWTSRIGAYARKKEYGQCLRVFEEMVDAGCYPDAG 562

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMR 389
               LL   A C D R   Q+T I+R
Sbjct: 563 TAKVLL---AACSDERQVEQVTAIVR 585



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/213 (20%), Positives = 94/213 (44%), Gaps = 16/213 (7%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+DA  +    ++AE   +++ + G+ P + +  +L+  ++++GN+ R +E    L 
Sbjct: 385 YNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQLH 444

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDM-MITSGIERSE---------EIYLALL 369
             G +PD    N+M+ AY  AG+      L DM  + + +ER +           Y  L+
Sbjct: 445 KSGLRPDTFALNAMLNAYGRAGR------LDDMERLFAAMERGDGASAGAPDTSTYNVLV 498

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
            ++ + G +         +        + + T  + AY +  +  Q    F+ M+  G  
Sbjct: 499 NAYGRAGYLDRMEAAFRSLAARGLAADVVTWTSRIGAYARKKEYGQCLRVFEEMVDAGCY 558

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           PD      ++AA   +  +++   ++  + KD 
Sbjct: 559 PDAGTAKVLLAACSDERQVEQVTAIVRSMHKDA 591


>gi|224133034|ref|XP_002327945.1| predicted protein [Populus trichocarpa]
 gi|222837354|gb|EEE75733.1| predicted protein [Populus trichocarpa]
          Length = 1450

 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 161/362 (44%), Gaps = 36/362 (9%)

Query: 190 KCKLITDKILSLEKEEDPSPLLAEWKELLQPSRI-------------------DWINL-- 228
           + K  TD+IL L++++  + +L + K  + P+                     +W+NL  
Sbjct: 157 RVKYFTDRILGLKQDQFVADVLDDRKVQMTPTDFCFVVKSVGQESWHRAFEVYEWLNLRH 216

Query: 229 ------------LDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
                       L  L + N Q    V     +E S +  V+ Y+ ++  +A+       
Sbjct: 217 WYSPNARMLSTILAVLGKAN-QEPLAVEVFTRAEPSVENTVKVYNAMMGVYARSGKFNKV 275

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNL--DRAKEAFESLRSHGFQPDKKVYNSMI 334
           + +   M E G  PD+V+   L++   KAG +  + A E    +R  G +PD   YN++I
Sbjct: 276 QELFDLMRERGCEPDLVSFNTLINARLKAGEMTPNLAIELLTEVRRSGLRPDIITYNTLI 335

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
            A   A   +  +++ D M+    E     Y A++  + +CG    A Q+ N +    F 
Sbjct: 336 SACSRASNLEEAVNVFDDMVAHHCEPDLWTYNAMISVYGRCGLSGKAEQLFNDLESRGFF 395

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P   S    + A+ + G+ ++ +   + M+++G   D+    +MI  YGK+   D AL L
Sbjct: 396 PDAVSYNSFLYAFAREGNVEKVKDICEEMVKIGFGKDEMTYNTMIHMYGKQGQNDLALQL 455

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
             +++  G  P   TYTVL+D LG+   I EA  ++ ++   G  P  +   +L   YA+
Sbjct: 456 YRDMKSSGRNPDVITYTVLIDSLGKTNKIEEAAGMMSEMLNTGVKPTLRTYSALICGYAK 515

Query: 515 AG 516
           AG
Sbjct: 516 AG 517



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 118/259 (45%), Gaps = 2/259 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +I  + +      AE++   +   G  PD V+    ++ +++ GN+++ K+  E + 
Sbjct: 366 YNAMISVYGRCGLSGKAEQLFNDLESRGFFPDAVSYNSFLYAFAREGNVEKVKDICEEMV 425

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             GF  D+  YN+MI  Y   GQ  L + L   M +SG       Y  L+ S  +   + 
Sbjct: 426 KIGFGKDEMTYNTMIHMYGKQGQNDLALQLYRDMKSSGRNPDVITYTVLIDSLGKTNKIE 485

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  + + M     +PTL + + L+  Y +AG P +A   FD M+R G +PD    + M+
Sbjct: 486 EAAGMMSEMLNTGVKPTLRTYSALICGYAKAGKPVEAEETFDCMLRSGTRPDQLAYSVML 545

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             + + N   +A+    E+  DG  P  + Y +++  LG    + +  +++  + E+   
Sbjct: 546 DIHLRFNEPKRAMTFYKEMIHDGIMPEHSLYELMLRTLGNANKVEDIGRVVRDMEEVCGM 605

Query: 500 PPFKIQVSLC--DMYARAG 516
            P  I   L   D Y  A 
Sbjct: 606 NPQAISYILVKGDCYDEAA 624



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 68/133 (51%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ LID+  K N +E+A  ++ +M   G+ P + T + L+  Y+KAG    A+E F
Sbjct: 467 DVITYTVLIDSLGKTNKIEEAAGMMSEMLNTGVKPTLRTYSALICGYAKAGKPVEAEETF 526

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + +   G +PD+  Y+ M+  ++   +PK  M+    MI  GI     +Y  +LR+    
Sbjct: 527 DCMLRSGTRPDQLAYSVMLDIHLRFNEPKRAMTFYKEMIHDGIMPEHSLYELMLRTLGNA 586

Query: 376 GDVRGAGQITNIM 388
             V   G++   M
Sbjct: 587 NKVEDIGRVVRDM 599



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/323 (18%), Positives = 137/323 (42%)

Query: 245  ELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK 304
            +L  ++ +   N+  Y  +I+A+ +    + AE +   M ++ I  +      L+  Y+ 
Sbjct: 768  DLTETDGTVLNNISVYVDVIEAYGRLKLWQKAESVAGNMRQSCITVNRKVWNALIEAYAA 827

Query: 305  AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
            +G  +RA+  F ++   G  P     N ++ A +  G+ +    +V  +   G + S+  
Sbjct: 828  SGCYERARAVFNTMMKDGPSPTVDSINGLLQALIVDGRLEELYVVVQELQDIGFKISKSS 887

Query: 365  YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
             L +L +FA+ G++    +I + M+   + P++    ++ +   +        +    M 
Sbjct: 888  ILLMLDAFARAGNIFEVKKIYHGMKAAGYFPSMHLYRVMAQLLCRGKQVRDVEAMLSEME 947

Query: 425  RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
              G KPD     S++  Y   +   K   +   +++DG EP   TY +L+    R     
Sbjct: 948  EAGFKPDLSIWNSVLKMYVAIDDFRKTTQIYQRIKEDGLEPDEDTYNILIVMYCRDHRPK 1007

Query: 485  EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERII 544
            E   L+ ++  +G  P      SL   + +  + ++A +    L++   ++    +  ++
Sbjct: 1008 EGLVLMDEMRTVGLEPKLDTYKSLVASFGKQQLVEQAEELFEELQSTGCKLDRSFYHIMM 1067

Query: 545  NGLLAGGFLQDAQRVHGLMEAQG 567
                  G    AQR+  +M+ +G
Sbjct: 1068 KIYRNSGSHSKAQRLFSMMKDEG 1090



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/310 (21%), Positives = 128/310 (41%), Gaps = 46/310 (14%)

Query: 195  TDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQ 254
             + +LS  +E    P L+ W  +L+         +D  R + TQ+Y ++      E+  +
Sbjct: 939  VEAMLSEMEEAGFKPDLSIWNSVLK-----MYVAIDDFR-KTTQIYQRI-----KEDGLE 987

Query: 255  TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA 314
             +   Y+ LI  + +++  ++   ++ +M   G+ P + T   LV  + K   +++A+E 
Sbjct: 988  PDEDTYNILIVMYCRDHRPKEGLVLMDEMRTVGLEPKLDTYKSLVASFGKQQLVEQAEEL 1047

Query: 315  FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
            FE L+S G + D+  Y+ M+  Y N+G       L  MM   G+E               
Sbjct: 1048 FEELQSTGCKLDRSFYHIMMKIYRNSGSHSKAQRLFSMMKDEGVE--------------- 1092

Query: 375  CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
                                PT+ +  LL+ +YG +G P +A      +           
Sbjct: 1093 --------------------PTIATMHLLMVSYGSSGQPQEAEKVLSNLKETDANLSTLP 1132

Query: 435  TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
             +S+I AY +    +  +  L +++++G EP    +T  +      Q  +EA  LL  + 
Sbjct: 1133 YSSVIDAYVRNGDYNAGIQKLKQVKEEGLEPDHRIWTCFIRAASLSQHTSEAILLLNALR 1192

Query: 495  ELGEAPPFKI 504
            + G   P ++
Sbjct: 1193 DTGFDLPIRL 1202



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/206 (20%), Positives = 92/206 (44%), Gaps = 1/206 (0%)

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG-IERSEEIYLALL 369
           A + F  +R  G +  + +Y SM++ Y   G P+    L+D+  T G +  +  +Y+ ++
Sbjct: 728 ASQVFSDMRFCGIKASECLYQSMMLLYCKMGFPETAHHLIDLTETDGTVLNNISVYVDVI 787

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
            ++ +    + A  +   MR        +    L+EAY  +G  ++AR+ F+ M++ G  
Sbjct: 788 EAYGRLKLWQKAESVAGNMRQSCITVNRKVWNALIEAYAASGCYERARAVFNTMMKDGPS 847

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           P       ++ A      L++   ++ EL+  GF+   ++  +++D   R   I E +++
Sbjct: 848 PTVDSINGLLQALIVDGRLEELYVVVQELQDIGFKISKSSILLMLDAFARAGNIFEVKKI 907

Query: 490 LGKISELGEAPPFKIQVSLCDMYARA 515
              +   G  P   +   +  +  R 
Sbjct: 908 YHGMKAAGYFPSMHLYRVMAQLLCRG 933


>gi|359490016|ref|XP_002275236.2| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
           chloroplastic-like [Vitis vinifera]
          Length = 1442

 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 137/287 (47%), Gaps = 9/287 (3%)

Query: 218 LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           +QP  I +  L+    RE N +   KV   +++    Q ++  Y+ +I  + +     +A
Sbjct: 290 IQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRC-QPDLWTYNAMISVYGRCGMSREA 348

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
            R+ K +   G +PD VT   L++ +++ GN+D+ KE  E +   GF  D+  YN++I  
Sbjct: 349 GRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHM 408

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           Y   GQ  L   L   M  SG       Y  L+ S  +   ++ A ++ + M     +PT
Sbjct: 409 YGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNARVKPT 468

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           L + + L+  Y +AG   +A   FD M+R G KPD    + M+    + N   KA+ L  
Sbjct: 469 LRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLYQ 528

Query: 457 ELEKDGFEPGPATYTVLVDWLGR-------LQLINEAEQLLGKISEL 496
           E+    F+P  A Y V++  LG+        +++ + E+L G  S++
Sbjct: 529 EMVLHSFKPDHALYEVMLRVLGKENREEDVHKVVKDMEELCGMNSQV 575



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 85/362 (23%), Positives = 161/362 (44%), Gaps = 36/362 (9%)

Query: 190 KCKLITDKILSLEKEEDPSPLLAEWKELLQPSRI-------------------DWINL-- 228
           + + +TD+IL L+ EE  + +L + K  + P+                     +W+NL  
Sbjct: 123 RVQFLTDRILGLKSEEFVADVLDDRKVQMTPTDFCFVVKWVGQSSWQRALEVYEWLNLRH 182

Query: 229 ------------LDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
                       L  L + N Q    V     +E +    V+ Y+ ++  +A+       
Sbjct: 183 WYSPNARMLATILSVLGKAN-QEALAVEIFARAEAASGNTVQVYNAMMGVYARTGRFTKV 241

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNL--DRAKEAFESLRSHGFQPDKKVYNSMI 334
           + +L  M   G  PD+V+   L++   K+G +  + A E    +R  G QPD   YN++I
Sbjct: 242 QELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRSGIQPDIITYNTLI 301

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
            A       +  + + + M+    +     Y A++  + +CG  R AG++   +  + F 
Sbjct: 302 SACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFL 361

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P   +   L+ A+ + G+ D+ +   + M+++G   D+    ++I  YGK+   D A  L
Sbjct: 362 PDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAFQL 421

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
             +++  G  P   TYTVL+D LG+  +I EA +++ ++      P  +   +L   YA+
Sbjct: 422 YSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNARVKPTLRTFSALICGYAK 481

Query: 515 AG 516
           AG
Sbjct: 482 AG 483



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 114/255 (44%), Gaps = 2/255 (0%)

Query: 238  QLYFKVAELV--LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTS 295
            +L+ K   LV  L ++    + + ++ LI A+A   C E A  I   M  +G  P + + 
Sbjct: 761  KLWQKAESLVGSLRQKCTMVDRKVWNALIHAYAASGCYERARAIFNTMMRDGPSPTVDSV 820

Query: 296  TVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMIT 355
              L+      G LD      + L+  GF+  K     M+ A+ +AG       +   M  
Sbjct: 821  NGLMQALIVDGRLDELYVVIQELQDMGFKISKSSITLMLDAFAHAGNIFEVKKIYQGMKA 880

Query: 356  SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ 415
            +G   +  +Y  ++   A+   VR    + + M +  F+P L     +++ Y   GD  +
Sbjct: 881  AGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEMEVARFKPDLSIWNSVLKLYTGIGDFKK 940

Query: 416  ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
                +  +   G KPD+    ++I  Y +    ++ L+L+ E+ + G EP   TY  L+ 
Sbjct: 941  TGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTYKSLIS 1000

Query: 476  WLGRLQLINEAEQLL 490
              G+LQ++ +AE+L 
Sbjct: 1001 AFGKLQMVEQAEELF 1015



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 124/280 (44%), Gaps = 35/280 (12%)

Query: 260  YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
            Y  +I   AK   + D E ++ +M      PD+     ++ +Y+  G+  +  + ++ ++
Sbjct: 890  YRIMIGLLAKGKRVRDVEAMVSEMEVARFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQ 949

Query: 320  SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG--------------------IE 359
              G +PD+  YN++I+ Y    +P+ G+SL+  M   G                    +E
Sbjct: 950  EAGLKPDEDTYNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTYKSLISAFGKLQMVE 1009

Query: 360  RSEEIYLALL---------------RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
            ++EE++  LL               + F   G+   A ++  +M+    +PT+ +  LL+
Sbjct: 1010 QAEELFEGLLSKECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLM 1069

Query: 405  EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
             +Y  +G P++A    D +   G        +S+I AY K    + A+  L+E++KDG E
Sbjct: 1070 VSYSGSGQPEEAEKVLDNLKVEGLPLSTLPYSSVIDAYLKNGDHNVAIQKLMEMKKDGLE 1129

Query: 465  PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKI 504
            P    +T  V      Q  +EA  LL  + + G   P ++
Sbjct: 1130 PDHRIWTCFVRAASLSQHTSEAIVLLKALRDTGFDLPIRL 1169



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 92/210 (43%), Gaps = 20/210 (9%)

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A + F  +R +G +P   +Y SM++ Y   G P+    L+D        ++EE  L    
Sbjct: 695 ASQIFSDMRFYGVEPSDHLYRSMVVTYCKMGFPETAHYLID--------QAEEKGLLFDD 746

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTL-ESCTL--------LVEAYGQAGDPDQARSNFD 421
                G +   G++    + E    +L + CT+        L+ AY  +G  ++AR+ F+
Sbjct: 747 VSIHTGVIEAYGKLKLWQKAESLVGSLRQKCTMVDRKVWNALIHAYAASGCYERARAIFN 806

Query: 422 YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ 481
            M+R G  P       ++ A      LD+   ++ EL+  GF+   ++ T+++D      
Sbjct: 807 TMMRDGPSPTVDSVNGLMQALIVDGRLDELYVVIQELQDMGFKISKSSITLMLDAFAHAG 866

Query: 482 LINEAEQLLGKISELGEAPP---FKIQVSL 508
            I E +++   +   G  P    ++I + L
Sbjct: 867 NIFEVKKIYQGMKAAGYFPTMHLYRIMIGL 896


>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 676

 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/361 (26%), Positives = 164/361 (45%), Gaps = 29/361 (8%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E     +V  Y+ LI    K   L+ A R+L  MNENG+VPD  T +V +    K G ++
Sbjct: 207 ESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIE 266

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A   F SL+  G + ++ +Y ++I  Y  AG+     SL+D M+T     +   Y AL+
Sbjct: 267 EANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALI 326

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               +   V+ A  +   M  +  + T+ + T+L+ A  + GD D A    D M+  G++
Sbjct: 327 DGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQ 386

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     + I A+  +  + +A +++  + + G  P   TYT+++D  G L L+N A  +
Sbjct: 387 PDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAFDV 446

Query: 490 LGKISELGEAPPFKI------------------QVSLCD-----MYARAGIEKKALQ--- 523
           L ++ + G  P                       V+LCD      +A      K ++   
Sbjct: 447 LKRMFDTGCDPSHHTYSCLIKHLLKEELTKKYKNVALCDSIPNVFFADVADVWKMMKFET 506

Query: 524 ALGFLEAKKEQ-MGP--DDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
           AL   E   E    P  + + ++I GL   G L  AQ++   M  +G + SE +  +L++
Sbjct: 507 ALELFEKMLEHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYNSLLN 566

Query: 581 S 581
            
Sbjct: 567 C 567



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 143/312 (45%), Gaps = 24/312 (7%)

Query: 203 KEEDPSPLLAEWKELLQP-----SRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNV 257
           +E+D  P +  +  ++        R++ INL   +RE+  +                 N+
Sbjct: 66  REDDCYPTVRTYTVIVHALFESGRRMEAINLFSEMRERGCE----------------PNI 109

Query: 258 RDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFES 317
             Y+ +I+A  KE  LE+  RIL +M E G+VP + T   L+  Y K G ++ A+E  + 
Sbjct: 110 HTYTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDL 169

Query: 318 LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
           + S+   P+++ YN +I  +         M+L+  M+ S +  S   Y +L+    + G 
Sbjct: 170 MHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGY 229

Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
           +  A ++ N+M      P   + ++ ++   + G  ++A   F+ +   G K ++    +
Sbjct: 230 LDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTA 289

Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           +I  Y K   +D A +LL  +  +   P  +TY  L+D L + + + EA  L+  + + G
Sbjct: 290 LIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKG 349

Query: 498 ---EAPPFKIQV 506
                P + I +
Sbjct: 350 LKCTVPTYTILI 361



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 94/390 (24%), Positives = 155/390 (39%), Gaps = 55/390 (14%)

Query: 203 KEEDPSPLLAEW-KELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEES-----FQTN 256
           K +D + LL     E   P+   +  L+D L ++      KV E +L  ES      +  
Sbjct: 299 KMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKER-----KVQEALLLMESMIQKGLKCT 353

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           V  Y+ LI A  KE   + A RIL +M  +G  PD+   T  +H +   GN+  A++   
Sbjct: 354 VPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMS 413

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR------ 370
            +   G  PD   Y  +I AY   G       ++  M  +G + S   Y  L++      
Sbjct: 414 MMFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLKEE 473

Query: 371 ------SFAQCGDVRGA--GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
                 + A C  +       + ++ ++ +F+  LE                     F+ 
Sbjct: 474 LTKKYKNVALCDSIPNVFFADVADVWKMMKFETALEL--------------------FEK 513

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
           M+  G  P+    A +I    K   L  A  L   + + G  P  A Y  L++    L +
Sbjct: 514 MLEHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYNSLLNCCCELGI 573

Query: 483 INEAEQLLGKISELGEAPPFK-IQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD-- 539
             +A +L+G + E G  P  + + V  C +Y     EK  +     L     Q G +D  
Sbjct: 574 YGDAVRLVGAMMEHGHLPLLESLNVLFCGLYEEGSKEKAKVVFSNLL-----QCGYNDDE 628

Query: 540 --FERIINGLLAGGFLQDAQRVHGLMEAQG 567
             ++ +I+GLL  G       + G+MEA+G
Sbjct: 629 VAWKILIDGLLKNGLSDGCSELLGVMEARG 658



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 125/290 (43%), Gaps = 1/290 (0%)

Query: 227 NLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNEN 286
           NL++     +    F V  + + ++  + N   Y+ LI    +   +++   I KKM E+
Sbjct: 10  NLVEANLNNDVNSAFSVFNM-MPKKGCRRNEVSYTNLIHGLCEVGRVDEGINIFKKMRED 68

Query: 287 GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLG 346
              P + T TV+VH   ++G    A   F  +R  G +P+   Y  MI A     + + G
Sbjct: 69  DCYPTVRTYTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEG 128

Query: 347 MSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA 406
             ++D M+  G+  S   Y AL+  + + G V  A +I ++M      P   +   L+  
Sbjct: 129 RRILDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICG 188

Query: 407 YGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG 466
           + +  +  +A +    M+     P      S+I    K   LD A  LL  + ++G  P 
Sbjct: 189 FCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPD 248

Query: 467 PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
             TY+V +D L +   I EA  L   + E G      I  +L D Y +AG
Sbjct: 249 QWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAG 298



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 98/247 (39%), Gaps = 29/247 (11%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLV-HMYS--------------- 303
           Y+ +IDA+     L  A  +LK+M + G  P   T + L+ H+                 
Sbjct: 427 YTLVIDAYGGLGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLKEELTKKYKNVALCDS 486

Query: 304 -------------KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV 350
                        K    + A E FE +  HG  P+   Y  +I+     G+  +   L 
Sbjct: 487 IPNVFFADVADVWKMMKFETALELFEKMLEHGCSPNINTYAKLIIGLCKVGRLGVAQKLF 546

Query: 351 DMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410
           D M   G+  SE IY +LL    + G    A ++   M      P LES  +L     + 
Sbjct: 547 DHMNERGVSPSEAIYNSLLNCCCELGIYGDAVRLVGAMMEHGHLPLLESLNVLFCGLYEE 606

Query: 411 GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATY 470
           G  ++A+  F  +++ G+  D+     +I    K  L D    LL  +E  G +  P TY
Sbjct: 607 GSKEKAKVVFSNLLQCGYNDDEVAWKILIDGLLKNGLSDGCSELLGVMEARGCQIHPQTY 666

Query: 471 TVLVDWL 477
            +L++ L
Sbjct: 667 RMLIEGL 673


>gi|147778634|emb|CAN76112.1| hypothetical protein VITISV_005527 [Vitis vinifera]
          Length = 1494

 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 137/287 (47%), Gaps = 9/287 (3%)

Query: 218 LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           +QP  I +  L+    RE N +   KV   +++    Q ++  Y+ +I  + +     +A
Sbjct: 322 IQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRC-QPDLWTYNAMISVYGRCGMSREA 380

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
            R+ K +   G +PD VT   L++ +++ GN+D+ KE  E +   GF  D+  YN++I  
Sbjct: 381 GRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHM 440

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           Y   GQ  L   L   M  SG       Y  L+ S  +   ++ A ++ + M     +PT
Sbjct: 441 YGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNAXVKPT 500

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           L + + L+  Y +AG   +A   FD M+R G KPD    + M+    + N   KA+ L  
Sbjct: 501 LRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLYQ 560

Query: 457 ELEKDGFEPGPATYTVLVDWLGR-------LQLINEAEQLLGKISEL 496
           E+    F+P  A Y V++  LG+        +++ + E+L G  S++
Sbjct: 561 EMVLHSFKPDHALYEVMLRVLGKENREEDVHKVVKDMEELCGMNSQV 607



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 85/362 (23%), Positives = 161/362 (44%), Gaps = 36/362 (9%)

Query: 190 KCKLITDKILSLEKEEDPSPLLAEWKELLQPSRI-------------------DWINL-- 228
           + + +TD+IL L+ EE  + +L + K  + P+                     +W+NL  
Sbjct: 155 RVQFLTDRILGLKSEEFVADVLDDRKVQMTPTDFCFVVKWVGQSSWQRALEVYEWLNLRH 214

Query: 229 ------------LDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
                       L  L + N Q    V     +E +    V+ Y+ ++  +A+       
Sbjct: 215 WYSPNARMLATILSVLGKAN-QEALAVEIFARAEAAXGNTVQVYNAMMGVYARTGRFTKV 273

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNL--DRAKEAFESLRSHGFQPDKKVYNSMI 334
           + +L  M   G  PD+V+   L++   K+G +  + A E    +R  G QPD   YN++I
Sbjct: 274 QELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRSGIQPDIITYNTLI 333

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
            A       +  + + + M+    +     Y A++  + +CG  R AG++   +  + F 
Sbjct: 334 SACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFL 393

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P   +   L+ A+ + G+ D+ +   + M+++G   D+    ++I  YGK+   D A  L
Sbjct: 394 PDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAFQL 453

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
             +++  G  P   TYTVL+D LG+  +I EA +++ ++      P  +   +L   YA+
Sbjct: 454 YSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNAXVKPTLRTFSALICGYAK 513

Query: 515 AG 516
           AG
Sbjct: 514 AG 515



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 125/280 (44%), Gaps = 35/280 (12%)

Query: 260  YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
            Y  +I   AK   + D E ++ +M      PD+     ++ +Y+  G+  +  + ++ ++
Sbjct: 922  YRIMIGLLAKGKRVRDVEAMVSEMEVAXFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQ 981

Query: 320  SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG--------------------IE 359
              G +PD+  YN++I+ Y    +P+ G+SL+  M   G                    +E
Sbjct: 982  EAGLKPDEDTYNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTYKSLISAFGKLQMVE 1041

Query: 360  RSEEIYLALL-------RSFAQ--------CGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
            ++EE++  LL       RSF           G+   A ++  +M+    +PT+ +  LL+
Sbjct: 1042 QAEELFEGLLSKECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLM 1101

Query: 405  EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
             +Y  +G P++A    D +   G        +S+I AY K    + A+  L+E++KDG E
Sbjct: 1102 VSYSGSGQPEEAEKVLDNLKVEGLPLSTLPYSSVIDAYLKNGDHNVAIQKLMEMKKDGLE 1161

Query: 465  PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKI 504
            P    +T  V      Q  +EA  LL  + + G   P ++
Sbjct: 1162 PDHRIWTCFVRAASLSQHTSEAIVLLKALRDTGFDLPIRL 1201



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 114/255 (44%), Gaps = 2/255 (0%)

Query: 238  QLYFKVAELV--LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTS 295
            +L+ K   LV  L ++    + + ++ LI A+A   C E A  I   M  +G  P + + 
Sbjct: 793  KLWQKAESLVGSLRQKCTMVDRKVWNALIHAYAASGCYERARAIFNTMMRDGPSPTVDSV 852

Query: 296  TVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMIT 355
              L+      G LD      + L+  GF+  K     M+ A+ +AG       +   M  
Sbjct: 853  NGLMQALIVDGRLDELYVVIQELQDMGFKISKSSITLMLDAFAHAGNIFEVKKIYQGMKA 912

Query: 356  SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ 415
            +G   +  +Y  ++   A+   VR    + + M +  F+P L     +++ Y   GD  +
Sbjct: 913  AGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEMEVAXFKPDLSIWNSVLKLYTGIGDFKK 972

Query: 416  ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
                +  +   G KPD+    ++I  Y +    ++ L+L+ E+ + G EP   TY  L+ 
Sbjct: 973  TGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTYKSLIS 1032

Query: 476  WLGRLQLINEAEQLL 490
              G+LQ++ +AE+L 
Sbjct: 1033 AFGKLQMVEQAEELF 1047



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 92/210 (43%), Gaps = 20/210 (9%)

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A + F  +R +G +P   +Y SM++ Y   G P+    L+D        ++EE  L    
Sbjct: 727 ASQIFSDMRFYGVEPSDHLYRSMVVTYCKMGFPETAHYLID--------QAEEKGLLFDD 778

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTL-ESCTL--------LVEAYGQAGDPDQARSNFD 421
                G +   G++    + E    +L + CT+        L+ AY  +G  ++AR+ F+
Sbjct: 779 VSIHTGVIEAYGKLKLWQKAESLVGSLRQKCTMVDRKVWNALIHAYAASGCYERARAIFN 838

Query: 422 YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ 481
            M+R G  P       ++ A      LD+   ++ EL+  GF+   ++ T+++D      
Sbjct: 839 TMMRDGPSPTVDSVNGLMQALIVDGRLDELYVVIQELQDMGFKISKSSITLMLDAFAHAG 898

Query: 482 LINEAEQLLGKISELGEAPP---FKIQVSL 508
            I E +++   +   G  P    ++I + L
Sbjct: 899 NIFEVKKIYQGMKAAGYFPTMHLYRIMIGL 928


>gi|168055632|ref|XP_001779828.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668740|gb|EDQ55341.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 730

 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 153/357 (42%), Gaps = 20/357 (5%)

Query: 203 KEEDPSPLLAEWK---ELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRD 259
           KE  P P L  +    +L       W N+L+   E   Q               Q +   
Sbjct: 144 KEAGPQPSLVTYNVIIDLYGKKGRSWENILELFEEMKAQ-------------GIQPDEYT 190

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+  I A A  +  E+A  +  +M  +   PD VT   L+ +Y KAG  + A    + + 
Sbjct: 191 YNTAITACASGSLCEEATELFTQMKSSNCTPDRVTYNALLDVYGKAGWYNEAANVLKEME 250

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           S G  P+   YN ++ A+  AG       + D M++ GIE     Y +LL ++++ G V 
Sbjct: 251 SAGCLPNIVTYNELLSAFGRAGLCNAAAEMKDSMVSKGIEPDVFTYTSLLSAYSRAGKVE 310

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A +I N MR     P   +   L+  +G+  +  +    F+ M   G +PD     S++
Sbjct: 311 QAMEIYNQMRTSNCTPNSFTFNALIGMHGKNKNFSEMMVIFEDMQACGVEPDIVTWNSLL 370

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            A+GK  +  + L +   ++K GFEP  AT+ +L++  GR    ++A  +   + + G  
Sbjct: 371 GAFGKNGMYSEVLKVFRGMKKAGFEPDKATFNILIEAYGRCGSSDQALSIYDGMLQAGCT 430

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQ 554
           P      +L    AR G  + A   L   E  +    P+D  +  +++    GG L+
Sbjct: 431 PDLATFNTLLAALAREGRWEHAELILD--ELNRSSYKPNDIAYASMLHAYANGGELE 485



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 91/392 (23%), Positives = 147/392 (37%), Gaps = 49/392 (12%)

Query: 218 LQPSRIDWINLLDRLR-----EQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC 272
           ++P    + +LL         EQ  ++Y ++     +  SF  N      LI  H K   
Sbjct: 289 IEPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFNA-----LIGMHGKNKN 343

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
             +   I + M   G+ PDIVT   L+  + K G      + F  ++  GF+PDK  +N 
Sbjct: 344 FSEMMVIFEDMQACGVEPDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATFNI 403

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I AY   G     +S+ D M+ +G       +  LL + A+ G    A  I + +    
Sbjct: 404 LIEAYGRCGSSDQALSIYDGMLQAGCTPDLATFNTLLAALAREGRWEHAELILDELNRSS 463

Query: 393 FQPTLESCTLLVEAYGQAGD-----------------------------------PDQAR 417
           ++P   +   ++ AY   G+                                    D+A 
Sbjct: 464 YKPNDIAYASMLHAYANGGELEKLKEMVDTLHTIYVPFTKILLKTFVLVYSKCSLVDEAE 523

Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
             F  M   G+  D     +MI+ YGKK ++DKA +    L   G EP   TY  L+   
Sbjct: 524 DAFLAMRHHGYLSDTSTFNAMISMYGKKGMMDKATDTFALLRSTGLEPDVVTYNCLMGMY 583

Query: 478 GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP 537
           GR  +  + E  L +    G+ P      ++   Y++ G    A +   F E     + P
Sbjct: 584 GREGMYRKCEATLRECMAAGQTPDLVSYNTVIFSYSKHGQLSSATRI--FHEMVSNGIQP 641

Query: 538 DDF--ERIINGLLAGGFLQDAQRVHGLMEAQG 567
           D F     +   + GG   +A  V   M   G
Sbjct: 642 DSFTYNTFVGCYVNGGMFPEALSVVKHMHKTG 673



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 79/335 (23%), Positives = 141/335 (42%), Gaps = 17/335 (5%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG- 306
           L EE +  +V  Y+ LI A ++    ++A    ++M E G  P +VT  V++ +Y K G 
Sbjct: 108 LREEGYPLDVYAYTSLISALSRNRKFKEALGFFEQMKEAGPQPSLVTYNVIIDLYGKKGR 167

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           + +   E FE +++ G QPD+  YN+ I A  +    +    L   M +S        Y 
Sbjct: 168 SWENILELFEEMKAQGIQPDEYTYNTAITACASGSLCEEATELFTQMKSSNCTPDRVTYN 227

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           ALL  + + G    A  +   M      P + +   L+ A+G+AG  + A    D M+  
Sbjct: 228 ALLDVYGKAGWYNEAANVLKEMESAGCLPNIVTYNELLSAFGRAGLCNAAAEMKDSMVSK 287

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G +PD     S+++AY +   +++A+ +  ++      P   T+  L+   G+ +  +E 
Sbjct: 288 GIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFNALIGMHGKNKNFSEM 347

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL------GF----------LEA 530
             +   +   G  P      SL   + + G+  + L+        GF          +EA
Sbjct: 348 MVIFEDMQACGVEPDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATFNILIEA 407

Query: 531 KKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEA 565
                  D    I +G+L  G   D    + L+ A
Sbjct: 408 YGRCGSSDQALSIYDGMLQAGCTPDLATFNTLLAA 442



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 92/415 (22%), Positives = 159/415 (38%), Gaps = 109/415 (26%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+D + K     +A  +LK+M   G +P+IVT   L+  + +AG  + A E  +S+ 
Sbjct: 226 YNALLDVYGKAGWYNEAANVLKEMESAGCLPNIVTYNELLSAFGRAGLCNAAAEMKDSMV 285

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL------RSFA 373
           S G +PD   Y S++ AY  AG+ +  M + + M TS    +   + AL+      ++F+
Sbjct: 286 SKGIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFNALIGMHGKNKNFS 345

Query: 374 Q----------CG---------DVRGA----GQITNIMRI------EEFQPTLESCTLLV 404
           +          CG          + GA    G  + ++++        F+P   +  +L+
Sbjct: 346 EMMVIFEDMQACGVEPDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATFNILI 405

Query: 405 EAYGQAGDPDQARSNFDYMIRLG-----------------------------------HK 429
           EAYG+ G  DQA S +D M++ G                                   +K
Sbjct: 406 EAYGRCGSSDQALSIYDGMLQAGCTPDLATFNTLLAALAREGRWEHAELILDELNRSSYK 465

Query: 430 PDDRCTASMIAAYG-----------------------------------KKNLLDKALNL 454
           P+D   ASM+ AY                                    K +L+D+A + 
Sbjct: 466 PNDIAYASMLHAYANGGELEKLKEMVDTLHTIYVPFTKILLKTFVLVYSKCSLVDEAEDA 525

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
            L +   G+    +T+  ++   G+  ++++A      +   G  P       L  MY R
Sbjct: 526 FLAMRHHGYLSDTSTFNAMISMYGKKGMMDKATDTFALLRSTGLEPDVVTYNCLMGMYGR 585

Query: 515 AGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQG 567
            G+ +K    L   E       PD   +  +I      G L  A R+   M + G
Sbjct: 586 EGMYRKCEATL--RECMAAGQTPDLVSYNTVIFSYSKHGQLSSATRIFHEMVSNG 638



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 62/130 (47%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           +L     + +V  Y+ L+  + +E      E  L++    G  PD+V+   ++  YSK G
Sbjct: 563 LLRSTGLEPDVVTYNCLMGMYGREGMYRKCEATLRECMAAGQTPDLVSYNTVIFSYSKHG 622

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            L  A   F  + S+G QPD   YN+ +  YVN G     +S+V  M  +G +  E  Y 
Sbjct: 623 QLSSATRIFHEMVSNGIQPDSFTYNTFVGCYVNGGMFPEALSVVKHMHKTGCKPDEVTYR 682

Query: 367 ALLRSFAQCG 376
            L+ ++ + G
Sbjct: 683 TLVDAYCKIG 692



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 69/321 (21%), Positives = 123/321 (38%), Gaps = 17/321 (5%)

Query: 268 AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK 327
            +E+ L    R+ K + E G   D+   T L+   S+      A   FE ++  G QP  
Sbjct: 93  GRESQLTTVSRLFKSLREEGYPLDVYAYTSLISALSRNRKFKEALGFFEQMKEAGPQPSL 152

Query: 328 KVYNSMIMAYVNAGQPKLG-MSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITN 386
             YN +I  Y   G+     + L + M   GI+  E  Y   + + A       A ++  
Sbjct: 153 VTYNVIIDLYGKKGRSWENILELFEEMKAQGIQPDEYTYNTAITACASGSLCEEATELFT 212

Query: 387 IMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKN 446
            M+     P   +   L++ YG+AG  ++A +    M   G  P+      +++A+G+  
Sbjct: 213 QMKSSNCTPDRVTYNALLDVYGKAGWYNEAANVLKEMESAGCLPNIVTYNELLSAFGRAG 272

Query: 447 LLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQV 506
           L + A  +   +   G EP   TYT L+    R   + +A ++  ++      P      
Sbjct: 273 LCNAAAEMKDSMVSKGIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFN 332

Query: 507 SLCDMYAR----------------AGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAG 550
           +L  M+ +                 G+E   +     L A  +     +  ++  G+   
Sbjct: 333 ALIGMHGKNKNFSEMMVIFEDMQACGVEPDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKA 392

Query: 551 GFLQDAQRVHGLMEAQGFAAS 571
           GF  D    + L+EA G   S
Sbjct: 393 GFEPDKATFNILIEAYGRCGS 413



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 60/299 (20%), Positives = 110/299 (36%), Gaps = 36/299 (12%)

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL 349
           PD VT  V++ +  +   L      F+SLR  G+  D   Y S+I A     + K  +  
Sbjct: 80  PDGVTIAVMLRILGRESQLTTVSRLFKSLREEGYPLDVYAYTSLISALSRNRKFKEALGF 139

Query: 350 VDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409
            + M  +G                                    QP+L +  ++++ YG+
Sbjct: 140 FEQMKEAGP-----------------------------------QPSLVTYNVIIDLYGK 164

Query: 410 AGDP-DQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPA 468
            G   +     F+ M   G +PD+    + I A    +L ++A  L  +++     P   
Sbjct: 165 KGRSWENILELFEEMKAQGIQPDEYTYNTAITACASGSLCEEATELFTQMKSSNCTPDRV 224

Query: 469 TYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFL 528
           TY  L+D  G+    NEA  +L ++   G  P       L   + RAG+   A +    +
Sbjct: 225 TYNALLDVYGKAGWYNEAANVLKEMESAGCLPNIVTYNELLSAFGRAGLCNAAAEMKDSM 284

Query: 529 EAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQ 587
            +K  +     +  +++     G ++ A  ++  M       +     ALI     N+ 
Sbjct: 285 VSKGIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFNALIGMHGKNKN 343


>gi|297800058|ref|XP_002867913.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297313749|gb|EFH44172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 724

 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 149/319 (46%), Gaps = 5/319 (1%)

Query: 214 WKELLQPSRIDWINLLDRLREQN-TQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC 272
           WK    P+      L+D L ++  T+  F++   ++  + ++ NV  Y+ +I  + KE+ 
Sbjct: 341 WK----PNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDIYKPNVHTYTSMIGGYCKEDK 396

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           L  AE +  +M E G+ P++ T T L++ + KAGN DRA E    +   GF+P+   YN+
Sbjct: 397 LNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGNFDRAYELMNLMDDEGFRPNIYTYNA 456

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I +     +      L++   + G+E     Y  L++   +  D++ A      M    
Sbjct: 457 VIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQSDIKQALAFFCRMNKTG 516

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
           F+  +    +L+ A+ +     ++   F  ++ LG  P      SMI+ Y K+   D AL
Sbjct: 517 FEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLVPTKETYTSMISGYCKEGDFDLAL 576

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
                +++ G  P   TY  L+  L +  +++EA +L   + + G +PP   +V+L   Y
Sbjct: 577 KYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPPEVTRVTLAYEY 636

Query: 513 ARAGIEKKALQALGFLEAK 531
            +      A+  L  L+ K
Sbjct: 637 CKRNDSASAMIVLEPLDKK 655



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 133/323 (41%), Gaps = 45/323 (13%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           L +A  ++  M   G+ P  +T   ++ +  ++G +D A+  F+ +   G  PD   +  
Sbjct: 186 LNEAVGMVMDMQNQGLSPSSITMNCVLEIAIESGLIDYAENVFDEMSVRGVCPDSSSFKL 245

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           M++     G+ +     +  MI  G                                   
Sbjct: 246 MVIGCFRDGKIQEADRWLSGMIQRG----------------------------------- 270

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
           F P   +CTL++ A  + G  ++A   F  MI LG KP+     S+I    KK  + +A 
Sbjct: 271 FIPDNATCTLILSALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAF 330

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI--SELGEAPPFKIQVSLCD 510
            +L E+ ++G++P   T+T L+D L +     +A +L  K+  S++ + P      S+  
Sbjct: 331 EMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDIYK-PNVHTYTSMIG 389

Query: 511 MYARAGIEKKALQALGFLEAKKEQ-MGP--DDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
            Y +   E K  +A       KEQ + P  + +  +ING    G    A  +  LM+ +G
Sbjct: 390 GYCK---EDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGNFDRAYELMNLMDDEG 446

Query: 568 FAASERLKVALISSQTFNRQRQP 590
           F  +     A+I S    + R P
Sbjct: 447 FRPNIYTYNAVIDSLC-KKSRAP 468


>gi|297737369|emb|CBI26570.3| unnamed protein product [Vitis vinifera]
          Length = 1042

 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 137/287 (47%), Gaps = 9/287 (3%)

Query: 218 LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           +QP  I +  L+    RE N +   KV   +++    Q ++  Y+ +I  + +     +A
Sbjct: 265 IQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRC-QPDLWTYNAMISVYGRCGMSREA 323

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
            R+ K +   G +PD VT   L++ +++ GN+D+ KE  E +   GF  D+  YN++I  
Sbjct: 324 GRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHM 383

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           Y   GQ  L   L   M  SG       Y  L+ S  +   ++ A ++ + M     +PT
Sbjct: 384 YGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNARVKPT 443

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           L + + L+  Y +AG   +A   FD M+R G KPD    + M+    + N   KA+ L  
Sbjct: 444 LRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLYQ 503

Query: 457 ELEKDGFEPGPATYTVLVDWLGR-------LQLINEAEQLLGKISEL 496
           E+    F+P  A Y V++  LG+        +++ + E+L G  S++
Sbjct: 504 EMVLHSFKPDHALYEVMLRVLGKENREEDVHKVVKDMEELCGMNSQV 550



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/362 (23%), Positives = 161/362 (44%), Gaps = 36/362 (9%)

Query: 190 KCKLITDKILSLEKEEDPSPLLAEWKELLQPSRI-------------------DWINL-- 228
           + + +TD+IL L+ EE  + +L + K  + P+                     +W+NL  
Sbjct: 98  RVQFLTDRILGLKSEEFVADVLDDRKVQMTPTDFCFVVKWVGQSSWQRALEVYEWLNLRH 157

Query: 229 ------------LDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
                       L  L + N Q    V     +E +    V+ Y+ ++  +A+       
Sbjct: 158 WYSPNARMLATILSVLGKAN-QEALAVEIFARAEAASGNTVQVYNAMMGVYARTGRFTKV 216

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNL--DRAKEAFESLRSHGFQPDKKVYNSMI 334
           + +L  M   G  PD+V+   L++   K+G +  + A E    +R  G QPD   YN++I
Sbjct: 217 QELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRSGIQPDIITYNTLI 276

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
            A       +  + + + M+    +     Y A++  + +CG  R AG++   +  + F 
Sbjct: 277 SACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFL 336

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P   +   L+ A+ + G+ D+ +   + M+++G   D+    ++I  YGK+   D A  L
Sbjct: 337 PDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAFQL 396

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
             +++  G  P   TYTVL+D LG+  +I EA +++ ++      P  +   +L   YA+
Sbjct: 397 YSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNARVKPTLRTFSALICGYAK 456

Query: 515 AG 516
           AG
Sbjct: 457 AG 458



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 80/356 (22%), Positives = 144/356 (40%), Gaps = 42/356 (11%)

Query: 218 LQPSRIDWINLLDRLREQN-----TQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC 272
           ++P  + +  +LD L   N      +LY    E+VL   SF+ +   Y  ++    KEN 
Sbjct: 475 IKPDHLAYSVMLDILLRFNESGKAMKLY---QEMVL--HSFKPDHALYEVMLRVLGKENR 529

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLV--HMYSKAGNLDR-------------------- 310
            ED  +++K M E   +   V  ++LV    +  A N+ R                    
Sbjct: 530 EEDVHKVVKDMEELCGMNSQVICSILVKGECFDHAANMLRLAISQGCELDQYGKARDFGL 589

Query: 311 ---AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
               +E FE L S   + D+  Y+ M+  + N+G       L+ +M  +G+E +      
Sbjct: 590 FCGTEELFEGLLSKECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHL 649

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+ S++  G    A ++ + +++E    +    + +++AY + GD + A      M + G
Sbjct: 650 LMVSYSGSGQPEEAEKVLDNLKVEGLPLSTLPYSSVIDAYLKNGDHNVAIQKLMEMKKDG 709

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            +PD R     + A        +A+ LL  L   GF+      T   D      L++E +
Sbjct: 710 LEPDHRIWTCFVRAASLSQHTSEAIVLLKALRDTGFDLPIRLLTEKSD-----SLVSEVD 764

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERI 543
             L K+  L +   F    +L D+      E +A  +  F  A K  +   D  R+
Sbjct: 765 NCLEKLGPLEDNAAFNFVNALEDLL--WAFELRATASWVFQLAVKRSIYRHDVFRV 818


>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 677

 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 130/274 (47%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E+    +V  Y+ +++   K+  L DA  +  +M E G+VPD  T T L+H + K GN+ 
Sbjct: 388 EQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMG 447

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
           +A   F  +     +PD   YN +I  +    + +    L + MI+  I  +   Y  L+
Sbjct: 448 KALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILV 507

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
             +   G V  A ++ + M  +  +PTL +C  +++ Y ++GD  +A      MI  G  
Sbjct: 508 NGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVG 567

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     ++I  + K   +DKA  L+ ++E  G +P   TY V+++   R   + EAE +
Sbjct: 568 PDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELI 627

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
           L K+ E G  P      +L + Y      K+A +
Sbjct: 628 LRKMIERGIDPDRSTYTTLINGYVSQDNLKEAFR 661



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 137/311 (44%), Gaps = 4/311 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+    + N   +A+ I   M   G+ PD+++ + L+ + S+ G+LD+A   F  ++
Sbjct: 293 YNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMK 352

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G  PD  +Y  +I  Y   G     + + D M+  G       Y  +L    +   + 
Sbjct: 353 TSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLA 412

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  + + M      P   + T L+  + + G+  +A S F  M +   KPD      +I
Sbjct: 413 DANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILI 472

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             + K   ++KA  L  E+      P   +Y +LV+    L  ++EA +L  ++   G  
Sbjct: 473 DGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIK 532

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQDAQ 557
           P      ++   Y R+G   KA + LG  +   E +GPD   +  +ING + G ++  A 
Sbjct: 533 PTLVTCNTVIKGYCRSGDLSKADEFLG--KMISEGVGPDSITYNTLINGFVKGEYMDKAF 590

Query: 558 RVHGLMEAQGF 568
            +   ME +G 
Sbjct: 591 FLINKMETKGL 601



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 129/300 (43%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           ++    + NV   + +++A  K++ ++D +  L  M + GI  DIVT   L++ Y + G 
Sbjct: 176 IARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGL 235

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L  A E   S+   G +P    YN++I      G+      + + M++ G+      Y  
Sbjct: 236 LGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNT 295

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           LL    +  +   A  I + M      P L S + L+    + G  DQA   F  M   G
Sbjct: 296 LLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSG 355

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD+     +I  Y +  ++ +AL +  ++ + G       Y  +++ L + +L+ +A 
Sbjct: 356 LVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADAN 415

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
            L  ++ E G  P F    +L   + + G   KAL   G +  K  +     +  +I+G 
Sbjct: 416 ALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGF 475



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/321 (20%), Positives = 137/321 (42%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           +S LI   ++   L+ A    + M  +G+VPD V  T+L++ Y + G +  A E  + + 
Sbjct: 328 FSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKML 387

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G   D   YN+++             +L D M+  G+      +  L+    + G++ 
Sbjct: 388 EQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMG 447

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  +  IM  +  +P + +  +L++ + +  + ++A   ++ MI     P+    A ++
Sbjct: 448 KALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILV 507

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             Y     + +A  L  E+ + G +P   T   ++    R   +++A++ LGK+   G  
Sbjct: 508 NGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVG 567

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P      +L + + +     KA   +  +E K  Q     +  I+NG    G +Q+A+ +
Sbjct: 568 PDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELI 627

Query: 560 HGLMEAQGFAASERLKVALIS 580
              M  +G          LI+
Sbjct: 628 LRKMIERGIDPDRSTYTTLIN 648



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/219 (21%), Positives = 96/219 (43%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++++++ + ++  Y+ LID   K   +E A  +  +M    I P+ ++  +LV+ Y   G
Sbjct: 455 IMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLG 514

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            +  A   ++ +   G +P     N++I  Y  +G        +  MI+ G+      Y 
Sbjct: 515 FVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYN 574

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+  F +   +  A  + N M  +  QP + +  +++  + + G   +A      MI  
Sbjct: 575 TLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIER 634

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
           G  PD     ++I  Y  ++ L +A     E+ + GF P
Sbjct: 635 GIDPDRSTYTTLINGYVSQDNLKEAFRFHDEMLQRGFVP 673



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 123/311 (39%), Gaps = 30/311 (9%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           +E  E ++   +  G+  D +   +L+  Y +A  L+   + F+ LR  GF       NS
Sbjct: 98  VEIVESLISMSSTCGV--DNLVFDLLIRSYVQARKLNEGTDTFKILRRKGFLVSINACNS 155

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           ++   V  G   L   + + +  SGIE +  +Y   +   A C D           +I++
Sbjct: 156 LLGGLVKMGWVDLAWEVYNEIARSGIELN--VYTLNIMVNALCKD----------HKIDD 203

Query: 393 FQPTL------------ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIA 440
            +P L             +   L+ AY + G   +A    + M   G KP      ++I 
Sbjct: 204 VKPFLIDMEQKGIFADIVTYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVIN 263

Query: 441 AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
              KK    +A  +  E+   G  P   TY  L+    R     EA+ +   +   G +P
Sbjct: 264 GLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSP 323

Query: 501 PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQDAQR 558
                 SL  + +R G   +AL  + F + K   + PD+  +  +ING    G + +A  
Sbjct: 324 DLISFSSLIGVSSRNGHLDQAL--MYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALE 381

Query: 559 VHGLMEAQGFA 569
           +   M  QG A
Sbjct: 382 IRDKMLEQGCA 392



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 42/79 (53%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +  +  Q +V  Y+ +++   ++  +++AE IL+KM E GI PD  T T L++ Y    N
Sbjct: 596 METKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLINGYVSQDN 655

Query: 308 LDRAKEAFESLRSHGFQPD 326
           L  A    + +   GF PD
Sbjct: 656 LKEAFRFHDEMLQRGFVPD 674


>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
 gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
          Length = 799

 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 145/314 (46%), Gaps = 4/314 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  YS +I+    E  ++    +  +M + GI PD+VT T ++    KA   DRA+  F
Sbjct: 198 NVVSYSIVINGFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVF 257

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + +  +GF+P+   YN +I  Y++ G+ K  + +++ M   G++     Y +LL    + 
Sbjct: 258 QQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKN 317

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G  R A    + M  +  +P + +  +L+  Y   G   +  S  D M+  G  PD    
Sbjct: 318 GRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENGLSPDHHIF 377

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
               +AY K  ++DKA+++  ++ + G  P    Y  L+D L +L  +++AE    ++  
Sbjct: 378 NIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMIN 437

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFL 553
            G  P   +  SL  +Y    ++K         E   + + P+   F  +I  L   G +
Sbjct: 438 EGVTPNIVVFNSL--VYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRV 495

Query: 554 QDAQRVHGLMEAQG 567
            + +R+  LME  G
Sbjct: 496 MEGRRLIDLMEHVG 509



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/323 (22%), Positives = 139/323 (43%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++ E     +   ++    A+AK   ++ A  I  KM ++G+ P++V    L+    K G
Sbjct: 364 LMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLG 423

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            +D A+  F  + + G  P+  V+NS++       + +    LV  M+  GI  +   + 
Sbjct: 424 RVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFN 483

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+ +    G V    ++ ++M     +P   S T L+  Y   G  D+A   FD M+ +
Sbjct: 484 TLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSI 543

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G  P +    +++  Y   + +D A  L  E+ + G  PG  TY  ++  L + +  +EA
Sbjct: 544 GLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEA 603

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
           ++L   +   G          + +   ++    +A +    L +K  Q+    F  +I  
Sbjct: 604 KELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGA 663

Query: 547 LLAGGFLQDAQRVHGLMEAQGFA 569
           LL GG  +DA  +   + A G  
Sbjct: 664 LLKGGRKEDAMDLFAAIPANGLV 686



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 84/389 (21%), Positives = 158/389 (40%), Gaps = 26/389 (6%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSE---ESFQTNVRDYSKLIDAHAKENCLE 274
           + P  + +  ++D L +   QL F  AE V  +     F+ N   Y+ LI  +      +
Sbjct: 230 IPPDVVTYTTVIDGLCK--AQL-FDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGKWK 286

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           +  ++L++M+  G+ PD  T   L++   K G    A+  F+S+   G +P    Y  +I
Sbjct: 287 EVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILI 346

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
             Y   G      S +D+M+ +G+     I+     ++A+CG +  A  I N MR     
Sbjct: 347 HGYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLS 406

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P + +   L++A  + G  D A   F+ MI  G  P+     S++      +  ++A  L
Sbjct: 407 PNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEEL 466

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
           + E+   G  P    +  L+  L  +  + E  +L+  +  +G  P       L   Y  
Sbjct: 467 VYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCL 526

Query: 515 AGIEKKALQAL--------------------GFLEAKKEQMGPDDFERIINGLLAGGFLQ 554
            G   +A +                      G+  A +       F  ++   +  G + 
Sbjct: 527 TGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVT 586

Query: 555 DAQRVHGLMEAQGFAASERLKVALISSQT 583
               +HGL + + F+ ++ L + +I+S T
Sbjct: 587 YNTILHGLFQTKRFSEAKELYLNMINSGT 615



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/256 (20%), Positives = 114/256 (44%), Gaps = 8/256 (3%)

Query: 166 TEVAEKIHERGEMILPEEPKPITGKCKLITDKILSLEKEEDPSPLLAEW-KELLQPSRID 224
           T+ AEK+ + G + +   P  +T    L      S  + +D   L  E  ++ + P  + 
Sbjct: 530 TDEAEKVFD-GMVSIGLSPTEVTYNTLL--HGYCSASRIDDAYCLFREMLRKGVTPGVVT 586

Query: 225 WINLLDRLREQNTQLYFKVAELVLS--EESFQTNVRDYSKLIDAHAKENCLEDAERILKK 282
           +  +L  L +  T+ + +  EL L+      + ++  Y+ +++   K NC+++A ++ + 
Sbjct: 587 YNTILHGLFQ--TKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQS 644

Query: 283 MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
           +   G+  +I+T T+++    K G  + A + F ++ ++G  P+   Y  +    +  G 
Sbjct: 645 LCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGS 704

Query: 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402
            +   SL   M  +G   + ++  AL+R     GD+  AG   + +    F     + +L
Sbjct: 705 LEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVEASTTSL 764

Query: 403 LVEAYGQAGDPDQARS 418
           L+  +        A+S
Sbjct: 765 LMSIFTSDEYQHHAKS 780



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 41/240 (17%), Positives = 101/240 (42%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+  +   + ++DA  + ++M   G+ P +VT   ++H   +      AKE + ++ 
Sbjct: 552 YNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMI 611

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G + D   YN ++     +        +   + + G++ +   +  ++ +  + G   
Sbjct: 612 NSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKE 671

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  +   +      P + +  L+ E   + G  ++  S F  M + G  P+ +   +++
Sbjct: 672 DAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALV 731

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
                +  + +A   L +L++  F    +T ++L+      +  + A+ L  K   L EA
Sbjct: 732 RRLLHRGDISRAGAYLSKLDERNFSVEASTTSLLMSIFTSDEYQHHAKSLPEKYHFLNEA 791


>gi|224093190|ref|XP_002309826.1| predicted protein [Populus trichocarpa]
 gi|222852729|gb|EEE90276.1| predicted protein [Populus trichocarpa]
          Length = 1480

 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 91/362 (25%), Positives = 162/362 (44%), Gaps = 36/362 (9%)

Query: 190 KCKLITDKILSLEKEEDPSPLLAEWKELLQPSRI-------------------DWINL-- 228
           + K +TD+IL L +++  + +L + K  + P+ +                   +W+NL  
Sbjct: 155 RVKYLTDRILGLTQDQFVADVLDDRKVQMTPTDLCFVVKSVGQESWHRALEVYEWLNLRH 214

Query: 229 ------------LDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
                       L  L + N Q    V   + +E S    V+ Y+ ++  +A+       
Sbjct: 215 WYSPNARMLSTILSVLGKAN-QEALAVEVFMRAEPSAGNTVQVYNAMMGVYARRGRFNKV 273

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNL--DRAKEAFESLRSHGFQPDKKVYNSMI 334
           + +L  M E G  PD+V+   L++   KAG +  + A E    +R  G +PD   YN++I
Sbjct: 274 QELLDLMRERGCKPDLVSFNTLINARLKAGAMMPNLAIELLNEVRRSGLRPDTITYNTLI 333

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
            A   A   +    + D M     +     Y A++  + +CG    A Q+ N +    F 
Sbjct: 334 SACSRASNLEEAAKVFDDMEAHHCQPDLWTYNAMISVYGRCGLSGKAEQLFNDLESRGFF 393

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P   S   L+ A+ + G+ ++ +  ++ M+++G   D+    +MI  YGK+   + AL L
Sbjct: 394 PDAVSYNSLLYAFAREGNVEKVKEIWEEMVKIGFGKDEMTYNTMIHMYGKQGQNELALQL 453

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
             +++  G  P   TYTVL+D LG+   I EA  ++ ++   G  P  K   +L   YA+
Sbjct: 454 YRDMQSSGRNPDAVTYTVLIDSLGKTNKIAEAAGVMSEMLNTGVKPTLKTYSALICGYAK 513

Query: 515 AG 516
           AG
Sbjct: 514 AG 515



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 120/243 (49%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           Q ++  Y+ +I  + +      AE++   +   G  PD V+   L++ +++ GN+++ KE
Sbjct: 358 QPDLWTYNAMISVYGRCGLSGKAEQLFNDLESRGFFPDAVSYNSLLYAFAREGNVEKVKE 417

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            +E +   GF  D+  YN+MI  Y   GQ +L + L   M +SG       Y  L+ S  
Sbjct: 418 IWEEMVKIGFGKDEMTYNTMIHMYGKQGQNELALQLYRDMQSSGRNPDAVTYTVLIDSLG 477

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           +   +  A  + + M     +PTL++ + L+  Y +AG P +A   FD M+R G +PD  
Sbjct: 478 KTNKIAEAAGVMSEMLNTGVKPTLKTYSALICGYAKAGKPVEAEETFDCMLRSGIRPDHL 537

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
             + M+  + + N   +A+ L  E+  DG     + Y +++  L ++  + +  +++  +
Sbjct: 538 AYSVMLDIHLRFNEPKRAMTLYKEMLHDGITLDHSLYELMLRTLRKVNKVEDIGRVIRDM 597

Query: 494 SEL 496
            E+
Sbjct: 598 EEI 600



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 128/287 (44%), Gaps = 4/287 (1%)

Query: 240 YFKVAELV--LSEESFQTNVRDYSKLIDAHAKENCL--EDAERILKKMNENGIVPDIVTS 295
           + KV EL+  + E   + ++  ++ LI+A  K   +    A  +L ++  +G+ PD +T 
Sbjct: 270 FNKVQELLDLMRERGCKPDLVSFNTLINARLKAGAMMPNLAIELLNEVRRSGLRPDTITY 329

Query: 296 TVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMIT 355
             L+   S+A NL+ A + F+ + +H  QPD   YN+MI  Y   G       L + + +
Sbjct: 330 NTLISACSRASNLEEAAKVFDDMEAHHCQPDLWTYNAMISVYGRCGLSGKAEQLFNDLES 389

Query: 356 SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ 415
            G       Y +LL +FA+ G+V    +I   M    F     +   ++  YG+ G  + 
Sbjct: 390 RGFFPDAVSYNSLLYAFAREGNVEKVKEIWEEMVKIGFGKDEMTYNTMIHMYGKQGQNEL 449

Query: 416 ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
           A   +  M   G  PD      +I + GK N + +A  ++ E+   G +P   TY+ L+ 
Sbjct: 450 ALQLYRDMQSSGRNPDAVTYTVLIDSLGKTNKIAEAAGVMSEMLNTGVKPTLKTYSALIC 509

Query: 476 WLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522
              +     EAE+    +   G  P       + D++ R    K+A+
Sbjct: 510 GYAKAGKPVEAEETFDCMLRSGIRPDHLAYSVMLDIHLRFNEPKRAM 556



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 145/343 (42%), Gaps = 17/343 (4%)

Query: 198  ILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNV 257
            I +    + PSP +     LLQ   +D      RL E    LY  V EL   +  F+ + 
Sbjct: 835  IFNTMMRDGPSPTVDTINGLLQALIVD-----GRLDE----LYVVVQEL--QDMGFKISK 883

Query: 258  RDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFES 317
                 ++DA A+   + + ++I   M   G  P +    V+  + S+   +   +     
Sbjct: 884  SSILLMLDAFARAGNIFEVKKIYHGMKAAGYFPTMHLYRVMARLLSRGKQVRDVEAMLSE 943

Query: 318  LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
            +   GF+PD  ++NS++  YV     +  + +   +   G+E  E+ Y  L+  +  C D
Sbjct: 944  MEEAGFKPDLSIWNSVLKMYVAIEDFRKTIQVYQRIKEDGLEPDEDTYNTLIVMY--CRD 1001

Query: 378  VRG--AGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
             R      + + MR+   +P L++   LV ++G+    +QA   F+ +   G K D    
Sbjct: 1002 HRPEEGFSLMHEMRVAGLEPKLDTYKSLVASFGKQQLVEQAEELFEELQSKGCKLDRSFY 1061

Query: 436  ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +M+  Y       KA  L   ++  G EP  AT  +L+   G      EAE++L  + E
Sbjct: 1062 HTMMKIYRNSGSHSKAERLFSMMKDAGVEPTIATMHLLMVSYGSSGQPQEAEKVLSNLKE 1121

Query: 496  LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
             G         S+ D Y R G     +Q L  ++ KKE + PD
Sbjct: 1122 TGSNLSTLPYSSVIDAYLRNGDYNIGIQKL--IQMKKEGLEPD 1162



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 58/267 (21%), Positives = 116/267 (43%), Gaps = 35/267 (13%)

Query: 273  LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
            + D E +L +M E G  PD+     ++ MY    +  +  + ++ ++  G +PD+  YN+
Sbjct: 934  VRDVEAMLSEMEEAGFKPDLSIWNSVLKMYVAIEDFRKTIQVYQRIKEDGLEPDEDTYNT 993

Query: 333  MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ------------------ 374
            +I+ Y    +P+ G SL+  M  +G+E   + Y +L+ SF +                  
Sbjct: 994  LIVMYCRDHRPEEGFSLMHEMRVAGLEPKLDTYKSLVASFGKQQLVEQAEELFEELQSKG 1053

Query: 375  C-----------------GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
            C                 G    A ++ ++M+    +PT+ +  LL+ +YG +G P +A 
Sbjct: 1054 CKLDRSFYHTMMKIYRNSGSHSKAERLFSMMKDAGVEPTIATMHLLMVSYGSSGQPQEAE 1113

Query: 418  SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
                 +   G        +S+I AY +    +  +  L++++K+G EP    +T  +   
Sbjct: 1114 KVLSNLKETGSNLSTLPYSSVIDAYLRNGDYNIGIQKLIQMKKEGLEPDHRIWTCFIRAA 1173

Query: 478  GRLQLINEAEQLLGKISELGEAPPFKI 504
               +  +EA  LL  + + G   P ++
Sbjct: 1174 SLSRRTSEAIVLLNALQDAGFDLPIRL 1200



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 71/367 (19%), Positives = 144/367 (39%), Gaps = 9/367 (2%)

Query: 210  LLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVA---------ELVLSEESFQTNVRDY 260
            L+ E  ++    R   I   + L E    LY K+          +   S+     N+  Y
Sbjct: 722  LITEASQVFSDMRFCGIKASESLYESMVLLYCKMGFPETAHHLIDFAESDGILLNNISLY 781

Query: 261  SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320
              +I+A+ +    + AE +   + +  I  D      L+  Y+ +G  +RA+  F ++  
Sbjct: 782  VNVIEAYGRLKLWQKAESVAGNLRQRCITVDRKVWNALIEAYAASGCYERARAIFNTMMR 841

Query: 321  HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRG 380
             G  P     N ++ A +  G+      +V  +   G + S+   L +L +FA+ G++  
Sbjct: 842  DGPSPTVDTINGLLQALIVDGRLDELYVVVQELQDMGFKISKSSILLMLDAFARAGNIFE 901

Query: 381  AGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIA 440
              +I + M+   + PT+    ++     +        +    M   G KPD     S++ 
Sbjct: 902  VKKIYHGMKAAGYFPTMHLYRVMARLLSRGKQVRDVEAMLSEMEEAGFKPDLSIWNSVLK 961

Query: 441  AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
             Y       K + +   +++DG EP   TY  L+    R     E   L+ ++   G  P
Sbjct: 962  MYVAIEDFRKTIQVYQRIKEDGLEPDEDTYNTLIVMYCRDHRPEEGFSLMHEMRVAGLEP 1021

Query: 501  PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVH 560
                  SL   + +  + ++A +    L++K  ++    +  ++      G    A+R+ 
Sbjct: 1022 KLDTYKSLVASFGKQQLVEQAEELFEELQSKGCKLDRSFYHTMMKIYRNSGSHSKAERLF 1081

Query: 561  GLMEAQG 567
             +M+  G
Sbjct: 1082 SMMKDAG 1088



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 94/212 (44%), Gaps = 20/212 (9%)

Query: 260  YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
            Y  L+ +  K+  +E AE + +++   G   D      ++ +Y  +G+  +A+  F  ++
Sbjct: 1026 YKSLVASFGKQQLVEQAEELFEELQSKGCKLDRSFYHTMMKIYRNSGSHSKAERLFSMMK 1085

Query: 320  SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
              G +P     + ++++Y ++GQP+    ++  +  +G   S   Y +++ ++ + GD  
Sbjct: 1086 DAGVEPTIATMHLLMVSYGSSGQPQEAEKVLSNLKETGSNLSTLPYSSVIDAYLRNGDYN 1145

Query: 380  GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA--------RSNFDYMIR-LGHKP 430
               Q    M+ E  +P     T  + A   +    +A         + FD  IR L  KP
Sbjct: 1146 IGIQKLIQMKKEGLEPDHRIWTCFIRAASLSRRTSEAIVLLNALQDAGFDLPIRLLTEKP 1205

Query: 431  DDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
            +     S+++A      LD+ L +L  LE + 
Sbjct: 1206 E-----SLVSA------LDRCLEMLETLEDNA 1226


>gi|218197756|gb|EEC80183.1| hypothetical protein OsI_22045 [Oryza sativa Indica Group]
          Length = 577

 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 137/290 (47%), Gaps = 6/290 (2%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVA---ELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           L+P  I + N L     Q + L   VA   E++ SE   + ++  Y+ ++  H +    +
Sbjct: 62  LRPDAITY-NTLISACSQGSNLDDAVAVFEEMIASE--CRPDLWTYNAMVSVHGRCGKAQ 118

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           +AE + K++ E G  PD VT   L++ ++K G+++R +   E L   GF+ D   YN+MI
Sbjct: 119 EAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMI 178

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
             Y   G+  L + L D M   G       Y  L+ S  +   +  AG++   M     +
Sbjct: 179 HMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLK 238

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           PTL + + L+ AY ++G  D A   FD M+  G KPD      M+  + + +   K + L
Sbjct: 239 PTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDETRKLMVL 298

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKI 504
              + KDG++P    Y VL+  L +    +E E ++  +  + E  P  I
Sbjct: 299 YRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDMEAVFEMNPLVI 348



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 126/257 (49%), Gaps = 2/257 (0%)

Query: 267 HAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR--AKEAFESLRSHGFQ 324
           +A+    +DA ++L  M +  I PD+V+   L++  +K+G L    A E    +R  G +
Sbjct: 4   YARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVALELLHEVRQAGLR 63

Query: 325 PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQI 384
           PD   YN++I A          +++ + MI S        Y A++    +CG  + A  +
Sbjct: 64  PDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVHGRCGKAQEAELM 123

Query: 385 TNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGK 444
              +  + FQP   +   L+ A+ + GD ++     + +++ G + D     +MI  YGK
Sbjct: 124 FKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGK 183

Query: 445 KNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKI 504
              LD AL L  E+   G  P   TYTVLVD LG++  I+EA ++L ++++ G  P    
Sbjct: 184 MGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLVT 243

Query: 505 QVSLCDMYARAGIEKKA 521
             +L   YA++G +  A
Sbjct: 244 FSALICAYAKSGRQDDA 260


>gi|242069905|ref|XP_002450229.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
 gi|241936072|gb|EES09217.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
          Length = 797

 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 146/314 (46%), Gaps = 4/314 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ +I+    E  ++ A  +  +M + GI P++VT T ++    KA  +DRA+  F
Sbjct: 202 NVVSYAIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVF 261

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + +   G +PD   YN +I  Y++ G+ K  + +++ M   G++     Y +LL      
Sbjct: 262 QQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNN 321

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G  R A  + + M  +  +P +    +L+  Y   G   +     + M+  G  PD    
Sbjct: 322 GRCREARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIF 381

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +  AY KK ++D+A+++  ++++ G  P    Y  L+D L +L  +++A     ++  
Sbjct: 382 NIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMMN 441

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFL 553
            G AP   +  SL  +Y    ++K       + E   + + PD   F  I+  L   G +
Sbjct: 442 EGVAPNIFVFNSL--VYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQV 499

Query: 554 QDAQRVHGLMEAQG 567
             AQR+  LME  G
Sbjct: 500 MKAQRLIDLMERVG 513



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 69/310 (22%), Positives = 138/310 (44%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++ +  A+AK+  +++A  I  KM + G+ PD+V    L+    K G +D A   F  + 
Sbjct: 381 FNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMM 440

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G  P+  V+NS++       + +        M+  GI      +  +L +    G V 
Sbjct: 441 NEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVM 500

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++ ++M     +P + S T L+  +   G  D+A  + D M+ +G KPD+    +++
Sbjct: 501 KAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLL 560

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             Y +   +D A  +  E+ ++G  PG  TY+ ++  L   +  +EA++L   +   G+ 
Sbjct: 561 HGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQ 620

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
               I   + +  ++     +A +    L +K  Q+    F  +I  L   G  +DA  +
Sbjct: 621 WNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHL 680

Query: 560 HGLMEAQGFA 569
              + + G  
Sbjct: 681 FATISSYGLV 690



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 73/334 (21%), Positives = 131/334 (39%), Gaps = 15/334 (4%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +S    + +   Y  L++         +A  +   M   GI P++    +L+H Y+  G 
Sbjct: 299 MSAHGLKPDCYTYGSLLNYLCNNGRCREARFLFDSMIRKGIKPNVAIYGILIHGYATKGA 358

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L    +    +  +G  PD  ++N +  AY         M + + M   G+      Y A
Sbjct: 359 LSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGA 418

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+ +  + G V  A    N M  E   P +     LV         ++A+  +  M+  G
Sbjct: 419 LIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQG 478

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            +PD     +++     K  + KA  L+  +E+ G  PG  +YT L+     +  I+EA 
Sbjct: 479 IRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAA 538

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
           + L  +  +G  P      +L   Y RAG    A     F E  +  + P          
Sbjct: 539 KSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGV--FREMLRNGITP---------- 586

Query: 548 LAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
              G +  +  +HGL   + F+ ++ L + +I+S
Sbjct: 587 ---GVVTYSTILHGLFTTRRFSEAKELYLNMITS 617



 Score = 47.4 bits (111), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 69/148 (46%), Gaps = 2/148 (1%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           Q N+  Y+ +++  +K NC+++A ++ + +       +I T  +++    K+G  + A  
Sbjct: 620 QWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMH 679

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            F ++ S+G  PD   Y  +    +  G  +    L   M  SG   +  +  AL+R   
Sbjct: 680 LFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLNALVRRLL 739

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCT 401
             GD+  AG    + +++E   +LE+ T
Sbjct: 740 HRGDITRAGAY--LCKLDEKNFSLEAST 765


>gi|168019209|ref|XP_001762137.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162686541|gb|EDQ72929.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 513

 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 129/266 (48%)

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           V  ++ +I+ + K +    AE + + M +    P + T T L++ +++ GN  RA+E F 
Sbjct: 206 VNTFTLMINIYGKAHHSAKAEHLFQSMRKALCPPSLFTYTALINAHAREGNCVRAEEIFA 265

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
            L+S GF PD   YN+++ AY   G P     + + M+ +G++     Y  L+ +F + G
Sbjct: 266 ELQSVGFVPDIYTYNALLEAYSRGGHPAGAKEVFETMLEAGVKADHVSYNILIDAFGRAG 325

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
            +  A  I + M+   F+PT++S  LL+ A+ +AG    A +    +  +G +PD     
Sbjct: 326 LISDAQAIYDSMKKVGFKPTMKSHILLLSAFVKAGRVTDAENFVRRLESMGVEPDTFMFN 385

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
           S++ AYG    +DK  +L   ++    +P   T   L++   +   I  AE++   +   
Sbjct: 386 SLLGAYGNSGRMDKMESLYESMQGSVCKPDIITLNTLINVYAQGGYIERAEEIFNSLESK 445

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKAL 522
           G  P      SL   Y++  + +K +
Sbjct: 446 GFTPDVMSWTSLMGAYSKRKLYRKCV 471



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 155/342 (45%), Gaps = 21/342 (6%)

Query: 235 QNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVT 294
           +NT    K  + + +E SF         L+ A+++   LE AER+L +M E+   P +VT
Sbjct: 121 ENTFHLMKKFQCLPTETSFNV-------LMAAYSRGGQLERAERVLHEMKESNCSPGLVT 173

Query: 295 STVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMI 354
               + + +K+G+   A++ F  +++ G  P    +  MI  Y  A        L   M 
Sbjct: 174 YNTYLEVLNKSGSWQLAEDVFREMQNRGVPPAVNTFTLMINIYGKAHHSAKAEHLFQSMR 233

Query: 355 TSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPD 414
            +    S   Y AL+ + A+ G+   A +I   ++   F P + +   L+EAY + G P 
Sbjct: 234 KALCPPSLFTYTALINAHAREGNCVRAEEIFAELQSVGFVPDIYTYNALLEAYSRGGHPA 293

Query: 415 QARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
            A+  F+ M+  G K D      +I A+G+  L+  A  +   ++K GF+P   ++ +L+
Sbjct: 294 GAKEVFETMLEAGVKADHVSYNILIDAFGRAGLISDAQAIYDSMKKVGFKPTMKSHILLL 353

Query: 475 DWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ 534
               +   + +AE  + ++  +G  P   +  SL   Y  +G   K       +E+  E 
Sbjct: 354 SAFVKAGRVTDAENFVRRLESMGVEPDTFMFNSLLGAYGNSGRMDK-------MESLYES 406

Query: 535 M-----GPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
           M      PD      +IN    GG+++ A+ +   +E++GF 
Sbjct: 407 MQGSVCKPDIITLNTLINVYAQGGYIERAEEIFNSLESKGFT 448



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 151/343 (44%), Gaps = 31/343 (9%)

Query: 196 DKILSLEKEEDPSPLLAEWK---ELLQPSRIDWINLLDRLRE-QN-------------TQ 238
           +++L   KE + SP L  +    E+L  S   W    D  RE QN               
Sbjct: 156 ERVLHEMKESNCSPGLVTYNTYLEVLNKSG-SWQLAEDVFREMQNRGVPPAVNTFTLMIN 214

Query: 239 LYFKVAELVLSEESFQT--------NVRDYSKLIDAHAKE-NCLEDAERILKKMNENGIV 289
           +Y K      +E  FQ+        ++  Y+ LI+AHA+E NC+  AE I  ++   G V
Sbjct: 215 IYGKAHHSAKAEHLFQSMRKALCPPSLFTYTALINAHAREGNCVR-AEEIFAELQSVGFV 273

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL 349
           PDI T   L+  YS+ G+   AKE FE++   G + D   YN +I A+  AG      ++
Sbjct: 274 PDIYTYNALLEAYSRGGHPAGAKEVFETMLEAGVKADHVSYNILIDAFGRAGLISDAQAI 333

Query: 350 VDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409
            D M   G + + + ++ LL +F + G V  A      +     +P       L+ AYG 
Sbjct: 334 YDSMKKVGFKPTMKSHILLLSAFVKAGRVTDAENFVRRLESMGVEPDTFMFNSLLGAYGN 393

Query: 410 AGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPAT 469
           +G  D+  S ++ M     KPD     ++I  Y +   +++A  +   LE  GF P   +
Sbjct: 394 SGRMDKMESLYESMQGSVCKPDIITLNTLINVYAQGGYIERAEEIFNSLESKGFTPDVMS 453

Query: 470 YTVLVDWLGRLQLINEAEQLLGKISELGEAP---PFKIQVSLC 509
           +T L+    + +L  +   +  K+   G  P     K+ +S C
Sbjct: 454 WTSLMGAYSKRKLYRKCVSVYQKMLIAGCIPDRATAKVLLSSC 496



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 57/264 (21%), Positives = 108/264 (40%)

Query: 318 LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
           L+   F+PD   +N ++ AY    Q     +   +M       +E  +  L+ ++++ G 
Sbjct: 92  LQGSMFKPDVGCFNMLMDAYGRTKQWTEAENTFHLMKKFQCLPTETSFNVLMAAYSRGGQ 151

Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
           +  A ++ + M+     P L +    +E   ++G    A   F  M   G  P       
Sbjct: 152 LERAERVLHEMKESNCSPGLVTYNTYLEVLNKSGSWQLAEDVFREMQNRGVPPAVNTFTL 211

Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           MI  YGK +   KA +L   + K    P   TYT L++   R      AE++  ++  +G
Sbjct: 212 MINIYGKAHHSAKAEHLFQSMRKALCPPSLFTYTALINAHAREGNCVRAEEIFAELQSVG 271

Query: 498 EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQ 557
             P      +L + Y+R G    A +    +     +     +  +I+     G + DAQ
Sbjct: 272 FVPDIYTYNALLEAYSRGGHPAGAKEVFETMLEAGVKADHVSYNILIDAFGRAGLISDAQ 331

Query: 558 RVHGLMEAQGFAASERLKVALISS 581
            ++  M+  GF  + +  + L+S+
Sbjct: 332 AIYDSMKKVGFKPTMKSHILLLSA 355


>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Vitis vinifera]
          Length = 609

 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 149/316 (47%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F  +V  Y+ +ID + K   +  A+ +LK+M    I P+ +T  +L+  + +  N+  AK
Sbjct: 260 FSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAK 319

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           + FE ++  G QP+   YNS+I    + G+    + L D M   G++ +   Y AL+  F
Sbjct: 320 KVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGF 379

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            +   ++ A ++ + +      P + +   L++AYG+AG  D A      M+  G  P+ 
Sbjct: 380 CKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNV 439

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
                +I  + ++  + +A  L  E+E +G +    TY +LVD L +     +A +LL +
Sbjct: 440 STYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDE 499

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
           + E+G  P      +L D Y R G    AL     +E K  +     +  +I G    G 
Sbjct: 500 MFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVTYNVLIKGFCNKGK 559

Query: 553 LQDAQRVHGLMEAQGF 568
           L++A R+   M  +G 
Sbjct: 560 LEEANRLLNEMLEKGL 575



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 133/284 (46%), Gaps = 2/284 (0%)

Query: 218 LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           + P+ I +  L+D   R++N     KV E  +  +  Q NV  Y+ LI+       L++A
Sbjct: 295 IHPNEITFNILIDGFCRDENVTAAKKVFE-EMQRQGLQPNVVTYNSLINGLCSNGKLDEA 353

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
             +  KM+  G+ P++VT   L++ + K   L  A+E  + +   G  P+   +N++I A
Sbjct: 354 LGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDA 413

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           Y  AG+      L  MM+ +G+  +   Y  L+  F + G+V+ A ++   M     +  
Sbjct: 414 YGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKAD 473

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           L +  +LV+A  + G+  +A    D M  +G  P      ++I  Y ++     ALN+  
Sbjct: 474 LVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRT 533

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
            +EK G      TY VL+        + EA +LL ++ E G  P
Sbjct: 534 LMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIP 577



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 150/349 (42%), Gaps = 10/349 (2%)

Query: 240 YFKVAELVLSEESFQTNVRDY---------SKLIDAHAKENCLEDAERILKKMNENGIVP 290
           Y K  E+ L+ E F     DY         + ++ +  KE  +   E + K+M    I  
Sbjct: 169 YVKNGEMDLALEGFD-RAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGV 227

Query: 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV 350
           ++VT  V+++   K G   +A +  E +++ GF P    YN++I  Y  AG+     +L+
Sbjct: 228 NVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALL 287

Query: 351 DMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410
             M+   I  +E  +  L+  F +  +V  A ++   M+ +  QP + +   L+      
Sbjct: 288 KEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSN 347

Query: 411 GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATY 470
           G  D+A    D M  +G KP+     ++I  + KK +L +A  +L ++ K G  P   T+
Sbjct: 348 GKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITF 407

Query: 471 TVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEA 530
             L+D  G+   +++A  L   + + G  P       L   + R G  K+A +    +E 
Sbjct: 408 NTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEG 467

Query: 531 KKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
              +     +  +++ L   G  + A R+   M   G   S     ALI
Sbjct: 468 NGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALI 516



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 119/263 (45%), Gaps = 10/263 (3%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELV-----LSEESFQTNVRDYSKLIDAHAKENC 272
           LQP+ + + +L++ L         K+ E +     +S    + NV  Y+ LI+   K+  
Sbjct: 330 LQPNVVTYNSLINGLCSNG-----KLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKM 384

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           L++A  +L  + + G+ P+++T   L+  Y KAG +D A      +   G  P+   YN 
Sbjct: 385 LKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNC 444

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I+ +   G  K    L   M  +G++     Y  L+ +  + G+ R A ++ + M    
Sbjct: 445 LIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVG 504

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P+  +   L++ Y + G+   A +    M + G + +      +I  +  K  L++A 
Sbjct: 505 LNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVTYNVLIKGFCNKGKLEEAN 564

Query: 453 NLLLELEKDGFEPGPATYTVLVD 475
            LL E+ + G  P   TY +L D
Sbjct: 565 RLLNEMLEKGLIPNRTTYDILRD 587



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 78/355 (21%), Positives = 144/355 (40%), Gaps = 41/355 (11%)

Query: 256 NVRDYSK---LIDAHAKENCLEDAE--RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           N ++Y+K   L+D+ AK     ++     L  +   G    I+   +LV  Y K G +D 
Sbjct: 119 NAKNYNKIRALLDSFAKNAHYSNSTIFHSLSVLGSWGCANSIIVD-MLVWAYVKNGEMDL 177

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A E F+    +GF+      N M+++ V  G+  +  S+   MI   I  +   +  ++ 
Sbjct: 178 ALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVIN 237

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAG-----------------DP 413
              + G  + AG +   M+   F P++ +   +++ Y +AG                  P
Sbjct: 238 GLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHP 297

Query: 414 DQ------------------ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
           ++                  A+  F+ M R G +P+     S+I        LD+AL L 
Sbjct: 298 NEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQ 357

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
            ++   G +P   TY  L++   + +++ EA ++L  I + G AP      +L D Y +A
Sbjct: 358 DKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKA 417

Query: 516 GIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAA 570
           G    A      +           +  +I G    G +++A+++   ME  G  A
Sbjct: 418 GRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKA 472


>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
 gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/362 (25%), Positives = 170/362 (46%), Gaps = 16/362 (4%)

Query: 219 QPSRIDWINLLDRLREQNTQLYFKVAELV--LSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           QP  + +  L+D L +   +L  +  ++   +  +     V  Y+ LI      +  ++A
Sbjct: 228 QPDVVTYSTLIDSLCKD--RLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEA 285

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
             +L +M    I+PDIVT ++L+ ++ K GN+  A+   +++   G +P+   YNS++  
Sbjct: 286 SAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHG 345

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           Y    +      L D+MIT G +     Y  L+  +     +  A Q+ N M  +   P 
Sbjct: 346 YSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPN 405

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS-MIAAYGKKNLLDKALNLL 455
             S T L+ A+ Q G   +AR  F  M   G+ P D CT S ++  + K+  L KA  L 
Sbjct: 406 TVSYTTLIHAFCQLGKLREARELFKDMHTNGYLP-DLCTYSVLLEGFCKQGYLGKAFRLF 464

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
             ++    +P    YT+L+D + +   +N A +L  ++   G  P  +I  ++ +   + 
Sbjct: 465 RAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKE 524

Query: 516 GIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD-----AQRVHGLMEAQGFAA 570
           G+  +AL+A  F + +++   P++F      ++  GFLQ      A ++ G M  +GF A
Sbjct: 525 GLLDEALEA--FRKMEEDGCPPNEFSY---NVIIRGFLQHKDESRAVQLIGEMRDKGFVA 579

Query: 571 SE 572
            E
Sbjct: 580 DE 581



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 147/303 (48%), Gaps = 5/303 (1%)

Query: 198 ILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTN 256
           + S  + ++ S +L E   L + P  + +  L+D   ++   L  +     ++E   + N
Sbjct: 276 LCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPN 335

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           V  Y+ L+  ++ +  + +A ++   M   G  PD+ + ++L++ Y     +D AK+ F 
Sbjct: 336 VITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFN 395

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
            +   G  P+   Y ++I A+   G+ +    L   M T+G       Y  LL  F + G
Sbjct: 396 EMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQG 455

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
            +  A ++   M+    +P L   T+L+++  ++G+ + AR  F  +   G +PD +   
Sbjct: 456 YLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYT 515

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE--AEQLLGKIS 494
           ++I    K+ LLD+AL    ++E+DG  P   +Y V++   G LQ  +E  A QL+G++ 
Sbjct: 516 TIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIR--GFLQHKDESRAVQLIGEMR 573

Query: 495 ELG 497
           + G
Sbjct: 574 DKG 576



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 149/353 (42%), Gaps = 10/353 (2%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELV--LSEESFQTNVRDYSKLIDAHAKENCLED 275
           LQP+ I +  L++ L +     + +  EL   +     Q +V  Y+ +I+   K      
Sbjct: 157 LQPTIITFTTLINGLCKAGE--FAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAA 214

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A  ++KKM E G  PD+VT + L+    K   ++ A + F  +++ G  P    Y S+I 
Sbjct: 215 AAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQ 274

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
              +  + K   ++++ M +  I      +  L+  F + G+V  A  +   M     +P
Sbjct: 275 GLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEP 334

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
            + +   L+  Y    +  +AR  FD MI  G KPD    + +I  Y     +D+A  L 
Sbjct: 335 NVITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLF 394

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
            E+   G  P   +YT L+    +L  + EA +L   +   G  P       L + + + 
Sbjct: 395 NEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQ 454

Query: 516 GIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQR------VHGL 562
           G   KA +    ++    +     +  +I+ +   G L  A++      VHGL
Sbjct: 455 GYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGL 507



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 86/414 (20%), Positives = 161/414 (38%), Gaps = 53/414 (12%)

Query: 207 PSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEE--SFQTNVRDYSKLI 264
           P P + ++ +LL          + R+R    Q Y  V  L    E      N    + LI
Sbjct: 86  PLPCIIQFNKLLSA--------IVRMR----QYYDAVISLSKQMELAGLSPNTCTLNILI 133

Query: 265 DAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQ 324
           +       ++    +L K+ + G+ P I+T T L++   KAG   +A E F+ + + G Q
Sbjct: 134 NCFCLMQHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMVARGCQ 193

Query: 325 PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQI 384
           PD   Y ++I      G+      L+  M   G +     Y  L+ S  +   V  A  I
Sbjct: 194 PDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDI 253

Query: 385 TNIMRIEEFQPTLESCT-----------------------------------LLVEAYGQ 409
            + M+ +   PT+ S T                                   LL++ + +
Sbjct: 254 FSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCK 313

Query: 410 AGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPAT 469
            G+  +A+     M  +G +P+     S++  Y  +  + +A  L   +   G +P   +
Sbjct: 314 EGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFS 373

Query: 470 YTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLE 529
           Y++L++    ++ I+EA+QL  ++   G  P      +L   + + G  ++A +   F +
Sbjct: 374 YSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREAREL--FKD 431

Query: 530 AKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
                  PD   +  ++ G    G+L  A R+   M+      +  +   LI S
Sbjct: 432 MHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDS 485



 Score = 38.9 bits (89), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 25/109 (22%), Positives = 52/109 (47%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           L+P+ + +  L+D + +     + +     L     Q +V+ Y+ +I+   KE  L++A 
Sbjct: 472 LKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEAL 531

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPD 326
              +KM E+G  P+  +  V++  + +  +  RA +    +R  GF  D
Sbjct: 532 EAFRKMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMRDKGFVAD 580


>gi|449453081|ref|XP_004144287.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Cucumis sativus]
 gi|449489420|ref|XP_004158306.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Cucumis sativus]
          Length = 720

 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/371 (22%), Positives = 162/371 (43%), Gaps = 11/371 (2%)

Query: 209 PLLAEWKELLQPSRIDWINLL--------DRLREQNTQLYFKVAELVLSEESFQTNVRDY 260
           PLL +  E ++  +I+   LL         +  + N  LYF     ++           +
Sbjct: 263 PLLQKLYEEIESDKIELDGLLLNDIILGFAKAGDPNRALYFLS---MVQASGLNPKTSTF 319

Query: 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320
             +I A       E+AE I ++M E G+ P I     L+  Y++ G+L  A+     +  
Sbjct: 320 VAVISALGNHGRTEEAEAIFEEMKEGGLKPRIKAFNALLKGYARKGSLKEAESIISEMEK 379

Query: 321 HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRG 380
            G  PD+  Y  ++ AY N G+ +    L+  M    ++ +  I+  +L S+   G+ + 
Sbjct: 380 SGLSPDEHTYGLLVDAYANVGRWESARHLLKQMEARNVQPNTFIFSRILASYRDRGEWQK 439

Query: 381 AGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIA 440
             ++   M+    +P      ++++ +G+    D A   +D M+  G +PD     ++I 
Sbjct: 440 TFEVLREMKNSNVKPDRHFYNVMIDTFGKFNCLDHAMETYDRMLSEGIEPDVVTWNTLID 499

Query: 441 AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
            + K    D+A  L  E+++ G+ P P TY ++++ LG  +  +E + LLGK+   G  P
Sbjct: 500 CHRKHGYHDRAAELFEEMQERGYLPCPTTYNIMINSLGEQEKWDEVKILLGKMQSQGLLP 559

Query: 501 PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVH 560
                 +L D+Y  +G    A+  L  +++   +     +  +IN     G  + A   +
Sbjct: 560 NVVTYTTLVDIYGHSGRFNDAIDCLEAMKSAGLKPSATMYNALINAFAQRGLSEQAVNAY 619

Query: 561 GLMEAQGFAAS 571
            +M + G   S
Sbjct: 620 RVMISDGLRPS 630



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 102/221 (46%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +ID   K NCL+ A     +M   GI PD+VT   L+  + K G  DRA E FE ++
Sbjct: 459 YNVMIDTFGKFNCLDHAMETYDRMLSEGIEPDVVTWNTLIDCHRKHGYHDRAAELFEEMQ 518

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G+ P    YN MI +     +      L+  M + G+  +   Y  L+  +   G   
Sbjct: 519 ERGYLPCPTTYNIMINSLGEQEKWDEVKILLGKMQSQGLLPNVVTYTTLVDIYGHSGRFN 578

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A      M+    +P+      L+ A+ Q G  +QA + +  MI  G +P      S+I
Sbjct: 579 DAIDCLEAMKSAGLKPSATMYNALINAFAQRGLSEQAVNAYRVMISDGLRPSLLALNSLI 638

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
            A+G+     +A ++L  ++++  +P   TYT L+  L R+
Sbjct: 639 NAFGEDRRDIEAFSILQYMKENDVKPDVVTYTTLMKALIRV 679



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 119/236 (50%), Gaps = 6/236 (2%)

Query: 216 ELLQPSRIDWINLLDRLREQNTQLYFKVAELV--LSEESFQTNVRDYSKLIDAHAKENCL 273
           E ++P  + W  L+D  R+     + + AEL   + E  +      Y+ +I++  ++   
Sbjct: 485 EGIEPDVVTWNTLIDCHRKHG--YHDRAAELFEEMQERGYLPCPTTYNIMINSLGEQEKW 542

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           ++ + +L KM   G++P++VT T LV +Y  +G  + A +  E+++S G +P   +YN++
Sbjct: 543 DEVKILLGKMQSQGLLPNVVTYTTLVDIYGHSGRFNDAIDCLEAMKSAGLKPSATMYNAL 602

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           I A+   G  +  ++   +MI+ G+  S     +L+ +F +      A  I   M+  + 
Sbjct: 603 INAFAQRGLSEQAVNAYRVMISDGLRPSLLALNSLINAFGEDRRDIEAFSILQYMKENDV 662

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA--YGKKNL 447
           +P + + T L++A  +    D+  + ++ MI  G  PD +  A + +A  Y K+ L
Sbjct: 663 KPDVVTYTTLMKALIRVDKFDKVPAVYEEMILSGCTPDGKARAMLRSALRYMKRTL 718



 Score = 42.7 bits (99), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 68/136 (50%), Gaps = 6/136 (4%)

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
           ++I A  + N L+KALNL+  + +DGF+     Y++++  L R   I+    LL K+ E 
Sbjct: 214 ALIGACARNNDLEKALNLMSRMRQDGFQSDFINYSLIIQSLTRTNKIDIP--LLQKLYEE 271

Query: 497 GEAPPFKIQ-VSLCDM---YARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
            E+   ++  + L D+   +A+AG   +AL  L  ++A         F  +I+ L   G 
Sbjct: 272 IESDKIELDGLLLNDIILGFAKAGDPNRALYFLSMVQASGLNPKTSTFVAVISALGNHGR 331

Query: 553 LQDAQRVHGLMEAQGF 568
            ++A+ +   M+  G 
Sbjct: 332 TEEAEAIFEEMKEGGL 347


>gi|302826107|ref|XP_002994593.1| hypothetical protein SELMODRAFT_138846 [Selaginella moellendorffii]
 gi|300137364|gb|EFJ04344.1| hypothetical protein SELMODRAFT_138846 [Selaginella moellendorffii]
          Length = 521

 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 98/374 (26%), Positives = 166/374 (44%), Gaps = 48/374 (12%)

Query: 242 KVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM 301
           ++ E VL   +F+ ++  Y+ LIDA+ K   +EDAE+   +M E   VP+  T  VL++ 
Sbjct: 89  QMCEWVLQGTTFRPDLGCYNLLIDAYGKSLNIEDAEKTFNRMQEALCVPNEETFGVLING 148

Query: 302 YSKAGNLDRAKEAFESLRSHGF-----------------------------------QPD 326
           Y  AG+ ++A+E F  ++  G+                                   +P+
Sbjct: 149 YRLAGSFEKAEELFVQMQKRGYSPGPLACNTFLHVLEDAKEYRRAEALFRDLEKYECEPN 208

Query: 327 KKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITN 386
              YN MI+ Y  AG+P     L   M  +    +   + AL+ +FA+ G  R A +  +
Sbjct: 209 IDTYNRMIVIYGKAGEPSKAEMLYRSMRRAMCPPNICTFTALMNAFARQGLYREAERYFD 268

Query: 387 IMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKN 446
            ++  +++P   +   L+EAY Q G P  A   F  M R G  PD      +I AYG+  
Sbjct: 269 KLQEFDYKPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILINAYGRAG 328

Query: 447 LLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQV 506
           L + A  +   ++  GF P   +  +L+    R   + EAE+L+  +   G  P   I  
Sbjct: 329 LYEDAEKIFKSMQSAGFSPNLKSNMLLLSAYARAGRVEEAEELVSAMERDGTKPDTLIYN 388

Query: 507 SLCDMYARAGIEKKALQAL--GFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGL 562
           SL + Y  +G   + ++AL    +++  +Q  PD   +  +I      GF+  A+ +   
Sbjct: 389 SLINAYGVSG-RHEDMEALLAKMVKSSSKQTKPDIGTYNTLIQVYAQAGFIPRAEELF-- 445

Query: 563 MEAQGFAASERLKV 576
              QG A   RLK+
Sbjct: 446 ---QGLA---RLKL 453



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 121/273 (44%), Gaps = 3/273 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  Y+++I  + K      AE + + M      P+I T T L++ +++ G    A+  F
Sbjct: 208 NIDTYNRMIVIYGKAGEPSKAEMLYRSMRRAMCPPNICTFTALMNAFARQGLYREAERYF 267

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + L+   ++PD   YN+++ AY   G P   + +   M  +G       +  L+ ++ + 
Sbjct: 268 DKLQEFDYKPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILINAYGRA 327

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G    A +I   M+   F P L+S  LL+ AY +AG  ++A      M R G KPD    
Sbjct: 328 GLYEDAEKIFKSMQSAGFSPNLKSNMLLLSAYARAGRVEEAEELVSAMERDGTKPDTLIY 387

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDG---FEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
            S+I AYG     +    LL ++ K      +P   TY  L+    +   I  AE+L   
Sbjct: 388 NSLINAYGVSGRHEDMEALLAKMVKSSSKQTKPDIGTYNTLIQVYAQAGFIPRAEELFQG 447

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
           ++ L   P      +L   YA+  + +K    L
Sbjct: 448 LARLKLVPDATTWTALMGGYAKKKLYRKCTSIL 480



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 115/246 (46%), Gaps = 3/246 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L E  ++ +   Y+ L++A+++      A  I + M  NG  PD V+  +L++ Y +AG 
Sbjct: 270 LQEFDYKPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILINAYGRAGL 329

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            + A++ F+S++S GF P+ K    ++ AY  AG+ +    LV  M   G +    IY +
Sbjct: 330 YEDAEKIFKSMQSAGFSPNLKSNMLLLSAYARAGRVEEAEELVSAMERDGTKPDTLIYNS 389

Query: 368 LLRSFAQCGDVRGAGQITNIM---RIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
           L+ ++   G       +   M     ++ +P + +   L++ Y QAG   +A   F  + 
Sbjct: 390 LINAYGVSGRHEDMEALLAKMVKSSSKQTKPDIGTYNTLIQVYAQAGFIPRAEELFQGLA 449

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
           RL   PD     +++  Y KK L  K  ++L ++ + G      T  VL       + + 
Sbjct: 450 RLKLVPDATTWTALMGGYAKKKLYRKCTSILKKMLESGCRADAVTARVLFSACRSPEQVE 509

Query: 485 EAEQLL 490
           +  QL+
Sbjct: 510 QVTQLM 515



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 122/289 (42%), Gaps = 6/289 (2%)

Query: 296 TVLVHMYSKAGNLDRAKEAFE-SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMI 354
           +V+VH ++   +  R  +  E  L+   F+PD   YN +I AY  +   +      + M 
Sbjct: 73  SVVVHFWNYK-DWPRVTQMCEWVLQGTTFRPDLGCYNLLIDAYGKSLNIEDAEKTFNRMQ 131

Query: 355 TSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPD 414
            +    +EE +  L+  +   G    A ++   M+   + P   +C   +     A +  
Sbjct: 132 EALCVPNEETFGVLINGYRLAGSFEKAEELFVQMQKRGYSPGPLACNTFLHVLEDAKEYR 191

Query: 415 QARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
           +A + F  + +   +P+      MI  YGK     KA  L   + +    P   T+T L+
Sbjct: 192 RAEALFRDLEKYECEPNIDTYNRMIVIYGKAGEPSKAEMLYRSMRRAMCPPNICTFTALM 251

Query: 475 DWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ 534
           +   R  L  EAE+   K+ E    P      +L + Y++ G    AL+   F   ++  
Sbjct: 252 NAFARQGLYREAERYFDKLQEFDYKPDHYAYNALMEAYSQGGSPAGALEI--FQTMQRNG 309

Query: 535 MGPDDFER--IINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
             PD      +IN     G  +DA+++   M++ GF+ + +  + L+S+
Sbjct: 310 CFPDTVSHNILINAYGRAGLYEDAEKIFKSMQSAGFSPNLKSNMLLLSA 358


>gi|222635128|gb|EEE65260.1| hypothetical protein OsJ_20463 [Oryza sativa Japonica Group]
          Length = 1443

 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 137/290 (47%), Gaps = 6/290 (2%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVA---ELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           L+P  I + N L     Q + L   VA   E++ SE   + ++  Y+ ++  H +    +
Sbjct: 289 LRPDAITY-NTLISACSQGSNLDDAVAVFEEMIASE--CRPDLWTYNAMVSVHGRCGKAQ 345

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           +AE + K++ E G  PD VT   L++ ++K G+++R +   E L   GF+ D   YN+MI
Sbjct: 346 EAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMI 405

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
             Y   G+  L + L D M   G       Y  L+ S  +   +  AG++   M     +
Sbjct: 406 HMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLK 465

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           PTL + + L+ AY ++G  D A   FD M+  G KPD      M+  + + +   K + L
Sbjct: 466 PTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDETRKLMVL 525

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKI 504
              + KDG++P    Y VL+  L +    +E E ++  +  + E  P  I
Sbjct: 526 YRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDMEAVFEMNPLVI 575



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 132/269 (49%), Gaps = 2/269 (0%)

Query: 255 TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR--AK 312
             V+ ++ ++  +A+    +DA ++L  M +  I PD+V+   L++  +K+G L    A 
Sbjct: 219 ATVQVFNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVAL 278

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           E    +R  G +PD   YN++I A          +++ + MI S        Y A++   
Sbjct: 279 ELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVH 338

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            +CG  + A  +   +  + FQP   +   L+ A+ + GD ++     + +++ G + D 
Sbjct: 339 GRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDG 398

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               +MI  YGK   LD AL L  E+   G  P   TYTVLVD LG++  I+EA ++L +
Sbjct: 399 ITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEE 458

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKA 521
           +++ G  P      +L   YA++G +  A
Sbjct: 459 MADAGLKPTLVTFSALICAYAKSGRQDDA 487



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 60/287 (20%), Positives = 120/287 (41%), Gaps = 35/287 (12%)

Query: 253  FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
            +  N+  Y  +I          D E ++ +M   G  PD+V    L+ MY+  GN DR  
Sbjct: 883  YLPNMHLYRIMISLLCHNKRFRDVELMVAEMEGAGFKPDLVVLNTLLLMYTGTGNFDRTI 942

Query: 313  EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV---------------------- 350
            E + S+   G +PD+  YN++I+ Y    +P+ G +L+                      
Sbjct: 943  EVYHSILEAGLEPDEDTYNTLIVMYSRNFRPEEGFTLLYEMGKRGLTPKLESYKILLAAS 1002

Query: 351  -------------DMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
                         + M T G   +  IY  +++ +    +   A  + + M+ +  +PT+
Sbjct: 1003 GKAKLWEQADLLFEEMRTKGYRLNRSIYHMMMKIYRNARNHSKAEHLLSAMKEDGIEPTI 1062

Query: 398  ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
             +  +L+ +YG +G PD+A    + +     +      ++++ AY +       +  LLE
Sbjct: 1063 ATMHILMTSYGTSGHPDEAEKVLNSLKSSNLEISTLPYSTVLDAYLRNRDYSLGITKLLE 1122

Query: 458  LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKI 504
            +++DG EP    +T  +      +  ++A  LL  + + G   P ++
Sbjct: 1123 MKRDGVEPDHQVWTSFIRAASLCEQTDDAILLLKSLQDCGFDLPIRL 1169



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 71/337 (21%), Positives = 133/337 (39%), Gaps = 54/337 (16%)

Query: 263  LIDAHAKENCLEDAERILKKM-NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSH 321
            +I+A+ K    + AE  +K +  E+G+  D      L+H Y+++G  + A+  F+ +   
Sbjct: 754  MIEAYGKLKLWQQAENFVKGLKQESGV--DRRIWNALIHAYAESGLYEHARAIFDIMIKK 811

Query: 322  GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV--- 378
            G  P  +  N M+ A +  G+      +V  +    I+ S+   L +L +FA+ GDV   
Sbjct: 812  GPLPTVESVNGMMRALIVDGRLDELYVVVQELQDLDIKISKSTVLLMLEAFAKAGDVFEV 871

Query: 379  -------RGAGQITNI-------------------------MRIEEFQPTLESCTLLVEA 406
                   + AG + N+                         M    F+P L     L+  
Sbjct: 872  MKIYNGMKAAGYLPNMHLYRIMISLLCHNKRFRDVELMVAEMEGAGFKPDLVVLNTLLLM 931

Query: 407  YGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG 466
            Y   G+ D+    +  ++  G +PD+    ++I  Y +    ++   LL E+ K G  P 
Sbjct: 932  YTGTGNFDRTIEVYHSILEAGLEPDEDTYNTLIVMYSRNFRPEEGFTLLYEMGKRGLTPK 991

Query: 467  PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA----------- 515
              +Y +L+   G+ +L  +A+ L  ++   G      I   +  +Y  A           
Sbjct: 992  LESYKILLAASGKAKLWEQADLLFEEMRTKGYRLNRSIYHMMMKIYRNARNHSKAEHLLS 1051

Query: 516  -----GIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
                 GIE         + +      PD+ E+++N L
Sbjct: 1052 AMKEDGIEPTIATMHILMTSYGTSGHPDEAEKVLNSL 1088


>gi|115466932|ref|NP_001057065.1| Os06g0199100 [Oryza sativa Japonica Group]
 gi|51091829|dbj|BAD36643.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113595105|dbj|BAF18979.1| Os06g0199100 [Oryza sativa Japonica Group]
          Length = 1283

 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 137/290 (47%), Gaps = 6/290 (2%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVA---ELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           L+P  I + N L     Q + L   VA   E++ SE   + ++  Y+ ++  H +    +
Sbjct: 129 LRPDAITY-NTLISACSQGSNLDDAVAVFEEMIASE--CRPDLWTYNAMVSVHGRCGKAQ 185

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           +AE + K++ E G  PD VT   L++ ++K G+++R +   E L   GF+ D   YN+MI
Sbjct: 186 EAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMI 245

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
             Y   G+  L + L D M   G       Y  L+ S  +   +  AG++   M     +
Sbjct: 246 HMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLK 305

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           PTL + + L+ AY ++G  D A   FD M+  G KPD      M+  + + +   K + L
Sbjct: 306 PTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDETRKLMVL 365

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKI 504
              + KDG++P    Y VL+  L +    +E E ++  +  + E  P  I
Sbjct: 366 YRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDMEAVFEMNPLVI 415



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 132/268 (49%), Gaps = 2/268 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR--AKE 313
            V+ ++ ++  +A+    +DA ++L  M +  I PD+V+   L++  +K+G L    A E
Sbjct: 60  TVQVFNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVALE 119

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
               +R  G +PD   YN++I A          +++ + MI S        Y A++    
Sbjct: 120 LLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVHG 179

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           +CG  + A  +   +  + FQP   +   L+ A+ + GD ++     + +++ G + D  
Sbjct: 180 RCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGI 239

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
              +MI  YGK   LD AL L  E+   G  P   TYTVLVD LG++  I+EA ++L ++
Sbjct: 240 TYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEM 299

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKA 521
           ++ G  P      +L   YA++G +  A
Sbjct: 300 ADAGLKPTLVTFSALICAYAKSGRQDDA 327



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/287 (20%), Positives = 121/287 (42%), Gaps = 35/287 (12%)

Query: 253  FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
            +  N+  Y  +I          D E ++ +M   G  PD+V    L+ MY+  GN DR  
Sbjct: 723  YLPNMHLYRIMISLLCHNKRFRDVELMVAEMEGAGFKPDLVVLNTLLLMYTGTGNFDRTI 782

Query: 313  EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV---------------------- 350
            E + S+   G +PD+  YN++I+ Y    +P+ G +L+                      
Sbjct: 783  EVYHSILEAGLEPDEDTYNTLIVMYSRNFRPEEGFTLLYEMGKRGLTPKLESYKILLAAS 842

Query: 351  ---------DMMI----TSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
                     D++     T G   +  IY  +++ +    +   A  + + M+ +  +PT+
Sbjct: 843  GKAKLWEQADLLFEEMRTKGYRLNRSIYHMMMKIYRNARNHSKAEHLLSAMKEDGIEPTI 902

Query: 398  ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
             +  +L+ +YG +G PD+A    + +     +      ++++ AY +       +  LLE
Sbjct: 903  ATMHILMTSYGTSGHPDEAEKVLNSLKSSNLEISTLPYSTVLDAYLRNRDYSLGITKLLE 962

Query: 458  LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKI 504
            +++DG EP    +T  +      +  ++A  LL  + + G   P ++
Sbjct: 963  MKRDGVEPDHQVWTSFIRAASLCEQTDDAILLLKSLQDCGFDLPIRL 1009



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 71/337 (21%), Positives = 133/337 (39%), Gaps = 54/337 (16%)

Query: 263 LIDAHAKENCLEDAERILKKM-NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSH 321
           +I+A+ K    + AE  +K +  E+G+  D      L+H Y+++G  + A+  F+ +   
Sbjct: 594 MIEAYGKLKLWQQAENFVKGLKQESGV--DRRIWNALIHAYAESGLYEHARAIFDIMIKK 651

Query: 322 GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV--- 378
           G  P  +  N M+ A +  G+      +V  +    I+ S+   L +L +FA+ GDV   
Sbjct: 652 GPLPTVESVNGMMRALIVDGRLDELYVVVQELQDLDIKISKSTVLLMLEAFAKAGDVFEV 711

Query: 379 -------RGAGQITNI-------------------------MRIEEFQPTLESCTLLVEA 406
                  + AG + N+                         M    F+P L     L+  
Sbjct: 712 MKIYNGMKAAGYLPNMHLYRIMISLLCHNKRFRDVELMVAEMEGAGFKPDLVVLNTLLLM 771

Query: 407 YGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG 466
           Y   G+ D+    +  ++  G +PD+    ++I  Y +    ++   LL E+ K G  P 
Sbjct: 772 YTGTGNFDRTIEVYHSILEAGLEPDEDTYNTLIVMYSRNFRPEEGFTLLYEMGKRGLTPK 831

Query: 467 PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA----------- 515
             +Y +L+   G+ +L  +A+ L  ++   G      I   +  +Y  A           
Sbjct: 832 LESYKILLAASGKAKLWEQADLLFEEMRTKGYRLNRSIYHMMMKIYRNARNHSKAEHLLS 891

Query: 516 -----GIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
                GIE         + +      PD+ E+++N L
Sbjct: 892 AMKEDGIEPTIATMHILMTSYGTSGHPDEAEKVLNSL 928



 Score = 43.9 bits (102), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 57/271 (21%), Positives = 108/271 (39%), Gaps = 31/271 (11%)

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A + F  ++  G  P +K+Y S+I      G P+    L+D    S      +I L +L 
Sbjct: 536 ACQVFCDMQFLGIVPSQKIYQSIIYTCCRLGFPETAYQLMDDAARS------DISLNILS 589

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLES--------CTLLVEAYGQAGDPDQARSNFDY 422
              +   +   G++    + E F   L+            L+ AY ++G  + AR+ FD 
Sbjct: 590 --CRVAMIEAYGKLKLWQQAENFVKGLKQESGVDRRIWNALIHAYAESGLYEHARAIFDI 647

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
           MI+ G  P       M+ A      LD+   ++ EL+    +   +T  ++++   +   
Sbjct: 648 MIKKGPLPTVESVNGMMRALIVDGRLDELYVVVQELQDLDIKISKSTVLLMLEAFAKAGD 707

Query: 483 INEAEQLLGKISELGEAPP---FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD 539
           + E  ++   +   G  P    ++I +SL           K  + +  + A+ E  G   
Sbjct: 708 VFEVMKIYNGMKAAGYLPNMHLYRIMISLL-------CHNKRFRDVELMVAEMEGAGFKP 760

Query: 540 FERIINGLL-----AGGFLQDAQRVHGLMEA 565
              ++N LL      G F +  +  H ++EA
Sbjct: 761 DLVVLNTLLLMYTGTGNFDRTIEVYHSILEA 791


>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
          Length = 2021

 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/381 (24%), Positives = 167/381 (43%), Gaps = 21/381 (5%)

Query: 194 ITDKILSLEKEEDPSPLLAEWKELLQPSRI-DWINLLDRLREQNTQLYFKVAELVLSEES 252
           +  KIL L  + DP+      + L    +I + ++L D++                 +E 
Sbjct: 122 VLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKM----------------IDEG 165

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           FQ NV  Y  LI+   K      A R+L+ M +    PD+V  T ++    K   +  A 
Sbjct: 166 FQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAF 225

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
             F  +   G  PD   Y S++ A  N  + K   +L++ M+ S I     I+  ++ + 
Sbjct: 226 NLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDAL 285

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + G V  A +I ++M     +P + + T L++ +    + D+A   FD M+R G  PD 
Sbjct: 286 CKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDV 345

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               ++I  Y K + +DKA+ L  E+ +  + P   TY  L+  L  +  + +A  L  +
Sbjct: 346 ISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHE 405

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAG 550
           +   G+ P       L D   +    ++A+  L  +EA    + PD   +  II+G+   
Sbjct: 406 MVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEA--SNLNPDIQVYNIIIDGMCRA 463

Query: 551 GFLQDAQRVHGLMEAQGFAAS 571
           G L+ A+ +   + ++G   S
Sbjct: 464 GELEAARDLFSNLSSKGLHPS 484



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 153/353 (43%), Gaps = 4/353 (1%)

Query: 216 ELLQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           E  QP+ + +  L++ L +  NT    ++    + + + Q +V  Y+ +ID+  K+  + 
Sbjct: 164 EGFQPNVVTYGTLINGLCKVGNTSAAIRLLR-SMEQGNCQPDVVIYTSIIDSLCKDRQVT 222

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           +A  +  +M   GI PDI T T LVH                 + +    PD  ++++++
Sbjct: 223 EAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVV 282

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
            A    G+      +VDMMI  G+E     Y  L+       ++  A ++ ++M  + F 
Sbjct: 283 DALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFA 342

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P + S T L+  Y +    D+A   F+ M R    PD +   +++        L  A+ L
Sbjct: 343 PDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIAL 402

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
             E+   G  P   TY++L+D L + + + EA  LL  I      P  ++   + D   R
Sbjct: 403 FHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCR 462

Query: 515 AGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
           AG  + A      L +K        +  +I+GL   G L +A ++   ME  G
Sbjct: 463 AGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKL--FMEMDG 513



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 105/227 (46%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++ +   + +V  Y+ L+D H  ++ +++A ++   M   G  PD+++ T L++ Y K  
Sbjct: 300 MMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIH 359

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            +D+A   FE +    + PD K YN+++    + G+ +  ++L   M+  G       Y 
Sbjct: 360 KIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYS 419

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            LL S  +   +  A  +   +      P ++   ++++   +AG+ + AR  F  +   
Sbjct: 420 ILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSK 479

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVL 473
           G  P       MI    K+ LL++A  L +E++ +   P   TY  +
Sbjct: 480 GLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTI 526



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 149/352 (42%), Gaps = 8/352 (2%)

Query: 220 PSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQT--NVRDYSKLIDAHAKENCLEDAE 277
           PS +D+  LL  + +   + Y  V  L    +SF    NV   + LI++    N +  A 
Sbjct: 63  PSIVDFAKLLTSIAKM--KHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAF 120

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
            +L K+ + G  PD  T T L+      G +  A   F+ +   GFQP+   Y ++I   
Sbjct: 121 SVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGL 180

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
              G     + L+  M     +    IY +++ S  +   V  A  + + M  +   P +
Sbjct: 181 CKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDI 240

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
            + T LV A     +     +  + M+     PD    ++++ A  K+  + +A  ++  
Sbjct: 241 FTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDM 300

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI 517
           + + G EP   TYT L+D       ++EA ++   +   G AP      +L + Y +   
Sbjct: 301 MIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHK 360

Query: 518 EKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQG 567
             KA+    F E  +++  PD   +  ++ GL   G LQDA  +   M A+G
Sbjct: 361 IDKAMYL--FEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARG 410



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/314 (19%), Positives = 116/314 (36%), Gaps = 35/314 (11%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           ++ D++KL+ + AK         +  +M+  G+ P++ T  +L++ +     +  A    
Sbjct: 64  SIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSVL 123

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G QPD   + ++I      G+    + L D MI  G                  
Sbjct: 124 AKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEG------------------ 165

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
                            FQP + +   L+    + G+   A      M +   +PD    
Sbjct: 166 -----------------FQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIY 208

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            S+I +  K   + +A NL  ++   G  P   TYT LV  L  L        LL ++  
Sbjct: 209 TSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVN 268

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
               P   I  ++ D   + G   +A + +  +  +  +     +  +++G      + +
Sbjct: 269 SKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDE 328

Query: 556 AQRVHGLMEAQGFA 569
           A +V  +M  +GFA
Sbjct: 329 AVKVFDMMVRKGFA 342



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/218 (20%), Positives = 97/218 (44%), Gaps = 2/218 (0%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++  + F  +V  Y+ LI+ + K + ++ A  + ++M     +PD  T   L++     G
Sbjct: 335 MMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVG 394

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            L  A   F  + + G  PD   Y+ ++ +       +  M+L+  +  S +    ++Y 
Sbjct: 395 RLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYN 454

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            ++    + G++  A  + + +  +   P++ +  +++    + G  ++A   F  M   
Sbjct: 455 IIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGN 514

Query: 427 GHKPDDRCTASMIA-AYGKKNLLDKALNLLLELEKDGF 463
              PD  CT + IA  + + N   +A+ LL E+   GF
Sbjct: 515 DCSPDG-CTYNTIARGFLQNNETLRAIQLLEEMLARGF 551


>gi|242067341|ref|XP_002448947.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
 gi|241934790|gb|EES07935.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
          Length = 797

 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 145/314 (46%), Gaps = 4/314 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ +I+    E  ++ A  +  +M + GI P++VT T ++    KA  +DRA+  F
Sbjct: 202 NVVSYATVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVF 261

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + +   G +PD   YN +I  Y++ G+ K  + +++ M   G++     Y +LL      
Sbjct: 262 QQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNN 321

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G  R A    + M  +  +P +    +L+  Y   G   +     + M+  G  PD    
Sbjct: 322 GRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIF 381

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +  AY KK ++D+A+++  ++++ G  P    +  L+D L +L  +++A     ++  
Sbjct: 382 NIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQMMN 441

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFL 553
            G AP   +  SL  +Y    ++K       + E   + + PD   F  I+  L   G +
Sbjct: 442 EGVAPNIFVFNSL--VYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQV 499

Query: 554 QDAQRVHGLMEAQG 567
             AQR+  LME  G
Sbjct: 500 MKAQRLIDLMERVG 513



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 69/310 (22%), Positives = 138/310 (44%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++ +  A+AK+  +++A  I  KM + G+ PD+V    L+    K G +D A   F  + 
Sbjct: 381 FNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQMM 440

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G  P+  V+NS++       + +        M+  GI      +  +L +    G V 
Sbjct: 441 NEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVM 500

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++ ++M     +P + S T L+  +   G  D+A  + D M+ +G KPD+    +++
Sbjct: 501 KAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLL 560

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             Y +   +D A  +  E+ ++G  PG  TY+ ++  L   +  +EA++L   +   G+ 
Sbjct: 561 HGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQ 620

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
               I   + +  ++     +A +    L +K  Q+    F  +I  L   G  +DA  +
Sbjct: 621 WNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHL 680

Query: 560 HGLMEAQGFA 569
              + + G  
Sbjct: 681 FATISSYGLV 690



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/334 (21%), Positives = 129/334 (38%), Gaps = 15/334 (4%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +S    + +   Y  L++         +A      M   GI P++    +L+H Y+  G 
Sbjct: 299 MSAHGLKPDCYTYGSLLNYLCNNGRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGA 358

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L    +    +  +G  PD  ++N +  AY         M + + M   G+      + A
Sbjct: 359 LSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGA 418

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+ +  + G V  A    N M  E   P +     LV         ++A+  +  M+  G
Sbjct: 419 LIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQG 478

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            +PD     +++     K  + KA  L+  +E+ G  P   +YT L+     +  I+EA 
Sbjct: 479 IRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAA 538

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
           + L  +  +G  P      +L   Y RAG    A     F E  +  + P          
Sbjct: 539 KSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGV--FREMLRNGITP---------- 586

Query: 548 LAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
              G +  +  +HGL   + F+ ++ L + +I+S
Sbjct: 587 ---GVVTYSTILHGLFTTRRFSEAKELYLNMITS 617



 Score = 47.0 bits (110), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 69/148 (46%), Gaps = 2/148 (1%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           Q N+  Y+ +++  +K NC+++A ++ + +       +I T  +++    K+G  + A  
Sbjct: 620 QWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMH 679

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            F ++ S+G  PD   Y  +    +  G  +    L   M  SG   +  +  AL+R   
Sbjct: 680 LFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLNALVRRLL 739

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCT 401
             GD+  AG    + +++E   +LE+ T
Sbjct: 740 HRGDITRAGAY--LSKLDEKNFSLEAST 765


>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 652

 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 142/314 (45%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           Q NV  Y+ +ID+  K   + +A  +  +M   GI PD+VT + L+  +   G L+ A +
Sbjct: 222 QPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAID 281

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            F  +     +PD   +N ++ A+   G+ K G ++ DMM+  GI+ +   Y +L+  + 
Sbjct: 282 LFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYC 341

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
              +V  A  I N M      P ++S ++++  + +    D+A + F  M R    PD  
Sbjct: 342 LVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVV 401

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
             +S+I    K   +  AL L+ ++   G  P   TY  ++D L ++  +++A  LL K+
Sbjct: 402 TYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKL 461

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFL 553
            + G  P       L     ++G  + A +    L  K   +  D +  +I G    G  
Sbjct: 462 KDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEGLF 521

Query: 554 QDAQRVHGLMEAQG 567
            +A  +   ME  G
Sbjct: 522 NEALALLSKMEDNG 535



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 122/254 (48%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++ ++  + N   Y+ L+D +     +  A+ I   M + G+ PDI + +++++ + K  
Sbjct: 320 MMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIK 379

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
             D A   F+ +      PD   Y+S+I     +G+    + LVD M   G+  +   Y 
Sbjct: 380 KFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYN 439

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           ++L +  +   V  A  +   ++ +  QP + + ++L++   Q+G  + AR  F+ ++  
Sbjct: 440 SILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVK 499

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           GH  +      MI  +  + L ++AL LL ++E +G  P   TY +++  L +    + A
Sbjct: 500 GHNLNVDTYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMA 559

Query: 487 EQLLGKISELGEAP 500
           E+LL ++   G  P
Sbjct: 560 EKLLREMIARGVRP 573



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 94/425 (22%), Positives = 166/425 (39%), Gaps = 89/425 (20%)

Query: 224 DWINLLDRLREQNTQL----YFKVAELVLSEESFQT---------------NVRDYSKLI 264
           D ++L +RL  +NT      + K+   ++  + + T               N+ + + LI
Sbjct: 68  DAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILI 127

Query: 265 DAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQ 324
           +   +   +  A  +  K+ + G VPD +T T L+      G + +A    + + + GF 
Sbjct: 128 NCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLCLKGQIQQAFLFHDKVVALGFH 187

Query: 325 PDKKVYNSMIMAYVNAG-----------------QPKLGM--SLVDMM------------ 353
            D+  Y ++I      G                 QP + M  +++D M            
Sbjct: 188 FDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDL 247

Query: 354 ----ITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409
               I+ GI      Y AL+  F   G +  A  + N M +E  +P + +  +LV A+ +
Sbjct: 248 FSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCK 307

Query: 410 AGDPDQARSNFDYMIRLGHKP---------DDRCTAS----------------------- 437
            G   + ++ FD M++ G KP         D  C                          
Sbjct: 308 DGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQS 367

Query: 438 ---MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
              MI  + K    D+A+NL  E+ +    P   TY+ L+D L +   I+ A QL+ ++ 
Sbjct: 368 YSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMH 427

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQ 554
           + G  P  +   S+ D   +     KA+  L  L+ K  Q     +  +I GL   G L+
Sbjct: 428 DRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLE 487

Query: 555 DAQRV 559
           DA++V
Sbjct: 488 DARKV 492



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 87/188 (46%), Gaps = 13/188 (6%)

Query: 187 ITGKCKLIT-DKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAE 245
           I G CK+   D+ ++L KE     ++        P  + + +L+D L +     Y    +
Sbjct: 372 INGFCKIKKFDEAMNLFKEMHRKNII--------PDVVTYSSLIDGLSKSGRISY--ALQ 421

Query: 246 LV--LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS 303
           LV  + +      +R Y+ ++DA  K + ++ A  +L K+ + GI P++ T ++L+    
Sbjct: 422 LVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLC 481

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363
           ++G L+ A++ FE L   G   +   Y  MI  +   G     ++L+  M  +G     +
Sbjct: 482 QSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAK 541

Query: 364 IYLALLRS 371
            Y  ++ S
Sbjct: 542 TYEIIILS 549


>gi|242092708|ref|XP_002436844.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
 gi|241915067|gb|EER88211.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
          Length = 755

 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/320 (26%), Positives = 150/320 (46%), Gaps = 4/320 (1%)

Query: 246 LVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKA 305
           L +SE     +V  Y+ +I+   +E  +E A  +  +M + GI P++VT T ++    KA
Sbjct: 150 LRMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEMMDQGIPPNVVTYTTVIDGLCKA 209

Query: 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
             +DRAK  F+ +   G +PD   YN +I  Y++ G+ K  + +++ M T G+E     Y
Sbjct: 210 QVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEPDCITY 269

Query: 366 LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
             LL    + G  R A    + M  +  +P +    +L+  Y   G   +  S  D M+ 
Sbjct: 270 ALLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMHSFLDLMVG 329

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
            G  P+ R    M  AY KK ++++A+++  ++ + G  P   ++  L+D L +L  +++
Sbjct: 330 NGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRVDD 389

Query: 486 AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERI 543
           A     ++   G  P   +  SL       G  +KA +   F E   + +  D   F  +
Sbjct: 390 AVLQFNQMINEGVTPNIFVFSSLVYGLCTVGKWEKAEEL--FFEVLDQGICVDAVFFNTL 447

Query: 544 INGLLAGGFLQDAQRVHGLM 563
           +  L   G + +AQR+  LM
Sbjct: 448 MCNLCNEGRVMEAQRLIDLM 467



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 105/437 (24%), Positives = 179/437 (40%), Gaps = 34/437 (7%)

Query: 148 HGKIKYKIYGLDLSDPKWTEVAEKIHERGEMILPEEPKPIT-----------GKCK---L 193
           +G     I+G  LS  KW EV + + E     L  EP  IT           G+C+   L
Sbjct: 231 NGTYNCLIHGY-LSTGKWKEVVQMLEEMSTHGL--EPDCITYALLLDYLCKNGRCREARL 287

Query: 194 ITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESF 253
             D +      +   P +A +  LL             L E ++ L   V   V      
Sbjct: 288 FFDSMF----RKGIKPDVAIYAILLHGYATK-----GALSEMHSFLDLMVGNGV------ 332

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
             N R ++ +  A+AK+  +E+A  I  KM + G+ PD+V+   L+    K G +D A  
Sbjct: 333 SPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRVDDAVL 392

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            F  + + G  P+  V++S++      G+ +    L   ++  GI      +  L+ +  
Sbjct: 393 QFNQMINEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDAVFFNTLMCNLC 452

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
             G V  A ++ ++M     +P + S   LV  +   G  D+A    D M+  G KP++ 
Sbjct: 453 NEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEF 512

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL-LGK 492
               ++  Y K   +D A +L  E+   G  P  ATY  ++  L +    +EA +L L  
Sbjct: 513 TYTILLRGYCKARRVDDAYSLFREMLMKGVTPVVATYNTILHGLFQTGRFSEANELYLNM 572

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
           I+   +   +   + L +   +     +A +    L +K  Q+    F  +I  LL GG 
Sbjct: 573 INSRTKCDIYTYNIIL-NGLCKNNFVDEAFKMFRRLCSKDPQLDSVTFNIMIGALLKGGR 631

Query: 553 LQDAQRVHGLMEAQGFA 569
            +DA  +   + A G  
Sbjct: 632 KEDAMDLFATISAYGLV 648



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 149/350 (42%), Gaps = 32/350 (9%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI  +      ++  ++L++M+ +G+ PD +T  +L+    K G    A+  F+S+ 
Sbjct: 234 YNCLIHGYLSTGKWKEVVQMLEEMSTHGLEPDCITYALLLDYLCKNGRCREARLFFDSMF 293

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +PD  +Y  ++  Y   G      S +D+M+ +G+  +  I+  +  ++A+   + 
Sbjct: 294 RKGIKPDVAIYAILLHGYATKGALSEMHSFLDLMVGNGVSPNRRIFNIMFCAYAKKAMIE 353

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  I N MR +   P + S   L++A  + G  D A   F+ MI  G  P+    +S++
Sbjct: 354 EAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRVDDAVLQFNQMINEGVTPNIFVFSSLV 413

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
                    +KA  L  E+   G       +  L+  L     + EA++L+  +  +G  
Sbjct: 414 YGLCTVGKWEKAEELFFEVLDQGICVDAVFFNTLMCNLCNEGRVMEAQRLIDLMIRVGVR 473

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P      +L   +   G   +A + L  + +    + P++F   I   L  G+ + A+RV
Sbjct: 474 PNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNG--LKPNEFTYTI---LLRGYCK-ARRV 527

Query: 560 --------------------------HGLMEAQGFAASERLKVALISSQT 583
                                     HGL +   F+ +  L + +I+S+T
Sbjct: 528 DDAYSLFREMLMKGVTPVVATYNTILHGLFQTGRFSEANELYLNMINSRT 577



 Score = 42.7 bits (99), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 51/236 (21%), Positives = 101/236 (42%), Gaps = 19/236 (8%)

Query: 189 GKCKLI-TDKILSLEKE---EDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVA 244
           G CK    D   SL +E   +  +P++A +  +L       +    R  E N +LY    
Sbjct: 520 GYCKARRVDDAYSLFREMLMKGVTPVVATYNTILH-----GLFQTGRFSEAN-ELY---- 569

Query: 245 ELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK 304
            L +     + ++  Y+ +++   K N +++A ++ +++       D VT  +++    K
Sbjct: 570 -LNMINSRTKCDIYTYNIILNGLCKNNFVDEAFKMFRRLCSKDPQLDSVTFNIMIGALLK 628

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
            G  + A + F ++ ++G  PD   Y  +    +  G       L   M  SG   +  +
Sbjct: 629 GGRKEDAMDLFATISAYGLVPDVVTYRLIAENLIEEGSLGEFDGLFSAMEKSGTAPNSHM 688

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCT--LLVEAYGQAGDPDQARS 418
             AL+R     GD+  AG    + +++E   +LE+ T  +L+  Y +      A+S
Sbjct: 689 LNALVRRLLHRGDISRAG--VYLYKLDEKNFSLEASTTSMLISLYSRGEYQPHAKS 742


>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 744

 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 166/378 (43%), Gaps = 21/378 (5%)

Query: 197 KILSLEKEEDPSPLLAEWKELLQPSRI-DWINLLDRLREQNTQLYFKVAELVLSEESFQT 255
           KIL L  + DP+      + L    +I + ++L D++                 +E FQ 
Sbjct: 116 KILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKM----------------IDEGFQP 159

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y  LI+   K      A R+L+ M +    PD+V  T ++    K   +  A   F
Sbjct: 160 NVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLF 219

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G  PD   Y S++ A  N  + K   +L++ M+ S I     I+  ++ +  + 
Sbjct: 220 SQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKE 279

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G V  A +I ++M     +P + + T L++ +    + D+A   FD M+R G  PD    
Sbjct: 280 GKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISY 339

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I  Y K + +DKA+ L  E+ +  + P   TY  L+  L  +  + +A  L  ++  
Sbjct: 340 TTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVA 399

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFL 553
            G+ P       L D   +    ++A+  L  +EA    + PD   +  II+G+   G L
Sbjct: 400 RGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEA--SNLNPDIQVYNIIIDGMCRAGEL 457

Query: 554 QDAQRVHGLMEAQGFAAS 571
           + A+ +   + ++G   S
Sbjct: 458 EAARDLFSNLSSKGLHPS 475



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 152/353 (43%), Gaps = 4/353 (1%)

Query: 216 ELLQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           E  QP+ + +  L++ L +  NT    ++    + + + Q +V  Y+ +ID+  K+  + 
Sbjct: 155 EGFQPNVVTYGTLINGLCKVGNTSAAIRLLR-SMEQGNCQPDVVIYTSIIDSLCKDRQVT 213

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           +A  +  +M   GI PDI T T LVH                 + +    PD  ++++++
Sbjct: 214 EAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVV 273

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
            A    G+      +VDMMI  G+E     Y  L+       ++  A ++ ++M  + F 
Sbjct: 274 DALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFA 333

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P + S T L+  Y +    D+A   F+ M R    PD +   +++        L  A+ L
Sbjct: 334 PDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIAL 393

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
             E+   G  P   TY++L+D L +   + EA  LL  I      P  ++   + D   R
Sbjct: 394 FHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCR 453

Query: 515 AGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
           AG  + A      L +K        +  +I+GL   G L +A ++   ME  G
Sbjct: 454 AGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKL--FMEMDG 504



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/323 (20%), Positives = 142/323 (43%), Gaps = 13/323 (4%)

Query: 211 LAEWKEL-----------LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVR 258
           L EWK +           + P  + +  ++D L +E       ++ ++++ +   + +V 
Sbjct: 244 LCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMI-QRGVEPDVV 302

Query: 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318
            Y+ L+D H  ++ +++A ++   M   G  PD+++ T L++ Y K   +D+A   FE +
Sbjct: 303 TYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEM 362

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
               + PD K YN+++    + G+ +  ++L   M+  G       Y  LL S  +   +
Sbjct: 363 CRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHL 422

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             A  +   +      P ++   ++++   +AG+ + AR  F  +   G  P       M
Sbjct: 423 EEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIM 482

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           I    K+ LL++A  L +E++ +   P   TY  +     +      A QLL ++   G 
Sbjct: 483 IHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGF 542

Query: 499 APPFKIQVSLCDMYARAGIEKKA 521
           +        L +M +  G+++ +
Sbjct: 543 SADVSTTTLLVEMLSDDGLDQSS 565



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 155/365 (42%), Gaps = 12/365 (3%)

Query: 211 LAEWKELLQ----PSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQT--NVRDYSKLI 264
           L+ +  LL     PS +D+  LL  + +   + Y  V  L    +SF    NV   + LI
Sbjct: 41  LSSFNRLLHMHPPPSIVDFAKLLTSIAKM--KHYSTVLSLSTQMDSFGVPPNVYTLNILI 98

Query: 265 DAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQ 324
           ++    N +  A  +L K+ + G  PD  T T L+      G +  A   F+ +   GFQ
Sbjct: 99  NSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQ 158

Query: 325 PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQI 384
           P+   Y ++I      G     + L+  M     +    IY +++ S  +   V  A  +
Sbjct: 159 PNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNL 218

Query: 385 TNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGK 444
            + M  +   P + + T LV A     +     +  + M+     PD    ++++ A  K
Sbjct: 219 FSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCK 278

Query: 445 KNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKI 504
           +  + +A  ++  + + G EP   TYT L+D       ++EA ++   +   G AP    
Sbjct: 279 EGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVIS 338

Query: 505 QVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGL 562
             +L + Y +     KA+    F E  +++  PD   +  +++GL   G LQDA  +   
Sbjct: 339 YTTLINGYCKIHKIDKAMYL--FEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHE 396

Query: 563 MEAQG 567
           M A+G
Sbjct: 397 MVARG 401



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/314 (19%), Positives = 116/314 (36%), Gaps = 35/314 (11%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           ++ D++KL+ + AK         +  +M+  G+ P++ T  +L++ +     +  A    
Sbjct: 55  SIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSVL 114

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G QPD   + ++I      G+    + L D MI  G                  
Sbjct: 115 AKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEG------------------ 156

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
                            FQP + +   L+    + G+   A      M +   +PD    
Sbjct: 157 -----------------FQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIY 199

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            S+I +  K   + +A NL  ++   G  P   TYT LV  L  L        LL ++  
Sbjct: 200 TSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVN 259

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
               P   I  ++ D   + G   +A + +  +  +  +     +  +++G      + +
Sbjct: 260 SKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDE 319

Query: 556 AQRVHGLMEAQGFA 569
           A +V  +M  +GFA
Sbjct: 320 AVKVFDMMVRKGFA 333


>gi|449487696|ref|XP_004157755.1| PREDICTED: uncharacterized protein LOC101223774 [Cucumis sativus]
          Length = 1315

 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 130/279 (46%)

Query: 237  TQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTST 296
            T+  F++   ++  ++++ NV  Y+ +I  + KE  L  AE + ++M E G+VP+  T T
Sbjct: 952  TERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYT 1011

Query: 297  VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
             L+  + KAGN  +A E  E + + GF P+   YNS++      G+ +    L++    +
Sbjct: 1012 TLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQN 1071

Query: 357  GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
             IE     Y  L+    +  D+  A    N M    FQP +   T L+ A+ +      +
Sbjct: 1072 QIEADGVTYTILISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDS 1131

Query: 417  RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476
               FD +I+LG  P      SMI  Y ++  +  A+    ++   G  P   +Y  L+  
Sbjct: 1132 EKLFDEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISG 1191

Query: 477  LGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
            L +   ++EA QL   + + G +P    +V+L   Y + 
Sbjct: 1192 LCKESRLDEARQLYDTMIDKGLSPCEVTRVTLTYEYCKT 1230



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 159/344 (46%), Gaps = 12/344 (3%)

Query: 239  LYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVL 298
             + KV ++ LS      N+ +YS +I    K   ++ A  +L++M +NG  P++ T T L
Sbjct: 888  FFHKVTKMGLSP-----NLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSL 942

Query: 299  VHMYSKAGNLDRAKEAFESL-RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG 357
            +H   K G  +RA   F  L RS  ++P+   Y +MI  Y    +      L + M   G
Sbjct: 943  IHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQG 1002

Query: 358  IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
            +  +   Y  L+    + G+   A ++  +M  E F P   +   +V+   + G  ++A 
Sbjct: 1003 LVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAF 1062

Query: 418  SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
               +   +   + D      +I+   K+  +++AL  L ++ K GF+P    YT L+   
Sbjct: 1063 KLLNTGFQNQIEADGVTYTILISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAF 1122

Query: 478  GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ-MG 536
             R  ++ ++E+L  ++ +LG AP  +   S+   Y R   EKK   A+ F +   +    
Sbjct: 1123 CRQNMMKDSEKLFDEVIKLGLAPTKETYTSMICGYCR---EKKVSLAVKFFQKMSDHGCA 1179

Query: 537  PD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVAL 578
            PD   +  +I+GL     L +A++++  M  +G +  E  +V L
Sbjct: 1180 PDSISYGALISGLCKESRLDEARQLYDTMIDKGLSPCEVTRVTL 1223



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/325 (21%), Positives = 140/325 (43%), Gaps = 9/325 (2%)

Query: 260  YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
            Y  +I  + +   + +A+R + +M E G V D  T T+++  + +   ++RA   F  + 
Sbjct: 834  YKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVNRAVWFFHKVT 893

Query: 320  SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
              G  P+   Y+SMI      G  K    L++ M+ +G + +   + +L+    + G   
Sbjct: 894  KMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTE 953

Query: 380  GAGQI-TNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             A ++   ++R + ++P + + T ++  Y +     +A   F+ M   G  P+     ++
Sbjct: 954  RAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTL 1013

Query: 439  IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK-ISELG 497
            I  + K     KA  L+  +  +GF P   TY  +VD L +     EA +LL        
Sbjct: 1014 IDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQI 1073

Query: 498  EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK-KEQMGPDD--FERIINGLLAGGFLQ 554
            EA      + + +   RA +     QAL FL    K    PD   +  +I        ++
Sbjct: 1074 EADGVTYTILISEQCKRADMN----QALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMK 1129

Query: 555  DAQRVHGLMEAQGFAASERLKVALI 579
            D++++   +   G A ++    ++I
Sbjct: 1130 DSEKLFDEVIKLGLAPTKETYTSMI 1154



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/288 (20%), Positives = 120/288 (41%), Gaps = 1/288 (0%)

Query: 273  LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
            L++A  ++  M   G+V        ++ + ++   ++ A   F+ + + G  PD   Y  
Sbjct: 777  LKEAVDMILDMRNQGLVLTTRVMNRIILVAAEMRLVEYAGNVFDEMSARGVYPDSCTYKY 836

Query: 333  MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
            +I+ Y   G        +  M+  G          ++ +F +   V  A    + +    
Sbjct: 837  IIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVNRAVWFFHKVTKMG 896

Query: 393  FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
              P L + + ++    + G   QA    + M++ G KP+     S+I    KK   ++A 
Sbjct: 897  LSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAF 956

Query: 453  NLLLEL-EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
             L L+L   D ++P   TYT ++    + + ++ AE L  ++ E G  P      +L D 
Sbjct: 957  RLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDG 1016

Query: 512  YARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
            + +AG   KA + +  +  +        +  I++GL   G  ++A ++
Sbjct: 1017 HCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKL 1064



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/274 (22%), Positives = 118/274 (43%), Gaps = 3/274 (1%)

Query: 257  VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
             R  +++I   A+   +E A  +  +M+  G+ PD  T   ++  Y + GN+  A     
Sbjct: 796  TRVMNRIILVAAEMRLVEYAGNVFDEMSARGVYPDSCTYKYIIVGYCRNGNVLEADRWIC 855

Query: 317  SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
             +   GF  D      +I A+         +     +   G+  +   Y +++    + G
Sbjct: 856  EMMERGFVVDNATLTLIITAFCEKSLVNRAVWFFHKVTKMGLSPNLINYSSMISGLCKRG 915

Query: 377  DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL-GHKPDDRCT 435
             V+ A ++   M    ++P + + T L+    + G  ++A   F  +IR   +KP+    
Sbjct: 916  SVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTY 975

Query: 436  ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +MI+ Y K+  L +A  L   +++ G  P   TYT L+D   +    ++A +L+  +S 
Sbjct: 976  TAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSN 1035

Query: 496  LGEAPPFKIQVSLCDMYARAGIEKKALQAL--GF 527
             G  P      S+ D   + G  ++A + L  GF
Sbjct: 1036 EGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGF 1069



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 61/276 (22%), Positives = 117/276 (42%), Gaps = 7/276 (2%)

Query: 297  VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
             +V ++++ G L  A +    +R+ G     +V N +I+        +   ++ D M   
Sbjct: 766  CMVGVFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILVAAEMRLVEYAGNVFDEMSAR 825

Query: 357  GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
            G+      Y  ++  + + G+V  A +    M    F     + TL++ A+ +    ++A
Sbjct: 826  GVYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVNRA 885

Query: 417  RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476
               F  + ++G  P+    +SMI+   K+  + +A  LL E+ K+G++P   T+T L+  
Sbjct: 886  VWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHG 945

Query: 477  LGRLQLINEAEQLLGK-ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ- 534
            L +      A +L  K I      P      ++   Y +   E+K  +A    E  KEQ 
Sbjct: 946  LCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCK---EEKLSRAEMLFERMKEQG 1002

Query: 535  --MGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
                 + +  +I+G    G    A  +  LM  +GF
Sbjct: 1003 LVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGF 1038


>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
 gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
          Length = 924

 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 156/328 (47%), Gaps = 6/328 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +ID   K   ++ AE + ++M + G+ PD +T T+++    KA ++DRA+  F+ + 
Sbjct: 333 YNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMI 392

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +P+   YN +I  Y++ GQ +  +  +  M    +E     Y  LL    + G   
Sbjct: 393 DKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCN 452

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  + + M  +  +P++    +++  YG+ G   +     + M+  G  P+ R   ++I
Sbjct: 453 EARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVI 512

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            AY K+ ++D+ +++ +++++ G  P   TY  L+D L +L  +++A     ++   G  
Sbjct: 513 CAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVT 572

Query: 500 PPFKIQVSLCDMYARAGIEK-KALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQDA 556
           P   +  SL  +Y    ++K + ++ L FLE   + + PD   F  ++  L   G + +A
Sbjct: 573 PNNVVFNSL--VYGLCTVDKWEKVEEL-FLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEA 629

Query: 557 QRVHGLMEAQGFAASERLKVALISSQTF 584
           +R+   M   G          LI    F
Sbjct: 630 RRLIDSMVCMGLKPDVISYNTLIDGHCF 657



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 151/342 (44%), Gaps = 24/342 (7%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQ---------TNVRDYSKLIDAHA 268
           ++P+ + +  ++D L         K  E+ ++E  FQ         +NV  Y+ +ID   
Sbjct: 256 VKPNNVTYNTIIDGL--------CKAQEVDMAEGVFQKMVDKGVKPSNVT-YNTIIDGLC 306

Query: 269 KENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKK 328
           K   ++ AE + ++M + G+ PD VT   ++    KA  +D+A+  F+ +   G +PD  
Sbjct: 307 KAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNL 366

Query: 329 VYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIM 388
            Y  +I     A        +   MI  G++ +   Y  L+  +   G      Q    M
Sbjct: 367 TYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEM 426

Query: 389 RIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLL 448
              + +P + +  LL++   + G  ++ARS FD MIR G KP       M+  YGKK  L
Sbjct: 427 SAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGAL 486

Query: 449 DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSL 508
            +  +LL  +  +G  P    +  ++    +  +I+E   +  K+ + G +P      +L
Sbjct: 487 SEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTL 546

Query: 509 CDMYARAG-IEKKALQALGFLEAKKEQMGPDD--FERIINGL 547
            D   + G ++   LQ   F +   E + P++  F  ++ GL
Sbjct: 547 IDALCKLGRVDDAVLQ---FNQMINEGVTPNNVVFNSLVYGL 585



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/320 (21%), Positives = 127/320 (39%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E     +V  Y+ +ID   K   ++ AE + ++M E G+ P+ VT   ++    KA  +D
Sbjct: 218 EMGVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVD 277

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A+  F+ +   G +P    YN++I     A        +   MI  G++     Y  ++
Sbjct: 278 MAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTII 337

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               +   +  A  +   M  +  +P   + T++++   +A   D+A   F  MI  G K
Sbjct: 338 DGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVK 397

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           P++     +I  Y      ++ +  + E+     EP   TY +L+D+L +    NEA  L
Sbjct: 398 PNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSL 457

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLA 549
              +   G  P   I   +   Y + G   +    L  + A         F  +I     
Sbjct: 458 FDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYAK 517

Query: 550 GGFLQDAQRVHGLMEAQGFA 569
              + +   +   M+ QG +
Sbjct: 518 RAMIDEVMHIFIKMKQQGLS 537



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/327 (22%), Positives = 129/327 (39%), Gaps = 41/327 (12%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + ++    NV  Y  LIDA  K   ++DA     +M   G+ P+ V    LV+       
Sbjct: 531 MKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDK 590

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            ++ +E F  + + G +PD   +N+++      G+      L+D M+  G+         
Sbjct: 591 WEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGL--------- 641

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
                                     +P + S   L++ +  A   D+A    D M+  G
Sbjct: 642 --------------------------KPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAG 675

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            KP+     +++  Y K   +D A  L  E+ + G  PG  TY  +++ L R    +EA 
Sbjct: 676 LKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEAR 735

Query: 488 QL---LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERII 544
           +L   + K  +L     + I   + D + +     +A +    L +   Q+    F  +I
Sbjct: 736 ELYVNMIKSRKLWSICTYSI---ILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMI 792

Query: 545 NGLLAGGFLQDAQRVHGLMEAQGFAAS 571
           +GL  GG  +DA  +   + A G   S
Sbjct: 793 DGLFKGGRKEDAMDLFAAIPANGLVPS 819



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/307 (20%), Positives = 135/307 (43%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           ++  + N   Y+ LI  +      E+  + +K+M+ + + PD+ T  +L+    K G  +
Sbjct: 393 DKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCN 452

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A+  F+S+   G +P   +Y  M+  Y   G       L+++M+ +GI  +  I+  ++
Sbjct: 453 EARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVI 512

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
            ++A+   +     I   M+ +   P + +   L++A  + G  D A   F+ MI  G  
Sbjct: 513 CAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVT 572

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           P++    S++      +  +K   L LE+   G  P    +  ++  L +   + EA +L
Sbjct: 573 PNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRL 632

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLA 549
           +  +  +G  P      +L D +  A    +A++ L  + +   +     +  +++G   
Sbjct: 633 IDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCK 692

Query: 550 GGFLQDA 556
            G + +A
Sbjct: 693 AGRIDNA 699



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/324 (21%), Positives = 131/324 (40%), Gaps = 42/324 (12%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           + S   +V  Y+ +I+    E  ++ A  +  +M   G+ PD+VT   ++    KA  +D
Sbjct: 186 DSSCSPDVVSYNIVINGFFNEGQVDKAYSLFLEM---GVSPDVVTYNTIIDGLCKAQEVD 242

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
           RA++ F+ +   G +P+   YN++I     A +  +   +   M+  G++ S   Y    
Sbjct: 243 RAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTY---- 298

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
                                            +++   +A   D+A   F  MI  G K
Sbjct: 299 -------------------------------NTIIDGLCKAQAVDRAEGVFQQMIDRGVK 327

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     ++I    K   +DKA  +  ++   G +P   TYT+++D L + Q ++ AE +
Sbjct: 328 PDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGV 387

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFER--IINGL 547
             ++ + G  P       L   Y   G  ++ +Q +   E     + PD F    +++ L
Sbjct: 388 FQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIK--EMSAHDLEPDVFTYGLLLDYL 445

Query: 548 LAGGFLQDAQRVHGLMEAQGFAAS 571
              G   +A+ +   M  +G   S
Sbjct: 446 CKNGKCNEARSLFDSMIRKGIKPS 469



 Score = 47.0 bits (110), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 62/294 (21%), Positives = 113/294 (38%), Gaps = 56/294 (19%)

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG-----------------IERSE 362
           S+   PD   Y+ +I  +   G+ +LG +   +++ +G                  +R  
Sbjct: 77  SNKVAPDCCTYSIVIGCFCRIGRLELGFAAFGLILKTGWRVDDIVVNQLLKGLCDTKRVG 136

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIM-------RIEE---------------FQPTLESC 400
           E    LLR   + G   G      ++       R EE                 P + S 
Sbjct: 137 EAMHVLLRQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSY 196

Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
            +++  +   G  D+A S F   + +G  PD     ++I    K   +D+A ++  ++ +
Sbjct: 197 NIVINGFFNEGQVDKAYSLF---LEMGVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVE 253

Query: 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKK 520
            G +P   TY  ++D L + Q ++ AE +  K+ + G  P      ++ D   +A     
Sbjct: 254 KGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKA----- 308

Query: 521 ALQALGFLEAKKEQM-----GPDD--FERIINGLLAGGFLQDAQRVHGLMEAQG 567
             QA+   E   +QM      PD   +  II+GL     +  A+ V   M  +G
Sbjct: 309 --QAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKG 360



 Score = 47.0 bits (110), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 33/163 (20%), Positives = 72/163 (44%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           ++  YS ++D   K NC ++A +I + +    +  DI+T  +++    K G  + A + F
Sbjct: 749 SICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDGLFKGGRKEDAMDLF 808

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
            ++ ++G  P    Y  +    +  G  +    L  +M  SG   +  +  AL+R     
Sbjct: 809 AAIPANGLVPSVVTYRLIAENLIEEGSLEELDCLFSVMEKSGTAPNSHMLNALIRKLLDR 868

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418
           G++  AG   + +  + F     + ++L+  + +      A+S
Sbjct: 869 GEIPRAGAYLSKLDEKNFSLEASTTSMLISLFSREEYQQHAKS 911



 Score = 39.7 bits (91), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 54/110 (49%), Gaps = 2/110 (1%)

Query: 241 FKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
           FK+ + + S +  Q ++  ++ +ID   K    EDA  +   +  NG+VP +VT  ++  
Sbjct: 770 FKIFQSLCSMD-LQLDIITFNIMIDGLFKGGRKEDAMDLFAAIPANGLVPSVVTYRLIAE 828

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ-PKLGMSL 349
              + G+L+     F  +   G  P+  + N++I   ++ G+ P+ G  L
Sbjct: 829 NLIEEGSLEELDCLFSVMEKSGTAPNSHMLNALIRKLLDRGEIPRAGAYL 878


>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
 gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
          Length = 717

 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/382 (23%), Positives = 168/382 (43%), Gaps = 50/382 (13%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +  E    +V  Y+ L+  + K  CL ++  +  +M + G+VPD+VT T L+H   KAGN
Sbjct: 249 MVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGN 308

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L++A      +R  G + ++  + ++I  +   G     +  V+ M   GI+ S   Y A
Sbjct: 309 LEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNA 368

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA----------- 416
           L+  + + G +  A ++   M  +  +P + + + ++  Y + G+ D A           
Sbjct: 369 LINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKG 428

Query: 417 -------------------RSN-----FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
                              R N     F+ M++LG +PD+    ++I  + K+  ++KAL
Sbjct: 429 VLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKAL 488

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP----------- 501
           +L  E+ + G  P   TY+VL++ L +     EA +LL K+      P            
Sbjct: 489 SLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCC 548

Query: 502 ----FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQ 557
               FK  V+L   +   G+ K+A +    +  +  ++    +  +I+G   GG ++ A 
Sbjct: 549 SKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKAL 608

Query: 558 RVHGLMEAQGFAASERLKVALI 579
             H  M   GF+ +    ++L+
Sbjct: 609 SFHKQMLRSGFSPNSTSTISLV 630



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 146/320 (45%), Gaps = 4/320 (1%)

Query: 242 KVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM 301
           +V  L+  E + + N+  ++ +++   K   +E A ++  +M   G+ PD+V+   L+  
Sbjct: 208 RVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSG 267

Query: 302 YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS 361
           Y K G L  +   F  +   G  PD   + S+I A   AG  +  ++LV  M   G+  +
Sbjct: 268 YCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMN 327

Query: 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421
           E  + AL+  F + G +  A      MR    QP++     L+  Y + G  D AR    
Sbjct: 328 EVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIR 387

Query: 422 YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ 481
            M     KPD    +++I+ Y K   LD A  L  ++ K G  P   TY+ L+  L   +
Sbjct: 388 EMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEK 447

Query: 482 LINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--D 539
            +N+A +L   + +LG  P      +L D + + G  +KAL      E  ++ + PD   
Sbjct: 448 RLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHD--EMIRKGVLPDVVT 505

Query: 540 FERIINGLLAGGFLQDAQRV 559
           +  +INGL      ++A R+
Sbjct: 506 YSVLINGLSKSARTKEAHRL 525



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/296 (23%), Positives = 134/296 (45%), Gaps = 1/296 (0%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           L  A R L  M  +G+ P++ T  +LV      G L+ A      +R  G  P+   YN+
Sbjct: 133 LPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNT 192

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEI-YLALLRSFAQCGDVRGAGQITNIMRIE 391
           ++ A+  AG+      +V +M   G  +   + + +++    + G + GA ++ + M  E
Sbjct: 193 LVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVRE 252

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
              P + S   L+  Y + G   ++ + F  M + G  PD     S+I A  K   L++A
Sbjct: 253 GLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQA 312

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
           + L+ ++ + G      T+T L+D   +   +++A   + ++ + G  P      +L + 
Sbjct: 313 VALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALING 372

Query: 512 YARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
           Y + G    A + +  +EAK+ +     +  II+G    G L  A +++  M  +G
Sbjct: 373 YCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKG 428



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 134/306 (43%), Gaps = 9/306 (2%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ L+ A      LE+A  ++  M   G  P+ VT   LV  + +AG LD A+   
Sbjct: 151 NVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVV 210

Query: 316 ESLRSHG-FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
             +R  G  +P+   +NSM+     AG+ +    + D M+  G+      Y  LL  + +
Sbjct: 211 SLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCK 270

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
            G +  +  + + M      P + + T L+ A  +AG+ +QA +    M   G + ++  
Sbjct: 271 VGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVT 330

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
             ++I  + KK  LD AL  + E+ K G +P    Y  L++   +L  ++ A +L+ ++ 
Sbjct: 331 FTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREME 390

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG--PD--DFERIINGLLAG 550
                P      ++   Y + G    A Q    L  K  + G  PD   +  +I GL   
Sbjct: 391 AKRVKPDVVTYSTIISGYCKVGNLDSAFQ----LNQKMLKKGVLPDAITYSSLIRGLCEE 446

Query: 551 GFLQDA 556
             L DA
Sbjct: 447 KRLNDA 452



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 130/283 (45%), Gaps = 6/283 (2%)

Query: 287 GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLG 346
           G  P +     ++   S A +L  A+    S+  HG  P+   YN ++ A    G+ +  
Sbjct: 113 GYAPSVPAYNAVLLALSDA-SLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEA 171

Query: 347 MSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE-EFQPTLESCTLLVE 405
           + +V  M  +G   +   Y  L+ +F + G++ GA ++ ++MR E   +P L +   +V 
Sbjct: 172 VGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVN 231

Query: 406 AYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
              +AG  + AR  FD M+R G  PD     ++++ Y K   L ++L +  E+ + G  P
Sbjct: 232 GLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVP 291

Query: 466 GPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
              T+T L+    +   + +A  L+ ++ E G         +L D + + G    AL A+
Sbjct: 292 DVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAV 351

Query: 526 GFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQ 566
              E +K  + P    +  +ING    G +  A+ +   MEA+
Sbjct: 352 E--EMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAK 392



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/327 (22%), Positives = 138/327 (42%), Gaps = 42/327 (12%)

Query: 187 ITGKCK--LITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVA 244
           I G CK   + D +L++E+           K  +QPS + +  L++         Y K+ 
Sbjct: 335 IDGFCKKGFLDDALLAVEEMR---------KCGIQPSVVCYNALING--------YCKLG 377

Query: 245 ELVLSEE--------SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTST 296
            + L+ E          + +V  YS +I  + K   L+ A ++ +KM + G++PD +T +
Sbjct: 378 RMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYS 437

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
            L+    +   L+ A E FE++   G QPD+  Y ++I  +   G  +  +SL D MI  
Sbjct: 438 SLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRK 497

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT---------------LESCT 401
           G+      Y  L+   ++    + A ++   +  E+  P                 +S  
Sbjct: 498 GVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVV 557

Query: 402 LLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD 461
            L++ +   G   +A   +  M+    K D    + +I  + +   + KAL+   ++ + 
Sbjct: 558 ALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRS 617

Query: 462 GFEPGPATYTVLVDWLGRLQLINEAEQ 488
           GF P   +   LV  L    ++ EA+ 
Sbjct: 618 GFSPNSTSTISLVRGLFEEGMVVEADN 644


>gi|388499386|gb|AFK37759.1| unknown [Lotus japonicus]
          Length = 500

 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 145/306 (47%), Gaps = 6/306 (1%)

Query: 216 ELLQPSRIDWINLLD-----RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKE 270
           ++LQ S   W ++L      R+R+Q   +   +   +L   SF+ +V  Y+ LIDA  ++
Sbjct: 117 DMLQASLEIWDDILTVSVQLRMRKQWDSI-ISICRWILLRSSFKQDVICYNLLIDAFGQK 175

Query: 271 NCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVY 330
              ++AE    ++ E   +P+  T  +L+  Y  +G L++A+  F  ++++G      VY
Sbjct: 176 FLYKEAESTYLQLLEARCIPNEDTYALLIKAYCLSGLLEKAEAVFVEMKNYGLPSSAVVY 235

Query: 331 NSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRI 390
           NS I   +  G P     +   M   G + S E Y  L+  + + G    A ++ N M  
Sbjct: 236 NSYINGLMKGGNPNKAEEIFLRMKRDGCKPSTETYTMLINLYGKDGKSFMALKVFNEMLS 295

Query: 391 EEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDK 450
            + +P + + T LV A+ + G  ++A   F+ M   G +PD     +++ AY +      
Sbjct: 296 HKCKPNICTYTALVNAFAREGLCEKAEEVFEQMQEAGLEPDVYSYNALMEAYSRAGFPYG 355

Query: 451 ALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCD 510
           A  +   ++  G EP  A+Y +LVD  GR   +N+AE +   +  +G  P  K  + L  
Sbjct: 356 AAEIFSLMQHMGCEPDRASYNILVDAYGRAGFLNDAEAVFEDMKRVGITPTMKSHMVLLS 415

Query: 511 MYARAG 516
            +++ G
Sbjct: 416 AFSKTG 421



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 160/360 (44%), Gaps = 7/360 (1%)

Query: 199 LSLEKEEDPSPLLAEWKELLQPSRIDWI--NLLDRLREQNTQLYFKVAE---LVLSEESF 253
           L + K+ D    +  W  L    + D I  NLL  +     +  +K AE   L L E   
Sbjct: 136 LRMRKQWDSIISICRWILLRSSFKQDVICYNLL--IDAFGQKFLYKEAESTYLQLLEARC 193

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
             N   Y+ LI A+     LE AE +  +M   G+    V     ++   K GN ++A+E
Sbjct: 194 IPNEDTYALLIKAYCLSGLLEKAEAVFVEMKNYGLPSSAVVYNSYINGLMKGGNPNKAEE 253

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            F  ++  G +P  + Y  +I  Y   G+  + + + + M++   + +   Y AL+ +FA
Sbjct: 254 IFLRMKRDGCKPSTETYTMLINLYGKDGKSFMALKVFNEMLSHKCKPNICTYTALVNAFA 313

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           + G    A ++   M+    +P + S   L+EAY +AG P  A   F  M  +G +PD  
Sbjct: 314 REGLCEKAEEVFEQMQEAGLEPDVYSYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRA 373

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
               ++ AYG+   L+ A  +  ++++ G  P   ++ VL+    +   +++ E +L ++
Sbjct: 374 SYNILVDAYGRAGFLNDAEAVFEDMKRVGITPTMKSHMVLLSAFSKTGNVSKCEDILNQM 433

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFL 553
            + G      +  S+ ++Y R G   K  + L  +E    +     +  +IN     GF+
Sbjct: 434 CKSGLKLDTFVLNSMLNLYGRLGQFGKMEEVLTVMENGSCEADISTYNILINRYGQAGFI 493



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 112/231 (48%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI+ + K+     A ++  +M  +   P+I T T LV+ +++ G  ++A+E FE ++
Sbjct: 270 YTMLINLYGKDGKSFMALKVFNEMLSHKCKPNICTYTALVNAFAREGLCEKAEEVFEQMQ 329

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +PD   YN+++ AY  AG P     +  +M   G E     Y  L+ ++ + G + 
Sbjct: 330 EAGLEPDVYSYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNILVDAYGRAGFLN 389

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  +   M+     PT++S  +L+ A+ + G+  +     + M + G K D     SM+
Sbjct: 390 DAEAVFEDMKRVGITPTMKSHMVLLSAFSKTGNVSKCEDILNQMCKSGLKLDTFVLNSML 449

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
             YG+     K   +L  +E    E   +TY +L++  G+   I++ E L 
Sbjct: 450 NLYGRLGQFGKMEEVLTVMENGSCEADISTYNILINRYGQAGFIDKMEGLF 500



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 98/214 (45%), Gaps = 36/214 (16%)

Query: 242 KVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM 301
           KV   +LS +  + N+  Y+ L++A A+E   E AE + ++M E G+ PD+ +   L+  
Sbjct: 288 KVFNEMLSHKC-KPNICTYTALVNAFAREGLCEKAEEVFEQMQEAGLEPDVYSYNALMEA 346

Query: 302 YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS 361
           YS+AG    A E F  ++  G +PD+  YN ++ AY  AG      ++ + M   GI  +
Sbjct: 347 YSRAGFPYGAAEIFSLMQHMGCEPDRASYNILVDAYGRAGFLNDAEAVFEDMKRVGITPT 406

Query: 362 EEIYLALLRSFAQCGDVRGAGQITNIM--------------------------RIEEFQP 395
            + ++ LL +F++ G+V     I N M                          ++EE   
Sbjct: 407 MKSHMVLLSAFSKTGNVSKCEDILNQMCKSGLKLDTFVLNSMLNLYGRLGQFGKMEEVLT 466

Query: 396 TLE--SC-------TLLVEAYGQAGDPDQARSNF 420
            +E  SC        +L+  YGQAG  D+    F
Sbjct: 467 VMENGSCEADISTYNILINRYGQAGFIDKMEGLF 500



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 114/268 (42%), Gaps = 9/268 (3%)

Query: 318 LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
           LRS  F+ D   YN +I A+      K   S    ++ +    +E+ Y  L++++   G 
Sbjct: 154 LRS-SFKQDVICYNLLIDAFGQKFLYKEAESTYLQLLEARCIPNEDTYALLIKAYCLSGL 212

Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
           +  A  +   M+      +       +    + G+P++A   F  M R G KP       
Sbjct: 213 LEKAEAVFVEMKNYGLPSSAVVYNSYINGLMKGGNPNKAEEIFLRMKRDGCKPSTETYTM 272

Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           +I  YGK      AL +  E+     +P   TYT LV+   R  L  +AE++  ++ E G
Sbjct: 273 LINLYGKDGKSFMALKVFNEMLSHKCKPNICTYTALVNAFAREGLCEKAEEVFEQMQEAG 332

Query: 498 EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG--PD--DFERIINGLLAGGFL 553
             P      +L + Y+RAG    A +    +    + MG  PD   +  +++     GFL
Sbjct: 333 LEPDVYSYNALMEAYSRAGFPYGAAEIFSLM----QHMGCEPDRASYNILVDAYGRAGFL 388

Query: 554 QDAQRVHGLMEAQGFAASERLKVALISS 581
            DA+ V   M+  G   + +  + L+S+
Sbjct: 389 NDAEAVFEDMKRVGITPTMKSHMVLLSA 416



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/181 (21%), Positives = 79/181 (43%)

Query: 387 IMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKN 446
           I+    F+  +    LL++A+GQ     +A S +  ++     P++   A +I AY    
Sbjct: 152 ILLRSSFKQDVICYNLLIDAFGQKFLYKEAESTYLQLLEARCIPNEDTYALLIKAYCLSG 211

Query: 447 LLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQV 506
           LL+KA  + +E++  G       Y   ++ L +    N+AE++  ++   G  P  +   
Sbjct: 212 LLEKAEAVFVEMKNYGLPSSAVVYNSYINGLMKGGNPNKAEEIFLRMKRDGCKPSTETYT 271

Query: 507 SLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQ 566
            L ++Y + G    AL+    + + K +     +  ++N     G  + A+ V   M+  
Sbjct: 272 MLINLYGKDGKSFMALKVFNEMLSHKCKPNICTYTALVNAFAREGLCEKAEEVFEQMQEA 331

Query: 567 G 567
           G
Sbjct: 332 G 332


>gi|225457536|ref|XP_002272226.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial [Vitis vinifera]
 gi|297745544|emb|CBI40709.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 136/283 (48%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L E       R Y+ L+  + K   L+DAE I+ +M  +G  PD  T ++L+  Y+ AG 
Sbjct: 317 LKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAGR 376

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            + A+   + + + G +P+  V++ ++ +Y + G+ +    ++  M  SG+      Y  
Sbjct: 377 WESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMRNSGVSPDRHFYNV 436

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++ +F +C  +  A    + MR+E  QP   +   L++ + ++G  ++A   F+ M   G
Sbjct: 437 MIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQESG 496

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P       MI ++G++   +    LL +++  G      TYT LVD  G+     +A 
Sbjct: 497 CSPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANVVTYTTLVDIYGQSGRFKDAI 556

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEA 530
           + L  +  +G  P   +  +L + YA+ G+ ++A+ A   + A
Sbjct: 557 ECLEVMKSVGLKPSSTMYNALINAYAQRGLSEQAINAFRVMRA 599



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 145/319 (45%)

Query: 263 LIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG 322
           +I A       E+AE I +++ E G++P       L+  Y K G+L  A+     +   G
Sbjct: 297 VITALGNAGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSG 356

Query: 323 FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAG 382
           F PD+  Y+ +I AY NAG+ +    ++  M  SG+  +  ++  +L S+   G  + + 
Sbjct: 357 FSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSF 416

Query: 383 QITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAY 442
           Q+   MR     P      ++++ +G+    D A + FD M   G +PD     ++I  +
Sbjct: 417 QVLREMRNSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCH 476

Query: 443 GKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPF 502
            K    +KA  L   +++ G  P   TY ++++  G  +   + + LLGK+   G     
Sbjct: 477 CKSGHHNKAEELFEAMQESGCSPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANV 536

Query: 503 KIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGL 562
               +L D+Y ++G  K A++ L  +++   +     +  +IN     G  + A     +
Sbjct: 537 VTYTTLVDIYGQSGRFKDAIECLEVMKSVGLKPSSTMYNALINAYAQRGLSEQAINAFRV 596

Query: 563 MEAQGFAASERLKVALISS 581
           M A G   S  +  +LI++
Sbjct: 597 MRADGLKPSVLVLNSLINA 615



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 122/249 (48%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +ID   K NCL+ A     +M   G+ PD VT   L+  + K+G+ ++A+E FE+++
Sbjct: 434 YNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQ 493

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P    YN MI ++    + +   +L+  M + G+  +   Y  L+  + Q G  +
Sbjct: 494 ESGCSPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANVVTYTTLVDIYGQSGRFK 553

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A +   +M+    +P+      L+ AY Q G  +QA + F  M   G KP      S+I
Sbjct: 554 DAIECLEVMKSVGLKPSSTMYNALINAYAQRGLSEQAINAFRVMRADGLKPSVLVLNSLI 613

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            A+G+     +A ++L  ++++  +P   TYT L+  L R++  ++   +  +++  G  
Sbjct: 614 NAFGEDRRDAEAFSVLQYMKENDLKPDVVTYTTLMKALIRVEKFDKVPAVYEEMTLSGCT 673

Query: 500 PPFKIQVSL 508
           P  K +  L
Sbjct: 674 PDRKARAML 682



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 117/255 (45%), Gaps = 13/255 (5%)

Query: 189 GKCKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAEL-- 246
           GKC  +   + + ++            E +QP  + W  L+D      +  + K  EL  
Sbjct: 442 GKCNCLDHALATFDRMR---------MEGVQPDAVTWNTLIDC--HCKSGHHNKAEELFE 490

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
            + E         Y+ +I++  ++   ED + +L KM   G++ ++VT T LV +Y ++G
Sbjct: 491 AMQESGCSPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANVVTYTTLVDIYGQSG 550

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
               A E  E ++S G +P   +YN++I AY   G  +  ++   +M   G++ S  +  
Sbjct: 551 RFKDAIECLEVMKSVGLKPSSTMYNALINAYAQRGLSEQAINAFRVMRADGLKPSVLVLN 610

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           +L+ +F +      A  +   M+  + +P + + T L++A  +    D+  + ++ M   
Sbjct: 611 SLINAFGEDRRDAEAFSVLQYMKENDLKPDVVTYTTLMKALIRVEKFDKVPAVYEEMTLS 670

Query: 427 GHKPDDRCTASMIAA 441
           G  PD +  A + +A
Sbjct: 671 GCTPDRKARAMLRSA 685



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 97/215 (45%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           E  Q +   ++ LID H K      AE + + M E+G  P   T  ++++ + +    + 
Sbjct: 460 EGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQESGCSPCTTTYNIMINSFGEQERWED 519

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
            K     ++S G   +   Y +++  Y  +G+ K  +  +++M + G++ S  +Y AL+ 
Sbjct: 520 VKTLLGKMQSQGLLANVVTYTTLVDIYGQSGRFKDAIECLEVMKSVGLKPSSTMYNALIN 579

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
           ++AQ G    A     +MR +  +P++     L+ A+G+     +A S   YM     KP
Sbjct: 580 AYAQRGLSEQAINAFRVMRADGLKPSVLVLNSLINAFGEDRRDAEAFSVLQYMKENDLKP 639

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
           D     +++ A  +    DK   +  E+   G  P
Sbjct: 640 DVVTYTTLMKALIRVEKFDKVPAVYEEMTLSGCTP 674


>gi|449455469|ref|XP_004145475.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Cucumis sativus]
          Length = 728

 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 130/279 (46%)

Query: 237 TQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTST 296
           T+  F++   ++  ++++ NV  Y+ +I  + KE  L  AE + ++M E G+VP+  T T
Sbjct: 365 TERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYT 424

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
            L+  + KAGN  +A E  E + + GF P+   YNS++      G+ +    L++    +
Sbjct: 425 TLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQN 484

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
            IE     Y  L+    +  D+  A    N M    FQP +   T L+ A+ +      +
Sbjct: 485 QIEADGVTYTILISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDS 544

Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476
              FD +I+LG  P      SMI  Y ++  +  A+    ++   G  P   +Y  L+  
Sbjct: 545 EKLFDEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISG 604

Query: 477 LGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
           L +   ++EA QL   + + G +P    +V+L   Y + 
Sbjct: 605 LCKESRLDEARQLYDTMIDKGLSPCEVTRVTLTYEYCKT 643



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 159/344 (46%), Gaps = 12/344 (3%)

Query: 239 LYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVL 298
            + KV ++ LS      N+ +YS +I    K   ++ A  +L++M +NG  P++ T T L
Sbjct: 301 FFHKVTKMGLSP-----NLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSL 355

Query: 299 VHMYSKAGNLDRAKEAFESL-RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG 357
           +H   K G  +RA   F  L RS  ++P+   Y +MI  Y    +      L + M   G
Sbjct: 356 IHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQG 415

Query: 358 IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
           +  +   Y  L+    + G+   A ++  +M  E F P   +   +V+   + G  ++A 
Sbjct: 416 LVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAF 475

Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
              +   +   + D      +I+   K+  +++AL  L ++ K GF+P    YT L+   
Sbjct: 476 KLLNTGFQNQIEADGVTYTILISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAF 535

Query: 478 GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ-MG 536
            R  ++ ++E+L  ++ +LG AP  +   S+   Y R   EKK   A+ F +   +    
Sbjct: 536 CRQNMMKDSEKLFDEVIKLGLAPTKETYTSMICGYCR---EKKVSLAVKFFQKMSDHGCA 592

Query: 537 PD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVAL 578
           PD   +  +I+GL     L +A++++  M  +G +  E  +V L
Sbjct: 593 PDSISYGALISGLCKESRLDEARQLYDTMIDKGLSPCEVTRVTL 636



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 71/326 (21%), Positives = 140/326 (42%), Gaps = 9/326 (2%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  +I  + +   + +A+R + +M E G V D  T T+++  + +   ++RA   F  + 
Sbjct: 247 YKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVNRAVWFFHKVT 306

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P+   Y+SMI      G  K    L++ M+ +G + +   + +L+    + G   
Sbjct: 307 KMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTE 366

Query: 380 GAGQI-TNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
            A ++   ++R + ++P + + T ++  Y +     +A   F+ M   G  P+     ++
Sbjct: 367 RAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTL 426

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK-ISELG 497
           I  + K     KA  L+  +  +GF P   TY  +VD L +     EA +LL        
Sbjct: 427 IDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQI 486

Query: 498 EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK-KEQMGPDD--FERIINGLLAGGFLQ 554
           EA      + + +   RA +     QAL FL    K    PD   +  +I        ++
Sbjct: 487 EADGVTYTILISEQCKRADMN----QALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMK 542

Query: 555 DAQRVHGLMEAQGFAASERLKVALIS 580
           D++++   +   G A ++    ++I 
Sbjct: 543 DSEKLFDEVIKLGLAPTKETYTSMIC 568



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/275 (22%), Positives = 118/275 (42%), Gaps = 3/275 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
             R  +++I   A+   +E A  +  +M+  G+ PD  T   ++  Y + GN+  A    
Sbjct: 208 TTRVMNRIILVAAEMRLVEYAGNVFDEMSARGVYPDSCTYKYIIVGYCRNGNVLEADRWI 267

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   GF  D      +I A+         +     +   G+  +   Y +++    + 
Sbjct: 268 CEMMERGFVVDNATLTLIITAFCEKSLVNRAVWFFHKVTKMGLSPNLINYSSMISGLCKR 327

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL-GHKPDDRC 434
           G V+ A ++   M    ++P + + T L+    + G  ++A   F  +IR   +KP+   
Sbjct: 328 GSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHT 387

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
             +MI+ Y K+  L +A  L   +++ G  P   TYT L+D   +    ++A +L+  +S
Sbjct: 388 YTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELMS 447

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQAL--GF 527
             G  P      S+ D   + G  ++A + L  GF
Sbjct: 448 NEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGF 482



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/288 (20%), Positives = 120/288 (41%), Gaps = 1/288 (0%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           L++A  ++  M   G+V        ++ + ++   ++ A   F+ + + G  PD   Y  
Sbjct: 190 LKEAVDMILDMRNQGLVLTTRVMNRIILVAAEMRLVEYAGNVFDEMSARGVYPDSCTYKY 249

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I+ Y   G        +  M+  G          ++ +F +   V  A    + +    
Sbjct: 250 IIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVNRAVWFFHKVTKMG 309

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P L + + ++    + G   QA    + M++ G KP+     S+I    KK   ++A 
Sbjct: 310 LSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAF 369

Query: 453 NLLLEL-EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
            L L+L   D ++P   TYT ++    + + ++ AE L  ++ E G  P      +L D 
Sbjct: 370 RLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDG 429

Query: 512 YARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           + +AG   KA + +  +  +        +  I++GL   G  ++A ++
Sbjct: 430 HCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKL 477



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 119/276 (43%), Gaps = 7/276 (2%)

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
            +V ++++ G L  A +    +R+ G     +V N +I+        +   ++ D M   
Sbjct: 179 CMVGVFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILVAAEMRLVEYAGNVFDEMSAR 238

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
           G+      Y  ++  + + G+V  A +    M    F     + TL++ A+ +    ++A
Sbjct: 239 GVYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVNRA 298

Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476
              F  + ++G  P+    +SMI+   K+  + +A  LL E+ K+G++P   T+T L+  
Sbjct: 299 VWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHG 358

Query: 477 LGRLQLINEAEQLLGK-ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ- 534
           L +      A +L  K I      P      ++   Y +   E+K  +A    E  KEQ 
Sbjct: 359 LCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCK---EEKLSRAEMLFERMKEQG 415

Query: 535 MGP--DDFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
           + P  + +  +I+G    G    A  +  LM  +GF
Sbjct: 416 LVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGF 451


>gi|302794005|ref|XP_002978767.1| hypothetical protein SELMODRAFT_109632 [Selaginella moellendorffii]
 gi|300153576|gb|EFJ20214.1| hypothetical protein SELMODRAFT_109632 [Selaginella moellendorffii]
          Length = 521

 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 97/374 (25%), Positives = 166/374 (44%), Gaps = 48/374 (12%)

Query: 242 KVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM 301
           ++ E VL   +F+ ++  Y+ LIDA+ K   +EDAE+   +M E   VP+  T  VL++ 
Sbjct: 89  QMCEWVLQGTAFRPDLGCYNLLIDAYGKSLNIEDAEKTFNRMQEALCVPNEETFGVLING 148

Query: 302 YSKAGNLDRAKEAFESLRSHGF-----------------------------------QPD 326
           Y  AG+ ++A+E F  ++  G+                                   +P+
Sbjct: 149 YRLAGSFEKAEELFVQMQKRGYSPGPLACNTFLHVLEDAKEYRRAEALFRDLEKYECEPN 208

Query: 327 KKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITN 386
              YN MI+ Y  AG+P     L   M  +    +   + AL+ +FA+ G  R A +  +
Sbjct: 209 IDTYNRMIVIYGKAGEPSKAEMLYRSMRRAMCPPNICTFTALMNAFARQGLYREAERYFD 268

Query: 387 IMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKN 446
            ++  +++P   +   L+EAY Q G P  A   F  M R G  PD      +I AYG+  
Sbjct: 269 KLQEFDYKPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILINAYGRAG 328

Query: 447 LLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQV 506
           L + A  +   ++  GF P   +  +L+    R   + EAE+L+  +   G  P   I  
Sbjct: 329 LYEDAEKIFKSMQSAGFSPNLKSNMLLLSAYARAGRVEEAEELVSAMERDGTKPDTLIYN 388

Query: 507 SLCDMYARAGIEKKALQAL--GFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGL 562
           +L + Y  +G   + ++AL    +++  +Q  PD   +  +I      GF+  A+ +   
Sbjct: 389 ALINAYGVSG-RHEDMEALLAKMVKSSSKQTKPDIGTYNTLIQVYAQAGFIPKAEELF-- 445

Query: 563 MEAQGFAASERLKV 576
              QG A   RLK+
Sbjct: 446 ---QGLA---RLKL 453



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 122/273 (44%), Gaps = 3/273 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  Y+++I  + K      AE + + M      P+I T T L++ +++ G    A+  F
Sbjct: 208 NIDTYNRMIVIYGKAGEPSKAEMLYRSMRRAMCPPNICTFTALMNAFARQGLYREAERYF 267

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + L+   ++PD   YN+++ AY   G P   + +   M  +G       +  L+ ++ + 
Sbjct: 268 DKLQEFDYKPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILINAYGRA 327

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G    A +I   M+   F P L+S  LL+ AY +AG  ++A      M R G KPD    
Sbjct: 328 GLYEDAEKIFKSMQSAGFSPNLKSNMLLLSAYARAGRVEEAEELVSAMERDGTKPDTLIY 387

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDG---FEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
            ++I AYG     +    LL ++ K      +P   TY  L+    +   I +AE+L   
Sbjct: 388 NALINAYGVSGRHEDMEALLAKMVKSSSKQTKPDIGTYNTLIQVYAQAGFIPKAEELFQG 447

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
           ++ L   P      +L   YA+  + +K    L
Sbjct: 448 LARLKLVPDATTWTALMGGYAKKKLYRKCTSIL 480



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 115/246 (46%), Gaps = 3/246 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L E  ++ +   Y+ L++A+++      A  I + M  NG  PD V+  +L++ Y +AG 
Sbjct: 270 LQEFDYKPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILINAYGRAGL 329

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            + A++ F+S++S GF P+ K    ++ AY  AG+ +    LV  M   G +    IY A
Sbjct: 330 YEDAEKIFKSMQSAGFSPNLKSNMLLLSAYARAGRVEEAEELVSAMERDGTKPDTLIYNA 389

Query: 368 LLRSFAQCGDVRGAGQITNIM---RIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
           L+ ++   G       +   M     ++ +P + +   L++ Y QAG   +A   F  + 
Sbjct: 390 LINAYGVSGRHEDMEALLAKMVKSSSKQTKPDIGTYNTLIQVYAQAGFIPKAEELFQGLA 449

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
           RL   PD     +++  Y KK L  K  ++L ++ + G      T  VL       + + 
Sbjct: 450 RLKLVPDATTWTALMGGYAKKKLYRKCTSILKKMLESGCRADAVTARVLFSACRSPEQVE 509

Query: 485 EAEQLL 490
           +  QL+
Sbjct: 510 QVTQLM 515



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 122/289 (42%), Gaps = 6/289 (2%)

Query: 296 TVLVHMYSKAGNLDRAKEAFE-SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMI 354
           +V+VH ++   +  R  +  E  L+   F+PD   YN +I AY  +   +      + M 
Sbjct: 73  SVVVHFWNYK-DWPRVTQMCEWVLQGTAFRPDLGCYNLLIDAYGKSLNIEDAEKTFNRMQ 131

Query: 355 TSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPD 414
            +    +EE +  L+  +   G    A ++   M+   + P   +C   +     A +  
Sbjct: 132 EALCVPNEETFGVLINGYRLAGSFEKAEELFVQMQKRGYSPGPLACNTFLHVLEDAKEYR 191

Query: 415 QARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
           +A + F  + +   +P+      MI  YGK     KA  L   + +    P   T+T L+
Sbjct: 192 RAEALFRDLEKYECEPNIDTYNRMIVIYGKAGEPSKAEMLYRSMRRAMCPPNICTFTALM 251

Query: 475 DWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ 534
           +   R  L  EAE+   K+ E    P      +L + Y++ G    AL+   F   ++  
Sbjct: 252 NAFARQGLYREAERYFDKLQEFDYKPDHYAYNALMEAYSQGGSPAGALEI--FQTMQRNG 309

Query: 535 MGPDDFER--IINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
             PD      +IN     G  +DA+++   M++ GF+ + +  + L+S+
Sbjct: 310 CFPDTVSHNILINAYGRAGLYEDAEKIFKSMQSAGFSPNLKSNMLLLSA 358


>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Vitis vinifera]
          Length = 746

 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 145/325 (44%), Gaps = 35/325 (10%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E+    +V  Y+ +++   KE  L +A+ +  +M E G+ PD  T T L++ YSK GN++
Sbjct: 457 EQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMN 516

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
           +A   FE +     +PD   YN++I  +    + +    L + MI+  I  +   Y  L+
Sbjct: 517 KAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILI 576

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
             +   G V  A ++ + M  + F+ T+ +C  +V+ Y +AG+  +A      M+  G  
Sbjct: 577 NGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIV 636

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     ++I  + K+  +D+A  L+ ++E  G  P   TY V+++   R   + EAE +
Sbjct: 637 PDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELI 696

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLA 549
           + K+ E G  P      SL                                   ING + 
Sbjct: 697 MLKMIERGVNPDRSTYTSL-----------------------------------INGHVT 721

Query: 550 GGFLQDAQRVHGLMEAQGFAASERL 574
              L++A RVH  M  +GF   ++ 
Sbjct: 722 QNNLKEAFRVHDEMLQRGFVPDDKF 746



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 140/299 (46%), Gaps = 4/299 (1%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           Q NV   + +I+A  K   +E+ +  L  M E G+ PD+VT   L++ Y + G L+ A E
Sbjct: 251 QVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFE 310

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
             +S+   G +P    YN++I      G+      ++D M+  G+      Y  LL    
Sbjct: 311 LMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECC 370

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           +  ++  A +I + M  +   P L S + L+    + G  DQA   F  M   G  PD+ 
Sbjct: 371 RNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNV 430

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
               +I  + +  ++ +AL +  E+ + G      TY  +++ L + ++++EA++L  ++
Sbjct: 431 IYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEM 490

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAG 550
           +E G  P F    +L + Y++ G   KA+    F    +  + PD   +  +I+G   G
Sbjct: 491 TERGVFPDFYTFTTLINGYSKDGNMNKAVTL--FEMMIQRNLKPDVVTYNTLIDGFCKG 547



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 137/295 (46%), Gaps = 12/295 (4%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+    + + + DAERI  +M   G+VPD+V+ + L+ + SK G LD+A + F  ++
Sbjct: 362 YNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMK 421

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G  PD  +Y  +I  +   G     + + D M+  G       Y  +L    +   + 
Sbjct: 422 NAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLS 481

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++   M      P   + T L+  Y + G+ ++A + F+ MI+   KPD     ++I
Sbjct: 482 EADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLI 541

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             + K + ++K   L  ++      P   +Y +L++    +  ++EA +L  ++ E G  
Sbjct: 542 DGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKG-- 599

Query: 500 PPFKIQVSLCDM----YARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLL 548
             F+  +  C+     Y RAG   KA + L  +  K   + PD   +  +ING +
Sbjct: 600 --FEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKG--IVPDGITYNTLINGFI 650



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/335 (22%), Positives = 138/335 (41%), Gaps = 21/335 (6%)

Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVP--DIVTSTVL----------- 298
           +F+ +++ +S +I    +   L DA+ ++ +M     V   +IV S VL           
Sbjct: 127 NFKHSLQSFSAMIHILVRSRRLPDAQAVILRMVRKSGVSRVEIVESLVLTYGNCGSNPLV 186

Query: 299 ----VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMI 354
               V  Y +A  L    EAF  L+S G        NS++   V  G   L   +   ++
Sbjct: 187 FDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVV 246

Query: 355 TSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPD 414
            SG++ +      ++ +  +   +       + M  +   P + +   L+ AY + G  +
Sbjct: 247 RSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLE 306

Query: 415 QARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
           +A    D M   G KP      ++I    K     +A  +L E+ K G  P  ATY +L+
Sbjct: 307 EAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILL 366

Query: 475 DWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ 534
               R   + +AE++  ++   G  P      +L  + ++ G   +AL+   F + K   
Sbjct: 367 VECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKY--FRDMKNAG 424

Query: 535 MGPDD--FERIINGLLAGGFLQDAQRVHGLMEAQG 567
           + PD+  +  +I G    G + +A +V   M  QG
Sbjct: 425 LAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQG 459



 Score = 45.4 bits (106), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 54/254 (21%), Positives = 103/254 (40%), Gaps = 22/254 (8%)

Query: 301 MYSKAGNLDRAKEAFESLRSH--GFQPDKKVYNSMIMAYVNAGQ-PKLGMSLVDMMITSG 357
           +Y    NL   +   +S+ S+   F+   + +++MI   V + + P     ++ M+  SG
Sbjct: 104 LYKCRENLQLGQRFIDSITSNCPNFKHSLQSFSAMIHILVRSRRLPDAQAVILRMVRKSG 163

Query: 358 IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
           + R E I  +L+ ++  CG        +N +  +          LLV  Y QA    +  
Sbjct: 164 VSRVE-IVESLVLTYGNCG--------SNPLVFD----------LLVRTYVQARKLREGC 204

Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
             F  +   G         S++    K   +D A  +  E+ + G +    T  ++++ L
Sbjct: 205 EAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINAL 264

Query: 478 GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP 537
            + Q I   +  L  + E G  P      +L + Y R G+ ++A + +  +  K  +   
Sbjct: 265 CKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCV 324

Query: 538 DDFERIINGLLAGG 551
             +  IINGL   G
Sbjct: 325 FTYNAIINGLCKTG 338


>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 145/325 (44%), Gaps = 35/325 (10%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E+    +V  Y+ +++   KE  L +A+ +  +M E G+ PD  T T L++ YSK GN++
Sbjct: 300 EQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMN 359

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
           +A   FE +     +PD   YN++I  +    + +    L + MI+  I  +   Y  L+
Sbjct: 360 KAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILI 419

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
             +   G V  A ++ + M  + F+ T+ +C  +V+ Y +AG+  +A      M+  G  
Sbjct: 420 NGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIV 479

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     ++I  + K+  +D+A  L+ ++E  G  P   TY V+++   R   + EAE +
Sbjct: 480 PDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELI 539

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLA 549
           + K+ E G  P      SL                                   ING + 
Sbjct: 540 MLKMIERGVNPDRSTYTSL-----------------------------------INGHVT 564

Query: 550 GGFLQDAQRVHGLMEAQGFAASERL 574
              L++A RVH  M  +GF   ++ 
Sbjct: 565 QNNLKEAFRVHDEMLQRGFVPDDKF 589



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 140/299 (46%), Gaps = 4/299 (1%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           Q NV   + +I+A  K   +E+ +  L  M E G+ PD+VT   L++ Y + G L+ A E
Sbjct: 94  QVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFE 153

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
             +S+   G +P    YN++I      G+      ++D M+  G+      Y  LL    
Sbjct: 154 LMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECC 213

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           +  ++  A +I + M  +   P L S + L+    + G  DQA   F  M   G  PD+ 
Sbjct: 214 RNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNV 273

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
               +I  + +  ++ +AL +  E+ + G      TY  +++ L + ++++EA++L  ++
Sbjct: 274 IYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEM 333

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAG 550
           +E G  P F    +L + Y++ G   KA+    F    +  + PD   +  +I+G   G
Sbjct: 334 TERGVFPDFYTFTTLINGYSKDGNMNKAVTL--FEMMIQRNLKPDVVTYNTLIDGFCKG 390



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 137/295 (46%), Gaps = 12/295 (4%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+    + + + DAERI  +M   G+VPD+V+ + L+ + SK G LD+A + F  ++
Sbjct: 205 YNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMK 264

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G  PD  +Y  +I  +   G     + + D M+  G       Y  +L    +   + 
Sbjct: 265 NAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLS 324

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++   M      P   + T L+  Y + G+ ++A + F+ MI+   KPD     ++I
Sbjct: 325 EADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLI 384

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             + K + ++K   L  ++      P   +Y +L++    +  ++EA +L  ++ E G  
Sbjct: 385 DGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKG-- 442

Query: 500 PPFKIQVSLCDM----YARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLL 548
             F+  +  C+     Y RAG   KA + L  +  K   + PD   +  +ING +
Sbjct: 443 --FEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKG--IVPDGITYNTLINGFI 493



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 114/273 (41%), Gaps = 4/273 (1%)

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           +LV  Y +A  L    EAF  L+S G        NS++   V  G   L   +   ++ S
Sbjct: 32  LLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRS 91

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
           G++ +      ++ +  +   +       + M  +   P + +   L+ AY + G  ++A
Sbjct: 92  GVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEA 151

Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476
               D M   G KP      ++I    K     +A  +L E+ K G  P  ATY +L+  
Sbjct: 152 FELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVE 211

Query: 477 LGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG 536
             R   + +AE++  ++   G  P      +L  + ++ G   +AL+   F + K   + 
Sbjct: 212 CCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKY--FRDMKNAGLA 269

Query: 537 PDD--FERIINGLLAGGFLQDAQRVHGLMEAQG 567
           PD+  +  +I G    G + +A +V   M  QG
Sbjct: 270 PDNVIYTILIGGFCRNGVMSEALKVRDEMLEQG 302



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/219 (21%), Positives = 92/219 (42%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++ + + + +V  Y+ LID   K + +E    +   M    I P+ ++  +L++ Y   G
Sbjct: 367 MMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMG 426

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            +  A   ++ +   GF+      N+++  Y  AG        +  M+  GI      Y 
Sbjct: 427 CVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYN 486

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+  F +  ++  A  + N M      P + +  +++  + + G   +A      MI  
Sbjct: 487 TLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIER 546

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
           G  PD     S+I  +  +N L +A  +  E+ + GF P
Sbjct: 547 GVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVP 585



 Score = 43.1 bits (100), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 2/112 (1%)

Query: 218 LQPSRIDWINLLDR-LREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           + P  I +  L++  ++E+N    F +    +       +V  Y+ +++  +++  +++A
Sbjct: 478 IVPDGITYNTLINGFIKEENMDRAFALVN-KMENSGLLPDVITYNVILNGFSRQGRMQEA 536

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKK 328
           E I+ KM E G+ PD  T T L++ +    NL  A    + +   GF PD K
Sbjct: 537 ELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPDDK 588


>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
 gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
          Length = 755

 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 146/312 (46%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E S + +V  ++ L+D   K + L++A+++L+ M +    P+++T + L+    K G 
Sbjct: 327 MRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQ 386

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A+E F+ +   G +P+   YNS+I  +         + L++ M  +G       Y  
Sbjct: 387 VRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNT 446

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    + G    A ++   M+ +   P + + + L+  + +    D AR+ FD M++  
Sbjct: 447 LIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQA 506

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD    ++++  Y    L+D A  LL E+      P   TYT LVD   ++  + EA 
Sbjct: 507 VLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEAR 566

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
           ++L ++++ G  P      +L D + RAG    A + L  +     Q     +  +I G 
Sbjct: 567 RVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIGGF 626

Query: 548 LAGGFLQDAQRV 559
              G L++A+++
Sbjct: 627 CGTGDLEEARKI 638



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 124/270 (45%), Gaps = 5/270 (1%)

Query: 244 AELVLSEESFQT----NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLV 299
           + L+L EE   T    ++  Y+ LID   K     +A R+   M      PD++T + L+
Sbjct: 424 SALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLI 483

Query: 300 HMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
             + K   +D A+  F+ +      PD   +++++  Y NAG       L++ M+ S   
Sbjct: 484 GGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCS 543

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
                Y +L+  F + G +  A ++   M     QP + + T L++A+ +AG P  A   
Sbjct: 544 PDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRL 603

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD-GFEPGPATYTVLVDWLG 478
            + M+  G +P+     S+I  +     L++A  +L  LE+D   +     Y V++D L 
Sbjct: 604 LEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDGLC 663

Query: 479 RLQLINEAEQLLGKISELGEAPPFKIQVSL 508
           R   ++ A +LL  I + G  P   I V+L
Sbjct: 664 RTGRMSAALELLEAIKQSGTPPRHDIYVAL 693



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/354 (23%), Positives = 150/354 (42%), Gaps = 7/354 (1%)

Query: 210 LLAEWKEL-LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAH 267
           LL E KE  L P+ + +  ++    R+      +K+   ++ E     N+  Y+ L+   
Sbjct: 183 LLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMV-ENGCMPNLVTYNTLLSGL 241

Query: 268 AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK 327
            +   +++A  +L +M E G+ PD  +   L+    K G +D A + FE   +    PD 
Sbjct: 242 CRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDV 301

Query: 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNI 387
             Y+++I     AG+      L + M  +  E     + AL+    +   ++ A Q+   
Sbjct: 302 VAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLET 361

Query: 388 MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447
           M      P + + + L++   + G    A+  F  MI  G +P+     S+I  +   N 
Sbjct: 362 MEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNG 421

Query: 448 LDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVS 507
           +D AL L+ E+   G  P   TY  L+D L +     EA +L G +      P       
Sbjct: 422 VDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSC 481

Query: 508 LCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRV 559
           L   + +  +E+  +    F +  K+ + PD   F  ++ G    G + DA+R+
Sbjct: 482 LIGGFCK--LERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERL 533



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 151/349 (43%), Gaps = 17/349 (4%)

Query: 220 PSRIDWINLLDRL----REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLED 275
           P+ I + +L+D L    + ++ Q  FK   +++     + NV  Y+ LI      N ++ 
Sbjct: 369 PNVITYSSLIDGLCKTGQVRDAQEVFK--RMIV--RGIEPNVVTYNSLIHGFCMTNGVDS 424

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A  ++++M   G +PDI+T   L+    K G    A   F  +++    PD   Y+ +I 
Sbjct: 425 ALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIG 484

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
            +    +  +  +L D M+   +      +  L+  +   G V  A ++   M   +  P
Sbjct: 485 GFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSP 544

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
            + + T LV+ + + G   +AR     M + G +P+     ++I A+ +      A  LL
Sbjct: 545 DVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLL 604

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI--SELGEAPPFKIQVSLCDMYA 513
            E+  +G +P   TY  L+        + EA ++L ++   E  +A  F  +V + D   
Sbjct: 605 EEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKILERLERDENCKADMFAYRVMM-DGLC 663

Query: 514 RAGIEKKALQALGFLEAKKEQMGP---DDFERIINGLLAGGFLQDAQRV 559
           R G    AL+    LEA K+   P   D +  +I GL  G  L  A  V
Sbjct: 664 RTGRMSAALE---LLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEV 709



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 149/350 (42%), Gaps = 38/350 (10%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           ++ F  NV  Y++L +A  +   +++   ILK     GI P++ T  V++    K+G+LD
Sbjct: 17  QQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVIQGLCKSGDLD 76

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMS----------------LVDMM 353
           +A E  E +R  G  PD  +YN +I A   A      +                 ++D +
Sbjct: 77  KACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSMECEKNVITWTIMIDGL 136

Query: 354 ITS----------------GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
             +                G   +E  Y  L+  F +   V  A  +   M+     P +
Sbjct: 137 CKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNV 196

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
            + + ++  + +    D A   F  M+  G  P+     ++++   +  L+D+A  LL E
Sbjct: 197 VTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDE 256

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVS-LCDMYARAG 516
           + + G +P   +Y  L+  L +   I+ A ++    S  G+ PP  +  S L     +AG
Sbjct: 257 MRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSN-GDCPPDVVAYSTLIAGLCKAG 315

Query: 517 IEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLME 564
              +A +   F + ++    PD   F  +++GL  G  LQ+AQ+V   ME
Sbjct: 316 RLDEACKL--FEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETME 363



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 88/401 (21%), Positives = 170/401 (42%), Gaps = 27/401 (6%)

Query: 198 ILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLREQN----TQLYFKVAELVLSEES 252
           I +L K  + +  L  ++ +  + + I W  ++D L + N       YF      + ++ 
Sbjct: 101 IHALCKARNTAKALDYFRSMECEKNVITWTIMIDGLCKANRLPEATTYFAK----MKKKG 156

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
              N   Y+ LI+   K + +  A  +LK+M E+G+ P++VT + ++H + +   +D A 
Sbjct: 157 TVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAY 216

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           + F  +  +G  P+   YN+++      G       L+D M   G++  +  Y  L+   
Sbjct: 217 KLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGL 276

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + G +  A ++       +  P + + + L+    +AG  D+A   F+ M     +PD 
Sbjct: 277 CKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDV 336

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               +++    K + L +A  +L  +E     P   TY+ L+D L +   + +A+++  +
Sbjct: 337 VTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKR 396

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAG 550
           +   G  P      SL   +        AL  L   E       PD   +  +I+GL   
Sbjct: 397 MIVRGIEPNVVTYNSLIHGFCMTNGVDSAL--LLMEEMTATGCLPDIITYNTLIDGLCKT 454

Query: 551 GFLQDAQRVHGLMEAQ--------------GFAASERLKVA 577
           G   +A R+ G M+A+              GF   ER+ +A
Sbjct: 455 GRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMA 495



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 88/416 (21%), Positives = 156/416 (37%), Gaps = 76/416 (18%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E     NV  YS +I    ++  ++ A ++ ++M ENG +P++VT   L+    + G 
Sbjct: 187 MKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGL 246

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSM----------------------------IMAY-- 337
           +D A E  + +R  G QPDK  Y+++                            ++AY  
Sbjct: 247 MDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYST 306

Query: 338 -----VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
                  AG+      L + M  +  E     + AL+    +   ++ A Q+   M    
Sbjct: 307 LIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRN 366

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P + + + L++   + G    A+  F  MI  G +P+     S+I  +   N +D AL
Sbjct: 367 CTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSAL 426

Query: 453 NLLLELEKDGF-----------------------------------EPGPATYTVLVDWL 477
            L+ E+   G                                     P   TY+ L+   
Sbjct: 427 LLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGF 486

Query: 478 GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP 537
            +L+ I+ A  L   + +    P      +L + Y  AG+   A + L   E       P
Sbjct: 487 CKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLE--EMVASDCSP 544

Query: 538 D--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQPT 591
           D   +  +++G    G + +A+RV   M  +G   +     ALI +  F R  +PT
Sbjct: 545 DVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDA--FCRAGKPT 598


>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 583

 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 141/294 (47%), Gaps = 3/294 (1%)

Query: 256 NVRDYSKLIDAHAKENC---LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           NV  Y+ L+D + K      +  AE  +K+M  N I P+ VT   L+  + K  N+  AK
Sbjct: 234 NVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKICPNEVTFNTLIDGFCKDENVAAAK 293

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           +AFE ++  G +P+   YNS+I    N G+ +  + L D M+  G++ +   Y AL+  F
Sbjct: 294 KAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGF 353

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            +   ++ A ++ + +  +E  P + +   +++AY + G  ++  S    M+  G  P+ 
Sbjct: 354 CKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNV 413

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
                +IA   +K  L  A  LL E+E  G +    TY +L+D L +      AE+LL +
Sbjct: 414 STYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNAEKLLNE 473

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
           +  LG  P      +L D Y   G  K AL     +E +++Q     +  +I G
Sbjct: 474 MFNLGLKPNHVTYNTLMDGYCMEGKLKAALNVRTRMEKERKQPNVVTYNVLIKG 527



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 126/281 (44%)

Query: 220 PSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERI 279
           P+ + +  L+D   +       K A   + ++  + N+  Y+ LI+       LE+A  +
Sbjct: 271 PNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDL 330

Query: 280 LKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339
             KM   G+ P+IVT   L++ + K   +  A + F+ +      P+   +N+MI AY  
Sbjct: 331 WDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCK 390

Query: 340 AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLES 399
            G  + G SL   M+  GI  +   Y  L+    +  D++ A ++ N M  +  +  + +
Sbjct: 391 EGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVT 450

Query: 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELE 459
             +L++   +      A    + M  LG KP+     +++  Y  +  L  ALN+   +E
Sbjct: 451 YNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAALNVRTRME 510

Query: 460 KDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
           K+  +P   TY VL+    ++  +  A  LL ++ E G  P
Sbjct: 511 KERKQPNVVTYNVLIKGYCKINKLEAANGLLNEMLEKGLNP 551



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 151/332 (45%), Gaps = 13/332 (3%)

Query: 240 YFKVAELVLSEESFQTNVRDY---------SKLIDAHAKENCLEDAERILKKMNENGIVP 290
           Y K  EL  + E+F T  +DY         + L+ A  KEN + D E + K+M +  I  
Sbjct: 140 YVKNLELHCAYEAF-TRAKDYGFKLSLTSCNPLLSALVKENKIGDVEYVYKEMIKRRIHT 198

Query: 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV---NAGQPKLGM 347
           ++ T  + ++   +AG L++A++A E +++ G  P+   YN+++  Y    +AG+     
Sbjct: 199 NLNTFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAE 258

Query: 348 SLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAY 407
           + +  M+ + I  +E  +  L+  F +  +V  A +    M+ +  +P + +   L+   
Sbjct: 259 AFMKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGL 318

Query: 408 GQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGP 467
              G  ++A   +D M+ LG KP+     ++I  + KK ++ +A  +  ++ K    P  
Sbjct: 319 CNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNV 378

Query: 468 ATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGF 527
            T+  ++D   +  ++ E   L   + + G  P       L     R    + A + L  
Sbjct: 379 ITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNE 438

Query: 528 LEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           +E K  +     +  +I+GL      ++A+++
Sbjct: 439 MENKGLKGDVVTYNILIDGLCKNDKSRNAEKL 470



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 88/192 (45%), Gaps = 1/192 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +S++    NV  ++ +IDA+ KE  +E+   +   M + GI+P++ T   L+    +  +
Sbjct: 369 VSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQD 428

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L  AKE    + + G + D   YN +I       + +    L++ M   G++ +   Y  
Sbjct: 429 LQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNT 488

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+  +   G ++ A  +   M  E  QP + +  +L++ Y +    + A    + M+  G
Sbjct: 489 LMDGYCMEGKLKAALNVRTRMEKERKQPNVVTYNVLIKGYCKINKLEAANGLLNEMLEKG 548

Query: 428 HKPDDRCTASMI 439
             P +R T  ++
Sbjct: 549 LNP-NRTTYDIV 559



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 61/289 (21%), Positives = 115/289 (39%), Gaps = 7/289 (2%)

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           +LV  Y K   L  A EAF   + +GF+      N ++ A V   +      +   MI  
Sbjct: 135 MLVLAYVKNLELHCAYEAFTRAKDYGFKLSLTSCNPLLSALVKENKIGDVEYVYKEMIKR 194

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAY---GQAGDP 413
            I  +   +   +    + G +  A      M+     P + +   LV+ Y   G AG  
Sbjct: 195 RIHTNLNTFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKM 254

Query: 414 DQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVL 473
            +A +    M+     P++    ++I  + K   +  A     E++K G +P   TY  L
Sbjct: 255 YKAEAFMKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSL 314

Query: 474 VDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE 533
           ++ L     + EA  L  K+  LG  P      +L + + +  + K+A +   F +  K+
Sbjct: 315 INGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKV--FDDVSKQ 372

Query: 534 QMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
           ++ P+   F  +I+     G +++   +   M  +G   +      LI+
Sbjct: 373 ELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIA 421


>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 719

 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 78/338 (23%), Positives = 155/338 (45%), Gaps = 12/338 (3%)

Query: 222 RIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILK 281
           RI W+ L  R+ ++            +S      NV   + +++A  K+  +E     L 
Sbjct: 202 RIGWVELAWRIYQE------------ISRSGVGVNVYTLNIMVNALCKDGKMEKVGTFLS 249

Query: 282 KMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAG 341
           ++ E G+ PDIVT   L+  YS  G ++ A E   ++ S GF P    YN++I      G
Sbjct: 250 EVQEKGVYPDIVTYNTLISAYSSQGLMEEAFELMHAMPSKGFSPGVYTYNTVINGLCKHG 309

Query: 342 QPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCT 401
           + +    +   M+ SG+      Y +LL    + GD      I + MR  +  P L   +
Sbjct: 310 KYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDAVETENIFSDMRSRDVVPDLVCFS 369

Query: 402 LLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD 461
            ++  + ++G+ D+A   F+ +   G  PD+     +I  Y +K ++ +A+NL  E+ + 
Sbjct: 370 SMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQ 429

Query: 462 GFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKA 521
           G      TY  ++  L + +++ EA++L  +++E G  P       L D + + G  + A
Sbjct: 430 GCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNA 489

Query: 522 LQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           ++    ++ K+ ++    +  +++G    G +  A+ +
Sbjct: 490 MELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEI 527



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 128/287 (44%), Gaps = 6/287 (2%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ ++    K   L +A+++  +M E G+ PD  T T+L+  + K GNL  A E F
Sbjct: 434 DVVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAMELF 493

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + ++    + D   YN+++  +   G       +   M++  I  +   +  L+ +    
Sbjct: 494 KKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNALCSK 553

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A ++ + M  +  +PT+  C  +++ Y ++G+        + MI  G  PD    
Sbjct: 554 GHLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRSGNASDGEIFLEKMISEGFVPDCISY 613

Query: 436 ASMIAAYGKKNLLDKALNLLLELE--KDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
            ++I  + K+  + KA  L+ ++E  + G  P   TY  ++    R   + EAE +L K+
Sbjct: 614 NTLIYGFVKEENMSKAFGLVKKMEEKQGGLVPDVFTYNSILHGFCRENQMKEAEAVLRKM 673

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFL-EAKKEQMGPDD 539
            E G  P      SL + +     +    +A  F  E  +    PDD
Sbjct: 674 IERGVNPDRSTYTSLINGFVS---QDNLTEAFRFHDEMLQRGFSPDD 717



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 134/320 (41%), Gaps = 8/320 (2%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI  + ++  + +A  +  +M + G   D+VT   ++H   K   L  A + F  + 
Sbjct: 403 YTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMT 462

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  PD      +I  +   G  +  M L   M    I+     Y  LL  F + GD+ 
Sbjct: 463 ERGLFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDID 522

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A +I   M  +E  PT  S ++LV A    G   +A   +D MI    KP      SMI
Sbjct: 523 TAKEIWADMVSKEILPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIKPTVMICNSMI 582

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL--G 497
             Y +          L ++  +GF P   +Y  L+    + + +++A  L+ K+ E   G
Sbjct: 583 KGYCRSGNASDGEIFLEKMISEGFVPDCISYNTLIYGFVKEENMSKAFGLVKKMEEKQGG 642

Query: 498 EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ-MGPD--DFERIINGLLAGGFLQ 554
             P      S+   + R   E +  +A   L    E+ + PD   +  +ING ++   L 
Sbjct: 643 LVPDVFTYNSILHGFCR---ENQMKEAEAVLRKMIERGVNPDRSTYTSLINGFVSQDNLT 699

Query: 555 DAQRVHGLMEAQGFAASERL 574
           +A R H  M  +GF+  ++ 
Sbjct: 700 EAFRFHDEMLQRGFSPDDKF 719



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 116/256 (45%), Gaps = 1/256 (0%)

Query: 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320
           S L++A  K + +E  E I   M    +VPD+V  + ++ +++++GNLD+A   F S++ 
Sbjct: 335 SLLMEACKKGDAVE-TENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKE 393

Query: 321 HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRG 380
            G  PD  +Y  +I  Y   G     M+L + M+  G       Y  +L    +   +  
Sbjct: 394 AGLIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGE 453

Query: 381 AGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIA 440
           A ++ N M      P   + T+L++ + + G+   A   F  M     K D     +++ 
Sbjct: 454 ADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLD 513

Query: 441 AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
            +GK   +D A  +  ++      P P ++++LV+ L     ++EA ++  ++      P
Sbjct: 514 GFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIKP 573

Query: 501 PFKIQVSLCDMYARAG 516
              I  S+   Y R+G
Sbjct: 574 TVMICNSMIKGYCRSG 589



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 98/222 (44%), Gaps = 6/222 (2%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E+  + +V  Y+ L+D   K   ++ A+ I   M    I+P  ++ ++LV+     G+
Sbjct: 496 MKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNALCSKGH 555

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L  A   ++ + S   +P   + NSMI  Y  +G    G   ++ MI+ G       Y  
Sbjct: 556 LSEAFRVWDEMISKSIKPTVMICNSMIKGYCRSGNASDGEIFLEKMISEGFVPDCISYNT 615

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQ----PTLESCTLLVEAYGQAGDPDQARSNFDYM 423
           L+  F +  ++  A  +  + ++EE Q    P + +   ++  + +     +A +    M
Sbjct: 616 LIYGFVKEENMSKAFGL--VKKMEEKQGGLVPDVFTYNSILHGFCRENQMKEAEAVLRKM 673

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
           I  G  PD     S+I  +  ++ L +A     E+ + GF P
Sbjct: 674 IERGVNPDRSTYTSLINGFVSQDNLTEAFRFHDEMLQRGFSP 715



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/336 (18%), Positives = 130/336 (38%), Gaps = 36/336 (10%)

Query: 244 AELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS 303
           A  +L  + +  ++   + LI +  +   +E A RI ++++ +G+  ++ T  ++V+   
Sbjct: 177 AFTLLRSKGYTVSIDACNALIGSLVRIGWVELAWRIYQEISRSGVGVNVYTLNIMVNALC 236

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363
           K G +++       ++  G  PD   YN++I AY + G  +    L+  M + G      
Sbjct: 237 KDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYSSQGLMEEAFELMHAMPSKG------ 290

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
                                        F P + +   ++    + G  ++A+  F  M
Sbjct: 291 -----------------------------FSPGVYTYNTVINGLCKHGKYERAKEVFAEM 321

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483
           +R G  PD     S++    KK    +  N+  ++      P    ++ ++    R   +
Sbjct: 322 LRSGLSPDSTTYRSLLMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNL 381

Query: 484 NEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERI 543
           ++A      + E G  P   I   L   Y R G+  +A+     +  +   M    +  I
Sbjct: 382 DKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTI 441

Query: 544 INGLLAGGFLQDAQRVHGLMEAQG-FAASERLKVAL 578
           ++GL     L +A ++   M  +G F  S  L + +
Sbjct: 442 LHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTILI 477



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 72/346 (20%), Positives = 130/346 (37%), Gaps = 21/346 (6%)

Query: 243 VAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMY 302
           V +L  +  +F+      S +I    +   L DA+  + +M     V  +     LV  Y
Sbjct: 89  VDQLGFNFPNFKHTSLSLSAMIHILVRSGRLSDAQSCVLRMIRRSGVSRVEIVNSLVSTY 148

Query: 303 SKAGNLDR-----------------AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKL 345
           S  G+ D                  A EAF  LRS G+       N++I + V  G  +L
Sbjct: 149 SNCGSNDSVFDLLIRTFVQARKLREAYEAFTLLRSKGYTVSIDACNALIGSLVRIGWVEL 208

Query: 346 GMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVE 405
              +   +  SG+  +      ++ +  + G +   G   + ++ +   P + +   L+ 
Sbjct: 209 AWRIYQEISRSGVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLIS 268

Query: 406 AYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
           AY   G  ++A      M   G  P      ++I    K    ++A  +  E+ + G  P
Sbjct: 269 AYSSQGLMEEAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSP 328

Query: 466 GPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
              TY  L+    +     E E +   +      P      S+  ++ R+G   KAL  +
Sbjct: 329 DSTTYRSLLMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKAL--M 386

Query: 526 GFLEAKKEQMGPDD--FERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
            F   K+  + PD+  +  +I G    G + +A  +   M  QG A
Sbjct: 387 YFNSVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCA 432



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 40/73 (54%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ ++    +EN +++AE +L+KM E G+ PD  T T L++ +    NL  A    
Sbjct: 646 DVFTYNSILHGFCRENQMKEAEAVLRKMIERGVNPDRSTYTSLINGFVSQDNLTEAFRFH 705

Query: 316 ESLRSHGFQPDKK 328
           + +   GF PD K
Sbjct: 706 DEMLQRGFSPDDK 718


>gi|297724361|ref|NP_001174544.1| Os05g0583900 [Oryza sativa Japonica Group]
 gi|42491383|gb|AAS16889.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|255676609|dbj|BAH93272.1| Os05g0583900 [Oryza sativa Japonica Group]
          Length = 467

 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 132/274 (48%), Gaps = 3/274 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V   + L++   K   + +A R+  +M   G+ P+ VT T L+H Y   G  ++    F
Sbjct: 37  DVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALF 96

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E +R  G +P+   YN +I  +   G+ +   SL D M   GI R+   Y  L+    + 
Sbjct: 97  EEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRH 156

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A ++ ++MR E  +P++ +  LLV+ YG+AG    A   F+ M   G +P     
Sbjct: 157 GKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTY 216

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +IA + +   + +A   L ++++ G EP   TYT+L+D   R   + +A ++L  + +
Sbjct: 217 NMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEILAGMEK 276

Query: 496 LG---EAPPFKIQVSLCDMYARAGIEKKALQALG 526
            G   +A  + + V    M       +K  Q++G
Sbjct: 277 AGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMG 310



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 106/235 (45%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ LI    +   L DA ++L  M   G  P I+T  +LV  Y KAG +  A   F
Sbjct: 142 NVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFF 201

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +++ GFQP    YN +I  +  A         +  M   G+E ++  Y  L+ SFA+ 
Sbjct: 202 NQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARE 261

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
             +  A +I   M     +    +  +LV A    G+   AR  F  M   G +P +   
Sbjct: 262 NHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIY 321

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
             MI  YG++    KAL L++E+ + G  P  A+Y + +  L +     EAE LL
Sbjct: 322 DMMIYGYGREGSSYKALKLIMEMRQKGLIPNSASYGLTIRVLCKDDKCQEAEALL 376



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 124/279 (44%), Gaps = 2/279 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+  +      E    + ++M   G+ P++ T   L+  + + G  +RA+  F+ + 
Sbjct: 76  YTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMP 135

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G   +   YN++I      G+      L+DMM T G   S   +  L+  + + G + 
Sbjct: 136 VRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMS 195

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A    N M+   FQP+  +  +L+  + +A D  +A      M   G +P       +I
Sbjct: 196 NALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILI 255

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            ++ ++N + KA  +L  +EK G E    TY VLV  L     + +A +L   + E G  
Sbjct: 256 DSFARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVE 315

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
           P   I   +   Y R G   KAL+ +  +E +++ + P+
Sbjct: 316 PSNVIYDMMIYGYGREGSSYKALKLI--MEMRQKGLIPN 352



 Score = 46.2 bits (108), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 69/147 (46%), Gaps = 3/147 (2%)

Query: 211 LAEWKEL-LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHA 268
           L++ KE  L+P+++ +  L+D   RE +    F++    + +   + +   Y  L+ A  
Sbjct: 236 LSDMKERGLEPTKVTYTILIDSFARENHMGKAFEILA-GMEKAGLEVDAHTYGVLVRALC 294

Query: 269 KENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKK 328
            E  ++DA ++ + M E G+ P  V   ++++ Y + G+  +A +    +R  G  P+  
Sbjct: 295 MEGNMKDARKLFQSMGEKGVEPSNVIYDMMIYGYGREGSSYKALKLIMEMRQKGLIPNSA 354

Query: 329 VYNSMIMAYVNAGQPKLGMSLVDMMIT 355
            Y   I       + +   +L+D M T
Sbjct: 355 SYGLTIRVLCKDDKCQEAEALLDDMET 381


>gi|222632709|gb|EEE64841.1| hypothetical protein OsJ_19698 [Oryza sativa Japonica Group]
          Length = 496

 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 132/274 (48%), Gaps = 3/274 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V   + L++   K   + +A R+  +M   G+ P+ VT T L+H Y   G  ++    F
Sbjct: 37  DVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALF 96

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E +R  G +P+   YN +I  +   G+ +   SL D M   GI R+   Y  L+    + 
Sbjct: 97  EEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRH 156

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A ++ ++MR E  +P++ +  LLV+ YG+AG    A   F+ M   G +P     
Sbjct: 157 GKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTY 216

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +IA + +   + +A   L ++++ G EP   TYT+L+D   R   + +A ++L  + +
Sbjct: 217 NMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEILAGMEK 276

Query: 496 LG---EAPPFKIQVSLCDMYARAGIEKKALQALG 526
            G   +A  + + V    M       +K  Q++G
Sbjct: 277 AGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMG 310



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 106/235 (45%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ LI    +   L DA ++L  M   G  P I+T  +LV  Y KAG +  A   F
Sbjct: 142 NVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFF 201

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +++ GFQP    YN +I  +  A         +  M   G+E ++  Y  L+ SFA+ 
Sbjct: 202 NQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARE 261

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
             +  A +I   M     +    +  +LV A    G+   AR  F  M   G +P +   
Sbjct: 262 NHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIY 321

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
             MI  YG++    KAL L++E+ + G  P  A+Y + +  L +     EAE LL
Sbjct: 322 DMMIYGYGREGSSYKALKLIMEMRQKGLIPNSASYGLTIRVLCKDDKCQEAEALL 376



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 124/279 (44%), Gaps = 2/279 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+  +      E    + ++M   G+ P++ T   L+  + + G  +RA+  F+ + 
Sbjct: 76  YTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMP 135

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G   +   YN++I      G+      L+DMM T G   S   +  L+  + + G + 
Sbjct: 136 VRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMS 195

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A    N M+   FQP+  +  +L+  + +A D  +A      M   G +P       +I
Sbjct: 196 NALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILI 255

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            ++ ++N + KA  +L  +EK G E    TY VLV  L     + +A +L   + E G  
Sbjct: 256 DSFARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVE 315

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
           P   I   +   Y R G   KAL+ +  +E +++ + P+
Sbjct: 316 PSNVIYDMMIYGYGREGSSYKALKLI--MEMRQKGLIPN 352



 Score = 46.2 bits (108), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 61/126 (48%), Gaps = 3/126 (2%)

Query: 211 LAEWKEL-LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHA 268
           L++ KE  L+P+++ +  L+D   RE +    F++    + +   + +   Y  L+ A  
Sbjct: 236 LSDMKERGLEPTKVTYTILIDSFARENHMGKAFEILA-GMEKAGLEVDAHTYGVLVRALC 294

Query: 269 KENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKK 328
            E  ++DA ++ + M E G+ P  V   ++++ Y + G+  +A +    +R  G  P+  
Sbjct: 295 MEGNMKDARKLFQSMGEKGVEPSNVIYDMMIYGYGREGSSYKALKLIMEMRQKGLIPNSA 354

Query: 329 VYNSMI 334
            Y   I
Sbjct: 355 SYGLTI 360


>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
          Length = 552

 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 88/382 (23%), Positives = 168/382 (43%), Gaps = 50/382 (13%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +  E    +V  Y+ L+  + K  CL ++  +  +M + G+VPD+VT T L+H   KAGN
Sbjct: 107 MVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGN 166

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L++A      +R  G + ++  + ++I  +   G     +  V+ M   GI+ S   Y A
Sbjct: 167 LEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNA 226

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA----------- 416
           L+  + + G +  A ++   M  +  +P + + + ++  Y + G+ D A           
Sbjct: 227 LINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKG 286

Query: 417 -------------------RSN-----FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
                              R N     F+ M++LG +PD+    ++I  + K+  ++KAL
Sbjct: 287 VLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKAL 346

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP----------- 501
           +L  E+ + G  P   TY+VL++ L +     EA +LL K+      P            
Sbjct: 347 SLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCC 406

Query: 502 ----FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQ 557
               FK  V+L   +   G+ K+A +    +  +  ++    +  +I+G   GG ++ A 
Sbjct: 407 SKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKAL 466

Query: 558 RVHGLMEAQGFAASERLKVALI 579
             H  M   GF+ +    ++L+
Sbjct: 467 SFHKQMLRSGFSPNSTSTISLV 488



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 146/320 (45%), Gaps = 4/320 (1%)

Query: 242 KVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM 301
           +V  L+  E + + N+  ++ +++   K   +E A ++  +M   G+ PD+V+   L+  
Sbjct: 66  RVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSG 125

Query: 302 YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS 361
           Y K G L  +   F  +   G  PD   + S+I A   AG  +  ++LV  M   G+  +
Sbjct: 126 YCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMN 185

Query: 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421
           E  + AL+  F + G +  A      MR    QP++     L+  Y + G  D AR    
Sbjct: 186 EVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIR 245

Query: 422 YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ 481
            M     KPD    +++I+ Y K   LD A  L  ++ K G  P   TY+ L+  L   +
Sbjct: 246 EMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEK 305

Query: 482 LINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--D 539
            +N+A +L   + +LG  P      +L D + + G  +KAL      E  ++ + PD   
Sbjct: 306 RLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHD--EMIRKGVLPDVVT 363

Query: 540 FERIINGLLAGGFLQDAQRV 559
           +  +INGL      ++A R+
Sbjct: 364 YSVLINGLSKSARTKEAHRL 383



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 134/306 (43%), Gaps = 9/306 (2%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ L+ A      LE+A  ++  M   G  P+ VT   LV  + +AG LD A+   
Sbjct: 9   NVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVV 68

Query: 316 ESLRSHG-FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
             +R  G  +P+   +NSM+     AG+ +    + D M+  G+      Y  LL  + +
Sbjct: 69  SLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCK 128

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
            G +  +  + + M      P + + T L+ A  +AG+ +QA +    M   G + ++  
Sbjct: 129 VGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVT 188

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
             ++I  + KK  LD AL  + E+ K G +P    Y  L++   +L  ++ A +L+ ++ 
Sbjct: 189 FTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREME 248

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG--PD--DFERIINGLLAG 550
                P      ++   Y + G    A Q    L  K  + G  PD   +  +I GL   
Sbjct: 249 AKRVKPDVVTYSTIISGYCKVGNLDSAFQ----LNQKMLKKGVLPDAITYSSLIRGLCEE 304

Query: 551 GFLQDA 556
             L DA
Sbjct: 305 KRLNDA 310



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 130/286 (45%), Gaps = 1/286 (0%)

Query: 283 MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
           M  +G+ P++ T  +LV      G L+ A      +R  G  P+   YN+++ A+  AG+
Sbjct: 1   MVRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE 60

Query: 343 PKLGMSLVDMMITSGIERSEEI-YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCT 401
                 +V +M   G  +   + + +++    + G + GA ++ + M  E   P + S  
Sbjct: 61  LDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYN 120

Query: 402 LLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD 461
            L+  Y + G   ++ + F  M + G  PD     S+I A  K   L++A+ L+ ++ + 
Sbjct: 121 TLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRER 180

Query: 462 GFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKA 521
           G      T+T L+D   +   +++A   + ++ + G  P      +L + Y + G    A
Sbjct: 181 GLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLA 240

Query: 522 LQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
            + +  +EAK+ +     +  II+G    G L  A +++  M  +G
Sbjct: 241 RELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKG 286



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 72/327 (22%), Positives = 138/327 (42%), Gaps = 42/327 (12%)

Query: 187 ITGKCK--LITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVA 244
           I G CK   + D +L++E+           K  +QPS + +  L++         Y K+ 
Sbjct: 193 IDGFCKKGFLDDALLAVEEMR---------KCGIQPSVVCYNALING--------YCKLG 235

Query: 245 ELVLSEE--------SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTST 296
            + L+ E          + +V  YS +I  + K   L+ A ++ +KM + G++PD +T +
Sbjct: 236 RMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYS 295

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
            L+    +   L+ A E FE++   G QPD+  Y ++I  +   G  +  +SL D MI  
Sbjct: 296 SLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRK 355

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT---------------LESCT 401
           G+      Y  L+   ++    + A ++   +  E+  P                 +S  
Sbjct: 356 GVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVV 415

Query: 402 LLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD 461
            L++ +   G   +A   +  M+    K D    + +I  + +   + KAL+   ++ + 
Sbjct: 416 ALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRS 475

Query: 462 GFEPGPATYTVLVDWLGRLQLINEAEQ 488
           GF P   +   LV  L    ++ EA+ 
Sbjct: 476 GFSPNSTSTISLVRGLFEEGMVVEADN 502



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 61/271 (22%), Positives = 113/271 (41%), Gaps = 25/271 (9%)

Query: 215 KELLQPSRIDWINLLDRLREQN-----TQLYFKVAELVLSEESFQTNVRDYSKLIDAHAK 269
           K+ + P  I + +L+  L E+       +L+  + +L +  + F      Y+ LID H K
Sbjct: 284 KKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFT-----YTTLIDGHCK 338

Query: 270 ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKV 329
           E  +E A  +  +M   G++PD+VT +VL++  SK+     A      L      PD   
Sbjct: 339 EGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIK 398

Query: 330 YNSM-----------IMAYVNAGQPKLGMSLVDMMITSGIERS----EEIYLALLRSFAQ 374
           Y+++           ++A +     K  M   D +  S ++R+      +Y  L+    +
Sbjct: 399 YDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCR 458

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
            G+VR A      M    F P   S   LV    + G   +A +    ++      D   
Sbjct: 459 GGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQDLLTCCPLADAEA 518

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
           + ++I    K+  +D  +++L  + +DG  P
Sbjct: 519 SKALIDLNRKEGNVDALIDVLCGMARDGLLP 549


>gi|357123530|ref|XP_003563463.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Brachypodium distachyon]
          Length = 862

 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 142/323 (43%), Gaps = 2/323 (0%)

Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311
           + + ++  Y+ L+ A A  +  + AE +L+ M E G++PD  +   +V  +++AG+L R 
Sbjct: 240 AVRPDLTTYNTLLAAAAVRSLNDQAEMLLRAMLEAGVLPDTASYRHIVDAFARAGDLSRV 299

Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
            E F  +   G  PD   Y  ++ A+   G     ++++  M   G   +   Y  LL  
Sbjct: 300 AELFREMADTGHTPDPSAYLGLMEAHTRVGATAEAVAVLRQMQADGCAPTAATYRVLLDL 359

Query: 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
           + + G   G  ++   MR     P   +  +L   +G  G   +    F  M+R G +PD
Sbjct: 360 YGRQGRFDGVRELFREMRT-AVPPDTATYNVLFSVFGDGGFFKEVVELFHDMLRTGIEPD 418

Query: 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
                 ++ A G+  L + A  +L  + K+G  P    YT LV+ LG   +  EA     
Sbjct: 419 METCEGVLVACGQGGLHEDAREVLDYITKEGMVPTAKAYTGLVEALGHAAMYEEAYVAFN 478

Query: 492 KISELGEAPPFKIQVSLCDMYARAGIEKKALQALG-FLEAKKEQMGPDDFERIINGLLAG 550
            ++E+G  P  +   SL +++A+ G+ ++A         +   Q   D F+ +I     G
Sbjct: 479 MMTEIGSLPTIETYNSLANVFAKGGLFQEAESIFSRMTNSAGIQKNKDSFDALIEAYCQG 538

Query: 551 GFLQDAQRVHGLMEAQGFAASER 573
             L DA + +  M    F   ER
Sbjct: 539 AQLDDAVKAYMEMRKSRFNPDER 561



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/274 (21%), Positives = 106/274 (38%), Gaps = 18/274 (6%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIV-PDIVTSTVLVHMYSKAGN--LDRAK 312
            ++D++ +    ++    + + R+ K M       PD     +++ +  + G   LD+  
Sbjct: 96  TLQDFAAVYREFSRRGDWQRSVRLFKYMQRQSWCRPDEHIHAIVIGVLGRQGPALLDKCL 155

Query: 313 EAFESLRSHGFQPDKKV---YNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
           E F     H    D +    Y S+I AY      +   +L+D M  +G+  +   Y  +L
Sbjct: 156 EVF-----HDLPADSRTALSYTSLIAAYARNALHEEARALLDQMKAAGVAPTAATYNTVL 210

Query: 370 RSFAQCGDVRGAGQITNIMRIE-------EFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
            + A+  D      +   +  E         +P L +   L+ A       DQA      
Sbjct: 211 AACARATDPPVPFDMLLGLFAEMRHDVSPAVRPDLTTYNTLLAAAAVRSLNDQAEMLLRA 270

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
           M+  G  PD      ++ A+ +   L +   L  E+   G  P P+ Y  L++   R+  
Sbjct: 271 MLEAGVLPDTASYRHIVDAFARAGDLSRVAELFREMADTGHTPDPSAYLGLMEAHTRVGA 330

Query: 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
             EA  +L ++   G AP       L D+Y R G
Sbjct: 331 TAEAVAVLRQMQADGCAPTAATYRVLLDLYGRQG 364



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 92/232 (39%), Gaps = 1/232 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L          ++   +   M   GI PD+ T   ++    + G  + A+E  + + 
Sbjct: 387 YNVLFSVFGDGGFFKEVVELFHDMLRTGIEPDMETCEGVLVACGQGGLHEDAREVLDYIT 446

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P  K Y  ++ A  +A   +      +MM   G   + E Y +L   FA+ G  +
Sbjct: 447 KEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNSLANVFAKGGLFQ 506

Query: 380 GAGQITNIMRIEE-FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
            A  I + M      Q   +S   L+EAY Q    D A   +  M +    PD+R    +
Sbjct: 507 EAESIFSRMTNSAGIQKNKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGV 566

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           + AY    ++D++     E++ +   P    Y +++    R     +A  LL
Sbjct: 567 LNAYCIAGVIDESKEQFEEIQSNMAVPSIIAYCMMLSLYARNDRWADAYDLL 618



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/240 (20%), Positives = 103/240 (42%), Gaps = 14/240 (5%)

Query: 302 YSKAGNLDRAKEAFESLRSHGF-QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
           +S+ G+  R+   F+ ++   + +PD+ ++  +I      G   L   L          R
Sbjct: 107 FSRRGDWQRSVRLFKYMQRQSWCRPDEHIHAIVIGVLGRQGPALLDKCLEVFHDLPADSR 166

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
           +   Y +L+ ++A+      A  + + M+     PT  +   ++ A  +A DP      F
Sbjct: 167 TALSYTSLIAAYARNALHEEARALLDQMKAAGVAPTAATYNTVLAACARATDPPVP---F 223

Query: 421 DYMIRL----------GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATY 470
           D ++ L            +PD     +++AA   ++L D+A  LL  + + G  P  A+Y
Sbjct: 224 DMLLGLFAEMRHDVSPAVRPDLTTYNTLLAAAAVRSLNDQAEMLLRAMLEAGVLPDTASY 283

Query: 471 TVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEA 530
             +VD   R   ++   +L  ++++ G  P     + L + + R G   +A+  L  ++A
Sbjct: 284 RHIVDAFARAGDLSRVAELFREMADTGHTPDPSAYLGLMEAHTRVGATAEAVAVLRQMQA 343



 Score = 44.3 bits (103), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 45/215 (20%), Positives = 84/215 (39%), Gaps = 36/215 (16%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +++E      + Y+ L++A       E+A      M E G +P I T   L ++++K G 
Sbjct: 445 ITKEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNSLANVFAKGGL 504

Query: 308 LDRAKEAFESL-RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
              A+  F  +  S G Q +K  ++++I AY    Q       +D  + + +E       
Sbjct: 505 FQEAESIFSRMTNSAGIQKNKDSFDALIEAYCQGAQ-------LDDAVKAYME------- 550

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
                                MR   F P   S   ++ AY  AG  D+++  F+ +   
Sbjct: 551 ---------------------MRKSRFNPDERSLEGVLNAYCIAGVIDESKEQFEEIQSN 589

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD 461
              P       M++ Y + +    A +LL E++ +
Sbjct: 590 MAVPSIIAYCMMLSLYARNDRWADAYDLLEEMKTN 624



 Score = 40.0 bits (92), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 64/134 (47%), Gaps = 4/134 (2%)

Query: 241 FKVAELVLSEES----FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTST 296
           F+ AE + S  +     Q N   +  LI+A+ +   L+DA +   +M ++   PD  +  
Sbjct: 505 FQEAESIFSRMTNSAGIQKNKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLE 564

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
            +++ Y  AG +D +KE FE ++S+   P    Y  M+  Y    +      L++ M T+
Sbjct: 565 GVLNAYCIAGVIDESKEQFEEIQSNMAVPSIIAYCMMLSLYARNDRWADAYDLLEEMKTN 624

Query: 357 GIERSEEIYLALLR 370
               + ++  ++++
Sbjct: 625 RASSTHQVIASMIQ 638


>gi|218197339|gb|EEC79766.1| hypothetical protein OsI_21159 [Oryza sativa Indica Group]
          Length = 410

 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 132/274 (48%), Gaps = 3/274 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V   + L++   K   + +A R+  +M   G+ P+ VT T L+H Y   G  ++    F
Sbjct: 37  DVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALF 96

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E +R  G +P+   YN +I  +   G+ +   SL D M   GI R+   Y  L+    + 
Sbjct: 97  EEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRH 156

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A ++ ++MR E  +P++ +  LLV+ YG+AG    A   F+ M   G +P     
Sbjct: 157 GKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTY 216

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +IA + +   + +A   L ++++ G EP   TYT+L+D   R   + +A ++L  + +
Sbjct: 217 NMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEILAGMEK 276

Query: 496 LG---EAPPFKIQVSLCDMYARAGIEKKALQALG 526
            G   +A  + + V    M       +K  Q++G
Sbjct: 277 AGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMG 310



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 114/259 (44%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ LI    +   L DA ++L  M   G  P I+T  +LV  Y KAG +  A   F
Sbjct: 142 NVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFF 201

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +++ GFQP    YN +I  +  A         +  M   G+E ++  Y  L+ SFA+ 
Sbjct: 202 NQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARE 261

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
             +  A +I   M     +    +  +LV A    G+   AR  F  M   G +P +   
Sbjct: 262 NHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIY 321

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             MI  YG++    KAL L++E+ + G  P  A+Y + +  L +     EAE LL  +  
Sbjct: 322 DMMIYGYGREGSSYKALKLIMEMRQKGLIPNSASYGLTIRVLCKDDKCQEAEALLDDMVR 381

Query: 496 LGEAPPFKIQVSLCDMYAR 514
            G      I  +L D  AR
Sbjct: 382 AGLQTSESICQALLDAKAR 400



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 142/325 (43%), Gaps = 4/325 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+  +      E    + ++M   G+ P++ T   L+  + + G  +RA+  F+ + 
Sbjct: 76  YTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMP 135

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G   +   YN++I      G+      L+DMM T G   S   +  L+  + + G + 
Sbjct: 136 VRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMS 195

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A    N M+   FQP+  +  +L+  + +A D  +A      M   G +P       +I
Sbjct: 196 NALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILI 255

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            ++ ++N + KA  +L  +EK G E    TY VLV  L     + +A +L   + E G  
Sbjct: 256 DSFARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVE 315

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQ 557
           P   I   +   Y R G   KAL+ +  +E +++ + P+   +   I  L      Q+A+
Sbjct: 316 PSNVIYDMMIYGYGREGSSYKALKLI--MEMRQKGLIPNSASYGLTIRVLCKDDKCQEAE 373

Query: 558 RVHGLMEAQGFAASERLKVALISSQ 582
            +   M   G   SE +  AL+ ++
Sbjct: 374 ALLDDMVRAGLQTSESICQALLDAK 398


>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
          Length = 850

 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 144/325 (44%), Gaps = 35/325 (10%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E+    +V  Y+ +++   KE  L +A+ +  +M E G+ PD  T T L++ Y K GN++
Sbjct: 561 EQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMN 620

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
           +A   FE +     +PD   YN++I  +    + +    L + MI+  I  +   Y  L+
Sbjct: 621 KAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILI 680

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
             +   G V  A ++ + M  + F+ T+ +C  +V+ Y +AG+  +A      M+  G  
Sbjct: 681 NGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIV 740

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     ++I  + K+  +D+A  L+ ++E  G  P   TY V+++   R   + EAE +
Sbjct: 741 PDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELI 800

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLA 549
           + K+ E G  P      SL                                   ING + 
Sbjct: 801 MLKMIERGVNPDRSTYTSL-----------------------------------INGHVT 825

Query: 550 GGFLQDAQRVHGLMEAQGFAASERL 574
              L++A RVH  M  +GF   ++ 
Sbjct: 826 QNNLKEAFRVHDEMLQRGFVPDDKF 850



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 139/299 (46%), Gaps = 4/299 (1%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           Q NV   + +I+A  K   +E+ +  L  M E G+ PD+VT   L++ Y + G L+ A E
Sbjct: 355 QVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFE 414

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
             +S+   G +P    YN++I      G+      ++D M+  G+      Y  LL    
Sbjct: 415 LMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECC 474

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           +  ++  A +I + M  +   P L S + L+    + G  DQA   F  M   G  PD+ 
Sbjct: 475 RNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNV 534

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
               +I  + +  ++ +AL +  E+ + G      TY  +++ L + ++++EA++L  ++
Sbjct: 535 IYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEM 594

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAG 550
           +E G  P F    +L + Y + G   KA+    F    +  + PD   +  +I+G   G
Sbjct: 595 TERGVFPDFYTFTTLINGYXKDGNMNKAVTL--FEMMIQRNLKPDVVTYNTLIDGFCKG 651



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 137/295 (46%), Gaps = 12/295 (4%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+    + + + DAERI  +M   G+VPD+V+ + L+ + SK G LD+A + F  ++
Sbjct: 466 YNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMK 525

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G  PD  +Y  +I  +   G     + + D M+  G       Y  +L    +   + 
Sbjct: 526 NAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLS 585

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++   M      P   + T L+  Y + G+ ++A + F+ MI+   KPD     ++I
Sbjct: 586 EADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLI 645

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             + K + ++K   L  ++      P   +Y +L++    +  ++EA +L  ++ E G  
Sbjct: 646 DGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKG-- 703

Query: 500 PPFKIQVSLCDM----YARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLL 548
             F+  +  C+     Y RAG   KA + L  +  K   + PD   +  +ING +
Sbjct: 704 --FEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKG--IVPDGITYNTLINGFI 754



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 75/335 (22%), Positives = 138/335 (41%), Gaps = 21/335 (6%)

Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVP--DIVTSTVL----------- 298
           +F+ +++ +S +I    +   L DA+ ++ +M     V   +IV S VL           
Sbjct: 231 NFKHSLQSFSAMIHILVRSRRLPDAQAVILRMVRKSGVSRVEIVESLVLTYGNCGSNPLV 290

Query: 299 ----VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMI 354
               V  Y +A  L    EAF  L+S G        NS++   V  G   L   +   ++
Sbjct: 291 FDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVV 350

Query: 355 TSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPD 414
            SG++ +      ++ +  +   +       + M  +   P + +   L+ AY + G  +
Sbjct: 351 RSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLE 410

Query: 415 QARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
           +A    D M   G KP      ++I    K     +A  +L E+ K G  P  ATY +L+
Sbjct: 411 EAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILL 470

Query: 475 DWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ 534
               R   + +AE++  ++   G  P      +L  + ++ G   +AL+   F + K   
Sbjct: 471 VECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKY--FRDMKNAG 528

Query: 535 MGPDD--FERIINGLLAGGFLQDAQRVHGLMEAQG 567
           + PD+  +  +I G    G + +A +V   M  QG
Sbjct: 529 LAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQG 563


>gi|414888268|tpg|DAA64282.1| TPA: hypothetical protein ZEAMMB73_921256 [Zea mays]
          Length = 868

 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 139/323 (43%), Gaps = 2/323 (0%)

Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311
           S + ++  Y+ L+ A A  +  + +E +L  M E G+ PD V+   +V  ++ AGNL RA
Sbjct: 246 SVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVSPDTVSYRHIVDAFASAGNLSRA 305

Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
            E F  + + G   D   Y  ++ A+   G     ++++  M   G   +   Y  LL  
Sbjct: 306 AELFSEMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQADGCAPTAATYRVLLDL 365

Query: 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
           + + G   G  Q+   MR     P   +  +L   +G  G   +    F  M++ G +PD
Sbjct: 366 YGRQGRFDGVRQLFREMRT-AVPPDTATYNVLFRVFGDGGFFKEVVELFHDMLKTGVQPD 424

Query: 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
                +++AA G   L   A  +L  + ++G  P    YT LV+ LG   +  EA     
Sbjct: 425 MVTCENVMAACGHGGLHGDAREVLEYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFN 484

Query: 492 KISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE-QMGPDDFERIINGLLAG 550
            ++E+G  P  +   +L   YAR G+ ++A      +      Q   D F+ +I     G
Sbjct: 485 MMTEIGSLPTLETYNALAFAYARGGLFQEAEAIFSRMSNNAGIQKSKDSFDALIEAYCQG 544

Query: 551 GFLQDAQRVHGLMEAQGFAASER 573
             L DA + +  M    F   ER
Sbjct: 545 SRLDDAVKAYMEMRKSRFNPDER 567



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 84/188 (44%), Gaps = 1/188 (0%)

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           DA  +L+ M   G+VP     T LV     A   + A  AF  +   G  P  + YN++ 
Sbjct: 443 DAREVLEYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTLETYNALA 502

Query: 335 MAYVNAGQPKLGMSLVDMMIT-SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
            AY   G  +   ++   M   +GI++S++ + AL+ ++ Q   +  A +    MR   F
Sbjct: 503 FAYARGGLFQEAEAIFSRMSNNAGIQKSKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRF 562

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
            P   S   ++ AY  AG  D+++  F+ +      P       M++ Y + +    A +
Sbjct: 563 NPDERSLEGVLNAYCIAGVIDESKEQFEELQSSVTMPSVIAYCMMLSLYARNDRWTDAYD 622

Query: 454 LLLELEKD 461
           LL E++ +
Sbjct: 623 LLEEMKTN 630



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 92/232 (39%), Gaps = 1/232 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L          ++   +   M + G+ PD+VT   ++      G    A+E  E + 
Sbjct: 393 YNVLFRVFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVLEYMT 452

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P    Y  ++ A  +A   +      +MM   G   + E Y AL  ++A+ G  +
Sbjct: 453 REGMVPTADAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTLETYNALAFAYARGGLFQ 512

Query: 380 GAGQITNIMRIEE-FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
            A  I + M      Q + +S   L+EAY Q    D A   +  M +    PD+R    +
Sbjct: 513 EAEAIFSRMSNNAGIQKSKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRFNPDERSLEGV 572

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           + AY    ++D++     EL+     P    Y +++    R     +A  LL
Sbjct: 573 LNAYCIAGVIDESKEQFEELQSSVTMPSVIAYCMMLSLYARNDRWTDAYDLL 624



 Score = 42.7 bits (99), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 64/134 (47%), Gaps = 4/134 (2%)

Query: 241 FKVAELVLSEESFQTNVR----DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTST 296
           F+ AE + S  S    ++     +  LI+A+ + + L+DA +   +M ++   PD  +  
Sbjct: 511 FQEAEAIFSRMSNNAGIQKSKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRFNPDERSLE 570

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
            +++ Y  AG +D +KE FE L+S    P    Y  M+  Y    +      L++ M T+
Sbjct: 571 GVLNAYCIAGVIDESKEQFEELQSSVTMPSVIAYCMMLSLYARNDRWTDAYDLLEEMKTN 630

Query: 357 GIERSEEIYLALLR 370
               + ++  +L++
Sbjct: 631 RASSTHQVIASLIK 644


>gi|413952776|gb|AFW85425.1| chloroplast RNA splicing4 [Zea mays]
          Length = 1435

 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 131/274 (47%), Gaps = 2/274 (0%)

Query: 218 LQPSRIDWINLLDRLREQ-NTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L+P  I +  L+    +  N +    V E +++ E  + ++  Y+ ++  H +    E+A
Sbjct: 289 LRPDVITYNTLISACSQSSNLEDAVTVFEDMIASEC-RPDLWTYNAMVSVHGRCGKAEEA 347

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
           ER+ +++ E G +PD +T   L++ ++K GN+D+ +   E L   GF+ ++  YN+MI  
Sbjct: 348 ERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMIHM 407

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           Y   G+  L + L D M   G       Y  ++ S  +   +  AG++   M     +PT
Sbjct: 408 YGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDAGLKPT 467

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           L + + L+ AY + G    A + FD MI  G KPD      M+  + +    +K L L  
Sbjct: 468 LIAFSALICAYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFARSGDTEKMLCLYR 527

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           ++  D + P    Y VL+  L +     E E+++
Sbjct: 528 KMMNDNYRPDDDMYQVLLVALAKEDKCEEIEEVI 561



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 131/263 (49%), Gaps = 2/263 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR--AKE 313
            V+ ++ ++  +A+    +DA ++L  M++ GI PD+V+   L++  SK+G L    A +
Sbjct: 220 TVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVALD 279

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
               +R  G +PD   YN++I A   +   +  +++ + MI S        Y A++    
Sbjct: 280 LLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHG 339

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           +CG    A ++   +  + F P   +   L+ A+ + G+ D+     + +++ G K ++ 
Sbjct: 340 RCGKAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEI 399

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
              +MI  YGK   LD A+ L  E+   G  P   TYTV++D LG++  I EA ++L  +
Sbjct: 400 TYNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDM 459

Query: 494 SELGEAPPFKIQVSLCDMYARAG 516
           ++ G  P      +L   YA+ G
Sbjct: 460 TDAGLKPTLIAFSALICAYAKGG 482



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 126/281 (44%), Gaps = 6/281 (2%)

Query: 253  FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
            +  N+  Y  +I      N   D E ++ +M   G  PD+     L++MY+ AGN DR  
Sbjct: 881  YLPNMHLYRSMISLLCHHNRFRDVELMIAEMEGAGFKPDLAILNALLNMYTAAGNFDRTT 940

Query: 313  EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
            + + S+   G +PD+  YN++I+ Y  + +P+ G +L++ M   G+    + Y +LL + 
Sbjct: 941  QVYRSILEAGLEPDEDTYNTLIVMYCRSFRPEEGFTLLNEMGKRGLTPKLQSYKSLLAAS 1000

Query: 373  AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            A+      A QI   MR + +Q       ++++ Y  AG+  +A +    M   G +P  
Sbjct: 1001 AKAELREQADQIFEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKEDGIEPTI 1060

Query: 433  RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
                 ++ +YG      +A N+L  L+    E     Y+ + D   +    N     L +
Sbjct: 1061 ATMHILMTSYGTAGQPREAENVLNNLKSSSLEVSTLPYSTVFDAYLKNGDYNHGTTKLLE 1120

Query: 493  ISELGEAPPFKI------QVSLCDMYARAGIEKKALQALGF 527
            +   G  P  ++        SLC+  A A +  K+LQ  GF
Sbjct: 1121 MKRDGVEPDHQVWTCFIRAASLCEQTADAILLLKSLQDCGF 1161



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 60/288 (20%), Positives = 132/288 (45%), Gaps = 7/288 (2%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L E+ F  +   Y+ L+ A AKE  ++  E   +++ + G   + +T   ++HMY K G 
Sbjct: 354 LVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMIHMYGKMGR 413

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           LD A   ++ +R+ G  PD   Y  MI +     +      +++ M  +G++ +   + A
Sbjct: 414 LDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDAGLKPTLIAFSA 473

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+ ++A+ G    A    + M     +P   +  ++++ + ++GD ++    +  M+   
Sbjct: 474 LICAYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFARSGDTEKMLCLYRKMMNDN 533

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
           ++PDD     ++ A  K++  ++   ++ ++E           T+L+    + + +++  
Sbjct: 534 YRPDDDMYQVLLVALAKEDKCEEIEEVIQDMELLCRMNLGIISTMLI----KARCVSQGA 589

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQM 535
           +LL K    G  P  K   S+ + Y    + +K  + L  LE   E +
Sbjct: 590 KLLKKACLQGYKPDIKSLRSIMNAYV---MTEKHEEGLSLLECICEHV 634



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 118/264 (44%), Gaps = 13/264 (4%)

Query: 234  EQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIV 293
            ++ TQ+Y  + E        + +   Y+ LI  + +    E+   +L +M + G+ P + 
Sbjct: 937  DRTTQVYRSILE-----AGLEPDEDTYNTLIVMYCRSFRPEEGFTLLNEMGKRGLTPKLQ 991

Query: 294  TSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMM 353
            +   L+   +KA   ++A + FE +RS  +Q ++ +Y+ M+  Y NAG      +L+ +M
Sbjct: 992  SYKSLLAASAKAELREQADQIFEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVM 1051

Query: 354  ITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDP 413
               GIE +      L+ S+   G  R A  + N ++    + +    + + +AY + GD 
Sbjct: 1052 KEDGIEPTIATMHILMTSYGTAGQPREAENVLNNLKSSSLEVSTLPYSTVFDAYLKNGDY 1111

Query: 414  DQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGF--------EP 465
            +   +    M R G +PD +     I A         A+ LL  L+  GF        E 
Sbjct: 1112 NHGTTKLLEMKRDGVEPDHQVWTCFIRAASLCEQTADAILLLKSLQDCGFDLPIRLLTER 1171

Query: 466  GPATYTVLVDWLGRLQLINEAEQL 489
             P+  + + ++L  L+ + ++  L
Sbjct: 1172 TPSLLSEIANYLEELEALEDSAAL 1195



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 66/307 (21%), Positives = 127/307 (41%), Gaps = 3/307 (0%)

Query: 263  LIDAHAKENCLEDAERILKKMNE-NGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSH 321
            +I+A+ K    + AE ++K + + +GI  D      L+H Y+++G  ++A+  F+++   
Sbjct: 752  IIEAYGKIKLWQQAEILVKGLRQASGI--DRRIWNALIHAYAESGLYEKARAVFDNMIKT 809

Query: 322  GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGA 381
            G  P     N M+ A +  G+      +V+ +     + S+   L LL +FA+ GDV   
Sbjct: 810  GPLPTVDSVNGMMRALIVDGRLDELYVVVEELQDMNFKISKSTVLLLLDAFAKAGDVFEV 869

Query: 382  GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441
             +I N M+   + P +     ++                  M   G KPD     +++  
Sbjct: 870  MKIYNGMKAAGYLPNMHLYRSMISLLCHHNRFRDVELMIAEMEGAGFKPDLAILNALLNM 929

Query: 442  YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
            Y      D+   +   + + G EP   TY  L+    R     E   LL ++ + G  P 
Sbjct: 930  YTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLIVMYCRSFRPEEGFTLLNEMGKRGLTPK 989

Query: 502  FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHG 561
             +   SL    A+A + ++A Q    + +K  Q+    +  ++      G    A+ +  
Sbjct: 990  LQSYKSLLAASAKAELREQADQIFEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLA 1049

Query: 562  LMEAQGF 568
            +M+  G 
Sbjct: 1050 VMKEDGI 1056



 Score = 42.4 bits (98), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 68/319 (21%), Positives = 146/319 (45%), Gaps = 33/319 (10%)

Query: 218 LQPSRIDWINLLDRL-REQNTQ----LYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC 272
           ++P R+ ++ +LD   R  +T+    LY K     +  ++++ +   Y  L+ A AKE+ 
Sbjct: 499 VKPDRLAYLVMLDVFARSGDTEKMLCLYRK-----MMNDNYRPDDDMYQVLLVALAKEDK 553

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
            E+ E +++ M     +   + ST+L+    KA  + +  +  +     G++PD K   S
Sbjct: 554 CEEIEEVIQDMELLCRMNLGIISTMLI----KARCVSQGAKLLKKACLQGYKPDIKSLRS 609

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           ++ AYV   + + G+SL++  I   +  S+++        ++C  +    + T+I   E+
Sbjct: 610 IMNAYVMTEKHEEGLSLLE-CICEHVSFSQDL-------ISECSIMLLCRKQTSISAYEQ 661

Query: 393 FQPTL------ESCTL---LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYG 443
           +   L      ++C L   L+    +A    +A   F  M  +G +       S+I+ Y 
Sbjct: 662 YSQRLMLKYPGQNCNLYEYLITCLIEAEFFSEACQVFCDMQFIGIEASKSIYESIISTYC 721

Query: 444 KKNLLDKALNLLLELEKDGFEPGP-ATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPF 502
           K    + A  L+ +  + G      +   ++++  G+++L  +AE L+  + +       
Sbjct: 722 KLGFPETAHRLMDDALQSGIPLNILSCRVIIIEAYGKIKLWQQAEILVKGLRQ-ASGIDR 780

Query: 503 KIQVSLCDMYARAGIEKKA 521
           +I  +L   YA +G+ +KA
Sbjct: 781 RIWNALIHAYAESGLYEKA 799



 Score = 40.4 bits (93), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 67/172 (38%), Gaps = 21/172 (12%)

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDK--ALN 453
           T++    ++  Y ++G  D AR   D M   G  PD     ++I A  K   L    AL+
Sbjct: 220 TVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVALD 279

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
           LL E+ + G  P   TY  L+    +   + +A  +   +      P      ++  ++ 
Sbjct: 280 LLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHG 339

Query: 514 RAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEA 565
           R G  ++A                   ER+   L+  GF+ DA   + L+ A
Sbjct: 340 RCGKAEEA-------------------ERLFRELVEKGFMPDAITYNSLLYA 372


>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
          Length = 694

 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 88/379 (23%), Positives = 167/379 (44%), Gaps = 50/379 (13%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           E    +V  Y+ L+  + K  CL ++  +  +M + G+VPD+VT T L+H   KAGNL++
Sbjct: 252 EGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQ 311

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A      +R  G + ++  + ++I  +   G     +  V+ M   GI+ S   Y AL+ 
Sbjct: 312 AVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALIN 371

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA-------------- 416
            + + G +  A ++   M  +  +P + + + ++  Y + G+ D A              
Sbjct: 372 GYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLP 431

Query: 417 ----------------RSN-----FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
                           R N     F+ M++LG +PD+    ++I  + K+  ++KAL+L 
Sbjct: 432 DAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLH 491

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP-------------- 501
            E+ + G  P   TY+VL++ L +     EA +LL K+      P               
Sbjct: 492 DEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKA 551

Query: 502 -FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVH 560
            FK  V+L   +   G+ K+A +    +  +  ++    +  +I+G   GG ++ A   H
Sbjct: 552 EFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFH 611

Query: 561 GLMEAQGFAASERLKVALI 579
             M   GF+ +    ++L+
Sbjct: 612 KQMLRSGFSPNSTSTISLV 630



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 146/320 (45%), Gaps = 4/320 (1%)

Query: 242 KVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM 301
           +V  L+  E + + N+  ++ +++   K   +E A ++  +M   G+ PD+V+   L+  
Sbjct: 208 RVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSG 267

Query: 302 YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS 361
           Y K G L  +   F  +   G  PD   + S+I A   AG  +  ++LV  M   G+  +
Sbjct: 268 YCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMN 327

Query: 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421
           E  + AL+  F + G +  A      MR    QP++     L+  Y + G  D AR    
Sbjct: 328 EVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIR 387

Query: 422 YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ 481
            M     KPD    +++I+ Y K   LD A  L  ++ K G  P   TY+ L+  L   +
Sbjct: 388 EMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEK 447

Query: 482 LINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--D 539
            +N+A +L   + +LG  P      +L D + + G  +KAL      E  ++ + PD   
Sbjct: 448 RLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHD--EMIRKGVLPDVVT 505

Query: 540 FERIINGLLAGGFLQDAQRV 559
           +  +INGL      ++A R+
Sbjct: 506 YSVLINGLSKSARTKEAHRL 525



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/296 (23%), Positives = 134/296 (45%), Gaps = 1/296 (0%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           L  A R L  M  +G+ P++ T  +LV      G L+ A      +R  G  P+   YN+
Sbjct: 133 LPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNT 192

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEI-YLALLRSFAQCGDVRGAGQITNIMRIE 391
           ++ A+  AG+      +V +M   G  +   + + +++    + G + GA ++ + M  E
Sbjct: 193 LVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVRE 252

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
              P + S   L+  Y + G   ++ + F  M + G  PD     S+I A  K   L++A
Sbjct: 253 GLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQA 312

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
           + L+ ++ + G      T+T L+D   +   +++A   + ++ + G  P      +L + 
Sbjct: 313 VALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALING 372

Query: 512 YARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
           Y + G    A + +  +EAK+ +     +  II+G    G L  A +++  M  +G
Sbjct: 373 YCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKG 428



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 134/306 (43%), Gaps = 9/306 (2%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ L+ A      LE+A  ++  M   G  P+ VT   LV  + +AG LD A+   
Sbjct: 151 NVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVV 210

Query: 316 ESLRSHG-FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
             +R  G  +P+   +NSM+     AG+ +    + D M+  G+      Y  LL  + +
Sbjct: 211 SLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCK 270

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
            G +  +  + + M      P + + T L+ A  +AG+ +QA +    M   G + ++  
Sbjct: 271 VGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVT 330

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
             ++I  + KK  LD AL  + E+ K G +P    Y  L++   +L  ++ A +L+ ++ 
Sbjct: 331 FTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREME 390

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG--PD--DFERIINGLLAG 550
                P      ++   Y + G    A Q    L  K  + G  PD   +  +I GL   
Sbjct: 391 AKRVKPDVVTYSTIISGYCKVGNLDSAFQ----LNQKMLKKGVLPDAITYSSLIRGLCEE 446

Query: 551 GFLQDA 556
             L DA
Sbjct: 447 KRLNDA 452



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 130/283 (45%), Gaps = 6/283 (2%)

Query: 287 GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLG 346
           G  P +     ++   S A +L  A+    S+  HG  P+   YN ++ A    G+ +  
Sbjct: 113 GYAPSVPAYNAVLLALSDA-SLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEA 171

Query: 347 MSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE-EFQPTLESCTLLVE 405
           + +V  M  +G   +   Y  L+ +F + G++ GA ++ ++MR E   +P L +   +V 
Sbjct: 172 VGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVN 231

Query: 406 AYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
              +AG  + AR  FD M+R G  PD     ++++ Y K   L ++L +  E+ + G  P
Sbjct: 232 GLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVP 291

Query: 466 GPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
              T+T L+    +   + +A  L+ ++ E G         +L D + + G    AL A+
Sbjct: 292 DVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAV 351

Query: 526 GFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQ 566
              E +K  + P    +  +ING    G +  A+ +   MEA+
Sbjct: 352 E--EMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAK 392



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 72/327 (22%), Positives = 138/327 (42%), Gaps = 42/327 (12%)

Query: 187 ITGKCK--LITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVA 244
           I G CK   + D +L++E+           K  +QPS + +  L++         Y K+ 
Sbjct: 335 IDGFCKKGFLDDALLAVEEMR---------KCGIQPSVVCYNALING--------YCKLG 377

Query: 245 ELVLSEE--------SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTST 296
            + L+ E          + +V  YS +I  + K   L+ A ++ +KM + G++PD +T +
Sbjct: 378 RMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYS 437

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
            L+    +   L+ A E FE++   G QPD+  Y ++I  +   G  +  +SL D MI  
Sbjct: 438 SLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRK 497

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT---------------LESCT 401
           G+      Y  L+   ++    + A ++   +  E+  P                 +S  
Sbjct: 498 GVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVV 557

Query: 402 LLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD 461
            L++ +   G   +A   +  M+    K D    + +I  + +   + KAL+   ++ + 
Sbjct: 558 ALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRS 617

Query: 462 GFEPGPATYTVLVDWLGRLQLINEAEQ 488
           GF P   +   LV  L    ++ EA+ 
Sbjct: 618 GFSPNSTSTISLVRGLFEEGMVVEADN 644



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/272 (22%), Positives = 113/272 (41%), Gaps = 25/272 (9%)

Query: 214 WKELLQPSRIDWINLLDRLREQN-----TQLYFKVAELVLSEESFQTNVRDYSKLIDAHA 268
            K+ + P  I + +L+  L E+       +L+  + +L +  + F      Y+ LID H 
Sbjct: 425 LKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFT-----YTTLIDGHC 479

Query: 269 KENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKK 328
           KE  +E A  +  +M   G++PD+VT +VL++  SK+     A      L      PD  
Sbjct: 480 KEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNI 539

Query: 329 VYNSM-----------IMAYVNAGQPKLGMSLVDMMITSGIERS----EEIYLALLRSFA 373
            Y+++           ++A +     K  M   D +  S ++R+      +Y  L+    
Sbjct: 540 KYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHC 599

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           + G+VR A      M    F P   S   LV    + G   +A +    ++      D  
Sbjct: 600 RGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQDLLTCCPLADAE 659

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
            + ++I    K+  +D  +++L  + +DG  P
Sbjct: 660 ASKALIDLNRKEGNVDALIDVLCGMARDGLLP 691


>gi|414888267|tpg|DAA64281.1| TPA: hypothetical protein ZEAMMB73_921256 [Zea mays]
          Length = 873

 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 139/323 (43%), Gaps = 2/323 (0%)

Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311
           S + ++  Y+ L+ A A  +  + +E +L  M E G+ PD V+   +V  ++ AGNL RA
Sbjct: 246 SVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVSPDTVSYRHIVDAFASAGNLSRA 305

Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
            E F  + + G   D   Y  ++ A+   G     ++++  M   G   +   Y  LL  
Sbjct: 306 AELFSEMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQADGCAPTAATYRVLLDL 365

Query: 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
           + + G   G  Q+   MR     P   +  +L   +G  G   +    F  M++ G +PD
Sbjct: 366 YGRQGRFDGVRQLFREMRT-AVPPDTATYNVLFRVFGDGGFFKEVVELFHDMLKTGVQPD 424

Query: 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
                +++AA G   L   A  +L  + ++G  P    YT LV+ LG   +  EA     
Sbjct: 425 MVTCENVMAACGHGGLHGDAREVLEYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFN 484

Query: 492 KISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE-QMGPDDFERIINGLLAG 550
            ++E+G  P  +   +L   YAR G+ ++A      +      Q   D F+ +I     G
Sbjct: 485 MMTEIGSLPTLETYNALAFAYARGGLFQEAEAIFSRMSNNAGIQKSKDSFDALIEAYCQG 544

Query: 551 GFLQDAQRVHGLMEAQGFAASER 573
             L DA + +  M    F   ER
Sbjct: 545 SRLDDAVKAYMEMRKSRFNPDER 567



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 84/188 (44%), Gaps = 1/188 (0%)

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           DA  +L+ M   G+VP     T LV     A   + A  AF  +   G  P  + YN++ 
Sbjct: 443 DAREVLEYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTLETYNALA 502

Query: 335 MAYVNAGQPKLGMSLVDMMIT-SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
            AY   G  +   ++   M   +GI++S++ + AL+ ++ Q   +  A +    MR   F
Sbjct: 503 FAYARGGLFQEAEAIFSRMSNNAGIQKSKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRF 562

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
            P   S   ++ AY  AG  D+++  F+ +      P       M++ Y + +    A +
Sbjct: 563 NPDERSLEGVLNAYCIAGVIDESKEQFEELQSSVTMPSVIAYCMMLSLYARNDRWTDAYD 622

Query: 454 LLLELEKD 461
           LL E++ +
Sbjct: 623 LLEEMKTN 630



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 92/232 (39%), Gaps = 1/232 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L          ++   +   M + G+ PD+VT   ++      G    A+E  E + 
Sbjct: 393 YNVLFRVFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVLEYMT 452

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P    Y  ++ A  +A   +      +MM   G   + E Y AL  ++A+ G  +
Sbjct: 453 REGMVPTADAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTLETYNALAFAYARGGLFQ 512

Query: 380 GAGQITNIMRIEE-FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
            A  I + M      Q + +S   L+EAY Q    D A   +  M +    PD+R    +
Sbjct: 513 EAEAIFSRMSNNAGIQKSKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRFNPDERSLEGV 572

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           + AY    ++D++     EL+     P    Y +++    R     +A  LL
Sbjct: 573 LNAYCIAGVIDESKEQFEELQSSVTMPSVIAYCMMLSLYARNDRWTDAYDLL 624



 Score = 42.7 bits (99), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 64/134 (47%), Gaps = 4/134 (2%)

Query: 241 FKVAELVLSEESFQTNVR----DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTST 296
           F+ AE + S  S    ++     +  LI+A+ + + L+DA +   +M ++   PD  +  
Sbjct: 511 FQEAEAIFSRMSNNAGIQKSKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRFNPDERSLE 570

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
            +++ Y  AG +D +KE FE L+S    P    Y  M+  Y    +      L++ M T+
Sbjct: 571 GVLNAYCIAGVIDESKEQFEELQSSVTMPSVIAYCMMLSLYARNDRWTDAYDLLEEMKTN 630

Query: 357 GIERSEEIYLALLR 370
               + ++  +L++
Sbjct: 631 RASSTHQVIASLIK 644


>gi|356575482|ref|XP_003555869.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Glycine max]
          Length = 576

 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 92/375 (24%), Positives = 168/375 (44%), Gaps = 7/375 (1%)

Query: 199 LSLEKEEDPSPLLAEWKELLQPSRIDWI--NLLDRLREQNTQLYFKVAE---LVLSEESF 253
           L + K+ D    +  W  L    + D I  NLL  +     +L +K AE   L L E   
Sbjct: 129 LRMRKQWDSIISICRWILLRSSFKPDVICYNLL--IEAFGQKLLYKEAESTYLQLLEARC 186

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
                 Y+ LI A+     LE AE +  +M   G+    V     ++   K GN D+A+E
Sbjct: 187 IPTEDTYALLIKAYCISGLLEKAEAVFAEMRNYGLPSSAVVYNAYINGLMKGGNSDKAEE 246

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            F+ ++    +P  + Y  +I  Y  AG+  + + L   M++   + +   Y AL+ +FA
Sbjct: 247 IFKRMKKDACKPTTETYTMLINLYGKAGKSFMALKLFHEMMSHDCKPNICTYTALVNAFA 306

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           + G    A ++   M+    +P + +   L+EAY +AG P  A   F  M  +G +PD  
Sbjct: 307 REGLCEKAEEVFEQMQEAGLEPDVYAYNALMEAYSRAGYPYGAAEIFSLMQHMGCEPDRA 366

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
               ++ AYGK    D A  +  ++++ G  P   ++ VL+    ++  +N+ E++L ++
Sbjct: 367 SYNILVDAYGKAGFQDDAEAVFKDMKRVGITPTMKSHMVLLSAYSKMGSVNKCEEILNQM 426

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFL 553
            + G      +  S+ ++Y R G   K  + L  +E          +  +IN     GF+
Sbjct: 427 CKSGLKLDTYVLNSMLNLYGRLGQFGKMEEVLRVMEKGSYVADISTYNILINRYGQAGFI 486

Query: 554 QDAQRVHGLMEAQGF 568
           +  + +  L+ ++G 
Sbjct: 487 ERMEDLFQLLPSKGL 501



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 125/276 (45%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + +++ +     Y+ LI+ + K      A ++  +M  +   P+I T T LV+ +++ G 
Sbjct: 251 MKKDACKPTTETYTMLINLYGKAGKSFMALKLFHEMMSHDCKPNICTYTALVNAFAREGL 310

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            ++A+E FE ++  G +PD   YN+++ AY  AG P     +  +M   G E     Y  
Sbjct: 311 CEKAEEVFEQMQEAGLEPDVYAYNALMEAYSRAGYPYGAAEIFSLMQHMGCEPDRASYNI 370

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+ ++ + G    A  +   M+     PT++S  +L+ AY + G  ++     + M + G
Sbjct: 371 LVDAYGKAGFQDDAEAVFKDMKRVGITPTMKSHMVLLSAYSKMGSVNKCEEILNQMCKSG 430

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            K D     SM+  YG+     K   +L  +EK  +    +TY +L++  G+   I   E
Sbjct: 431 LKLDTYVLNSMLNLYGRLGQFGKMEEVLRVMEKGSYVADISTYNILINRYGQAGFIERME 490

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
            L   +   G  P      S    Y++  +  K L+
Sbjct: 491 DLFQLLPSKGLKPDVVTWTSRIGAYSKKKLYLKCLE 526



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 112/254 (44%), Gaps = 35/254 (13%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  Y+ L++A A+E   E AE + ++M E G+ PD+     L+  YS+AG    A E F
Sbjct: 294 NICTYTALVNAFAREGLCEKAEEVFEQMQEAGLEPDVYAYNALMEAYSRAGYPYGAAEIF 353

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             ++  G +PD+  YN ++ AY  AG      ++   M   GI  + + ++ LL ++++ 
Sbjct: 354 SLMQHMGCEPDRASYNILVDAYGKAGFQDDAEAVFKDMKRVGITPTMKSHMVLLSAYSKM 413

Query: 376 GDVRGAGQITN--------------------------------IMRIEE---FQPTLESC 400
           G V    +I N                                ++R+ E   +   + + 
Sbjct: 414 GSVNKCEEILNQMCKSGLKLDTYVLNSMLNLYGRLGQFGKMEEVLRVMEKGSYVADISTY 473

Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
            +L+  YGQAG  ++    F  +   G KPD     S I AY KK L  K L +  E+  
Sbjct: 474 NILINRYGQAGFIERMEDLFQLLPSKGLKPDVVTWTSRIGAYSKKKLYLKCLEIFEEMID 533

Query: 461 DGFEPGPATYTVLV 474
           DG  P   T  VL+
Sbjct: 534 DGCYPDGGTAKVLL 547



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 117/274 (42%), Gaps = 17/274 (6%)

Query: 318 LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
           LRS  F+PD   YN +I A+      K   S    ++ +    +E+ Y  L++++   G 
Sbjct: 147 LRS-SFKPDVICYNLLIEAFGQKLLYKEAESTYLQLLEARCIPTEDTYALLIKAYCISGL 205

Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAY----GQAGDPDQARSNFDYMIRLGHKPDDR 433
           +  A  +   MR       L S  ++  AY     + G+ D+A   F  M +   KP   
Sbjct: 206 LEKAEAVFAEMR----NYGLPSSAVVYNAYINGLMKGGNSDKAEEIFKRMKKDACKPTTE 261

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
               +I  YGK      AL L  E+     +P   TYT LV+   R  L  +AE++  ++
Sbjct: 262 TYTMLINLYGKAGKSFMALKLFHEMMSHDCKPNICTYTALVNAFAREGLCEKAEEVFEQM 321

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG--PD--DFERIINGLLA 549
            E G  P      +L + Y+RAG    A +    +    + MG  PD   +  +++    
Sbjct: 322 QEAGLEPDVYAYNALMEAYSRAGYPYGAAEIFSLM----QHMGCEPDRASYNILVDAYGK 377

Query: 550 GGFLQDAQRVHGLMEAQGFAASERLKVALISSQT 583
            GF  DA+ V   M+  G   + +  + L+S+ +
Sbjct: 378 AGFQDDAEAVFKDMKRVGITPTMKSHMVLLSAYS 411



 Score = 43.1 bits (100), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 50/107 (46%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           V+ + S+  ++  Y+ LI+ + +   +E  E + + +   G+ PD+VT T  +  YSK  
Sbjct: 460 VMEKGSYVADISTYNILINRYGQAGFIERMEDLFQLLPSKGLKPDVVTWTSRIGAYSKKK 519

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMM 353
              +  E FE +   G  PD      ++ A  N  Q +   +++  M
Sbjct: 520 LYLKCLEIFEEMIDDGCYPDGGTAKVLLAACSNEDQTEQVTTVIRTM 566


>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 159/357 (44%), Gaps = 49/357 (13%)

Query: 186 PITGKCKLITDKILSLEKEEDPSPLLAEWKELLQ---PSRIDWINLL-DRLREQNTQLYF 241
           P  G C  + DK+++      P  +   + E+L+   P ++ + N+L ++  ++ +    
Sbjct: 187 PFHG-CGYLLDKMIN---SNSPVTIWTFYSEILEYGFPPKVQYYNILINKFCKEGS---I 239

Query: 242 KVAELVLSE---ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVL 298
           + A+L+ +E      +     ++ LI+   K   L++  R+ K M EN I PD+ T +VL
Sbjct: 240 RDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVL 299

Query: 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
           +H   K G LD A++ F+ ++  G +P+   + ++I     + +    M+    M+T G+
Sbjct: 300 IHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSAMNTYHQMLTMGV 359

Query: 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR- 417
           +    +Y  LL    + GDV  A ++ + MR+   +P   + T L++ Y + GD + A  
Sbjct: 360 KPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDGYCKEGDLESAME 419

Query: 418 ------------SNFDY----------------------MIRLGHKPDDRCTASMIAAYG 443
                        N  +                      M+  G KPDD     +I  Y 
Sbjct: 420 IRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYC 479

Query: 444 KKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
           KK  +     LL E++ +G +PG  TY VL++ L +   +  A  LL  +  LG  P
Sbjct: 480 KKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTP 536



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 69/346 (19%), Positives = 131/346 (37%), Gaps = 35/346 (10%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++   +FQ        L+D     N          ++ E G  P +    +L++ + K G
Sbjct: 178 LVRNSNFQIPFHGCGYLLDKMINSNSPVTIWTFYSEILEYGFPPKVQYYNILINKFCKEG 237

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           ++  AK  F  +R  G +P    +N++I     +     G  L   M  + I      Y 
Sbjct: 238 SIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYS 297

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+    + G +  A Q+ + M+    +P   + T L++   ++   D A + +  M+ +
Sbjct: 298 VLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSAMNTYHQMLTM 357

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD----------- 475
           G KPD     +++    K   ++KA  L+ E+   G +P   TYT L+D           
Sbjct: 358 GVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDGYCKEGDLESA 417

Query: 476 ------------------------WLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
                                      R   + +AE+ L ++ E G  P       + D 
Sbjct: 418 MEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDG 477

Query: 512 YARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQ 557
           Y + G  K   + L  ++    + G   +  ++NGL   G +++A 
Sbjct: 478 YCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNAN 523



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 68/152 (44%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LID + KE  LE A  I K MNE G+V D V  T L+  + + G +  A+     + 
Sbjct: 401 YTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMV 460

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +PD   Y  +I  Y   G  K+G  L+  M  +G +     Y  L+    + G ++
Sbjct: 461 EAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMK 520

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAG 411
            A  +   M      P   +  +L+E + + G
Sbjct: 521 NANMLLEAMLNLGVTPDDITYNILLEGHCKNG 552



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 98/215 (45%), Gaps = 3/215 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L++   K   +  A +++ +M   G+ PD +T T L+  Y K G+L+ A E  + + 
Sbjct: 366 YNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMN 425

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G   D   + ++I  +   G+ +     +  M+ +G++  +  Y  ++  + + G+V+
Sbjct: 426 EEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVK 485

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
              ++   M+I   +P + +  +L+    + G    A    + M+ LG  PDD     ++
Sbjct: 486 MGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNILL 545

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
             + K     KA +LL    + G     A YT LV
Sbjct: 546 EGHCKNG---KAEDLLKLRNEKGLIVDYAYYTSLV 577



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 79/160 (49%), Gaps = 2/160 (1%)

Query: 218 LQPSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           ++P +I +  L+D   +E + +   ++ +  ++EE    +   ++ LI    ++  + DA
Sbjct: 394 MKPDKITYTTLIDGYCKEGDLESAMEIRK-GMNEEGVVLDNVAFTALISGFCRDGRVRDA 452

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
           ER L++M E G+ PD  T T+++  Y K GN+    +  + ++ +G +P    YN ++  
Sbjct: 453 ERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNG 512

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
               GQ K    L++ M+  G+   +  Y  LL    + G
Sbjct: 513 LCKQGQMKNANMLLEAMLNLGVTPDDITYNILLEGHCKNG 552



 Score = 42.0 bits (97), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 28/135 (20%), Positives = 59/135 (43%)

Query: 355 TSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPD 414
           T+G   S  ++ AL+ ++   G V  A Q   ++R   FQ     C  L++    +  P 
Sbjct: 146 TAGTRCSNFVFDALMIAYWDSGFVSDAIQCFRLVRNSNFQIPFHGCGYLLDKMINSNSPV 205

Query: 415 QARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
              + +  ++  G  P  +    +I  + K+  +  A  +  E+ K G  P   ++  L+
Sbjct: 206 TIWTFYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLI 265

Query: 475 DWLGRLQLINEAEQL 489
           + L + + ++E  +L
Sbjct: 266 NGLCKSRNLDEGFRL 280


>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 136/304 (44%), Gaps = 4/304 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N++ ++ LI   +++   E A  +  KM  +G+VP  VT   L++     G  + A   F
Sbjct: 341 NIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIF 400

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + + SHG  P  + YN +I  +   G  +  M + D M+ +G   +   Y  L+  + + 
Sbjct: 401 KWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQ 460

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G++  A ++  IM+    +P   + T L+  + + G  + A S F  M+  G  P+    
Sbjct: 461 GNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTY 520

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I  Y     +D AL L  ++ + G  P   TY V++    +   I+EAE   GK+ +
Sbjct: 521 TAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVK 580

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFL 553
            G  P      S  D   R G    A +   F E +K    P+   +  +I GL   G  
Sbjct: 581 QGLLPNVITYTSFIDGLCRNGRTGLAFKI--FHEMEKRNYFPNLYTYSSLIYGLCQEGRA 638

Query: 554 QDAQ 557
           +DA+
Sbjct: 639 EDAE 642



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 137/310 (44%), Gaps = 2/310 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ LI  + K+  L +A R+L+ M  NG+ PD  T T L+  +S+ G L+ A   F
Sbjct: 446 NVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLF 505

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +  HG  P+   Y ++I  Y N  +    ++L   M+ SG   S + Y  ++  F++ 
Sbjct: 506 YGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKT 565

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
             +  A      M  +   P + + T  ++   + G    A   F  M +  + P+    
Sbjct: 566 NSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTY 625

Query: 436 ASMIAAYGKKNLLDKA--LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
           +S+I    ++   + A   NLL  L   G EP   TYT LV  L       EA+QL+  +
Sbjct: 626 SSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSM 685

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFL 553
            + G  P  +I  +L     +    + AL     ++    Q+   D++ +I  L    F+
Sbjct: 686 QKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKENFI 745

Query: 554 QDAQRVHGLM 563
           ++AQ +   M
Sbjct: 746 EEAQCIFQTM 755



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 73/334 (21%), Positives = 144/334 (43%), Gaps = 4/334 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + ++  +  V  Y+  + +     C  +A  +L KM + G VP+I T T L+   S+ G 
Sbjct: 298 MVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGK 357

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            + A   +  + + G  P    YN++I      G+ +   ++   M++ G   S + Y  
Sbjct: 358 FEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNE 417

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           +++ F   GD++ A  I + M      P + +   L+  Y + G+ + A    + M   G
Sbjct: 418 IIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNG 477

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            KPD      +I+ + +   L+ A +L   + + G  P   TYT ++D    L  +++A 
Sbjct: 478 LKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDAL 537

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIIN 545
            L  K+ E G  P  +    +   +++     +A    G  +  K+ + P+   +   I+
Sbjct: 538 ALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCG--KMVKQGLLPNVITYTSFID 595

Query: 546 GLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
           GL   G    A ++   ME + +  +     +LI
Sbjct: 596 GLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLI 629



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/323 (21%), Positives = 138/323 (42%), Gaps = 6/323 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++ +I+   K+  +++A+ I+  +      P+  T T L+  + +  NLD A   F+ + 
Sbjct: 205 FNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMV 264

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P+   Y+++I    + G+ +  M +++ M+  GIE +   Y   L S    G   
Sbjct: 265 KDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSS 324

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++   M+     P +++ T L+    + G  + A   +  M+  G  P      ++I
Sbjct: 325 EAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALI 384

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
                +   + A  +   +   G  P   TY  ++     +  I +A  +  K+ + G +
Sbjct: 385 NQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSS 444

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQ 557
           P      +L   Y + G    A++ L  +  K   + PD   +  +I+G   GG L+ A 
Sbjct: 445 PNVITYNTLIYGYCKQGNLNNAMRLLEIM--KGNGLKPDAWTYTELISGFSRGGKLEHAT 502

Query: 558 RV-HGLMEAQGFAASERLKVALI 579
            + +G+ME  G + +     A+I
Sbjct: 503 SLFYGMME-HGISPNHVTYTAII 524



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/264 (21%), Positives = 107/264 (40%), Gaps = 7/264 (2%)

Query: 234 EQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIV 293
           E  T L++      + E     N   Y+ +ID +     ++DA  +  KM E+G +P   
Sbjct: 499 EHATSLFYG-----MMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQ 553

Query: 294 TSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMM 353
           T  V++  +SK  ++  A+     +   G  P+   Y S I      G+  L   +   M
Sbjct: 554 TYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEM 613

Query: 354 ITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF--QPTLESCTLLVEAYGQAG 411
                  +   Y +L+    Q G    A     + R+  +  +P +++ T LV+     G
Sbjct: 614 EKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEG 673

Query: 412 DPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYT 471
              +A      M + G +P +    +++    K   ++ ALN+   ++  GF+   + Y 
Sbjct: 674 RCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYK 733

Query: 472 VLVDWLGRLQLINEAEQLLGKISE 495
            L+  L +   I EA+ +   + E
Sbjct: 734 ALICALCKENFIEEAQCIFQTMLE 757



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 90/196 (45%), Gaps = 18/196 (9%)

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
           +P+L +   ++    + G   +A+    ++ R    P+     S+I  + + + LD A  
Sbjct: 199 RPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFA 258

Query: 454 LLLELEKDGFEPGPATYTVLVDWL---GRLQLINEAEQLLGKISELGEAPPFKIQ----V 506
           +   + KDG +P   TY+ L++ L   GRL+   EA  +L ++ + G  P         V
Sbjct: 259 MFDRMVKDGCDPNSVTYSTLINGLCSEGRLE---EAMDMLEEMVQKGIEPTVYTYTIPLV 315

Query: 507 SLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLME 564
           SLCD    AG   +A++ LG  + KK    P+   F  +I+GL   G  + A  ++  M 
Sbjct: 316 SLCD----AGCSSEAVELLG--KMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKML 369

Query: 565 AQGFAASERLKVALIS 580
           A G   +     ALI+
Sbjct: 370 ADGLVPTTVTYNALIN 385



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 96/245 (39%), Gaps = 5/245 (2%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK--E 313
           NV  Y+  ID   +      A +I  +M +    P++ T + L++   + G  + A+   
Sbjct: 586 NVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYN 645

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
               L  +G +P+   Y +++      G+      LV  M   G++ SEEIY ALL    
Sbjct: 646 LLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGEC 705

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           +   V  A  I   M    FQ  L     L+ A  +    ++A+  F  M+      D+ 
Sbjct: 706 KNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEV 765

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL---INEAEQLL 490
               ++    K+   D  L LL  +E         TY +L   L  L     I +  Q L
Sbjct: 766 AWTVLLDGLLKEGETDLCLKLLHVMESRNCTLNFQTYVMLARELSALDCAIKIPQISQQL 825

Query: 491 GKISE 495
           G + +
Sbjct: 826 GIVKD 830


>gi|115487378|ref|NP_001066176.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|77553036|gb|ABA95832.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113648683|dbj|BAF29195.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|125535802|gb|EAY82290.1| hypothetical protein OsI_37500 [Oryza sativa Indica Group]
 gi|125578525|gb|EAZ19671.1| hypothetical protein OsJ_35247 [Oryza sativa Japonica Group]
          Length = 716

 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 139/315 (44%), Gaps = 6/315 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L       +V  Y+ L+D + +   LE+A R  ++M E G  PD+ T T+L++   K  N
Sbjct: 398 LKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILMNGSRKVRN 457

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L   +E F+ + S G QPD   YN+ I A +  G       L ++MI+ GI      Y  
Sbjct: 458 LAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVMISRGISSDTVTYNI 517

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
            L    + G+++ A  +   M  +  QP   + T L+ A+ + G   +AR  FD M+  G
Sbjct: 518 FLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREARDIFDGMLVSG 577

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P        I AY ++  L  A     ++ ++G  P   TY VL+  L R+   N A 
Sbjct: 578 LPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCRMGRTNLAY 637

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
           Q   ++ E G +P       L D   + G  ++A++   + E  +  + PD      N L
Sbjct: 638 QHFHEMLERGLSPNKYTYTLLIDGNCKEGNWEEAIRL--YSEMHQHGIHPDHCTH--NAL 693

Query: 548 LAGGFLQDAQRVHGL 562
             G    + Q  H +
Sbjct: 694 FKG--FDEGQSKHAI 706



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 107/241 (44%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++ LI  +     +E A  +  +M   GIVP +VT   ++H   ++GN++ A+  F  +R
Sbjct: 305 FNPLITGYFARGSVEKAGALQLEMENEGIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMR 364

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G  PD   YNS+I  Y  AG  K  + L   +  +G+  S   Y  LL  + + GD+ 
Sbjct: 365 AMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLE 424

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A +    M  +  QP + + T+L+    +  +    R  FD M+  G +PD     + I
Sbjct: 425 EARRFKQEMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRI 484

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
           +A        +A  L   +   G      TY + +D L +   + +A  L  K+   G  
Sbjct: 485 SAELILGSTSEAFQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQ 544

Query: 500 P 500
           P
Sbjct: 545 P 545



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 103/229 (44%), Gaps = 3/229 (1%)

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL--RSHGFQPDKKVYN 331
           +D   +  +M + GI P IVT   L+  + + G +D+A +    +  R  G  P    YN
Sbjct: 213 DDMRSVYAEMLQLGIEPSIVTYNTLLDSFFREGRVDQAAKLLREMEARPGGCLPSDVTYN 272

Query: 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391
            +I      G+ +    LVD M  S  + S   +  L+  +   G V  AG +   M  E
Sbjct: 273 VVINGLARKGELEKAAQLVDRMRMSK-KASAFTFNPLITGYFARGSVEKAGALQLEMENE 331

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
              PT+ +   ++    ++G+ + AR  F  M  +G  PD     S+I  Y K   L +A
Sbjct: 332 GIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEA 391

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
           L L  +L++ G  P   TY +L+D   RL  + EA +   ++ E G  P
Sbjct: 392 LWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQP 440



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 87/195 (44%), Gaps = 2/195 (1%)

Query: 241 FKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
           F++ E+++S     ++   Y+  +D   K   L+DA  +  KM  +G+ PD +T T L+H
Sbjct: 497 FQLTEVMISR-GISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIH 555

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
            + + G L  A++ F+ +   G  P    Y   I AY   G           M+  G+  
Sbjct: 556 AHCERGRLREARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRP 615

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
           +E  Y  L+ +  + G    A Q  + M      P   + TLL++   + G+ ++A   +
Sbjct: 616 NEVTYNVLIHALCRMGRTNLAYQHFHEMLERGLSPNKYTYTLLIDGNCKEGNWEEAIRLY 675

Query: 421 DYMIRLGHKPDDRCT 435
             M + G  P D CT
Sbjct: 676 SEMHQHGIHP-DHCT 689



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 78/360 (21%), Positives = 132/360 (36%), Gaps = 39/360 (10%)

Query: 245 ELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK 304
           +L +  E     V  Y+ +I    +   +E A     +M   G++PD++T   L++ Y K
Sbjct: 325 QLEMENEGIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCK 384

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
           AGNL  A   F  L+  G  P    YN ++  Y   G  +        M+  G +     
Sbjct: 385 AGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVST 444

Query: 365 Y------------LALLRSF----------AQC-------------GDVRGAGQITNIMR 389
           Y            LA++R F            C             G    A Q+T +M 
Sbjct: 445 YTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVMI 504

Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD 449
                    +  + ++   ++G+   A   +  M+  G +PD      +I A+ ++  L 
Sbjct: 505 SRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLR 564

Query: 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLC 509
           +A ++   +   G  P   TYTV +    R   +  A     K+ E G  P       L 
Sbjct: 565 EARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLI 624

Query: 510 DMYARAGIEKKALQALGFLEAKKEQMGPDDFER--IINGLLAGGFLQDAQRVHGLMEAQG 567
               R G    A Q   F E  +  + P+ +    +I+G    G  ++A R++  M   G
Sbjct: 625 HALCRMGRTNLAYQH--FHEMLERGLSPNKYTYTLLIDGNCKEGNWEEAIRLYSEMHQHG 682



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 112/258 (43%), Gaps = 7/258 (2%)

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
           AF  +  HG  P  K  N ++ A  +  +     S+   M+  GIE S   Y  LL SF 
Sbjct: 183 AFREMAHHGVPPFIKECNLVLRALRDEARWDDMRSVYAEMLQLGIEPSIVTYNTLLDSFF 242

Query: 374 QCGDVRGAGQITNIM--RIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
           + G V  A ++   M  R     P+  +  +++    + G+ ++A    D M R+  K  
Sbjct: 243 REGRVDQAAKLLREMEARPGGCLPSDVTYNVVINGLARKGELEKAAQLVDRM-RMSKKAS 301

Query: 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
                 +I  Y  +  ++KA  L LE+E +G  P   TY  ++  + R   +  A     
Sbjct: 302 AFTFNPLITGYFARGSVEKAGALQLEMENEGIVPTVVTYNTIIHGMFRSGNVEAARMKFV 361

Query: 492 KISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLA 549
           ++  +G  P      SL + Y +AG  K+AL   G  + K+  + P    +  +++G   
Sbjct: 362 EMRAMGLLPDLITYNSLINGYCKAGNLKEALWLFG--DLKRAGLAPSVLTYNILLDGYCR 419

Query: 550 GGFLQDAQRVHGLMEAQG 567
            G L++A+R    M  QG
Sbjct: 420 LGDLEEARRFKQEMVEQG 437



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 1/105 (0%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           EE  + N   Y+ LI A  +      A +   +M E G+ P+  T T+L+    K GN +
Sbjct: 610 EEGVRPNEVTYNVLIHALCRMGRTNLAYQHFHEMLERGLSPNKYTYTLLIDGNCKEGNWE 669

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMI 354
            A   +  +  HG  PD   +N++   + + GQ K  +  ++ ++
Sbjct: 670 EAIRLYSEMHQHGIHPDHCTHNALFKGF-DEGQSKHAIQYMENVV 713


>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 136/304 (44%), Gaps = 4/304 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N++ ++ LI   +++   E A  +  KM  +G+VP  VT   L++     G  + A   F
Sbjct: 341 NIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIF 400

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + + SHG  P  + YN +I  +   G  +  M + D M+ +G   +   Y  L+  + + 
Sbjct: 401 KWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQ 460

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G++  A ++  IM+    +P   + T L+  + + G  + A S F  M+  G  P+    
Sbjct: 461 GNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTY 520

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I  Y     +D AL L  ++ + G  P   TY V++    +   I+EAE   GK+ +
Sbjct: 521 TAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVK 580

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFL 553
            G  P      S  D   R G    A +   F E +K    P+   +  +I GL   G  
Sbjct: 581 QGLLPNVITYTSFIDGLCRNGRTGLAFKI--FHEMEKRNYFPNLYTYSSLIYGLCQEGRA 638

Query: 554 QDAQ 557
           +DA+
Sbjct: 639 EDAE 642



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 73/334 (21%), Positives = 144/334 (43%), Gaps = 4/334 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + ++  +  V  Y+  + +     C  +A  +L KM + G VP+I T T L+   S+ G 
Sbjct: 298 MVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGK 357

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            + A   +  + + G  P    YN++I      G+ +   ++   M++ G   S + Y  
Sbjct: 358 FEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNE 417

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           +++ F   GD++ A  I + M      P + +   L+  Y + G+ + A    + M   G
Sbjct: 418 IIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNG 477

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            KPD      +I+ + +   L+ A +L   + + G  P   TYT ++D    L  +++A 
Sbjct: 478 LKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDAL 537

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIIN 545
            L  K+ E G  P  +    +   +++     +A    G  +  K+ + P+   +   I+
Sbjct: 538 ALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCG--KMVKQGLLPNVITYTSFID 595

Query: 546 GLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
           GL   G    A ++   ME + +  +     +LI
Sbjct: 596 GLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLI 629



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/323 (21%), Positives = 138/323 (42%), Gaps = 6/323 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++ +I+   K+  +++A+ I+  +      P+  T T L+  + +  NLD A   F+ + 
Sbjct: 205 FNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMV 264

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P+   Y+++I    + G+ +  M +++ M+  GIE +   Y   L S    G   
Sbjct: 265 KDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSS 324

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++   M+     P +++ T L+    + G  + A   +  M+  G  P      ++I
Sbjct: 325 EAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALI 384

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
                +   + A  +   +   G  P   TY  ++     +  I +A  +  K+ + G +
Sbjct: 385 NQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSS 444

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQ 557
           P      +L   Y + G    A++ L  +  K   + PD   +  +I+G   GG L+ A 
Sbjct: 445 PNVITYNTLIYGYCKQGNLNNAMRLLEIM--KGNGLKPDAWTYTELISGFSRGGKLEHAT 502

Query: 558 RV-HGLMEAQGFAASERLKVALI 579
            + +G+ME  G + +     A+I
Sbjct: 503 SLFYGMME-HGISPNHVTYTAII 524



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/264 (21%), Positives = 107/264 (40%), Gaps = 7/264 (2%)

Query: 234 EQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIV 293
           E  T L++      + E     N   Y+ +ID +     ++DA  +  KM E+G +P   
Sbjct: 499 EHATSLFYG-----MMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQ 553

Query: 294 TSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMM 353
           T  V++  +SK  ++  A+     +   G  P+   Y S I      G+  L   +   M
Sbjct: 554 TYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEM 613

Query: 354 ITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF--QPTLESCTLLVEAYGQAG 411
                  +   Y +L+    Q G    A     + R+  +  +P +++ T LV+     G
Sbjct: 614 EKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEG 673

Query: 412 DPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYT 471
              +A      M + G +P +    +++    K   ++ ALN+   ++  GF+   + Y 
Sbjct: 674 RCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYK 733

Query: 472 VLVDWLGRLQLINEAEQLLGKISE 495
            L+  L +   I EA+ +   + E
Sbjct: 734 ALICALCKENFIEEAQCIFQTMLE 757



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 90/196 (45%), Gaps = 18/196 (9%)

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
           +P+L +   ++    + G   +A+    ++ R    P+     S+I  + + + LD A  
Sbjct: 199 RPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFA 258

Query: 454 LLLELEKDGFEPGPATYTVLVDWL---GRLQLINEAEQLLGKISELGEAPPFKIQ----V 506
           +   + KDG +P   TY+ L++ L   GRL+   EA  +L ++ + G  P         V
Sbjct: 259 MFDRMVKDGCDPNSVTYSTLINGLCSEGRLE---EAMDMLEEMVQKGIEPTVYTYTIPLV 315

Query: 507 SLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLME 564
           SLCD    AG   +A++ LG  + KK    P+   F  +I+GL   G  + A  ++  M 
Sbjct: 316 SLCD----AGCSSEAVELLG--KMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKML 369

Query: 565 AQGFAASERLKVALIS 580
           A G   +     ALI+
Sbjct: 370 ADGLVPTTVTYNALIN 385



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 98/248 (39%), Gaps = 11/248 (4%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA- 314
           NV  Y+  ID   +      A +I  +M +    P++ T + L++   + G   RA++A 
Sbjct: 586 NVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEG---RAEDAE 642

Query: 315 ----FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
                  L  +G +P+   Y +++      G+      LV  M   G++ SEEIY ALL 
Sbjct: 643 MYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLI 702

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
              +   V  A  I   M    FQ  L     L+ A  +    ++A+  F  M+      
Sbjct: 703 GECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNS 762

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL---INEAE 487
           D+     ++    K+   D  L LL  +E         TY +L   L  L     I +  
Sbjct: 763 DEVVWTVLLDGLLKEGETDLCLKLLHVMESRNCTLNFQTYVMLARELSALDCAIKIPQIS 822

Query: 488 QLLGKISE 495
           Q LG + +
Sbjct: 823 QQLGIVKD 830


>gi|224083253|ref|XP_002306972.1| predicted protein [Populus trichocarpa]
 gi|222856421|gb|EEE93968.1| predicted protein [Populus trichocarpa]
          Length = 709

 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 132/278 (47%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + +   +   R Y+ L+  + K   L+DAE ++ +M  +G+ P+  T + L+  Y  AG 
Sbjct: 331 MRDNGLKPRTRAYNALLRGYVKAGLLKDAEFVVSEMERSGVSPNEQTYSFLIDAYGNAGR 390

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            + A+   + + +   QP+  V++ ++ +Y + G+ +    ++  M  SG+      Y  
Sbjct: 391 WESARIVLKEMEASNVQPNAYVFSRILSSYRDKGEWQKSFQVLREMENSGVRPDRVFYNV 450

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++ +F +   +  A    + M  E  +P   +   L++ + +AG  D+A   F+ M+  G
Sbjct: 451 MIDTFGKFNCLDHAMATFDRMLSEGIEPDTVTWNTLIDCHCRAGKHDRAEELFEEMMEGG 510

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
           + P +     MI ++G +   D   NLL  +   G  P   TYT L+D  G+    N+A 
Sbjct: 511 YSPCNTTFNIMINSFGDQERWDDVKNLLAHMRSQGLVPNSVTYTTLIDIYGKSGRFNDAI 570

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
           + L  +   G  P   +  +L + YA+ G+ ++A+ A 
Sbjct: 571 ECLDDMKAAGLKPSSTMYNALINAYAQRGLSEQAVSAF 608



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/303 (22%), Positives = 137/303 (45%), Gaps = 2/303 (0%)

Query: 271 NC--LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKK 328
           NC    +AE I ++M +NG+ P       L+  Y KAG L  A+     +   G  P+++
Sbjct: 317 NCGRTVEAEAIFEEMRDNGLKPRTRAYNALLRGYVKAGLLKDAEFVVSEMERSGVSPNEQ 376

Query: 329 VYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIM 388
            Y+ +I AY NAG+ +    ++  M  S ++ +  ++  +L S+   G+ + + Q+   M
Sbjct: 377 TYSFLIDAYGNAGRWESARIVLKEMEASNVQPNAYVFSRILSSYRDKGEWQKSFQVLREM 436

Query: 389 RIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLL 448
                +P      ++++ +G+    D A + FD M+  G +PD     ++I  + +    
Sbjct: 437 ENSGVRPDRVFYNVMIDTFGKFNCLDHAMATFDRMLSEGIEPDTVTWNTLIDCHCRAGKH 496

Query: 449 DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSL 508
           D+A  L  E+ + G+ P   T+ ++++  G  +  ++ + LL  +   G  P      +L
Sbjct: 497 DRAEELFEEMMEGGYSPCNTTFNIMINSFGDQERWDDVKNLLAHMRSQGLVPNSVTYTTL 556

Query: 509 CDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
            D+Y ++G    A++ L  ++A   +     +  +IN     G  + A      M   G 
Sbjct: 557 IDIYGKSGRFNDAIECLDDMKAAGLKPSSTMYNALINAYAQRGLSEQAVSAFRAMRVDGL 616

Query: 569 AAS 571
             S
Sbjct: 617 KPS 619



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 72/336 (21%), Positives = 151/336 (44%), Gaps = 6/336 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDA--ERILKKMNENGIVPDIVTSTVLVHMYSKA 305
           + ++ + ++  +YS +I +  ++N ++ A  +++ +++  + +  D+  S  ++  ++KA
Sbjct: 224 MRQDGYPSDFVNYSLIIRSLMRKNRVDSAILQKLYREIECDKLELDVQLSNDIIVGFAKA 283

Query: 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
           G+L +A E    ++  G         ++I A  N G+     ++ + M  +G++     Y
Sbjct: 284 GDLSKALEFLGVVQGSGLSVKTATLVAVIWALGNCGRTVEAEAIFEEMRDNGLKPRTRAY 343

Query: 366 LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
            ALLR + + G ++ A  + + M      P  ++ + L++AYG AG  + AR     M  
Sbjct: 344 NALLRGYVKAGLLKDAEFVVSEMERSGVSPNEQTYSFLIDAYGNAGRWESARIVLKEMEA 403

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
              +P+    + ++++Y  K    K+  +L E+E  G  P    Y V++D  G+   ++ 
Sbjct: 404 SNVQPNAYVFSRILSSYRDKGEWQKSFQVLREMENSGVRPDRVFYNVMIDTFGKFNCLDH 463

Query: 486 AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERI 543
           A     ++   G  P      +L D + RAG   +A +   F E  +    P +  F  +
Sbjct: 464 AMATFDRMLSEGIEPDTVTWNTLIDCHCRAGKHDRAEEL--FEEMMEGGYSPCNTTFNIM 521

Query: 544 INGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
           IN         D + +   M +QG   +      LI
Sbjct: 522 INSFGDQERWDDVKNLLAHMRSQGLVPNSVTYTTLI 557



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 102/241 (42%), Gaps = 35/241 (14%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE--- 316
           Y+ +ID   K NCL+ A     +M   GI PD VT   L+  + +AG  DRA+E FE   
Sbjct: 448 YNVMIDTFGKFNCLDHAMATFDRMLSEGIEPDTVTWNTLIDCHCRAGKHDRAEELFEEMM 507

Query: 317 --------------------------------SLRSHGFQPDKKVYNSMIMAYVNAGQPK 344
                                            +RS G  P+   Y ++I  Y  +G+  
Sbjct: 508 EGGYSPCNTTFNIMINSFGDQERWDDVKNLLAHMRSQGLVPNSVTYTTLIDIYGKSGRFN 567

Query: 345 LGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
             +  +D M  +G++ S  +Y AL+ ++AQ G    A      MR++  +P+L +   L+
Sbjct: 568 DAIECLDDMKAAGLKPSSTMYNALINAYAQRGLSEQAVSAFRAMRVDGLKPSLLALNSLI 627

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
            A+G+     +A +   YM     KPD     +++ A  +    DK  ++  E+   G  
Sbjct: 628 NAFGEDRRDAEAFTVLQYMKENDLKPDVVTYTTLMKALIRVEKFDKVPSVYEEMILSGCT 687

Query: 465 P 465
           P
Sbjct: 688 P 688



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 59/270 (21%), Positives = 111/270 (41%), Gaps = 41/270 (15%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA--KEAFES 317
           Y+ LI A A+ N LE A  ++ +M ++G   D V  ++++    +   +D A  ++ +  
Sbjct: 201 YNALISACARNNDLEKALNLITRMRQDGYPSDFVNYSLIIRSLMRKNRVDSAILQKLYRE 260

Query: 318 LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
           +     + D ++ N +I+ +  AG                          L ++    G 
Sbjct: 261 IECDKLELDVQLSNDIIVGFAKAGD-------------------------LSKALEFLGV 295

Query: 378 VRGAGQITNIMRIEEFQPTLESCTLL--VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           V+G+G             ++++ TL+  + A G  G   +A + F+ M   G KP  R  
Sbjct: 296 VQGSGL------------SVKTATLVAVIWALGNCGRTVEAEAIFEEMRDNGLKPRTRAY 343

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            +++  Y K  LL  A  ++ E+E+ G  P   TY+ L+D  G       A  +L ++  
Sbjct: 344 NALLRGYVKAGLLKDAEFVVSEMERSGVSPNEQTYSFLIDAYGNAGRWESARIVLKEMEA 403

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
               P   +   +   Y   G  +K+ Q L
Sbjct: 404 SNVQPNAYVFSRILSSYRDKGEWQKSFQVL 433



 Score = 43.1 bits (100), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 81/184 (44%), Gaps = 41/184 (22%)

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
           ++I+A  + N L+KALNL+  + +DG+      Y++++  L R   ++ A  +L K+   
Sbjct: 203 ALISACARNNDLEKALNLITRMRQDGYPSDFVNYSLIIRSLMRKNRVDSA--ILQKLYRE 260

Query: 497 GEAPPFKIQVSLCD----MYARAGIEKKALQALGFL------------------------ 528
            E    ++ V L +     +A+AG   KAL+ LG +                        
Sbjct: 261 IECDKLELDVQLSNDIIVGFAKAGDLSKALEFLGVVQGSGLSVKTATLVAVIWALGNCGR 320

Query: 529 ----EAKKEQMGPDDFE---RIINGLLAG----GFLQDAQRVHGLMEAQGFAASERLKVA 577
               EA  E+M  +  +   R  N LL G    G L+DA+ V   ME  G + +E+    
Sbjct: 321 TVEAEAIFEEMRDNGLKPRTRAYNALLRGYVKAGLLKDAEFVVSEMERSGVSPNEQTYSF 380

Query: 578 LISS 581
           LI +
Sbjct: 381 LIDA 384



 Score = 39.7 bits (91), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 35/68 (51%)

Query: 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320
           + LI+A  ++    +A  +L+ M EN + PD+VT T L+    +    D+    +E +  
Sbjct: 624 NSLINAFGEDRRDAEAFTVLQYMKENDLKPDVVTYTTLMKALIRVEKFDKVPSVYEEMIL 683

Query: 321 HGFQPDKK 328
            G  PD+K
Sbjct: 684 SGCTPDRK 691


>gi|222636666|gb|EEE66798.1| hypothetical protein OsJ_23544 [Oryza sativa Japonica Group]
          Length = 665

 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 126/268 (47%), Gaps = 37/268 (13%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTV---------------------- 297
           Y+ +I+A       + A  + KKM ENG+ PD+VT  +                      
Sbjct: 84  YNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQYSKAISYFEIMK 143

Query: 298 -------------LVHMYSKAGNLDRAKEAFESLRSHGFQ--PDKKVYNSMIMAYVNAGQ 342
                        ++H   K G    A E F S+R    +  PD   Y S++ +Y   GQ
Sbjct: 144 GANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYCIYGQ 203

Query: 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402
            +   ++ D+M+  G++ +   Y +LL ++A  G  R A  I N+++    +P + S T 
Sbjct: 204 VENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTS 263

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           L+ AYG++  P++AR  F+ M +   KP+     ++I AYG   +L +A+ LL E+EKDG
Sbjct: 264 LLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEKDG 323

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLL 490
            +P   + + L+   GR + I   E +L
Sbjct: 324 IQPDVVSISTLLAACGRCRQITRIETIL 351



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 150/346 (43%), Gaps = 46/346 (13%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  +I  +A+ N ++ A  +  +M E    PD      L+H +S+AG    A    E + 
Sbjct: 14  YGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDML 73

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE---RSEEIYLALLRSFAQCG 376
                P +  YN++I A   AG  K  + L   M  +G+     +  I L+ L++ AQ  
Sbjct: 74  RAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQYS 133

Query: 377 D-------VRGAGQITNIMR-----------------IEEFQ----------PTLESCTL 402
                   ++GA   ++                    IE F           P + + T 
Sbjct: 134 KAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTS 193

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           ++ +Y   G  +  ++ FD M+  G KP+     S++ AY  + +  +AL +   ++K+G
Sbjct: 194 IMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNG 253

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQV-SLCDMYARAGIEKKA 521
             P   +YT L++  GR     +A ++  K+ +     P K+   +L D Y  AG+ K  
Sbjct: 254 LRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKK-NSCKPNKVSYNALIDAYGSAGMLK-- 310

Query: 522 LQALGFL-EAKKEQMGPDDFERIINGLLAG-GFLQDAQRVHGLMEA 565
            +A+G L E +K+ + PD     I+ LLA  G  +   R+  ++EA
Sbjct: 311 -EAVGLLHEMEKDGIQPDVVS--ISTLLAACGRCRQITRIETILEA 353



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 74/333 (22%), Positives = 141/333 (42%), Gaps = 47/333 (14%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++  E  + N+  Y+ L+ A+A      +A  I   + +NG+ PDIV+ T L++ Y ++ 
Sbjct: 213 LMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTSLLNAYGRSA 272

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE------- 359
             ++A+E F  ++ +  +P+K  YN++I AY +AG  K  + L+  M   GI+       
Sbjct: 273 QPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEKDGIQPDVVSIS 332

Query: 360 -------------RSEEI---------------YLALLRSFAQCGDVRGAGQITNIMRIE 391
                        R E I               Y + ++S+   GD   A ++   MR  
Sbjct: 333 TLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEKALELYTSMRES 392

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
             +P   +  +L+    + G   ++   F+ M+      D + +++      K+  L +A
Sbjct: 393 NVKPDAVTYNILISGSSKLGKYTESLRFFEDMV------DSKVSST------KEGKLSEA 440

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
            +    ++K G  P   TYT L+           A  L  ++   G  P   I  SL + 
Sbjct: 441 ESTFSSMKKSGCFPDVLTYTTLIQAYNAGGGWKRAWDLFKEMEVNGIPPDAIICSSLMEA 500

Query: 512 YARAGIEKKALQALGFLEAKKEQMGPDDFERII 544
           + + G  ++ LQ + F++ K   +    +  II
Sbjct: 501 FNKGGEPERVLQLMEFMKKKSIPLNQKSYFEII 533



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 130/288 (45%), Gaps = 31/288 (10%)

Query: 228 LLDRLREQNTQLYFKVAELVLSEES----FQTNVRDYSKLIDA---HAKENCLEDAERIL 280
           L   +RE N +       +++S  S    +  ++R +  ++D+     KE  L +AE   
Sbjct: 385 LYTSMRESNVKPDAVTYNILISGSSKLGKYTESLRFFEDMVDSKVSSTKEGKLSEAESTF 444

Query: 281 KKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNA 340
             M ++G  PD++T T L+  Y+  G   RA + F+ +  +G  PD  + +S++ A+   
Sbjct: 445 SSMKKSGCFPDVLTYTTLIQAYNAGGGWKRAWDLFKEMEVNGIPPDAIICSSLMEAFNKG 504

Query: 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
           G+P+  + L++ M    I  +++ Y  ++ S     D + A ++     IE    +L S 
Sbjct: 505 GEPERVLQLMEFMKKKSIPLNQKSYFEIIASCTMIRDWKTASEM-----IEYLDSSLSSI 559

Query: 401 TL-----LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGK--KNLL----- 448
           ++     ++   G+ G  +        M++L +K    C+   ++ Y    +NLL     
Sbjct: 560 SVGTLNHVLNFLGKCGKTEN-------MMKLFYKMVTSCSTVGLSTYAVVLRNLLVVGKW 612

Query: 449 DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
            K + +L  +E  G  P    +  ++ ++ R   ++ A  +  KIS L
Sbjct: 613 RKYIEVLQWMEDSGVHPTLYMFQNVLPYIWRENGMDFAATMQEKISSL 660


>gi|414888270|tpg|DAA64284.1| TPA: hypothetical protein ZEAMMB73_921256 [Zea mays]
          Length = 890

 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 139/323 (43%), Gaps = 2/323 (0%)

Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311
           S + ++  Y+ L+ A A  +  + +E +L  M E G+ PD V+   +V  ++ AGNL RA
Sbjct: 268 SVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVSPDTVSYRHIVDAFASAGNLSRA 327

Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
            E F  + + G   D   Y  ++ A+   G     ++++  M   G   +   Y  LL  
Sbjct: 328 AELFSEMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQADGCAPTAATYRVLLDL 387

Query: 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
           + + G   G  Q+   MR     P   +  +L   +G  G   +    F  M++ G +PD
Sbjct: 388 YGRQGRFDGVRQLFREMRT-AVPPDTATYNVLFRVFGDGGFFKEVVELFHDMLKTGVQPD 446

Query: 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
                +++AA G   L   A  +L  + ++G  P    YT LV+ LG   +  EA     
Sbjct: 447 MVTCENVMAACGHGGLHGDAREVLEYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFN 506

Query: 492 KISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE-QMGPDDFERIINGLLAG 550
            ++E+G  P  +   +L   YAR G+ ++A      +      Q   D F+ +I     G
Sbjct: 507 MMTEIGSLPTLETYNALAFAYARGGLFQEAEAIFSRMSNNAGIQKSKDSFDALIEAYCQG 566

Query: 551 GFLQDAQRVHGLMEAQGFAASER 573
             L DA + +  M    F   ER
Sbjct: 567 SRLDDAVKAYMEMRKSRFNPDER 589



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 84/188 (44%), Gaps = 1/188 (0%)

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           DA  +L+ M   G+VP     T LV     A   + A  AF  +   G  P  + YN++ 
Sbjct: 465 DAREVLEYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTLETYNALA 524

Query: 335 MAYVNAGQPKLGMSLVDMMIT-SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
            AY   G  +   ++   M   +GI++S++ + AL+ ++ Q   +  A +    MR   F
Sbjct: 525 FAYARGGLFQEAEAIFSRMSNNAGIQKSKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRF 584

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
            P   S   ++ AY  AG  D+++  F+ +      P       M++ Y + +    A +
Sbjct: 585 NPDERSLEGVLNAYCIAGVIDESKEQFEELQSSVTMPSVIAYCMMLSLYARNDRWTDAYD 644

Query: 454 LLLELEKD 461
           LL E++ +
Sbjct: 645 LLEEMKTN 652



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 92/232 (39%), Gaps = 1/232 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L          ++   +   M + G+ PD+VT   ++      G    A+E  E + 
Sbjct: 415 YNVLFRVFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVLEYMT 474

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P    Y  ++ A  +A   +      +MM   G   + E Y AL  ++A+ G  +
Sbjct: 475 REGMVPTADAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTLETYNALAFAYARGGLFQ 534

Query: 380 GAGQITNIMRIEE-FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
            A  I + M      Q + +S   L+EAY Q    D A   +  M +    PD+R    +
Sbjct: 535 EAEAIFSRMSNNAGIQKSKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRFNPDERSLEGV 594

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           + AY    ++D++     EL+     P    Y +++    R     +A  LL
Sbjct: 595 LNAYCIAGVIDESKEQFEELQSSVTMPSVIAYCMMLSLYARNDRWTDAYDLL 646



 Score = 42.7 bits (99), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 64/134 (47%), Gaps = 4/134 (2%)

Query: 241 FKVAELVLSEESFQTNVR----DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTST 296
           F+ AE + S  S    ++     +  LI+A+ + + L+DA +   +M ++   PD  +  
Sbjct: 533 FQEAEAIFSRMSNNAGIQKSKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRFNPDERSLE 592

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
            +++ Y  AG +D +KE FE L+S    P    Y  M+  Y    +      L++ M T+
Sbjct: 593 GVLNAYCIAGVIDESKEQFEELQSSVTMPSVIAYCMMLSLYARNDRWTDAYDLLEEMKTN 652

Query: 357 GIERSEEIYLALLR 370
               + ++  +L++
Sbjct: 653 RASSTHQVIASLIK 666


>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680 [Vitis vinifera]
 gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
          Length = 592

 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 161/374 (43%), Gaps = 11/374 (2%)

Query: 129 AAECAEVEEKPKVITLPKRHGKIKYKIYGLDLSDPKWTEVAEKIHERGEMILPEEPKPIT 188
           A +C  +  K  +       G +  ++  L+L+ P W    E        IL     P  
Sbjct: 174 AIQCFRLVRKHNLQIPFHSCGYLFDRLMKLNLTSPAWAFYEE--------ILDCGYPPDV 225

Query: 189 GKCKLITDKILSLEKEEDPSPLLAEW-KELLQPSRIDWINLLD-RLREQNTQLYFKVAEL 246
            K  ++  ++    K  +   L  E  K  L+P+ + +  L++   +  N    F++   
Sbjct: 226 CKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRF 285

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++    F  +V  YS LI+   KE  L+DA ++  +M + G+VP+ VT T L++ +   G
Sbjct: 286 MMENRVFP-DVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTG 344

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
             D   E ++ +   G +PD   YN++I      G  +    LV  M   G++  +  Y 
Sbjct: 345 RADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYT 404

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+    + GD+  A +I   M  E  +    + T L+  + + G   +A      M+  
Sbjct: 405 MLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEA 464

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G KPDD     +I  + KK  +     LL E++ DG  PG  TY VL++ L +   +  A
Sbjct: 465 GIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNA 524

Query: 487 EQLLGKISELGEAP 500
             LL  +  LG  P
Sbjct: 525 NMLLDAMLNLGVVP 538



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 85/177 (48%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ LI+   K   L +A++++ +M + G+ PD  T T+L+    K G+L+ A E  
Sbjct: 364 DVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIR 423

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + +   G + D   + ++I  +   GQ       +  M+ +GI+  +  Y  ++  F + 
Sbjct: 424 KEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKK 483

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
           GDV+   ++   M+ +   P + +  +L+    + G    A    D M+ LG  PDD
Sbjct: 484 GDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDD 540



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 69/162 (42%), Gaps = 4/162 (2%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LID   KE  LE A  I K+M + GI  D V  T L+  + + G +  A+     + 
Sbjct: 403 YTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREML 462

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +PD   Y  +I  +   G  K G  L+  M   G       Y  LL    + G ++
Sbjct: 463 EAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMK 522

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421
            A  + + M      P   +  +L+E + + G+    R +FD
Sbjct: 523 NANMLLDAMLNLGVVPDDITYNILLEGHCKHGN----REDFD 560


>gi|168004269|ref|XP_001754834.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162693938|gb|EDQ80288.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 504

 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 156/335 (46%), Gaps = 15/335 (4%)

Query: 199 LSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLREQNTQLYF--KVAELVLSEESFQ- 254
           + LEK E    L  E KE    P  ++W+ +   +   NT L    K   L  +E++F+ 
Sbjct: 132 VQLEKAEK---LFHEMKESNYSPGTVEWM-IFSGIATYNTYLEVLGKSGRLSQAEDTFRD 187

Query: 255 -------TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
                    V  ++ +I+ + K    + A+ + + M +    P++ T T L++ +++ GN
Sbjct: 188 MQKQGILPAVNTFTIMINIYGKAYYSDKADDLFRSMRKALCPPNLYTYTALMNAHAREGN 247

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
             RA+E F  L+S GF PD   YN+++ AY     P     +   M+ +G+   +  Y  
Sbjct: 248 CVRAEEIFAELQSVGFIPDVYTYNALLEAYSRGEHPTGAKEVFQAMVEAGVRPDQVSYNI 307

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+ +F + G    A  + + M+   F+PT++S  LL+ +Y +AG   +A      +   G
Sbjct: 308 LIDAFGRAGLTADAQAVYDSMKEAGFKPTMKSHMLLLSSYAKAGKVTEAERLVREIENSG 367

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            KPD     S+++AYG    +D+  +LL  +     +P  +T   L++   +   I +AE
Sbjct: 368 VKPDTFMFNSLLSAYGNSGRIDEMESLLESMVSSVAKPDISTLNTLINAYAQGGYIEKAE 427

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522
           ++   +   G  P      SL   YA+  + +K +
Sbjct: 428 EVFNSLESKGLTPDVMSWTSLMGAYAQRKLFRKCV 462



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 128/258 (49%), Gaps = 5/258 (1%)

Query: 256 NVRDYSKLIDAHAKE-NCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA 314
           N+  Y+ L++AHA+E NC+  AE I  ++   G +PD+ T   L+  YS+  +   AKE 
Sbjct: 231 NLYTYTALMNAHAREGNCVR-AEEIFAELQSVGFIPDVYTYNALLEAYSRGEHPTGAKEV 289

Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
           F+++   G +PD+  YN +I A+  AG      ++ D M  +G + + + ++ LL S+A+
Sbjct: 290 FQAMVEAGVRPDQVSYNILIDAFGRAGLTADAQAVYDSMKEAGFKPTMKSHMLLLSSYAK 349

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
            G V  A ++   +     +P       L+ AYG +G  D+  S  + M+    KPD   
Sbjct: 350 AGKVTEAERLVREIENSGVKPDTFMFNSLLSAYGNSGRIDEMESLLESMVSSVAKPDIST 409

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
             ++I AY +   ++KA  +   LE  G  P   ++T L+    + +L  +   +  K+ 
Sbjct: 410 LNTLINAYAQGGYIEKAEEVFNSLESKGLTPDVMSWTSLMGAYAQRKLFRKCVSIFQKMV 469

Query: 495 ELGEAP---PFKIQVSLC 509
           + G  P     K+ +S C
Sbjct: 470 KAGCIPDRATAKVFLSSC 487



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 132/284 (46%), Gaps = 2/284 (0%)

Query: 255 TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA 314
           + +  Y+  ++   K   L  AE   + M + GI+P + T T+++++Y KA   D+A + 
Sbjct: 160 SGIATYNTYLEVLGKSGRLSQAEDTFRDMQKQGILPAVNTFTIMINIYGKAYYSDKADDL 219

Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
           F S+R     P+   Y +++ A+   G       +   + + G       Y ALL ++++
Sbjct: 220 FRSMRKALCPPNLYTYTALMNAHAREGNCVRAEEIFAELQSVGFIPDVYTYNALLEAYSR 279

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
                GA ++   M     +P   S  +L++A+G+AG    A++ +D M   G KP  + 
Sbjct: 280 GEHPTGAKEVFQAMVEAGVRPDQVSYNILIDAFGRAGLTADAQAVYDSMKEAGFKPTMKS 339

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
              ++++Y K   + +A  L+ E+E  G +P    +  L+   G    I+E E LL  + 
Sbjct: 340 HMLLLSSYAKAGKVTEAERLVREIENSGVKPDTFMFNSLLSAYGNSGRIDEMESLLESMV 399

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
                P      +L + YA+ G  +KA +    LE+K   + PD
Sbjct: 400 SSVAKPDISTLNTLINAYAQGGYIEKAEEVFNSLESKG--LTPD 441



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 110/228 (48%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L    F  +V  Y+ L++A+++      A+ + + M E G+ PD V+  +L+  + +AG 
Sbjct: 258 LQSVGFIPDVYTYNALLEAYSRGEHPTGAKEVFQAMVEAGVRPDQVSYNILIDAFGRAGL 317

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
              A+  ++S++  GF+P  K +  ++ +Y  AG+      LV  +  SG++    ++ +
Sbjct: 318 TADAQAVYDSMKEAGFKPTMKSHMLLLSSYAKAGKVTEAERLVREIENSGVKPDTFMFNS 377

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           LL ++   G +     +   M     +P + +   L+ AY Q G  ++A   F+ +   G
Sbjct: 378 LLSAYGNSGRIDEMESLLESMVSSVAKPDISTLNTLINAYAQGGYIEKAEEVFNSLESKG 437

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
             PD     S++ AY ++ L  K +++  ++ K G  P  AT  V + 
Sbjct: 438 LTPDVMSWTSLMGAYAQRKLFRKCVSIFQKMVKAGCIPDRATAKVFLS 485



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 86/389 (22%), Positives = 157/389 (40%), Gaps = 50/389 (12%)

Query: 227 NLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKE---------------- 270
           N+ +  R +N +    + E +L    F+ +V  ++ LIDA+ K                 
Sbjct: 53  NVAELRRLRNWRSVILILEWILQGTMFKPDVGCFNMLIDAYGKSKQWREAEKTFHLMKDF 112

Query: 271 NC-------------------LEDAERILKKMNENGIVP---------DIVTSTVLVHMY 302
            C                   LE AE++  +M E+   P          I T    + + 
Sbjct: 113 QCLPTETSFNVLLAAYSRGVQLEKAEKLFHEMKESNYSPGTVEWMIFSGIATYNTYLEVL 172

Query: 303 SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE 362
            K+G L +A++ F  ++  G  P    +  MI  Y  A        L   M  +    + 
Sbjct: 173 GKSGRLSQAEDTFRDMQKQGILPAVNTFTIMINIYGKAYYSDKADDLFRSMRKALCPPNL 232

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
             Y AL+ + A+ G+   A +I   ++   F P + +   L+EAY +   P  A+  F  
Sbjct: 233 YTYTALMNAHAREGNCVRAEEIFAELQSVGFIPDVYTYNALLEAYSRGEHPTGAKEVFQA 292

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
           M+  G +PD      +I A+G+  L   A  +   +++ GF+P   ++ +L+    +   
Sbjct: 293 MVEAGVRPDQVSYNILIDAFGRAGLTADAQAVYDSMKEAGFKPTMKSHMLLLSSYAKAGK 352

Query: 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--- 539
           + EAE+L+ +I   G  P   +  SL   Y  +G   +  +    LE+    +   D   
Sbjct: 353 VTEAERLVREIENSGVKPDTFMFNSLLSAYGNSG---RIDEMESLLESMVSSVAKPDIST 409

Query: 540 FERIINGLLAGGFLQDAQRVHGLMEAQGF 568
              +IN    GG+++ A+ V   +E++G 
Sbjct: 410 LNTLINAYAQGGYIEKAEEVFNSLESKGL 438



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 117/276 (42%), Gaps = 15/276 (5%)

Query: 318 LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
           L+   F+PD   +N +I AY  + Q +       +M       +E  +  LL ++++   
Sbjct: 74  LQGTMFKPDVGCFNMLIDAYGKSKQWREAEKTFHLMKDFQCLPTETSFNVLLAAYSRGVQ 133

Query: 378 VRGAGQITNIMRIEEFQP-TLE--------SCTLLVEAYGQAGDPDQARSNFDYMIRLGH 428
           +  A ++ + M+   + P T+E        +    +E  G++G   QA   F  M + G 
Sbjct: 134 LEKAEKLFHEMKESNYSPGTVEWMIFSGIATYNTYLEVLGKSGRLSQAEDTFRDMQKQGI 193

Query: 429 KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQ 488
            P       MI  YGK    DKA +L   + K    P   TYT L++   R      AE+
Sbjct: 194 LPAVNTFTIMINIYGKAYYSDKADDLFRSMRKALCPPNLYTYTALMNAHAREGNCVRAEE 253

Query: 489 LLGKISELGEAPPFKIQVSLCDMYARA---GIEKKALQALGFLEAKKEQMGPDDFERIIN 545
           +  ++  +G  P      +L + Y+R       K+  QA+     + +Q+    +  +I+
Sbjct: 254 IFAELQSVGFIPDVYTYNALLEAYSRGEHPTGAKEVFQAMVEAGVRPDQV---SYNILID 310

Query: 546 GLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
                G   DAQ V+  M+  GF  + +  + L+SS
Sbjct: 311 AFGRAGLTADAQAVYDSMKEAGFKPTMKSHMLLLSS 346


>gi|218199303|gb|EEC81730.1| hypothetical protein OsI_25362 [Oryza sativa Indica Group]
          Length = 583

 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 126/268 (47%), Gaps = 37/268 (13%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTV---------------------- 297
           Y+ +I+A       + A  + KKM ENG+ PD+VT  +                      
Sbjct: 84  YNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQYSKAISYFEIMK 143

Query: 298 -------------LVHMYSKAGNLDRAKEAFESLRSHGFQ--PDKKVYNSMIMAYVNAGQ 342
                        ++H   K G    A E F S+R    +  PD   Y S++ +Y   GQ
Sbjct: 144 GANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYCIYGQ 203

Query: 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402
            +   ++ D+M+  G++ +   Y +LL ++A  G  R A  I N+++    +P + S T 
Sbjct: 204 VENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTS 263

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           L+ AYG++  P++AR  F+ M +   KP+     ++I AYG   +L +A+ LL E+EKDG
Sbjct: 264 LLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEKDG 323

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLL 490
            +P   + + L+   GR + I   E +L
Sbjct: 324 IQPDVVSISTLLAACGRCRQITRIETIL 351



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 150/346 (43%), Gaps = 46/346 (13%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  +I  +A+ N ++ A  +  +M E    PD      L+H +S+AG    A    E + 
Sbjct: 14  YGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDML 73

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE---RSEEIYLALLRSFAQCG 376
                P +  YN++I A   AG  K  + L   M  +G+     +  I L+ L++ AQ  
Sbjct: 74  RAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQYS 133

Query: 377 D-------VRGAGQITNIMR-----------------IEEFQ----------PTLESCTL 402
                   ++GA   ++                    IE F           P + + T 
Sbjct: 134 KAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTS 193

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           ++ +Y   G  +  ++ FD M+  G KP+     S++ AY  + +  +AL +   ++K+G
Sbjct: 194 IMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNG 253

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQV-SLCDMYARAGIEKKA 521
             P   +YT L++  GR     +A ++  K+ +     P K+   +L D Y  AG+ K  
Sbjct: 254 LRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKK-NSCKPNKVSYNALIDAYGSAGMLK-- 310

Query: 522 LQALGFL-EAKKEQMGPDDFERIINGLLAG-GFLQDAQRVHGLMEA 565
            +A+G L E +K+ + PD     I+ LLA  G  +   R+  ++EA
Sbjct: 311 -EAVGLLHEMEKDGIQPDVVS--ISTLLAACGRCRQITRIETILEA 353



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 105/228 (46%), Gaps = 35/228 (15%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++  E  + N+  Y+ L+ A+A      +A  I   + +NG+ PDIV+ T L++ Y ++ 
Sbjct: 213 LMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTSLLNAYGRSA 272

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
             ++A+E F  ++ +  +P+K  YN++I AY +AG  K  + L+  M   GI+  + + +
Sbjct: 273 QPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEKDGIQ-PDVVSI 331

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           + L   A CG  R   QIT   RIE         T+L  A  +  D +    N       
Sbjct: 332 STL--LAACGRCR---QIT---RIE---------TILEAARSRGIDLNTVAYN------- 367

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
                     S I +Y      +KAL L   + +   +P   TY +L+
Sbjct: 368 ----------SGIKSYLSFGDYEKALELYTSMRESNVKPDAVTYNILI 405



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 64/129 (49%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + + S + N   Y+ LIDA+     L++A  +L +M ++GI PD+V+ + L+    +   
Sbjct: 284 MKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQ 343

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           + R +   E+ RS G   +   YNS I +Y++ G  +  + L   M  S ++     Y  
Sbjct: 344 ITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEKALELYTSMRESNVKPDAVTYNI 403

Query: 368 LLRSFAQCG 376
           L+   ++ G
Sbjct: 404 LISGSSKLG 412



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/178 (20%), Positives = 79/178 (44%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++ +   + ++  Y+ L++A+ +    E A  +  KM +N   P+ V+   L+  Y  AG
Sbjct: 248 LIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAG 307

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            L  A      +   G QPD    ++++ A     Q     ++++   + GI+ +   Y 
Sbjct: 308 MLKEAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYN 367

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
           + ++S+   GD   A ++   MR    +P   +  +L+    + G   ++   F+ M+
Sbjct: 368 SGIKSYLSFGDYEKALELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLRFFEDMV 425


>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 742

 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 155/338 (45%), Gaps = 17/338 (5%)

Query: 242 KVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM 301
           +V  ++ ++  F  NV  Y+ LI    K   +    ++  +M    IVPD VT T ++H 
Sbjct: 343 QVLRVMKNQRIFPDNVV-YTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHG 401

Query: 302 YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS 361
             +AG +  A++ F  + S G +PD+  Y ++I  Y  AG+ K   SL + M+  G+  +
Sbjct: 402 LCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPN 461

Query: 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421
              Y AL+    +CG+V  A ++ + M  +  QP + +   L+    + G+ +QA    +
Sbjct: 462 VVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLME 521

Query: 422 YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ 481
            M   G  PD     +++ AY K   + KA  LL  +   G +P   T+ VL++      
Sbjct: 522 EMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSG 581

Query: 482 LINEAEQLLGKISELGEAPPFKIQVSLCDMYA-----RAGIE-KKALQALGFLEAKKEQM 535
           ++ + E+L+  + + G  P      SL   Y      RA IE  K + A G +       
Sbjct: 582 MLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVV------- 634

Query: 536 GPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAAS 571
            PD   +  +I G      +++A  +H  M  +GF+ +
Sbjct: 635 -PDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLT 671



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 152/354 (42%), Gaps = 35/354 (9%)

Query: 249 SEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNL 308
           SE     N   Y+ ++    +   +++A  +L +M   G VPD+V+ +V+V  Y +   L
Sbjct: 244 SEVGVCWNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVDGYCQVEQL 303

Query: 309 DRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLAL 368
            +  +  E L+  G +P++  YNS+I      G+      ++ +M    I     +Y  L
Sbjct: 304 GKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTL 363

Query: 369 LRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH 428
           +  F + G+V    ++ + M+ ++  P   + T ++    QAG   +AR  F  M+  G 
Sbjct: 364 ISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGL 423

Query: 429 KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQ 488
           KPD+    ++I  Y K   + +A +L  ++ + G  P   TYT LVD L +   ++ A +
Sbjct: 424 KPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANE 483

Query: 489 LLGKISELGEAP----------------------------------PFKIQ-VSLCDMYA 513
           LL ++SE G  P                                  P  I   ++ D Y 
Sbjct: 484 LLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYC 543

Query: 514 RAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
           + G   KA + L  +  K  Q     F  ++NG    G L+D +R+   M  +G
Sbjct: 544 KMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKG 597



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/296 (22%), Positives = 128/296 (43%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           +  A R+ ++ +E G+  + V+  +++H+  + G +  A      +   G  PD   Y+ 
Sbjct: 233 IRTAFRVFREYSEVGVCWNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSV 292

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           ++  Y    Q    + L++ +   G++ ++  Y +++    + G V  A Q+  +M+ + 
Sbjct: 293 IVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQR 352

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P     T L+  +G++G+       FD M R    PD     SMI    +   + +A 
Sbjct: 353 IFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEAR 412

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
            L  E+   G +P   TYT L+D   +   + EA  L  ++ E G  P      +L D  
Sbjct: 413 KLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGL 472

Query: 513 ARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
            + G    A + L  +  K  Q     +  +INGL   G ++ A ++   M+  GF
Sbjct: 473 CKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGF 528



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 111/246 (45%), Gaps = 7/246 (2%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +SE+  Q NV  Y+ LI+   K   +E A +++++M+  G  PD +T T ++  Y K G 
Sbjct: 488 MSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGE 547

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           + +A E    +   G QP    +N ++  +  +G  + G  L+  M+  GI  +   + +
Sbjct: 548 MAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNS 607

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L++ +    ++R   +I   M  +   P   +  +L++ + +A +  +A      M+  G
Sbjct: 608 LMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKG 667

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD-------WLGRL 480
                    S+I  + K+   ++A  L  E+   GF      Y + VD       W   L
Sbjct: 668 FSLTAASYNSLIKGFYKRKKFEEARKLFEEMRTHGFIAEKEIYDIFVDVNYEEGNWENTL 727

Query: 481 QLINEA 486
           +L +EA
Sbjct: 728 ELCDEA 733



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 106/243 (43%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E+    NV  Y+ L+D   K   ++ A  +L +M+E G+ P++ T   L++   K GN
Sbjct: 453 MVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGN 512

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +++A +  E +   GF PD   Y +++ AY   G+      L+ +M+  G++ +   +  
Sbjct: 513 IEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNV 572

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+  F   G +    ++   M  +   P   +   L++ Y    +       +  M   G
Sbjct: 573 LMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQG 632

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD      +I  + K   + +A  L  E+ + GF    A+Y  L+    + +   EA 
Sbjct: 633 VVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEAR 692

Query: 488 QLL 490
           +L 
Sbjct: 693 KLF 695



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/201 (21%), Positives = 83/201 (41%), Gaps = 16/201 (7%)

Query: 220 PSRIDWINLLDRLREQNTQLYFKVAEL--------VLSEESFQTNVRDYSKLIDAHAKEN 271
           P  I +  ++D         Y K+ E+        ++ ++  Q  +  ++ L++      
Sbjct: 530 PDTITYTTIMDA--------YCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSG 581

Query: 272 CLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYN 331
            LED ER++K M + GI+P+  T   L+  Y    N+    E ++ + + G  PD   YN
Sbjct: 582 MLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYN 641

Query: 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391
            +I  +  A   K    L   M+  G   +   Y +L++ F +      A ++   MR  
Sbjct: 642 ILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARKLFEEMRTH 701

Query: 392 EFQPTLESCTLLVEAYGQAGD 412
            F    E   + V+   + G+
Sbjct: 702 GFIAEKEIYDIFVDVNYEEGN 722



 Score = 46.6 bits (109), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 47/219 (21%), Positives = 90/219 (41%), Gaps = 8/219 (3%)

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
           Y  +L    Q G V+ A  +   M      P + S +++V+ Y Q     +     + + 
Sbjct: 255 YNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVDGYCQVEQLGKVLKLMEELQ 314

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
           R G KP+     S+I+   K   + +A  +L  ++     P    YT L+   G+   ++
Sbjct: 315 RKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVS 374

Query: 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARAG--IEKKALQALGFLEAKKEQMGPDD--F 540
              +L  ++      P F    S+     +AG  +E + L    F E   + + PD+  +
Sbjct: 375 VEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKL----FSEMLSKGLKPDEVTY 430

Query: 541 ERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
             +I+G    G +++A  +H  M  +G   +     AL+
Sbjct: 431 TALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALV 469


>gi|297606902|ref|NP_001059180.2| Os07g0213300 [Oryza sativa Japonica Group]
 gi|215767816|dbj|BAH00045.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255677604|dbj|BAF21094.2| Os07g0213300 [Oryza sativa Japonica Group]
          Length = 677

 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 126/268 (47%), Gaps = 37/268 (13%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTV---------------------- 297
           Y+ +I+A       + A  + KKM ENG+ PD+VT  +                      
Sbjct: 84  YNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQYSKAISYFEIMK 143

Query: 298 -------------LVHMYSKAGNLDRAKEAFESLRSHGFQ--PDKKVYNSMIMAYVNAGQ 342
                        ++H   K G    A E F S+R    +  PD   Y S++ +Y   GQ
Sbjct: 144 GANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYCIYGQ 203

Query: 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402
            +   ++ D+M+  G++ +   Y +LL ++A  G  R A  I N+++    +P + S T 
Sbjct: 204 VENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTS 263

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           L+ AYG++  P++AR  F+ M +   KP+     ++I AYG   +L +A+ LL E+EKDG
Sbjct: 264 LLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEKDG 323

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLL 490
            +P   + + L+   GR + I   E +L
Sbjct: 324 IQPDVVSISTLLAACGRCRQITRIETIL 351



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 76/333 (22%), Positives = 142/333 (42%), Gaps = 35/333 (10%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++  E  + N+  Y+ L+ A+A      +A  I   + +NG+ PDIV+ T L++ Y ++ 
Sbjct: 213 LMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTSLLNAYGRSA 272

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE------- 359
             ++A+E F  ++ +  +P+K  YN++I AY +AG  K  + L+  M   GI+       
Sbjct: 273 QPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEKDGIQPDVVSIS 332

Query: 360 ----------------------RSEEI------YLALLRSFAQCGDVRGAGQITNIMRIE 391
                                 RS  I      Y + ++S+   GD   A ++   MR  
Sbjct: 333 TLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEKALELYTSMRES 392

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
             +P   +  +L+    + G   ++   F+ M+           +S+I +Y K+  L +A
Sbjct: 393 NVKPDAVTYNILISGSSKLGKYTESLRFFEDMVDSKVSSTKEVYSSLIYSYIKQGKLSEA 452

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
            +    ++K G  P   TYT L+           A  L  ++   G  P   I  SL + 
Sbjct: 453 ESTFSSMKKSGCFPDVLTYTTLIQAYNAGGGWKRAWDLFKEMEVNGIPPDAIICSSLMEA 512

Query: 512 YARAGIEKKALQALGFLEAKKEQMGPDDFERII 544
           + + G  ++ LQ + F++ K   +    +  II
Sbjct: 513 FNKGGEPERVLQLMEFMKKKSIPLNQKSYFEII 545



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 150/346 (43%), Gaps = 46/346 (13%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  +I  +A+ N ++ A  +  +M E    PD      L+H +S+AG    A    E + 
Sbjct: 14  YGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDML 73

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE---RSEEIYLALLRSFAQCG 376
                P +  YN++I A   AG  K  + L   M  +G+     +  I L+ L++ AQ  
Sbjct: 74  RAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQYS 133

Query: 377 D-------VRGAGQITNIMR-----------------IEEFQ----------PTLESCTL 402
                   ++GA   ++                    IE F           P + + T 
Sbjct: 134 KAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTS 193

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           ++ +Y   G  +  ++ FD M+  G KP+     S++ AY  + +  +AL +   ++K+G
Sbjct: 194 IMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNG 253

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQV-SLCDMYARAGIEKKA 521
             P   +YT L++  GR     +A ++  K+ +     P K+   +L D Y  AG+ K  
Sbjct: 254 LRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKK-NSCKPNKVSYNALIDAYGSAGMLK-- 310

Query: 522 LQALGFL-EAKKEQMGPDDFERIINGLLAG-GFLQDAQRVHGLMEA 565
            +A+G L E +K+ + PD     I+ LLA  G  +   R+  ++EA
Sbjct: 311 -EAVGLLHEMEKDGIQPDVVS--ISTLLAACGRCRQITRIETILEA 353



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 116/249 (46%), Gaps = 24/249 (9%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS LI ++ K+  L +AE     M ++G  PD++T T L+  Y+  G   RA + F+ + 
Sbjct: 436 YSSLIYSYIKQGKLSEAESTFSSMKKSGCFPDVLTYTTLIQAYNAGGGWKRAWDLFKEME 495

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
            +G  PD  + +S++ A+   G+P+  + L++ M    I  +++ Y  ++ S     D +
Sbjct: 496 VNGIPPDAIICSSLMEAFNKGGEPERVLQLMEFMKKKSIPLNQKSYFEIIASCTMIRDWK 555

Query: 380 GAGQITNIMRIEEFQPTLESCTL-----LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
            A ++     IE    +L S ++     ++   G+ G  +        M++L +K    C
Sbjct: 556 TASEM-----IEYLDSSLSSISVGTLNHVLNFLGKCGKTEN-------MMKLFYKMVTSC 603

Query: 435 TASMIAAYGK--KNLL-----DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
           +   ++ Y    +NLL      K + +L  +E  G  P    +  ++ ++ R   ++ A 
Sbjct: 604 STVGLSTYAVVLRNLLVVGKWRKYIEVLQWMEDSGVHPTLYMFQNVLPYIWRENGMDFAA 663

Query: 488 QLLGKISEL 496
            +  KIS L
Sbjct: 664 TMQEKISSL 672



 Score = 40.0 bits (92), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 74/172 (43%), Gaps = 16/172 (9%)

Query: 240 YFKVAELVLSEESFQT--------NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPD 291
           Y K  +L  +E +F +        +V  Y+ LI A+      + A  + K+M  NGI PD
Sbjct: 443 YIKQGKLSEAESTFSSMKKSGCFPDVLTYTTLIQAYNAGGGWKRAWDLFKEMEVNGIPPD 502

Query: 292 IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVD 351
            +  + L+  ++K G  +R  +  E ++      ++K Y  +I +       K    +++
Sbjct: 503 AIICSSLMEAFNKGGEPERVLQLMEFMKKKSIPLNQKSYFEIIASCTMIRDWKTASEMIE 562

Query: 352 MMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403
            + +S    S      +L    +C      G+  N+M++  F   + SC+ +
Sbjct: 563 YLDSSLSSISVGTLNHVLNFLGKC------GKTENMMKL--FYKMVTSCSTV 606


>gi|297739653|emb|CBI29835.3| unnamed protein product [Vitis vinifera]
          Length = 852

 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 137/312 (43%), Gaps = 8/312 (2%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI+A       ++A  + KKM ENG+ PD+VT  +++  Y +     +    FE ++
Sbjct: 235 YNNLINACGSSGNWKEALNVCKKMTENGVGPDLVTHNIVLSAYKRGNQYSKVLSYFELMK 294

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI--YLALLRSFAQCGD 377
               +PD    N +I   V  GQ    + + + M     E   ++  +  ++  ++ CG 
Sbjct: 295 GTNIRPDTTTLNIVIYCLVKLGQNGKAIDIFNSMKEKRSECYPDVVTFTTIIHLYSVCGQ 354

Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
           +       N M  E  +P + S   L+ AY   G   +A S F+ + + G  PD     S
Sbjct: 355 IENCQTAFNTMLAEGLKPNIVSYNALIGAYASHGMDKEAFSVFNEIKKNGFHPDVVSYTS 414

Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           ++ AYGK    +KA+ +   + ++  +P   +Y  L+D  G   L+ EA ++L ++   G
Sbjct: 415 LLNAYGKSGKPEKAMKVFELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEMERNG 474

Query: 498 EAPPFKIQVSLCDMYA---RAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQ 554
             P     VS+C + A   R G + K    L   E +  ++    +   I   L+ G   
Sbjct: 475 VQPNI---VSICTLLAACGRCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEYD 531

Query: 555 DAQRVHGLMEAQ 566
            A  ++  M  +
Sbjct: 532 KALSLYRAMRTK 543



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 117/262 (44%), Gaps = 35/262 (13%)

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL 349
           PD+VT T ++H+YS  G ++  + AF ++ + G +P+   YN++I AY + G  K   S+
Sbjct: 337 PDVVTFTTIIHLYSVCGQIENCQTAFNTMLAEGLKPNIVSYNALIGAYASHGMDKEAFSV 396

Query: 350 VDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409
            + +  +G       Y +LL ++ + G    A ++  +MR    +P L S   L++AYG 
Sbjct: 397 FNEIKKNGFHPDVVSYTSLLNAYGKSGKPEKAMKVFELMRRNHCKPNLVSYNALIDAYGS 456

Query: 410 AGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGK-------KNLL-------------- 448
            G   +A      M R G +P+     +++AA G+       K++L              
Sbjct: 457 KGLLTEAVEILHEMERNGVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGIKLNTTA 516

Query: 449 --------------DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
                         DKAL+L   +     +P P TY VL+    ++    EA   L ++ 
Sbjct: 517 YNSAIGSYLSVGEYDKALSLYRAMRTKKVKPDPVTYNVLISGCCKMSKYGEALGFLDEMM 576

Query: 495 ELGEAPPFKIQVSLCDMYARAG 516
           +L      ++  S+   Y++ G
Sbjct: 577 DLKIPLSKEVYSSVICAYSKQG 598



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 131/290 (45%), Gaps = 2/290 (0%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           E  + N+  Y+ LI A+A     ++A  +  ++ +NG  PD+V+ T L++ Y K+G  ++
Sbjct: 368 EGLKPNIVSYNALIGAYASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGKPEK 427

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A + FE +R +  +P+   YN++I AY + G     + ++  M  +G++ +      LL 
Sbjct: 428 AMKVFELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEMERNGVQPNIVSICTLLA 487

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
           +  +CG       + +   +   +    +    + +Y   G+ D+A S +  M     KP
Sbjct: 488 ACGRCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEYDKALSLYRAMRTKKVKP 547

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           D      +I+   K +   +AL  L E+           Y+ ++    +   + EAE + 
Sbjct: 548 DPVTYNVLISGCCKMSKYGEALGFLDEMMDLKIPLSKEVYSSVICAYSKQGQVTEAESMF 607

Query: 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF 540
            K+  +G  P      ++   Y  A   +KA  AL FLE + + + PD  
Sbjct: 608 TKMKMVGCRPDVITYTAMIHAYDVAENWEKA-SAL-FLEMETDDVQPDSI 655



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/272 (22%), Positives = 117/272 (43%), Gaps = 6/272 (2%)

Query: 296 TVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMIT 355
            +++ ++++   +D+A+  F  ++    +PD + YN++I A+  AGQ +  M+++D M+ 
Sbjct: 166 NMMIRLHARHNIVDQARGLFFEMQKWRCKPDAETYNALINAHGRAGQWRWAMNIMDDMLR 225

Query: 356 SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ 415
           + I  S   Y  L+ +    G+ + A  +   M      P L +  +++ AY +     +
Sbjct: 226 AAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTENGVGPDLVTHNIVLSAYKRGNQYSK 285

Query: 416 ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE--PGPATYTVL 473
             S F+ M     +PD      +I    K     KA+++   +++   E  P   T+T +
Sbjct: 286 VLSYFELMKGTNIRPDTTTLNIVIYCLVKLGQNGKAIDIFNSMKEKRSECYPDVVTFTTI 345

Query: 474 VDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE 533
           +        I   +     +   G  P      +L   YA  G++K+A     F E KK 
Sbjct: 346 IHLYSVCGQIENCQTAFNTMLAEGLKPNIVSYNALIGAYASHGMDKEAFSV--FNEIKKN 403

Query: 534 QMGPD--DFERIINGLLAGGFLQDAQRVHGLM 563
              PD   +  ++N     G  + A +V  LM
Sbjct: 404 GFHPDVVSYTSLLNAYGKSGKPEKAMKVFELM 435



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/374 (19%), Positives = 157/374 (41%), Gaps = 40/374 (10%)

Query: 194 ITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNT-QLYFKVAELVLSEES 252
           + +++L L   +D   LL  W  + + SR ++  L+  + +  + +   +V   + ++++
Sbjct: 100 VVERLLKLNHWDDVEGLLNRW--VGRFSRKNFPLLIREITQIGSLEHSVQVFRWMKNQKN 157

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           +      Y+ +I  HA+ N ++ A  +  +M +    PD  T   L++ + +AG    A 
Sbjct: 158 YCARNDIYNMMIRLHARHNIVDQARGLFFEMQKWRCKPDAETYNALINAHGRAGQWRWAM 217

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI-------------- 358
              + +      P +  YN++I A  ++G  K  +++   M  +G+              
Sbjct: 218 NIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTENGVGPDLVTHNIVLSAY 277

Query: 359 ERSEEI-----YLALLR----------------SFAQCGDVRGAGQITNIM--RIEEFQP 395
           +R  +      Y  L++                   + G    A  I N M  +  E  P
Sbjct: 278 KRGNQYSKVLSYFELMKGTNIRPDTTTLNIVIYCLVKLGQNGKAIDIFNSMKEKRSECYP 337

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
            + + T ++  Y   G  +  ++ F+ M+  G KP+     ++I AY    +  +A ++ 
Sbjct: 338 DVVTFTTIIHLYSVCGQIENCQTAFNTMLAEGLKPNIVSYNALIGAYASHGMDKEAFSVF 397

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
            E++K+GF P   +YT L++  G+     +A ++   +      P      +L D Y   
Sbjct: 398 NEIKKNGFHPDVVSYTSLLNAYGKSGKPEKAMKVFELMRRNHCKPNLVSYNALIDAYGSK 457

Query: 516 GIEKKALQALGFLE 529
           G+  +A++ L  +E
Sbjct: 458 GLLTEAVEILHEME 471


>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 499

 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 152/327 (46%), Gaps = 4/327 (1%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           V+ +   + +   ++ L++A  K   ++   ++ ++M      P+++T ++L+    K G
Sbjct: 114 VMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCG 173

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            +++A + F  ++S G +P+   Y SMI     +G       L + M + G+  +  +Y 
Sbjct: 174 GVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYN 233

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           +L+    + G    A ++   M  +  QP   + T LV   G AG   +AR  F     +
Sbjct: 234 SLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDV 293

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G   D      +I    K   LD+A  +  ELE+DG  P   T+  L+D L +   I++A
Sbjct: 294 GCALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDA 353

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERII 544
             LLG +   G  P   +  +L D   ++G  ++A Q L  LE +     PD   +  +I
Sbjct: 354 FILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLL--LEMQSLGYEPDVVTYNTLI 411

Query: 545 NGLLAGGFLQDAQRVHGLMEAQGFAAS 571
           +    GG ++DA R+   + A+GFA +
Sbjct: 412 DESCKGGRIEDALRLFEEISAKGFANT 438



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 120/274 (43%), Gaps = 6/274 (2%)

Query: 298 LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG 357
           L   Y+ AG L+++ EA + +  H        YNS+I A+V AG  +  +++  +M  SG
Sbjct: 60  LARGYASAGLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSG 119

Query: 358 IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
           +      +  L+ +F +   V    ++   M+ +   P + + ++L++A  + G  ++A 
Sbjct: 120 LRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKAL 179

Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
             F  M   G +P+     SMI   GK   +DKA  L  E+  +G       Y  L+  L
Sbjct: 180 KVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGL 239

Query: 478 GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALG-FLEAKKEQMG 536
           GR    + A +L  ++   G  P     V+   +    G+  +A +A   F EA+     
Sbjct: 240 GRSGRADAAAKLFREMLSKGLQPD---HVTFTSLVYGLGVAGRASEARRIFQEARDVGCA 296

Query: 537 PDD--FERIINGLLAGGFLQDAQRVHGLMEAQGF 568
            D   +  +I+ L     L +A  + G +E  G 
Sbjct: 297 LDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGL 330



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 115/273 (42%), Gaps = 3/273 (1%)

Query: 219 QPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           +P+   + +++D L +  +    F + E + SE    T V  Y+ LI    +    + A 
Sbjct: 191 RPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVV-YNSLIHGLGRSGRADAAA 249

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
           ++ ++M   G+ PD VT T LV+    AG    A+  F+  R  G   D  +YN +I   
Sbjct: 250 KLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTL 309

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
             + +      +   +   G+      + AL+    + G +  A  +   M+     P +
Sbjct: 310 CKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDV 369

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
                L++   ++G  ++A      M  LG++PD     ++I    K   ++ AL L  E
Sbjct: 370 TVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRLFEE 429

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           +   GF     TY  +++ L     ++EA +L 
Sbjct: 430 ISAKGF-ANTVTYNTILNGLCMAGRVDEAYKLF 461



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 92/210 (43%), Gaps = 9/210 (4%)

Query: 218 LQPSRIDWINLLDRL----REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCL 273
           LQP  + + +L+  L    R    +  F+ A  V        +V  Y+ LID   K   L
Sbjct: 260 LQPDHVTFTSLVYGLGVAGRASEARRIFQEARDV----GCALDVNLYNVLIDTLCKSKRL 315

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           ++A  I  ++ E+G+VPD+ T   L+    K+G +  A      ++  G  PD  VYN++
Sbjct: 316 DEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTL 375

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           I     +G+ +    L+  M + G E     Y  L+    + G +  A ++   +  + F
Sbjct: 376 IDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRLFEEISAKGF 435

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
             T+   T+L      AG  D+A   F+ M
Sbjct: 436 ANTVTYNTIL-NGLCMAGRVDEAYKLFNGM 464



 Score = 42.4 bits (98), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 71/166 (42%), Gaps = 16/166 (9%)

Query: 194 ITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLR-----EQNTQLYFKVAELV 247
           + D +    +  D   LL + K     P    +  L+D LR     E+  QL  ++  L 
Sbjct: 340 LMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSL- 398

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
                ++ +V  Y+ LID   K   +EDA R+ ++++  G    +  +T+L  +   AG 
Sbjct: 399 ----GYEPDVVTYNTLIDESCKGGRIEDALRLFEEISAKGFANTVTYNTILNGL-CMAGR 453

Query: 308 LDRAKEAFESLRSHG----FQPDKKVYNSMIMAYVNAGQPKLGMSL 349
           +D A + F  ++         PD   Y +++     AG  +L  SL
Sbjct: 454 VDEAYKLFNGMKQETVDGVIDPDFVTYTTLLNGARQAGLSELANSL 499


>gi|359481811|ref|XP_002278330.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Vitis vinifera]
          Length = 848

 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 137/312 (43%), Gaps = 8/312 (2%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI+A       ++A  + KKM ENG+ PD+VT  +++  Y +     +    FE ++
Sbjct: 235 YNNLINACGSSGNWKEALNVCKKMTENGVGPDLVTHNIVLSAYKRGNQYSKVLSYFELMK 294

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI--YLALLRSFAQCGD 377
               +PD    N +I   V  GQ    + + + M     E   ++  +  ++  ++ CG 
Sbjct: 295 GTNIRPDTTTLNIVIYCLVKLGQNGKAIDIFNSMKEKRSECYPDVVTFTTIIHLYSVCGQ 354

Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
           +       N M  E  +P + S   L+ AY   G   +A S F+ + + G  PD     S
Sbjct: 355 IENCQTAFNTMLAEGLKPNIVSYNALIGAYASHGMDKEAFSVFNEIKKNGFHPDVVSYTS 414

Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           ++ AYGK    +KA+ +   + ++  +P   +Y  L+D  G   L+ EA ++L ++   G
Sbjct: 415 LLNAYGKSGKPEKAMKVFELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEMERNG 474

Query: 498 EAPPFKIQVSLCDMYA---RAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQ 554
             P     VS+C + A   R G + K    L   E +  ++    +   I   L+ G   
Sbjct: 475 VQPNI---VSICTLLAACGRCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEYD 531

Query: 555 DAQRVHGLMEAQ 566
            A  ++  M  +
Sbjct: 532 KALSLYRAMRTK 543



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 117/262 (44%), Gaps = 35/262 (13%)

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL 349
           PD+VT T ++H+YS  G ++  + AF ++ + G +P+   YN++I AY + G  K   S+
Sbjct: 337 PDVVTFTTIIHLYSVCGQIENCQTAFNTMLAEGLKPNIVSYNALIGAYASHGMDKEAFSV 396

Query: 350 VDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409
            + +  +G       Y +LL ++ + G    A ++  +MR    +P L S   L++AYG 
Sbjct: 397 FNEIKKNGFHPDVVSYTSLLNAYGKSGKPEKAMKVFELMRRNHCKPNLVSYNALIDAYGS 456

Query: 410 AGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGK-------KNLL-------------- 448
            G   +A      M R G +P+     +++AA G+       K++L              
Sbjct: 457 KGLLTEAVEILHEMERNGVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGIKLNTTA 516

Query: 449 --------------DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
                         DKAL+L   +     +P P TY VL+    ++    EA   L ++ 
Sbjct: 517 YNSAIGSYLSVGEYDKALSLYRAMRTKKVKPDPVTYNVLISGCCKMSKYGEALGFLDEMM 576

Query: 495 ELGEAPPFKIQVSLCDMYARAG 516
           +L      ++  S+   Y++ G
Sbjct: 577 DLKIPLSKEVYSSVICAYSKQG 598



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 131/290 (45%), Gaps = 2/290 (0%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           E  + N+  Y+ LI A+A     ++A  +  ++ +NG  PD+V+ T L++ Y K+G  ++
Sbjct: 368 EGLKPNIVSYNALIGAYASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGKPEK 427

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A + FE +R +  +P+   YN++I AY + G     + ++  M  +G++ +      LL 
Sbjct: 428 AMKVFELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEMERNGVQPNIVSICTLLA 487

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
           +  +CG       + +   +   +    +    + +Y   G+ D+A S +  M     KP
Sbjct: 488 ACGRCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEYDKALSLYRAMRTKKVKP 547

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           D      +I+   K +   +AL  L E+           Y+ ++    +   + EAE + 
Sbjct: 548 DPVTYNVLISGCCKMSKYGEALGFLDEMMDLKIPLSKEVYSSVICAYSKQGQVTEAESMF 607

Query: 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF 540
            K+  +G  P      ++   Y  A   +KA  AL FLE + + + PD  
Sbjct: 608 TKMKMVGCRPDVITYTAMIHAYDVAENWEKA-SAL-FLEMETDDVQPDSI 655



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/272 (22%), Positives = 117/272 (43%), Gaps = 6/272 (2%)

Query: 296 TVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMIT 355
            +++ ++++   +D+A+  F  ++    +PD + YN++I A+  AGQ +  M+++D M+ 
Sbjct: 166 NMMIRLHARHNIVDQARGLFFEMQKWRCKPDAETYNALINAHGRAGQWRWAMNIMDDMLR 225

Query: 356 SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ 415
           + I  S   Y  L+ +    G+ + A  +   M      P L +  +++ AY +     +
Sbjct: 226 AAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTENGVGPDLVTHNIVLSAYKRGNQYSK 285

Query: 416 ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE--PGPATYTVL 473
             S F+ M     +PD      +I    K     KA+++   +++   E  P   T+T +
Sbjct: 286 VLSYFELMKGTNIRPDTTTLNIVIYCLVKLGQNGKAIDIFNSMKEKRSECYPDVVTFTTI 345

Query: 474 VDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE 533
           +        I   +     +   G  P      +L   YA  G++K+A     F E KK 
Sbjct: 346 IHLYSVCGQIENCQTAFNTMLAEGLKPNIVSYNALIGAYASHGMDKEAFSV--FNEIKKN 403

Query: 534 QMGPD--DFERIINGLLAGGFLQDAQRVHGLM 563
              PD   +  ++N     G  + A +V  LM
Sbjct: 404 GFHPDVVSYTSLLNAYGKSGKPEKAMKVFELM 435



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/374 (19%), Positives = 157/374 (41%), Gaps = 40/374 (10%)

Query: 194 ITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNT-QLYFKVAELVLSEES 252
           + +++L L   +D   LL  W  + + SR ++  L+  + +  + +   +V   + ++++
Sbjct: 100 VVERLLKLNHWDDVEGLLNRW--VGRFSRKNFPLLIREITQIGSLEHSVQVFRWMKNQKN 157

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           +      Y+ +I  HA+ N ++ A  +  +M +    PD  T   L++ + +AG    A 
Sbjct: 158 YCARNDIYNMMIRLHARHNIVDQARGLFFEMQKWRCKPDAETYNALINAHGRAGQWRWAM 217

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI-------------- 358
              + +      P +  YN++I A  ++G  K  +++   M  +G+              
Sbjct: 218 NIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTENGVGPDLVTHNIVLSAY 277

Query: 359 ERSEEI-----YLALLR----------------SFAQCGDVRGAGQITNIM--RIEEFQP 395
           +R  +      Y  L++                   + G    A  I N M  +  E  P
Sbjct: 278 KRGNQYSKVLSYFELMKGTNIRPDTTTLNIVIYCLVKLGQNGKAIDIFNSMKEKRSECYP 337

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
            + + T ++  Y   G  +  ++ F+ M+  G KP+     ++I AY    +  +A ++ 
Sbjct: 338 DVVTFTTIIHLYSVCGQIENCQTAFNTMLAEGLKPNIVSYNALIGAYASHGMDKEAFSVF 397

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
            E++K+GF P   +YT L++  G+     +A ++   +      P      +L D Y   
Sbjct: 398 NEIKKNGFHPDVVSYTSLLNAYGKSGKPEKAMKVFELMRRNHCKPNLVSYNALIDAYGSK 457

Query: 516 GIEKKALQALGFLE 529
           G+  +A++ L  +E
Sbjct: 458 GLLTEAVEILHEME 471


>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
 gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
          Length = 636

 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 146/312 (46%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E S + +V  ++ L+D   K + L++A+++L+ M +    P+++T + L+    K G 
Sbjct: 208 MRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQ 267

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A+E F+ +   G +P+   YNS+I  +         + L++ M  +G       Y  
Sbjct: 268 VRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNT 327

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    + G    A ++   M+ +   P + + + L+  + +    D AR+ FD M++  
Sbjct: 328 LIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQA 387

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD    ++++  Y    L+D A  LL E+      P   TYT LVD   ++  + EA 
Sbjct: 388 VLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEAR 447

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
           ++L ++++ G  P      +L D + RAG    A + L  +     Q     +  +I G 
Sbjct: 448 RVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGF 507

Query: 548 LAGGFLQDAQRV 559
              G L++A+++
Sbjct: 508 CGTGDLEEARKM 519



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 124/270 (45%), Gaps = 5/270 (1%)

Query: 244 AELVLSEESFQT----NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLV 299
           + L+L EE   T    ++  Y+ LID   K     +A R+   M      PD++T + L+
Sbjct: 305 SALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLI 364

Query: 300 HMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
             + K   +D A+  F+ +      PD   +++++  Y NAG       L++ M+ S   
Sbjct: 365 GGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCS 424

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
                Y +L+  F + G +  A ++   M     QP + + T L++A+ +AG P  A   
Sbjct: 425 PDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKL 484

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD-GFEPGPATYTVLVDWLG 478
            + M+  G +P+     S+I  +     L++A  +L  LE+D   +     Y V++D L 
Sbjct: 485 LEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERLERDENCKADMFAYRVMMDGLC 544

Query: 479 RLQLINEAEQLLGKISELGEAPPFKIQVSL 508
           R   ++ A +LL  I + G  P   I V+L
Sbjct: 545 RTGRMSAALELLEAIKQSGTPPRHDIYVAL 574



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 149/354 (42%), Gaps = 7/354 (1%)

Query: 210 LLAEWKEL-LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAH 267
           LL E KE  L P+ + +  ++    R+      +K+   ++ E     N+  Y+ L+   
Sbjct: 64  LLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMV-ENGCMPNLVTYNTLLSGL 122

Query: 268 AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK 327
            +   +++A  +L +M E G+ PD  +   L+    K G +D A + FE   +    PD 
Sbjct: 123 CRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDV 182

Query: 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNI 387
             Y+++I      G+      L + M  +  E     + AL+    +   ++ A Q+   
Sbjct: 183 VAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLET 242

Query: 388 MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447
           M      P + + + L++   + G    A+  F  MI  G +P+     S+I  +   N 
Sbjct: 243 MEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNG 302

Query: 448 LDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVS 507
           +D AL L+ E+   G  P   TY  L+D L +     EA +L G +      P       
Sbjct: 303 VDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSC 362

Query: 508 LCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRV 559
           L   + +  +E+  +    F +  K+ + PD   F  ++ G    G + DA+R+
Sbjct: 363 LIGGFCK--LERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERL 414



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 151/349 (43%), Gaps = 17/349 (4%)

Query: 220 PSRIDWINLLDRL----REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLED 275
           P+ I + +L+D L    + ++ Q  FK   +++     + NV  Y+ LI      N ++ 
Sbjct: 250 PNVITYSSLIDGLCKTGQVRDAQEVFK--RMIV--RGIEPNVVTYNSLIHGFCMTNGVDS 305

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A  ++++M   G +PDI+T   L+    K G    A   F  +++    PD   Y+ +I 
Sbjct: 306 ALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIG 365

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
            +    +  +  +L D M+   +      +  L+  +   G V  A ++   M   +  P
Sbjct: 366 GFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSP 425

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
            + + T LV+ + + G   +AR     M + G +P+     ++I A+ +      A  LL
Sbjct: 426 DVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLL 485

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI--SELGEAPPFKIQVSLCDMYA 513
            E+  +G +P   TY  L+        + EA ++L ++   E  +A  F  +V + D   
Sbjct: 486 EEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERLERDENCKADMFAYRVMM-DGLC 544

Query: 514 RAGIEKKALQALGFLEAKKEQMGP---DDFERIINGLLAGGFLQDAQRV 559
           R G    AL+    LEA K+   P   D +  +I GL  G  L  A  V
Sbjct: 545 RTGRMSAALE---LLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEV 590



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 113/261 (43%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  ++ +ID   K N L +A     KM + G VP+  T  VL++ + K   + RA    
Sbjct: 6   NVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLL 65

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + ++  G  P+   Y+++I  +    +      L   M+ +G   +   Y  LL    + 
Sbjct: 66  KEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRN 125

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A ++ + MR    QP   S   L+    + G  D A   F+        PD    
Sbjct: 126 GLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAY 185

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
           +++IA   K   LD+A  L  ++ ++  EP   T+T L+D L +   + EA+Q+L  + +
Sbjct: 186 STLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMED 245

Query: 496 LGEAPPFKIQVSLCDMYARAG 516
               P      SL D   + G
Sbjct: 246 RNCTPNVITYSSLIDGLCKTG 266



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 83/375 (22%), Positives = 157/375 (41%), Gaps = 26/375 (6%)

Query: 223 IDWINLLDRLREQN----TQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAER 278
           I W  ++D L + N       YF      + ++    N   Y+ LI+   K + +  A  
Sbjct: 8   ITWTIMIDGLCKANRLPEATTYFAK----MKKKGTVPNEWTYNVLINGFCKVHKVHRAYL 63

Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338
           +LK+M E+G+ P++VT + ++H + +   +D A + F  +  +G  P+   YN+++    
Sbjct: 64  LLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLC 123

Query: 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398
             G       L+D M   G++  +  Y  L+    + G +  A ++       +  P + 
Sbjct: 124 RNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVV 183

Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
           + + L+    + G  D+A   F+ M     +PD     +++    K + L +A  +L  +
Sbjct: 184 AYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETM 243

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
           E     P   TY+ L+D L +   + +A+++  ++   G  P      SL   +      
Sbjct: 244 EDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGV 303

Query: 519 KKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQ---------- 566
             AL  L   E       PD   +  +I+GL   G   +A R+ G M+A+          
Sbjct: 304 DSAL--LLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYS 361

Query: 567 ----GFAASERLKVA 577
               GF   ER+ +A
Sbjct: 362 CLIGGFCKLERIDMA 376



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 90/416 (21%), Positives = 157/416 (37%), Gaps = 76/416 (18%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E     NV  YS +I    ++  ++ A ++ ++M ENG +P++VT   L+    + G 
Sbjct: 68  MKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGL 127

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSM----------------------------IMAYVN 339
           +D A E  + +R  G QPDK  Y+++                            ++AY  
Sbjct: 128 MDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYST 187

Query: 340 --AGQPKLG-----MSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
             AG  K G       L + M  +  E     + AL+    +   ++ A Q+   M    
Sbjct: 188 LIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRN 247

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P + + + L++   + G    A+  F  MI  G +P+     S+I  +   N +D AL
Sbjct: 248 CTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSAL 307

Query: 453 NLLLELEKDGF-----------------------------------EPGPATYTVLVDWL 477
            L+ E+   G                                     P   TY+ L+   
Sbjct: 308 LLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGF 367

Query: 478 GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP 537
            +L+ I+ A  L   + +    P      +L + Y  AG+   A + L   E       P
Sbjct: 368 CKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLE--EMVASDCSP 425

Query: 538 D--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQPT 591
           D   +  +++G    G + +A+RV   M  +G   +     ALI +  F R  +PT
Sbjct: 426 DVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDA--FCRAGKPT 479



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 114/278 (41%)

Query: 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV 350
           +++T T+++    KA  L  A   F  ++  G  P++  YN +I  +    +      L+
Sbjct: 6   NVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLL 65

Query: 351 DMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410
             M  SG+  +   Y  ++  F +   V  A ++   M      P L +   L+    + 
Sbjct: 66  KEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRN 125

Query: 411 GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATY 470
           G  D+A    D M   G +PD     +++A   K   +D AL +  +       P    Y
Sbjct: 126 GLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAY 185

Query: 471 TVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEA 530
           + L+  L +   ++EA +L  K+ E    P      +L D   +    ++A Q L  +E 
Sbjct: 186 STLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMED 245

Query: 531 KKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
           +        +  +I+GL   G ++DAQ V   M  +G 
Sbjct: 246 RNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGI 283


>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
          Length = 559

 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 161/374 (43%), Gaps = 11/374 (2%)

Query: 129 AAECAEVEEKPKVITLPKRHGKIKYKIYGLDLSDPKWTEVAEKIHERGEMILPEEPKPIT 188
           A +C  +  K  +       G +  ++  L+L+ P W    E        IL     P  
Sbjct: 174 AIQCFRLVRKHNLQIPFHSCGYLFDRLMKLNLTSPAWAFYEE--------ILDCGYPPDV 225

Query: 189 GKCKLITDKILSLEKEEDPSPLLAEW-KELLQPSRIDWINLLD-RLREQNTQLYFKVAEL 246
            K  ++  ++    K  +   L  E  K  L+P+ + +  L++   +  N    F++   
Sbjct: 226 CKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRF 285

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++    F  +V  YS LI+   KE  L+DA ++  +M + G+VP+ VT T L++ +   G
Sbjct: 286 MMENRVFP-DVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTG 344

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
             D   E ++ +   G +PD   YN++I      G  +    LV  M   G++  +  Y 
Sbjct: 345 RADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYT 404

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+    + GD+  A +I   M  E  +    + T L+  + + G   +A      M+  
Sbjct: 405 MLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEA 464

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G KPDD     +I  + KK  +     LL E++ DG  PG  TY VL++ L +   +  A
Sbjct: 465 GIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNA 524

Query: 487 EQLLGKISELGEAP 500
             LL  +  LG  P
Sbjct: 525 NMLLDAMLNLGVVP 538



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 85/177 (48%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ LI+   K   L +A++++ +M + G+ PD  T T+L+    K G+L+ A E  
Sbjct: 364 DVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIR 423

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + +   G + D   + ++I  +   GQ       +  M+ +GI+  +  Y  ++  F + 
Sbjct: 424 KEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKK 483

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
           GDV+   ++   M+ +   P + +  +L+    + G    A    D M+ LG  PDD
Sbjct: 484 GDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDD 540



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 55/110 (50%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++ LI    +E  + +AER L++M E GI PD  T T+++H + K G++    +  + ++
Sbjct: 438 FTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQ 497

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
             G  P    YN ++      GQ K    L+D M+  G+   +  Y  LL
Sbjct: 498 CDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDDITYNILL 547


>gi|242084804|ref|XP_002442827.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
 gi|241943520|gb|EES16665.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
          Length = 899

 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 121/255 (47%), Gaps = 3/255 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E+     V  Y+ LI    K++  ++A R+ + M +NG+ PD     VL H   K+G 
Sbjct: 430 MQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTHALCKSG- 488

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
             RA+EA+  L   G    K  Y S++  +  AG       L++ M+  G +     Y  
Sbjct: 489 --RAEEAYSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADSYTYSV 546

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           LL++  +   +  A  I + M +   +  + + T+++    + G  D A+S F+ MI  G
Sbjct: 547 LLQALCKQKKLNEALSILDQMTLSGVKCNIVAYTIIISEMIKEGKHDHAKSMFNEMISSG 606

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
           HKP        I++Y K   +++A +L+ E+E+DG  P   TY V ++  G +  ++ A 
Sbjct: 607 HKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVAPDVVTYNVFINGCGHMGYMDRAF 666

Query: 488 QLLGKISELGEAPPF 502
             L ++ +    P +
Sbjct: 667 STLKRMIDASCEPNY 681



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 74/374 (19%), Positives = 155/374 (41%), Gaps = 38/374 (10%)

Query: 218 LQPSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
             P+ I + N+++   + +      +V   +LS    + +++ Y  LI+   K+   ++A
Sbjct: 295 FTPTVITFTNIINGYCKAERIDDALRVKTSMLSSNC-KLDLQAYGVLINVLIKKCRFKEA 353

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
           +  + +M  NG+ P++V  T ++  Y K G +  A E F  +   G +P+   Y+S+I  
Sbjct: 354 KETVSEMFANGLAPNVVIYTSIIDGYCKVGKVGAALEVFRLMEHEGCRPNAWTYSSLIYG 413

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP- 395
            +   +    M+L+  M   GI      Y  L++   +  +   A ++  +M      P 
Sbjct: 414 LIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPD 473

Query: 396 -------------------------------TLESCTLLVEAYGQAGDPDQARSNFDYMI 424
                                          T  + T LV+ + +AG+ D A    + M+
Sbjct: 474 EQAYNVLTHALCKSGRAEEAYSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMV 533

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
             G K D    + ++ A  K+  L++AL++L ++   G +     YT+++  + +    +
Sbjct: 534 NEGCKADSYTYSVLLQALCKQKKLNEALSILDQMTLSGVKCNIVAYTIIISEMIKEGKHD 593

Query: 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFER 542
            A+ +  ++   G  P           Y + G  ++A   +G  E +++ + PD   +  
Sbjct: 594 HAKSMFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIG--EMERDGVAPDVVTYNV 651

Query: 543 IINGLLAGGFLQDA 556
            ING    G++  A
Sbjct: 652 FINGCGHMGYMDRA 665



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 124/297 (41%), Gaps = 6/297 (2%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG-NLDRAKEA 314
           +V  Y+ +ID + K   ++DA  I   M  NG  PD  T  +L+  Y   G   D A+E 
Sbjct: 229 SVWTYNAMIDGYCKSGRMKDALGIKALMERNGCNPDDWTYNILI--YGLCGEKPDEAEEL 286

Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
                  GF P    + ++I  Y  A +    + +   M++S  +   + Y  L+    +
Sbjct: 287 LNDAIVRGFTPTVITFTNIINGYCKAERIDDALRVKTSMLSSNCKLDLQAYGVLINVLIK 346

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
               + A +  + M      P +   T +++ Y + G    A   F  M   G +P+   
Sbjct: 347 KCRFKEAKETVSEMFANGLAPNVVIYTSIIDGYCKVGKVGAALEVFRLMEHEGCRPNAWT 406

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
            +S+I    +   L KA+ L+ ++++DG  PG  TYT L+    +    + A +L   + 
Sbjct: 407 YSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMME 466

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGG 551
           + G  P  +    L     ++G   +A +A  FL  K   +    +  +++G    G
Sbjct: 467 QNGLTPDEQAYNVLTHALCKSG---RAEEAYSFLVRKGVVLTKVTYTSLVDGFSKAG 520



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/310 (20%), Positives = 120/310 (38%), Gaps = 20/310 (6%)

Query: 221 SRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERIL 280
           +++ + +L+D   +     +  V    +  E  + +   YS L+ A  K+  L +A  IL
Sbjct: 505 TKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADSYTYSVLLQALCKQKKLNEALSIL 564

Query: 281 KKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNA 340
            +M  +G+  +IV  T+++    K G  D AK  F  + S G +P    Y   I +Y   
Sbjct: 565 DQMTLSGVKCNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSATTYTVFISSYCKI 624

Query: 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
           GQ +    L+  M   G+      Y   +      G +  A      M     +P   + 
Sbjct: 625 GQIEEAEHLIGEMERDGVAPDVVTYNVFINGCGHMGYMDRAFSTLKRMIDASCEPNYWTY 684

Query: 401 TLLVEAYGQAG----------------DPDQARSNFDYMIRLGHKPDDRCTASMIAAYGK 444
            +L++ + +                  + D      + M++ G  P     +S+IA + K
Sbjct: 685 WILLKHFLKMSLVDAHYVDTSGMWNWIELDTVWQLLERMVKHGLNPTAVTYSSIIAGFCK 744

Query: 445 KNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFK- 503
              L++A  L   +      P    YT+L+     ++L  +A   +  + E G  P  + 
Sbjct: 745 ATRLEEACVLFDHMRGKDISPNEEIYTMLIKCCCDIKLFGKAVSFVTDMIEFGFQPHLES 804

Query: 504 ---IQVSLCD 510
              + V LCD
Sbjct: 805 YHYLIVGLCD 814



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 84/216 (38%), Gaps = 59/216 (27%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF---- 315
           Y+  I ++ K   +E+AE ++ +M  +G+ PD+VT  V ++     G +DRA        
Sbjct: 614 YTVFISSYCKIGQIEEAEHLIGEMERDGVAPDVVTYNVFINGCGHMGYMDRAFSTLKRMI 673

Query: 316 -----------------------------------------------ESLRSHGFQPDKK 328
                                                          E +  HG  P   
Sbjct: 674 DASCEPNYWTYWILLKHFLKMSLVDAHYVDTSGMWNWIELDTVWQLLERMVKHGLNPTAV 733

Query: 329 VYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQ----I 384
            Y+S+I  +  A + +    L D M    I  +EEIY  L++    C D++  G+    +
Sbjct: 734 TYSSIIAGFCKATRLEEACVLFDHMRGKDISPNEEIYTMLIKC---CCDIKLFGKAVSFV 790

Query: 385 TNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
           T+++    FQP LES   L+      GD D+A+S F
Sbjct: 791 TDMIEF-GFQPHLESYHYLIVGLCDEGDYDKAKSLF 825


>gi|414588908|tpg|DAA39479.1| TPA: chloroplast RNA splicing4 [Zea mays]
          Length = 1438

 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 131/274 (47%), Gaps = 2/274 (0%)

Query: 218 LQPSRIDWINLLDRLREQ-NTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L+P  I +  L+    +  N +    V E +++ E  + ++  Y+ ++  H +    E+A
Sbjct: 289 LRPDVITYNTLISACSQSSNLEDAVTVFEDMIASEC-RPDLWTYNAMVSVHGRCGKAEEA 347

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
           ER+ +++ E G +PD +T   L++ ++K GN+D+ +   E L   GF+ ++  YN+MI  
Sbjct: 348 ERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMIHM 407

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           Y   G+  L + L D M   G       Y  ++ S  +   +  AG++   M     +PT
Sbjct: 408 YGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDAGLKPT 467

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           L + + L+ AY + G    A + FD MI  G KPD      M+  + +    +K L L  
Sbjct: 468 LIAFSALICAYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFARSGDTEKMLCLYR 527

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           ++  D + P    Y VL+  L +     E E+++
Sbjct: 528 KMMNDNYRPDDDMYQVLLVALAKEDKCEEIEEVI 561



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 131/263 (49%), Gaps = 2/263 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR--AKE 313
            V+ ++ ++  +A+    +DA ++L  M++ GI PD+V+   L++  SK+G L    A +
Sbjct: 220 TVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVALD 279

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
               +R  G +PD   YN++I A   +   +  +++ + MI S        Y A++    
Sbjct: 280 LLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHG 339

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           +CG    A ++   +  + F P   +   L+ A+ + G+ D+     + +++ G K ++ 
Sbjct: 340 RCGKAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEI 399

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
              +MI  YGK   LD A+ L  E+   G  P   TYTV++D LG++  I EA ++L  +
Sbjct: 400 TYNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDM 459

Query: 494 SELGEAPPFKIQVSLCDMYARAG 516
           ++ G  P      +L   YA+ G
Sbjct: 460 TDAGLKPTLIAFSALICAYAKGG 482



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 126/281 (44%), Gaps = 6/281 (2%)

Query: 253  FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
            +  N+  Y  +I      N   D E ++ +M   G  PD+     L++MY+ AGN DR  
Sbjct: 881  YLPNMHLYRSMISLLCHHNRFRDVELMIAEMEGAGFKPDLAILNALLNMYTAAGNFDRTT 940

Query: 313  EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
            + + S+   G +PD+  YN++I+ Y  + +P+ G +L++ M   G+    + Y +LL + 
Sbjct: 941  QVYRSILEAGLEPDEDTYNTLIVMYCRSFRPEEGFTLLNEMGKRGLTPKLQSYKSLLAAS 1000

Query: 373  AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            A+      A QI   MR + +Q       ++++ Y  AG+  +A +    M   G +P  
Sbjct: 1001 AKAELREQADQIFEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKEDGIEPTI 1060

Query: 433  RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
                 ++ +YG      +A N+L  L+    E     Y+ + D   +    N     L +
Sbjct: 1061 ATMHILMTSYGTAGQPREAENVLNNLKSSSLEVSTLPYSTVFDAYLKNGDYNHGTTKLLE 1120

Query: 493  ISELGEAPPFKI------QVSLCDMYARAGIEKKALQALGF 527
            +   G  P  ++        SLC+  A A +  K+LQ  GF
Sbjct: 1121 MKRDGVEPDHQVWTCFIRAASLCEQTADAILLLKSLQDCGF 1161



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/373 (19%), Positives = 157/373 (42%), Gaps = 46/373 (12%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L E+ F  +   Y+ L+ A AKE  ++  E   +++ + G   + +T   ++HMY K G 
Sbjct: 354 LVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMIHMYGKMGR 413

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           LD A   ++ +R+ G  PD   Y  MI +     +      +++ M  +G++ +   + A
Sbjct: 414 LDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDAGLKPTLIAFSA 473

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+ ++A+ G    A    + M     +P   +  ++++ + ++GD ++    +  M+   
Sbjct: 474 LICAYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFARSGDTEKMLCLYRKMMNDN 533

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
           ++PDD     ++ A  K++  ++   ++ ++E           T+L+    + + +++  
Sbjct: 534 YRPDDDMYQVLLVALAKEDKCEEIEEVIQDMELLCRMNLGIISTMLI----KARCVSQGA 589

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG----------- 536
           +LL K    G  P  K   S+ + Y    + +K  + L  LE   E +            
Sbjct: 590 KLLKKACLQGYKPDIKSLRSIMNAYV---MTEKHEEGLSLLECICEHVSFSQDLISECSI 646

Query: 537 ------------------------PDD----FERIINGLLAGGFLQDAQRVHGLMEAQGF 568
                                   PD     +E +I  L+   F  +A +V   M+  G 
Sbjct: 647 MLLCRKQTSISAYEQYSQRLMLKYPDQNCNLYEYLITCLIEAEFFSEACQVFCDMQFIGI 706

Query: 569 AASERLKVALISS 581
            AS+ +  ++IS+
Sbjct: 707 EASKSIYESIIST 719



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 118/264 (44%), Gaps = 13/264 (4%)

Query: 234  EQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIV 293
            ++ TQ+Y  + E        + +   Y+ LI  + +    E+   +L +M + G+ P + 
Sbjct: 937  DRTTQVYRSILE-----AGLEPDEDTYNTLIVMYCRSFRPEEGFTLLNEMGKRGLTPKLQ 991

Query: 294  TSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMM 353
            +   L+   +KA   ++A + FE +RS  +Q ++ +Y+ M+  Y NAG      +L+ +M
Sbjct: 992  SYKSLLAASAKAELREQADQIFEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVM 1051

Query: 354  ITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDP 413
               GIE +      L+ S+   G  R A  + N ++    + +    + + +AY + GD 
Sbjct: 1052 KEDGIEPTIATMHILMTSYGTAGQPREAENVLNNLKSSSLEVSTLPYSTVFDAYLKNGDY 1111

Query: 414  DQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGF--------EP 465
            +   +    M R G +PD +     I A         A+ LL  L+  GF        E 
Sbjct: 1112 NHGTTKLLEMKRDGVEPDHQVWTCFIRAASLCEQTADAILLLKSLQDCGFDLPIRLLTER 1171

Query: 466  GPATYTVLVDWLGRLQLINEAEQL 489
             P+  + + ++L  L+ + ++  L
Sbjct: 1172 TPSLLSEIANYLEELEALEDSAAL 1195



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 66/307 (21%), Positives = 127/307 (41%), Gaps = 3/307 (0%)

Query: 263  LIDAHAKENCLEDAERILKKMNE-NGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSH 321
            +I+A+ K    + AE ++K + + +GI  D      L+H Y+++G  ++A+  F+++   
Sbjct: 752  IIEAYGKIKLWQQAEILVKGLRQASGI--DRRIWNALIHAYAESGLYEKARAVFDNMIKT 809

Query: 322  GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGA 381
            G  P     N M+ A +  G+      +V+ +     + S+   L LL +FA+ GDV   
Sbjct: 810  GPLPTVDSVNGMMRALIVDGRLDELYVVVEELQDMNFKISKSTVLLLLDAFAKAGDVFEV 869

Query: 382  GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441
             +I N M+   + P +     ++                  M   G KPD     +++  
Sbjct: 870  MKIYNGMKAAGYLPNMHLYRSMISLLCHHNRFRDVELMIAEMEGAGFKPDLAILNALLNM 929

Query: 442  YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
            Y      D+   +   + + G EP   TY  L+    R     E   LL ++ + G  P 
Sbjct: 930  YTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLIVMYCRSFRPEEGFTLLNEMGKRGLTPK 989

Query: 502  FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHG 561
             +   SL    A+A + ++A Q    + +K  Q+    +  ++      G    A+ +  
Sbjct: 990  LQSYKSLLAASAKAELREQADQIFEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLA 1049

Query: 562  LMEAQGF 568
            +M+  G 
Sbjct: 1050 VMKEDGI 1056



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 68/319 (21%), Positives = 146/319 (45%), Gaps = 33/319 (10%)

Query: 218 LQPSRIDWINLLDRL-REQNTQ----LYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC 272
           ++P R+ ++ +LD   R  +T+    LY K     +  ++++ +   Y  L+ A AKE+ 
Sbjct: 499 VKPDRLAYLVMLDVFARSGDTEKMLCLYRK-----MMNDNYRPDDDMYQVLLVALAKEDK 553

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
            E+ E +++ M     +   + ST+L+    KA  + +  +  +     G++PD K   S
Sbjct: 554 CEEIEEVIQDMELLCRMNLGIISTMLI----KARCVSQGAKLLKKACLQGYKPDIKSLRS 609

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           ++ AYV   + + G+SL++  I   +  S+++        ++C  +    + T+I   E+
Sbjct: 610 IMNAYVMTEKHEEGLSLLE-CICEHVSFSQDL-------ISECSIMLLCRKQTSISAYEQ 661

Query: 393 FQPTL------ESCTL---LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYG 443
           +   L      ++C L   L+    +A    +A   F  M  +G +       S+I+ Y 
Sbjct: 662 YSQRLMLKYPDQNCNLYEYLITCLIEAEFFSEACQVFCDMQFIGIEASKSIYESIISTYC 721

Query: 444 KKNLLDKALNLLLELEKDGFEPGP-ATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPF 502
           K    + A  L+ +  + G      +   ++++  G+++L  +AE L+  + +       
Sbjct: 722 KLGFPETAHRLMDDALQSGIPLNILSCRVIIIEAYGKIKLWQQAEILVKGLRQ-ASGIDR 780

Query: 503 KIQVSLCDMYARAGIEKKA 521
           +I  +L   YA +G+ +KA
Sbjct: 781 RIWNALIHAYAESGLYEKA 799



 Score = 40.0 bits (92), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 67/172 (38%), Gaps = 21/172 (12%)

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDK--ALN 453
           T++    ++  Y ++G  D AR   D M   G  PD     ++I A  K   L    AL+
Sbjct: 220 TVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVALD 279

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
           LL E+ + G  P   TY  L+    +   + +A  +   +      P      ++  ++ 
Sbjct: 280 LLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHG 339

Query: 514 RAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEA 565
           R G  ++A                   ER+   L+  GF+ DA   + L+ A
Sbjct: 340 RCGKAEEA-------------------ERLFRELVEKGFMPDAITYNSLLYA 372


>gi|5738362|emb|CAB52870.1| putative protein [Arabidopsis thaliana]
 gi|7268785|emb|CAB78991.1| putative protein [Arabidopsis thaliana]
          Length = 1302

 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 146/314 (46%), Gaps = 1/314 (0%)

Query: 219  QPSRIDWINLLDRLREQN-TQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
            +P+      L+D L ++  T+  F++   ++  ++++ NV  Y+ +I  + KE+ L  AE
Sbjct: 920  KPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAE 979

Query: 278  RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
             +  +M E G+ P++ T T L++ + KAG+  RA E    +   GF P+   YN+ I + 
Sbjct: 980  MLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSL 1039

Query: 338  VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
                +      L++   + G+E     Y  L++   +  D+  A      M    F+  +
Sbjct: 1040 CKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCRMNKTGFEADM 1099

Query: 398  ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
                +L+ A+ +     ++   F  ++ LG  P      SMI+ Y K+  +D AL     
Sbjct: 1100 RLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTSMISCYCKEGDIDLALKYFHN 1159

Query: 458  LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI 517
            +++ G  P   TY  L+  L +  +++EA +L   + + G +PP   +V+L   Y +   
Sbjct: 1160 MKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPPEVTRVTLAYEYCKRND 1219

Query: 518  EKKALQALGFLEAK 531
               A+  L  L+ K
Sbjct: 1220 SANAMILLEPLDKK 1233



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 132/321 (41%), Gaps = 20/321 (6%)

Query: 251  ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
            E F+  +R Y    D+      L+ A  +++ M  N               +S+ G L+ 
Sbjct: 722  EKFRHFMRLYLVTADSLLANGNLQKAHEVMRCMLRN---------------FSEIGRLNE 766

Query: 311  AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
            A      +++ G  P     N ++   V  G  +   ++ D M   G+      Y  ++ 
Sbjct: 767  AVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVPDSSSYKLMVI 826

Query: 371  SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
               + G ++ A +    M    F P   +CTL++ A  + G  ++A   F  MI LG KP
Sbjct: 827  GCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMIDLGFKP 886

Query: 431  DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
            +     S+I    KK  + +A  +L E+ ++G++P   T+T L+D L +     +A +L 
Sbjct: 887  NLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLF 946

Query: 491  GKISELGEAPP-FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP--DDFERIINGL 547
             K+       P      S+   Y +     +A   + F   K++ + P  + +  +ING 
Sbjct: 947  LKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRA--EMLFSRMKEQGLFPNVNTYTTLINGH 1004

Query: 548  LAGGFLQDAQRVHGLMEAQGF 568
               G    A  +  LM  +GF
Sbjct: 1005 CKAGSFGRAYELMNLMGDEGF 1025


>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
 gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
          Length = 924

 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 137/321 (42%), Gaps = 4/321 (1%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           +  + N   Y+ LI  + +E     A   LKKM    + PD+     L+   S  G +D 
Sbjct: 482 DGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDE 541

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A E ++ +   GFQP+   Y  +I  Y  AG  +    L+  M+ SG+  ++ IY  +L 
Sbjct: 542 AIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILE 601

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
            + +  ++         M  +   P      +++     +G    A S    + + G  P
Sbjct: 602 GYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVP 661

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           D     S+I+ + K   ++KA+ LL E+ K G EPG + Y  L+D   +   I+ A  + 
Sbjct: 662 DSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIF 721

Query: 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF--ERIINGLL 548
             I   G  P      +L D Y +AG  + A+    + E   E + PD F    +  G  
Sbjct: 722 NSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDL--YNEMLTEGVAPDAFVYSVLAAGCS 779

Query: 549 AGGFLQDAQRVHGLMEAQGFA 569
             G LQ A  +   M A+G+A
Sbjct: 780 NSGDLQQALFITEEMIARGYA 800



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 147/326 (45%), Gaps = 4/326 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  YS LI+A+ K   LE A++++++M E G   ++VT   L+    +AG ++ A    
Sbjct: 242 DVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEAFGYK 301

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + +  +G  PD   Y ++I      G+P     L+D M  +G+  +  +Y  L+  F + 
Sbjct: 302 KEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMRQ 361

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G+   A +I   M     QP   +   L+    + G   +A      M ++G+  D    
Sbjct: 362 GNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTY 421

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +I  + +++  ++A  LL E+ K G  P   TY+++++ L ++     A  LL ++  
Sbjct: 422 NLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIA 481

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFL 553
            G  P   +   L   Y R G    A + L   +  +E + PD   +  +I GL   G +
Sbjct: 482 DGLKPNAFVYAPLISGYCREGSFSLACETLK--KMTRENLTPDLYCYNSLIIGLSNVGKM 539

Query: 554 QDAQRVHGLMEAQGFAASERLKVALI 579
            +A   +  M  +GF  ++     LI
Sbjct: 540 DEAIEYYDEMLEKGFQPNDFTYGGLI 565



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 143/336 (42%), Gaps = 6/336 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +S      NV  YS LID   ++   ++A +I+K+M+  G+ P+ +T   L+    K G 
Sbjct: 339 MSCAGLMPNVVVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGR 398

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           + RA    + +   G+  D   YN +I  ++     +    L++ M   GI  +   Y  
Sbjct: 399 MGRASRILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSI 458

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++    Q G+   A  +   M  +  +P       L+  Y + G    A      M R  
Sbjct: 459 IINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTREN 518

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD  C  S+I        +D+A+    E+ + GF+P   TY  L+        + +AE
Sbjct: 519 LTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAE 578

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARA-GIEKKALQALGFLEAKKEQMGPDD--FERII 544
           QLL ++   G  P   I   + + Y ++  +EK +      LE   + + PD+  +  +I
Sbjct: 579 QLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLE---KGLMPDNRLYGIVI 635

Query: 545 NGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
           + L + G +Q A  V  ++E  G      +  +LIS
Sbjct: 636 HNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLIS 671



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/362 (21%), Positives = 156/362 (43%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           +QP++I + NL+  L +             +++  +  +   Y+ +I+ H +++  E+A 
Sbjct: 379 VQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAF 438

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
            +L +M + GI P++ T +++++   + G  +RA    E + + G +P+  VY  +I  Y
Sbjct: 439 LLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLISGY 498

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
              G   L    +  M    +      Y +L+   +  G +  A +  + M  + FQP  
Sbjct: 499 CREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPND 558

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
            +   L+  Y  AG+ ++A      M+  G  P+D   A ++  Y K + L+K  + L  
Sbjct: 559 FTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKS 618

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI 517
           + + G  P    Y +++  L     +  A  +L  I + G  P   I  SL   + +A  
Sbjct: 619 MLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAAD 678

Query: 518 EKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVA 577
            +KA+  L  +  K  + G   +  +I+G      +  A+ +   +  +G   +      
Sbjct: 679 MEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTT 738

Query: 578 LI 579
           LI
Sbjct: 739 LI 740



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 110/224 (49%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E+ FQ N   Y  LI  ++    LE AE++L +M  +G+ P+      ++  Y K+ NL+
Sbjct: 551 EKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLE 610

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
           +     +S+   G  PD ++Y  +I    ++G  +  +S++ ++  +G+     IY +L+
Sbjct: 611 KVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLI 670

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
             F +  D+  A  + + M  +  +P +     L++ + ++ D   AR+ F+ +I  G  
Sbjct: 671 SGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIICKGLP 730

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVL 473
           P+     ++I  Y K   +  A++L  E+  +G  P    Y+VL
Sbjct: 731 PNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVL 774



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 100/227 (44%), Gaps = 22/227 (9%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           ++++  +  +  Y+ LID   K + +  A  I   +   G+ P+ VT T L+  Y KAG+
Sbjct: 689 MAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGD 748

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A + +  + + G  PD  VY+ +     N+G  +  + + + MI  G       +  
Sbjct: 749 IRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQALFITEEMIARGYAIISS-FNT 807

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR---------- 417
           L+  F + G ++   +  ++M  ++  P+L +   +V   G+AG   +A           
Sbjct: 808 LVHGFCKRGKLQETVKFLHVMMDKDIVPSLLTVENIVIGLGEAGKLSEAHTIFVELQQKN 867

Query: 418 ----------SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
                     S F  MI  G  P D    +MI ++ K+  LDKAL L
Sbjct: 868 ASHRDTDHLSSLFTDMINQGLVPLD-VIHNMIQSHCKQGYLDKALML 913



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 71/328 (21%), Positives = 126/328 (38%), Gaps = 45/328 (13%)

Query: 293 VTSTVLVHMYSKAGNLDRAKEAF---------ESLRS----------------------- 320
           V   VLV  Y K G +    E            SLR                        
Sbjct: 174 VVLDVLVDTYKKTGRVRDGAEVVLLMKDLGLAPSLRCCNGLLKDLLRADALDLLWKVRGF 233

Query: 321 ---HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
               G  PD   Y+++I AY      +    +V+ M  +G   +   Y  L+    + G 
Sbjct: 234 MEGAGISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGA 293

Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
           +  A      M      P   +   ++    + G PDQA+   D M   G  P+    ++
Sbjct: 294 IEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYST 353

Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           +I  + ++   D+A  ++ E+   G +P   TY  L+  L +L  +  A ++L +++++G
Sbjct: 354 LIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIG 413

Query: 498 EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQD 555
                     + + + R   +++A   L   E +K  + P+   +  IINGL   G   +
Sbjct: 414 YMADTMTYNLVIEGHLRQHNKEEAFLLLN--EMRKGGISPNVYTYSIIINGLCQIG---E 468

Query: 556 AQRVHGLME---AQGFAASERLKVALIS 580
           ++R  GL+E   A G   +  +   LIS
Sbjct: 469 SERASGLLEQMIADGLKPNAFVYAPLIS 496


>gi|255574927|ref|XP_002528370.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532238|gb|EEF34042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 712

 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 147/319 (46%), Gaps = 5/319 (1%)

Query: 214 WKELLQPSRIDWINLLDRLREQN-TQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC 272
           WK    P+      L+D L ++  T+  F++   ++  ++++ NV  Y+ +I+ + KE  
Sbjct: 329 WK----PNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVYTYTCMINGYCKEEK 384

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           L  AE +L +M E G+VP+  T T L+  + KAGN  RA E  + +   GF P+   YN+
Sbjct: 385 LNRAEMLLIRMKEQGLVPNTNTYTCLIDGHCKAGNFGRAYELMDLMGKEGFTPNIFTYNA 444

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I      G+      L+   + SG+   +  Y  L+  F +  D + A  I + M    
Sbjct: 445 IIDGLCKKGRFPEAYKLLRRGLKSGLHADKVTYTILISEFCRQTDNKQALAIFSRMFKVG 504

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
            QP + +  +L+  + +    +++   F+  + LG  P      SMI  Y +   +  A+
Sbjct: 505 LQPDMHTYNVLIATFCRQKKVEESEKLFEEAVGLGLLPTKETYTSMICGYCRDGHISSAI 564

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
               ++   G +P   TY  L+  L     ++EA QL   + + G +P    +V+L   Y
Sbjct: 565 KFFHKMRDYGCKPDSITYGALISGLCNESKLDEACQLYETMIDNGLSPCEVTRVTLAYEY 624

Query: 513 ARAGIEKKALQALGFLEAK 531
            + G    A+  L  LE K
Sbjct: 625 CKQGDSATAMIILERLEKK 643



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 91/390 (23%), Positives = 167/390 (42%), Gaps = 17/390 (4%)

Query: 208 SPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAH 267
           + L  E   ++  S  +W+    + R    +LY   A   L+ ++          ++ + 
Sbjct: 110 ASLAQEAGSVVSLSFFNWVIGFSKFR-HFMRLYIVCATTFLNNDNLDRATEVMQCMVRSF 168

Query: 268 AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK 327
           ++   L++A  ++ +M  +G+V        ++ +    G +D A++ F+ +      PD 
Sbjct: 169 SEIGKLKEAVNMVIEMQNHGLVLKARILNFVIDVALALGFVDYAEKVFDEMLDRAVVPDS 228

Query: 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA----LLRSFAQCGDVRGAGQ 383
             Y  M++ Y   G+    +S VD  +   IER   +  A    ++ +F++ G V  A  
Sbjct: 229 TSYKLMVVGYCRMGR----ISDVDRWLKDMIERGYAVDNATCTLMISTFSEKGFVNRAFW 284

Query: 384 ITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYG 443
                      P L + + L+    + G   QA    + M+R G KP+     ++I    
Sbjct: 285 YFKKWVQMGLNPNLINFSSLINGLCKIGSIKQAFEMLEEMVRKGWKPNVYTHTALIDGLC 344

Query: 444 KKNLLDKALNLLLELEK-DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPF 502
           KK   +KA  L L+L + D ++P   TYT +++   + + +N AE LL ++ E G  P  
Sbjct: 345 KKGWTEKAFRLFLKLVRSDNYKPNVYTYTCMINGYCKEEKLNRAEMLLIRMKEQGLVPNT 404

Query: 503 KIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF--ERIINGLLAGGFLQDAQRVH 560
                L D + +AG   +A + +  +   KE   P+ F    II+GL   G   +A ++ 
Sbjct: 405 NTYTCLIDGHCKAGNFGRAYELMDLM--GKEGFTPNIFTYNAIIDGLCKKGRFPEAYKLL 462

Query: 561 GLMEAQGFAASERLKVALISS---QTFNRQ 587
                 G  A +     LIS    QT N+Q
Sbjct: 463 RRGLKSGLHADKVTYTILISEFCRQTDNKQ 492


>gi|15237575|ref|NP_198933.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75309191|sp|Q9FLL3.1|PP412_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g41170, mitochondrial; Flags: Precursor
 gi|9759163|dbj|BAB09719.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|66792708|gb|AAY56456.1| At5g41170 [Arabidopsis thaliana]
 gi|332007267|gb|AED94650.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 527

 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 157/339 (46%), Gaps = 8/339 (2%)

Query: 227 NLLDRLREQNTQLYFKVAEL-VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNE 285
           NLL     Q++Q Y   + L  + +  F+ ++  ++ LI+     N +E+A  ++ +M E
Sbjct: 111 NLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVE 170

Query: 286 NGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKL 345
            GI PD+V  T ++    K G+++ A   F+ + ++G +PD  +Y S++    N+G+ + 
Sbjct: 171 MGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRD 230

Query: 346 GMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVE 405
             SL+  M    I+     + AL+ +F + G    A ++ N M      P + + T L+ 
Sbjct: 231 ADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLIN 290

Query: 406 AYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
            +   G  D+AR  F  M   G  PD     S+I  + K   +D A+ +  E+ + G   
Sbjct: 291 GFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTG 350

Query: 466 GPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
              TYT L+   G++   N A+++   +   G  P  +    L       G  KKAL   
Sbjct: 351 NTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMI- 409

Query: 526 GFLEAKKEQM---GPD--DFERIINGLLAGGFLQDAQRV 559
            F + +K +M    P+   +  +++GL   G L+ A  V
Sbjct: 410 -FEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMV 447



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 105/249 (42%), Gaps = 3/249 (1%)

Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311
           S   N+  Y+ LI+    E C+++A ++   M   G  PD+V  T L++ + K   +D A
Sbjct: 277 SIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDA 336

Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
            + F  +   G   +   Y ++I  +   G+P +   +   M++ G+  +   Y  LL  
Sbjct: 337 MKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHC 396

Query: 372 FAQCGDVRGAGQITNIMRIEEFQ---PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH 428
               G V+ A  I   M+  E     P + +  +L+      G  ++A   F+ M +   
Sbjct: 397 LCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREM 456

Query: 429 KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQ 488
                    +I    K   +  A+NL   L   G +P   TYT ++  L R  L +EA  
Sbjct: 457 DIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHV 516

Query: 489 LLGKISELG 497
           L  K+ E G
Sbjct: 517 LFRKMKEDG 525



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/319 (21%), Positives = 126/319 (39%), Gaps = 2/319 (0%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
             +A  +   M E+  +P I+  T L+++ +K    D      + L+  G   D    N 
Sbjct: 53  FNEALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNL 112

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           ++  +  + QP L  S +  M+  G E     + +L+  F     +  A  + N M    
Sbjct: 113 LMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMG 172

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
            +P +   T ++++  + G  + A S FD M   G +PD     S++           A 
Sbjct: 173 IKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDAD 232

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
           +LL  + K   +P   T+  L+D   +     +AE+L  ++  +  AP      SL + +
Sbjct: 233 SLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGF 292

Query: 513 ARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572
              G   +A Q    +E K        +  +ING      + DA ++   M  +G   + 
Sbjct: 293 CMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNT 352

Query: 573 RLKVALISSQTFNRQRQPT 591
                LI  Q F +  +P 
Sbjct: 353 ITYTTLI--QGFGQVGKPN 369



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 70/330 (21%), Positives = 133/330 (40%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           ++ D++KL++  AK    +    +   +   G+  D+ T  +L++ + ++     A    
Sbjct: 71  SIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNLLMNCFCQSSQPYLASSFL 130

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   GF+PD   + S+I  +    + +  MS+V+ M+  GI+    +Y  ++ S  + 
Sbjct: 131 GKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKN 190

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G V  A  + + M     +P +   T LV     +G    A S    M +   KPD    
Sbjct: 191 GHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITF 250

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I A+ K+     A  L  E+ +    P   TYT L++       ++EA Q+   +  
Sbjct: 251 NALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMET 310

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
            G  P      SL + + +      A++    +  K        +  +I G    G    
Sbjct: 311 KGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNV 370

Query: 556 AQRVHGLMEAQGFAASERLKVALISSQTFN 585
           AQ V   M ++G   + R    L+    +N
Sbjct: 371 AQEVFSHMVSRGVPPNIRTYNVLLHCLCYN 400


>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Brachypodium distachyon]
          Length = 718

 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 147/315 (46%), Gaps = 4/315 (1%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           V+ E   + ++  ++ +++   K   +EDA ++  +M   G+ PD V+   LV  Y KAG
Sbjct: 215 VMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAG 274

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            L  A   F  +   G  PD   + S+I A   AG  +  ++LV  M   G+  +E  + 
Sbjct: 275 CLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFT 334

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           AL+  F + G +  A      MR    QP++    +L+  Y + G  D+AR     M   
Sbjct: 335 ALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAK 394

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G KPD    +++++ Y K    D A  L  ++ K G  P   TY+ L+  L   + + +A
Sbjct: 395 GMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDA 454

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERII 544
            +L  K+ +LG  P      +L D + + G  +KAL      E  K+ + PD   +  +I
Sbjct: 455 CELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHD--EMIKKGVLPDVVTYSVLI 512

Query: 545 NGLLAGGFLQDAQRV 559
           +GL      ++AQR+
Sbjct: 513 DGLSKSARTKEAQRL 527



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 87/382 (22%), Positives = 156/382 (40%), Gaps = 50/382 (13%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           ++ E    +   Y+ L+  + K  CL +A  +  +M + G+VPD+VT T L+H   +AGN
Sbjct: 251 MAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGN 310

Query: 308 LDRAKEAFESLRSHGF-----------------------------------QPDKKVYNS 332
           L+RA      +R  G                                    QP    YN 
Sbjct: 311 LERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNV 370

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I  Y   G+      L+  M   G++     Y  +L  + + GD   A ++   M  + 
Sbjct: 371 LINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKG 430

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P   + + L+    +      A   F+ M++LG +PD+    ++I  + K+  + KAL
Sbjct: 431 VVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKAL 490

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP----------- 501
           +L  E+ K G  P   TY+VL+D L +     EA++LL K+      P            
Sbjct: 491 SLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKLYYEDPVPDNIKYEALMHCC 550

Query: 502 ----FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQ 557
               FK  V+L   ++  G+  +A +    +  +  ++    +  +I+G   GG +  A 
Sbjct: 551 RTAEFKSVVALLKGFSMKGLMNQADKVYQSMLDRHWKLDGSVYSVLIHGHCRGGNIMKAL 610

Query: 558 RVHGLMEAQGFAASERLKVALI 579
             H  +   GF+ +    ++L+
Sbjct: 611 SFHKQLLRCGFSPNSTSTISLV 632



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 123/296 (41%), Gaps = 36/296 (12%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF-ESLRSHGFQPDKKVYN 331
           L  A R+L  M  +G+ P++ T  +LV      G  + A     + +R  G  P+   YN
Sbjct: 135 LPSARRLLASMLRDGVAPNVYTYNILVRALCARGQREEALGVVGDDMRGAGCAPNVVTYN 194

Query: 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391
           +++ A+  AG+                                   V  A ++  +MR  
Sbjct: 195 TLVAAFCRAGE-----------------------------------VDAAERLVGVMREG 219

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
             +P+L +   +V    +AG  + AR  FD M R G  PD     ++++ Y K   L +A
Sbjct: 220 GVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEA 279

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
           L +  E+ + G  P   T+T L+  + R   +  A  L+G++ E G         +L D 
Sbjct: 280 LAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDG 339

Query: 512 YARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
           + R G    AL A+  +   + Q     +  +ING    G + +A+ +   MEA+G
Sbjct: 340 FCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKG 395



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/269 (22%), Positives = 119/269 (44%), Gaps = 1/269 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERIL-KKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA 314
           NV  Y+ L+ A       E+A  ++   M   G  P++VT   LV  + +AG +D A+  
Sbjct: 153 NVYTYNILVRALCARGQREEALGVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERL 212

Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
              +R  G +P    +N+++     AG+ +    + D M   G+      Y  L+  + +
Sbjct: 213 VGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCK 272

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
            G +  A  +   M  +   P + + T L+ A  +AG+ ++A +    M   G + ++  
Sbjct: 273 AGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFT 332

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
             ++I  + +   LD AL  + E+ +   +P    Y VL++   +L  ++EA +L+ ++ 
Sbjct: 333 FTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEME 392

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
             G  P      ++   Y + G    A +
Sbjct: 393 AKGMKPDVVTYSTILSGYCKIGDTDSAFE 421



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/320 (21%), Positives = 135/320 (42%), Gaps = 17/320 (5%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  YS ++  + K    + A  + +KM + G+VPD +T + L+    +   L  A E F
Sbjct: 399 DVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELF 458

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E +   G QPD+  Y ++I  +   G  +  +SL D MI  G+      Y  L+   ++ 
Sbjct: 459 EKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKS 518

Query: 376 GDVRGAGQITNIMRIEE-------FQPTLESC--------TLLVEAYGQAGDPDQARSNF 420
              + A ++   +  E+       ++  +  C          L++ +   G  +QA   +
Sbjct: 519 ARTKEAQRLLFKLYYEDPVPDNIKYEALMHCCRTAEFKSVVALLKGFSMKGLMNQADKVY 578

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
             M+    K D    + +I  + +   + KAL+   +L + GF P   +   LV  L   
Sbjct: 579 QSMLDRHWKLDGSVYSVLIHGHCRGGNIMKALSFHKQLLRCGFSPNSTSTISLVRGLFEE 638

Query: 481 QLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF 540
            +  EA+ ++ ++         +   +L D+  + G+     QA G L  +K  +  + +
Sbjct: 639 GMTVEADNVIQELLNCCSLADAETSKALIDLNRKEGV--GYFQAQGELCMQKPALFVEHW 696

Query: 541 ERIINGLLAGGFLQDAQRVH 560
             +++ +L G F+      H
Sbjct: 697 NCMMSIVLFGAFIGSCLAEH 716


>gi|168002263|ref|XP_001753833.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694809|gb|EDQ81155.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 779

 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 123/266 (46%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ LI+A+ +      A ++ K+M E G  PD+VT + L+  Y K G  D  +  F
Sbjct: 249 DVVAYNILIEAYGRAGKYRAAAKMFKQMQEAGCTPDVVTFSTLLEAYGKHGCYDEVRLLF 308

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             ++  G +PD   YN++I  +   G  +  ++L   ++  G+E     Y  LL S  + 
Sbjct: 309 TDMKERGTEPDVNTYNTLIQVFGQGGFFQESINLFWDLLDGGVEPDMSTYAGLLYSCGKG 368

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G  + A +I   M      PT +  T L+ AYG A    +A   F+ M   G KPD    
Sbjct: 369 GLHKAAKKIHRHMLQSYVTPTTDGFTGLITAYGNAALYSEATYAFNSMKESGCKPDLETY 428

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I A+    L  +A +  L +  +G     +TY  L++  GR  L ++A +    + E
Sbjct: 429 NALIGAHAGGGLYCEAGSAYLTMIDEGISADVSTYNSLIEAFGRGGLFDDAIEFSRDMEE 488

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKA 521
              +P      +L  +Y  AG+  +A
Sbjct: 489 ARCSPNRHTYEALMGVYCTAGLFDEA 514



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 146/342 (42%), Gaps = 7/342 (2%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENC-LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           +  E    N+  Y+ +I+A AK     E    +  +M   GI PDI+T   L+   S  G
Sbjct: 135 MKREKVTPNLITYNTVINACAKGGLEWEGLLGLFAQMRHEGIQPDIITYNTLLSACSSRG 194

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            ++ A   F ++   G  PD   YN+++  Y  A + +    L+  M  +G       Y 
Sbjct: 195 LVEEAGMVFRTMNEAGVVPDSITYNALVDIYGQADRHEGVGELLREMEQAGNAPDVVAYN 254

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+ ++ + G  R A ++   M+     P + + + L+EAYG+ G  D+ R  F  M   
Sbjct: 255 ILIEAYGRAGKYRAAAKMFKQMQEAGCTPDVVTFSTLLEAYGKHGCYDEVRLLFTDMKER 314

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G +PD     ++I  +G+     +++NL  +L   G EP  +TY  L+   G+  L   A
Sbjct: 315 GTEPDVNTYNTLIQVFGQGGFFQESINLFWDLLDGGVEPDMSTYAGLLYSCGKGGLHKAA 374

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERII 544
           +++   + +    P       L   Y  A +  +A  A  F   K+    PD   +  +I
Sbjct: 375 KKIHRHMLQSYVTPTTDGFTGLITAYGNAALYSEATYA--FNSMKESGCKPDLETYNALI 432

Query: 545 NGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNR 586
                GG   +A   +  M  +G +A      +LI  + F R
Sbjct: 433 GAHAGGGLYCEAGSAYLTMIDEGISADVSTYNSLI--EAFGR 472



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 109/267 (40%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E     +V  +S L++A+ K  C ++   +   M E G  PD+ T   L+ ++ + G 
Sbjct: 276 MQEAGCTPDVVTFSTLLEAYGKHGCYDEVRLLFTDMKERGTEPDVNTYNTLIQVFGQGGF 335

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
              +   F  L   G +PD   Y  ++ +    G  K    +   M+ S +  + + +  
Sbjct: 336 FQESINLFWDLLDGGVEPDMSTYAGLLYSCGKGGLHKAAKKIHRHMLQSYVTPTTDGFTG 395

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+ ++        A    N M+    +P LE+   L+ A+   G   +A S +  MI  G
Sbjct: 396 LITAYGNAALYSEATYAFNSMKESGCKPDLETYNALIGAHAGGGLYCEAGSAYLTMIDEG 455

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
              D     S+I A+G+  L D A+    ++E+    P   TY  L+       L +EA+
Sbjct: 456 ISADVSTYNSLIEAFGRGGLFDDAIEFSRDMEEARCSPNRHTYEALMGVYCTAGLFDEAK 515

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYAR 514
                +   GE P       L  + AR
Sbjct: 516 AQFLDLQVGGELPSVDSYCLLLSVCAR 542



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 133/305 (43%), Gaps = 6/305 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIV-PDIVTSTVLVHMYSKAGNLDRAKEA 314
            + D+S +    A+ +  + A R+ K M  +    P+    T+++ +  + G LD+A E 
Sbjct: 37  TINDFSLIFREFAQRSDWQKALRLFKYMQRHQWCKPNEHVYTIMIGIMGREGMLDKASEL 96

Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
           FE +  +  + +   + ++I AY   GQ +  + L+  M    +  +   Y  ++ + A+
Sbjct: 97  FEDMPLNDVEWNVYSFTALINAYGRNGQHEASLHLLARMKREKVTPNLITYNTVINACAK 156

Query: 375 CG-DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
            G +  G   +   MR E  QP + +   L+ A    G  ++A   F  M   G  PD  
Sbjct: 157 GGLEWEGLLGLFAQMRHEGIQPDIITYNTLLSACSSRGLVEEAGMVFRTMNEAGVVPDSI 216

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
              +++  YG+ +  +    LL E+E+ G  P    Y +L++  GR      A ++  ++
Sbjct: 217 TYNALVDIYGQADRHEGVGELLREMEQAGNAPDVVAYNILIEAYGRAGKYRAAAKMFKQM 276

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGG 551
            E G  P      +L + Y + G   +    L F + K+    PD   +  +I     GG
Sbjct: 277 QEAGCTPDVVTFSTLLEAYGKHGCYDEV--RLLFTDMKERGTEPDVNTYNTLIQVFGQGG 334

Query: 552 FLQDA 556
           F Q++
Sbjct: 335 FFQES 339



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 86/203 (42%), Gaps = 8/203 (3%)

Query: 382 GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH---KPDDRCTASM 438
           G I   M     + T+   +L+   + Q  D  +A   F YM R  H   KP++     M
Sbjct: 23  GSIAKTMEGYRNKLTINDFSLIFREFAQRSDWQKALRLFKYMQR--HQWCKPNEHVYTIM 80

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           I   G++ +LDKA  L  ++  +  E    ++T L++  GR      +  LL ++     
Sbjct: 81  IGIMGREGMLDKASELFEDMPLNDVEWNVYSFTALINAYGRNGQHEASLHLLARMKREKV 140

Query: 499 APPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDA 556
            P      ++ +  A+ G+E + L  L F + + E + PD   +  +++   + G +++A
Sbjct: 141 TPNLITYNTVINACAKGGLEWEGLLGL-FAQMRHEGIQPDIITYNTLLSACSSRGLVEEA 199

Query: 557 QRVHGLMEAQGFAASERLKVALI 579
             V   M   G         AL+
Sbjct: 200 GMVFRTMNEAGVVPDSITYNALV 222


>gi|242095042|ref|XP_002438011.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
 gi|241916234|gb|EER89378.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
          Length = 1443

 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 128/274 (46%), Gaps = 2/274 (0%)

Query: 218 LQPSRIDWINLLDRLREQ-NTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L+P  I +  L+    +  N +    V E +++ E  + ++  Y+ ++  H +    E+A
Sbjct: 289 LRPDVITYNTLISACSQSSNLEDAVTVFEEMIASEC-RPDLWTYNAMVSVHGRCGKAEEA 347

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
           ER+  ++ E G +PD VT   L++ ++K GN+D+ +   E L   GF+ ++  YN+MI  
Sbjct: 348 ERLFGELVEKGFMPDAVTYNSLLYAFAKEGNVDKVEHTCEELVKAGFKKNEITYNTMIHM 407

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           Y   G+  L + L D M   G       Y  ++ S  +   +  AG++   M     +PT
Sbjct: 408 YGKMGRLDLAVGLYDEMRAVGCTPDAVTYTVMIDSLGKMDKIAEAGKVLEDMADAGLKPT 467

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           L + + L+ AY + G    A   FD MI  G KPD      M+  + +    +K L L  
Sbjct: 468 LVAFSALICAYAKGGRRADAEKTFDCMIASGVKPDRLAYLVMLDVFARSGETEKMLRLYR 527

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
            +  D + P    Y VL+  L +     E E+++
Sbjct: 528 TMMNDNYRPDDDMYQVLLVALAKEDKCEEIEEII 561



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 131/264 (49%), Gaps = 2/264 (0%)

Query: 255 TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR--AK 312
             V+ ++ ++  +A+    +DA ++L  M++ GI PD+V+   L++  SK+G L    A 
Sbjct: 219 ATVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVAL 278

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           +    +R  G +PD   YN++I A   +   +  +++ + MI S        Y A++   
Sbjct: 279 DLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEEMIASECRPDLWTYNAMVSVH 338

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            +CG    A ++   +  + F P   +   L+ A+ + G+ D+     + +++ G K ++
Sbjct: 339 GRCGKAEEAERLFGELVEKGFMPDAVTYNSLLYAFAKEGNVDKVEHTCEELVKAGFKKNE 398

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               +MI  YGK   LD A+ L  E+   G  P   TYTV++D LG++  I EA ++L  
Sbjct: 399 ITYNTMIHMYGKMGRLDLAVGLYDEMRAVGCTPDAVTYTVMIDSLGKMDKIAEAGKVLED 458

Query: 493 ISELGEAPPFKIQVSLCDMYARAG 516
           +++ G  P      +L   YA+ G
Sbjct: 459 MADAGLKPTLVAFSALICAYAKGG 482



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/287 (21%), Positives = 124/287 (43%), Gaps = 35/287 (12%)

Query: 253  FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
            +  N+  Y  +       N   D E ++ +M   G  PD+     L++MY+ AGN DR  
Sbjct: 881  YLPNMHLYRSMTSLLCHHNRFRDVELMIAEMEGAGFKPDLSIFNSLLNMYTAAGNFDRTT 940

Query: 313  EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI-------------- 358
            + ++S+   G +PD+  YN++I+ Y  + +P+ G +L++ M   G+              
Sbjct: 941  QVYQSILEAGLEPDEDTYNTLIVMYCRSLRPEEGFTLLNEMGKRGLTPKLQSYKSLLAAS 1000

Query: 359  ---------------------ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
                                 + +  IY  +++ +   G+   A  +  +M+ +  +PT+
Sbjct: 1001 AKAELREQADQLFEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKEDGIEPTI 1060

Query: 398  ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
             +  +L+ +YG AG P +A +  + +     +      +++  AY K    D  +  LLE
Sbjct: 1061 ATMHILMTSYGTAGQPHEAENVLNSLKSSSLEVSTLPYSTVFDAYLKNGDYDLGIKKLLE 1120

Query: 458  LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKI 504
            +++DG EP    +T  +      +   +A  LL  + + G   P ++
Sbjct: 1121 MKRDGVEPDHQVWTCFIRAASLCEQTADAILLLKSLQDCGFDLPIRL 1167



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 69/310 (22%), Positives = 132/310 (42%), Gaps = 9/310 (2%)

Query: 263  LIDAHAKENCLEDAERILKKMNE-NGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSH 321
            +I+A+      + AE ++K + + +GI  D      L+H Y+++G  ++A+  F+++   
Sbjct: 752  IIEAYGNIKLWQQAEILVKGLRQASGI--DRRIWNALIHAYAESGLYEKARAVFDNMIKT 809

Query: 322  GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGA 381
            G  P     N M+ A +  G+      +V  +     + S+   L +L +FA+ GDV   
Sbjct: 810  GPLPTVDSVNGMMRALIVDGRLDELYVVVGELQDMDFKISKSTVLLMLDAFAKAGDVFEV 869

Query: 382  GQITNIMRIEEFQPTLE---SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             +I N M+   + P +    S T L+  + +  D +   +    M   G KPD     S+
Sbjct: 870  MKIYNGMKAAGYLPNMHLYRSMTSLLCHHNRFRDVELMIAE---MEGAGFKPDLSIFNSL 926

Query: 439  IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
            +  Y      D+   +   + + G EP   TY  L+    R     E   LL ++ + G 
Sbjct: 927  LNMYTAAGNFDRTTQVYQSILEAGLEPDEDTYNTLIVMYCRSLRPEEGFTLLNEMGKRGL 986

Query: 499  APPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQR 558
             P  +   SL    A+A + ++A Q    + +K  Q+    +  ++      G    A+ 
Sbjct: 987  TPKLQSYKSLLAASAKAELREQADQLFEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAEN 1046

Query: 559  VHGLMEAQGF 568
            +  +M+  G 
Sbjct: 1047 LLAVMKEDGI 1056



 Score = 46.6 bits (109), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 75/366 (20%), Positives = 161/366 (43%), Gaps = 25/366 (6%)

Query: 218 LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           ++P R+ ++ +LD   R   T+   ++   ++++ +++ +   Y  L+ A AKE+  E+ 
Sbjct: 499 VKPDRLAYLVMLDVFARSGETEKMLRLYRTMMND-NYRPDDDMYQVLLVALAKEDKCEEI 557

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
           E I++ M     +   V ST+L+    KA  + +  +  +     G++PD K   S++ A
Sbjct: 558 EEIIQDMELLCQMSLGVISTILI----KARCVSQGGKLLKKACLQGYKPDAKSLWSIMNA 613

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           YV   + + G+SL++  I   +  S+++        ++C  +    + T+I   E++   
Sbjct: 614 YVMTEKHEEGLSLLE-CIRDHVSSSQDL-------ISECSIILLCRKQTSISAYEQYSQR 665

Query: 397 L------ESCTL---LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447
           L      ++C L   L+    +A    +A   F  M  +G +       S+I+ Y K   
Sbjct: 666 LMLKYPGQNCNLYEHLITCLVEAELFSEACQVFCDMQFIGIEASKNIYESIISTYCKLGF 725

Query: 448 LDKALNLLLELEKDGFEPGP-ATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQV 506
            + A  L+ +  + G      +   ++++  G ++L  +AE L+  + +       +I  
Sbjct: 726 PETAHGLMDDALQSGIPLNILSCRVIIIEAYGNIKLWQQAEILVKGLRQ-ASGIDRRIWN 784

Query: 507 SLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQ 566
           +L   YA +G+ +KA      +         D    ++  L+  G L +   V G ++  
Sbjct: 785 ALIHAYAESGLYEKARAVFDNMIKTGPLPTVDSVNGMMRALIVDGRLDELYVVVGELQDM 844

Query: 567 GFAASE 572
            F  S+
Sbjct: 845 DFKISK 850



 Score = 41.2 bits (95), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 68/172 (39%), Gaps = 21/172 (12%)

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDK--ALN 453
           T++    ++  Y ++G  D AR   D M   G  PD     ++I A  K   L    AL+
Sbjct: 220 TVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVALD 279

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
           LL E+ + G  P   TY  L+    +   + +A  +  ++      P      ++  ++ 
Sbjct: 280 LLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEEMIASECRPDLWTYNAMVSVHG 339

Query: 514 RAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEA 565
           R G  ++A                   ER+   L+  GF+ DA   + L+ A
Sbjct: 340 RCGKAEEA-------------------ERLFGELVEKGFMPDAVTYNSLLYA 372


>gi|357499275|ref|XP_003619926.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494941|gb|AES76144.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 116/246 (47%)

Query: 255 TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA 314
            +V  ++ LID   K   L +A  +  +M   G  P+IVT T L+  Y   GN+D A+E 
Sbjct: 253 VSVYVFTVLIDGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTALMGGYCLKGNVDMAREL 312

Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
           F+++   GF+ D   YN  I  Y   G+ +  + + D M   G+  +   Y +L+    +
Sbjct: 313 FDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCK 372

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
            G+V GA +I   M      P + +C +L++   ++   DQA   F+ ++  G  PD   
Sbjct: 373 AGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTPDVWS 432

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
              +I        + +A+NLL ++      P   TY+ L+D L R   I+ A +LL ++ 
Sbjct: 433 YTILIHGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAWRLLNEMH 492

Query: 495 ELGEAP 500
             G  P
Sbjct: 493 VKGPLP 498



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 105/228 (46%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +  E    N+  Y+ LID   K   +  A  I+K M+ +G+ PDIVT  +L+    K+  
Sbjct: 351 MCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKR 410

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           LD+A   F  L   G  PD   Y  +I     + +    M+L+  M    +      Y  
Sbjct: 411 LDQAILLFNQLVESGLTPDVWSYTILIHGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSC 470

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    + G +  A ++ N M ++   P   + ++L++A  +    D+A   F+ MI+ G
Sbjct: 471 LIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSILLDALWKKQHLDEAVFLFNQMIKRG 530

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
            +PD  C   MI  Y K   +D+A+NL  E+      P   TYT+L +
Sbjct: 531 LEPDVMCYTIMIDGYCKSERIDEAINLFREMHMKNLVPDIVTYTILFN 578



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 112/246 (45%), Gaps = 6/246 (2%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E  F+ +V  Y+  I  + K   + DA R+  +M   G+VP+IVT   L+    KAG 
Sbjct: 316 IGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGE 375

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A E  +++   G  PD      ++     + +    + L + ++ SG+      Y  
Sbjct: 376 VSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTPDVWSYTI 435

Query: 368 LLRSFAQCGDVRGAGQITNIMR---IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
           L+     C   R  G+  N++R   ++   P + + + L++   ++G    A    + M 
Sbjct: 436 LIHG---CCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAWRLLNEMH 492

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
             G  PD    + ++ A  KK  LD+A+ L  ++ K G EP    YT+++D   + + I+
Sbjct: 493 VKGPLPDTITYSILLDALWKKQHLDEAVFLFNQMIKRGLEPDVMCYTIMIDGYCKSERID 552

Query: 485 EAEQLL 490
           EA  L 
Sbjct: 553 EAINLF 558



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 114/255 (44%), Gaps = 4/255 (1%)

Query: 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV 350
           ++V  ++++    + G +D   E +  +  +G  P++  Y S+I      G+   G  LV
Sbjct: 184 NVVMYSIVIDCLCRNGFVDEGFEFYNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLV 243

Query: 351 DMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410
           D MI  G++ S  ++  L+    + G +  A ++ + M    ++P + +CT L+  Y   
Sbjct: 244 DEMIRRGLDVSVYVFTVLIDGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTALMGGYCLK 303

Query: 411 GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATY 470
           G+ D AR  FD +   G K D       I  Y K   +  A+ +  E+ ++G  P   TY
Sbjct: 304 GNVDMARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTY 363

Query: 471 TVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQA-LGFLE 529
             L+D L +   ++ A +++  +   G  P     V+ C +       K+  QA L F +
Sbjct: 364 NSLIDCLCKAGEVSGAWEIVKTMHRSGLTPDI---VTCCILLDGLCKSKRLDQAILLFNQ 420

Query: 530 AKKEQMGPDDFERII 544
             +  + PD +   I
Sbjct: 421 LVESGLTPDVWSYTI 435



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 59/134 (44%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           ++  YS LID   +   + +A R+L +M+  G +PD +T ++L+    K  +LD A   F
Sbjct: 464 HIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSILLDALWKKQHLDEAVFLF 523

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G +PD   Y  MI  Y  + +    ++L   M    +      Y  L  +  + 
Sbjct: 524 NQMIKRGLEPDVMCYTIMIDGYCKSERIDEAINLFREMHMKNLVPDIVTYTILFNAVFKS 583

Query: 376 GDVRGAGQITNIMR 389
           G      +  N++R
Sbjct: 584 GSNSYEWKFVNVIR 597



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 83/212 (39%), Gaps = 17/212 (8%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L E     +V  Y+ LI        + +A  +L+ M+   +VP IVT + L+    ++G 
Sbjct: 421 LVESGLTPDVWSYTILIHGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGR 480

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A      +   G  PD   Y+ ++ A          + L + MI  G+E     Y  
Sbjct: 481 ISNAWRLLNEMHVKGPLPDTITYSILLDALWKKQHLDEAVFLFNQMIKRGLEPDVMCYTI 540

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++  + +   +  A  +   M ++   P + + T+L  A  ++G  +     F  +IR  
Sbjct: 541 MIDGYCKSERIDEAINLFREMHMKNLVPDIVTYTILFNAVFKSGS-NSYEWKFVNVIRDI 599

Query: 428 HKP----------------DDRCTASMIAAYG 443
           + P                D +C AS  A+Y 
Sbjct: 600 NPPPRVLKYLAALCKSEHLDYKCLASEFASYA 631



 Score = 40.0 bits (92), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 4/90 (4%)

Query: 220 PSRIDWINLLDRL--REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           P  I +  LLD L  ++   +  F   +++  +   + +V  Y+ +ID + K   +++A 
Sbjct: 498 PDTITYSILLDALWKKQHLDEAVFLFNQMI--KRGLEPDVMCYTIMIDGYCKSERIDEAI 555

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
            + ++M+   +VPDIVT T+L +   K+G+
Sbjct: 556 NLFREMHMKNLVPDIVTYTILFNAVFKSGS 585


>gi|224069254|ref|XP_002302938.1| predicted protein [Populus trichocarpa]
 gi|222844664|gb|EEE82211.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 135/284 (47%), Gaps = 2/284 (0%)

Query: 218 LQPSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           LQP+ + +  L++   +  N +  F++ ++V+ E     +V  YS LID   KE  LEDA
Sbjct: 263 LQPTAVSFNTLINGYCKSGNLEEGFRL-KMVMEEFRVFPDVFTYSALIDGLCKECQLEDA 321

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
             + K+M + G+VP+ VT T L++   K G +D A E ++ + + G + D  +YN++I  
Sbjct: 322 NHLFKEMCDRGLVPNDVTFTTLINGQCKNGRVDLALEIYQQMFTKGLKADLVLYNTLIDG 381

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
               G  +     V  M   G+   +  Y  LL    + GD+  A ++   M  E  Q  
Sbjct: 382 LCKGGYFREARKFVGEMTKRGLIPDKFTYTTLLDGSCKEGDLELALEMRKEMVKEGIQLD 441

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
             + T ++    + G    A      M+R G KPDD     ++  + KK  +     LL 
Sbjct: 442 NVAFTAIISGLCRDGKIVDAERTLREMLRAGLKPDDGTYTMVMDGFCKKGDVKMGFKLLK 501

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
           E++ DG  PG  TY VL++ L +   +  A+ LL  +  LG  P
Sbjct: 502 EMQSDGHIPGVITYNVLMNGLCKQGQVKNADMLLNAMLNLGVVP 545



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 94/415 (22%), Positives = 172/415 (41%), Gaps = 22/415 (5%)

Query: 186 PITGKCKLITDKILSLEKEEDPSPLLAEWKELLQ---PSRIDWIN-LLDRLREQNTQLYF 241
           P  G CK + ++++   K   P   L  + E+L    P  +   N L++RL ++      
Sbjct: 196 PFNG-CKCLLERMI---KMSSPMVALEFYLEILDSGYPPNVYTFNVLMNRLCKEGK---V 248

Query: 242 KVAELVLSE---ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVL 298
           K A+L+  E      Q     ++ LI+ + K   LE+  R+   M E  + PD+ T + L
Sbjct: 249 KDAQLIFDEIRKTGLQPTAVSFNTLINGYCKSGNLEEGFRLKMVMEEFRVFPDVFTYSAL 308

Query: 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
           +    K   L+ A   F+ +   G  P+   + ++I      G+  L + +   M T G+
Sbjct: 309 IDGLCKECQLEDANHLFKEMCDRGLVPNDVTFTTLINGQCKNGRVDLALEIYQQMFTKGL 368

Query: 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418
           +    +Y  L+    + G  R A +    M      P   + T L++   + GD + A  
Sbjct: 369 KADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPDKFTYTTLLDGSCKEGDLELALE 428

Query: 419 NFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLG 478
               M++ G + D+    ++I+   +   +  A   L E+ + G +P   TYT+++D   
Sbjct: 429 MRKEMVKEGIQLDNVAFTAIISGLCRDGKIVDAERTLREMLRAGLKPDDGTYTMVMDGFC 488

Query: 479 RLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG-- 536
           +   +    +LL ++   G  P       L +   + G  K A   L  +      +G  
Sbjct: 489 KKGDVKMGFKLLKEMQSDGHIPGVITYNVLMNGLCKQGQVKNADMLLNAM----LNLGVV 544

Query: 537 PDD--FERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQ 589
           PDD  +  ++ G    G L D Q V   M      AS R  +  +S  + +RQ++
Sbjct: 545 PDDITYNILLQGHCKHGKLGDFQNVKTEMGLVSDYASYRSLLHELSKASKDRQKR 599


>gi|225437600|ref|XP_002271180.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic [Vitis vinifera]
          Length = 867

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 162/334 (48%), Gaps = 8/334 (2%)

Query: 226 INLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNE 285
           I++L RL +   +L   V E  L+E  +   V  +S LI A+ +    ++A ++ + M  
Sbjct: 192 ISILGRLGQ--VELAKNVFETALNE-GYGNTVYAFSALISAYGRSGYCDEAIKVFETMKS 248

Query: 286 NGIVPDIVTSTVLVHMYSKAG-NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPK 344
           +G+ P++VT   ++    K G + +RA E F+ +  +G QPD+  +NS++      G  +
Sbjct: 249 SGLKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMLRNGVQPDRITFNSLLAVCGRGGLWE 308

Query: 345 LGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
              +L   M+  GIE+    Y  LL +  + G +  A QI + M  +   P + + + ++
Sbjct: 309 AARNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVI 368

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
           + Y +AG  D+A + F+ M       D     ++++ Y K    ++ALN+  E+E  G +
Sbjct: 369 DGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIK 428

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQA 524
               TY  L+   G+     E +++  ++      P      +L D+Y++ G+ ++A++ 
Sbjct: 429 KDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEV 488

Query: 525 LGFLEAKKEQMGPDD--FERIINGLLAGGFLQDA 556
             F E KK  +  D   +  +I+ L   G ++ A
Sbjct: 489 --FREFKKAGLKADVVLYSALIDALCKNGLVESA 520



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 140/293 (47%), Gaps = 17/293 (5%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSE---ESFQTNVRDYSKLIDAHAKENCLE 274
           +QP RI + +LL           ++ A  + SE      + ++  Y+ L+DA  K   ++
Sbjct: 287 VQPDRITFNSLLAVCGRGG---LWEAARNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMD 343

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
            A +I+ +M    I+P++VT + ++  Y+KAG LD A   F  ++      D+  YN+++
Sbjct: 344 LAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLL 403

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
             Y   G+ +  +++   M +SGI++    Y ALL  + + G      ++   M+ E   
Sbjct: 404 SIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIF 463

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P L + + L++ Y + G   +A   F    + G K D    +++I A  K  L++ A++ 
Sbjct: 464 PNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSF 523

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVS 507
           L E+ K+G  P   TY  ++D  GR      AE ++         PP++  VS
Sbjct: 524 LDEMTKEGIRPNVVTYNSIIDAFGR---SGSAECVID--------PPYETNVS 565



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 67/304 (22%), Positives = 127/304 (41%), Gaps = 5/304 (1%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENC-LEDAERILKKMNENGIVPDIVTSTVLVHMYSKA 305
            +     + N+  Y+ +IDA  K       A  I  +M  NG+ PD +T   L+ +  + 
Sbjct: 245 TMKSSGLKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMLRNGVQPDRITFNSLLAVCGRG 304

Query: 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
           G  + A+  F  +   G + D   YN+++ A    GQ  L   ++  M    I  +   Y
Sbjct: 305 GLWEAARNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTY 364

Query: 366 LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
             ++  +A+ G +  A  + N M+         S   L+  Y + G  ++A +    M  
Sbjct: 365 STVIDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMES 424

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
            G K D     +++  YGK+   ++   +  E++ +   P   TY+ L+D   +  L  E
Sbjct: 425 SGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQE 484

Query: 486 AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERI 543
           A ++  +  + G      +  +L D   + G+ + A+  L   E  KE + P+   +  I
Sbjct: 485 AMEVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSFLD--EMTKEGIRPNVVTYNSI 542

Query: 544 INGL 547
           I+  
Sbjct: 543 IDAF 546



 Score = 42.4 bits (98), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 26/120 (21%), Positives = 57/120 (47%), Gaps = 1/120 (0%)

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           ++   G+ G  + A++ F+  +  G+       +++I+AYG+    D+A+ +   ++  G
Sbjct: 191 MISILGRLGQVELAKNVFETALNEGYGNTVYAFSALISAYGRSGYCDEAIKVFETMKSSG 250

Query: 463 FEPGPATYTVLVDWLGRLQL-INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKA 521
            +P   TY  ++D  G+  +  N A ++  ++   G  P      SL  +  R G+ + A
Sbjct: 251 LKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMLRNGVQPDRITFNSLLAVCGRGGLWEAA 310


>gi|413920478|gb|AFW60410.1| hypothetical protein ZEAMMB73_296337 [Zea mays]
          Length = 676

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 148/330 (44%), Gaps = 9/330 (2%)

Query: 218 LQPSRIDWINLLDRL-----REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC 272
           L+P+     +L+D L      E+  +L+ K+ +      S++ NV  Y+ +I  + KE  
Sbjct: 282 LKPNVYTHTSLIDGLCKIGWMERAFRLFLKLVK----SSSYKPNVHTYTVMIGGYCKEGK 337

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           L  AE +L +M E G+ P+  T T L+H + K G+ DRA E    ++  GF P+   YN+
Sbjct: 338 LARAEMLLGRMVEQGLAPNTNTYTTLIHGHCKGGSFDRAFELMNKMKLEGFLPNIYTYNA 397

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I  +   G+ +    ++ M  + G+   +  Y  L+    + G +  A  +   M  + 
Sbjct: 398 IIGGFCKKGKIQEAYKVLRMATSQGLHLDKVTYTILITEHCKQGHITCALDLFKQMAEKS 457

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P + + T ++  Y Q    +Q++  FD  + +G  P  +   SMIA Y +   L  AL
Sbjct: 458 CHPDIHTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSMIAGYCRLGKLTSAL 517

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
            +   + + G  P   TY  L+  L +   + EA  L   + +    P    +V+L   Y
Sbjct: 518 KVFERMVQHGCLPDSITYGALISSLCKESRLEEARALFETMLDKHLVPCDVTRVTLAYEY 577

Query: 513 ARAGIEKKALQALGFLEAKKEQMGPDDFER 542
            R      A+  L  L+ +++    D   R
Sbjct: 578 CRRDKITIAVSFLDRLDKRQQAHTADALVR 607



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 121/279 (43%), Gaps = 1/279 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +SE     N+ +YS  ID   +   ++ A  +L++M   G+ P++ T T L+    K G 
Sbjct: 242 MSEMGTPPNMVNYSAWIDGLCERGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGW 301

Query: 308 LDRAKEAFESL-RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           ++RA   F  L +S  ++P+   Y  MI  Y   G+      L+  M+  G+  +   Y 
Sbjct: 302 MERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYT 361

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+    + G    A ++ N M++E F P + +   ++  + + G   +A          
Sbjct: 362 TLIHGHCKGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQEAYKVLRMATSQ 421

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G   D      +I  + K+  +  AL+L  ++ +    P   TYT ++    + + + ++
Sbjct: 422 GLHLDKVTYTILITEHCKQGHITCALDLFKQMAEKSCHPDIHTYTTIIAMYCQQRQMEQS 481

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
           +QL  K   +G  P  +   S+   Y R G    AL+  
Sbjct: 482 QQLFDKCLSIGLVPTKQTYTSMIAGYCRLGKLTSALKVF 520



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 71/324 (21%), Positives = 123/324 (37%), Gaps = 51/324 (15%)

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIM-------AYVNAGQPKLGMSLVDMMITSG 357
           AG L  A +    LRSHG     +  N ++         + +A +   GM+        G
Sbjct: 121 AGRLREAADMLLELRSHGLPLVVETANWVLRVGLRHPGCFAHAREAFDGMARA----AGG 176

Query: 358 IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAG------ 411
           +      + AL+    + G    A  +   M  + F     +CT++V A+ + G      
Sbjct: 177 VRPDHRSFRALVLGCCREGRFEEADALLAAMWAQGFCLDSATCTVVVRAFCRQGRFRNVT 236

Query: 412 -----------DPD------------------QARSNFDYMIRLGHKPDDRCTASMIAAY 442
                       P+                  QA    + M+  G KP+     S+I   
Sbjct: 237 DLFRRMSEMGTPPNMVNYSAWIDGLCERGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGL 296

Query: 443 GKKNLLDKALNLLLELEK-DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
            K   +++A  L L+L K   ++P   TYTV++    +   +  AE LLG++ E G AP 
Sbjct: 297 CKIGWMERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPN 356

Query: 502 FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRV 559
                +L   + + G   +A + +   + K E   P+   +  II G    G +Q+A +V
Sbjct: 357 TNTYTTLIHGHCKGGSFDRAFELMN--KMKLEGFLPNIYTYNAIIGGFCKKGKIQEAYKV 414

Query: 560 HGLMEAQGFAASERLKVALISSQT 583
             +  +QG    +     LI+   
Sbjct: 415 LRMATSQGLHLDKVTYTILITEHC 438


>gi|302809589|ref|XP_002986487.1| hypothetical protein SELMODRAFT_182414 [Selaginella moellendorffii]
 gi|300145670|gb|EFJ12344.1| hypothetical protein SELMODRAFT_182414 [Selaginella moellendorffii]
          Length = 773

 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/378 (24%), Positives = 150/378 (39%), Gaps = 55/378 (14%)

Query: 198 ILSLEKEEDPSPLLAEWKELLQPSR---IDWINLLDRLREQNTQLYFKVAELVLSEESFQ 254
           +L+  K+E   P L  +  +L       +DW  LL+   +             +  E  Q
Sbjct: 139 LLARMKKERVEPNLITYNTVLNACSKGGLDWEGLLNLFAQ-------------MRHEGIQ 185

Query: 255 TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA 314
            ++  Y+ L+ A +    +E A  + K MNE+G+V D VT   LV  ++ +  L R +E 
Sbjct: 186 PDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAVTYKSLVDTFAGSNQLGRVEEL 245

Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
              +   G  PD   YNS+I AY +AG                                 
Sbjct: 246 LREMEDEGNSPDIAGYNSLIEAYADAG--------------------------------- 272

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
             +V GA  +   M+     P +E+ + L+  YG  G  +Q RS F  M  L   P    
Sbjct: 273 --NVHGAAGVFKQMQRGGCAPDVETYSTLLRIYGNQGCFEQVRSLFSDMKELSTPPTVAT 330

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
             S+I  +G+     +++NL  ++   G +P  ATY+ L+   GR  L  EA ++   + 
Sbjct: 331 YNSLIQVFGEGGYFQESINLFHDMVDSGVKPDDATYSALLSVCGRGGLTREAAKIHQHML 390

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP--DDFERIINGLLAGGF 552
                P  +    L   Y +  + K AL  + +   ++  + P    ++ +I G   GG 
Sbjct: 391 TNESTPSLEASAGLISSYGKMAMYKDAL--VSYYRIREAGLDPQVSAYDALIQGYAKGGL 448

Query: 553 LQDAQRVHGLMEAQGFAA 570
             +A      M   GF A
Sbjct: 449 YVEAGSTLYAMNKAGFQA 466



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 128/278 (46%), Gaps = 9/278 (3%)

Query: 242 KVAELV--LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLV 299
           +V EL+  + +E    ++  Y+ LI+A+A    +  A  + K+M   G  PD+ T + L+
Sbjct: 241 RVEELLREMEDEGNSPDIAGYNSLIEAYADAGNVHGAAGVFKQMQRGGCAPDVETYSTLL 300

Query: 300 HMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
            +Y   G  ++ +  F  ++     P    YNS+I  +   G  +  ++L   M+ SG++
Sbjct: 301 RIYGNQGCFEQVRSLFSDMKELSTPPTVATYNSLIQVFGEGGYFQESINLFHDMVDSGVK 360

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
             +  Y ALL    + G  R A +I   M   E  P+LE+   L+ +YG+      A  +
Sbjct: 361 PDDATYSALLSVCGRGGLTREAAKIHQHMLTNESTPSLEASAGLISSYGKMAMYKDALVS 420

Query: 420 FDYMIR-LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLG 478
           + Y IR  G  P      ++I  Y K  L  +A + L  + K GF+   ++   +++   
Sbjct: 421 Y-YRIREAGLDPQVSAYDALIQGYAKGGLYVEAGSTLYAMNKAGFQAPVSSVNSVMEAYS 479

Query: 479 RLQLINEAEQLLGKI-----SELGEAPPFKIQVSLCDM 511
           ++ L +EA +   ++     SE+ E     +    CDM
Sbjct: 480 KVGLHDEALEFFSELQQKEGSEVDERTHETLLGVYCDM 517



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 44/214 (20%), Positives = 90/214 (42%), Gaps = 6/214 (2%)

Query: 382 GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL-GHKPDDRCTASMIA 440
           G +T  M +   + T++  +L+   +    D  +A   F YM R    KP +     MI 
Sbjct: 31  GSVTRCMDLYRSKLTMQDFSLIFREFAARSDWHRALRLFKYMQRQQWCKPTEHIYTIMIG 90

Query: 441 AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
             G++ LL+K   +  ++ ++  +     +T L++  GR      +  LL ++ +    P
Sbjct: 91  IMGREGLLEKCSEIFEDMPENDVKWNVYAFTALINAYGRNGQYEASLHLLARMKKERVEP 150

Query: 501 PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQR 558
                 ++ +  ++ G++ + L  L F + + E + PD   +  +++   + G ++ A  
Sbjct: 151 NLITYNTVLNACSKGGLDWEGLLNL-FAQMRHEGIQPDLITYNTLLSACSSRGLVEQAAM 209

Query: 559 VHGLMEAQGFAASERLKVALISSQTFNRQRQPTR 592
           V   M   G  A      +L+   TF    Q  R
Sbjct: 210 VFKTMNESGVVADAVTYKSLV--DTFAGSNQLGR 241



 Score = 38.5 bits (88), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 9/127 (7%)

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEF-QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           + R FA   D   A ++   M+ +++ +PT    T+++   G+ G  ++    F+ M   
Sbjct: 52  IFREFAARSDWHRALRLFKYMQRQQWCKPTEHIYTIMIGIMGREGLLEKCSEIFEDMPEN 111

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATY-TVL-------VDWLG 478
             K +     ++I AYG+    + +L+LL  ++K+  EP   TY TVL       +DW G
Sbjct: 112 DVKWNVYAFTALINAYGRNGQYEASLHLLARMKKERVEPNLITYNTVLNACSKGGLDWEG 171

Query: 479 RLQLINE 485
            L L  +
Sbjct: 172 LLNLFAQ 178


>gi|414888269|tpg|DAA64283.1| TPA: hypothetical protein ZEAMMB73_921256 [Zea mays]
          Length = 616

 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 139/323 (43%), Gaps = 2/323 (0%)

Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311
           S + ++  Y+ L+ A A  +  + +E +L  M E G+ PD V+   +V  ++ AGNL RA
Sbjct: 246 SVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVSPDTVSYRHIVDAFASAGNLSRA 305

Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
            E F  + + G   D   Y  ++ A+   G     ++++  M   G   +   Y  LL  
Sbjct: 306 AELFSEMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQADGCAPTAATYRVLLDL 365

Query: 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
           + + G   G  Q+   MR     P   +  +L   +G  G   +    F  M++ G +PD
Sbjct: 366 YGRQGRFDGVRQLFREMRT-AVPPDTATYNVLFRVFGDGGFFKEVVELFHDMLKTGVQPD 424

Query: 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
                +++AA G   L   A  +L  + ++G  P    YT LV+ LG   +  EA     
Sbjct: 425 MVTCENVMAACGHGGLHGDAREVLEYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFN 484

Query: 492 KISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE-QMGPDDFERIINGLLAG 550
            ++E+G  P  +   +L   YAR G+ ++A      +      Q   D F+ +I     G
Sbjct: 485 MMTEIGSLPTLETYNALAFAYARGGLFQEAEAIFSRMSNNAGIQKSKDSFDALIEAYCQG 544

Query: 551 GFLQDAQRVHGLMEAQGFAASER 573
             L DA + +  M    F   ER
Sbjct: 545 SRLDDAVKAYMEMRKSRFNPDER 567



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 76/173 (43%), Gaps = 1/173 (0%)

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           DA  +L+ M   G+VP     T LV     A   + A  AF  +   G  P  + YN++ 
Sbjct: 443 DAREVLEYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTLETYNALA 502

Query: 335 MAYVNAGQPKLGMSLVDMMIT-SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
            AY   G  +   ++   M   +GI++S++ + AL+ ++ Q   +  A +    MR   F
Sbjct: 503 FAYARGGLFQEAEAIFSRMSNNAGIQKSKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRF 562

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKN 446
            P   S   ++ AY  AG  D+++  F+ +      P       M++ Y + +
Sbjct: 563 NPDERSLEGVLNAYCIAGVIDESKEQFEELQSSVTMPSVIAYCMMLSLYARND 615



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 83/202 (41%), Gaps = 1/202 (0%)

Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338
           +   M + G+ PD+VT   ++      G    A+E  E +   G  P    Y  ++ A  
Sbjct: 412 LFHDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVLEYMTREGMVPTADAYTGLVEALG 471

Query: 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE-FQPTL 397
           +A   +      +MM   G   + E Y AL  ++A+ G  + A  I + M      Q + 
Sbjct: 472 HAAMYEEAYVAFNMMTEIGSLPTLETYNALAFAYARGGLFQEAEAIFSRMSNNAGIQKSK 531

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
           +S   L+EAY Q    D A   +  M +    PD+R    ++ AY    ++D++     E
Sbjct: 532 DSFDALIEAYCQGSRLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVIDESKEQFEE 591

Query: 458 LEKDGFEPGPATYTVLVDWLGR 479
           L+     P    Y +++    R
Sbjct: 592 LQSSVTMPSVIAYCMMLSLYAR 613



 Score = 40.4 bits (93), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 4/101 (3%)

Query: 241 FKVAELVLSEESFQTNVR----DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTST 296
           F+ AE + S  S    ++     +  LI+A+ + + L+DA +   +M ++   PD  +  
Sbjct: 511 FQEAEAIFSRMSNNAGIQKSKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRFNPDERSLE 570

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
            +++ Y  AG +D +KE FE L+S    P    Y  M+  Y
Sbjct: 571 GVLNAYCIAGVIDESKEQFEELQSSVTMPSVIAYCMMLSLY 611


>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
 gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
          Length = 475

 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 123/260 (47%), Gaps = 2/260 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+  ++   ++  + DA+ + ++M   G  PD++T + L+H +S A   D+A E F
Sbjct: 191 NVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHELF 250

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E++ S G +P+   YN ++       +P     L   M+  G +  +  Y  LL  F   
Sbjct: 251 EAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNV 310

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A ++ + M  +   P + +   L++ + +AG P +AR  F  M+    KPD    
Sbjct: 311 GKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPDTVSH 370

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKD-GFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
             MI    K   LD A+ +   +E+D G  P   TY  L+  L   Q ++EA ++  +I 
Sbjct: 371 NIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEID 430

Query: 495 ELGEAP-PFKIQVSLCDMYA 513
            L  +P P    V L  MYA
Sbjct: 431 RLKLSPDPHAFNVLLEAMYA 450



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/335 (21%), Positives = 146/335 (43%), Gaps = 6/335 (1%)

Query: 221 SRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERI 279
           S   + +LL+ L + +     F +   ++SE S   +V  YS LID   K + L  AE++
Sbjct: 120 SCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKL 179

Query: 280 LKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339
            K+M +   VP++ T    ++   + G +  A+  +E + S G  PD   Y+++I  +  
Sbjct: 180 YKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSL 239

Query: 340 AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLES 399
           A +      L + MI+ G   +   Y  LL    +      A ++   M      P   +
Sbjct: 240 ARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVT 299

Query: 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELE 459
            T L+  +   G  +QA   FD M+  GH PD      ++  + +     +A  L   + 
Sbjct: 300 YTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMV 359

Query: 460 KDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI-SELGEAPPFKIQVSLCDMYARAGIE 518
               +P   ++ +++D L + + +++A ++  ++  + G +P      SL  ++   G +
Sbjct: 360 SRECKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSL--IFGLCGEQ 417

Query: 519 KKALQALGFLEAKKEQMGPDD--FERIINGLLAGG 551
           + +     F E  + ++ PD   F  ++  + A G
Sbjct: 418 RLSEAMKVFKEIDRLKLSPDPHAFNVLLEAMYAAG 452



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 65/313 (20%), Positives = 126/313 (40%), Gaps = 40/313 (12%)

Query: 255 TNVRDYSKLIDAHAKENCLEDAERILKKM-NENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           ++   Y+ L+++  K   +  A  I   M +E  +VPD+V+ ++L+  + K   L RA++
Sbjct: 119 SSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEK 178

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            ++ +      P+   YN+ +   +  G+      + + MI++G                
Sbjct: 179 LYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGC--------------- 223

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
                                P + + + L+  +  A   DQA   F+ MI  G +P+  
Sbjct: 224 --------------------SPDVITYSTLIHGFSLARKHDQAHELFEAMISRGCRPNAV 263

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
               ++    K++  D+A  L  ++ + G +P   TYT L+     +  I +A ++  ++
Sbjct: 264 TYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEM 323

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFER--IINGLLAGG 551
              G  P       L   + RAG   +A Q    + ++  +  PD      +I+GL    
Sbjct: 324 VSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSR--ECKPDTVSHNIMIDGLSKAK 381

Query: 552 FLQDAQRVHGLME 564
            L DA  V   ME
Sbjct: 382 RLDDAVEVFERME 394



 Score = 43.1 bits (100), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 63/297 (21%), Positives = 109/297 (36%), Gaps = 42/297 (14%)

Query: 294 TSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMM 353
           T   ++    KAG +D A    E++   G+ PD   ++ +I     A + +     +  M
Sbjct: 51  TCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGM 110

Query: 354 ITSGIERSEEI--YLALLRSFAQCGDVRGAGQITNIMRIE-EFQPTLESCTLLVEAY--- 407
             +   R+     Y +LL S  +   V  A  I + M  E    P + S ++L++ +   
Sbjct: 111 NRTISTRASSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKI 170

Query: 408 ---GQA-----------------------------GDPDQARSNFDYMIRLGHKPDDRCT 435
              G+A                             G    A+  ++ MI  G  PD    
Sbjct: 171 DELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITY 230

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
           +++I  +      D+A  L   +   G  P   TY  L+  L +    +EA +L  K+ E
Sbjct: 231 STLIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVE 290

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
            G  P      +L   +   G  ++A++    + +K    G D      N LL G F
Sbjct: 291 RGCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSK----GHDPDVVAYNCLLKGFF 343


>gi|326504498|dbj|BAJ91081.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 793

 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 155/343 (45%), Gaps = 40/343 (11%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG------------- 306
           Y+ L+ A ++ +   DA  + ++M  NGI P IVT  V++H+YSK               
Sbjct: 181 YTALVSAFSRASRFRDAVAVFRRMVANGIQPAIVTYNVVLHVYSKIAVPWKDVVALVDSM 240

Query: 307 -----NLDR------------------AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343
                 LDR                  A + F+ +R+ GF+PDK  +NS++  Y  A   
Sbjct: 241 KNDGIPLDRYTYNTLISCCRRGALYKEAAKVFDEMRAAGFEPDKVTFNSLLDVYGKARMH 300

Query: 344 KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403
              + ++  M   G   S   Y +L+ S+ + G ++ A ++   M ++  QP + + T L
Sbjct: 301 DEAIGVLKEMELGGCPPSVVTYNSLISSYVKDGLLKEAAELKEEMEVKGIQPDVITYTTL 360

Query: 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGF 463
           +    +AG  D A   +D M+R G KP+     ++I  +G +    + + +  +L   GF
Sbjct: 361 ISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLRSAGF 420

Query: 464 EPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
            P   T+  L+   G+  L +E   +  ++ + G  P     VSL   Y+R G+  ++++
Sbjct: 421 VPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQSME 480

Query: 524 ALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLME 564
              +    +  + PD   +  +++ L  GG  + A+++   ME
Sbjct: 481 I--YKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEME 521



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 118/263 (44%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F+ +   ++ L+D + K    ++A  +LK+M   G  P +VT   L+  Y K G L  A 
Sbjct: 280 FEPDKVTFNSLLDVYGKARMHDEAIGVLKEMELGGCPPSVVTYNSLISSYVKDGLLKEAA 339

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           E  E +   G QPD   Y ++I     AG+    +   D M+ +G + +   Y AL++  
Sbjct: 340 ELKEEMEVKGIQPDVITYTTLISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLH 399

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
              G       + + +R   F P + +   L+  +GQ G   +    F  M + G+ P+ 
Sbjct: 400 GVRGKFPEMMAVFDDLRSAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPER 459

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               S+I++Y +  L D+++ +   + + G  P  +TY  ++  L R     +AE+L  +
Sbjct: 460 DTYVSLISSYSRCGLFDQSMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAE 519

Query: 493 ISELGEAPPFKIQVSLCDMYARA 515
           +  L   P      SL   YA A
Sbjct: 520 MENLDCRPDELSYSSLLHAYANA 542



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 124/300 (41%), Gaps = 11/300 (3%)

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP-KLGMS 348
           PD    T LV  +S+A     A   F  + ++G QP    YN ++  Y     P K  ++
Sbjct: 176 PDASAYTALVSAFSRASRFRDAVAVFRRMVANGIQPAIVTYNVVLHVYSKIAVPWKDVVA 235

Query: 349 LVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYG 408
           LVD M   GI      Y  L+    +    + A ++ + MR   F+P   +   L++ YG
Sbjct: 236 LVDSMKNDGIPLDRYTYNTLISCCRRGALYKEAAKVFDEMRAAGFEPDKVTFNSLLDVYG 295

Query: 409 QAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPA 468
           +A   D+A      M   G  P      S+I++Y K  LL +A  L  E+E  G +P   
Sbjct: 296 KARMHDEAIGVLKEMELGGCPPSVVTYNSLISSYVKDGLLKEAAELKEEMEVKGIQPDVI 355

Query: 469 TYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALG-F 527
           TYT L+  L R   I+ A     ++   G  P      +L  ++   G+  K  + +  F
Sbjct: 356 TYTTLISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLH---GVRGKFPEMMAVF 412

Query: 528 LEAKKEQMGPDDFERIINGLLA----GGFLQDAQRVHGLMEAQGFAASERLKVALISSQT 583
            + +     PD      N LLA     G   +   V   M+  G+       V+LISS +
Sbjct: 413 DDLRSAGFVPDVV--TWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYS 470



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 65/325 (20%), Positives = 132/325 (40%), Gaps = 35/325 (10%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA---- 311
           +V  Y+ LI ++ K+  L++A  + ++M   GI PD++T T L+    +AG +D A    
Sbjct: 318 SVVTYNSLISSYVKDGLLKEAAELKEEMEVKGIQPDVITYTTLISGLDRAGKIDAAIGTY 377

Query: 312 -------------------------------KEAFESLRSHGFQPDKKVYNSMIMAYVNA 340
                                             F+ LRS GF PD   +N+++  +   
Sbjct: 378 DEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLRSAGFVPDVVTWNTLLAVFGQN 437

Query: 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
           G       +   M  SG     + Y++L+ S+++CG    + +I   M      P + + 
Sbjct: 438 GLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQSMEIYKRMIEAGIYPDISTY 497

Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
             ++ A  + G  +QA   F  M  L  +PD+   +S++ AY     LDK   L  ++  
Sbjct: 498 NAVLSALARGGRWEQAEKLFAEMENLDCRPDELSYSSLLHAYANAKKLDKMKALSEDIYA 557

Query: 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKK 520
           +  E        LV    ++  ++E E+   ++     +    +  ++  +Y +  + KK
Sbjct: 558 EKIESHHGLVKTLVLVNSKVNNLSETEKAFLELGRRRCSLDINVLNAMVSVYGKNRMVKK 617

Query: 521 ALQALGFLEAKKEQMGPDDFERIIN 545
             + L  ++     +    +  +++
Sbjct: 618 VEEILSLMKGSSINLSTATYNSLMH 642



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 62/292 (21%), Positives = 123/292 (42%), Gaps = 35/292 (11%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  LI ++++    + +  I K+M E GI PDI T   ++   ++ G  ++A++ F  + 
Sbjct: 462 YVSLISSYSRCGLFDQSMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEME 521

Query: 320 SHGFQPDKKVYNSMIMAYVNAG-----------------QPKLGMSLVDMMITSGIER-- 360
           +   +PD+  Y+S++ AY NA                  +   G+    +++ S +    
Sbjct: 522 NLDCRPDELSYSSLLHAYANAKKLDKMKALSEDIYAEKIESHHGLVKTLVLVNSKVNNLS 581

Query: 361 -SEEIYL---------------ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
            +E+ +L               A++  + +   V+   +I ++M+      +  +   L+
Sbjct: 582 ETEKAFLELGRRRCSLDINVLNAMVSVYGKNRMVKKVEEILSLMKGSSINLSTATYNSLM 641

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
             Y + GD ++  +    +   G +PD     +MI AYG+K  + +A  L  E++  G  
Sbjct: 642 HMYSRLGDCEKCENILTEIKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKSSGLI 701

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
           P   TY + V       +  EA  L+  +   G  P  +   S+   Y R G
Sbjct: 702 PDIVTYNIFVKSYVANSMFEEAIDLVRYMVTRGCKPNERTYNSILQEYCRHG 753



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 69/335 (20%), Positives = 133/335 (39%), Gaps = 45/335 (13%)

Query: 220 PSRIDWINLLDR-----LREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           P R  +++L+       L +Q+ ++Y +     + E     ++  Y+ ++ A A+    E
Sbjct: 457 PERDTYVSLISSYSRCGLFDQSMEIYKR-----MIEAGIYPDISTYNAVLSALARGGRWE 511

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS------HGF----- 323
            AE++  +M      PD ++ + L+H Y+ A  LD+ K   E + +      HG      
Sbjct: 512 QAEKLFAEMENLDCRPDELSYSSLLHAYANAKKLDKMKALSEDIYAEKIESHHGLVKTLV 571

Query: 324 ------------------------QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
                                     D  V N+M+  Y      K    ++ +M  S I 
Sbjct: 572 LVNSKVNNLSETEKAFLELGRRRCSLDINVLNAMVSVYGKNRMVKKVEEILSLMKGSSIN 631

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
            S   Y +L+  +++ GD      I   ++    +P   S   ++ AYG+ G   +A   
Sbjct: 632 LSTATYNSLMHMYSRLGDCEKCENILTEIKSSGARPDRYSYNTMIYAYGRKGQMKEASRL 691

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
           F  M   G  PD       + +Y   ++ ++A++L+  +   G +P   TY  ++    R
Sbjct: 692 FSEMKSSGLIPDIVTYNIFVKSYVANSMFEEAIDLVRYMVTRGCKPNERTYNSILQEYCR 751

Query: 480 LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
              I +A+  L  + +L      + Q  L ++ AR
Sbjct: 752 HGKIADAKSFLSNLPQLHPGISKQEQQRLLELLAR 786


>gi|242032435|ref|XP_002463612.1| hypothetical protein SORBIDRAFT_01g002930 [Sorghum bicolor]
 gi|241917466|gb|EER90610.1| hypothetical protein SORBIDRAFT_01g002930 [Sorghum bicolor]
          Length = 638

 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 139/323 (43%), Gaps = 2/323 (0%)

Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311
           S + ++  Y+ L+ A A  +  + +E +L+ M E G+ PD V+   +V  ++ AGNL R 
Sbjct: 16  SVRPDLTTYNTLLAAAAVRSLADQSEMLLRTMLEAGVSPDTVSYRYIVDAFASAGNLSRV 75

Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
            E F  +   G   D   Y  ++ A+   G     ++++  M   G   +   Y  LL  
Sbjct: 76  AELFSEMAVMGNTADASAYLGLMEAHTRVGATAEAVAVLRQMQADGCAPTAATYRVLLDL 135

Query: 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
           + + G   G  ++   MR     P   +  +L   YG  G   +    F  M+  G +PD
Sbjct: 136 YGRQGRFDGVRELFREMRT-AVPPDTATYNVLFRVYGDGGFFKEVVELFHDMLETGVEPD 194

Query: 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
                +++AA G+  L + A  +L  + ++G  P    YT LV+ LG   +  EA     
Sbjct: 195 MVTCENVMAACGRGGLHEDAREVLEYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFN 254

Query: 492 KISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE-QMGPDDFERIINGLLAG 550
            ++E+G  P  +   +L   YAR G+ ++A      +      Q   D F+ +I     G
Sbjct: 255 MMTEIGSLPTLETYNTLAFAYARGGLFQEAEAIFSRMSNNAGIQKNKDSFDALIEAYCQG 314

Query: 551 GFLQDAQRVHGLMEAQGFAASER 573
             L DA + +  M    F   ER
Sbjct: 315 AQLDDAVKAYMEMRKSRFNPDER 337



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 85/189 (44%), Gaps = 1/189 (0%)

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           EDA  +L+ M   G+VP     T LV     A   + A  AF  +   G  P  + YN++
Sbjct: 212 EDAREVLEYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTLETYNTL 271

Query: 334 IMAYVNAGQPKLGMSLVDMMIT-SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
             AY   G  +   ++   M   +GI+++++ + AL+ ++ Q   +  A +    MR   
Sbjct: 272 AFAYARGGLFQEAEAIFSRMSNNAGIQKNKDSFDALIEAYCQGAQLDDAVKAYMEMRKSR 331

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
           F P   S   ++ AY  AG  D+++  F+ +      P       M++ Y + +    A 
Sbjct: 332 FNPDERSLEGVLNAYCIAGVIDESKEQFEELQSSVTLPSIIAYCMMLSLYARNDRWADAY 391

Query: 453 NLLLELEKD 461
           ++L E++ +
Sbjct: 392 DMLEEMKTN 400



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/221 (22%), Positives = 89/221 (40%), Gaps = 1/221 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L   +      ++   +   M E G+ PD+VT   ++    + G  + A+E  E + 
Sbjct: 163 YNVLFRVYGDGGFFKEVVELFHDMLETGVEPDMVTCENVMAACGRGGLHEDAREVLEYMT 222

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P    Y  ++ A  +A   +      +MM   G   + E Y  L  ++A+ G  +
Sbjct: 223 REGMVPTADAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTLETYNTLAFAYARGGLFQ 282

Query: 380 GAGQITNIMRIEE-FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
            A  I + M      Q   +S   L+EAY Q    D A   +  M +    PD+R    +
Sbjct: 283 EAEAIFSRMSNNAGIQKNKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGV 342

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
           + AY    ++D++     EL+     P    Y +++    R
Sbjct: 343 LNAYCIAGVIDESKEQFEELQSSVTLPSIIAYCMMLSLYAR 383



 Score = 42.0 bits (97), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 63/134 (47%), Gaps = 4/134 (2%)

Query: 241 FKVAELVLSEES----FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTST 296
           F+ AE + S  S     Q N   +  LI+A+ +   L+DA +   +M ++   PD  +  
Sbjct: 281 FQEAEAIFSRMSNNAGIQKNKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLE 340

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
            +++ Y  AG +D +KE FE L+S    P    Y  M+  Y    +      +++ M T+
Sbjct: 341 GVLNAYCIAGVIDESKEQFEELQSSVTLPSIIAYCMMLSLYARNDRWADAYDMLEEMKTN 400

Query: 357 GIERSEEIYLALLR 370
               + ++  +L++
Sbjct: 401 RASSTHQVIASLIK 414


>gi|224120112|ref|XP_002331139.1| predicted protein [Populus trichocarpa]
 gi|222872867|gb|EEF09998.1| predicted protein [Populus trichocarpa]
          Length = 329

 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 149/325 (45%)

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           V  Y+ LID H     +++ ER+ ++M E GI  DI   TV+++   K GN  RA   F+
Sbjct: 1   VATYTLLIDWHGSSGKIDEVERMFEEMCEKGIKADIHVYTVVINWNCKIGNTKRAFALFD 60

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
            L   G   +   Y ++I     AG+ +    LV+ M T G++ ++ IY  L+  + + G
Sbjct: 61  ELTEKGLVANVHTYGALIDGVCKAGEMEAAEILVNEMQTRGLDVNQLIYNTLIDGYCKRG 120

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
            +  A ++  IM  + F+  + +   + +   +   P++A+     MI  G  P+     
Sbjct: 121 LIDEAFKVQVIMEKKGFENDIYTLNTIADGLRKLNQPEEAKRWLLTMIEKGVVPNVVSYT 180

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
           ++I  Y K+    +A  L  E++K G EP   TY VL+D   +   + EA +L  ++   
Sbjct: 181 TLIDIYCKEGNFVEAKKLFQEMKKAGGEPNAVTYNVLIDGHSKKGRMKEAYELRDEMRAK 240

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDA 556
           G  P      SL       G    A++    +  K   +    +  II+GL   G  ++A
Sbjct: 241 GIFPDIYTYTSLLHGECIFGKLDDAVELFNEVRQKGLPLNVVTYTAIISGLSKEGRSEEA 300

Query: 557 QRVHGLMEAQGFAASERLKVALISS 581
            +++  M   G    +R+  +L+SS
Sbjct: 301 FKLYDEMTEAGLTPDDRVYTSLVSS 325



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 103/204 (50%), Gaps = 1/204 (0%)

Query: 241 FKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
           FKV ++++ ++ F+ ++   + + D   K N  E+A+R L  M E G+VP++V+ T L+ 
Sbjct: 126 FKV-QVIMEKKGFENDIYTLNTIADGLRKLNQPEEAKRWLLTMIEKGVVPNVVSYTTLID 184

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
           +Y K GN   AK+ F+ ++  G +P+   YN +I  +   G+ K    L D M   GI  
Sbjct: 185 IYCKEGNFVEAKKLFQEMKKAGGEPNAVTYNVLIDGHSKKGRMKEAYELRDEMRAKGIFP 244

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
               Y +LL      G +  A ++ N +R +     + + T ++    + G  ++A   +
Sbjct: 245 DIYTYTSLLHGECIFGKLDDAVELFNEVRQKGLPLNVVTYTAIISGLSKEGRSEEAFKLY 304

Query: 421 DYMIRLGHKPDDRCTASMIAAYGK 444
           D M   G  PDDR   S++++  K
Sbjct: 305 DEMTEAGLTPDDRVYTSLVSSLHK 328



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 116/271 (42%), Gaps = 6/271 (2%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L+E+    NV  Y  LID   K   +E AE ++ +M   G+  + +    L+  Y K G 
Sbjct: 62  LTEKGLVANVHTYGALIDGVCKAGEMEAAEILVNEMQTRGLDVNQLIYNTLIDGYCKRGL 121

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D A +    +   GF+ D    N++        QP+     +  MI  G+  +   Y  
Sbjct: 122 IDEAFKVQVIMEKKGFENDIYTLNTIADGLRKLNQPEEAKRWLLTMIEKGVVPNVVSYTT 181

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+  + + G+   A ++   M+    +P   +  +L++ + + G   +A    D M   G
Sbjct: 182 LIDIYCKEGNFVEAKKLFQEMKKAGGEPNAVTYNVLIDGHSKKGRMKEAYELRDEMRAKG 241

Query: 428 HKPDDRCTASMI---AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
             PD     S++     +GK   LD A+ L  E+ + G      TYT ++  L +     
Sbjct: 242 IFPDIYTYTSLLHGECIFGK---LDDAVELFNEVRQKGLPLNVVTYTAIISGLSKEGRSE 298

Query: 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
           EA +L  +++E G  P  ++  SL     +A
Sbjct: 299 EAFKLYDEMTEAGLTPDDRVYTSLVSSLHKA 329


>gi|224143015|ref|XP_002324819.1| predicted protein [Populus trichocarpa]
 gi|222866253|gb|EEF03384.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 155/322 (48%), Gaps = 4/322 (1%)

Query: 242 KVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM 301
           K+ EL+  E + + N+R Y+ L+ A   +  + +A  ++ KM  +GI PD+VT   +   
Sbjct: 139 KLLELMSQEGNVKPNLRTYNVLVRAWCNKKRITEAWNVVYKMIASGIQPDVVTYNTIATA 198

Query: 302 YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS 361
           Y++ G LD+A+     ++++G QP+++    ++  Y   G+ +  +     M   GI  +
Sbjct: 199 YAQKGALDQAEGVILEMQNNGVQPNERTCGIIMSGYCKEGRIREALRFAYRMKELGIHPN 258

Query: 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEF--QPTLESCTLLVEAYGQAGDPDQARSN 419
             I+ +L++ F    D  G  ++ N+M  EEF  +P + + + ++ A+  AG  ++ R  
Sbjct: 259 LVIFNSLIKGFVAIMDRDGVDEVLNLM--EEFGVKPDVITFSTIMNAWSTAGFMEKCREI 316

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
           FD M++ G +PD    + +   Y +    +KA  LL  + K GF+P    +T ++     
Sbjct: 317 FDDMVKAGIEPDAHAYSILAKGYVRAQEPEKAEELLTTMIKSGFQPNVVIFTTVISGWCS 376

Query: 480 LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD 539
              ++ A ++  K+ + G +P  K   +L   +A A    KA + L  +   + Q     
Sbjct: 377 AGKMDYAVRVFDKMCQRGISPNLKTFETLIWGFAEARQPWKAEEILQIMTEFEVQPEKST 436

Query: 540 FERIINGLLAGGFLQDAQRVHG 561
              +     A G  ++A R+ G
Sbjct: 437 MLLVAEAWRATGMTKEANRLLG 458



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 75/339 (22%), Positives = 155/339 (45%), Gaps = 11/339 (3%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L E   + ++  Y+ L+ A   +   +    I+ ++ ENG+ PD +    +++ +S++GN
Sbjct: 39  LIEGGHKPSLISYTTLLAALTMQKRFDSIYSIISQVEENGMNPDSIFFNAVINAFSESGN 98

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG-IERSEEIYL 366
           ++ A E F  ++ +G +P    YN++I  Y  AG+P+  + L+++M   G ++ +   Y 
Sbjct: 99  MESAMETFWKMQENGMKPTTSTYNTLIKGYGIAGKPEESVKLLELMSQEGNVKPNLRTYN 158

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+R++     +  A  +   M     QP + +   +  AY Q G  DQA      M   
Sbjct: 159 VLVRAWCNKKRITEAWNVVYKMIASGIQPDVVTYNTIATAYAQKGALDQAEGVILEMQNN 218

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G +P++R    +++ Y K+  + +AL     +++ G  P    +  L+     +   +  
Sbjct: 219 GVQPNERTCGIIMSGYCKEGRIREALRFAYRMKELGIHPNLVIFNSLIKGFVAIMDRDGV 278

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
           +++L  + E G  P      ++ + ++ AG  +K  +   F +  K  + PD     I  
Sbjct: 279 DEVLNLMEEFGVKPDVITFSTIMNAWSTAGFMEKCREI--FDDMVKAGIEPDAHAYSI-- 334

Query: 547 LLAGGFL-----QDAQRVHGLMEAQGFAASERLKVALIS 580
            LA G++     + A+ +   M   GF  +  +   +IS
Sbjct: 335 -LAKGYVRAQEPEKAEELLTTMIKSGFQPNVVIFTTVIS 372



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/329 (22%), Positives = 145/329 (44%), Gaps = 10/329 (3%)

Query: 244 AELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS 303
            +   +++S +T VR  +KL++   ++   ++AE I   + E G  P +++ T L+   +
Sbjct: 1   CKFCTTKDSCRT-VRSRTKLMNFLVEKGKPQEAESIFYSLIEGGHKPSLISYTTLLAALT 59

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363
                D        +  +G  PD   +N++I A+  +G  +  M     M  +G++ +  
Sbjct: 60  MQKRFDSIYSIISQVEENGMNPDSIFFNAVINAFSESGNMESAMETFWKMQENGMKPTTS 119

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIE-EFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
            Y  L++ +   G    + ++  +M  E   +P L +  +LV A+       +A +    
Sbjct: 120 TYNTLIKGYGIAGKPEESVKLLELMSQEGNVKPNLRTYNVLVRAWCNKKRITEAWNVVYK 179

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
           MI  G +PD     ++  AY +K  LD+A  ++LE++ +G +P   T  +++    +   
Sbjct: 180 MIASGIQPDVVTYNTIATAYAQKGALDQAEGVILEMQNNGVQPNERTCGIIMSGYCKEGR 239

Query: 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYA----RAGIEKKALQALGFLEAKKEQMGPD 538
           I EA +   ++ ELG  P   I  SL   +     R G++    + L  +E    +    
Sbjct: 240 IREALRFAYRMKELGIHPNLVIFNSLIKGFVAIMDRDGVD----EVLNLMEEFGVKPDVI 295

Query: 539 DFERIINGLLAGGFLQDAQRVHGLMEAQG 567
            F  I+N     GF++  + +   M   G
Sbjct: 296 TFSTIMNAWSTAGFMEKCREIFDDMVKAG 324


>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
 gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 151/342 (44%), Gaps = 2/342 (0%)

Query: 217 LLQPSRIDWINLLDRLREQNTQLY-FKVAELVLSEESFQTNVRDYSKLIDAHAKENCLED 275
           L++P  I +  L+D L +   Q     + E + S+     N   Y+ LID + K + +E 
Sbjct: 375 LVEPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEA 434

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A  +  +MN++G+ P++VT   LV    K G ++ A E F  ++  G + +   Y ++I 
Sbjct: 435 ARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIR 494

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
           A+ N    +  M L D M+ +G      +Y  L+   +Q G +  A  + + M+   F P
Sbjct: 495 AFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSP 554

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
            + S  +L+  + +    D+A      M   G KPD     ++I+ + K      A  L+
Sbjct: 555 DIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLM 614

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVS-LCDMYAR 514
            ++ K+G  P   TY  L+        ++EA ++   +S   + PP  +  + L +   R
Sbjct: 615 KKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCR 674

Query: 515 AGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDA 556
                 AL  +  ++ K  +   + F  +  GL    +L  A
Sbjct: 675 KNQVDLALSLMDDMKVKGVKPNTNTFNAMFKGLQEKNWLSKA 716



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 98/219 (44%), Gaps = 1/219 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  LI   ++   L+ A  +L KM E G  PDIV+  VL++ + +   LD A E  + + 
Sbjct: 524 YYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEME 583

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G +PD   YN++I  +   G       L+  M+  G+  +   Y AL+ ++   G++ 
Sbjct: 584 NAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLD 643

Query: 380 GAGQITNIMR-IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
            A +I   M    +  P      +L+ +  +    D A S  D M   G KP+     +M
Sbjct: 644 EAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAM 703

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
                +KN L KA  L+  + +    P   T  +L +WL
Sbjct: 704 FKGLQEKNWLSKAFELMDRMTEHACNPDYITMEILTEWL 742



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 75/160 (46%), Gaps = 1/160 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI   +K      A R++KKM + G+VP +VT   L+H Y   GNLD A + F  + 
Sbjct: 594 YNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMS 653

Query: 320 SHG-FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
           S     P+  +YN +I +     Q  L +SL+D M   G++ +   + A+ +   +   +
Sbjct: 654 STSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKGLQEKNWL 713

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418
             A ++ + M      P   +  +L E     G+  + +S
Sbjct: 714 SKAFELMDRMTEHACNPDYITMEILTEWLSAVGETAKLKS 753


>gi|358346502|ref|XP_003637306.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
 gi|355503241|gb|AES84444.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
          Length = 603

 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 142/302 (47%), Gaps = 5/302 (1%)

Query: 214 WKELLQPSRIDWINLLDRLREQN-TQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC 272
           WK    P+     +L+D L ++  T+  F++   ++  E+ + NV  Y+ +I  + +E+ 
Sbjct: 306 WK----PNVYTHTSLIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCREDK 361

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           L  AE +L +M E G+VP+  T T L+  + KAGN +RA +    + S GF P+   YN+
Sbjct: 362 LNRAEMLLSRMKEQGLVPNTNTYTTLIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNA 421

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           ++      G+ +    +++    +G++  +  Y  L+    +  ++R A  + N M    
Sbjct: 422 IVNGLCKRGRVQEAYKMLEDGFQNGLKPDKFTYNILMSEHCKQENIRQALALFNKMLKIG 481

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
            QP + S T L+  + +     ++   F+  +R+G  P ++   SMI  Y ++  L  A+
Sbjct: 482 IQPDIHSYTTLIAVFCRENRMKESEMFFEEAVRIGIIPTNKTYTSMICGYCREGNLTLAM 541

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
                L   G  P   TY  ++  L +    +EA  L   + E G  P    +++L   Y
Sbjct: 542 KFFHRLSDHGCAPDSITYGAIISGLCKQSKRDEARSLYDSMIEKGLVPCEVTRITLAYEY 601

Query: 513 AR 514
            +
Sbjct: 602 CK 603



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 134/294 (45%), Gaps = 13/294 (4%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           L++A  ++ +M+  G+VP+  T   ++ + S+ G ++ A+  FE +   G QPD   Y  
Sbjct: 151 LKEAVEMVIEMHNQGLVPNTRTLNWIIKVTSEMGLVEYAELLFEEMCVRGVQPDSISYRV 210

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIM---- 388
           M++ Y   G        + +M+  G       +  ++  F+      G G  T  +    
Sbjct: 211 MVVMYCKIGNILEADKWLSVMLERGFVVDNATFTLIISRFS------GKGYTTRALWYFR 264

Query: 389 RIEE--FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKN 446
           R+ +   +P L + T ++E   + G   QA    + M+  G KP+     S+I    KK 
Sbjct: 265 RLVDMGLEPNLINFTCMIEGLCKRGSIKQAFEMLEEMVGKGWKPNVYTHTSLIDGLCKKG 324

Query: 447 LLDKALNLLLELEK-DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQ 505
             +KA  L L+L + +  +P   TYT ++    R   +N AE LL ++ E G  P     
Sbjct: 325 WTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCREDKLNRAEMLLSRMKEQGLVPNTNTY 384

Query: 506 VSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
            +L D + +AG  ++A   +  + ++        +  I+NGL   G +Q+A ++
Sbjct: 385 TTLIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKM 438



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 141/334 (42%), Gaps = 5/334 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L +   + N+ +++ +I+   K   ++ A  +L++M   G  P++ T T L+    K G 
Sbjct: 266 LVDMGLEPNLINFTCMIEGLCKRGSIKQAFEMLEEMVGKGWKPNVYTHTSLIDGLCKKGW 325

Query: 308 LDRAKEAFESL-RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            ++A   F  L RS   +P+   Y +MI  Y    +      L+  M   G+  +   Y 
Sbjct: 326 TEKAFRLFLKLVRSENHKPNVLTYTAMISGYCREDKLNRAEMLLSRMKEQGLVPNTNTYT 385

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+    + G+   A  + N+M  E F P L +   +V    + G   +A    +   + 
Sbjct: 386 TLIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKMLEDGFQN 445

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G KPD      +++ + K+  + +AL L  ++ K G +P   +YT L+    R   + E+
Sbjct: 446 GLKPDKFTYNILMSEHCKQENIRQALALFNKMLKIGIQPDIHSYTTLIAVFCRENRMKES 505

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERII 544
           E    +   +G  P  K   S+   Y R G    A++   F         PD   +  II
Sbjct: 506 EMFFEEAVRIGIIPTNKTYTSMICGYCREGNLTLAMKF--FHRLSDHGCAPDSITYGAII 563

Query: 545 NGLLAGGFLQDAQRVHGLMEAQGFAASERLKVAL 578
           +GL       +A+ ++  M  +G    E  ++ L
Sbjct: 564 SGLCKQSKRDEARSLYDSMIEKGLVPCEVTRITL 597


>gi|242069107|ref|XP_002449830.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
 gi|241935673|gb|EES08818.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
          Length = 676

 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 150/331 (45%), Gaps = 1/331 (0%)

Query: 218 LQPSRIDWINLLDRLREQN-TQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L+P+     +L+D L +   T+  F++   ++   S++ NV  Y+ +I  + KE  L  A
Sbjct: 282 LKPNVYTHTSLIDGLCKIGWTERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARA 341

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
           E +L +M E G+ P+  T T L+  + + G+ DRA E    ++  GF P+   YN++I  
Sbjct: 342 EMLLGRMVEQGLAPNTNTYTTLIDGHCRGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGG 401

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           +   G+ +    ++ M  + G+   +  Y  L+    + G +  A  + N M      P 
Sbjct: 402 FCKKGKIQQAYKVLRMATSQGLCPDKVTYTMLITEHCKQGHITYALDLFNQMAENSCHPD 461

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           +++ T ++  Y Q    +Q++  FD  + +G  P  +   SMIA Y +      AL +  
Sbjct: 462 IDTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSMIAGYCRVGKSTSALKVFE 521

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
            + + G  P P TY  L+  L +   + EA  L   + +    P     V+L   Y R  
Sbjct: 522 RMVQHGCLPDPITYGALISGLCKESRLEEARALFETMLDKHMVPCDVTCVTLAYEYCRRD 581

Query: 517 IEKKALQALGFLEAKKEQMGPDDFERIINGL 547
               A+  L  L+ +++    D   R ++ +
Sbjct: 582 KTTIAVSFLDGLDKRQQAHAADALVRKLSAV 612



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 70/303 (23%), Positives = 132/303 (43%), Gaps = 1/303 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV +Y+  +D   K   ++ A  +L++M   G+ P++ T T L+    K G  +RA   F
Sbjct: 250 NVVNYTAWVDGLCKRGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWTERAFRLF 309

Query: 316 ESL-RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
             L +S  ++P+   Y  MI  Y   G+      L+  M+  G+  +   Y  L+    +
Sbjct: 310 LKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIDGHCR 369

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
            G    A ++ N M++E F P + +   ++  + + G   QA          G  PD   
Sbjct: 370 GGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQQAYKVLRMATSQGLCPDKVT 429

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
              +I  + K+  +  AL+L  ++ ++   P   TYT ++    + + + +++QL  K  
Sbjct: 430 YTMLITEHCKQGHITYALDLFNQMAENSCHPDIDTYTTIIAMYCQQRQMEQSQQLFDKCL 489

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQ 554
            +G  P  +   S+   Y R G    AL+    +        P  +  +I+GL     L+
Sbjct: 490 SIGLVPTKQTYTSMIAGYCRVGKSTSALKVFERMVQHGCLPDPITYGALISGLCKESRLE 549

Query: 555 DAQ 557
           +A+
Sbjct: 550 EAR 552



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 59/264 (22%), Positives = 102/264 (38%), Gaps = 40/264 (15%)

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
           G+      + AL+    Q G    A  +   M  E F     +CT++V A+ + G     
Sbjct: 176 GVRPDARSFRALVLGCCQEGRFEEADALLAAMWREGFSLDSATCTVVVRAFCRQGRFRDV 235

Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476
              F  M+ +G+ P+     + +    K+  + +A ++L E+   G +P   T+T L+D 
Sbjct: 236 PGLFGRMVEMGNPPNVVNYTAWVDGLCKRGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDG 295

Query: 477 LGR-----------LQLINE-------------------------AEQLLGKISELGEAP 500
           L +           L+L+                           AE LLG++ E G AP
Sbjct: 296 LCKIGWTERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAP 355

Query: 501 PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQR 558
                 +L D + R G   +A + +   + K E   P+   +  II G    G +Q A +
Sbjct: 356 NTNTYTTLIDGHCRGGSFDRAFELMN--KMKLEGFLPNIYTYNAIIGGFCKKGKIQQAYK 413

Query: 559 VHGLMEAQGFAASERLKVALISSQ 582
           V  +  +QG    +     LI+  
Sbjct: 414 VLRMATSQGLCPDKVTYTMLITEH 437



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/253 (22%), Positives = 105/253 (41%), Gaps = 3/253 (1%)

Query: 287 GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLG 346
           G+ PD  +   LV    + G  + A     ++   GF  D      ++ A+   G+ +  
Sbjct: 176 GVRPDARSFRALVLGCCQEGRFEEADALLAAMWREGFSLDSATCTVVVRAFCRQGRFRDV 235

Query: 347 MSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA 406
             L   M+  G   +   Y A +    + G V+ A  +   M  +  +P + + T L++ 
Sbjct: 236 PGLFGRMVEMGNPPNVVNYTAWVDGLCKRGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDG 295

Query: 407 YGQAGDPDQARSNFDYMIR-LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
             + G  ++A   F  +++   +KP+      MI  Y K+  L +A  LL  + + G  P
Sbjct: 296 LCKIGWTERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAP 355

Query: 466 GPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
              TYT L+D   R    + A +L+ K+   G  P      ++   + + G  ++A + L
Sbjct: 356 NTNTYTTLIDGHCRGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQQAYKVL 415

Query: 526 GFLEAKKEQMGPD 538
               A  + + PD
Sbjct: 416 RM--ATSQGLCPD 426


>gi|357124917|ref|XP_003564143.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
           chloroplastic-like [Brachypodium distachyon]
          Length = 1285

 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 153/354 (43%), Gaps = 38/354 (10%)

Query: 210 LLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKVA---ELVLSEESFQTNVRDYSKLID 265
           LL E +++ L+P  I + N L     Q + L   VA   E++ SE   + ++  Y+ ++ 
Sbjct: 122 LLLEVRQVGLRPDVITY-NTLISACSQGSNLDDAVAVFEEMMASE--CRPDLWTYNAMVS 178

Query: 266 AHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQP 325
            H +    +DAER+ +++ E G  PD VT   L++ ++K G+ D  +   E L   GF+ 
Sbjct: 179 VHGRCGKAQDAERMFRELVEKGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAGFKK 238

Query: 326 DKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQIT 385
           D   YN+MI  Y   G+  L + L D M   G       Y  L+ S  +   +  AG++ 
Sbjct: 239 DGITYNTMIHMYGKMGRLDLALGLYDEMRALGCTPDAVTYTVLIDSLGKMDRISDAGKVL 298

Query: 386 NIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKK 445
             M     +PTL + + L+ AY + G  ++A   F +M+  G KPD      M+    + 
Sbjct: 299 EEMADAGLKPTLVTFSALICAYAKGGRREEAVRTFSHMVASGVKPDRLAYLVMLDIIARS 358

Query: 446 NLLDKALNLLLELEKDGFEPGPATYTVLVDWLG--------------------------- 478
             + K + L   +  DG+ P  A Y V++  L                            
Sbjct: 359 GDMRKLMALYQTMMNDGYRPDNALYQVMLAALAKGNEYDEIEAVVQDMEVVCQMNPQLVS 418

Query: 479 ----RLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFL 528
               + + I++  +LL K    G  P  K  +S+ D Y   G  ++ L  L F+
Sbjct: 419 SILIKAECISQGAKLLKKACLQGHEPDSKSLLSILDAYETTGKHEEGLSLLQFI 472



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 135/278 (48%), Gaps = 4/278 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
            V+ ++ ++  +A+    +D  ++L  M    + PD+V+   L++  +K+G L     AF
Sbjct: 62  TVQVFNAMMGVYARSGRFDDVRQLLDAMRGQELEPDLVSFNTLINARAKSGCLAPGS-AF 120

Query: 316 ESL---RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           + L   R  G +PD   YN++I A          +++ + M+ S        Y A++   
Sbjct: 121 DLLLEVRQVGLRPDVITYNTLISACSQGSNLDDAVAVFEEMMASECRPDLWTYNAMVSVH 180

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            +CG  + A ++   +  + F+P   +   L+ A+ + GD D      + ++R G K D 
Sbjct: 181 GRCGKAQDAERMFRELVEKGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAGFKKDG 240

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               +MI  YGK   LD AL L  E+   G  P   TYTVL+D LG++  I++A ++L +
Sbjct: 241 ITYNTMIHMYGKMGRLDLALGLYDEMRALGCTPDAVTYTVLIDSLGKMDRISDAGKVLEE 300

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEA 530
           +++ G  P      +L   YA+ G  ++A++    + A
Sbjct: 301 MADAGLKPTLVTFSALICAYAKGGRREEAVRTFSHMVA 338



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/262 (21%), Positives = 113/262 (43%), Gaps = 35/262 (13%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E  +  N+  Y  +I    +     D E ++ +M   G  PD+     L+ MY+  GN
Sbjct: 720 MKEAGYLPNMHIYRSMISLLCRNKRYRDVELMVVEMERAGFEPDLTILNTLLLMYTGNGN 779

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI--------- 358
            D+  E + S+   G +P++  YN++I+ Y    +P+ G +L++ M   G+         
Sbjct: 780 FDKTVEVYHSILEAGLEPNEDTYNTLIVMYSRNLRPEEGFTLLNEMGKKGLTPKLESYKS 839

Query: 359 -----------ERSEE---------------IYLALLRSFAQCGDVRGAGQITNIMRIEE 392
                      E++E+               +Y  L++ +    +   A Q+   M+ + 
Sbjct: 840 LLAASGKAKLWEQAEQLFEEIRSKGYRLNRSLYHMLMKIYRDACNHSKAEQLLASMKEDG 899

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
            +PT+ +  +L+ +YG AG PD+A    + +     +      +++  AY K    +  +
Sbjct: 900 IEPTIATMHILMTSYGTAGHPDEAEKVLNSLKSSSLEVSTLPYSTVFNAYLKNGDYNLGI 959

Query: 453 NLLLELEKDGFEPGPATYTVLV 474
             LLE++ DG +P    +T  +
Sbjct: 960 TKLLEMKADGVKPDHQVWTCFI 981



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 127/287 (44%), Gaps = 16/287 (5%)

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A + F  ++  G +P +K+Y SMI AY   G P+    L+D  + SGI  S  I  + + 
Sbjct: 538 ASQVFSDMQFIGIEPSRKIYESMISAYCKLGFPETAHQLMDEAVQSGI--SLNILSSRVT 595

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLES--CTLLVEAYGQAGDPDQARSNFDYMIRLGH 428
                G ++      N ++  + +P+++      L+ AY ++G  + AR+ FD MI  G 
Sbjct: 596 MIEAYGKIKLWQHAENFVKGLKQEPSIDRRIWNALIHAYAESGLYEHARAVFDIMIEKGP 655

Query: 429 KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQ 488
            P       M+ A      LD+   ++ EL+  GF+   +T  +++D   +   I E  +
Sbjct: 656 LPTIDSVNGMMRALIIDGRLDELYVIVQELQDMGFKISKSTVILMLDAFTKAGDIFEVMK 715

Query: 489 LLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLL 548
           +   + E G  P   I  S+  +  R     K  + +  +  + E+ G +    I+N LL
Sbjct: 716 IYNGMKEAGYLPNMHIYRSMISLLCR----NKRYRDVELMVVEMERAGFEPDLTILNTLL 771

Query: 549 A-----GGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQP 590
                 G F +  +  H ++EA G   +E     LI    ++R  +P
Sbjct: 772 LMYTGNGNFDKTVEVYHSILEA-GLEPNEDTYNTLIV--MYSRNLRP 815



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 122/306 (39%), Gaps = 16/306 (5%)

Query: 258 RDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFES 317
           R ++ LI A+A+    E A  +   M E G +P I +   ++      G LD      + 
Sbjct: 625 RIWNALIHAYAESGLYEHARAVFDIMIEKGPLPTIDSVNGMMRALIIDGRLDELYVIVQE 684

Query: 318 LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
           L+  GF+  K     M+ A+  AG     M + + M  +G   +  IY +++    +   
Sbjct: 685 LQDMGFKISKSTVILMLDAFTKAGDIFEVMKIYNGMKEAGYLPNMHIYRSMISLLCRNKR 744

Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
            R    +   M    F+P L     L+  Y   G+ D+    +  ++  G +P++    +
Sbjct: 745 YRDVELMVVEMERAGFEPDLTILNTLLLMYTGNGNFDKTVEVYHSILEAGLEPNEDTYNT 804

Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           +I  Y +    ++   LL E+ K G  P   +Y  L+   G+ +L  +AEQL  +I   G
Sbjct: 805 LIVMYSRNLRPEEGFTLLNEMGKKGLTPKLESYKSLLAASGKAKLWEQAEQLFEEIRSKG 864

Query: 498 EAPPFKIQVSLCDMYARAGIEKKALQALG----------------FLEAKKEQMGPDDFE 541
                 +   L  +Y  A    KA Q L                  + +      PD+ E
Sbjct: 865 YRLNRSLYHMLMKIYRDACNHSKAEQLLASMKEDGIEPTIATMHILMTSYGTAGHPDEAE 924

Query: 542 RIINGL 547
           +++N L
Sbjct: 925 KVLNSL 930



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 86/186 (46%), Gaps = 11/186 (5%)

Query: 208  SPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAH 267
            +P L  +K LL  S         +L EQ  QL+ ++       + ++ N   Y  L+  +
Sbjct: 831  TPKLESYKSLLAASGKA------KLWEQAEQLFEEI-----RSKGYRLNRSLYHMLMKIY 879

Query: 268  AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK 327
                    AE++L  M E+GI P I T  +L+  Y  AG+ D A++   SL+S   +   
Sbjct: 880  RDACNHSKAEQLLASMKEDGIEPTIATMHILMTSYGTAGHPDEAEKVLNSLKSSSLEVST 939

Query: 328  KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNI 387
              Y+++  AY+  G   LG++ +  M   G++   +++   +R+ + C     A  + N 
Sbjct: 940  LPYSTVFNAYLKNGDYNLGITKLLEMKADGVKPDHQVWTCFIRAASLCERTADAILLLNS 999

Query: 388  MRIEEF 393
            +R  EF
Sbjct: 1000 LRDCEF 1005



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 55/261 (21%), Positives = 107/261 (40%), Gaps = 1/261 (0%)

Query: 263 LIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG 322
           +I+A+ K    + AE  +K + +   + D      L+H Y+++G  + A+  F+ +   G
Sbjct: 596 MIEAYGKIKLWQHAENFVKGLKQEPSI-DRRIWNALIHAYAESGLYEHARAVFDIMIEKG 654

Query: 323 FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAG 382
             P     N M+ A +  G+      +V  +   G + S+   + +L +F + GD+    
Sbjct: 655 PLPTIDSVNGMMRALIIDGRLDELYVIVQELQDMGFKISKSTVILMLDAFTKAGDIFEVM 714

Query: 383 QITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAY 442
           +I N M+   + P +     ++    +             M R G +PD     +++  Y
Sbjct: 715 KIYNGMKEAGYLPNMHIYRSMISLLCRNKRYRDVELMVVEMERAGFEPDLTILNTLLLMY 774

Query: 443 GKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPF 502
                 DK + +   + + G EP   TY  L+    R     E   LL ++ + G  P  
Sbjct: 775 TGNGNFDKTVEVYHSILEAGLEPNEDTYNTLIVMYSRNLRPEEGFTLLNEMGKKGLTPKL 834

Query: 503 KIQVSLCDMYARAGIEKKALQ 523
           +   SL     +A + ++A Q
Sbjct: 835 ESYKSLLAASGKAKLWEQAEQ 855



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 74/375 (19%), Positives = 156/375 (41%), Gaps = 19/375 (5%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           ++P R+ ++ +LD +               +  + ++ +   Y  ++ A AK N  ++ E
Sbjct: 341 VKPDRLAYLVMLDIIARSGDMRKLMALYQTMMNDGYRPDNALYQVMLAALAKGNEYDEIE 400

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
            +++ M     +   + S++L+    KA  + +  +  +     G +PD K   S++ AY
Sbjct: 401 AVVQDMEVVCQMNPQLVSSILI----KAECISQGAKLLKKACLQGHEPDSKSLLSILDAY 456

Query: 338 VNAGQPKLGMSLVDMM---ITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
              G+ + G+SL+  +   + S      E  + LL    +   +  A Q  + M++ +  
Sbjct: 457 ETTGKHEEGLSLLQFIREHVPSSCNLISECSIMLL---CKNQKIAAAMQEYSSMQMLKCG 513

Query: 395 PTLESCTL---LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
              + C L   L+    +A    +A   F  M  +G +P  +   SMI+AY K    + A
Sbjct: 514 SFGQDCNLYEYLITCLEEAEFFPEASQVFSDMQFIGIEPSRKIYESMISAYCKLGFPETA 573

Query: 452 LNLLLELEKDGFEPGPATYTV-LVDWLGRLQLINEAEQLLGKISELGEAPPF--KIQVSL 508
             L+ E  + G      +  V +++  G+++L   AE     +  L + P    +I  +L
Sbjct: 574 HQLMDEAVQSGISLNILSSRVTMIEAYGKIKLWQHAENF---VKGLKQEPSIDRRIWNAL 630

Query: 509 CDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
              YA +G+ + A      +  K      D    ++  L+  G L +   +   ++  GF
Sbjct: 631 IHAYAESGLYEHARAVFDIMIEKGPLPTIDSVNGMMRALIIDGRLDELYVIVQELQDMGF 690

Query: 569 AASERLKVALISSQT 583
             S+   + ++ + T
Sbjct: 691 KISKSTVILMLDAFT 705


>gi|356540375|ref|XP_003538665.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
           chloroplastic-like [Glycine max]
          Length = 1476

 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 120/248 (48%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           Q ++  Y+ +I  + +      AE + K++   G  PD VT   L++ +S+ GN ++ ++
Sbjct: 353 QPDLWTYNAMISVYGRCARARKAEELFKELESKGFFPDAVTYNSLLYAFSREGNTEKVRD 412

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
             E +   GF  D+  YN++I  Y   G+    M +   M +SG       Y  L+ S  
Sbjct: 413 ICEEMVKRGFGQDEMTYNTIIHMYGKQGRHDQAMQIYRDMKSSGRNPDAVTYTVLIDSLG 472

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           +   V  A  + + M     +PTL + + L+ AY +AG  ++A   F+ M R G KPD  
Sbjct: 473 KASKVEEAANVMSEMLDAGVKPTLHTYSALICAYAKAGKREEAEETFNCMRRSGIKPDRL 532

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
             + M+  + + N + KA+ L  E+ ++GF P    Y V++  L R  + +  ++++  +
Sbjct: 533 AYSVMLDFFLRFNEMKKAMGLYHEMIREGFTPDNGLYEVMMHALVRENMWDVVDRIIRDM 592

Query: 494 SELGEAPP 501
            EL    P
Sbjct: 593 EELSGMNP 600



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 89/418 (21%), Positives = 186/418 (44%), Gaps = 42/418 (10%)

Query: 190 KCKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAE---- 245
           + K +TD IL+L+ EE  + +L E +  + P+  D+  ++  + +QN Q   ++ E    
Sbjct: 150 RVKYLTDTILALKSEEFVAGVLEERRVQMTPT--DFCFVVKWVGQQNWQRALELYECLNL 207

Query: 246 ------------------------------LVLSEESFQTNVRDYSKLIDAHAKENCLED 275
                                            +E S    V+ Y+ ++  +A+      
Sbjct: 208 RHWYAPNARMVATILGVLGKANQEALAVEIFARAESSVGDTVQVYNAMMGVYARNGRFSK 267

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNL--DRAKEAFESLRSHGFQPDKKVYNSM 333
            + +L  M E G VPD+V+   L++   K+G +  + A +    +R  G +PD   YN++
Sbjct: 268 VKELLDLMRERGCVPDLVSFNTLINARMKSGAMEPNLALQLLNEVRRSGIRPDIITYNTL 327

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           I A       +  +++   M +   +     Y A++  + +C   R A ++   +  + F
Sbjct: 328 ISACSRESNLEEAVAVFSDMESHRCQPDLWTYNAMISVYGRCARARKAEELFKELESKGF 387

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
            P   +   L+ A+ + G+ ++ R   + M++ G   D+    ++I  YGK+   D+A+ 
Sbjct: 388 FPDAVTYNSLLYAFSREGNTEKVRDICEEMVKRGFGQDEMTYNTIIHMYGKQGRHDQAMQ 447

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
           +  +++  G  P   TYTVL+D LG+   + EA  ++ ++ + G  P      +L   YA
Sbjct: 448 IYRDMKSSGRNPDAVTYTVLIDSLGKASKVEEAANVMSEMLDAGVKPTLHTYSALICAYA 507

Query: 514 RAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
           +AG  ++A +    +  ++  + PD   +  +++  L    ++ A  ++  M  +GF 
Sbjct: 508 KAGKREEAEETFNCM--RRSGIKPDRLAYSVMLDFFLRFNEMKKAMGLYHEMIREGFT 563



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/267 (22%), Positives = 119/267 (44%), Gaps = 35/267 (13%)

Query: 273  LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
            + D E +L +M E G  PD+     ++ +Y    +       ++ ++    +PD++ YN+
Sbjct: 930  VRDVETMLCEMEEAGFQPDLQICNSILKLYLGIEDFKSMGIIYQKIQDASLKPDEETYNT 989

Query: 333  MIMAYVNAGQPKLGMSLVDMMITSGIE--------------------RSEEI-------- 364
            +I+ Y    +P+ G SL++ M + G+E                    ++EE+        
Sbjct: 990  LIIMYCRDRRPEEGFSLMNKMRSLGLEPKLDTYRSLITAFNKQRMYEQAEELFEELRSNG 1049

Query: 365  -------YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
                   Y  +++++   GD R A  +  IM+    +PT+ +  LL+ +YG++G P++A 
Sbjct: 1050 YKLDRAFYHLMMKTYRTSGDHRKAENLLAIMKESGIEPTISTMHLLMVSYGKSGQPEEAE 1109

Query: 418  SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
            +    +   G   D    +S+I AY KK      +  L E+++ G EP    +T  +   
Sbjct: 1110 NVLKNLRTTGVVLDTLPYSSVIDAYLKKGDFKAGIEKLTEMKEAGIEPDHRIWTCFIRAA 1169

Query: 478  GRLQLINEAEQLLGKISELGEAPPFKI 504
               +  NEA  LL  + + G   P ++
Sbjct: 1170 TLSEGTNEAIVLLNALQDAGFDLPIRL 1196



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 108/219 (49%), Gaps = 1/219 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L  + F  +   Y+ L+ A ++E   E    I ++M + G   D +T   ++HMY K G 
Sbjct: 382 LESKGFFPDAVTYNSLLYAFSREGNTEKVRDICEEMVKRGFGQDEMTYNTIIHMYGKQGR 441

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            D+A + +  ++S G  PD   Y  +I +   A + +   +++  M+ +G++ +   Y A
Sbjct: 442 HDQAMQIYRDMKSSGRNPDAVTYTVLIDSLGKASKVEEAANVMSEMLDAGVKPTLHTYSA 501

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+ ++A+ G    A +  N MR    +P   + +++++ + +  +  +A   +  MIR G
Sbjct: 502 LICAYAKAGKREEAEETFNCMRRSGIKPDRLAYSVMLDFFLRFNEMKKAMGLYHEMIREG 561

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEK-DGFEP 465
             PD+     M+ A  ++N+ D    ++ ++E+  G  P
Sbjct: 562 FTPDNGLYEVMMHALVRENMWDVVDRIIRDMEELSGMNP 600



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 56/270 (20%), Positives = 106/270 (39%)

Query: 260  YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
            ++ LI A+A   C E A  I   M  +G  P + +   L+        L+      + L+
Sbjct: 812  WNALIHAYAFSGCYERARAIFNTMMRDGPSPTVDSVNGLLQALIVDRRLNELYVVIQELQ 871

Query: 320  SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
              G +  K      + A+  AG       + + M  +G   +  +Y  +LR   +C  VR
Sbjct: 872  DMGLKISKSSILLTLEAFAQAGNLFEVQKIYNGMKAAGYFPTMHVYRIMLRLLCKCKRVR 931

Query: 380  GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
                +   M    FQP L+ C  +++ Y    D       +  +     KPD+    ++I
Sbjct: 932  DVETMLCEMEEAGFQPDLQICNSILKLYLGIEDFKSMGIIYQKIQDASLKPDEETYNTLI 991

Query: 440  AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
              Y +    ++  +L+ ++   G EP   TY  L+    + ++  +AE+L  ++   G  
Sbjct: 992  IMYCRDRRPEEGFSLMNKMRSLGLEPKLDTYRSLITAFNKQRMYEQAEELFEELRSNGYK 1051

Query: 500  PPFKIQVSLCDMYARAGIEKKALQALGFLE 529
                    +   Y  +G  +KA   L  ++
Sbjct: 1052 LDRAFYHLMMKTYRTSGDHRKAENLLAIMK 1081



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 72/370 (19%), Positives = 148/370 (40%), Gaps = 44/370 (11%)

Query: 241  FKVAELVLSEESF---QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIV--PDIVTS 295
            F VA  + S+  F   +++   Y  ++  + + +  E A  +L    +NGI+   DI   
Sbjct: 718  FDVASQIFSDMRFNGVESSECLYQGMVSVYCRMDLPETAHHLLYHAEKNGIILDNDISVY 777

Query: 296  TVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMIT 355
              +V  Y K     +A+    SLR    + D+KV+N++I AY  +G  +   ++ + M+ 
Sbjct: 778  IDIVETYGKLKIWQKAESLVGSLRQRCSKMDRKVWNALIHAYAFSGCYERARAIFNTMMR 837

Query: 356  SGIE-----------------RSEEIYLAL------------------LRSFAQCGDVRG 380
             G                   R  E+Y+ +                  L +FAQ G++  
Sbjct: 838  DGPSPTVDSVNGLLQALIVDRRLNELYVVIQELQDMGLKISKSSILLTLEAFAQAGNLFE 897

Query: 381  AGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIA 440
              +I N M+   + PT+    +++    +        +    M   G +PD +   S++ 
Sbjct: 898  VQKIYNGMKAAGYFPTMHVYRIMLRLLCKCKRVRDVETMLCEMEEAGFQPDLQICNSILK 957

Query: 441  AY-GKKNLLDKALNLLLELEKDG-FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
             Y G ++   K++ ++ +  +D   +P   TY  L+    R +   E   L+ K+  LG 
Sbjct: 958  LYLGIEDF--KSMGIIYQKIQDASLKPDEETYNTLIIMYCRDRRPEEGFSLMNKMRSLGL 1015

Query: 499  APPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQR 558
             P      SL   + +  + ++A +    L +   ++    +  ++      G  + A+ 
Sbjct: 1016 EPKLDTYRSLITAFNKQRMYEQAEELFEELRSNGYKLDRAFYHLMMKTYRTSGDHRKAEN 1075

Query: 559  VHGLMEAQGF 568
            +  +M+  G 
Sbjct: 1076 LLAIMKESGI 1085



 Score = 43.5 bits (101), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 20/90 (22%), Positives = 42/90 (46%)

Query: 247  VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
            ++ E   +  +     L+ ++ K    E+AE +LK +   G+V D +  + ++  Y K G
Sbjct: 1079 IMKESGIEPTISTMHLLMVSYGKSGQPEEAENVLKNLRTTGVVLDTLPYSSVIDAYLKKG 1138

Query: 307  NLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
            +     E    ++  G +PD +++   I A
Sbjct: 1139 DFKAGIEKLTEMKEAGIEPDHRIWTCFIRA 1168


>gi|242067235|ref|XP_002448894.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
 gi|241934737|gb|EES07882.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
          Length = 796

 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 144/314 (45%), Gaps = 4/314 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  Y+ +I+    E  ++ A  +   M + GI P++VT T+++    KA  +DRA+  F
Sbjct: 203 NLVSYNTVINGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAEGVF 262

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + +   G +P+   Y  +I  Y++ GQ K  + ++  M   G+E     Y  LL    + 
Sbjct: 263 QQMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGLLLDYLCKK 322

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G    A ++ + M  +  +P +    +++  Y   G   +  S  D M+  G  P+    
Sbjct: 323 GKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGNGISPNHYIF 382

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +  A+ KK ++ +A+++  ++ + G  P    Y  L+D L +L  +++AE    ++  
Sbjct: 383 NIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDAELKFNQMIN 442

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFL 553
            G AP   +  SL  +Y    I+K       F E   + + P+   F  I+  L   G +
Sbjct: 443 EGVAPNIVVFTSL--VYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTIMCNLCTEGRV 500

Query: 554 QDAQRVHGLMEAQG 567
             AQR+  LME  G
Sbjct: 501 MKAQRLIDLMERVG 514



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/352 (21%), Positives = 152/352 (43%), Gaps = 20/352 (5%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           ++  + N+  Y+ LI  +      ++  R+LK+M+ +G+ PD  T  +L+    K G   
Sbjct: 267 DKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGLLLDYLCKKGKCT 326

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A++ F+S+   G +PD  +Y  ++  Y   G      S +D+M+ +GI  +  I+  + 
Sbjct: 327 EARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGNGISPNHYIFNIVF 386

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
            +FA+   +  A  I N MR +   P + +   L++A  + G  D A   F+ MI  G  
Sbjct: 387 CAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDAELKFNQMINEGVA 446

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           P+     S++      +  +KA  L  E+   G  P    +  ++  L     + +A++L
Sbjct: 447 PNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTIMCNLCTEGRVMKAQRL 506

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLA 549
           +  +  +G  P      +L   +   G   +A + L  + +   +     +  +++G   
Sbjct: 507 IDLMERVGTRPDIISYNALIRGHCLVGKTDEASKLLDIMLSVGLKPNECTYNTLLHGYCR 566

Query: 550 GGFLQDAQRV--------------------HGLMEAQGFAASERLKVALISS 581
            G + DA  V                    HGL + + F+ ++ L + +I+S
Sbjct: 567 DGRIDDAYSVFQEMLSNGITPVVVTYNTILHGLFKTRRFSEAKELYLNMITS 618



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 68/328 (20%), Positives = 126/328 (38%), Gaps = 41/328 (12%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + ++    NV +Y+ LIDA  K   ++DAE    +M   G+ P+IV  T LV+       
Sbjct: 405 MRQQGLSPNVVNYATLIDALCKLGRVDDAELKFNQMINEGVAPNIVVFTSLVYGLCTIDK 464

Query: 308 LDRAKEAFESLRSHGFQP-----------------------------------DKKVYNS 332
            ++A E F  + + G  P                                   D   YN+
Sbjct: 465 WEKAGELFFEMVNQGIHPNVVFFNTIMCNLCTEGRVMKAQRLIDLMERVGTRPDIISYNA 524

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I  +   G+      L+D+M++ G++ +E  Y  LL  + + G +  A  +   M    
Sbjct: 525 LIRGHCLVGKTDEASKLLDIMLSVGLKPNECTYNTLLHGYCRDGRIDDAYSVFQEMLSNG 584

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P + +   ++    +     +A+  +  MI  G +        ++    K N +D+AL
Sbjct: 585 ITPVVVTYNTILHGLFKTRRFSEAKELYLNMITSGKQWSIYTYNIILNGLSKNNCVDEAL 644

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
            +   L     +    T+ +++  L +     +A  L   IS  G  P     V+   + 
Sbjct: 645 KMFQSLCSKDLQVDIITFNIMIGALLKDGRKEDAMNLFATISANGLVP----DVTTYRLI 700

Query: 513 ARAGIEKKALQALG--FLEAKKEQMGPD 538
           A   IE+ +L+     F E +K    P+
Sbjct: 701 AENLIEEGSLEEFDGMFSEMEKSGCAPN 728



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 122/284 (42%), Gaps = 12/284 (4%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           ++  Y+ LI  H      ++A ++L  M   G+ P+  T   L+H Y + G +D A   F
Sbjct: 518 DIISYNALIRGHCLVGKTDEASKLLDIMLSVGLKPNECTYNTLLHGYCRDGRIDDAYSVF 577

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + + S+G  P    YN+++       +      L   MITSG + S   Y  +L   ++ 
Sbjct: 578 QEMLSNGITPVVVTYNTILHGLFKTRRFSEAKELYLNMITSGKQWSIYTYNIILNGLSKN 637

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
             V  A ++   +  ++ Q  + +  +++ A  + G  + A + F  +   G  PD   T
Sbjct: 638 NCVDEALKMFQSLCSKDLQVDIITFNIMIGALLKDGRKEDAMNLFATISANGLVPDVT-T 696

Query: 436 ASMIAAYGKKNLLDKAL-----NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
             +IA    +NL+++        +  E+EK G  P       LV  L     I+ A   L
Sbjct: 697 YRLIA----ENLIEEGSLEEFDGMFSEMEKSGCAPNSLMLNFLVRRLLLRGDISRAGAYL 752

Query: 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKAL-QALGFL-EAKK 532
            KI E   +        L  +++R   + K+L +   FL EAKK
Sbjct: 753 SKIDEKNFSLEASTTSMLISLFSREEHQAKSLPEKYHFLNEAKK 796



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/269 (19%), Positives = 98/269 (36%), Gaps = 40/269 (14%)

Query: 288 IVPDIVTSTVLVHMYSKAGNLDRAKEAF-------------------------------- 315
           + PD+ T ++LV  + + G L+    AF                                
Sbjct: 90  VAPDVFTYSILVGCFCRMGRLEHGFAAFGLILKTGWRVNDVVVVNRLLKGLCDAKRVGEA 149

Query: 316 -----ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE---IYLA 367
                  +   G  P+   YN+++  + +  + +  + L+ MM    +         Y  
Sbjct: 150 MGVLLRRMSELGCTPNVVSYNTLLKGFCDENRAEEALELLHMMADGQVRSCPPNLVSYNT 209

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++  F   G V  A  +   M  +   P + + T++++   +A   D+A   F  MI  G
Sbjct: 210 VINGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAEGVFQQMIDKG 269

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            +P+      +I  Y       + + +L E+   G EP   TY +L+D+L +     EA 
Sbjct: 270 VRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGLLLDYLCKKGKCTEAR 329

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAG 516
           +L   +   G  P   I   +   YA  G
Sbjct: 330 KLFDSMIRKGIKPDVSIYGIILHGYATKG 358



 Score = 42.7 bits (99), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 36/167 (21%), Positives = 79/167 (47%), Gaps = 6/167 (3%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           Q ++  Y+ +++  +K NC+++A ++ + +    +  DI+T  +++    K G  + A  
Sbjct: 621 QWSIYTYNIILNGLSKNNCVDEALKMFQSLCSKDLQVDIITFNIMIGALLKDGRKEDAMN 680

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            F ++ ++G  PD   Y  +    +  G  +    +   M  SG   +  +   L+R   
Sbjct: 681 LFATISANGLVPDVTTYRLIAENLIEEGSLEEFDGMFSEMEKSGCAPNSLMLNFLVRRLL 740

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCT--LLVEAYGQAGDPDQARS 418
             GD+  AG    + +I+E   +LE+ T  +L+  + +  +  QA+S
Sbjct: 741 LRGDISRAGAY--LSKIDEKNFSLEASTTSMLISLFSR--EEHQAKS 783


>gi|413922833|gb|AFW62765.1| hypothetical protein ZEAMMB73_408366 [Zea mays]
          Length = 820

 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 118/234 (50%), Gaps = 4/234 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E  ++   R Y+ L+D   +E   E+AE+IL +M ++G++P +VT T++V+ Y + G 
Sbjct: 256 MKELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTIVVNAYCREGR 315

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A   FES+R  G +P+   YN+++  + NAG+    M+L+D M   G+E     Y  
Sbjct: 316 MSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECGVEPDVVTYNL 375

Query: 368 LLRSFAQC--GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
           L+R   QC  G +  A ++  +M          +  +L++A  + G  D+A S FD +  
Sbjct: 376 LIR--GQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEY 433

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
            G +P+     ++I    K    D A   L  +   G+ P   TY+  ++ L +
Sbjct: 434 RGIRPNSVTFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYTYSPFIENLCK 487



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 84/369 (22%), Positives = 151/369 (40%), Gaps = 15/369 (4%)

Query: 201 LEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDY 260
           + +   P+P  A +  L++        L  R   ++ Q Y  +    +    ++ +   +
Sbjct: 119 MYRHAPPAPTGATYNALIRA-------LCRRADLRHAQRYLSL----MVRSGWRPDAFTF 167

Query: 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320
           + LI  + +   LE A  +  KM   G   D V+   L+  + +AG +D A E F  +  
Sbjct: 168 NSLILGYCRTQQLEVAHDLFCKMPFRGFSQDAVSYAALIEGFCEAGRIDEALELFREMT- 226

Query: 321 HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRG 380
              QPD   + +++    +AG+ + G+ ++  M   G   +   Y AL+  + +      
Sbjct: 227 ---QPDMYTHAALVKGLCDAGRGEEGLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEE 283

Query: 381 AGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIA 440
           A +I N M      P + +CT++V AY + G    A   F+ M   G +P+     +++ 
Sbjct: 284 AEKILNEMFDSGLMPCVVTCTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQ 343

Query: 441 AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
            +     + KA+ LL ++ + G EP   TY +L+        I  A +LL  +   G A 
Sbjct: 344 GFCNAGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAA 403

Query: 501 PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVH 560
                  L D   + G   +A      LE +  +     F  +INGL   G    A    
Sbjct: 404 DQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFL 463

Query: 561 GLMEAQGFA 569
             M + G+A
Sbjct: 464 ENMISAGYA 472



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 124/295 (42%), Gaps = 10/295 (3%)

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL 349
           P   T   L+    +  +L  A+     +   G++PD   +NS+I+ Y    Q ++   L
Sbjct: 127 PTGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLEVAHDL 186

Query: 350 VDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409
              M   G  +    Y AL+  F + G +  A ++      E  QP + +   LV+    
Sbjct: 187 FCKMPFRGFSQDAVSYAALIEGFCEAGRIDEALELFR----EMTQPDMYTHAALVKGLCD 242

Query: 410 AGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPAT 469
           AG  ++       M  LG +P  R  A+++  + ++   ++A  +L E+   G  P   T
Sbjct: 243 AGRGEEGLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVT 302

Query: 470 YTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLE 529
            T++V+   R   ++ A ++   +   G  P      ++   +  AG   K  +A+  L+
Sbjct: 303 CTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAG---KVYKAMALLD 359

Query: 530 AKKEQ-MGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
             +E  + PD   +  +I G    G +  A R+  LME  G AA +     LI +
Sbjct: 360 QMRECGVEPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDA 414



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 87/213 (40%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LIDA  K   +++A  +   +   GI P+ VT   +++   KAG  D A    E++ 
Sbjct: 408 YNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFLENMI 467

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           S G+ PD   Y+  I         + G+  +D M+   ++ S   Y  ++       +  
Sbjct: 468 SAGYAPDTYTYSPFIENLCKTKGSQEGLFFIDEMLQKDVKPSTVNYTIVINRLFNERNYG 527

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A +I   M  +   P + + T  V AY   G  D+A +    M +     D     ++I
Sbjct: 528 LATRIWGQMVSQGCSPDVVTYTTSVRAYCNEGRLDEAENVVTEMKKCRTIVDAMAYNTLI 587

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTV 472
             +      D+A+ +L  +      P   T+ +
Sbjct: 588 DGHTSIGQTDRAVTILKHMTGVASMPNHFTFFI 620



 Score = 46.6 bits (109), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 52/260 (20%), Positives = 102/260 (39%), Gaps = 25/260 (9%)

Query: 246 LVLSEESFQTNVR----DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM 301
           L   +E  Q +V+    +Y+ +I+    E     A RI  +M   G  PD+VT T  V  
Sbjct: 495 LFFIDEMLQKDVKPSTVNYTIVINRLFNERNYGLATRIWGQMVSQGCSPDVVTYTTSVRA 554

Query: 302 YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMI-TSGIER 360
           Y   G LD A+     ++      D   YN++I  + + GQ    ++++  M   + +  
Sbjct: 555 YCNEGRLDEAENVVTEMKKCRTIVDAMAYNTLIDGHTSIGQTDRAVTILKHMTGVASMPN 614

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
               ++ L     +        + T++ +  E     E    L E   +   P  AR+  
Sbjct: 615 HFTFFILLRHLLQRRLAEHVPLKATSVWKTIELADVFE----LFELMKKNSVPSSARTYL 670

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
                           S++  + ++  LD+  +L+  ++++        Y  LV+   +L
Sbjct: 671 ----------------SILEGFSEERRLDEVTSLVSLMKEENLPLNEDIYNALVNCFCKL 714

Query: 481 QLINEAEQLLGKISELGEAP 500
           ++ ++A  LL  +   G  P
Sbjct: 715 RMYSDAWALLCSMIGHGFLP 734



 Score = 40.8 bits (94), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 57/310 (18%), Positives = 116/310 (37%), Gaps = 53/310 (17%)

Query: 218 LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           ++PS +++  +++RL  E+N  L  ++   ++S+     +V  Y+  + A+  E  L++A
Sbjct: 506 VKPSTVNYTIVINRLFNERNYGLATRIWGQMVSQGC-SPDVVTYTTSVRAYCNEGRLDEA 564

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK------------------------ 312
           E ++ +M +   + D +    L+  ++  G  DRA                         
Sbjct: 565 ENVVTEMKKCRTIVDAMAYNTLIDGHTSIGQTDRAVTILKHMTGVASMPNHFTFFILLRH 624

Query: 313 ---------------------------EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKL 345
                                      E FE ++ +      + Y S++  +    +   
Sbjct: 625 LLQRRLAEHVPLKATSVWKTIELADVFELFELMKKNSVPSSARTYLSILEGFSEERRLDE 684

Query: 346 GMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVE 405
             SLV +M    +  +E+IY AL+  F +      A  +   M    F P L     L+ 
Sbjct: 685 VTSLVSLMKEENLPLNEDIYNALVNCFCKLRMYSDAWALLCSMIGHGFLPNLIFYQYLLS 744

Query: 406 AYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
                G  D+A+  F       +  D+     +I  + +K   D   +++  LE+   +P
Sbjct: 745 GLTAEGQADRAKEIFRSSRWKEYNTDEIVWKVIIDGFIRKGHADMCHDMISMLEQMKCKP 804

Query: 466 GPATYTVLVD 475
              TY +L +
Sbjct: 805 SDETYAMLTE 814


>gi|357481229|ref|XP_003610900.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512235|gb|AES93858.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1508

 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/364 (23%), Positives = 162/364 (44%), Gaps = 40/364 (10%)

Query: 190 KCKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLS 249
           + K +TD+ILSL+ +E    +L E + L  P+  D+  ++  + + + Q   ++ E +  
Sbjct: 165 RVKFLTDRILSLKCDEFVGHVLEEHRVLFTPT--DFCFVVKSVGQSSWQRALELYECLTM 222

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           ++ + TN R  + ++    K N    A  I  K  E+ I   +     ++ +Y++ GN +
Sbjct: 223 QQWYATNARMVATILSVLGKANQEGIAVEIFAKA-ESVIADTVQVYNAMMGVYARNGNFE 281

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVN--AGQPKLGMSLVDMM-------------- 353
           +  E F  +R  G +PD   +N++I A V   A    L + L+D +              
Sbjct: 282 KVNEMFNLMRERGCEPDIVSFNTLINAKVKSCATVSGLAIELLDEVGKFGLRPDIITYNT 341

Query: 354 ITSGIERSEEI---------------------YLALLRSFAQCGDVRGAGQITNIMRIEE 392
           + S   R   +                     Y A++  + +CG    A  +   ++   
Sbjct: 342 LISACSRESNLKEAIGVFSHMESNRCQPDLWTYNAMISVYGRCGFALKAEHLFEKLKSNG 401

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
           F P   +   L+ A+ + G+ ++ R   + M+++G   D+    ++I  YGK    D+AL
Sbjct: 402 FSPDAVTYNSLLYAFSKEGNTEKVRDISEEMVKMGFGKDEMTYNTIIHMYGKHGRHDEAL 461

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
            L  +++  G  P   TYTVL+D LG+   I EA +++ ++ + G  P      +L   Y
Sbjct: 462 RLYRDMKSSGRNPDAVTYTVLIDLLGKASKIEEASKVMSEMLDAGVKPTLHTYSALICAY 521

Query: 513 ARAG 516
           A+ G
Sbjct: 522 AKVG 525



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 131/292 (44%), Gaps = 2/292 (0%)

Query: 218 LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L+P  I +  L+    RE N +    V   + S    Q ++  Y+ +I  + +      A
Sbjct: 332 LRPDIITYNTLISACSRESNLKEAIGVFSHMESNRC-QPDLWTYNAMISVYGRCGFALKA 390

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
           E + +K+  NG  PD VT   L++ +SK GN ++ ++  E +   GF  D+  YN++I  
Sbjct: 391 EHLFEKLKSNGFSPDAVTYNSLLYAFSKEGNTEKVRDISEEMVKMGFGKDEMTYNTIIHM 450

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           Y   G+    + L   M +SG       Y  L+    +   +  A ++ + M     +PT
Sbjct: 451 YGKHGRHDEALRLYRDMKSSGRNPDAVTYTVLIDLLGKASKIEEASKVMSEMLDAGVKPT 510

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           L + + L+ AY + G   +A   F+ M   G K D    + M+  + + N + KA  L  
Sbjct: 511 LHTYSALICAYAKVGRRVEAEETFNRMRESGIKADHLAYSVMLDFFLRFNEIKKAAALYQ 570

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSL 508
           E+ + GF P    Y V++  L R  + +  E+++    ELG   P  I   L
Sbjct: 571 EMIEAGFTPDTGLYEVMLPALVRENMGDVIERVVQDTKELGSMNPHDISSVL 622



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/267 (21%), Positives = 112/267 (41%), Gaps = 35/267 (13%)

Query: 273  LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
            + D   +L +M E G  PD+     ++ +YS           ++ ++  G  PD++ YN+
Sbjct: 945  VRDVRVMLSEMGEAGFKPDLQIFNSVLKLYSSIEEFQNMGVIYQMIQDAGLAPDEETYNT 1004

Query: 333  MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ------------------ 374
            +I  Y    +P+ G+SL+  M + G+E   + Y +++ +F++                  
Sbjct: 1005 LITMYCRDHRPEEGLSLMHKMKSLGLEPKRDTYRSMIAAFSKQQLYDQAEELFEELRSNG 1064

Query: 375  -----------------CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
                              GD + A  +  IM+    +P   +  LL+ +YG++G P++A 
Sbjct: 1065 YKLDRSFYHLMMKMYRTSGDHQKAENLLEIMKEAGIEPNTATMHLLMVSYGKSGQPEEAD 1124

Query: 418  SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
                 +  +G   D    +S+I AY KK      +  L E+++   EP    +T  +   
Sbjct: 1125 RILKNLRTMGAVLDTLPYSSVIDAYLKKGDAKAGIEKLTEMKEAAIEPDHRIWTCFIRAA 1184

Query: 478  GRLQLINEAEQLLGKISELGEAPPFKI 504
                 +N+A  LL  +  +G   P ++
Sbjct: 1185 SLSGEVNDANNLLNALQAVGFDLPIRL 1211



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/296 (20%), Positives = 125/296 (42%), Gaps = 39/296 (13%)

Query: 263  LIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG 322
            +I+ + K    + AE I++ + +     D      L+H Y+ +G  +RA+  F ++   G
Sbjct: 795  IIETYGKLKMWQSAESIVENLRQRCSKMDRKVWNALIHAYAFSGCYERARAIFNTMMREG 854

Query: 323  FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAG 382
              P  +  N ++ A +  G+      ++  +    ++ S+   L +L +FAQ G++    
Sbjct: 855  PSPTVESVNGLLQALIVDGRLSELYVVIQELQDMDLKISKSSILLMLEAFAQAGNLFEVQ 914

Query: 383  QITNIMRIEEFQPTLESCTLLV----------------EAYGQAG-DPDQARSNFDYMIR 425
            ++ N M+   + PT+    L++                   G+AG  PD     F+ +++
Sbjct: 915  KVYNGMKAAGYFPTMHLYRLMIGLLCRFKRVRDVRVMLSEMGEAGFKPDL--QIFNSVLK 972

Query: 426  L--------------------GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
            L                    G  PD+    ++I  Y + +  ++ L+L+ +++  G EP
Sbjct: 973  LYSSIEEFQNMGVIYQMIQDAGLAPDEETYNTLITMYCRDHRPEEGLSLMHKMKSLGLEP 1032

Query: 466  GPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKA 521
               TY  ++    + QL ++AE+L  ++   G          +  MY  +G  +KA
Sbjct: 1033 KRDTYRSMIAAFSKQQLYDQAEELFEELRSNGYKLDRSFYHLMMKMYRTSGDHQKA 1088



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 51/253 (20%), Positives = 101/253 (39%), Gaps = 37/253 (14%)

Query: 298 LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP-------------- 343
           L+H  +K+   D A + F  +R +G +P + +Y SM+  Y   G P              
Sbjct: 723 LIHECTKSEQFDIASQLFSDMRFNGVEPSECLYQSMVSVYCRIGFPETAQHLLYHAEKND 782

Query: 344 ----KLGMSLVDMMITSG-----------IER--------SEEIYLALLRSFAQCGDVRG 380
                + + ++D++ T G           +E           +++ AL+ ++A  G    
Sbjct: 783 IILDNVTVHIIDIIETYGKLKMWQSAESIVENLRQRCSKMDRKVWNALIHAYAFSGCYER 842

Query: 381 AGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIA 440
           A  I N M  E   PT+ES   L++A    G   +       +  +  K        M+ 
Sbjct: 843 ARAIFNTMMREGPSPTVESVNGLLQALIVDGRLSELYVVIQELQDMDLKISKSSILLMLE 902

Query: 441 AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
           A+ +   L +   +   ++  G+ P    Y +++  L R + + +   +L ++ E G  P
Sbjct: 903 AFAQAGNLFEVQKVYNGMKAAGYFPTMHLYRLMIGLLCRFKRVRDVRVMLSEMGEAGFKP 962

Query: 501 PFKIQVSLCDMYA 513
             +I  S+  +Y+
Sbjct: 963 DLQIFNSVLKLYS 975



 Score = 43.9 bits (102), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 114/260 (43%), Gaps = 25/260 (9%)

Query: 298 LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG 357
           L+ +  KAG LD A E + S    G      +Y S+I     + Q  +   L   M  +G
Sbjct: 688 LIIILCKAGKLDAALEEYRSRGGLGTFRSCTMYESLIHECTKSEQFDIASQLFSDMRFNG 747

Query: 358 IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL----LVEAYGQAGDP 413
           +E SE +Y +++  + + G    A  +  +   E+    L++ T+    ++E YG+    
Sbjct: 748 VEPSECLYQSMVSVYCRIGFPETAQHL--LYHAEKNDIILDNVTVHIIDIIETYGKLKMW 805

Query: 414 DQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVL 473
             A S  + + +   K D +   ++I AY      ++A  +   + ++G  P P   +V 
Sbjct: 806 QSAESIVENLRQRCSKMDRKVWNALIHAYAFSGCYERARAIFNTMMREG--PSPTVESV- 862

Query: 474 VDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE 533
               G LQ    A  + G++SEL     + +   L DM  +  I K ++  L  LEA  +
Sbjct: 863 ---NGLLQ----ALIVDGRLSEL-----YVVIQELQDMDLK--ISKSSI--LLMLEAFAQ 906

Query: 534 QMGPDDFERIINGLLAGGFL 553
                + +++ NG+ A G+ 
Sbjct: 907 AGNLFEVQKVYNGMKAAGYF 926



 Score = 40.4 bits (93), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 24/113 (21%), Positives = 51/113 (45%)

Query: 247  VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
            ++ E   + N      L+ ++ K    E+A+RILK +   G V D +  + ++  Y K G
Sbjct: 1094 IMKEAGIEPNTATMHLLMVSYGKSGQPEEADRILKNLRTMGAVLDTLPYSSVIDAYLKKG 1153

Query: 307  NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
            +     E    ++    +PD +++   I A   +G+     +L++ +   G +
Sbjct: 1154 DAKAGIEKLTEMKEAAIEPDHRIWTCFIRAASLSGEVNDANNLLNALQAVGFD 1206


>gi|302762967|ref|XP_002964905.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
 gi|300167138|gb|EFJ33743.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
          Length = 773

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/378 (24%), Positives = 150/378 (39%), Gaps = 55/378 (14%)

Query: 198 ILSLEKEEDPSPLLAEWKELLQPSR---IDWINLLDRLREQNTQLYFKVAELVLSEESFQ 254
           +L+  K+E   P L  +  +L       +DW  LL+   +             +  E  Q
Sbjct: 139 LLARMKKEQVEPNLITYNTVLNACSKGGLDWEGLLNLFAQ-------------MRHEGIQ 185

Query: 255 TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA 314
            ++  Y+ L+ A +    +E A  + K MNE+G+V D VT   LV  ++ +  L R +E 
Sbjct: 186 PDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAVTYKSLVDTFAGSNQLGRVEEL 245

Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
              +   G  PD   YNS+I AY +AG                                 
Sbjct: 246 LREMEDEGNPPDIAGYNSLIEAYADAG--------------------------------- 272

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
             +V GA  +   M+     P +E+ + L+  YG  G  +Q RS F  M  L   P    
Sbjct: 273 --NVHGAAGVFKQMQRGGCAPDVETYSTLLRIYGNQGCFEQVRSLFSDMKDLSTPPTVAT 330

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
             S+I  +G+     +++NL  ++   G +P  ATY+ L+   GR  L  EA ++   + 
Sbjct: 331 YNSLIQVFGEGGYFQESINLFHDMVDSGVKPDDATYSALLSVCGRGGLTREAAKIHQHML 390

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP--DDFERIINGLLAGGF 552
                P  +    L   Y +  + K AL  + +   ++  + P    ++ +I G   GG 
Sbjct: 391 TNESTPSLEASAGLISSYGKMAMYKDAL--VSYYRIREAGLDPQVSAYDALIQGYAKGGL 448

Query: 553 LQDAQRVHGLMEAQGFAA 570
             +A      M   GF A
Sbjct: 449 YVEAGSTLYAMNKAGFQA 466



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 128/278 (46%), Gaps = 9/278 (3%)

Query: 242 KVAELV--LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLV 299
           +V EL+  + +E    ++  Y+ LI+A+A    +  A  + K+M   G  PD+ T + L+
Sbjct: 241 RVEELLREMEDEGNPPDIAGYNSLIEAYADAGNVHGAAGVFKQMQRGGCAPDVETYSTLL 300

Query: 300 HMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
            +Y   G  ++ +  F  ++     P    YNS+I  +   G  +  ++L   M+ SG++
Sbjct: 301 RIYGNQGCFEQVRSLFSDMKDLSTPPTVATYNSLIQVFGEGGYFQESINLFHDMVDSGVK 360

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
             +  Y ALL    + G  R A +I   M   E  P+LE+   L+ +YG+      A  +
Sbjct: 361 PDDATYSALLSVCGRGGLTREAAKIHQHMLTNESTPSLEASAGLISSYGKMAMYKDALVS 420

Query: 420 FDYMIR-LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLG 478
           + Y IR  G  P      ++I  Y K  L  +A + L  + K GF+   ++   +++   
Sbjct: 421 Y-YRIREAGLDPQVSAYDALIQGYAKGGLYVEAGSTLYAMNKAGFQAPVSSVNSVMEAYS 479

Query: 479 RLQLINEAEQLLGKI-----SELGEAPPFKIQVSLCDM 511
           ++ L +EA +   ++     SE+ E     +    CDM
Sbjct: 480 KVGLHDEALEFFSELQQKEGSEVDERTHETLLGVYCDM 517



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 44/214 (20%), Positives = 90/214 (42%), Gaps = 6/214 (2%)

Query: 382 GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL-GHKPDDRCTASMIA 440
           G +T  M +   + T++  +L+   +    D  +A   F YM R    KP +     MI 
Sbjct: 31  GSVTRCMDLYRSKLTMQDFSLIFREFAARSDWHRALRLFKYMQRQQWCKPTEHIYTIMIG 90

Query: 441 AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
             G++ LL+K   +  ++ ++  +     +T L++  GR      +  LL ++ +    P
Sbjct: 91  IMGREGLLEKCSEIFEDMPENDVKWNVYAFTALINAYGRNGQYEASLHLLARMKKEQVEP 150

Query: 501 PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQR 558
                 ++ +  ++ G++ + L  L F + + E + PD   +  +++   + G ++ A  
Sbjct: 151 NLITYNTVLNACSKGGLDWEGLLNL-FAQMRHEGIQPDLITYNTLLSACSSRGLVEQAAM 209

Query: 559 VHGLMEAQGFAASERLKVALISSQTFNRQRQPTR 592
           V   M   G  A      +L+   TF    Q  R
Sbjct: 210 VFKTMNESGVVADAVTYKSLV--DTFAGSNQLGR 241



 Score = 38.5 bits (88), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 9/127 (7%)

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEF-QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           + R FA   D   A ++   M+ +++ +PT    T+++   G+ G  ++    F+ M   
Sbjct: 52  IFREFAARSDWHRALRLFKYMQRQQWCKPTEHIYTIMIGIMGREGLLEKCSEIFEDMPEN 111

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATY-TVL-------VDWLG 478
             K +     ++I AYG+    + +L+LL  ++K+  EP   TY TVL       +DW G
Sbjct: 112 DVKWNVYAFTALINAYGRNGQYEASLHLLARMKKEQVEPNLITYNTVLNACSKGGLDWEG 171

Query: 479 RLQLINE 485
            L L  +
Sbjct: 172 LLNLFAQ 178


>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g31850, chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 136/286 (47%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  L+D       L+  +    +M  +G +PD+VT T+LV +  KA + D A   F+ +R
Sbjct: 335 YITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMR 394

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P+   YN++I   + AG+ +  + L+D M + G++ +   Y+  +  F + G+  
Sbjct: 395 KQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGETG 454

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A +    M+ +   P + +C   + +  + G   +A++ F+ +   G  PD      M+
Sbjct: 455 KAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMM 514

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             Y K   +D+A+NLL E+ ++G EP       L+D L +   ++EA Q+  ++ ++  +
Sbjct: 515 KCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLS 574

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIIN 545
           P      +L     + G  +KA++    +  KK       F  +++
Sbjct: 575 PTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLD 620



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 122/253 (48%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +  E  + +++ YS L+ A  K+   E    +LK+M + G+ P++ T T+ + +  +AG 
Sbjct: 218 MVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGK 277

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D A E F  +   G  PD   Y  +I A  NAGQ +    L   M  +G +  + IY+ 
Sbjct: 278 IDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYIT 337

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           LL  F   GD+    +  + M  + + P + + T+LV+   +A D D+A + FD M + G
Sbjct: 338 LLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQG 397

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P+     ++I    +   ++ AL LL  +E  G +P   TY   +D+ G+     +A 
Sbjct: 398 ILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAV 457

Query: 488 QLLGKISELGEAP 500
           +   K+   G  P
Sbjct: 458 ETFEKMKAKGIVP 470



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 113/241 (46%)

Query: 260  YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
            ++ L+  H K   + +   + K+M      PD +T  +++   +K+ NLD+A + F  L 
Sbjct: 826  FNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLV 885

Query: 320  SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
            S  F+P  + Y  +I      G+ +  M L + M   G + +  I+  L+  + + GD  
Sbjct: 886  SSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTE 945

Query: 380  GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
             A Q+   M  E  +P L+S T+LV+    AG  D+A   F+ +   G  PD      +I
Sbjct: 946  TACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRII 1005

Query: 440  AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
               GK   +++AL L  E+   G  P   TY  L+  LG   ++ +A+++  ++   G  
Sbjct: 1006 NGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLE 1065

Query: 500  P 500
            P
Sbjct: 1066 P 1066



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 122/275 (44%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  +  A +    L     +L KM + G V +  +   L+H+  ++G    A E +  + 
Sbjct: 160 YLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMV 219

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           S G +P  K Y+++++A       ++ M L+  M   G+  +   +   +R   + G + 
Sbjct: 220 SEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKID 279

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A +I   M  E   P L + T+L++A   AG  + A+  F  M   GHKPD     +++
Sbjct: 280 EAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLL 339

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             +     LD       ++E DG+ P   T+T+LVD L + +  +EA      + + G  
Sbjct: 340 DKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGIL 399

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ 534
           P      +L     RAG  + AL+ L  +E+   Q
Sbjct: 400 PNLHTYNTLICGLLRAGRIEDALKLLDTMESVGVQ 434



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 103/233 (44%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           Q     Y   ID   K      A    +KM   GIVP+IV     ++  ++ G L  AK 
Sbjct: 434 QPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKT 493

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            F  LR +G  PD   YN M+  Y   GQ    ++L+  MI +G E    +  +L+ S  
Sbjct: 494 MFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLY 553

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           + G V  A Q+ + M+  +  PT+ +   L+   G+ G   +A   F+ MI     P+  
Sbjct: 554 KAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTI 613

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
              +++  + K + ++ AL +  ++     +P   TY  ++  L +   +N A
Sbjct: 614 SFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHA 666



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 149/353 (42%), Gaps = 7/353 (1%)

Query: 201  LEKEEDPSPLLAEWKELLQPSRID--WINLLDRLREQNTQLY-FKVAELVLSEESFQTNV 257
            +E E D + + AE   L    R D   I L+  L +   +LY +++ +    +      +
Sbjct: 729  VEAEMDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFDKFTKKLGISPTL 788

Query: 258  RDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFES 317
              Y+ LI    + +  E A  + K M   G  PD  T  +L+ ++ K+G +    E ++ 
Sbjct: 789  ASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKE 848

Query: 318  LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
            + S   +PD   YN +I +   +      +     +++S    +   Y  L+   A+ G 
Sbjct: 849  MISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGR 908

Query: 378  VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
            +  A ++   M     +P      +L+  YG+ GD + A   F  M+  G +PD +    
Sbjct: 909  LEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTI 968

Query: 438  MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
            ++        +D+AL    EL+  G +P    Y  +++ LG+ Q + EA  L  ++   G
Sbjct: 969  LVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRG 1028

Query: 498  EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAG 550
              P      SL      AG+ ++A +   + E +   + PD F    N L+ G
Sbjct: 1029 IVPDLYTYNSLMLNLGLAGMVEQAKRM--YEELQLAGLEPDVFTY--NALIRG 1077



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 68/332 (20%), Positives = 142/332 (42%), Gaps = 10/332 (3%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           V+ ++    N+  Y+ LI    +   +EDA ++L  M   G+ P   T    +  + K+G
Sbjct: 392 VMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSG 451

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
              +A E FE +++ G  P+    N+ + +    G+ +   ++ + +  +G+      Y 
Sbjct: 452 ETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYN 511

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            +++ +++ G V  A  + + M     +P +     L+++  +AG  D+A   FD M  +
Sbjct: 512 MMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDM 571

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
              P      ++++  GK+  + KA+ L   +      P   ++  L+D   +   +  A
Sbjct: 572 KLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDEVELA 631

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFE--RII 544
            ++  K++ +   P      ++  +Y     E K   A  F    K+ M PD      ++
Sbjct: 632 LKMFSKMTVMDCKPDVLTYNTV--IYGLIK-ENKVNHAFWFFHQLKKSMHPDHVTICTLL 688

Query: 545 NGLLAGGFLQDAQRVHGLMEAQGFAASERLKV 576
            GL+  G + DA  +     A+ F    R +V
Sbjct: 689 PGLVKCGQIGDAISI-----ARDFMYQVRFRV 715



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 101/226 (44%)

Query: 248  LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
            L    F+   R Y  LID  AK   LE+A R+ ++M++ G  P+     +L++ Y K G+
Sbjct: 884  LVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGD 943

Query: 308  LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
             + A + F+ + + G +PD K Y  ++     AG+    +   + + ++G++     Y  
Sbjct: 944  TETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNR 1003

Query: 368  LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
            ++    +   +  A  + N MR     P L +   L+   G AG  +QA+  ++ +   G
Sbjct: 1004 IINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAG 1063

Query: 428  HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVL 473
             +PD     ++I  Y      + A  +   +  DG  P   TY  L
Sbjct: 1064 LEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQL 1109


>gi|449522636|ref|XP_004168332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 159/357 (44%), Gaps = 49/357 (13%)

Query: 186 PITGKCKLITDKILSLEKEEDPSPLLAEWKELLQ---PSRIDWINLL-DRLREQNTQLYF 241
           P  G C  + DK+++      P  +   + E+L+   P ++ + N+L ++  ++ +    
Sbjct: 187 PFHG-CGYLLDKMIN---SNSPVTIWTFYSEILEYGFPPKVQYYNILINKFCKEGS---I 239

Query: 242 KVAELVLSE---ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVL 298
           + A+L+ +E      +     ++ LI+   K   L++  R+ K M EN I PD+ T +VL
Sbjct: 240 RDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVL 299

Query: 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
           +H   K G LD A++ F+ ++  G +P+   + ++I     + +    M+    M+T G+
Sbjct: 300 IHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQYRSRRMDSAMNTYHQMLTMGV 359

Query: 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR- 417
           +    +Y  LL    + GDV  A ++ + M++   +P   + T L++ Y + GD + A  
Sbjct: 360 KPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDKITYTTLIDGYCKEGDLESAME 419

Query: 418 ------------SNFDY----------------------MIRLGHKPDDRCTASMIAAYG 443
                        N  +                      M+  G KPDD     +I  Y 
Sbjct: 420 IRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYC 479

Query: 444 KKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
           KK  +     LL E++ +G +PG  TY VL++ L +   +  A  LL  +  LG  P
Sbjct: 480 KKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTP 536



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 69/346 (19%), Positives = 132/346 (38%), Gaps = 35/346 (10%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++   +FQ        L+D     N          ++ E G  P +    +L++ + K G
Sbjct: 178 LVRNSNFQIPFHGCGYLLDKMINSNSPVTIWTFYSEILEYGFPPKVQYYNILINKFCKEG 237

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           ++  AK  F  +R  G +P    +N++I     +     G  L   M  + I      Y 
Sbjct: 238 SIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYS 297

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+    + G +  A Q+ + M+    +P   + T L++   ++   D A + +  M+ +
Sbjct: 298 VLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQYRSRRMDSAMNTYHQMLTM 357

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD----------- 475
           G KPD     +++    K   ++KA  L+ E++  G +P   TYT L+D           
Sbjct: 358 GVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDKITYTTLIDGYCKEGDLESA 417

Query: 476 ------------------------WLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
                                      R   + +AE+ L ++ E G  P       + D 
Sbjct: 418 MEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDG 477

Query: 512 YARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQ 557
           Y + G  K   + L  ++    + G   +  ++NGL   G +++A 
Sbjct: 478 YCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNAN 523



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 68/152 (44%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LID + KE  LE A  I K MNE G+V D V  T L+  + + G +  A+     + 
Sbjct: 401 YTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMV 460

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +PD   Y  +I  Y   G  K+G  L+  M  +G +     Y  L+    + G ++
Sbjct: 461 EAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMK 520

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAG 411
            A  +   M      P   +  +L+E + + G
Sbjct: 521 NANMLLEAMLNLGVTPDDITYNILLEGHCKNG 552



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 98/215 (45%), Gaps = 3/215 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L++   K   +  A +++ +M   G+ PD +T T L+  Y K G+L+ A E  + + 
Sbjct: 366 YNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMN 425

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G   D   + ++I  +   G+ +     +  M+ +G++  +  Y  ++  + + G+V+
Sbjct: 426 EEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVK 485

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
              ++   M+I   +P + +  +L+    + G    A    + M+ LG  PDD     ++
Sbjct: 486 MGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNILL 545

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
             + K     KA +LL    + G     A YT LV
Sbjct: 546 EGHCKNG---KAEDLLKLRNEKGLIVDYAYYTSLV 577



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 79/160 (49%), Gaps = 2/160 (1%)

Query: 218 LQPSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           ++P +I +  L+D   +E + +   ++ +  ++EE    +   ++ LI    ++  + DA
Sbjct: 394 MKPDKITYTTLIDGYCKEGDLESAMEIRK-GMNEEGVVLDNVAFTALISGFCRDGRVRDA 452

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
           ER L++M E G+ PD  T T+++  Y K GN+    +  + ++ +G +P    YN ++  
Sbjct: 453 ERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNG 512

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
               GQ K    L++ M+  G+   +  Y  LL    + G
Sbjct: 513 LCKQGQMKNANMLLEAMLNLGVTPDDITYNILLEGHCKNG 552



 Score = 42.0 bits (97), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 28/135 (20%), Positives = 59/135 (43%)

Query: 355 TSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPD 414
           T+G   S  ++ AL+ ++   G V  A Q   ++R   FQ     C  L++    +  P 
Sbjct: 146 TAGTRCSNFVFDALMIAYWDSGFVSDAIQCFRLVRNSNFQIPFHGCGYLLDKMINSNSPV 205

Query: 415 QARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
              + +  ++  G  P  +    +I  + K+  +  A  +  E+ K G  P   ++  L+
Sbjct: 206 TIWTFYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLI 265

Query: 475 DWLGRLQLINEAEQL 489
           + L + + ++E  +L
Sbjct: 266 NGLCKSRNLDEGFRL 280


>gi|255557937|ref|XP_002519997.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540761|gb|EEF42321.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1429

 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 133/285 (46%), Gaps = 2/285 (0%)

Query: 218 LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L+P  I +  L+    RE N +   KV +  +     Q ++  Y+ +I  + +      A
Sbjct: 278 LRPDIITYNTLISACSRESNLEEAVKVFD-DMEAHYCQPDLWTYNAMISVYGRCGFSGKA 336

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
           E++ K++   G  PD VT   L++ +++ GN+D+ KE    +   GF  D+  YN++I  
Sbjct: 337 EQLFKELESKGYFPDAVTYNSLLYAFAREGNVDKVKEICNEMVQMGFIRDEMTYNTIIHM 396

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           Y   GQ  L + L   M  SG       Y  L+ S  +   +  A  + + M     +PT
Sbjct: 397 YGKQGQHGLALQLYRDMKLSGRTPDAITYTVLIDSLGKANKMVEAANVMSEMLNIGVKPT 456

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           L + + L+  Y +AG   +A   FD M R G +PD    + M+  + + +   KA+ L  
Sbjct: 457 LRTYSALICGYARAGQRLEAEETFDCMRRSGIRPDQLAYSVMLDVFLRFDEATKAMMLYR 516

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
           E+ +DG  P P  Y  ++  LGR   + + ++++  + E+    P
Sbjct: 517 EMVRDGITPDPTVYGAMLRNLGRENKVEDIQRIIRDMEEVCGMNP 561



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/362 (23%), Positives = 159/362 (43%), Gaps = 36/362 (9%)

Query: 190 KCKLITDKILSLEKEEDPSPLLAEWKELLQPSRI-------------------DWINL-- 228
           + K +TD+IL L  ++  + +L + K  + P+                     +W+NL  
Sbjct: 111 RVKFLTDRILGLRPDQFVADVLDDSKVQMTPTDFCFVVKWVGQENWQRALEVFEWLNLRH 170

Query: 229 ------------LDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
                       L  L + N Q    V   + +E +    V+ Y+ ++  +A+       
Sbjct: 171 WYSPNARMLATILAVLGKAN-QEALAVEIFIRAESTVDNTVQVYNAMMGVYARTGRFNKV 229

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNL--DRAKEAFESLRSHGFQPDKKVYNSMI 334
           + +L  M E G  PD+V+   L++   KAG +  + A E    +R  G +PD   YN++I
Sbjct: 230 QGMLDLMRERGCEPDLVSFNTLINARLKAGAMTPNVAIELLNEVRRSGLRPDIITYNTLI 289

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
            A       +  + + D M     +     Y A++  + +CG    A Q+   +  + + 
Sbjct: 290 SACSRESNLEEAVKVFDDMEAHYCQPDLWTYNAMISVYGRCGFSGKAEQLFKELESKGYF 349

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P   +   L+ A+ + G+ D+ +   + M+++G   D+    ++I  YGK+     AL L
Sbjct: 350 PDAVTYNSLLYAFAREGNVDKVKEICNEMVQMGFIRDEMTYNTIIHMYGKQGQHGLALQL 409

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
             +++  G  P   TYTVL+D LG+   + EA  ++ ++  +G  P  +   +L   YAR
Sbjct: 410 YRDMKLSGRTPDAITYTVLIDSLGKANKMVEAANVMSEMLNIGVKPTLRTYSALICGYAR 469

Query: 515 AG 516
           AG
Sbjct: 470 AG 471



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 142/322 (44%), Gaps = 6/322 (1%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLED--AERILKKMNENGIVPDIVTSTVLVHMYSK 304
           ++ E   + ++  ++ LI+A  K   +    A  +L ++  +G+ PDI+T   L+   S+
Sbjct: 235 LMRERGCEPDLVSFNTLINARLKAGAMTPNVAIELLNEVRRSGLRPDIITYNTLISACSR 294

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
             NL+ A + F+ + +H  QPD   YN+MI  Y   G       L   + + G       
Sbjct: 295 ESNLEEAVKVFDDMEAHYCQPDLWTYNAMISVYGRCGFSGKAEQLFKELESKGYFPDAVT 354

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
           Y +LL +FA+ G+V    +I N M    F     +   ++  YG+ G    A   +  M 
Sbjct: 355 YNSLLYAFAREGNVDKVKEICNEMVQMGFIRDEMTYNTIIHMYGKQGQHGLALQLYRDMK 414

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
             G  PD      +I + GK N + +A N++ E+   G +P   TY+ L+    R     
Sbjct: 415 LSGRTPDAITYTVLIDSLGKANKMVEAANVMSEMLNIGVKPTLRTYSALICGYARAGQRL 474

Query: 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FER 542
           EAE+    +   G  P       + D++ R     KA+  + + E  ++ + PD   +  
Sbjct: 475 EAEETFDCMRRSGIRPDQLAYSVMLDVFLRFDEATKAM--MLYREMVRDGITPDPTVYGA 532

Query: 543 IINGLLAGGFLQDAQRVHGLME 564
           ++  L     ++D QR+   ME
Sbjct: 533 MLRNLGRENKVEDIQRIIRDME 554



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/280 (21%), Positives = 120/280 (42%), Gaps = 35/280 (12%)

Query: 260  YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
            Y  +I    K   + D E ++ +M E G  PD+     ++ +Y+   +  +  + ++ ++
Sbjct: 878  YRIMIGLLCKGKRVRDVEAMVTEMEEAGFRPDLSIWNSMLRLYTGIDDFRKTVQIYQRIK 937

Query: 320  SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ----- 374
              G QPD+  YN++I+ Y    +P+ G SL+  M   G+E   + Y +L+ +F +     
Sbjct: 938  EDGLQPDEDTYNTLIVMYCRDHRPEEGCSLMHEMRRIGLEPKLDTYKSLIAAFGKQQLVV 997

Query: 375  ------------------------------CGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
                                           G+   A ++ ++M+    +PT+ +  LL+
Sbjct: 998  DAEELFEELLSKGSKLDRSFYHIMMKIYRNSGNHSKAEKLLSMMKDAGVEPTIATMHLLM 1057

Query: 405  EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
             +YG +G P +A      +  +G        +S+I AY K       +  L+E++K+G E
Sbjct: 1058 VSYGSSGQPQEAEKVLTNLKEMGLSLSTLPYSSVIDAYLKNKDYSVGIQKLVEMKKEGLE 1117

Query: 465  PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKI 504
            P    +T  +      +  ++A  LL  + + G   P ++
Sbjct: 1118 PDHRIWTCFIRAASLSEHTHDAILLLQALQDSGFDLPSRL 1157



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 156/375 (41%), Gaps = 25/375 (6%)

Query: 207  PSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDA 266
            PSP +     LLQ   +D      RL E    LY    E+   +  FQ +      ++DA
Sbjct: 801  PSPTVDSINGLLQALIVD-----GRLEE----LYVVTQEI--QDMGFQISKSSILLILDA 849

Query: 267  HAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPD 326
             A+ + + +A++I + M   G  P +    +++ +  K   +   +     +   GF+PD
Sbjct: 850  FARVSNIAEAKKIYQGMKAAGYFPTMHLYRIMIGLLCKGKRVRDVEAMVTEMEEAGFRPD 909

Query: 327  KKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR---GAGQ 383
              ++NSM+  Y      +  + +   +   G++  E+ Y  L+  +  C D R   G   
Sbjct: 910  LSIWNSMLRLYTGIDDFRKTVQIYQRIKEDGLQPDEDTYNTLIVMY--CRDHRPEEGCSL 967

Query: 384  ITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYG 443
            +  + RI   +P L++   L+ A+G+      A   F+ ++  G K D      M+  Y 
Sbjct: 968  MHEMRRI-GLEPKLDTYKSLIAAFGKQQLVVDAEELFEELLSKGSKLDRSFYHIMMKIYR 1026

Query: 444  KKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFK 503
                  KA  LL  ++  G EP  AT  +L+   G      EAE++L  + E+G +    
Sbjct: 1027 NSGNHSKAEKLLSMMKDAGVEPTIATMHLLMVSYGSSGQPQEAEKVLTNLKEMGLSLSTL 1086

Query: 504  IQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFL----QDAQRV 559
               S+ D Y +       +Q L  +E KKE + PD   RI    +    L     DA  +
Sbjct: 1087 PYSSVIDAYLKNKDYSVGIQKL--VEMKKEGLEPD--HRIWTCFIRAASLSEHTHDAILL 1142

Query: 560  HGLMEAQGFAASERL 574
               ++  GF    RL
Sbjct: 1143 LQALQDSGFDLPSRL 1157



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 95/202 (47%), Gaps = 4/202 (1%)

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE-EIYLALL 369
           A + F  +R +G +P K +Y SM++ Y   G P+    L+D+    G+   +  I +A++
Sbjct: 683 ASQIFSDMRFNGVKPSKSLYRSMVLMYCKMGFPETAHYLIDLAEIEGMPFDKISIDVAVI 742

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
            ++ +    + A  +   +R        +    L++AY  +G  +QAR+ F+ M+R G  
Sbjct: 743 ETYGKLKLWQKAESLVGNLRQRCTNVDRKVWNALIQAYAASGCYEQARAVFNTMMRDGPS 802

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           P       ++ A      L++   +  E++  GF+   ++  +++D   R+  I EA+++
Sbjct: 803 PTVDSINGLLQALIVDGRLEELYVVTQEIQDMGFQISKSSILLILDAFARVSNIAEAKKI 862

Query: 490 LGKISELGEAPP---FKIQVSL 508
              +   G  P    ++I + L
Sbjct: 863 YQGMKAAGYFPTMHLYRIMIGL 884



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/252 (18%), Positives = 102/252 (40%)

Query: 263 LIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG 322
           +I+ + K    + AE ++  + +     D      L+  Y+ +G  ++A+  F ++   G
Sbjct: 741 VIETYGKLKLWQKAESLVGNLRQRCTNVDRKVWNALIQAYAASGCYEQARAVFNTMMRDG 800

Query: 323 FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAG 382
             P     N ++ A +  G+ +    +   +   G + S+   L +L +FA+  ++  A 
Sbjct: 801 PSPTVDSINGLLQALIVDGRLEELYVVTQEIQDMGFQISKSSILLILDAFARVSNIAEAK 860

Query: 383 QITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAY 442
           +I   M+   + PT+    +++    +        +    M   G +PD     SM+  Y
Sbjct: 861 KIYQGMKAAGYFPTMHLYRIMIGLLCKGKRVRDVEAMVTEMEEAGFRPDLSIWNSMLRLY 920

Query: 443 GKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPF 502
              +   K + +   +++DG +P   TY  L+    R     E   L+ ++  +G  P  
Sbjct: 921 TGIDDFRKTVQIYQRIKEDGLQPDEDTYNTLIVMYCRDHRPEEGCSLMHEMRRIGLEPKL 980

Query: 503 KIQVSLCDMYAR 514
               SL   + +
Sbjct: 981 DTYKSLIAAFGK 992



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/256 (20%), Positives = 108/256 (42%), Gaps = 1/256 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTV-LVHMYSKAGNLDRAKEAFESL 318
           Y  ++  + K    E A  ++      G+  D ++  V ++  Y K     +A+    +L
Sbjct: 702 YRSMVLMYCKMGFPETAHYLIDLAEIEGMPFDKISIDVAVIETYGKLKLWQKAESLVGNL 761

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
           R      D+KV+N++I AY  +G  +   ++ + M+  G   + +    LL++    G +
Sbjct: 762 RQRCTNVDRKVWNALIQAYAASGCYEQARAVFNTMMRDGPSPTVDSINGLLQALIVDGRL 821

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
                +T  ++   FQ +  S  L+++A+ +  +  +A+  +  M   G+ P       M
Sbjct: 822 EELYVVTQEIQDMGFQISKSSILLILDAFARVSNIAEAKKIYQGMKAAGYFPTMHLYRIM 881

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           I    K   +     ++ E+E+ GF P  + +  ++     +    +  Q+  +I E G 
Sbjct: 882 IGLLCKGKRVRDVEAMVTEMEEAGFRPDLSIWNSMLRLYTGIDDFRKTVQIYQRIKEDGL 941

Query: 499 APPFKIQVSLCDMYAR 514
            P      +L  MY R
Sbjct: 942 QPDEDTYNTLIVMYCR 957



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/280 (20%), Positives = 111/280 (39%), Gaps = 55/280 (19%)

Query: 307 NLDRAKEAFESLR-SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
           N  RA E FE L   H + P+ ++  +++     A Q  L + +  +   S ++ + ++Y
Sbjct: 155 NWQRALEVFEWLNLRHWYSPNARMLATILAVLGKANQEALAVEIF-IRAESTVDNTVQVY 213

Query: 366 LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAG--DPDQARSNFDYM 423
            A++  +A+ G       + ++MR    +P L S   L+ A  +AG   P+ A    + +
Sbjct: 214 NAMMGVYARTGRFNKVQGMLDLMRERGCEPDLVSFNTLINARLKAGAMTPNVAIELLNEV 273

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483
            R G +PD     ++I+A  +++ L++A+ +  ++E    +P   TY  ++         
Sbjct: 274 RRSGLRPDIITYNTLISACSRESNLEEAVKVFDDMEAHYCQPDLWTYNAMIS-------- 325

Query: 484 NEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK------------ 531
                                      +Y R G   KA Q    LE+K            
Sbjct: 326 ---------------------------VYGRCGFSGKAEQLFKELESKGYFPDAVTYNSL 358

Query: 532 ----KEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
                 +   D  + I N ++  GF++D    + ++   G
Sbjct: 359 LYAFAREGNVDKVKEICNEMVQMGFIRDEMTYNTIIHMYG 398


>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
 gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
          Length = 814

 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 147/336 (43%), Gaps = 4/336 (1%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVP-DIVTSTVLVHMYSKA 305
           ++  +  + ++  +  L+D   K    E A  +  +M   G VP D    T +V    KA
Sbjct: 179 IMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKA 238

Query: 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
             +  A+E F  +   GF PD   YN+MI     AG  +  + ++D M+      +E  Y
Sbjct: 239 KRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTY 298

Query: 366 LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
             L+ S  + G +  A ++  +M    F+P     T L+  + ++G   +A S FD M+ 
Sbjct: 299 GILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVE 358

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
            G++PD      MI    K    ++A     E+ + G +P   TYT ++  L ++  +  
Sbjct: 359 AGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVAN 418

Query: 486 AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIIN 545
           A +++  +   G  P     + L D + + G   +A Q L  L+          +  ++N
Sbjct: 419 AFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVN 478

Query: 546 GLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
           GL  GG ++  + +  L E Q  AA+E L   L  S
Sbjct: 479 GLCDGGSVE--KTLDDLFE-QSKAAAETLDPGLCCS 511



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/375 (24%), Positives = 156/375 (41%), Gaps = 42/375 (11%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           V++   F+ N   Y+ LI   AK   +++A  +  +M E G  PD++T TV++    K+G
Sbjct: 320 VMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSG 379

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           N ++A ++FE +   G +P+   Y ++I      G+      ++  MI  G       Y+
Sbjct: 380 NFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYI 439

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAG--------------- 411
            LL  F + G +  A Q+ + +      P L+  + LV      G               
Sbjct: 440 CLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEKTLDDLFEQSKA 499

Query: 412 -----DP----------------DQARSNFDYMIRLGHKPDDRCTASMIAAY--GKKNLL 448
                DP                D+A   F  M+  G KPD      +I      ++N +
Sbjct: 500 AAETLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRV 559

Query: 449 DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSL 508
           ++A  LL +LEK G+ P   TYT L   L ++  ++ A ++L + S  G         +L
Sbjct: 560 ERAFALLHDLEKVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTAL 619

Query: 509 CDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQ 566
           C      G   +A+    F E  ++   PD   +  IINGL+    L+DA +    M  +
Sbjct: 620 CTGLCYQGQVDRAVSL--FQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGK 677

Query: 567 GFAASERLKVALISS 581
           G   +     AL+ +
Sbjct: 678 GQKPTVATYTALVQA 692



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 114/257 (44%), Gaps = 4/257 (1%)

Query: 248 LSEESFQTNVRDYSKLID--AHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKA 305
           +  E  + +   Y+ LI+    ++EN +E A  +L  + + G +PD VT T L     K 
Sbjct: 532 MVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGLCKI 591

Query: 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
           G +DRA +  E   S G+  D   Y ++       GQ    +SL   M+  G       Y
Sbjct: 592 GEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAY 651

Query: 366 LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
             ++    +   +  A +  + M  +  +PT+ + T LV+A   AG+ D+A   F+ M+ 
Sbjct: 652 CCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFESMLA 711

Query: 426 LGHKPDDRCTA-SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
            G          ++I  + K   +D AL L  ++   G  P   T   L D L R     
Sbjct: 712 RGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTE 771

Query: 485 EAEQLLGKISELGEAPP 501
           +A++LL +++  G +PP
Sbjct: 772 KAQELLQEMAA-GGSPP 787



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 107/259 (41%), Gaps = 36/259 (13%)

Query: 322 GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGA 381
           GFQ D   YN ++   V         ++ + M+ +GI  +   +  L+RSFA+      A
Sbjct: 114 GFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDA 173

Query: 382 GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT-ASMIA 440
                IM+ +  +P L +  +LV+   +AG  ++A   F  M+ +G  P DR    +M+ 
Sbjct: 174 VTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVR 233

Query: 441 AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
              K   + +A  +  ++EK GF P    Y  ++D L                       
Sbjct: 234 TLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGL----------------------- 270

Query: 501 PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVH 560
                       A+AG  ++AL+ L  + AK        +  ++N L   G L+ A+ + 
Sbjct: 271 ------------AKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELF 318

Query: 561 GLMEAQGFAASERLKVALI 579
            +M A GF  +  +  +LI
Sbjct: 319 RVMAASGFRPNSVIYTSLI 337



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 62/319 (19%), Positives = 123/319 (38%), Gaps = 38/319 (11%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ +I   +K   + +A RI+K M  +G  PD VT   L+  + K G LD A +  
Sbjct: 399 NVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLL 458

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQ--------------------PKLGMSLV----- 350
           + L      P+ ++Y+S++    + G                     P L  S++     
Sbjct: 459 DELDKCSSSPNLQLYSSLVNGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCCSIIVGLCK 518

Query: 351 -----------DMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE--FQPTL 397
                        M++ G +     Y  L+    +  + R       +  +E+  + P  
Sbjct: 519 TGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDA 578

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
            + T L     + G+ D+A    +     G   D     ++      +  +D+A++L  E
Sbjct: 579 VTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQE 638

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI 517
           + + G  P  A Y  +++ L +++ + +A +   ++   G+ P      +L      AG 
Sbjct: 639 MVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGN 698

Query: 518 EKKALQALGFLEAKKEQMG 536
             +A      + A+ E +G
Sbjct: 699 VDEAFHRFESMLARGELVG 717


>gi|255548407|ref|XP_002515260.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545740|gb|EEF47244.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 878

 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 146/310 (47%), Gaps = 5/310 (1%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG-NL 308
           +E +   V  +S LI A+ +     +A ++   M  NG++P++VT   ++    K G   
Sbjct: 218 KEGYGKTVYAFSALISAYGRSGYCNEAIKVFDSMKSNGLMPNLVTYNAVIDACGKGGVEF 277

Query: 309 DRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLAL 368
            +  E F+ + S+G QPD+  +NS++      G  +    L   M+  GI++    Y  L
Sbjct: 278 KKVVEIFDGMLSNGVQPDRITFNSLLAVCSRGGLWEAARRLFSAMVDKGIDQDIFTYNTL 337

Query: 369 LRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH 428
           L +  + G +  A +I + M  +   P + + + +++ Y + G  D A + F+ M  LG 
Sbjct: 338 LDAVCKGGQMDLAFEIMSEMPTKNILPNVVTYSTMIDGYAKVGRLDDALNMFNEMKFLGV 397

Query: 429 KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQ 488
             D     ++++ Y K    ++AL++  E+E  G      TY  L+   G+    +E  +
Sbjct: 398 GLDRVSYNTLLSVYAKLGRFEQALDVCKEMENAGIRKDVVTYNALLAGYGKQYRYDEVRR 457

Query: 489 LLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIING 546
           +  ++     +P      +L D+Y++ G+ K+A++   F E K+  +  D   +  +I+ 
Sbjct: 458 VFEEMKRGRVSPNLLTYSTLIDVYSKGGLYKEAMEV--FREFKQAGLKADVVLYSALIDA 515

Query: 547 LLAGGFLQDA 556
           L   G ++ +
Sbjct: 516 LCKNGLVESS 525



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/301 (21%), Positives = 129/301 (42%), Gaps = 3/301 (0%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELV--LSEESFQTNVRDYSKLIDAHAKENCLED 275
           L P+ + +  ++D   +   + + KV E+   +     Q +   ++ L+   ++    E 
Sbjct: 256 LMPNLVTYNAVIDACGKGGVE-FKKVVEIFDGMLSNGVQPDRITFNSLLAVCSRGGLWEA 314

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A R+   M + GI  DI T   L+    K G +D A E    + +    P+   Y++MI 
Sbjct: 315 ARRLFSAMVDKGIDQDIFTYNTLLDAVCKGGQMDLAFEIMSEMPTKNILPNVVTYSTMID 374

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
            Y   G+    +++ + M   G+      Y  LL  +A+ G    A  +   M     + 
Sbjct: 375 GYAKVGRLDDALNMFNEMKFLGVGLDRVSYNTLLSVYAKLGRFEQALDVCKEMENAGIRK 434

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
            + +   L+  YG+    D+ R  F+ M R    P+    +++I  Y K  L  +A+ + 
Sbjct: 435 DVVTYNALLAGYGKQYRYDEVRRVFEEMKRGRVSPNLLTYSTLIDVYSKGGLYKEAMEVF 494

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
            E ++ G +     Y+ L+D L +  L+  +  LL ++++ G  P      S+ D + R+
Sbjct: 495 REFKQAGLKADVVLYSALIDALCKNGLVESSVTLLDEMTKEGIRPNVVTYNSIIDAFGRS 554

Query: 516 G 516
            
Sbjct: 555 A 555



 Score = 43.9 bits (102), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 29/123 (23%), Positives = 55/123 (44%), Gaps = 14/123 (11%)

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLES--------CTLLVEAYGQAGDPDQA 416
           Y  LLR     GD   A      +R  EF    ES         + ++   G+ G  + A
Sbjct: 156 YTFLLRELGNRGDSAKA------VRCFEFAVRRESGKNEQGKLASAMISTLGRLGKVELA 209

Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476
           ++ FD  ++ G+       +++I+AYG+    ++A+ +   ++ +G  P   TY  ++D 
Sbjct: 210 KAVFDTALKEGYGKTVYAFSALISAYGRSGYCNEAIKVFDSMKSNGLMPNLVTYNAVIDA 269

Query: 477 LGR 479
            G+
Sbjct: 270 CGK 272


>gi|168011113|ref|XP_001758248.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690704|gb|EDQ77070.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 658

 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 152/308 (49%), Gaps = 1/308 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +  +S++ N+R  + L+ A+ +++ LE  E++++   + G+     +  +L+  YS+AG 
Sbjct: 245 MKSKSYKINLRTLNALLSAYTRKSLLEQVEKLMQDAEDAGLKLSTFSYGLLIDAYSRAGR 304

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           LD+AK AF +++      +  +Y+ +++AY NA Q    + L+  M  S I+ ++ I+  
Sbjct: 305 LDQAKAAFHNMKVENVPANAFIYSRLMVAYRNARQWDGTIRLLKDMYASNIKPNQFIFNI 364

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+ ++ + G +  A +    M  E F+P + +   L+EA+ +AG   +A      M    
Sbjct: 365 LIDTYGKFGRLPQAMRTFAQMDKEGFKPDVVTWNSLIEAHCRAGLITEALDLLKQMQERE 424

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P       ++ A G  N   +   LL E+   G +P   TYT LVD  G  +   EA 
Sbjct: 425 CVPSLHTYNIILNALGWHNRWKEMALLLDEMRFKGLDPNVVTYTTLVDSYGTSKRYREAS 484

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
           + L ++   G  P   +  +L + YA+ G+ ++A++    +E    ++       +IN  
Sbjct: 485 EYLKQMKSQGLQPSTSVYCALANSYAKRGLCEQAMEVFKSMEKDGVELNLSMLNLLINAF 544

Query: 548 -LAGGFLQ 554
            +AG +++
Sbjct: 545 GVAGKYVE 552



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 134/313 (42%), Gaps = 20/313 (6%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           E+   N   YS+L+ A+      +   R+LK M  + I P+     +L+  Y K G L +
Sbjct: 318 ENVPANAFIYSRLMVAYRNARQWDGTIRLLKDMYASNIKPNQFIFNILIDTYGKFGRLPQ 377

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A   F  +   GF+PD   +NS+I A+  AG     + L+  M       S   Y  +L 
Sbjct: 378 AMRTFAQMDKEGFKPDVVTWNSLIEAHCRAGLITEALDLLKQMQERECVPSLHTYNIILN 437

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
           +       +    + + MR +   P + + T LV++YG +    +A      M   G +P
Sbjct: 438 ALGWHNRWKEMALLLDEMRFKGLDPNVVTYTTLVDSYGTSKRYREASEYLKQMKSQGLQP 497

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
                 ++  +Y K+ L ++A+ +   +EKDG E   +   +L++  G      EA  + 
Sbjct: 498 STSVYCALANSYAKRGLCEQAMEVFKSMEKDGVELNLSMLNLLINAFGVAGKYVEAFSVF 557

Query: 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL--- 547
             I E+G +P      +L           KAL     ++A++    PD +E+++      
Sbjct: 558 DYILEVGMSPDVVTYTTL----------MKAL-----IKAEQLDQVPDVYEQMVRAGCTP 602

Query: 548 --LAGGFLQDAQR 558
             +A   L+ AQR
Sbjct: 603 DDMAKDMLRSAQR 615



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 110/221 (49%), Gaps = 6/221 (2%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + +E F+ +V  ++ LI+AH +   + +A  +LK+M E   VP + T  ++++     G 
Sbjct: 385 MDKEGFKPDVVTWNSLIEAHCRAGLITEALDLLKQMQERECVPSLHTYNIILN---ALGW 441

Query: 308 LDRAKEA---FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
            +R KE     + +R  G  P+   Y +++ +Y  + + +     +  M + G++ S  +
Sbjct: 442 HNRWKEMALLLDEMRFKGLDPNVVTYTTLVDSYGTSKRYREASEYLKQMKSQGLQPSTSV 501

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
           Y AL  S+A+ G    A ++   M  +  +  L    LL+ A+G AG   +A S FDY++
Sbjct: 502 YCALANSYAKRGLCEQAMEVFKSMEKDGVELNLSMLNLLINAFGVAGKYVEAFSVFDYIL 561

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
            +G  PD     +++ A  K   LD+  ++  ++ + G  P
Sbjct: 562 EVGMSPDVVTYTTLMKALIKAEQLDQVPDVYEQMVRAGCTP 602



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 92/428 (21%), Positives = 172/428 (40%), Gaps = 62/428 (14%)

Query: 157 GLDLSDPKWTEVAEKIHERGEMILPEEPKPITGKCKLITDKILSLEKEEDPSPLLAEWKE 216
           GL L  P+W         RG  I     K  T KC + T K+L+L          +E  +
Sbjct: 37  GLQL--PEW---------RGTFI-----KLCTSKCSVTTRKLLTLLISSAVCD--SETID 78

Query: 217 LLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           LL    I  ++   R+ E+   L+ ++ +L +S          Y+ ++   A+E+ LE A
Sbjct: 79  LLSAIAITGLSKESRV-EEAMLLFDQLKQLGVSPGPMA-----YNAIVGTCAREDRLETA 132

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAG-NLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
             ++ +M  +G  PD V  T++    +K    +D       ++   G + D K+YN +I 
Sbjct: 133 LELMNQMRGSGFQPDNVNYTLVFQACAKKRVGVDVISRVCANIEQEGLEMDTKLYNDVIN 192

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
           AY  AG P      + +M    +      Y +L+ +      +  A      M+ + ++ 
Sbjct: 193 AYCRAGDPDKAFQYMGLMQACDLVPDVRSYSSLIETLVVVRRLDDAEAAYAEMKSKSYKI 252

Query: 396 TLESCT-----------------------------------LLVEAYGQAGDPDQARSNF 420
            L +                                     LL++AY +AG  DQA++ F
Sbjct: 253 NLRTLNALLSAYTRKSLLEQVEKLMQDAEDAGLKLSTFSYGLLIDAYSRAGRLDQAKAAF 312

Query: 421 DYMIRLGHKPDDRCTAS-MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
             M ++ + P +    S ++ AY      D  + LL ++     +P    + +L+D  G+
Sbjct: 313 HNM-KVENVPANAFIYSRLMVAYRNARQWDGTIRLLKDMYASNIKPNQFIFNILIDTYGK 371

Query: 480 LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD 539
              + +A +   ++ + G  P      SL + + RAG+  +AL  L  ++ ++       
Sbjct: 372 FGRLPQAMRTFAQMDKEGFKPDVVTWNSLIEAHCRAGLITEALDLLKQMQERECVPSLHT 431

Query: 540 FERIINGL 547
           +  I+N L
Sbjct: 432 YNIILNAL 439


>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 123/253 (48%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +  E  + +++ YS L+ A  K+   E    +LK+M + G+ P++ T T+ + +  +AG 
Sbjct: 218 MVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGK 277

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D A E F  +   G  PD   Y  +I A  NAGQ +    L   M  +G +  + IY+ 
Sbjct: 278 IDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYIT 337

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           LL  F   GD+    +  + M  + + P + + T+LV+   +A D D+A + FD M + G
Sbjct: 338 LLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQG 397

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P+     ++I    +   ++ AL LL  +E  G +P   TY + +D+ G+     +A 
Sbjct: 398 ILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAV 457

Query: 488 QLLGKISELGEAP 500
           +   K+   G  P
Sbjct: 458 ETFEKMKAKGIVP 470



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 127/264 (48%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  L+D       L+  +    +M  +G +PD+VT T+LV +  KA + D A   F+ +R
Sbjct: 335 YITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMR 394

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P+   YN++I   + AG+ +  + L+  M + G++ +   Y   +  F + G+  
Sbjct: 395 KQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETG 454

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A +    M+ +   P + +C   + +  + G   +A++ F+ +   G  PD      M+
Sbjct: 455 KAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMM 514

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             Y K   +D+A+NLL E+ ++G EP       L+D L +   ++EA Q+  ++ ++  +
Sbjct: 515 KCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLS 574

Query: 500 PPFKIQVSLCDMYARAGIEKKALQ 523
           P      +L     + G  +KA++
Sbjct: 575 PTVVTYNTLLSGLGKEGRVQKAIE 598



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 113/241 (46%)

Query: 260  YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
            ++ L+  H K   + +   + K+M      PD +T  +++   +K+ NLD+A + F  L 
Sbjct: 826  FNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLV 885

Query: 320  SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
            S  F+P  + Y  +I      G+ +  M L + M   G + +  I+  L+  + + GD  
Sbjct: 886  SSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTE 945

Query: 380  GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
             A Q+   M  E  +P L+S T+LV+    AG  D+A   F+ +   G  PD      +I
Sbjct: 946  TACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRII 1005

Query: 440  AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
               GK   +++AL L  E+   G  P   TY  L+  LG   ++ +A+++  ++   G  
Sbjct: 1006 NGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLE 1065

Query: 500  P 500
            P
Sbjct: 1066 P 1066



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 133/310 (42%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  +  A +    L     +L KM + G V +  +   L+H+  ++G    A E +  + 
Sbjct: 160 YLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMV 219

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           S G +P  K Y+++++A       ++ M L+  M   G+  +   +   +R   + G + 
Sbjct: 220 SEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKID 279

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A +I   M  E   P L + T+L++A   AG  + A+  F  M   GHKPD     +++
Sbjct: 280 EAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLL 339

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             +     LD       ++E DG+ P   T+T+LVD L + +  +EA      + + G  
Sbjct: 340 DKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGIL 399

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P      +L     RAG  + AL+ LG +E+   Q     +   I+     G    A   
Sbjct: 400 PNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVET 459

Query: 560 HGLMEAQGFA 569
              M+A+G  
Sbjct: 460 FEKMKAKGIV 469



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 104/233 (44%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           Q     Y+  ID   K      A    +KM   GIVP+IV     ++  ++ G L  AK 
Sbjct: 434 QPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKT 493

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            F  LR +G  PD   YN M+  Y   GQ    ++L+  MI +G E    +  +L+ S  
Sbjct: 494 MFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLY 553

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           + G V  A Q+ + M+  +  PT+ +   L+   G+ G   +A   F+ MI     P+  
Sbjct: 554 KAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTI 613

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
              +++  + K + ++ AL +  ++     +P   TY  ++  L +   +N A
Sbjct: 614 SFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHA 666



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 149/353 (42%), Gaps = 7/353 (1%)

Query: 201  LEKEEDPSPLLAEWKELLQPSRID--WINLLDRLREQNTQLY-FKVAELVLSEESFQTNV 257
            +E E D + + AE   L    R D   I L+  L +   +LY +++ +    +      +
Sbjct: 729  VEAEMDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFDKFTKKLGISPTL 788

Query: 258  RDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFES 317
              Y+ LI    + +  E A  + K M   G  PD  T  +L+ ++ K+G +    E ++ 
Sbjct: 789  ASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKE 848

Query: 318  LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
            + S   +PD   YN +I +   +      +     +++S    +   Y  L+   A+ G 
Sbjct: 849  MISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGR 908

Query: 378  VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
            +  A ++   M     +P      +L+  YG+ GD + A   F  M+  G +PD +    
Sbjct: 909  LEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTI 968

Query: 438  MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
            ++        +D+AL    EL+  G +P    Y  +++ LG+ Q + EA  L  ++   G
Sbjct: 969  LVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRG 1028

Query: 498  EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAG 550
              P      SL      AG+ ++A +   + E +   + PD F    N L+ G
Sbjct: 1029 IVPDLYTYNSLMLNLGLAGMVEQAKRM--YEELQLAGLEPDVFTY--NALIRG 1077



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/332 (20%), Positives = 144/332 (43%), Gaps = 10/332 (3%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           V+ ++    N+  Y+ LI    +   +EDA ++L  M   G+ P   T  + +  + K+G
Sbjct: 392 VMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSG 451

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
              +A E FE +++ G  P+    N+ + +    G+ +   ++ + +  +G+      Y 
Sbjct: 452 ETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYN 511

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            +++ +++ G V  A  + + M     +P +     L+++  +AG  D+A   FD M  +
Sbjct: 512 MMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDM 571

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
              P      ++++  GK+  + KA+ L   + +    P   ++  L+D   +   +  A
Sbjct: 572 KLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKNDEVELA 631

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFE--RII 544
            ++  K++ +   P      ++  +Y     E K   A  F    K+ M PD      ++
Sbjct: 632 LKMFSKMTVMDCKPDVLTYNTV--IYGLIK-ENKVNHAFWFFHQLKKSMHPDHVTICTLL 688

Query: 545 NGLLAGGFLQDAQRVHGLMEAQGFAASERLKV 576
            GL+  G + DA  +     A+ F    R +V
Sbjct: 689 PGLVKCGQIGDAISI-----ARDFMYQVRFRV 715



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 101/226 (44%)

Query: 248  LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
            L    F+   R Y  LID  AK   LE+A R+ ++M++ G  P+     +L++ Y K G+
Sbjct: 884  LVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGD 943

Query: 308  LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
             + A + F+ + + G +PD K Y  ++     AG+    +   + + ++G++     Y  
Sbjct: 944  TETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNR 1003

Query: 368  LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
            ++    +   +  A  + N MR     P L +   L+   G AG  +QA+  ++ +   G
Sbjct: 1004 IINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAG 1063

Query: 428  HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVL 473
             +PD     ++I  Y      + A  +   +  DG  P   TY  L
Sbjct: 1064 LEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQL 1109


>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Glycine max]
          Length = 905

 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 156/365 (42%), Gaps = 44/365 (12%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +   SF  ++  Y+  ID   K   ++ A +   ++   G+VPD VT T ++ +  KA  
Sbjct: 263 MKSNSFNADLVLYNVCIDCFGKVGKVDMAWKFFHELKSQGLVPDDVTFTSMIGVLCKAER 322

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D A E FE L S+   P    YN+MIM Y + G+     SL++     G   S   Y  
Sbjct: 323 VDEAVELFEELDSNKSVPCVYAYNTMIMGYGSVGKFNEAYSLLERQKRKGCIPSVIAYNC 382

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           +L    + G V  A +I   M+++   P L S  +L++   +AG+ + A    D M   G
Sbjct: 383 ILTCLGRKGKVEEALRILEAMKMDA-APNLTSYNILIDMLCKAGELEAALKVQDSMKEAG 441

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P+      MI    K   LD+A ++ L L+     P   T+  L+D LGR   +N+A 
Sbjct: 442 LFPNIITVNIMIDRLCKAQRLDEACSIFLGLDHKVCTPDSVTFCSLIDGLGRHGKVNDAY 501

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAG------------------------------- 516
            L  K+ + G+ P   +  SL   + + G                               
Sbjct: 502 MLYEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRGCSPDLMLLNNYMDCV 561

Query: 517 -----IEK-KALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
                IEK +AL    F E K + + PD   +  +I+GL+ GGF +D  ++   M+ QG 
Sbjct: 562 FKAGEIEKGRAL----FEEIKAQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGL 617

Query: 569 AASER 573
               R
Sbjct: 618 HLDTR 622



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 94/362 (25%), Positives = 158/362 (43%), Gaps = 13/362 (3%)

Query: 211 LAEWKELLQPSRIDWINLLDRLREQNTQL-YFKVAELVLSEESFQTNVRD-YSKLIDAHA 268
           L  + E+ QP  +  + ++ RL++    L YF+  E     ++ Q +  + Y+ L+   A
Sbjct: 90  LNTFDEMPQPELV--VGVIRRLKDVRVALHYFRWVE----RKTKQLHSPEAYNALLMLMA 143

Query: 269 KENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKK 328
           +   LE  E+IL++M+  G  P   T   +V  + K+  L  A    E++R   F+P   
Sbjct: 144 RTRNLEYLEQILEEMSMAGFGPSNNTCIEMVASFVKSRKLREAFGVIETMRKFKFRPAYS 203

Query: 329 VYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIM 388
            Y ++I A   A +    ++L+  M   G E +  ++  L+  FA+ G V  A  + + M
Sbjct: 204 AYTTLIGALSAAHEADPMLTLLRQMQEIGYEVTVHLFTTLICVFAREGRVDAALSLLDEM 263

Query: 389 RIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLL 448
           +   F   L    + ++ +G+ G  D A   F  +   G  PDD    SMI    K   +
Sbjct: 264 KSNSFNADLVLYNVCIDCFGKVGKVDMAWKFFHELKSQGLVPDDVTFTSMIGVLCKAERV 323

Query: 449 DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSL 508
           D+A+ L  EL+ +   P    Y  ++   G +   NEA  LL +    G  P       +
Sbjct: 324 DEAVELFEELDSNKSVPCVYAYNTMIMGYGSVGKFNEAYSLLERQKRKGCIPSVIAYNCI 383

Query: 509 CDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQ 566
                R G   K  +AL  LEA K    P+   +  +I+ L   G L+ A +V   M+  
Sbjct: 384 LTCLGRKG---KVEEALRILEAMKMDAAPNLTSYNILIDMLCKAGELEAALKVQDSMKEA 440

Query: 567 GF 568
           G 
Sbjct: 441 GL 442



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 128/297 (43%), Gaps = 5/297 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  Y+ LID   K   LE A ++   M E G+ P+I+T  +++    KA  LD A   F
Sbjct: 410 NLTSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQRLDEACSIF 469

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             L      PD   + S+I      G+      L + M+ SG   +  +Y +L+R+F +C
Sbjct: 470 LGLDHKVCTPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKC 529

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G      +I   M      P L      ++   +AG+ ++ R+ F+ +   G  PD R  
Sbjct: 530 GRKEDGHKIYKEMMHRGCSPDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVRSY 589

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
           + +I    K         L  E+++ G       Y +++D   +   +N+A QLL ++  
Sbjct: 590 SILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKT 649

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
            G  P      S+ D  A+  I++     + F EAK + +   D   ++   L  GF
Sbjct: 650 KGLQPTVVTYGSVIDGLAK--IDRLDEAYMLFEEAKSKAV---DLNVVVYSSLIDGF 701



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/253 (22%), Positives = 111/253 (43%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +  +    +VR YS LI    K    +D  ++  +M E G+  D     +++  + K+G 
Sbjct: 577 IKAQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGK 636

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +++A +  E +++ G QP    Y S+I       +      L +   +  ++ +  +Y +
Sbjct: 637 VNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSS 696

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+  F + G +  A  I   +  +   P   +   L++A  +A + D+A   F  M  L 
Sbjct: 697 LIDGFGKVGRIDEAYLILEELMQKGLTPNTYTWNCLLDALVKAEEIDEALVCFQNMKNLK 756

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P++   + M+    K    +KA     E++K G +P   TYT ++  L R+  + EA+
Sbjct: 757 CPPNEVTYSIMVNGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTTMISGLARVGNVLEAK 816

Query: 488 QLLGKISELGEAP 500
            L  +    G  P
Sbjct: 817 DLFERFKSSGGIP 829



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 98/438 (22%), Positives = 177/438 (40%), Gaps = 51/438 (11%)

Query: 184 PKPITGKCKLITDKILSLEK-EEDPSPLLAEWKELLQPSRIDWINLLDRL-REQNTQLYF 241
           P  IT    ++ D++   ++ +E  S  L    ++  P  + + +L+D L R       +
Sbjct: 444 PNIIT--VNIMIDRLCKAQRLDEACSIFLGLDHKVCTPDSVTFCSLIDGLGRHGKVNDAY 501

Query: 242 KVAELVLSEESFQT-NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
            + E +L  +S QT N   Y+ LI    K    ED  +I K+M   G  PD++     + 
Sbjct: 502 MLYEKML--DSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRGCSPDLMLLNNYMD 559

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
              KAG +++ +  FE +++ G  PD + Y+ +I   V  G  K    L   M   G+  
Sbjct: 560 CVFKAGEIEKGRALFEEIKAQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHL 619

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC-------------------- 400
               Y  ++  F + G V  A Q+   M+ +  QPT+ +                     
Sbjct: 620 DTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLF 679

Query: 401 ---------------TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKK 445
                          + L++ +G+ G  D+A    + +++ G  P+      ++ A  K 
Sbjct: 680 EEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNTYTWNCLLDALVKA 739

Query: 446 NLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQ 505
             +D+AL     ++     P   TY+++V+ L +++  N+A     ++ + G  P     
Sbjct: 740 EEIDEALVCFQNMKNLKCPPNEVTYSIMVNGLCKVRKFNKAFVFWQEMQKQGLKPNTITY 799

Query: 506 VSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEA 565
            ++    AR G     L+A    E  K   G  D     N ++ G  L +A +    M+A
Sbjct: 800 TTMISGLARVG---NVLEAKDLFERFKSSGGIPD-SACYNAMIEG--LSNANKA---MDA 850

Query: 566 QGFAASERLKVALISSQT 583
                  RLK   I S+T
Sbjct: 851 YILFEETRLKGCRIYSKT 868



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 111/273 (40%), Gaps = 8/273 (2%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E     N+   + +ID   K   L++A  I   ++     PD VT   L+    + G 
Sbjct: 437 MKEAGLFPNIITVNIMIDRLCKAQRLDEACSIFLGLDHKVCTPDSVTFCSLIDGLGRHGK 496

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           ++ A   +E +   G  P+  VY S+I  +   G+ + G  +   M+  G        L 
Sbjct: 497 VNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRGCSPD----LM 552

Query: 368 LLRSFAQC----GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
           LL ++  C    G++     +   ++ +   P + S ++L+    + G        F  M
Sbjct: 553 LLNNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEM 612

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483
              G   D R    +I  + K   ++KA  LL E++  G +P   TY  ++D L ++  +
Sbjct: 613 KEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKIDRL 672

Query: 484 NEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
           +EA  L  +           +  SL D + + G
Sbjct: 673 DEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVG 705



 Score = 42.4 bits (98), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 40/200 (20%), Positives = 85/200 (42%), Gaps = 6/200 (3%)

Query: 217 LLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           ++  S ID    + R+ E     Y  + EL+  ++    N   ++ L+DA  K   +++A
Sbjct: 692 VVYSSLIDGFGKVGRIDEA----YLILEELM--QKGLTPNTYTWNCLLDALVKAEEIDEA 745

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
               + M      P+ VT +++V+   K    ++A   ++ ++  G +P+   Y +MI  
Sbjct: 746 LVCFQNMKNLKCPPNEVTYSIMVNGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTTMISG 805

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
               G       L +   +SG       Y A++   +       A  +    R++  +  
Sbjct: 806 LARVGNVLEAKDLFERFKSSGGIPDSACYNAMIEGLSNANKAMDAYILFEETRLKGCRIY 865

Query: 397 LESCTLLVEAYGQAGDPDQA 416
            ++C +L++A  +A   +QA
Sbjct: 866 SKTCVVLLDALHKADCLEQA 885


>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
          Length = 878

 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 145/305 (47%), Gaps = 9/305 (2%)

Query: 220 PSRIDWINLLDRLREQN-TQLYFKVAELVLSEESFQT--NVRDYSKLIDAHAKENCLEDA 276
           P    + NLL  L ++N +Q   ++  ++  +    +  +V  Y+ +++   KE   + A
Sbjct: 161 PDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKA 220

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
                +M + GI+PD+VT + ++    KA  +D+A E   ++  +G  PD   YNS++  
Sbjct: 221 YSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHG 280

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           Y ++GQPK  +  +  M + G+E +   Y +L+    + G    A +I + M     +P 
Sbjct: 281 YCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPD 340

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           + +   L++ Y   G   +  +  D M+R G +PD      +I AY K+  +D+A+ +  
Sbjct: 341 IATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFS 400

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSL------CD 510
           ++ + G  P    Y  ++D L +   +++A     ++ + G  P   +  SL      CD
Sbjct: 401 KMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCD 460

Query: 511 MYARA 515
            + +A
Sbjct: 461 KWDKA 465



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 139/316 (43%), Gaps = 8/316 (2%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  YS +I A  K   ++ A  +L  M +NG++PD +T   ++H Y  +G    A    
Sbjct: 235 DVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTL 294

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + +RS G +P+   Y+S++      G+      + D M   G+E     Y  LL+ +A  
Sbjct: 295 KKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATK 354

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +     + ++M     QP      +L+ AY +    DQA   F  M + G  P+  C 
Sbjct: 355 GALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCY 414

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I    K   +D A+    ++  +G  P    YT L+  L      ++AE+L+ ++ +
Sbjct: 415 GTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLD 474

Query: 496 LGEAPPFKIQVSLCDMYARAG--IEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGG 551
            G         S+ D + + G  IE + L    F    +  + PD   +  +I+G    G
Sbjct: 475 RGICLNTIFFNSIIDSHCKEGRVIESEKL----FDLMVRIGVKPDIITYNTLIDGCCLAG 530

Query: 552 FLQDAQRVHGLMEAQG 567
            + +A ++   M + G
Sbjct: 531 KMDEATKLLASMVSVG 546



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 72/327 (22%), Positives = 143/327 (43%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++     Q +   ++ LI A+AK+  ++ A  +  KM ++G+ P++V    ++ +  K+G
Sbjct: 366 LMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSG 425

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           ++D A   FE +   G  P+  VY S+I       +      L+  M+  GI  +   + 
Sbjct: 426 SVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFN 485

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           +++ S  + G V  + ++ ++M     +P + +   L++    AG  D+A      M+ +
Sbjct: 486 SIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSV 545

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G KPD     ++I  Y + + +D AL L  E+   G  P   TY +++  L   +    A
Sbjct: 546 GVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAA 605

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
           ++L   I++ G          +     +  +  +AL+    L     Q+    F  +I  
Sbjct: 606 KELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGA 665

Query: 547 LLAGGFLQDAQRVHGLMEAQGFAASER 573
           LL  G + +A+ +     A G     R
Sbjct: 666 LLKCGRMDEAKDLFAAHSANGLVPDVR 692



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/305 (21%), Positives = 140/305 (45%), Gaps = 7/305 (2%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNEN---GIVPDIVTSTVLVHMYSK 304
           ++E     +V  Y+ L+     EN  ++A  +L  M ++   G  PD+V+   +++ + K
Sbjct: 154 MTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFK 213

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
            G+ D+A   +  +   G  PD   Y+S+I A   A      M +++ M+ +G+      
Sbjct: 214 EGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMT 273

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
           Y ++L  +   G  + A      MR +  +P + + + L+    + G   +AR  FD M 
Sbjct: 274 YNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMT 333

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
           + G +PD     +++  Y  K  L +   LL  + ++G +P    + +L+    + + ++
Sbjct: 334 KRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVD 393

Query: 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFER 542
           +A  +  K+ + G  P      ++ D+  ++G    A+  L F +   E + P+   +  
Sbjct: 394 QAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAM--LYFEQMIDEGLTPNIIVYTS 451

Query: 543 IINGL 547
           +I+GL
Sbjct: 452 LIHGL 456



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 68/300 (22%), Positives = 118/300 (39%), Gaps = 8/300 (2%)

Query: 288 IVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGM 347
           + P + T  +L+    +AG LD    A  ++   GF+ D   +  ++       +    M
Sbjct: 88  VTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAM 147

Query: 348 SLVDMMITS-GIERSEEIYLALLRSFAQCGDVRGAGQITNIM---RIEEFQPTLESCTLL 403
            +V   +T  G       Y  LL+        + A ++ ++M   R     P + S   +
Sbjct: 148 DIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTV 207

Query: 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGF 463
           +  + + GD D+A S +  M+  G  PD    +S+IAA  K   +DKA+ +L  + K+G 
Sbjct: 208 LNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGV 267

Query: 464 EPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
            P   TY  ++          EA   L K+   G  P      SL +   + G   +A +
Sbjct: 268 MPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARK 327

Query: 524 ALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
              F    K  + PD   +  ++ G    G L +   +  LM   G      +   LI +
Sbjct: 328 I--FDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICA 385



 Score = 45.8 bits (107), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 43/195 (22%), Positives = 86/195 (44%), Gaps = 6/195 (3%)

Query: 211 LAEWKELLQ----PSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDA 266
           LA +KE++     P+ I +  +L  L         K   + +++   Q  +  Y+ ++  
Sbjct: 571 LALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHG 630

Query: 267 HAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPD 326
             K N  ++A R+ + +    +  +  T  +++    K G +D AK+ F +  ++G  PD
Sbjct: 631 LCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPD 690

Query: 327 KKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITN 386
            + Y+ M    +  G  +    L   M  +G      +  +++R   Q GD+  AG  T 
Sbjct: 691 VRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDITRAG--TY 748

Query: 387 IMRIEEFQPTLESCT 401
           +  I+E   +LE+ T
Sbjct: 749 LFMIDEKHFSLEAST 763



 Score = 44.3 bits (103), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 37/220 (16%), Positives = 92/220 (41%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           ++  Y  LI+ + + + ++DA  + K+M  +G+ P+I+T  +++           AKE +
Sbjct: 550 DIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELY 609

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
            S+   G Q +   YN ++            + +   +  + ++     +  ++ +  +C
Sbjct: 610 VSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKC 669

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A  +          P + + +L+ E   + G  ++    F  M   G   D R  
Sbjct: 670 GRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRML 729

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
            S++    ++  + +A   L  +++  F    +T + L++
Sbjct: 730 NSIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTASFLLE 769


>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
 gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
          Length = 932

 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 82/344 (23%), Positives = 158/344 (45%), Gaps = 13/344 (3%)

Query: 230 DRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIV 289
           DR RE    L+ ++ E  L  +     V  ++KL+ A  K+  + ++ER+  K+ + G+ 
Sbjct: 277 DRARE----LFDEMLECCLCPD-----VTTFNKLVHALCKKGFVLESERLFDKVLKRGVC 327

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL 349
           P++ T  + +    K G+LDRA      +   G +PD   YN++I       +       
Sbjct: 328 PNLFTFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEEC 387

Query: 350 VDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409
           +  M+  G E ++  Y +++  + + G V  A +I      + F+P   +   LV  + Q
Sbjct: 388 LHKMVNGGFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQ 447

Query: 410 AGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPAT 469
            GDPDQA + F   +  G +P      ++I    ++ L+  AL L+ E+ + G +P   T
Sbjct: 448 DGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWT 507

Query: 470 YTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLE 529
           Y ++++ L ++  +++A  L+G     G  P      +L D Y R      A++ +  + 
Sbjct: 508 YNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMW 567

Query: 530 AKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAAS 571
           +  + M PD   +  ++NGL      ++   +   M  +G A +
Sbjct: 568 S--QGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPN 609



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 153/354 (43%), Gaps = 21/354 (5%)

Query: 203 KEEDPSPLLAEWKELL----QPSRIDWINLLDRLREQNTQLYFKVAELV--LSEESFQTN 256
           ++ DP   +A +K+ L    +PS I +  L+  L +Q   L     +L+  ++E+  + +
Sbjct: 447 QDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQG--LILPALQLMNEMAEKGCKPD 504

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           +  Y+ +I+   K  CL DA  ++      G +PDI T   LV  Y +   LD A E   
Sbjct: 505 IWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVN 564

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
            + S G  PD   YN+++       + +  M +   M   G   +   Y  ++ S     
Sbjct: 565 RMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSK 624

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
            V  A  +   M+ +   P + S   L+  + + GD D A   F  M +         T 
Sbjct: 625 KVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGMEKQYDVSHTTATY 684

Query: 437 SMI-AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
           ++I +A+ ++  +  AL L  E++K+G +P   TY VL+D   +   +N+  + L +  E
Sbjct: 685 NIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLIDGFCKTGNVNQGYKFLLENIE 744

Query: 496 LGEAPPF----KIQVSLCDMYARAGIEKKALQALGFLEAK-KEQMGPDDFERII 544
            G  P      ++   LC       +E K  +A+G +    ++ + PD    I 
Sbjct: 745 KGFIPSLTTFGRVLNCLC-------VEHKVQEAVGIIHLMVQKDIVPDTVNTIF 791



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 137/322 (42%), Gaps = 4/322 (1%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
            +S E  + +V  Y+ +I    +++ + +AE  L KM   G  P+  T   ++  Y K G
Sbjct: 355 CVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCKKG 414

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            +  A    +     GF+PD+  Y S++  +   G P   M++    +  G+  S  +Y 
Sbjct: 415 MVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYN 474

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L++   Q G +  A Q+ N M  +  +P + +  L++    + G    A       I  
Sbjct: 475 TLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITK 534

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G  PD     +++  Y ++  LD A+ L+  +   G  P   TY  L++ L +     E 
Sbjct: 535 GCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEV 594

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERII 544
            ++   ++E G AP      ++ +    +    +A+  LG  E K + + PD   F  +I
Sbjct: 595 MEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLG--EMKSKGLTPDVVSFGTLI 652

Query: 545 NGLLAGGFLQDAQRVHGLMEAQ 566
            G    G L  A  +   ME Q
Sbjct: 653 TGFCKVGDLDGAYGLFRGMEKQ 674



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 72/327 (22%), Positives = 136/327 (41%), Gaps = 7/327 (2%)

Query: 240 YFKVAELV---LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTST 296
           YF  A  V   + ++  +++V  Y+  I +  +      A R+L+ M   G   + V   
Sbjct: 205 YFNQAHKVYMRMKDKKVESDVYTYTIRIKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYC 264

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
            +V  + + G+ DRA+E F+ +      PD   +N ++ A    G       L D ++  
Sbjct: 265 TVVTGFYEFGDNDRARELFDEMLECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKR 324

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
           G+  +   +   ++   + G +  A ++   +  E  +P + +   ++    +     +A
Sbjct: 325 GVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEA 384

Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476
                 M+  G +P+D    S+I  Y KK ++  A  +L +    GF+P   TY  LV+ 
Sbjct: 385 EECLHKMVNGGFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNG 444

Query: 477 LGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG 536
             +    ++A  +       G  P   +  +L     + G+   ALQ +   E  ++   
Sbjct: 445 FCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMN--EMAEKGCK 502

Query: 537 PD--DFERIINGLLAGGFLQDAQRVHG 561
           PD   +  IINGL   G L DA  + G
Sbjct: 503 PDIWTYNLIINGLCKMGCLSDANHLIG 529



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 72/339 (21%), Positives = 137/339 (40%), Gaps = 13/339 (3%)

Query: 249 SEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLV---HMYSKA 305
           +++ F+  +  Y  ++          + E +L +M  N  + + +   V V     Y + 
Sbjct: 111 TKQGFKHTLFTYKSMLQKLGFHGKFNEMENLLSEMRSN--LDNTLLEGVYVEAMRFYGRK 168

Query: 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
           G +  A + FE +      P    YN+++   V  G       +   M    +E     Y
Sbjct: 169 GKIQEAVDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESDVYTY 228

Query: 366 LALLRSFAQCGDVRGAGQIT-NIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
              ++SF + G    A ++  N+  +  F   +  CT +V  + + GD D+AR  FD M+
Sbjct: 229 TIRIKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCT-VVTGFYEFGDNDRARELFDEML 287

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
                PD      ++ A  KK  + ++  L  ++ K G  P   T+ + +  L +   ++
Sbjct: 288 ECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLD 347

Query: 485 EAEQLLGKISELGEAPP-FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF--E 541
            A +LLG +S  G  P        +C +  ++ + +        +    E   P+DF   
Sbjct: 348 RAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFE---PNDFTYN 404

Query: 542 RIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
            II+G    G + DA R+      +GF   E    +L++
Sbjct: 405 SIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVN 443


>gi|168034142|ref|XP_001769572.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679114|gb|EDQ65565.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 871

 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 137/284 (48%), Gaps = 10/284 (3%)

Query: 215 KELLQPSRIDWINLL-----DRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAK 269
           KE ++P RI + +L+       L E + +++ +     +     + ++  Y+ LIDA  K
Sbjct: 298 KEGVEPDRITFNSLIAVCSRGSLWEDSQRVFAE-----MQRRGIEQDIFTYNTLIDAVCK 352

Query: 270 ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKV 329
              +E A  I+  M    I P++VT + ++  Y K G  + A   +  ++  G +PD+  
Sbjct: 353 GGQMELAASIMSSMRLKNISPNVVTYSTMIDGYGKLGCFEEAIGLYHDMKESGVRPDRVS 412

Query: 330 YNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389
           YN++I  Y   G+    ++    M   G++     Y AL+ ++ + G  + A  + + M+
Sbjct: 413 YNTLIDIYAKLGRFDDALTACKDMERVGLKADVVTYNALIDAYGKQGKYKDAAGLFDKMK 472

Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD 449
            E   P + + + L++AY +AG    A S F    R G KPD    +S+I +  K  L++
Sbjct: 473 AEGLVPNVLTYSALIDAYSKAGMHQDATSIFVEFKRAGLKPDVVLYSSLIDSCCKCGLVE 532

Query: 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
            A+ LL E+ + G +P   TY  L+D  GR   ++  E   G +
Sbjct: 533 DAVVLLQEMTQAGIQPNIVTYNSLIDAYGRNGQVDNVEAAKGNM 576



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 115/257 (44%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++ LI   ++ +  ED++R+  +M   GI  DI T   L+    K G ++ A     S+R
Sbjct: 308 FNSLIAVCSRGSLWEDSQRVFAEMQRRGIEQDIFTYNTLIDAVCKGGQMELAASIMSSMR 367

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
                P+   Y++MI  Y   G  +  + L   M  SG+      Y  L+  +A+ G   
Sbjct: 368 LKNISPNVVTYSTMIDGYGKLGCFEEAIGLYHDMKESGVRPDRVSYNTLIDIYAKLGRFD 427

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A      M     +  + +   L++AYG+ G    A   FD M   G  P+    +++I
Sbjct: 428 DALTACKDMERVGLKADVVTYNALIDAYGKQGKYKDAAGLFDKMKAEGLVPNVLTYSALI 487

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            AY K  +   A ++ +E ++ G +P    Y+ L+D   +  L+ +A  LL ++++ G  
Sbjct: 488 DAYSKAGMHQDATSIFVEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQ 547

Query: 500 PPFKIQVSLCDMYARAG 516
           P      SL D Y R G
Sbjct: 548 PNIVTYNSLIDAYGRNG 564



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/309 (22%), Positives = 131/309 (42%), Gaps = 36/309 (11%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG-NLDRA 311
           F  NV  YS ++ A+ +     +A ++ + M + G  P+++T   ++    K G +L +A
Sbjct: 230 FGNNVYAYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLITYNTIIDACGKGGVDLKKA 289

Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
            + FE ++  G +PD+  +NS+I         +    +   M   GIE+    Y  L+ +
Sbjct: 290 LDIFEEMQKEGVEPDRITFNSLIAVCSRGSLWEDSQRVFAEMQRRGIEQDIFTYNTLIDA 349

Query: 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAG-----------------DPD 414
             + G +  A  I + MR++   P + + + +++ YG+ G                  PD
Sbjct: 350 VCKGGQMELAASIMSSMRLKNISPNVVTYSTMIDGYGKLGCFEEAIGLYHDMKESGVRPD 409

Query: 415 QARSN-----------FDY-------MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           +   N           FD        M R+G K D     ++I AYGK+     A  L  
Sbjct: 410 RVSYNTLIDIYAKLGRFDDALTACKDMERVGLKADVVTYNALIDAYGKQGKYKDAAGLFD 469

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
           +++ +G  P   TY+ L+D   +  +  +A  +  +    G  P   +  SL D   + G
Sbjct: 470 KMKAEGLVPNVLTYSALIDAYSKAGMHQDATSIFVEFKRAGLKPDVVLYSSLIDSCCKCG 529

Query: 517 IEKKALQAL 525
           + + A+  L
Sbjct: 530 LVEDAVVLL 538



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 107/245 (43%), Gaps = 42/245 (17%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
            + +V  Y+ LIDA+ K+   +DA  +  KM   G+VP+++T + L+  YSKAG    A 
Sbjct: 441 LKADVVTYNALIDAYGKQGKYKDAAGLFDKMKAEGLVPNVLTYSALIDAYSKAGMHQDAT 500

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
             F   +  G +PD  +Y+S+I +    G  +  + L+  M  +GI              
Sbjct: 501 SIFVEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGI-------------- 546

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM-IRLGHKPD 431
                                QP + +   L++AYG+ G  D   +    M I + +K  
Sbjct: 547 ---------------------QPNIVTYNSLIDAYGRNGQVDNVEAAKGNMPINVFNKVG 585

Query: 432 DRCTASMIAAY-GKKNLLDK-----ALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
           DR T  +      ++N  D      A+++  E+++ G +P   T++ +++   R   + E
Sbjct: 586 DRSTEIICKTLTSQQNANDHTGVLAAVSVFHEMQQFGLKPNVVTFSAILNACSRCSSLQE 645

Query: 486 AEQLL 490
           A  LL
Sbjct: 646 ASVLL 650



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 61/290 (21%), Positives = 126/290 (43%), Gaps = 1/290 (0%)

Query: 295 STVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMI 354
           +++++    + G ++ A + F   +  GF  +   Y++M+ AY  +G+ +  + +   M 
Sbjct: 202 ASIMISTLGRLGKVEIALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMK 261

Query: 355 TSGIERSEEIYLALLRSFAQCG-DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDP 413
            +G + +   Y  ++ +  + G D++ A  I   M+ E  +P   +   L+    +    
Sbjct: 262 KAGCKPNLITYNTIIDACGKGGVDLKKALDIFEEMQKEGVEPDRITFNSLIAVCSRGSLW 321

Query: 414 DQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVL 473
           + ++  F  M R G + D     ++I A  K   ++ A +++  +      P   TY+ +
Sbjct: 322 EDSQRVFAEMQRRGIEQDIFTYNTLIDAVCKGGQMELAASIMSSMRLKNISPNVVTYSTM 381

Query: 474 VDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE 533
           +D  G+L    EA  L   + E G  P      +L D+YA+ G    AL A   +E    
Sbjct: 382 IDGYGKLGCFEEAIGLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALTACKDMERVGL 441

Query: 534 QMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQT 583
           +     +  +I+     G  +DA  +   M+A+G   +     ALI + +
Sbjct: 442 KADVVTYNALIDAYGKQGKYKDAAGLFDKMKAEGLVPNVLTYSALIDAYS 491


>gi|302821471|ref|XP_002992398.1| hypothetical protein SELMODRAFT_135281 [Selaginella moellendorffii]
 gi|300139814|gb|EFJ06548.1| hypothetical protein SELMODRAFT_135281 [Selaginella moellendorffii]
          Length = 698

 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/326 (22%), Positives = 151/326 (46%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N++ Y+ L+  ++++  L+  + +   + + G+  + +T  +L+  Y++AG +DR +  +
Sbjct: 316 NLKAYNTLLGGYSRKGQLQQIDTVKTLLRDTGMSINKITYCLLIDAYARAGLMDRLEALY 375

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + +R    +P+  +Y  MI  Y + GQ + G+ L+  M  +G+     +Y  ++ +F + 
Sbjct: 376 QEMRDCDIRPNTYMYARMITIYRDTGQWQKGVKLLREMQQAGVTPDAHVYNVIINTFGRT 435

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
             +  A      M+    +P + S   L++A  +AG P +AR  +  M+  G  P  +  
Sbjct: 436 RQLEQARIAFFKMQDGGIEPDVVSWNSLIDACCKAGQPLEARKLYYKMVNDGCAPTAQTF 495

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +I   G+    +    ++ E+   G  P   TYT LVD   + +L  +A + L  + E
Sbjct: 496 NIVIHGLGEHKRWNDVNEMVEEMRSKGMFPNVVTYTTLVDVYAQARLFQDAVECLQTMKE 555

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
            G  P      +L + YA+ G+ ++ L  L  +E +  ++       +IN     G  Q+
Sbjct: 556 DGMGPSPTAYSALANAYAQLGMCEQTLHVLQTMEKENIEINLAMLNLLINAFSMAGRSQE 615

Query: 556 AQRVHGLMEAQGFAASERLKVALISS 581
           A  V   ++  G  A +     L+ +
Sbjct: 616 AFAVFEYIKEAGLTADKITYTTLMKA 641



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 123/296 (41%), Gaps = 38/296 (12%)

Query: 258 RDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD--RAKEAF 315
           R Y+ L+ A+A+      A   L KM   G  PD+V+ T ++    + G +D       F
Sbjct: 177 RGYNALVGAYAQNRDYGKALETLSKMKTLGFPPDVVSYTHVIQA-CRHGVVDIYTGFRLF 235

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + +++ G Q D KVYN +I A   A +P  GM  ++ +  SG+    + Y++L+ S  + 
Sbjct: 236 QEMQAEGVQVDGKVYNDLIFACGQAHKPNEGMFFLEKLQASGLVADRDSYISLMLSLGKH 295

Query: 376 GDVRGAGQITNIMRIEEFQPTLE-----------------------------------SC 400
           G    A  +   M+    +P L+                                   + 
Sbjct: 296 GRTAEAEALLEEMKWYGLRPNLKAYNTLLGGYSRKGQLQQIDTVKTLLRDTGMSINKITY 355

Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
            LL++AY +AG  D+  + +  M     +P+    A MI  Y       K + LL E+++
Sbjct: 356 CLLIDAYARAGLMDRLEALYQEMRDCDIRPNTYMYARMITIYRDTGQWQKGVKLLREMQQ 415

Query: 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
            G  P    Y V+++  GR + + +A     K+ + G  P      SL D   +AG
Sbjct: 416 AGVTPDAHVYNVIINTFGRTRQLEQARIAFFKMQDGGIEPDVVSWNSLIDACCKAG 471



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/355 (21%), Positives = 155/355 (43%), Gaps = 40/355 (11%)

Query: 220 PSRIDWINLLDRLREQNTQLY--FKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           P  + + +++   R     +Y  F++ +  +  E  Q + + Y+ LI A  + +   +  
Sbjct: 209 PDVVSYTHVIQACRHGVVDIYTGFRLFQ-EMQAEGVQVDGKVYNDLIFACGQAHKPNEGM 267

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
             L+K+  +G+V D  +   L+    K G    A+   E ++ +G +P+ K YN+++  Y
Sbjct: 268 FFLEKLQASGLVADRDSYISLMLSLGKHGRTAEAEALLEEMKWYGLRPNLKAYNTLLGGY 327

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG---------------DVRG-- 380
              GQ +   ++  ++  +G+  ++  Y  L+ ++A+ G               D+R   
Sbjct: 328 SRKGQLQQIDTVKTLLRDTGMSINKITYCLLIDAYARAGLMDRLEALYQEMRDCDIRPNT 387

Query: 381 --AGQITNIMR-----------IEEFQ-----PTLESCTLLVEAYGQAGDPDQARSNFDY 422
               ++  I R           + E Q     P      +++  +G+    +QAR  F  
Sbjct: 388 YMYARMITIYRDTGQWQKGVKLLREMQQAGVTPDAHVYNVIINTFGRTRQLEQARIAFFK 447

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
           M   G +PD     S+I A  K     +A  L  ++  DG  P   T+ +++  LG  + 
Sbjct: 448 MQDGGIEPDVVSWNSLIDACCKAGQPLEARKLYYKMVNDGCAPTAQTFNIVIHGLGEHKR 507

Query: 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP 537
            N+  +++ ++   G  P      +L D+YA+A + + A++ L  +  K++ MGP
Sbjct: 508 WNDVNEMVEEMRSKGMFPNVVTYTTLVDVYAQARLFQDAVECLQTM--KEDGMGP 560



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 101/242 (41%), Gaps = 7/242 (2%)

Query: 226 INLLDRLR--EQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKM 283
           IN   R R  EQ    +FK     + +   + +V  ++ LIDA  K     +A ++  KM
Sbjct: 429 INTFGRTRQLEQARIAFFK-----MQDGGIEPDVVSWNSLIDACCKAGQPLEARKLYYKM 483

Query: 284 NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343
             +G  P   T  +++H   +    +   E  E +RS G  P+   Y +++  Y  A   
Sbjct: 484 VNDGCAPTAQTFNIVIHGLGEHKRWNDVNEMVEEMRSKGMFPNVVTYTTLVDVYAQARLF 543

Query: 344 KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403
           +  +  +  M   G+  S   Y AL  ++AQ G       +   M  E  +  L    LL
Sbjct: 544 QDAVECLQTMKEDGMGPSPTAYSALANAYAQLGMCEQTLHVLQTMEKENIEINLAMLNLL 603

Query: 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGF 463
           + A+  AG   +A + F+Y+   G   D     +++ A  +   LD+   +  E+ K G 
Sbjct: 604 INAFSMAGRSQEAFAVFEYIKEAGLTADKITYTTLMKALIRAEKLDEVSGVFDEMIKAGC 663

Query: 464 EP 465
            P
Sbjct: 664 RP 665


>gi|334186712|ref|NP_001190774.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|223635614|sp|P0C8Q3.1|PP326_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g19890
 gi|332658842|gb|AEE84242.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 701

 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 147/319 (46%), Gaps = 5/319 (1%)

Query: 214 WKELLQPSRIDWINLLDRLREQN-TQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC 272
           WK    P+      L+D L ++  T+  F++   ++  ++++ NV  Y+ +I  + KE+ 
Sbjct: 318 WK----PNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDK 373

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           L  AE +  +M E G+ P++ T T L++ + KAG+  RA E    +   GF P+   YN+
Sbjct: 374 LNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNA 433

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
            I +     +      L++   + G+E     Y  L++   +  D+  A      M    
Sbjct: 434 AIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCRMNKTG 493

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
           F+  +    +L+ A+ +     ++   F  ++ LG  P      SMI+ Y K+  +D AL
Sbjct: 494 FEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTSMISCYCKEGDIDLAL 553

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
                +++ G  P   TY  L+  L +  +++EA +L   + + G +PP   +V+L   Y
Sbjct: 554 KYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPPEVTRVTLAYEY 613

Query: 513 ARAGIEKKALQALGFLEAK 531
            +      A+  L  L+ K
Sbjct: 614 CKRNDSANAMILLEPLDKK 632



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 123/300 (41%), Gaps = 42/300 (14%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           L +A  ++  M   G+ P  +T   ++ +  + G ++ A+  F+ +   G  PD   Y  
Sbjct: 163 LNEAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVPDSSSYKL 222

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           M++     G+    +   D  +T  I+R                                
Sbjct: 223 MVIGCFRDGK----IQEADRWLTGMIQRG------------------------------- 247

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
           F P   +CTL++ A  + G  ++A   F  MI LG KP+     S+I    KK  + +A 
Sbjct: 248 FIPDNATCTLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAF 307

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP-FKIQVSLCDM 511
            +L E+ ++G++P   T+T L+D L +     +A +L  K+       P      S+   
Sbjct: 308 EMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGG 367

Query: 512 YARAGIEKKALQA-LGFLEAKKEQMGP--DDFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
           Y +   E K  +A + F   K++ + P  + +  +ING    G    A  +  LM  +GF
Sbjct: 368 YCK---EDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGF 424


>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 859

 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 125/253 (49%), Gaps = 1/253 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           ++++    N   ++ LI AHAK   +++A  +  +M   G+ PD+VT + L+  + + G 
Sbjct: 430 MADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGR 489

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL- 366
           L  A E F  + S G +P+  VY+S+I  +   G       LV  M++ GI R   ++  
Sbjct: 490 LADAMEKFSQMISIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKGIPRPNIVFFS 549

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           +++ S    G V  A  + N++     +PT+ +   L++ Y   G  ++A    D M+ +
Sbjct: 550 SIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSV 609

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G +PD     ++++ Y K   +D  L L  E+     +P   TY++++D L      + A
Sbjct: 610 GIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGRTSAA 669

Query: 487 EQLLGKISELGEA 499
           +++  ++ + G A
Sbjct: 670 KKMFHEMIDSGTA 682



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/309 (22%), Positives = 136/309 (44%), Gaps = 1/309 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  ++ +I    K+  +  A  ++ +M + G+ PD+VT   +V    KA  +D+A+   
Sbjct: 263 DVVSFNTVIHGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVL 322

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G +PD   Y ++I  Y  +G  K    +   M + G+      + + + S  + 
Sbjct: 323 RQMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKH 382

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G  + A +I   M  +   P L S ++L+  Y   G      + F  M   G   +  C 
Sbjct: 383 GRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCF 442

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +I+A+ K+ ++D+A+ +  E++  G  P   TY+ L+    R+  + +A +   ++  
Sbjct: 443 NILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMIS 502

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKK-EQMGPDDFERIINGLLAGGFLQ 554
           +G  P   +  SL   +   G   KA + +  + +K   +     F  II+ L   G + 
Sbjct: 503 IGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVM 562

Query: 555 DAQRVHGLM 563
           DA  V  L+
Sbjct: 563 DAHDVFNLV 571



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/286 (21%), Positives = 126/286 (44%), Gaps = 5/286 (1%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELV---LSEESFQTNVRDYSKLIDAHAKENCLE 274
           L+P+ + + +L+         +  K  ELV   +S+   + N+  +S +I +   E  + 
Sbjct: 505 LEPNTVVYHSLIHGFCMHGDLV--KAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVM 562

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           DA  +   +   G  P IVT   L+  Y   G +++A    +++ S G +PD   YN+++
Sbjct: 563 DAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLV 622

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
             Y  +G+   G+ L   M+   ++ +   Y  +L      G    A ++ + M      
Sbjct: 623 SGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGTA 682

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
             +++  +L++   +    D+A + F  +  +  K D     ++I A  K    ++A +L
Sbjct: 683 VDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTVINALYKVRRREEANDL 742

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
              +   G  P  +TY V++  L +   + EA+ +   + + G AP
Sbjct: 743 FAAISTSGLVPNVSTYGVMIHNLLKEGSVEEADTMFSSMEKSGCAP 788


>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
 gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
          Length = 782

 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 145/305 (47%), Gaps = 9/305 (2%)

Query: 220 PSRIDWINLLDRLREQN-TQLYFKVAELVLSEESFQT--NVRDYSKLIDAHAKENCLEDA 276
           P    + NLL  L ++N +Q   ++  ++  +    +  +V  Y+ +++   KE   + A
Sbjct: 161 PDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKA 220

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
                +M + GI+PD+VT + ++    KA  +D+A E   ++  +G  PD   YNS++  
Sbjct: 221 YSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHG 280

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           Y ++GQPK  +  +  M + G+E +   Y +L+    + G    A +I + M     +P 
Sbjct: 281 YCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPD 340

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           + +   L++ Y   G   +  +  D M+R G +PD      +I AY K+  +D+A+ +  
Sbjct: 341 IATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFS 400

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSL------CD 510
           ++ + G  P    Y  ++D L +   +++A     ++ + G  P   +  SL      CD
Sbjct: 401 KMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCD 460

Query: 511 MYARA 515
            + +A
Sbjct: 461 KWDKA 465



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 139/316 (43%), Gaps = 8/316 (2%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  YS +I A  K   ++ A  +L  M +NG++PD +T   ++H Y  +G    A    
Sbjct: 235 DVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTL 294

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + +RS G +P+   Y+S++      G+      + D M   G+E     Y  LL+ +A  
Sbjct: 295 KKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATK 354

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +     + ++M     QP      +L+ AY +    DQA   F  M + G  P+  C 
Sbjct: 355 GALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCY 414

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I    K   +D A+    ++  +G  P    YT L+  L      ++AE+L+ ++ +
Sbjct: 415 GTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLD 474

Query: 496 LGEAPPFKIQVSLCDMYARAG--IEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGG 551
            G         S+ D + + G  IE + L    F    +  + PD   +  +I+G    G
Sbjct: 475 RGICLNTIFFNSIIDSHCKEGRVIESEKL----FDLMVRIGVKPDIITYNTLIDGCCLAG 530

Query: 552 FLQDAQRVHGLMEAQG 567
            + +A ++   M + G
Sbjct: 531 KMDEATKLLASMVSVG 546



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 139/314 (44%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++ LI A+AK+  ++ A  +  KM ++G+ P++V    ++ +  K+G++D A   FE + 
Sbjct: 379 FNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMI 438

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P+  VY S+I       +      L+  M+  GI  +   + +++ S  + G V 
Sbjct: 439 DEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVI 498

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            + ++ ++M     +P + +   L++    AG  D+A      M+ +G KPD     ++I
Sbjct: 499 ESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLI 558

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             Y + + +D AL L  E+   G  P   TY +++  L   +    A++L   I++ G  
Sbjct: 559 NGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQ 618

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
                   +     +  +  +AL+    L     Q+    F  +I  LL  G + +A+ +
Sbjct: 619 LELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDL 678

Query: 560 HGLMEAQGFAASER 573
                A G     R
Sbjct: 679 FAAHSANGLVPDVR 692



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 66/297 (22%), Positives = 137/297 (46%), Gaps = 7/297 (2%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNEN---GIVPDIVTSTVLVHMYSKAGNLDRAK 312
           +V  Y+ L+     EN  ++A  +L  M ++   G  PD+V+   +++ + K G+ D+A 
Sbjct: 162 DVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAY 221

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
             +  +   G  PD   Y+S+I A   A      M +++ M+ +G+      Y ++L  +
Sbjct: 222 STYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGY 281

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
              G  + A      MR +  +P + + + L+    + G   +AR  FD M + G +PD 
Sbjct: 282 CSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDI 341

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               +++  Y  K  L +   LL  + ++G +P    + +L+    + + +++A  +  K
Sbjct: 342 ATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSK 401

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGL 547
           + + G  P      ++ D+  ++G    A+  L F +   E + P+   +  +I+GL
Sbjct: 402 MRQHGLNPNVVCYGTVIDVLCKSGSVDDAM--LYFEQMIDEGLTPNIIVYTSLIHGL 456



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 68/300 (22%), Positives = 118/300 (39%), Gaps = 8/300 (2%)

Query: 288 IVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGM 347
           + P + T  +L+    +AG LD    A  ++   GF+ D   +  ++       +    M
Sbjct: 88  VTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAM 147

Query: 348 SLVDMMITS-GIERSEEIYLALLRSFAQCGDVRGAGQITNIM---RIEEFQPTLESCTLL 403
            +V   +T  G       Y  LL+        + A ++ ++M   R     P + S   +
Sbjct: 148 DIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTV 207

Query: 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGF 463
           +  + + GD D+A S +  M+  G  PD    +S+IAA  K   +DKA+ +L  + K+G 
Sbjct: 208 LNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGV 267

Query: 464 EPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
            P   TY  ++          EA   L K+   G  P      SL +   + G   +A +
Sbjct: 268 MPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARK 327

Query: 524 ALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
              F    K  + PD   +  ++ G    G L +   +  LM   G      +   LI +
Sbjct: 328 I--FDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICA 385



 Score = 45.4 bits (106), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 43/195 (22%), Positives = 86/195 (44%), Gaps = 6/195 (3%)

Query: 211 LAEWKELLQ----PSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDA 266
           LA +KE++     P+ I +  +L  L         K   + +++   Q  +  Y+ ++  
Sbjct: 571 LALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHG 630

Query: 267 HAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPD 326
             K N  ++A R+ + +    +  +  T  +++    K G +D AK+ F +  ++G  PD
Sbjct: 631 LCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPD 690

Query: 327 KKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITN 386
            + Y+ M    +  G  +    L   M  +G      +  +++R   Q GD+  AG  T 
Sbjct: 691 VRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDITRAG--TY 748

Query: 387 IMRIEEFQPTLESCT 401
           +  I+E   +LE+ T
Sbjct: 749 LFMIDEKHFSLEAST 763



 Score = 44.3 bits (103), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 37/220 (16%), Positives = 92/220 (41%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           ++  Y  LI+ + + + ++DA  + K+M  +G+ P+I+T  +++           AKE +
Sbjct: 550 DIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELY 609

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
            S+   G Q +   YN ++            + +   +  + ++     +  ++ +  +C
Sbjct: 610 VSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKC 669

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A  +          P + + +L+ E   + G  ++    F  M   G   D R  
Sbjct: 670 GRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRML 729

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
            S++    ++  + +A   L  +++  F    +T + L++
Sbjct: 730 NSIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTASFLLE 769


>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
          Length = 962

 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 82/324 (25%), Positives = 145/324 (44%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV+ Y+ LI   ++   LE A  +  KM + G+VP+ VT   L++     G    A + F
Sbjct: 379 NVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIF 438

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +  HG   + + YN +I      G  +  M L + M+  G   +   Y  L+  +   
Sbjct: 439 HWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTK 498

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G+V  A ++ ++M+    +P   +   LV  + + G  + A   F  M+  G  P+    
Sbjct: 499 GNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSY 558

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I  + K   +D AL+LL  +E+ G  P   +Y  +++ L +    +EAE++  K++E
Sbjct: 559 TTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMAE 618

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
            G  P      +L D   R G  + A +    +E +K       +  +I GL   G   +
Sbjct: 619 QGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADE 678

Query: 556 AQRVHGLMEAQGFAASERLKVALI 579
           A+ +   ME +G A  E    +LI
Sbjct: 679 AEILLKEMERKGLAPDEVTFTSLI 702



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 157/354 (44%), Gaps = 24/354 (6%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
            V  Y+ LI+ +  +  + +A R+L  M ENG  PD  T   LV  +SK G L+ A   F
Sbjct: 484 TVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYF 543

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + +   G  P+   Y ++I  +   G+  + +SL++ M   G   + E Y A++   ++ 
Sbjct: 544 QEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKE 603

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
                A +I + M  +   P + + T L++   + G    A   F  M +    P+    
Sbjct: 604 NRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTY 663

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
           +S+I    ++   D+A  LL E+E+ G  P   T+T L+D    L  I+ A  LL ++ +
Sbjct: 664 SSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVD 723

Query: 496 LGEAPPF-------------------KIQVSLCDMYARAGIEKKA-LQALGFLEAKKEQM 535
           +G  P +                   K+ V    +Y+ +  EK    + +  L A+  ++
Sbjct: 724 VGCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFSPHEKDVNFEIVSNLLARMSEI 783

Query: 536 GP----DDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFN 585
           G     D +  +++GL   G   +A+++   M+ +GF     +  +L+ +   N
Sbjct: 784 GCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKN 837



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 163/377 (43%), Gaps = 10/377 (2%)

Query: 218 LQPSRIDWINL-LDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L P    + +L L   R +N  L F V + ++ +E    N   YS LI+    E  +++A
Sbjct: 271 LSPDVFTYTSLILGHCRNRNLDLAFGVFDRMV-KEGCDPNSVTYSTLINGLCNEGRVDEA 329

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
             +L++M E GI P + T T+ +       + + A E    ++  G +P+ + Y ++I  
Sbjct: 330 LDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISG 389

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
               G+ ++ + L   M+  G+  +   Y AL+      G    A +I + M        
Sbjct: 390 LSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLAN 449

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
            ++   +++     GD ++A   F+ M+++G  P      ++I  Y  K  ++ A  LL 
Sbjct: 450 TQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLD 509

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
            ++++G EP   TY  LV    +   +  A     ++ E G  P      +L D +++ G
Sbjct: 510 LMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDG 569

Query: 517 IEKKALQALGFLEAKKEQMGPD----DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572
              K   AL  LE + E+MG +     +  +INGL       +A+++   M  QG   + 
Sbjct: 570 ---KVDIALSLLE-RMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNV 625

Query: 573 RLKVALISSQTFNRQRQ 589
                LI     N + Q
Sbjct: 626 ITYTTLIDGLCRNGRTQ 642



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 152/363 (41%), Gaps = 13/363 (3%)

Query: 218 LQPSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L P+ + +  L+D   ++    +   + E  + E     NV  Y+ +I+  +KEN   +A
Sbjct: 551 LNPNPVSYTTLIDGHSKDGKVDIALSLLER-MEEMGCNPNVESYNAVINGLSKENRFSEA 609

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
           E+I  KM E G++P+++T T L+    + G    A + F  +      P+   Y+S+I  
Sbjct: 610 EKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYG 669

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
               G+      L+  M   G+   E  + +L+  F   G +  A  +   M     +P 
Sbjct: 670 LCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPN 729

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
             + ++L++   +     + +    +       P ++     I +           NLL 
Sbjct: 730 YRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFSPHEKDVNFEIVS-----------NLLA 778

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
            + + G EP   TY+ LV  L R     EAEQL+  + E G  P  +I  SL   + +  
Sbjct: 779 RMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNL 838

Query: 517 IEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKV 576
               AL+    +EAK  Q+    +  +I  L   G +++AQ +   M  + + A E +  
Sbjct: 839 EVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWT 898

Query: 577 ALI 579
            L+
Sbjct: 899 VLV 901



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/345 (22%), Positives = 146/345 (42%), Gaps = 10/345 (2%)

Query: 242 KVAELV--LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLV 299
           +VA+ +  +S   F  ++   + L+   AK   +E A  + K+M  +GI P ++T   L+
Sbjct: 188 RVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLI 247

Query: 300 HMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
           ++ SK G +  A+     +  +   PD   Y S+I+ +       L   + D M+  G +
Sbjct: 248 NILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCD 307

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
            +   Y  L+      G V  A  +   M  +  +PT+ + TL + A       ++A   
Sbjct: 308 PNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIEL 367

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
              M + G +P+ +   ++I+   +   L+ A+ L  ++ K+G  P   TY  L++ L  
Sbjct: 368 VARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCV 427

Query: 480 LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP-- 537
               + A ++   +   G     +    +       G  +KA+     L  K  +MGP  
Sbjct: 428 GGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAM----VLFEKMLKMGPLP 483

Query: 538 --DDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
               +  +ING L  G + +A R+  LM+  G    E     L+S
Sbjct: 484 TVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVS 528



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 131/342 (38%), Gaps = 61/342 (17%)

Query: 218 LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L P+ I +  L+D L R   TQ  FK+    + +     N+  YS LI    +E   ++A
Sbjct: 621 LLPNVITYTTLIDGLCRNGRTQFAFKIFH-DMEKRKCLPNLYTYSSLIYGLCQEGKADEA 679

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA------------------------- 311
           E +LK+M   G+ PD VT T L+  +   G +D A                         
Sbjct: 680 EILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKG 739

Query: 312 ---------------KEAFESLRSH-------------------GFQPDKKVYNSMIMAY 337
                           EA  S   H                   G +P    Y++++   
Sbjct: 740 LQKECLLLEEKVAVQHEAVYSFSPHEKDVNFEIVSNLLARMSEIGCEPTLDTYSTLVSGL 799

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
              G+      LV  M   G     EIY +LL +  +  +V  A +I + +  + FQ  L
Sbjct: 800 CRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHL 859

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
                L+ A  +AG  ++A++ FD M+      D+     ++    K+  LD  + LL  
Sbjct: 860 SIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHI 919

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
           +E   F P   TY +L   L R+    E+E L  K+  L ++
Sbjct: 920 MESKNFTPNIQTYVILGRELSRIGKSIESEPLADKLKVLKDS 961


>gi|224065693|ref|XP_002301924.1| predicted protein [Populus trichocarpa]
 gi|222843650|gb|EEE81197.1| predicted protein [Populus trichocarpa]
          Length = 709

 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 131/278 (47%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + +   Q   R Y+ L+  + K   L DAE ++ +M  +G++P+  T ++L+  Y  A  
Sbjct: 332 MRDNGLQPRTRAYNALLRGYVKAGLLRDAEFVVSEMERSGVLPNEQTYSLLIDAYGNAER 391

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            + A+   + + +   QP+  V++ ++ +Y + G+ +    ++  M  SG+      Y  
Sbjct: 392 WESARIVLKEMEASNVQPNAYVFSRILASYRDKGEWQKTFQVLREMEDSGVRPDRIFYNV 451

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+ +F +   +  A    + M  E  +P   +   LV+ + +AG  D+A   F+ M+  G
Sbjct: 452 LIDTFGKFNCLDHAMATFDRMLSEGIEPDTITWNTLVDCHCKAGKHDRAEELFEEMMEKG 511

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
           + P +     MI ++G +   D   NLL  +   G  P   TYT L+D  G+    ++A 
Sbjct: 512 YLPCNTTFNIMINSFGDQERWDDVKNLLTNMRSQGLLPNAVTYTTLIDIYGKSGRFDDAI 571

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
           + L  +   G  P   +  +L + YA+ G+  +A+ A 
Sbjct: 572 ECLDDMKAAGLKPSSTMYNALLNAYAQRGLSDQAVSAF 609



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 144/321 (44%), Gaps = 4/321 (1%)

Query: 271 NC--LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKK 328
           NC   E+AE I ++M +NG+ P       L+  Y KAG L  A+     +   G  P+++
Sbjct: 318 NCGRTEEAEAIFEEMRDNGLQPRTRAYNALLRGYVKAGLLRDAEFVVSEMERSGVLPNEQ 377

Query: 329 VYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIM 388
            Y+ +I AY NA + +    ++  M  S ++ +  ++  +L S+   G+ +   Q+   M
Sbjct: 378 TYSLLIDAYGNAERWESARIVLKEMEASNVQPNAYVFSRILASYRDKGEWQKTFQVLREM 437

Query: 389 RIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLL 448
                +P      +L++ +G+    D A + FD M+  G +PD     +++  + K    
Sbjct: 438 EDSGVRPDRIFYNVLIDTFGKFNCLDHAMATFDRMLSEGIEPDTITWNTLVDCHCKAGKH 497

Query: 449 DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSL 508
           D+A  L  E+ + G+ P   T+ ++++  G  +  ++ + LL  +   G  P      +L
Sbjct: 498 DRAEELFEEMMEKGYLPCNTTFNIMINSFGDQERWDDVKNLLTNMRSQGLLPNAVTYTTL 557

Query: 509 CDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
            D+Y ++G    A++ L  ++A   +     +  ++N     G    A      M   G 
Sbjct: 558 IDIYGKSGRFDDAIECLDDMKAAGLKPSSTMYNALLNAYAQRGLSDQAVSAFWAMRDDGL 617

Query: 569 AASERLKVALISSQTFNRQRQ 589
             S     +LI++  F + R+
Sbjct: 618 KPSLLALNSLINA--FGKDRR 636



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/338 (21%), Positives = 150/338 (44%), Gaps = 18/338 (5%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDA--ERILKKMNENGIVPDIVTSTVLVHMYSKA 305
           + E+ + +++ +YS +I +  K N    +  ++I ++++ + +  D+     ++  ++KA
Sbjct: 225 MREDGYPSDLVNYSLIIRSLMKNNRANSSILQKIYREIDRDKLEVDVQLWNDIIVGFAKA 284

Query: 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
           G+LD+A E    ++  G         ++I    N G+ +   ++ + M  +G++     Y
Sbjct: 285 GDLDKALEFLGVVQGSGLSVKTATLVTVIWGLGNCGRTEEAEAIFEEMRDNGLQPRTRAY 344

Query: 366 LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
            ALLR + + G +R A  + + M      P  ++ +LL++AYG A   + AR     M  
Sbjct: 345 NALLRGYVKAGLLRDAEFVVSEMERSGVLPNEQTYSLLIDAYGNAERWESARIVLKEMEA 404

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
              +P+    + ++A+Y  K    K   +L E+E  G  P    Y VL+D  G+   ++ 
Sbjct: 405 SNVQPNAYVFSRILASYRDKGEWQKTFQVLREMEDSGVRPDRIFYNVLIDTFGKFNCLDH 464

Query: 486 AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL------GFLEAKK------- 532
           A     ++   G  P      +L D + +AG   +A +        G+L           
Sbjct: 465 AMATFDRMLSEGIEPDTITWNTLVDCHCKAGKHDRAEELFEEMMEKGYLPCNTTFNIMIN 524

Query: 533 ---EQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
              +Q   DD + ++  + + G L +A     L++  G
Sbjct: 525 SFGDQERWDDVKNLLTNMRSQGLLPNAVTYTTLIDIYG 562



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 69/147 (46%), Gaps = 6/147 (4%)

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
           ++I+A  + N ++KALNL+  + +DG+      Y++++  L +    N +  +L KI   
Sbjct: 204 ALISACARNNDIEKALNLICRMREDGYPSDLVNYSLIIRSLMKNNRANSS--ILQKIYRE 261

Query: 497 GEAPPFKIQVSLCD----MYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
            +    ++ V L +     +A+AG   KAL+ LG ++     +       +I GL   G 
Sbjct: 262 IDRDKLEVDVQLWNDIIVGFAKAGDLDKALEFLGVVQGSGLSVKTATLVTVIWGLGNCGR 321

Query: 553 LQDAQRVHGLMEAQGFAASERLKVALI 579
            ++A+ +   M   G     R   AL+
Sbjct: 322 TEEAEAIFEEMRDNGLQPRTRAYNALL 348


>gi|356513139|ref|XP_003525271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Glycine max]
          Length = 621

 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 79/348 (22%), Positives = 149/348 (42%), Gaps = 42/348 (12%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L+EE  +  +  Y+ L+ A  ++   +    +L K+ +NG+ PD +    +++ +S +G 
Sbjct: 86  LTEEGHKPTLITYTTLVAALTRQKRFKSIPALLSKVADNGMKPDSILLNAMINAFSDSGK 145

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDM--------------- 352
           +D A + F+ ++ +G +P    YN++I  +   G+P   M L++M               
Sbjct: 146 VDEAMKIFQKMKEYGCKPTTSTYNTLIKGFGIVGRPYESMKLLEMMGQDENVKPNDRTYN 205

Query: 353 ---------------------MITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391
                                M+ SGI+     Y  + R++AQ G+   A ++   M+  
Sbjct: 206 ILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNGETEKAERLILKMQYN 265

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAY---GKKNLL 448
           + +P   +C +++  Y + G+  +A      M  LG  P+     S+I  Y      N +
Sbjct: 266 KVKPNERTCGIIISGYCKEGNMTEALRFLYRMKELGVHPNPVVFNSLIKGYLDATDTNGV 325

Query: 449 DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSL 508
           D+AL L+ E    G +P   T++ +++      L++  E++   + + G  P       L
Sbjct: 326 DEALTLMEEF---GIKPDVVTFSTIMNAWSSAGLMDNCEEIFNDMVKAGIEPDIHAYSIL 382

Query: 509 CDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDA 556
              Y RAG  +KA   L  +     Q     F  II+G  A G +  A
Sbjct: 383 AKGYVRAGQPRKAESLLTSMSKYGVQTNVVIFTTIISGWCAAGKMDRA 430



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 146/321 (45%), Gaps = 4/321 (1%)

Query: 241 FKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
            K+ E++  +E+ + N R Y+ LI A   +  LE+A  +L KM  +GI PD+VT   +  
Sbjct: 185 MKLLEMMGQDENVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMAR 244

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
            Y++ G  ++A+     ++ +  +P+++    +I  Y   G     +  +  M   G+  
Sbjct: 245 AYAQNGETEKAERLILKMQYNKVKPNERTCGIIISGYCKEGNMTEALRFLYRMKELGVHP 304

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF--QPTLESCTLLVEAYGQAGDPDQARS 418
           +  ++ +L++ +    D  G  +   +M  EEF  +P + + + ++ A+  AG  D    
Sbjct: 305 NPVVFNSLIKGYLDATDTNGVDEALTLM--EEFGIKPDVVTFSTIMNAWSSAGLMDNCEE 362

Query: 419 NFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLG 478
            F+ M++ G +PD    + +   Y +     KA +LL  + K G +     +T ++    
Sbjct: 363 IFNDMVKAGIEPDIHAYSILAKGYVRAGQPRKAESLLTSMSKYGVQTNVVIFTTIISGWC 422

Query: 479 RLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
               ++ A  L  K+ E+G +P  K   +L   Y  A    KA + L  +E +       
Sbjct: 423 AAGKMDRAFSLCEKMHEMGTSPNLKTYETLIWGYGEAKQPWKAEEILSTMEERGVVPEMS 482

Query: 539 DFERIINGLLAGGFLQDAQRV 559
             + + +   A G  ++A R+
Sbjct: 483 TMQLVADAWRAIGLFKEANRI 503



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 131/281 (46%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
            Q +V  Y+ +  A+A+    E AER++ KM  N + P+  T  +++  Y K GN+  A 
Sbjct: 232 IQPDVVTYNTMARAYAQNGETEKAERLILKMQYNKVKPNERTCGIIISGYCKEGNMTEAL 291

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
                ++  G  P+  V+NS+I  Y++A         + +M   GI+     +  ++ ++
Sbjct: 292 RFLYRMKELGVHPNPVVFNSLIKGYLDATDTNGVDEALTLMEEFGIKPDVVTFSTIMNAW 351

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
           +  G +    +I N M     +P + + ++L + Y +AG P +A S    M + G + + 
Sbjct: 352 SSAGLMDNCEEIFNDMVKAGIEPDIHAYSILAKGYVRAGQPRKAESLLTSMSKYGVQTNV 411

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               ++I+ +     +D+A +L  ++ + G  P   TY  L+   G  +   +AE++L  
Sbjct: 412 VIFTTIISGWCAAGKMDRAFSLCEKMHEMGTSPNLKTYETLIWGYGEAKQPWKAEEILST 471

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE 533
           + E G  P       + D +   G+ K+A + L   E + E
Sbjct: 472 MEERGVVPEMSTMQLVADAWRAIGLFKEANRILNGSEEESE 512



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 124/276 (44%), Gaps = 4/276 (1%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEE--SFQTNVRDYSKLIDAHAKENCLED 275
           +QP  + + N + R   QN +   K   L+L  +    + N R    +I  + KE  + +
Sbjct: 232 IQPDVVTY-NTMARAYAQNGETE-KAERLILKMQYNKVKPNERTCGIIISGYCKEGNMTE 289

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A R L +M E G+ P+ V    L+  Y  A + +   EA   +   G +PD   +++++ 
Sbjct: 290 ALRFLYRMKELGVHPNPVVFNSLIKGYLDATDTNGVDEALTLMEEFGIKPDVVTFSTIMN 349

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
           A+ +AG       + + M+ +GIE     Y  L + + + G  R A  +   M     Q 
Sbjct: 350 AWSSAGLMDNCEEIFNDMVKAGIEPDIHAYSILAKGYVRAGQPRKAESLLTSMSKYGVQT 409

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
            +   T ++  +  AG  D+A S  + M  +G  P+ +   ++I  YG+     KA  +L
Sbjct: 410 NVVIFTTIISGWCAAGKMDRAFSLCEKMHEMGTSPNLKTYETLIWGYGEAKQPWKAEEIL 469

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
             +E+ G  P  +T  ++ D    + L  EA ++L 
Sbjct: 470 STMEERGVVPEMSTMQLVADAWRAIGLFKEANRILN 505



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 141/320 (44%), Gaps = 6/320 (1%)

Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311
           S QT V   +KL++A   +    +A+ +   + E G  P ++T T LV   ++       
Sbjct: 56  SCQT-VHARTKLMNALIGKGKPHEAQAVFHNLTEEGHKPTLITYTTLVAALTRQKRFKSI 114

Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
                 +  +G +PD  + N+MI A+ ++G+    M +   M   G + +   Y  L++ 
Sbjct: 115 PALLSKVADNGMKPDSILLNAMINAFSDSGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKG 174

Query: 372 FAQCGDVRGAGQITNIM-RIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
           F   G    + ++  +M + E  +P   +  +L++A+      ++A +    M+  G +P
Sbjct: 175 FGIVGRPYESMKLLEMMGQDENVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQP 234

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           D     +M  AY +    +KA  L+L+++ +  +P   T  +++    +   + EA + L
Sbjct: 235 DVVTYNTMARAYAQNGETEKAERLILKMQYNKVKPNERTCGIIISGYCKEGNMTEALRFL 294

Query: 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLL 548
            ++ ELG  P   +  SL   Y  A       +AL  +E  +  + PD   F  I+N   
Sbjct: 295 YRMKELGVHPNPVVFNSLIKGYLDATDTNGVDEALTLME--EFGIKPDVVTFSTIMNAWS 352

Query: 549 AGGFLQDAQRVHGLMEAQGF 568
           + G + + + +   M   G 
Sbjct: 353 SAGLMDNCEEIFNDMVKAGI 372


>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
 gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
 gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 915

 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 159/345 (46%), Gaps = 19/345 (5%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ LID   +    + A R+L  MN+ G+VPD  T T ++    K+  ++ A + F
Sbjct: 461 DVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLF 520

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           +SL   G  P+  +Y ++I  Y  AG+      +++ M++     +   + AL+      
Sbjct: 521 DSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCAD 580

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G ++ A  +   M     QPT+ + T+L+    + GD D A S F  M+  G KPD    
Sbjct: 581 GKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTY 640

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            + I  Y ++  L  A +++ ++ ++G  P   TY+ L+   G L   N A  +L ++ +
Sbjct: 641 TTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRD 700

Query: 496 LGEAPPFKIQVSLCDM-----YARAGIEKKALQALG----------FLEAKKEQ-MGPD- 538
            G  P     +SL        Y +    +  L A+            LE   E  + P+ 
Sbjct: 701 TGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNA 760

Query: 539 -DFERIINGLLAGGFLQDAQRVHGLME-AQGFAASERLKVALISS 581
             +E++I G+   G L+ A++V   M+  +G + SE +  AL+S 
Sbjct: 761 KSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSC 805



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 77/340 (22%), Positives = 149/340 (43%), Gaps = 47/340 (13%)

Query: 224 DWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKM 283
           D + +LD  R+ N    F        E  ++  +  Y+ L+++ A+   +++ +++  +M
Sbjct: 158 DALYVLDLCRKMNKDERF--------ELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEM 209

Query: 284 NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343
            E+ + P+I T   +V+ Y K GN++ A +    +   G  PD   Y S+IM Y      
Sbjct: 210 LEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDL 269

Query: 344 KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403
                + + M   G  R+E  Y  L+        +  A  +   M+ +E  PT+ + T+L
Sbjct: 270 DSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVL 329

Query: 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGF 463
           +++                                +    +K+   +ALNL+ E+E+ G 
Sbjct: 330 IKS--------------------------------LCGSERKS---EALNLVKEMEETGI 354

Query: 464 EPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
           +P   TYTVL+D L       +A +LLG++ E G  P      +L + Y + G+ + A+ 
Sbjct: 355 KPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVD 414

Query: 524 ALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLM 563
            +  +E++K  + P+   R  N L+ G    +  +  G++
Sbjct: 415 VVELMESRK--LSPN--TRTYNELIKGYCKSNVHKAMGVL 450



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/274 (21%), Positives = 106/274 (38%), Gaps = 54/274 (19%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN-------- 307
           +   Y+  I  + +E  L DAE ++ KM ENG+ PD+ T + L+  Y   G         
Sbjct: 636 DAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVL 695

Query: 308 ---------------------------------------------LDRAKEAFESLRSHG 322
                                                         D   E  E +  H 
Sbjct: 696 KRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHS 755

Query: 323 FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS-GIERSEEIYLALLRSFAQCGDVRGA 381
             P+ K Y  +I+     G  ++   + D M  + GI  SE ++ ALL    +      A
Sbjct: 756 VTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEA 815

Query: 382 GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441
            ++ + M      P LESC +L+    + G+ ++  S F  +++ G+  D+     +I  
Sbjct: 816 AKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDELAWKIIIDG 875

Query: 442 YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
            GK+ L++    L   +EK+G +    TY++L++
Sbjct: 876 VGKQGLVEAFYELFNVMEKNGCKFSSQTYSLLIE 909



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 69/344 (20%), Positives = 137/344 (39%), Gaps = 38/344 (11%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E+    N+  Y+K+++ + K   +E+A + + K+ E G+ PD  T T L+  Y +  +LD
Sbjct: 211 EDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLD 270

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A + F  +   G + ++  Y  +I     A +    M L   M       +   Y  L+
Sbjct: 271 SAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLI 330

Query: 370 RSFAQCGDVRGAGQITNIMRIEE--FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           +S   CG  R +  +  +  +EE   +P + + T+L+++       ++AR     M+  G
Sbjct: 331 KSL--CGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKG 388

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGP-------------------- 467
             P+     ++I  Y K+ +++ A++++  +E     P                      
Sbjct: 389 LMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMG 448

Query: 468 --------------ATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
                          TY  L+D   R    + A +LL  +++ G  P      S+ D   
Sbjct: 449 VLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLC 508

Query: 514 RAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQ 557
           ++   ++A      LE K        +  +I+G    G + +A 
Sbjct: 509 KSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAH 552


>gi|356538593|ref|XP_003537787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Glycine max]
          Length = 583

 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 153/319 (47%), Gaps = 3/319 (0%)

Query: 253 FQTNVRDYSKLIDAHAKENC---LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           F  N+  Y+ LID H K+     +  A+ ILK+M  N I P+ +T   L+  + K  N+ 
Sbjct: 231 FSPNIVTYNTLIDGHCKKGSAGKMYRADAILKEMLANKICPNEITFNTLIDGFCKDENVL 290

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            AK AFE ++  G +P+   YNS+I    N G+    ++L D M+  G++ +   + AL+
Sbjct: 291 AAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNALI 350

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
             F +   ++ A ++ + +  ++  P   +   +++A+ +AG  ++  +  + M+  G  
Sbjct: 351 NGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIF 410

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           P+      +IA   +   +  A  LL E+E    +    TY +L+    +    ++AE+L
Sbjct: 411 PNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYELKADVVTYNILIGGWCKDGEPSKAEKL 470

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLA 549
           LG++  +G  P      +L D Y   G  K AL+    +E + ++     +  +I G   
Sbjct: 471 LGEMLNVGVKPNHVTYNTLMDGYCMEGNLKAALKVRTQMEKEGKRANVVTYNVLIKGFCK 530

Query: 550 GGFLQDAQRVHGLMEAQGF 568
            G L+DA R+   M  +G 
Sbjct: 531 TGKLEDANRLLNEMLEKGL 549



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 134/281 (47%)

Query: 220 PSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERI 279
           P+ I +  L+D   +    L  K A   +  +  + N+  Y+ LI+  +    L++A  +
Sbjct: 271 PNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGKLDEAIAL 330

Query: 280 LKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339
             KM   G+ P+IVT   L++ + K   +  A++ F+ +      P+   +N+MI A+  
Sbjct: 331 WDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCK 390

Query: 340 AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLES 399
           AG  + G +L + M+  GI  +   Y  L+    +  +VR A ++ N M   E +  + +
Sbjct: 391 AGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYELKADVVT 450

Query: 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELE 459
             +L+  + + G+P +A      M+ +G KP+     +++  Y  +  L  AL +  ++E
Sbjct: 451 YNILIGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYCMEGNLKAALKVRTQME 510

Query: 460 KDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
           K+G      TY VL+    +   + +A +LL ++ E G  P
Sbjct: 511 KEGKRANVVTYNVLIKGFCKTGKLEDANRLLNEMLEKGLNP 551



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/256 (21%), Positives = 123/256 (48%), Gaps = 3/256 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + +  F+ ++   + L+ A  K N   + + + K+M +  I P++ T  + ++   KAG 
Sbjct: 156 VQDYGFKLSLNSCNPLLSALVKGNETGEMQYVYKEMIKRRIQPNLTTFNIFINGLCKAGK 215

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYV---NAGQPKLGMSLVDMMITSGIERSEEI 364
           L++A++  E +++ GF P+   YN++I  +    +AG+     +++  M+ + I  +E  
Sbjct: 216 LNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKKGSAGKMYRADAILKEMLANKICPNEIT 275

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
           +  L+  F +  +V  A      M+ +  +P + +   L+      G  D+A + +D M+
Sbjct: 276 FNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGKLDEAIALWDKMV 335

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
            LG KP+     ++I  + KK ++ +A  L  ++ +    P   T+  ++D   +  ++ 
Sbjct: 336 GLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMME 395

Query: 485 EAEQLLGKISELGEAP 500
           E   L   + + G  P
Sbjct: 396 EGFALHNSMLDEGIFP 411



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/184 (20%), Positives = 84/184 (45%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           ++E+    N   ++ +IDA  K   +E+   +   M + GI P++ T   L+    +  N
Sbjct: 369 IAEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQN 428

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  AK+    + ++  + D   YN +I  +   G+P     L+  M+  G++ +   Y  
Sbjct: 429 VRAAKKLLNEMENYELKADVVTYNILIGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNT 488

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+  +   G+++ A ++   M  E  +  + +  +L++ + + G  + A    + M+  G
Sbjct: 489 LMDGYCMEGNLKAALKVRTQMEKEGKRANVVTYNVLIKGFCKTGKLEDANRLLNEMLEKG 548

Query: 428 HKPD 431
             P+
Sbjct: 549 LNPN 552



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/307 (18%), Positives = 126/307 (41%), Gaps = 7/307 (2%)

Query: 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV 350
           + + + +LV  Y     +  A E F  ++ +GF+      N ++ A V   +      + 
Sbjct: 129 NALITDMLVLAYVTNLEIHSACEVFRRVQDYGFKLSLNSCNPLLSALVKGNETGEMQYVY 188

Query: 351 DMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAY--- 407
             MI   I+ +   +   +    + G +  A  +   ++   F P + +   L++ +   
Sbjct: 189 KEMIKRRIQPNLTTFNIFINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKK 248

Query: 408 GQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGP 467
           G AG   +A +    M+     P++    ++I  + K   +  A N   E+++ G +P  
Sbjct: 249 GSAGKMYRADAILKEMLANKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNI 308

Query: 468 ATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGF 527
            TY  L++ L     ++EA  L  K+  LG  P      +L + + +  + K+A +   F
Sbjct: 309 VTYNSLINGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKL--F 366

Query: 528 LEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFN 585
            +  ++ + P+   F  +I+     G +++   +H  M  +G   +      LI+    N
Sbjct: 367 DDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCRN 426

Query: 586 RQRQPTR 592
           +  +  +
Sbjct: 427 QNVRAAK 433



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 51/113 (45%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
            + +V  Y+ LI    K+     AE++L +M   G+ P+ VT   L+  Y   GNL  A 
Sbjct: 444 LKADVVTYNILIGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYCMEGNLKAAL 503

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
           +    +   G + +   YN +I  +   G+ +    L++ M+  G+  +   Y
Sbjct: 504 KVRTQMEKEGKRANVVTYNVLIKGFCKTGKLEDANRLLNEMLEKGLNPNRTTY 556



 Score = 40.4 bits (93), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 37/76 (48%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N   Y+ L+D +  E  L+ A ++  +M + G   ++VT  VL+  + K G L+ A    
Sbjct: 482 NHVTYNTLMDGYCMEGNLKAALKVRTQMEKEGKRANVVTYNVLIKGFCKTGKLEDANRLL 541

Query: 316 ESLRSHGFQPDKKVYN 331
             +   G  P++  Y+
Sbjct: 542 NEMLEKGLNPNRTTYD 557


>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05670, mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 85/358 (23%), Positives = 153/358 (42%), Gaps = 35/358 (9%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           V  E     N   Y+ +I +  +   +++A R+L +M+     PD+V+ + ++  Y   G
Sbjct: 248 VFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLG 307

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            L +A +  + ++  G +P++  YNS+I+     G+      ++  M++  I     +Y 
Sbjct: 308 ELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYT 367

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+  F + G VR A +  + M  ++  P   + T L++ +GQ G   + ++ F  MI  
Sbjct: 368 TLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISR 427

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR------- 479
           G KPD+    ++I  Y K   +  A +L  E+ + G  P   TY  L+D L +       
Sbjct: 428 GLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTA 487

Query: 480 -----------LQL-----------------INEAEQLLGKISELGEAPPFKIQVSLCDM 511
                      LQL                 I +A +L+ ++   G  P      ++ D 
Sbjct: 488 NELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDA 547

Query: 512 YARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
           Y R G   KA + L  +  +  Q     F  ++NG    G L+D  R+ G M  +G  
Sbjct: 548 YCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIV 605



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 121/260 (46%), Gaps = 3/260 (1%)

Query: 244 AELVLSEESFQTNVRD---YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
           AE VL E   Q  + D   Y+ LI    K   +  A +   +M    I PD +T T L+ 
Sbjct: 347 AEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQ 406

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
            + + G +   +  F  + S G +PD+  Y ++I  Y  AG+     SL + M+  G+  
Sbjct: 407 GFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTP 466

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
           +   Y AL+    + G++  A ++ + MR +  Q  +     +V    +AG+ +QA    
Sbjct: 467 NIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLM 526

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
             M   G  PD     ++I AY +   +DKA  LL E+   G +P   T+ VL++    L
Sbjct: 527 KEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCML 586

Query: 481 QLINEAEQLLGKISELGEAP 500
            ++ + ++LLG + E G  P
Sbjct: 587 GMLEDGDRLLGWMLEKGIVP 606



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 110/241 (45%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LID + K   + +A  +  +M + G+ P+IVT   L+    K G LD A E  + +R
Sbjct: 436 YTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMR 495

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G Q +  +YNSM+     AG  +  + L+  M  +GI+     Y  ++ ++ + GD+ 
Sbjct: 496 KKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDID 555

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++   M     QPT+ +  +L+  +   G  +       +M+  G  PD     +++
Sbjct: 556 KAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLM 615

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             +  +N ++    +   +   G  P   TY +L+    + + + EA  L  ++ E G  
Sbjct: 616 KQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYV 675

Query: 500 P 500
           P
Sbjct: 676 P 676



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 101/228 (44%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + ++  Q NV  Y+ +++   K   +E A +++K+M   GI PD +T T ++  Y + G+
Sbjct: 494 MRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGD 553

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D+A +  + +   G QP    +N ++  +   G  + G  L+  M+  GI      Y  
Sbjct: 554 IDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNT 613

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L++       +    +I   MR +   P   +  +L++ + +A +  +A   +  MI  G
Sbjct: 614 LMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKG 673

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
           + P      ++I  + KK    +A  L  E+   G       Y   VD
Sbjct: 674 YVPTVTSYNALIKRFYKKRKFXEARELFEEMRGHGLVADGEIYNFFVD 721



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/307 (21%), Positives = 122/307 (39%), Gaps = 16/307 (5%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELV----LSEESFQT----NVRDYSKLIDAHAK 269
           L+P  + +  L+D        +Y K  E+V    L  E  Q     N+  Y  LID   K
Sbjct: 429 LKPDEVTYTTLID--------VYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCK 480

Query: 270 ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKV 329
              L+ A  +L +M + G+  ++     +V+   KAGN+++A +  + +   G  PD   
Sbjct: 481 HGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAIT 540

Query: 330 YNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389
           Y ++I AY   G       L+  M+  G++ +   +  L+  F   G +    ++   M 
Sbjct: 541 YTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWML 600

Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD 449
            +   P   +   L++ +      +     +  M   G  PD      +I  + K   L 
Sbjct: 601 EKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLK 660

Query: 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLC 509
           +A  L  E+ + G+ P   +Y  L+    + +   EA +L  ++   G     +I     
Sbjct: 661 EAWFLYKEMIEKGYVPTVTSYNALIKRFYKKRKFXEARELFEEMRGHGLVADGEIYNFFV 720

Query: 510 DMYARAG 516
           DM    G
Sbjct: 721 DMCYEEG 727



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 46/92 (50%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI  H K   L++A  + K+M E G VP + +   L+  + K      A+E FE +R
Sbjct: 646 YNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKRKFXEARELFEEMR 705

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVD 351
            HG   D ++YN  +      G  ++ ++L D
Sbjct: 706 GHGLVADGEIYNFFVDMCYEEGDVEITLNLCD 737



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 52/119 (43%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+  H   N +    +I K+M   G+ PD  T  +L+  + KA NL  A   ++ + 
Sbjct: 611 YNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMI 670

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
             G+ P    YN++I  +    +      L + M   G+    EIY   +    + GDV
Sbjct: 671 EKGYVPTVTSYNALIKRFYKKRKFXEARELFEEMRGHGLVADGEIYNFFVDMCYEEGDV 729


>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 85/358 (23%), Positives = 153/358 (42%), Gaps = 35/358 (9%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           V  E     N   Y+ +I +  +   +++A R+L +M+     PD+V+ + ++  Y   G
Sbjct: 248 VFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLG 307

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            L +A +  + ++  G +P++  YNS+I+     G+      ++  M++  I     +Y 
Sbjct: 308 ELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYT 367

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+  F + G VR A +  + M  ++  P   + T L++ +GQ G   + ++ F  MI  
Sbjct: 368 TLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISR 427

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR------- 479
           G KPD+    ++I  Y K   +  A +L  E+ + G  P   TY  L+D L +       
Sbjct: 428 GLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTA 487

Query: 480 -----------LQL-----------------INEAEQLLGKISELGEAPPFKIQVSLCDM 511
                      LQL                 I +A +L+ ++   G  P      ++ D 
Sbjct: 488 NELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDA 547

Query: 512 YARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
           Y R G   KA + L  +  +  Q     F  ++NG    G L+D  R+ G M  +G  
Sbjct: 548 YCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIV 605



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 121/260 (46%), Gaps = 3/260 (1%)

Query: 244 AELVLSEESFQTNVRD---YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
           AE VL E   Q  + D   Y+ LI    K   +  A +   +M    I PD +T T L+ 
Sbjct: 347 AEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQ 406

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
            + + G +   +  F  + S G +PD+  Y ++I  Y  AG+     SL + M+  G+  
Sbjct: 407 GFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTP 466

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
           +   Y AL+    + G++  A ++ + MR +  Q  +     +V    +AG+ +QA    
Sbjct: 467 NIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLM 526

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
             M   G  PD     ++I AY +   +DKA  LL E+   G +P   T+ VL++    L
Sbjct: 527 KEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCML 586

Query: 481 QLINEAEQLLGKISELGEAP 500
            ++ + ++LLG + E G  P
Sbjct: 587 GMLEDGDRLLGWMLEKGIVP 606



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 110/241 (45%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LID + K   + +A  +  +M + G+ P+IVT   L+    K G LD A E  + +R
Sbjct: 436 YTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMR 495

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G Q +  +YNSM+     AG  +  + L+  M  +GI+     Y  ++ ++ + GD+ 
Sbjct: 496 KKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDID 555

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++   M     QPT+ +  +L+  +   G  +       +M+  G  PD     +++
Sbjct: 556 KAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLM 615

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             +  +N ++    +   +   G  P   TY +L+    + + + EA  L  ++ E G  
Sbjct: 616 KQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYV 675

Query: 500 P 500
           P
Sbjct: 676 P 676



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 102/228 (44%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + ++  Q NV  Y+ +++   K   +E A +++K+M   GI PD +T T ++  Y + G+
Sbjct: 494 MRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGD 553

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D+A +  + +   G QP    +N ++  +   G  + G  L+  M+  GI      Y  
Sbjct: 554 IDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNT 613

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L++       +    +I   MR +   P   +  +L++ + +A +  +A   +  MI  G
Sbjct: 614 LMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKG 673

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
           + P      ++I  + KK  + +A  L  E+   G       Y   VD
Sbjct: 674 YVPTVTSYNALIKRFYKKKKILEARELFEEMRGHGLVADGEIYNFFVD 721



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/307 (22%), Positives = 123/307 (40%), Gaps = 16/307 (5%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELV----LSEESFQT----NVRDYSKLIDAHAK 269
           L+P  + +  L+D        +Y K  E+V    L  E  Q     N+  Y  LID   K
Sbjct: 429 LKPDEVTYTTLID--------VYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCK 480

Query: 270 ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKV 329
              L+ A  +L +M + G+  ++     +V+   KAGN+++A +  + +   G  PD   
Sbjct: 481 HGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAIT 540

Query: 330 YNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389
           Y ++I AY   G       L+  M+  G++ +   +  L+  F   G +    ++   M 
Sbjct: 541 YTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWML 600

Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD 449
            +   P   +   L++ +      +     +  M   G  PD      +I  + K   L 
Sbjct: 601 EKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLK 660

Query: 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLC 509
           +A  L  E+ + G+ P   +Y  L+    + + I EA +L  ++   G     +I     
Sbjct: 661 EAWFLYKEMIEKGYVPTVTSYNALIKRFYKKKKILEARELFEEMRGHGLVADGEIYNFFV 720

Query: 510 DMYARAG 516
           DM    G
Sbjct: 721 DMCYEEG 727



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 47/92 (51%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI  H K   L++A  + K+M E G VP + +   L+  + K   +  A+E FE +R
Sbjct: 646 YNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKKKILEARELFEEMR 705

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVD 351
            HG   D ++YN  +      G  ++ ++L D
Sbjct: 706 GHGLVADGEIYNFFVDMCYEEGDVEITLNLCD 737



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 52/119 (43%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+  H   N +    +I K+M   G+ PD  T  +L+  + KA NL  A   ++ + 
Sbjct: 611 YNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMI 670

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
             G+ P    YN++I  +    +      L + M   G+    EIY   +    + GDV
Sbjct: 671 EKGYVPTVTSYNALIKRFYKKKKILEARELFEEMRGHGLVADGEIYNFFVDMCYEEGDV 729


>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
 gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
          Length = 814

 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 137/303 (45%), Gaps = 5/303 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI  ++     ++A R+ K+M    I+PD+VT  +L+    K G +  A++ F+++ 
Sbjct: 292 YNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMA 351

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  PD   YN M+  Y   G       L D+M+  GI      +  L++++A CG + 
Sbjct: 352 MKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLD 411

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  I N MR    +P + + T ++ A  + G  D A   F+ MI  G  PD      +I
Sbjct: 412 KAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLI 471

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             +     L KA  L+ E+  +G       ++ +++ L +L  + +A+ +      +G  
Sbjct: 472 QGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLH 531

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P   +   L D Y   G  +KAL+   F       + P+D   ++ G L  G+ +  +  
Sbjct: 532 PTAVVYSMLMDGYCLVGKMEKALRV--FDAMVSAGIEPND---VVYGTLVNGYCKIGRID 586

Query: 560 HGL 562
            GL
Sbjct: 587 EGL 589



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 107/218 (49%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++ LI A+A    L+ A  I  +M ++G+ P+++T T ++    + G +D A E F  + 
Sbjct: 397 FNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMI 456

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  PDK  Y+ +I  +   G       L+  ++ +G+     ++ +++ +  + G V 
Sbjct: 457 DQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGRVM 516

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  I ++       PT    ++L++ Y   G  ++A   FD M+  G +P+D    +++
Sbjct: 517 DAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLV 576

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
             Y K   +D+ L+L  E+ + G +P    Y +++D L
Sbjct: 577 NGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGL 614



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 79/350 (22%), Positives = 143/350 (40%), Gaps = 37/350 (10%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIV--PDIVTSTVLVHMYSKAGNLDRAKE 313
           +V  YS L+ +   +     A+ +L+ M E G V  PD+V    ++  + K G++++A +
Sbjct: 181 DVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYNTVIDGFFKEGDVNKACD 240

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            F+ +   G  PD   Y+S++ A   A       + +  M+  G+  +   Y  L+  ++
Sbjct: 241 LFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYS 300

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
             G  + A ++   MR +   P + +  +L+ +  + G   +AR  FD M   G  PD  
Sbjct: 301 STGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVF 360

Query: 434 ----------------------------------CTAS-MIAAYGKKNLLDKALNLLLEL 458
                                             CT + +I AY    +LDKA+ +  E+
Sbjct: 361 SYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEM 420

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
              G +P   TYT ++  L R+  +++A +   ++ + G AP       L   +   G  
Sbjct: 421 RDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSL 480

Query: 519 KKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
            KA + +  +      +    F  IIN L   G + DAQ +  L    G 
Sbjct: 481 LKAKELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGL 530



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 108/242 (44%), Gaps = 2/242 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  LI        L  A+ ++ ++  NG+  DIV  + +++   K G +  A+  F+   
Sbjct: 467 YHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTV 526

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G  P   VY+ ++  Y   G+ +  + + D M+++GIE ++ +Y  L+  + + G + 
Sbjct: 527 NVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRID 586

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
               +   M  +  +P+     ++++   +AG    A+  F  M   G    ++CT S++
Sbjct: 587 EGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAM-NKCTYSIV 645

Query: 440 A-AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
                K    D+A+ L  EL     +    T   ++  + + + + EA+ L   IS  G 
Sbjct: 646 LRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGL 705

Query: 499 AP 500
            P
Sbjct: 706 VP 707



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 106/278 (38%), Gaps = 36/278 (12%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS L+D +     +E A R+   M   GI P+ V    LV+ Y K G +D     F  + 
Sbjct: 537 YSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREML 596

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF--AQCGD 377
             G +P   +YN +I     AG+          M  SGI  ++  Y  +LR     +C D
Sbjct: 597 QKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFD 656

Query: 378 --------VRGAGQITNIM-------------RIEE------------FQPTLESCTLLV 404
                   +R      +I+             R+EE              P + + ++++
Sbjct: 657 EAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMI 716

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
               + G  ++A   F  M   G +PD R    ++    KKN + +A   L ++++  F 
Sbjct: 717 TNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFS 776

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLL-GKISELGEAPP 501
               T  +LVD         E  + L  K   L EA P
Sbjct: 777 LEHLTTMLLVDLFSSKGTCREHIRFLPAKYHFLAEASP 814



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 91/207 (43%), Gaps = 8/207 (3%)

Query: 211 LAEWKELLQ----PSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDA 266
           L+ ++E+LQ    PS I +  ++D L E    +  KV    ++E     N   YS ++  
Sbjct: 589 LSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRG 648

Query: 267 HAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPD 326
             K  C ++A  + K++    +  DI+T   ++    +   ++ AK+ F S+   G  P 
Sbjct: 649 LFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPC 708

Query: 327 KKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITN 386
              Y+ MI   +  G  +    +   M  +G E    +   ++R   +  ++  AG   +
Sbjct: 709 VVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLS 768

Query: 387 IMRIEEFQPTLESCT--LLVEAYGQAG 411
             +I+E   +LE  T  LLV+ +   G
Sbjct: 769 --KIDERNFSLEHLTTMLLVDLFSSKG 793


>gi|115489040|ref|NP_001067007.1| Os12g0557800 [Oryza sativa Japonica Group]
 gi|113649514|dbj|BAF30026.1| Os12g0557800 [Oryza sativa Japonica Group]
          Length = 682

 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 114/239 (47%), Gaps = 1/239 (0%)

Query: 255 TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA 314
           ++V  Y+ +ID   K   ++ AE I+K+M + G +P++VT   L+  YSK GN+  AK  
Sbjct: 417 SSVMSYNMVIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVV 476

Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
            + L  HGF PD   + S+I    N  Q        + M   G+  + + Y  L+ +   
Sbjct: 477 LKMLMEHGFMPDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCS 536

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
            G V  A  + N M+I+   P   S   L+ ++ +    D+A   F+ M+R G  PD   
Sbjct: 537 AGHVNKAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDMVRFGVVPDSYT 596

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFE-PGPATYTVLVDWLGRLQLINEAEQLLGK 492
             S+I A   +  ++KA  +L   E+ G       +Y  +V  L ++   +EA +L+ K
Sbjct: 597 YNSLIKALCDERRVNKAKEILFARERSGCSTSNNQSYWPIVAALAKMGQFSEAGELMDK 655



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 79/368 (21%), Positives = 145/368 (39%), Gaps = 55/368 (14%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH---------- 300
           E  + NV  Y+ L+D       +E+A R+L KM E G+ P   T   LVH          
Sbjct: 238 EGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKMKEKGVAPSEATYRTLVHGVFRCLERDK 297

Query: 301 --------------MYSKAGNL--------DRAKEAFE---SLRSHGFQPDKKVYNSMIM 335
                         ++  A +         D AKEA E    + + G+  D   +  ++ 
Sbjct: 298 AYRMLSDWLGHETSLHPSACHTMLYCLSKKDMAKEAVEFEKRMSARGYLLDSTAFGIVMS 357

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
             +   +      L+D  I +G     ++Y+ +++S   C +   A      M ++    
Sbjct: 358 CALKCLEVSDLCELLDSFIKNGGNPGFDVYIMVIKSLLNCKNFSKANHYLGHMVLKGLLS 417

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
           ++ S  ++++ + +AG  D+A      M   G  P+     ++I+ Y K   +  A  +L
Sbjct: 418 SVMSYNMVIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVL 477

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
             L + GF P   T+T L+D L     +++A     +++E G  P  +    L      A
Sbjct: 478 KMLMEHGFMPDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSA 537

Query: 516 GIEKKALQALGFLEAKKEQMGPDDF------------------ERIINGLLAGGFLQDAQ 557
           G   KA+  L   + K + + PD +                  E I N ++  G + D+ 
Sbjct: 538 GHVNKAIDLLN--KMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDMVRFGVVPDSY 595

Query: 558 RVHGLMEA 565
             + L++A
Sbjct: 596 TYNSLIKA 603



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 103/246 (41%), Gaps = 14/246 (5%)

Query: 323 FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAG 382
           F  D  V  +++ A    G   L   LV  +   G E SEE+  AL+ S+ + G  R A 
Sbjct: 114 FARDGGVRRALVGALWRRGPVVLSGRLVAEVRGCGCEVSEELVCALVESWGRLGLARYAH 173

Query: 383 QITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAY 442
           ++   M     +P+    T +  AY +          F  M   G +PD     S++   
Sbjct: 174 EVFVQMPRLGLRPS----TAVYTAYLR----------FQQMPADGCRPDHFTYNSLVHGV 219

Query: 443 GKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPF 502
            ++ ++D+A+ L+ ++E +G  P   TYT+LVD       + EA ++L K+ E G AP  
Sbjct: 220 CRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKMKEKGVAPSE 279

Query: 503 KIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGL 562
               +L     R     KA + L      +  + P     ++  L      ++A      
Sbjct: 280 ATYRTLVHGVFRCLERDKAYRMLSDWLGHETSLHPSACHTMLYCLSKKDMAKEAVEFEKR 339

Query: 563 MEAQGF 568
           M A+G+
Sbjct: 340 MSARGY 345



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 65/132 (49%)

Query: 242 KVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM 301
           KV   +L E  F  ++  ++ LID     + L+DA    ++M E G+ P+  T  VL+H 
Sbjct: 474 KVVLKMLMEHGFMPDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHT 533

Query: 302 YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS 361
              AG++++A +    ++  G  PD   +N++I+++    +      + + M+  G+   
Sbjct: 534 LCSAGHVNKAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDMVRFGVVPD 593

Query: 362 EEIYLALLRSFA 373
              Y +L+++  
Sbjct: 594 SYTYNSLIKALC 605



 Score = 47.0 bits (110), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 55/291 (18%), Positives = 107/291 (36%), Gaps = 39/291 (13%)

Query: 280 LKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339
            ++M  +G  PD  T   LVH   + G +D A      +   G +P+   Y  ++  + N
Sbjct: 197 FQQMPADGCRPDHFTYNSLVHGVCRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCN 256

Query: 340 AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLES 399
           AG+ +    ++D M   G+  SE  Y  L+    +C                     LE 
Sbjct: 257 AGRVEEAFRMLDKMKEKGVAPSEATYRTLVHGVFRC---------------------LER 295

Query: 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA--SMIAAYGKKNLLDKALNLLLE 457
                +AY    D             LGH+     +A  +M+    KK++  +A+     
Sbjct: 296 ----DKAYRMLSD------------WLGHETSLHPSACHTMLYCLSKKDMAKEAVEFEKR 339

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI 517
           +   G+      + +++    +   +++  +LL    + G  P F + + +         
Sbjct: 340 MSARGYLLDSTAFGIVMSCALKCLEVSDLCELLDSFIKNGGNPGFDVYIMVIKSLLNCKN 399

Query: 518 EKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
             KA   LG +  K        +  +I+  +  G +  A+ +   M+ +GF
Sbjct: 400 FSKANHYLGHMVLKGLLSSVMSYNMVIDCFVKAGAVDKAEEIVKEMQDKGF 450


>gi|77556780|gb|ABA99576.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 696

 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 114/239 (47%), Gaps = 1/239 (0%)

Query: 255 TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA 314
           ++V  Y+ +ID   K   ++ AE I+K+M + G +P++VT   L+  YSK GN+  AK  
Sbjct: 431 SSVMSYNMVIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVV 490

Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
            + L  HGF PD   + S+I    N  Q        + M   G+  + + Y  L+ +   
Sbjct: 491 LKMLMEHGFMPDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCS 550

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
            G V  A  + N M+I+   P   S   L+ ++ +    D+A   F+ M+R G  PD   
Sbjct: 551 AGHVNKAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDMVRFGVVPDSYT 610

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFE-PGPATYTVLVDWLGRLQLINEAEQLLGK 492
             S+I A   +  ++KA  +L   E+ G       +Y  +V  L ++   +EA +L+ K
Sbjct: 611 YNSLIKALCDERRVNKAKEILFARERSGCSTSNNQSYWPIVAALAKMGQFSEAGELMDK 669



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 79/368 (21%), Positives = 145/368 (39%), Gaps = 55/368 (14%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH---------- 300
           E  + NV  Y+ L+D       +E+A R+L KM E G+ P   T   LVH          
Sbjct: 252 EGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKMKEKGVAPSEATYRTLVHGVFRCLERDK 311

Query: 301 --------------MYSKAGNL--------DRAKEAFE---SLRSHGFQPDKKVYNSMIM 335
                         ++  A +         D AKEA E    + + G+  D   +  ++ 
Sbjct: 312 AYRMLSDWLGHETSLHPSACHTMLYCLSKKDMAKEAVEFEKRMSARGYLLDSTAFGIVMS 371

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
             +   +      L+D  I +G     ++Y+ +++S   C +   A      M ++    
Sbjct: 372 CALKCLEVSDLCELLDSFIKNGGNPGFDVYIMVIKSLLNCKNFSKANHYLGHMVLKGLLS 431

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
           ++ S  ++++ + +AG  D+A      M   G  P+     ++I+ Y K   +  A  +L
Sbjct: 432 SVMSYNMVIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVL 491

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
             L + GF P   T+T L+D L     +++A     +++E G  P  +    L      A
Sbjct: 492 KMLMEHGFMPDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSA 551

Query: 516 GIEKKALQALGFLEAKKEQMGPDDF------------------ERIINGLLAGGFLQDAQ 557
           G   KA+  L   + K + + PD +                  E I N ++  G + D+ 
Sbjct: 552 GHVNKAIDLLN--KMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDMVRFGVVPDSY 609

Query: 558 RVHGLMEA 565
             + L++A
Sbjct: 610 TYNSLIKA 617



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 106/246 (43%)

Query: 323 FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAG 382
           F  D  V  +++ A    G   L   LV  +   G E SEE+  AL+ S+ + G  R A 
Sbjct: 114 FARDGGVRRALVGALWRRGPVVLSGRLVAEVRGCGCEVSEELVCALVESWGRLGLARYAH 173

Query: 383 QITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAY 442
           ++   M     +P+      L+ A  +AG  D A   F  M   G +PD     S++   
Sbjct: 174 EVFVQMPRLGLRPSTAVYNALIAASVRAGAVDTAYLRFQQMPADGCRPDHFTYNSLVHGV 233

Query: 443 GKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPF 502
            ++ ++D+A+ L+ ++E +G  P   TYT+LVD       + EA ++L K+ E G AP  
Sbjct: 234 CRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKMKEKGVAPSE 293

Query: 503 KIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGL 562
               +L     R     KA + L      +  + P     ++  L      ++A      
Sbjct: 294 ATYRTLVHGVFRCLERDKAYRMLSDWLGHETSLHPSACHTMLYCLSKKDMAKEAVEFEKR 353

Query: 563 MEAQGF 568
           M A+G+
Sbjct: 354 MSARGY 359



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 65/132 (49%)

Query: 242 KVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM 301
           KV   +L E  F  ++  ++ LID     + L+DA    ++M E G+ P+  T  VL+H 
Sbjct: 488 KVVLKMLMEHGFMPDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHT 547

Query: 302 YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS 361
              AG++++A +    ++  G  PD   +N++I+++    +      + + M+  G+   
Sbjct: 548 LCSAGHVNKAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDMVRFGVVPD 607

Query: 362 EEIYLALLRSFA 373
              Y +L+++  
Sbjct: 608 SYTYNSLIKALC 619



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 61/296 (20%), Positives = 120/296 (40%), Gaps = 6/296 (2%)

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A  +  +M   G+ P       L+    +AG +D A   F+ + + G +PD   YNS++ 
Sbjct: 172 AHEVFVQMPRLGLRPSTAVYNALIAASVRAGAVDTAYLRFQQMPADGCRPDHFTYNSLVH 231

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
                G     + LV  M   GI  +   Y  L+  F   G V  A ++ + M+ +   P
Sbjct: 232 GVCRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKMKEKGVAP 291

Query: 396 TLESCTLLVEAYGQAGDPDQA-RSNFDYMIRLGHKPDDRCTA--SMIAAYGKKNLLDKAL 452
           +  +   LV    +  + D+A R   D+   LGH+     +A  +M+    KK++  +A+
Sbjct: 292 SEATYRTLVHGVFRCLERDKAYRMLSDW---LGHETSLHPSACHTMLYCLSKKDMAKEAV 348

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
                +   G+      + +++    +   +++  +LL    + G  P F + + +    
Sbjct: 349 EFEKRMSARGYLLDSTAFGIVMSCALKCLEVSDLCELLDSFIKNGGNPGFDVYIMVIKSL 408

Query: 513 ARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
                  KA   LG +  K        +  +I+  +  G +  A+ +   M+ +GF
Sbjct: 409 LNCKNFSKANHYLGHMVLKGLLSSVMSYNMVIDCFVKAGAVDKAEEIVKEMQDKGF 464



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 71/184 (38%), Gaps = 18/184 (9%)

Query: 296 TVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMIT 355
             LV  + + G    A E F  +   G +P   VYN++I A V AG           M  
Sbjct: 157 CALVESWGRLGLARYAHEVFVQMPRLGLRPSTAVYNALIAASVRAGAVDTAYLRFQQMPA 216

Query: 356 SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ 415
            G       Y +L+    + G V  A ++   M  E  +P + + T+LV+ +  AG  ++
Sbjct: 217 DGCRPDHFTYNSLVHGVCRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEE 276

Query: 416 ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
           A    D M   G  P +    +++              +   LE+D        Y +L D
Sbjct: 277 AFRMLDKMKEKGVAPSEATYRTLVHG------------VFRCLERD------KAYRMLSD 318

Query: 476 WLGR 479
           WLG 
Sbjct: 319 WLGH 322


>gi|242094172|ref|XP_002437576.1| hypothetical protein SORBIDRAFT_10g029640 [Sorghum bicolor]
 gi|241915799|gb|EER88943.1| hypothetical protein SORBIDRAFT_10g029640 [Sorghum bicolor]
          Length = 429

 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 126/286 (44%), Gaps = 3/286 (1%)

Query: 227 NLLDRLREQNTQLYFKVAELVL--SEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMN 284
           ++L RL   N  ++ K  +LV+   E   + +V+ YS LID   K   L DA R+  KM 
Sbjct: 119 SMLVRLYRDNG-MWKKAIDLVMEMQEVGVELDVKIYSGLIDTFGKYGQLADARRVFDKMR 177

Query: 285 ENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPK 344
             GI PDI T   L+  + + GN+ RA   F S++  G  PD K++  +I      G+  
Sbjct: 178 AEGIKPDISTWNALIQWHCRVGNMKRALRFFTSMQEEGMYPDPKIFVMIISRLGEQGKWD 237

Query: 345 LGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
               L D M   G + S  +Y  L+  + Q G  R A +    +R E  Q +     +L 
Sbjct: 238 EIKKLFDGMKNRGFKESGAVYAVLVDIYGQYGHFRDARECIAALRAENMQLSPRVFCVLA 297

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
            AY Q G  +Q  +    M   G +P+      +I A+G      +AL +   ++  G  
Sbjct: 298 NAYAQQGLCEQTVNVLQLMEEEGFEPNLVMLNLLINAFGTAGRHLEALAVFQHIKDSGMS 357

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCD 510
           P   TYT L+    R +   +  ++  ++   G  P  K +  L D
Sbjct: 358 PDVVTYTTLMKTFMRAKKFEKVSEVYREMERAGCTPDRKAREMLHD 403



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 122/253 (48%)

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
           +R+L +M ++G+  +  T T+L+  Y++AG L+ +      +R  G + D   Y+ ++  
Sbjct: 65  DRLLLQMADDGVARNRRTYTLLLGAYARAGRLEDSWWVLGEMRRRGIRLDTAGYSMLVRL 124

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           Y + G  K  + LV  M   G+E   +IY  L+ +F + G +  A ++ + MR E  +P 
Sbjct: 125 YRDNGMWKKAIDLVMEMQEVGVELDVKIYSGLIDTFGKYGQLADARRVFDKMRAEGIKPD 184

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           + +   L++ + + G+  +A   F  M   G  PD +    +I+  G++   D+   L  
Sbjct: 185 ISTWNALIQWHCRVGNMKRALRFFTSMQEEGMYPDPKIFVMIISRLGEQGKWDEIKKLFD 244

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
            ++  GF+   A Y VLVD  G+     +A + +  +         ++   L + YA+ G
Sbjct: 245 GMKNRGFKESGAVYAVLVDIYGQYGHFRDARECIAALRAENMQLSPRVFCVLANAYAQQG 304

Query: 517 IEKKALQALGFLE 529
           + ++ +  L  +E
Sbjct: 305 LCEQTVNVLQLME 317



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 126/293 (43%), Gaps = 2/293 (0%)

Query: 246 LVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKA 305
           L ++++    N R Y+ L+ A+A+   LED+  +L +M   GI  D    ++LV +Y   
Sbjct: 69  LQMADDGVARNRRTYTLLLGAYARAGRLEDSWWVLGEMRRRGIRLDTAGYSMLVRLYRDN 128

Query: 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
           G   +A +    ++  G + D K+Y+ +I  +   GQ      + D M   GI+     +
Sbjct: 129 GMWKKAIDLVMEMQEVGVELDVKIYSGLIDTFGKYGQLADARRVFDKMRAEGIKPDISTW 188

Query: 366 LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
            AL++   + G+++ A +    M+ E   P  +   +++   G+ G  D+ +  FD M  
Sbjct: 189 NALIQWHCRVGNMKRALRFFTSMQEEGMYPDPKIFVMIISRLGEQGKWDEIKKLFDGMKN 248

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
            G K      A ++  YG+      A   +  L  +  +  P  + VL +   +  L  +
Sbjct: 249 RGFKESGAVYAVLVDIYGQYGHFRDARECIAALRAENMQLSPRVFCVLANAYAQQGLCEQ 308

Query: 486 AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
              +L  + E G  P   +   L + +  AG   +AL    F   K   M PD
Sbjct: 309 TVNVLQLMEEEGFEPNLVMLNLLINAFGTAGRHLEALAV--FQHIKDSGMSPD 359



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 72/321 (22%), Positives = 128/321 (39%), Gaps = 35/321 (10%)

Query: 283 MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
           M  +G  P       L+   S+AG    A+     +R HG +PD   YN+++   + A  
Sbjct: 1   MQASGGRPSSGAYARLIRALSRAGRALEAEALLLEMRRHGPRPDAAHYNALLEGLLAAAH 60

Query: 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG-------------------DVRGAGQ 383
            +L   L+  M   G+ R+   Y  LL ++A+ G                   D  G   
Sbjct: 61  LRLADRLLLQMADDGVARNRRTYTLLLGAYARAGRLEDSWWVLGEMRRRGIRLDTAGYSM 120

Query: 384 ITNIMR-----------IEEFQPT-----LESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           +  + R           + E Q       ++  + L++ +G+ G    AR  FD M   G
Sbjct: 121 LVRLYRDNGMWKKAIDLVMEMQEVGVELDVKIYSGLIDTFGKYGQLADARRVFDKMRAEG 180

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            KPD     ++I  + +   + +AL     ++++G  P P  + +++  LG     +E +
Sbjct: 181 IKPDISTWNALIQWHCRVGNMKRALRFFTSMQEEGMYPDPKIFVMIISRLGEQGKWDEIK 240

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
           +L   +   G      +   L D+Y + G  + A + +  L A+  Q+ P  F  + N  
Sbjct: 241 KLFDGMKNRGFKESGAVYAVLVDIYGQYGHFRDARECIAALRAENMQLSPRVFCVLANAY 300

Query: 548 LAGGFLQDAQRVHGLMEAQGF 568
              G  +    V  LME +GF
Sbjct: 301 AQQGLCEQTVNVLQLMEEEGF 321


>gi|125537003|gb|EAY83491.1| hypothetical protein OsI_38705 [Oryza sativa Indica Group]
          Length = 696

 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 114/239 (47%), Gaps = 1/239 (0%)

Query: 255 TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA 314
           ++V  Y+ +ID   K   ++ AE I+K+M + G +P++VT   L+  YSK GN+  AK  
Sbjct: 431 SSVMSYNMVIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVV 490

Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
            + L  HGF PD   + S+I    N  Q        + M   G+  + + Y  L+ +   
Sbjct: 491 LKMLMEHGFMPDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCS 550

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
            G V  A  + N M+I+   P   S   L+ ++ +    D+A   F+ M+R G  PD   
Sbjct: 551 AGHVNKAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDMVRFGVVPDSYT 610

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFE-PGPATYTVLVDWLGRLQLINEAEQLLGK 492
             S+I A   +  ++KA  +L   E+ G       +Y  +V  L ++   +EA +L+ K
Sbjct: 611 YNSLIKALCDERRVNKAKEILFARERSGCSTSNNQSYWPIVAALAKMGQFSEAGELMDK 669



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 79/368 (21%), Positives = 145/368 (39%), Gaps = 55/368 (14%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH---------- 300
           E  + NV  Y+ L+D       +E+A R+L KM E G+ P   T   LVH          
Sbjct: 252 EGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKMKEKGVAPSEATYRTLVHGVFRCLERDK 311

Query: 301 --------------MYSKAGNL--------DRAKEAFE---SLRSHGFQPDKKVYNSMIM 335
                         ++  A +         D AKEA E    + + G+  D   +  ++ 
Sbjct: 312 AYRMLSDWLGHETSLHPSACHTMLYCLSKKDMAKEAVEFAKRMSARGYLLDSTAFGIVMS 371

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
             +   +      L+D  I +G     ++Y+ +++S   C +   A      M ++    
Sbjct: 372 CSLKCLEVSDLCELLDSFIKNGGNPGFDVYIMVIKSLLNCKNFSKANHYLGHMVLKGLLS 431

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
           ++ S  ++++ + +AG  D+A      M   G  P+     ++I+ Y K   +  A  +L
Sbjct: 432 SVMSYNMVIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVL 491

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
             L + GF P   T+T L+D L     +++A     +++E G  P  +    L      A
Sbjct: 492 KMLMEHGFMPDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSA 551

Query: 516 GIEKKALQALGFLEAKKEQMGPDDF------------------ERIINGLLAGGFLQDAQ 557
           G   KA+  L   + K + + PD +                  E I N ++  G + D+ 
Sbjct: 552 GHVNKAIDLLN--KMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDMVRFGVVPDSY 609

Query: 558 RVHGLMEA 565
             + L++A
Sbjct: 610 TYNSLIKA 617



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 106/246 (43%)

Query: 323 FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAG 382
           F  D  V  +++ A    G   L   LV  +   G E SEE+  AL+ S+ + G  R A 
Sbjct: 114 FARDGGVRRALVGALWRRGPVVLSGRLVAEVRGCGCEVSEELVCALVESWGRLGLARYAH 173

Query: 383 QITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAY 442
           ++   M     +P+      L+ A  +AG  D A   F  M   G +PD     S++   
Sbjct: 174 EVFVQMPRLGLRPSTAVYNALIAASVRAGAVDTAYLRFQQMPADGCRPDRFTYNSLVHGV 233

Query: 443 GKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPF 502
            ++ ++D+A+ L+ ++E +G  P   TYT+LVD       + EA ++L K+ E G AP  
Sbjct: 234 CRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKMKEKGVAPSE 293

Query: 503 KIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGL 562
               +L     R     KA + L      +  + P     ++  L      ++A      
Sbjct: 294 ATYRTLVHGVFRCLERDKAYRMLSDWLGHETSLHPSACHTMLYCLSKKDMAKEAVEFAKR 353

Query: 563 MEAQGF 568
           M A+G+
Sbjct: 354 MSARGY 359



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/296 (20%), Positives = 121/296 (40%), Gaps = 6/296 (2%)

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A  +  +M   G+ P       L+    +AG +D A   F+ + + G +PD+  YNS++ 
Sbjct: 172 AHEVFVQMPRLGLRPSTAVYNALIAASVRAGAVDTAYLRFQQMPADGCRPDRFTYNSLVH 231

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
                G     + LV  M   GI  +   Y  L+  F   G V  A ++ + M+ +   P
Sbjct: 232 GVCRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKMKEKGVAP 291

Query: 396 TLESCTLLVEAYGQAGDPDQA-RSNFDYMIRLGHKPDDRCTA--SMIAAYGKKNLLDKAL 452
           +  +   LV    +  + D+A R   D+   LGH+     +A  +M+    KK++  +A+
Sbjct: 292 SEATYRTLVHGVFRCLERDKAYRMLSDW---LGHETSLHPSACHTMLYCLSKKDMAKEAV 348

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
                +   G+      + +++    +   +++  +LL    + G  P F + + +    
Sbjct: 349 EFAKRMSARGYLLDSTAFGIVMSCSLKCLEVSDLCELLDSFIKNGGNPGFDVYIMVIKSL 408

Query: 513 ARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
                  KA   LG +  K        +  +I+  +  G +  A+ +   M+ +GF
Sbjct: 409 LNCKNFSKANHYLGHMVLKGLLSSVMSYNMVIDCFVKAGAVDKAEEIVKEMQDKGF 464



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 65/132 (49%)

Query: 242 KVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM 301
           KV   +L E  F  ++  ++ LID     + L+DA    ++M E G+ P+  T  VL+H 
Sbjct: 488 KVVLKMLMEHGFMPDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHT 547

Query: 302 YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS 361
              AG++++A +    ++  G  PD   +N++I+++    +      + + M+  G+   
Sbjct: 548 LCSAGHVNKAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDMVRFGVVPD 607

Query: 362 EEIYLALLRSFA 373
              Y +L+++  
Sbjct: 608 SYTYNSLIKALC 619



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 80/202 (39%)

Query: 296 TVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMIT 355
             LV  + + G    A E F  +   G +P   VYN++I A V AG           M  
Sbjct: 157 CALVESWGRLGLARYAHEVFVQMPRLGLRPSTAVYNALIAASVRAGAVDTAYLRFQQMPA 216

Query: 356 SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ 415
            G       Y +L+    + G V  A ++   M  E  +P + + T+LV+ +  AG  ++
Sbjct: 217 DGCRPDRFTYNSLVHGVCRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEE 276

Query: 416 ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
           A    D M   G  P +    +++    +    DKA  +L +         P+    ++ 
Sbjct: 277 AFRMLDKMKEKGVAPSEATYRTLVHGVFRCLERDKAYRMLSDWLGHETSLHPSACHTMLY 336

Query: 476 WLGRLQLINEAEQLLGKISELG 497
            L +  +  EA +   ++S  G
Sbjct: 337 CLSKKDMAKEAVEFAKRMSARG 358


>gi|168038876|ref|XP_001771925.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162676707|gb|EDQ63186.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 831

 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 89/394 (22%), Positives = 169/394 (42%), Gaps = 12/394 (3%)

Query: 191 CKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDW---INLLDRLREQNTQLYFKVAELV 247
           C+ + DK L++ +      L A  +  L P+ + +   INL  +L + +  L        
Sbjct: 345 CRAV-DKCLNVFRR-----LKARTETGLSPTVVSYGCLINLYSKLGKMDKALQISNE--- 395

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + ++  + N + YS +ID + +     +A  + + M+  GI PD +T  +L++ + K G 
Sbjct: 396 MEDQGIKHNRKTYSMIIDGYVQLGDTANAFSVFEDMSNAGIKPDGITYNILMNAFCKNGQ 455

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           ++RA E    + S    P  + Y  +I  ++  G  ++    V  M  +G   S   Y  
Sbjct: 456 MNRALELLARMESGDCPPTLRTYTIIIDGFMKIGDLRMAFETVRDMKMAGFRPSAATYNV 515

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++   AQ G +  A  I + M +    P   S T L+E Y   GD   A   F+ +  +G
Sbjct: 516 IMHGLAQAGQMDRAASIIDEMVVAGVHPNERSYTTLIEGYACIGDMGLAFKYFNRIKEVG 575

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            KPD    AS++ A  K   +   L +  E+   G       Y +L+D   +   + EA 
Sbjct: 576 LKPDVIAYASLLKACCKAGRMQSTLAITAEMAAAGVPMNNYIYNILLDGWAQRGDMWEAS 635

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
            ++ K+   G  P      S  +   +AG   KA + +  ++ +  Q     +  +I+G 
Sbjct: 636 DIMQKMRHEGLTPDIHSYTSFINACCKAGDMLKATETIEQMKQQGVQPNLQAYTTLIHGW 695

Query: 548 LAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
            +  + + A   +  M++ G    + L   +++S
Sbjct: 696 ASASYPEKALICYDEMKSAGMIPDKPLYHCIMTS 729



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/385 (21%), Positives = 170/385 (44%), Gaps = 11/385 (2%)

Query: 202 EKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYS 261
           +  +D   ++  +K + +P + D   L++   ++  +   + A   +     + NV  Y+
Sbjct: 172 DHPKDARKVVDAFKRIKKPKQRDHTLLVNYYGKRGDKHSARAAFESMRAAGIEPNVHSYT 231

Query: 262 KLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSH 321
            LI A+A    L  A   +++M   G+ P+  T +V++  Y + G+++ A+  F+   S 
Sbjct: 232 NLIHAYAVAQDLRGAIACVEEMEAEGVSPNAATYSVIISGYGRLGDVEAAERWFQRALSE 291

Query: 322 GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGA 381
            +  +  +YN++I AY  AG  +   +++  M   G+E +  +Y  L+  +  C   R  
Sbjct: 292 NWHHNDVIYNNIIHAYCKAGNMERAEAIMTAMEEQGLEATLGLYNMLMDGYVHC---RAV 348

Query: 382 GQITNIMRI------EEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
            +  N+ R           PT+ S   L+  Y + G  D+A    + M   G K + +  
Sbjct: 349 DKCLNVFRRLKARTETGLSPTVVSYGCLINLYSKLGKMDKALQISNEMEDQGIKHNRKTY 408

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
           + +I  Y +      A ++  ++   G +P   TY +L++   +   +N A +LL ++ E
Sbjct: 409 SMIIDGYVQLGDTANAFSVFEDMSNAGIKPDGITYNILMNAFCKNGQMNRALELLARM-E 467

Query: 496 LGEAPP-FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQ 554
            G+ PP  +    + D + + G  + A + +  ++    +     +  I++GL   G + 
Sbjct: 468 SGDCPPTLRTYTIIIDGFMKIGDLRMAFETVRDMKMAGFRPSAATYNVIMHGLAQAGQMD 527

Query: 555 DAQRVHGLMEAQGFAASERLKVALI 579
            A  +   M   G   +ER    LI
Sbjct: 528 RAASIIDEMVVAGVHPNERSYTTLI 552



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/339 (21%), Positives = 148/339 (43%), Gaps = 5/339 (1%)

Query: 247 VLSEESFQTNVRDYSKLIDAH----AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMY 302
            + E+  +  +  Y+ L+D +    A + CL +  R LK   E G+ P +V+   L+++Y
Sbjct: 322 AMEEQGLEATLGLYNMLMDGYVHCRAVDKCL-NVFRRLKARTETGLSPTVVSYGCLINLY 380

Query: 303 SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE 362
           SK G +D+A +    +   G + ++K Y+ +I  YV  G      S+ + M  +GI+   
Sbjct: 381 SKLGKMDKALQISNEMEDQGIKHNRKTYSMIIDGYVQLGDTANAFSVFEDMSNAGIKPDG 440

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
             Y  L+ +F + G +  A ++   M   +  PTL + T++++ + + GD   A      
Sbjct: 441 ITYNILMNAFCKNGQMNRALELLARMESGDCPPTLRTYTIIIDGFMKIGDLRMAFETVRD 500

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
           M   G +P       ++    +   +D+A +++ E+   G  P   +YT L++    +  
Sbjct: 501 MKMAGFRPSAATYNVIMHGLAQAGQMDRAASIIDEMVVAGVHPNERSYTTLIEGYACIGD 560

Query: 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFER 542
           +  A +   +I E+G  P      SL     +AG  +  L     + A    M    +  
Sbjct: 561 MGLAFKYFNRIKEVGLKPDVIAYASLLKACCKAGRMQSTLAITAEMAAAGVPMNNYIYNI 620

Query: 543 IINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
           +++G    G + +A  +   M  +G         + I++
Sbjct: 621 LLDGWAQRGDMWEASDIMQKMRHEGLTPDIHSYTSFINA 659



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 62/113 (54%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+D  A+   + +A  I++KM   G+ PDI + T  ++   KAG++ +A E  E ++
Sbjct: 618 YNILLDGWAQRGDMWEASDIMQKMRHEGLTPDIHSYTSFINACCKAGDMLKATETIEQMK 677

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
             G QP+ + Y ++I  + +A  P+  +   D M ++G+   + +Y  ++ S 
Sbjct: 678 QQGVQPNLQAYTTLIHGWASASYPEKALICYDEMKSAGMIPDKPLYHCIMTSL 730


>gi|326503836|dbj|BAK02704.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 399

 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 142/311 (45%), Gaps = 12/311 (3%)

Query: 210 LLAEWKEL-LQPSRIDWINLLD-----RLREQNTQLYFKVAELVLSEESFQTNVRDYSKL 263
           +++E +E  + PS   +   LD     R  E+  ++Y +     +  E  +TN   Y+ +
Sbjct: 36  VISEMREHGIPPSATVYNAYLDGLLKARCAEKAVEVYQR-----MKRERCRTNTETYTLM 90

Query: 264 IDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGF 323
           I+ + K      A ++ K+M   G   +I T T LV+ +++ G  ++A+E FE ++  G 
Sbjct: 91  INVYGKSKQPMSAMKVFKEMQSIGCKANICTYTALVNAFAREGLCEKAEEVFEEMQQAGH 150

Query: 324 QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQ 383
           +PD   YN+++ AY  AG P+    +  +M   G E     Y  L+ ++ + G  R A  
Sbjct: 151 EPDVYAYNALMEAYSRAGFPQAASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHREAEA 210

Query: 384 ITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYG 443
           +   ++ +   PT++S  LL+ A+ ++G+  +       + + G  PD     +M+ AYG
Sbjct: 211 VFESLKRQGMAPTMKSHMLLLAAHARSGNVARCEEVMAQLHKSGLAPDTIALNAMLNAYG 270

Query: 444 KKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFK 503
           +   LD    LL  +E+ G      TY V V+  GR   +   E     +   G A    
Sbjct: 271 RAGRLDDMERLLAAMERRGTRD-VGTYNVAVNAYGRAGYLERMEAAFASLERRGLAADVV 329

Query: 504 IQVSLCDMYAR 514
              S    YAR
Sbjct: 330 TWTSRMGAYAR 340



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 142/314 (45%), Gaps = 7/314 (2%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+ A+     L  AE ++ +M E+GI P        +    KA   ++A E ++ ++
Sbjct: 17  YALLLRAYCTAGSLHRAEGVISEMREHGIPPSATVYNAYLDGLLKARCAEKAVEVYQRMK 76

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
               + + + Y  MI  Y  + QP   M +   M + G + +   Y AL+ +FA+ G   
Sbjct: 77  RERCRTNTETYTLMINVYGKSKQPMSAMKVFKEMQSIGCKANICTYTALVNAFAREGLCE 136

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++   M+    +P + +   L+EAY +AG P  A   F  M  +G +PD      ++
Sbjct: 137 KAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGFPQAASEIFSLMQHMGCEPDRASYNILV 196

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            AYG+  L  +A  +   L++ G  P   ++ +L+    R   +   E+++ ++ + G A
Sbjct: 197 DAYGRAGLHREAEAVFESLKRQGMAPTMKSHMLLLAAHARSGNVARCEEVMAQLHKSGLA 256

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD---FERIINGLLAGGFLQDA 556
           P      ++ + Y RAG     L  +  L A  E+ G  D   +   +N     G+L+  
Sbjct: 257 PDTIALNAMLNAYGRAG----RLDDMERLLAAMERRGTRDVGTYNVAVNAYGRAGYLERM 312

Query: 557 QRVHGLMEAQGFAA 570
           +     +E +G AA
Sbjct: 313 EAAFASLERRGLAA 326



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 125/285 (43%), Gaps = 4/285 (1%)

Query: 285 ENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPK 344
           E   VP   T  +L+  Y  AG+L RA+     +R HG  P   VYN+ +   + A   +
Sbjct: 7   EARCVPTEDTYALLLRAYCTAGSLHRAEGVISEMREHGIPPSATVYNAYLDGLLKARCAE 66

Query: 345 LGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
             + +   M       + E Y  ++  + +      A ++   M+    +  + + T LV
Sbjct: 67  KAVEVYQRMKRERCRTNTETYTLMINVYGKSKQPMSAMKVFKEMQSIGCKANICTYTALV 126

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
            A+ + G  ++A   F+ M + GH+PD     +++ AY +      A  +   ++  G E
Sbjct: 127 NAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGFPQAASEIFSLMQHMGCE 186

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQA 524
           P  A+Y +LVD  GR  L  EAE +   +   G AP  K  + L   +AR+G   +  + 
Sbjct: 187 PDRASYNILVDAYGRAGLHREAEAVFESLKRQGMAPTMKSHMLLLAAHARSGNVARCEEV 246

Query: 525 LGFLEAKKEQMGPDD--FERIINGLLAGGFLQDAQRVHGLMEAQG 567
           +  L   K  + PD      ++N     G L D +R+   ME +G
Sbjct: 247 MAQLH--KSGLAPDTIALNAMLNAYGRAGRLDDMERLLAAMERRG 289



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 112/255 (43%), Gaps = 34/255 (13%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           + N+  Y+ L++A A+E   E AE + ++M + G  PD+     L+  YS+AG    A E
Sbjct: 116 KANICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGFPQAASE 175

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            F  ++  G +PD+  YN ++ AY  AG  +   ++ + +   G+  + + ++ LL + A
Sbjct: 176 IFSLMQHMGCEPDRASYNILVDAYGRAGLHREAEAVFESLKRQGMAPTMKSHMLLLAAHA 235

Query: 374 QCGDVRGAGQIT---------------NIM--------RIEEFQPTLE-----------S 399
           + G+V    ++                N M        R+++ +  L            +
Sbjct: 236 RSGNVARCEEVMAQLHKSGLAPDTIALNAMLNAYGRAGRLDDMERLLAAMERRGTRDVGT 295

Query: 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELE 459
             + V AYG+AG  ++  + F  + R G   D     S + AY +K    + L +  E+ 
Sbjct: 296 YNVAVNAYGRAGYLERMEAAFASLERRGLAADVVTWTSRMGAYARKKEYRRCLEIFEEMV 355

Query: 460 KDGFEPGPATYTVLV 474
             G  P   T  VLV
Sbjct: 356 DAGCYPDAGTAKVLV 370



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 100/226 (44%), Gaps = 8/226 (3%)

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
           +E+ Y  LLR++   G +  A  + + MR     P+       ++   +A   ++A   +
Sbjct: 13  TEDTYALLLRAYCTAGSLHRAEGVISEMREHGIPPSATVYNAYLDGLLKARCAEKAVEVY 72

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
             M R   + +      MI  YGK      A+ +  E++  G +    TYT LV+   R 
Sbjct: 73  QRMKRERCRTNTETYTLMINVYGKSKQPMSAMKVFKEMQSIGCKANICTYTALVNAFARE 132

Query: 481 QLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG--PD 538
            L  +AE++  ++ + G  P      +L + Y+RAG  + A +    +    + MG  PD
Sbjct: 133 GLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGFPQAASEIFSLM----QHMGCEPD 188

Query: 539 --DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQ 582
              +  +++     G  ++A+ V   ++ QG A + +  + L+++ 
Sbjct: 189 RASYNILVDAYGRAGLHREAEAVFESLKRQGMAPTMKSHMLLLAAH 234



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 62/129 (48%), Gaps = 4/129 (3%)

Query: 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320
           + +++A+ +   L+D ER+L  M   G   D+ T  V V+ Y +AG L+R + AF SL  
Sbjct: 263 NAMLNAYGRAGRLDDMERLLAAMERRG-TRDVGTYNVAVNAYGRAGYLERMEAAFASLER 321

Query: 321 HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRG 380
            G   D   + S + AY    + +  + + + M+ +G          L+   A C D R 
Sbjct: 322 RGLAADVVTWTSRMGAYARKKEYRRCLEIFEEMVDAGCYPDAGTAKVLV---AACSDERQ 378

Query: 381 AGQITNIMR 389
             Q+T I+R
Sbjct: 379 VEQVTAIVR 387


>gi|356527777|ref|XP_003532484.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Glycine max]
          Length = 583

 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/382 (22%), Positives = 161/382 (42%), Gaps = 44/382 (11%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L+EE  +  +  Y+ L+ A  ++   +    +L K+ +NG+ PD +    +++ +S++G 
Sbjct: 48  LTEEGHKPTLITYTTLVAALTRQKRFKSIPALLSKVADNGMKPDSILLNAMINAFSESGK 107

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDM--------------- 352
           +D A + F+ ++ +G +P    YN++I  +  AG+P   M L++M               
Sbjct: 108 VDEAMKIFQKMKEYGCKPTTSTYNTLIKGFGIAGRPYESMKLLEMMGQDENVKPNDRTYN 167

Query: 353 ---------------------MITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391
                                M+ SGI+     Y  + R++AQ G+   A ++   M   
Sbjct: 168 ILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNGETERAERLILKMPYN 227

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAY---GKKNLL 448
             +P   +C +++  Y + G+  +A      M  LG  P+     S+I  Y      N +
Sbjct: 228 IVKPNERTCGIIISGYCKEGNMPEALRFLYRMKELGVDPNPVVFNSLIKGYLDTTDTNGV 287

Query: 449 DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSL 508
           D+AL L+ E    G +P   T++ +++      L+   E++   + + G  P       L
Sbjct: 288 DEALTLMEEF---GIKPDVVTFSTIMNAWSSAGLMENCEEIFNDMVKAGIEPDIHAYSIL 344

Query: 509 CDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
              Y RAG  +KA   L  +     Q     F  II+G  A G +  A R+   M   G 
Sbjct: 345 AKGYVRAGQPRKAEALLTSMSKYGVQPNVVIFTTIISGWCAAGKMDRAFRLCEKMHEMGT 404

Query: 569 AASERLKVALISSQTFNRQRQP 590
           + + +    LI    +   +QP
Sbjct: 405 SPNLKTYETLIWG--YGEAKQP 424



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 147/321 (45%), Gaps = 4/321 (1%)

Query: 241 FKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
            K+ E++  +E+ + N R Y+ LI A   +  LE+A  +L KM  +GI PD+VT   +  
Sbjct: 147 MKLLEMMGQDENVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMAR 206

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
            Y++ G  +RA+     +  +  +P+++    +I  Y   G     +  +  M   G++ 
Sbjct: 207 AYAQNGETERAERLILKMPYNIVKPNERTCGIIISGYCKEGNMPEALRFLYRMKELGVDP 266

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF--QPTLESCTLLVEAYGQAGDPDQARS 418
           +  ++ +L++ +    D  G  +   +M  EEF  +P + + + ++ A+  AG  +    
Sbjct: 267 NPVVFNSLIKGYLDTTDTNGVDEALTLM--EEFGIKPDVVTFSTIMNAWSSAGLMENCEE 324

Query: 419 NFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLG 478
            F+ M++ G +PD    + +   Y +     KA  LL  + K G +P    +T ++    
Sbjct: 325 IFNDMVKAGIEPDIHAYSILAKGYVRAGQPRKAEALLTSMSKYGVQPNVVIFTTIISGWC 384

Query: 479 RLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
               ++ A +L  K+ E+G +P  K   +L   Y  A    KA + L  +E +       
Sbjct: 385 AAGKMDRAFRLCEKMHEMGTSPNLKTYETLIWGYGEAKQPWKAEELLTTMEERGVVPEMS 444

Query: 539 DFERIINGLLAGGFLQDAQRV 559
             + + +   A G  ++A R+
Sbjct: 445 TMQLVADAWRAIGLFKEANRI 465



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 130/281 (46%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
            Q +V  Y+ +  A+A+    E AER++ KM  N + P+  T  +++  Y K GN+  A 
Sbjct: 194 IQPDVVTYNTMARAYAQNGETERAERLILKMPYNIVKPNERTCGIIISGYCKEGNMPEAL 253

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
                ++  G  P+  V+NS+I  Y++          + +M   GI+     +  ++ ++
Sbjct: 254 RFLYRMKELGVDPNPVVFNSLIKGYLDTTDTNGVDEALTLMEEFGIKPDVVTFSTIMNAW 313

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
           +  G +    +I N M     +P + + ++L + Y +AG P +A +    M + G +P+ 
Sbjct: 314 SSAGLMENCEEIFNDMVKAGIEPDIHAYSILAKGYVRAGQPRKAEALLTSMSKYGVQPNV 373

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               ++I+ +     +D+A  L  ++ + G  P   TY  L+   G  +   +AE+LL  
Sbjct: 374 VIFTTIISGWCAAGKMDRAFRLCEKMHEMGTSPNLKTYETLIWGYGEAKQPWKAEELLTT 433

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE 533
           + E G  P       + D +   G+ K+A + L   E + E
Sbjct: 434 MEERGVVPEMSTMQLVADAWRAIGLFKEANRILNGSEEESE 474



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 71/333 (21%), Positives = 143/333 (42%), Gaps = 7/333 (2%)

Query: 239 LYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVL 298
           + F  A+L     S QT V   +KL++    +    +A+ +   + E G  P ++T T L
Sbjct: 6   ISFSTAKL-RGNNSCQT-VHARTKLMNTLIGKGKPHEAQAVFNNLTEEGHKPTLITYTTL 63

Query: 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
           V   ++             +  +G +PD  + N+MI A+  +G+    M +   M   G 
Sbjct: 64  VAALTRQKRFKSIPALLSKVADNGMKPDSILLNAMINAFSESGKVDEAMKIFQKMKEYGC 123

Query: 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIM-RIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
           + +   Y  L++ F   G    + ++  +M + E  +P   +  +L++A+      ++A 
Sbjct: 124 KPTTSTYNTLIKGFGIAGRPYESMKLLEMMGQDENVKPNDRTYNILIQAWCTKKKLEEAW 183

Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
           +    M+  G +PD     +M  AY +    ++A  L+L++  +  +P   T  +++   
Sbjct: 184 NVLHKMVASGIQPDVVTYNTMARAYAQNGETERAERLILKMPYNIVKPNERTCGIIISGY 243

Query: 478 GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP 537
            +   + EA + L ++ ELG  P   +  SL   Y          +AL  +E  +  + P
Sbjct: 244 CKEGNMPEALRFLYRMKELGVDPNPVVFNSLIKGYLDTTDTNGVDEALTLME--EFGIKP 301

Query: 538 D--DFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
           D   F  I+N   + G +++ + +   M   G 
Sbjct: 302 DVVTFSTIMNAWSSAGLMENCEEIFNDMVKAGI 334


>gi|125556563|gb|EAZ02169.1| hypothetical protein OsI_24261 [Oryza sativa Indica Group]
          Length = 991

 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 146/326 (44%), Gaps = 8/326 (2%)

Query: 244 AELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS 303
           A L LS + +   +R  ++        +  E   R+  ++ ++G++PD VT   ++  Y 
Sbjct: 142 ARLALSPKCYNFALRSLARF-------DMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYC 194

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363
           K G+L  A   F  L   G +P+    N++++ Y   G+ +    L  MM   G +R+E 
Sbjct: 195 KEGDLTTAHRCFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEY 254

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
            Y  L++   +   VR A  +  +M+ +   P + + T L+    ++G    AR  FD M
Sbjct: 255 SYTILIQGLCEAKCVREALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAM 314

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483
            + G  P      +MI  Y K   ++ AL +   +EK+G  P   TY  L+  L   Q  
Sbjct: 315 PQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCD-QKT 373

Query: 484 NEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERI 543
            EAE+LL    + G  P      +L + Y  A     AL+    + + K ++    F ++
Sbjct: 374 EEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKL 433

Query: 544 INGLLAGGFLQDAQRVHGLMEAQGFA 569
           IN L+    L++A+ +   + A G  
Sbjct: 434 INSLIKKDRLKEAKELLNEISANGLV 459



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 116/247 (46%), Gaps = 3/247 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ L+     E+  ++A R+ + M +NG+ PD     VL     KAG   RA+EA+
Sbjct: 531 NVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAG---RAEEAY 587

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G    K  Y ++I  +  AG      +L++ MI  G       Y  LL +  + 
Sbjct: 588 SFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQ 647

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
             +  A  I + M +   + T+ + T+L++   + G  D A+  ++ M   GHKP     
Sbjct: 648 KRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTY 707

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
              I +Y K+  L+ A +L+L++E++G  P   TY +L+D  G +  I+ A   L ++  
Sbjct: 708 TVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVG 767

Query: 496 LGEAPPF 502
               P +
Sbjct: 768 ASCEPNY 774



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 165/365 (45%), Gaps = 23/365 (6%)

Query: 215 KELLQPSRIDWINLL----------DRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLI 264
           KE   P+ + + NL+          D LR +N  +  K           + +++ + KLI
Sbjct: 385 KEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKC----------KLDLQVFGKLI 434

Query: 265 DAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQ 324
           ++  K++ L++A+ +L +++ NG+VP+++T T ++  Y K+G +D A E  + +   G Q
Sbjct: 435 NSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQ 494

Query: 325 PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQI 384
           P+   YNS++   V   +    M+L+  M   GI  +   Y  LL+      D   A ++
Sbjct: 495 PNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRL 554

Query: 385 TNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGK 444
             +M     +P   +  +L +A  +AG  ++A   + +++R G         ++I  + K
Sbjct: 555 FEMMEQNGLKPDEHAYAVLTDALCKAGRAEEA---YSFIVRKGVALTKVYYTTLIDGFSK 611

Query: 445 KNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKI 504
               D A  L+  +  +G  P   TY+VL+  L + + +NEA  +L ++S  G       
Sbjct: 612 AGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFA 671

Query: 505 QVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLME 564
              L D   R G    A +    + +   +     +   IN     G L+DA+ +   ME
Sbjct: 672 YTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKME 731

Query: 565 AQGFA 569
            +G A
Sbjct: 732 REGVA 736



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/343 (22%), Positives = 141/343 (41%), Gaps = 37/343 (10%)

Query: 243 VAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMY 302
           V  L++  +    NVR ++ LI    K   + DA  +   M +NG+VP ++T   ++  Y
Sbjct: 274 VLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGY 333

Query: 303 SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM--------------------------- 335
           SK G ++ A +  E +  +G  PD   YN++I                            
Sbjct: 334 SKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKTEEAEELLNNAVKEGFTPTVV 393

Query: 336 -------AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIM 388
                   Y  A +    + + + M++S  +   +++  L+ S  +   ++ A ++ N +
Sbjct: 394 TFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEI 453

Query: 389 RIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLL 448
                 P + + T +++ Y ++G  D A      M R G +P+     S++    K   L
Sbjct: 454 SANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKL 513

Query: 449 DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSL 508
            KA+ LL +++KDG  P   TYT L+         + A +L   + + G  P       L
Sbjct: 514 HKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVL 573

Query: 509 CDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGG 551
            D   +AG   +A +A  F+  K   +    +  +I+G    G
Sbjct: 574 TDALCKAG---RAEEAYSFIVRKGVALTKVYYTTLIDGFSKAG 613



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 106/279 (37%), Gaps = 51/279 (18%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           ++    + +   Y+  I+++ KE  LEDAE ++ KM   G+ PD+VT  +L+      G 
Sbjct: 695 MTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGY 754

Query: 308 LDRAKEAF---------------------------------------------------E 316
           +DRA                                                       E
Sbjct: 755 IDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLE 814

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
            +  HG  P    Y+S+I  +  AG+ +    L+D M   G+  +E+IY  L++      
Sbjct: 815 RMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTK 874

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
               A    +IM    FQP LES  LLV      GD ++ +S F  ++ LG+  D+    
Sbjct: 875 FFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWK 934

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
            +     K   +D    +L  +EK        TY ++ +
Sbjct: 935 ILNDGLLKAGYVDICFQMLSIMEKRYCCISSQTYALVTN 973



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 142/331 (42%), Gaps = 7/331 (2%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           Q N   Y+ LI    +  C+ +A  +   M  +G  P++   T L+    K+G +  A+ 
Sbjct: 250 QRNEYSYTILIQGLCEAKCVREALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARL 309

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            F+++  +G  P    YN+MI+ Y   G+    + + ++M  +G    +  Y  L+    
Sbjct: 310 LFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLC 369

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
                  A ++ N    E F PT+ + T L+  Y  A   D A    + M+    K D +
Sbjct: 370 D-QKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQ 428

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
               +I +  KK+ L +A  LL E+  +G  P   TYT ++D   +   ++ A ++L  +
Sbjct: 429 VFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMM 488

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFL-EAKKEQMGPD--DFERIINGLLAG 550
              G  P      SL  MY     +KK  +A+  L + +K+ + P+   +  ++ G    
Sbjct: 489 ERDGCQPNAWTYNSL--MYGLVK-DKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDE 545

Query: 551 GFLQDAQRVHGLMEAQGFAASERLKVALISS 581
               +A R+  +ME  G    E     L  +
Sbjct: 546 HDFDNAFRLFEMMEQNGLKPDEHAYAVLTDA 576



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 71/317 (22%), Positives = 129/317 (40%), Gaps = 22/317 (6%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +S    +  +  Y+ LID   +E   + A+R+  +M  +G  P   T TV ++ Y K G 
Sbjct: 660 MSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGR 719

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L+ A++    +   G  PD   YN +I    + G      S +  M+ +  E +   Y  
Sbjct: 720 LEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCL 779

Query: 368 LLR-------SFAQCGDVRG---------AGQITNIMRIEEFQPTLESCTLLVEAYGQAG 411
           LL+       ++ +  D  G           Q+   M      PT+ + + L+  + +AG
Sbjct: 780 LLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAG 839

Query: 412 DPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYT 471
             ++A    D+M   G  P++     +I         +KAL+ +  + + GF+P   +Y 
Sbjct: 840 RLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYR 899

Query: 472 VLVDWLGRLQLINEAEQLLGKISELG---EAPPFKIQVSLCDMYARAGIEKKALQALGFL 528
           +LV  L       + + L   + ELG   +   +KI   L D   +AG      Q L  +
Sbjct: 900 LLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKI---LNDGLLKAGYVDICFQMLSIM 956

Query: 529 EAKKEQMGPDDFERIIN 545
           E +   +    +  + N
Sbjct: 957 EKRYCCISSQTYALVTN 973


>gi|414874052|tpg|DAA52609.1| TPA: hypothetical protein ZEAMMB73_367214 [Zea mays]
          Length = 716

 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 124/266 (46%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI  ++     ++A R+ K+M  + I+PD+VT  +L+    K G +  A++ F+++ 
Sbjct: 296 YNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMA 355

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  PD   Y  M+  Y   G       L D+M+  GI      +  L++++A CG + 
Sbjct: 356 MKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGMLD 415

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  I N MR    +P + + T ++ A  + G  D A   F+ MI  G  PD      +I
Sbjct: 416 KAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLI 475

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             +     L KA  L+LE+  +G       ++ +++ L +L  I +A+ +      +G+ 
Sbjct: 476 QGFCTHGSLLKAKELILEIMNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQH 535

Query: 500 PPFKIQVSLCDMYARAGIEKKALQAL 525
           P   +   L D Y   G  +KAL+  
Sbjct: 536 PDAVVYSMLMDGYCLVGKMEKALRVF 561



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 106/222 (47%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           ++  +S LI A+A    L+ A  I  +M ++G+ PD+VT T ++    + G +D A E F
Sbjct: 397 DIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKF 456

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G  PDK  Y+ +I  +   G       L+  ++ +G+      + +++ +  + 
Sbjct: 457 NQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELILEIMNNGMRLDIVFFSSIINNLCKL 516

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A  I ++       P     ++L++ Y   G  ++A   FD M+  G +P+    
Sbjct: 517 GRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVY 576

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
            +++  Y K   +D+ L+L  E+ + G +P    Y +++D L
Sbjct: 577 GTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGL 618



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 142/351 (40%), Gaps = 41/351 (11%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIV--PDIVTSTVLVHMYSKAGNLDRAKE 313
           +V  YS L+ +   +     A+ +L+ M E G V  PD+V  T ++  + K G++++A +
Sbjct: 185 DVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYTTVIDCFFKEGDVNKACD 244

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            F+ +   G  PD   Y+S++ A   A       + +  M+  G+      Y  L+  ++
Sbjct: 245 LFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYS 304

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD-- 431
             G  + A ++   MR     P + +  +L+ +  + G   +AR  FD M   G  PD  
Sbjct: 305 STGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVF 364

Query: 432 -----------DRCTASM----------------------IAAYGKKNLLDKALNLLLEL 458
                        C   M                      I AY    +LDKA+ +  E+
Sbjct: 365 SYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEM 424

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
              G +P   TYT ++  L R+  +++A +   ++ + G AP       L   +   G  
Sbjct: 425 RDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSL 484

Query: 519 KKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQDAQRVHGLMEAQG 567
            KA + +  LE     M  D   F  IIN L   G + DAQ +  L    G
Sbjct: 485 LKAKELI--LEIMNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVG 533



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 108/242 (44%), Gaps = 2/242 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  LI        L  A+ ++ ++  NG+  DIV  + +++   K G +  A+  F+   
Sbjct: 471 YHCLIQGFCTHGSLLKAKELILEIMNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTV 530

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G  PD  VY+ ++  Y   G+ +  + + D M+++GIE +  +Y  L+  + + G + 
Sbjct: 531 NVGQHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYGTLVNGYCKIGRID 590

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
               +   M  +  +P+     ++++    AG    A+  F  M   G    ++CT +++
Sbjct: 591 EGLSLFREMLQKGIKPSTILYNIIIDGLFVAGRTVPAKVKFHEMTESGIAI-NKCTYNIV 649

Query: 440 A-AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
              + K    D+A+ L  EL     +    T   ++  + + + + EA+ L   IS  G 
Sbjct: 650 LRGFFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGL 709

Query: 499 AP 500
            P
Sbjct: 710 VP 711


>gi|224064580|ref|XP_002301519.1| predicted protein [Populus trichocarpa]
 gi|222843245|gb|EEE80792.1| predicted protein [Populus trichocarpa]
          Length = 718

 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 148/320 (46%), Gaps = 5/320 (1%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG-NLD 309
           E +   V  +S +I A+ +     +A +I   M + G+ P++VT   ++    K G    
Sbjct: 106 EGYGNTVYAFSAIISAYGRSGYCNEAIKIFYSMKDYGLKPNLVTYNAVIDACGKGGVEFK 165

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
           R  E F+ +  +G QPD+  +NS++      G  +   SL   M+  GI++    Y  LL
Sbjct: 166 RVLEIFDEMLRNGMQPDRITFNSLLAVCSKGGLWEAARSLSCEMVNRGIDQDIFTYNTLL 225

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
            +  + G +  A +I + M  +   P + + + +++ Y +AG  D AR+ F+ M  LG  
Sbjct: 226 DAVCKGGQLDMAFEIMSEMPAKNILPNVVTYSTMIDGYAKAGRLDDARNLFNEMKFLGIS 285

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
            D     ++++ Y K    ++A+++  E+E  G      TY  L+   G+    +   ++
Sbjct: 286 LDRVSYNTLLSIYAKLGRFEEAMDVCREMENSGIRKDVVTYNALLGGYGKQYKYDVVRKV 345

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGL 547
             ++     +P      +L D+Y++ G+ ++A+    F E KK  +  D   +  +I+ L
Sbjct: 346 FEEMKARHVSPNLLTYSTLIDVYSKGGLYREAMDV--FREFKKAGLKADVVLYSALIDAL 403

Query: 548 LAGGFLQDAQRVHGLMEAQG 567
              G ++ A  +   M  +G
Sbjct: 404 CKNGLVESAVSLLDEMTKEG 423



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 108/255 (42%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++ L+   +K    E A  +  +M   GI  DI T   L+    K G LD A E    + 
Sbjct: 186 FNSLLAVCSKGGLWEAARSLSCEMVNRGIDQDIFTYNTLLDAVCKGGQLDMAFEIMSEMP 245

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           +    P+   Y++MI  Y  AG+     +L + M   GI      Y  LL  +A+ G   
Sbjct: 246 AKNILPNVVTYSTMIDGYAKAGRLDDARNLFNEMKFLGISLDRVSYNTLLSIYAKLGRFE 305

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  +   M     +  + +   L+  YG+    D  R  F+ M      P+    +++I
Sbjct: 306 EAMDVCREMENSGIRKDVVTYNALLGGYGKQYKYDVVRKVFEEMKARHVSPNLLTYSTLI 365

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             Y K  L  +A+++  E +K G +     Y+ L+D L +  L+  A  LL ++++ G  
Sbjct: 366 DVYSKGGLYREAMDVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIR 425

Query: 500 PPFKIQVSLCDMYAR 514
           P      S+ D + R
Sbjct: 426 PNVVTYNSIIDAFGR 440



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 68/308 (22%), Positives = 139/308 (45%), Gaps = 33/308 (10%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ L+  + K+   +   ++ ++M    + P+++T + L+ +YSK G    A + F
Sbjct: 322 DVVTYNALLGGYGKQYKYDVVRKVFEEMKARHVSPNLLTYSTLIDVYSKGGLYREAMDVF 381

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
              +  G + D  +Y+++I A    G  +  +SL+D M   GI  +   Y +++ +F + 
Sbjct: 382 REFKKAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRP 441

Query: 376 GD----VRGAGQITNIMRIEEFQPT-LESCT----------LLVEAYGQ--AGDPDQARS 418
                 V  AGQ T+ ++I+    + +E  T           +++ +GQ  A    QA++
Sbjct: 442 ATTESVVDDAGQ-TSELQIDSLSSSAVEKATKSLVADREDNRIIKIFGQLAAEKAGQAKN 500

Query: 419 N-----------FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGP 467
           +           F  M  L  KP+    ++++ A  + N  ++A  LL EL     +   
Sbjct: 501 SGGQEMMCILGVFHKMHELEIKPNVVTFSAILNACSRCNSFEEASMLLEELRLFDNQVYG 560

Query: 468 ATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGF 527
             + +L+ +  R  +  +A+ L  ++  +  +       +L DM    G +K+  Q L  
Sbjct: 561 VAHGLLMGY--RENVWEQAQSLFDEVKLMDSSTASAFYNALTDMLWHFG-QKRGAQ-LVV 616

Query: 528 LEAKKEQM 535
           LE K+ Q+
Sbjct: 617 LEGKRRQV 624



 Score = 47.0 bits (110), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 44/204 (21%), Positives = 86/204 (42%), Gaps = 1/204 (0%)

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           A++ +  + G V  A  +      E +  T+ + + ++ AYG++G  ++A   F  M   
Sbjct: 82  AMISTLGRLGKVEMAKTVFKAALTEGYGNTVYAFSAIISAYGRSGYCNEAIKIFYSMKDY 141

Query: 427 GHKPDDRCTASMIAAYGKKNL-LDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
           G KP+     ++I A GK  +   + L +  E+ ++G +P   T+  L+    +  L   
Sbjct: 142 GLKPNLVTYNAVIDACGKGGVEFKRVLEIFDEMLRNGMQPDRITFNSLLAVCSKGGLWEA 201

Query: 486 AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIIN 545
           A  L  ++   G         +L D   + G    A + +  + AK        +  +I+
Sbjct: 202 ARSLSCEMVNRGIDQDIFTYNTLLDAVCKGGQLDMAFEIMSEMPAKNILPNVVTYSTMID 261

Query: 546 GLLAGGFLQDAQRVHGLMEAQGFA 569
           G    G L DA+ +   M+  G +
Sbjct: 262 GYAKAGRLDDARNLFNEMKFLGIS 285



 Score = 40.0 bits (92), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 37/173 (21%), Positives = 74/173 (42%), Gaps = 9/173 (5%)

Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD--RCTASMIAAYGKKNLLDKALNLLLEL 458
             L+   G  GD  +A   F++ ++   K ++  +  ++MI+  G+   ++ A  +    
Sbjct: 44  VFLLRELGNRGDCKKAICCFEFAVKRERKKNEQGKLASAMISTLGRLGKVEMAKTVFKAA 103

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
             +G+      ++ ++   GR    NEA ++   + + G  P      ++ D   + G+E
Sbjct: 104 LTEGYGNTVYAFSAIISAYGRSGYCNEAIKIFYSMKDYGLKPNLVTYNAVIDACGKGGVE 163

Query: 519 KKALQALGFLEAKKEQMGPDDFERIINGLLA----GGFLQDAQRVHGLMEAQG 567
            K +  + F E  +  M PD      N LLA    GG  + A+ +   M  +G
Sbjct: 164 FKRVLEI-FDEMLRNGMQPDRI--TFNSLLAVCSKGGLWEAARSLSCEMVNRG 213



 Score = 40.0 bits (92), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 6/119 (5%)

Query: 365 YLALLRSFAQCGDVRGAGQITNIM----RIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
           Y+ LLR     GD + A           R +  Q  L S   ++   G+ G  + A++ F
Sbjct: 43  YVFLLRELGNRGDCKKAICCFEFAVKRERKKNEQGKLASA--MISTLGRLGKVEMAKTVF 100

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
              +  G+       +++I+AYG+    ++A+ +   ++  G +P   TY  ++D  G+
Sbjct: 101 KAALTEGYGNTVYAFSAIISAYGRSGYCNEAIKIFYSMKDYGLKPNLVTYNAVIDACGK 159


>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 988

 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 133/308 (43%), Gaps = 45/308 (14%)

Query: 227 NLLDRLREQNTQLY-------FKVAELVLSE---ESFQTNVRDYSKLIDAHAKENCLEDA 276
           +L+  L   NT +Y       F  A L+ SE   ++   +V  Y+ LID   +   L+ A
Sbjct: 342 DLMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYNTLIDGGCRTGNLDIA 401

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
           + +   M ++G+ PD+VT T+LV  + + GNL  AKE F+ + S G +PD   Y + I+ 
Sbjct: 402 KGMKDDMIKHGLCPDVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVG 461

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE----- 391
            +  G P     + + M   G       Y  L+    + G+   A ++   MR+E     
Sbjct: 462 ELKLGNPSKAFGMKEEMKAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPD 521

Query: 392 ------------------------------EFQPTLESCTLLVEAYGQAGDPDQARSNFD 421
                                            P++ + T+L+ +Y   G  D A+  FD
Sbjct: 522 HVTYTSIIHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFD 581

Query: 422 YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ 481
            M   G  P+     ++I    K+N++D A NL  E+E  G  P   TYT+L++    LQ
Sbjct: 582 EMQDKGVSPNVITYNALIYGLCKENMMDVAYNLFAEMESKGVSPNKYTYTILINENSNLQ 641

Query: 482 LINEAEQL 489
              +A +L
Sbjct: 642 YWQDALKL 649



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 146/334 (43%), Gaps = 4/334 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +S    + +   Y+ LI    K+   E+A  + ++M   G +P +VT   +++   + G 
Sbjct: 268 MSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGALPTVVTYNTIMYSLCRLGR 327

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A+   + + +    PD   YN++I  Y   G     + L   + +  +  S   Y  
Sbjct: 328 VSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYNT 387

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    + G++  A  + + M      P + + T+LV  + Q G+   A+  FD M+  G
Sbjct: 388 LIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQMGNLPMAKELFDEMLSRG 447

Query: 428 HKPDDRCTASMIAAYGKKNLLD--KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
            KPD  C A      G+  L +  KA  +  E++ +GF P   TY VL++ L +L   ++
Sbjct: 448 LKPD--CIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFPPDLITYNVLINGLCKLGNFDD 505

Query: 486 AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIIN 545
           A +L+ K+   G  P      S+   +  +G+ +KA +    +  K        +  +I+
Sbjct: 506 ANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIH 565

Query: 546 GLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
                G L  A++    M+ +G + +     ALI
Sbjct: 566 SYAVRGRLDFAKKYFDEMQDKGVSPNVITYNALI 599



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 137/343 (39%), Gaps = 14/343 (4%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           V+ +   +  +  ++ ++D+  KE  +  A  +L  M   G  P+ V+  VLV+  S  G
Sbjct: 197 VMIKCQIRPTIVTFNTMMDSRCKEGEVGRAVEVLDVMRMFGCDPNDVSYNVLVNGLSGKG 256

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
             DRAKE  E +   G +     YN +I  +      +    L   M+  G   +   Y 
Sbjct: 257 EFDRAKELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGALPTVVTYN 316

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            ++ S  + G V  A +  ++M  E+  P L S   L+  Y + G+  +A   F  +   
Sbjct: 317 TIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSK 376

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
              P      ++I    +   LD A  +  ++ K G  P   T+T+LV    ++  +  A
Sbjct: 377 NLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQMGNLPMA 436

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL----QALGFLEAKKEQMGPDD--- 539
           ++L  ++   G  P        C  Y    + +  L    +A G  E  K +  P D   
Sbjct: 437 KELFDEMLSRGLKPD-------CIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFPPDLIT 489

Query: 540 FERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQ 582
           +  +INGL   G   DA  +   M  +G         ++I + 
Sbjct: 490 YNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAH 532



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 68/318 (21%), Positives = 126/318 (39%), Gaps = 39/318 (12%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           + +V+    LI   AK+  LE    +  KM  NG++PD+     ++ +      ++  +E
Sbjct: 134 EVSVKLLDLLIQVFAKKLILEKCLMVFYKMVNNGLLPDVRNCNRVLKLLKDKSMVNEVEE 193

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            +  +     +P    +N+M+ +                       R +E          
Sbjct: 194 VYSVMIKCQIRPTIVTFNTMMDS-----------------------RCKE---------- 220

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
             G+V  A ++ ++MR+    P   S  +LV      G+ D+A+   + M  LG K    
Sbjct: 221 --GEVGRAVEVLDVMRMFGCDPNDVSYNVLVNGLSGKGEFDRAKELIEQMSMLGLKVSAH 278

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
               +I  + KK + ++A +L  E+   G  P   TY  ++  L RL  +++A + L  +
Sbjct: 279 TYNPLIRGFCKKEMFEEANDLRREMLGRGALPTVVTYNTIMYSLCRLGRVSDARRYLDVM 338

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGG 551
                 P      +L   Y+R G   +AL  L F E + + + P    +  +I+G    G
Sbjct: 339 VNEDLMPDLVSYNTLIYGYSRLGNFAEAL--LLFSELRSKNLVPSVVTYNTLIDGGCRTG 396

Query: 552 FLQDAQRVHGLMEAQGFA 569
            L  A+ +   M   G  
Sbjct: 397 NLDIAKGMKDDMIKHGLC 414


>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
 gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
          Length = 814

 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 146/336 (43%), Gaps = 4/336 (1%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVP-DIVTSTVLVHMYSKA 305
           ++  +  + ++  +  L+D   K    E A  +  +M   G VP D    T +V    KA
Sbjct: 179 IMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKA 238

Query: 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
             +  A+E F  +   GF PD   YN+MI     AG  +  + ++D M+      +E  Y
Sbjct: 239 KRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTY 298

Query: 366 LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
             L+ S  + G +  A ++  +M    F+P     T L+  + ++G   +A S FD M+ 
Sbjct: 299 GILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVE 358

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
            G++PD      MI    K    ++A     E+ + G +P   TYT ++  L ++  +  
Sbjct: 359 AGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVAN 418

Query: 486 AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIIN 545
           A +++  +   G  P     + L D + + G   +A Q L  L+          +  ++ 
Sbjct: 419 AFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVK 478

Query: 546 GLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
           GL  GG +++   +  L E Q  AA+E L   L  S
Sbjct: 479 GLCDGGSVENT--LDDLFE-QSKAAAENLDPGLCCS 511



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 92/375 (24%), Positives = 157/375 (41%), Gaps = 42/375 (11%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           V++   F+ N   Y+ LI   AK   +++A  +  +M E G  PD++T TV++    K+G
Sbjct: 320 VMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSG 379

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           N ++A ++FE +   G +P+   Y ++I      G+      ++  MI  G       Y+
Sbjct: 380 NFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYI 439

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAG--------------- 411
            LL  F + G +  A Q+ + +      P L+  + LV+     G               
Sbjct: 440 CLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENTLDDLFEQSKA 499

Query: 412 -----DP----------------DQARSNFDYMIRLGHKPDDRCTASMIAAY--GKKNLL 448
                DP                D+A   F  M+  G KPD      +I      ++N +
Sbjct: 500 AAENLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRV 559

Query: 449 DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSL 508
           ++A  LL +LE  G+ P   TYT L   L ++  ++ A ++L + S  G         +L
Sbjct: 560 ERAFALLHDLEMVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTAL 619

Query: 509 CDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQ 566
           C      G   +A+    F E  ++   PD   +  IINGL+ G  L+DA +    M  +
Sbjct: 620 CTGLCYQGQVDRAVSL--FQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGK 677

Query: 567 GFAASERLKVALISS 581
           G   +     AL+ +
Sbjct: 678 GQKPTVATYTALVQA 692



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 113/257 (43%), Gaps = 4/257 (1%)

Query: 248 LSEESFQTNVRDYSKLID--AHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKA 305
           +  E  + +   Y+ LI+    ++EN +E A  +L  +   G +PD VT T L     K 
Sbjct: 532 MVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEMVGYLPDAVTYTPLCIGLCKI 591

Query: 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
           G +DRA +  E   S G+  D   Y ++       GQ    +SL   M+  G       Y
Sbjct: 592 GEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAY 651

Query: 366 LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
             ++    +   +  A +  + M  +  +PT+ + T LV+A   AG+ D+A   F+ M+ 
Sbjct: 652 CCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFEGMLA 711

Query: 426 LGHKPDDRCTA-SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
            G          ++I  + K   +D AL L  ++   G  P   T   L D L R     
Sbjct: 712 RGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTE 771

Query: 485 EAEQLLGKISELGEAPP 501
           +A++LL +++  G +PP
Sbjct: 772 KAQELLQEMAA-GGSPP 787



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 107/259 (41%), Gaps = 36/259 (13%)

Query: 322 GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGA 381
           GFQ D   YN ++   V         ++ + M+ +GI  +   +  L+RSFA+      A
Sbjct: 114 GFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDA 173

Query: 382 GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT-ASMIA 440
                IM+ +  +P L +  +LV+   +AG  ++A   F  M+ +G  P DR    +M+ 
Sbjct: 174 VTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVR 233

Query: 441 AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
              K   + +A  +  ++EK GF P    Y  ++D L                       
Sbjct: 234 TLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGL----------------------- 270

Query: 501 PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVH 560
                       A+AG  ++AL+ L  + AK        +  ++N L   G L+ A+ + 
Sbjct: 271 ------------AKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELF 318

Query: 561 GLMEAQGFAASERLKVALI 579
            +M A GF  +  +  +LI
Sbjct: 319 RVMAASGFRPNSVIYTSLI 337



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/319 (19%), Positives = 123/319 (38%), Gaps = 38/319 (11%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ +I   +K   + +A RI+K M  +G  PD VT   L+  + K G LD A +  
Sbjct: 399 NVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLL 458

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQ--------------------PKLGMSLV----- 350
           + L      P+ ++Y+S++    + G                     P L  S++     
Sbjct: 459 DELDKCSSSPNLQLYSSLVKGLCDGGSVENTLDDLFEQSKAAAENLDPGLCCSIIVGLCK 518

Query: 351 -----------DMMITSGIERSEEIYLALLRSFAQCGD--VRGAGQITNIMRIEEFQPTL 397
                        M++ G +     Y  L+    +  +  V  A  + + + +  + P  
Sbjct: 519 TGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEMVGYLPDA 578

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
            + T L     + G+ D+A    +     G   D     ++      +  +D+A++L  E
Sbjct: 579 VTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQE 638

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI 517
           + + G  P  A Y  +++ L + + + +A +   ++   G+ P      +L      AG 
Sbjct: 639 MVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGN 698

Query: 518 EKKALQALGFLEAKKEQMG 536
             +A      + A+ E +G
Sbjct: 699 VDEAFHRFEGMLARGELVG 717


>gi|413934890|gb|AFW69441.1| hypothetical protein ZEAMMB73_914225 [Zea mays]
          Length = 504

 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 126/286 (44%), Gaps = 3/286 (1%)

Query: 227 NLLDRLREQNTQLYFKVAELVL--SEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMN 284
           ++L RL   N  ++ K  +LV+   E   + +V+ YS LID   K   L DA R+  KM 
Sbjct: 197 SMLVRLYRDNG-MWKKATDLVMEMQEVGVELDVKIYSGLIDTFGKYGQLADARRMFDKMR 255

Query: 285 ENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPK 344
             G+ PDI T   L+  + + GN+ RA   F S++  G  PD K++  +I      G+  
Sbjct: 256 AEGVRPDISTWNALIQWHCRVGNMKRALRFFTSMQEEGMYPDPKIFVMIISRLGEQGKWD 315

Query: 345 LGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
               L D M   G + S  +Y  L+  + Q G  R A      +R E  Q       ++ 
Sbjct: 316 EIKKLFDGMNNRGFKESGAVYAILVDIYGQYGHFRDAQDCIAALRAENTQLLPRVFCVIA 375

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
            AY Q G  +Q  +    M   G +P+     S+I A+G      +AL +   ++  G  
Sbjct: 376 NAYAQQGLCEQTVNVLQLMEEEGFEPNLVMLNSLINAFGTAGRHLEALAVFQHIKDSGMS 435

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCD 510
           P   TYT L+    R +   +  ++  ++   G AP  K +  L D
Sbjct: 436 PDVVTYTTLMKTFMRAKKFEKVSEVYREMERAGCAPDRKAREMLHD 481



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 75/343 (21%), Positives = 143/343 (41%), Gaps = 4/343 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           ++++    N R Y+ L+ A+A+   LED+  +L +M   GI  D    ++LV +Y   G 
Sbjct: 149 MADDGVARNRRTYTLLLGAYARAGRLEDSWWVLGEMRRWGIRLDTAGYSMLVRLYRDNGM 208

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
             +A +    ++  G + D K+Y+ +I  +   GQ      + D M   G+      + A
Sbjct: 209 WKKATDLVMEMQEVGVELDVKIYSGLIDTFGKYGQLADARRMFDKMRAEGVRPDISTWNA 268

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L++   + G+++ A +    M+ E   P  +   +++   G+ G  D+ +  FD M   G
Sbjct: 269 LIQWHCRVGNMKRALRFFTSMQEEGMYPDPKIFVMIISRLGEQGKWDEIKKLFDGMNNRG 328

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            K      A ++  YG+      A + +  L  +  +  P  + V+ +   +  L  +  
Sbjct: 329 FKESGAVYAILVDIYGQYGHFRDAQDCIAALRAENTQLLPRVFCVIANAYAQQGLCEQTV 388

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIIN 545
            +L  + E G  P   +  SL + +  AG   +AL    F   K   M PD   +  ++ 
Sbjct: 389 NVLQLMEEEGFEPNLVMLNSLINAFGTAGRHLEALAV--FQHIKDSGMSPDVVTYTTLMK 446

Query: 546 GLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQR 588
             +     +    V+  ME  G A   + +  L  +     QR
Sbjct: 447 TFMRAKKFEKVSEVYREMERAGCAPDRKAREMLHDATVVLEQR 489



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 116/248 (46%)

Query: 282 KMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAG 341
           +M ++G+  +  T T+L+  Y++AG L+ +      +R  G + D   Y+ ++  Y + G
Sbjct: 148 QMADDGVARNRRTYTLLLGAYARAGRLEDSWWVLGEMRRWGIRLDTAGYSMLVRLYRDNG 207

Query: 342 QPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCT 401
             K    LV  M   G+E   +IY  L+ +F + G +  A ++ + MR E  +P + +  
Sbjct: 208 MWKKATDLVMEMQEVGVELDVKIYSGLIDTFGKYGQLADARRMFDKMRAEGVRPDISTWN 267

Query: 402 LLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD 461
            L++ + + G+  +A   F  M   G  PD +    +I+  G++   D+   L   +   
Sbjct: 268 ALIQWHCRVGNMKRALRFFTSMQEEGMYPDPKIFVMIISRLGEQGKWDEIKKLFDGMNNR 327

Query: 462 GFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKA 521
           GF+   A Y +LVD  G+     +A+  +  +         ++   + + YA+ G+ ++ 
Sbjct: 328 GFKESGAVYAILVDIYGQYGHFRDAQDCIAALRAENTQLLPRVFCVIANAYAQQGLCEQT 387

Query: 522 LQALGFLE 529
           +  L  +E
Sbjct: 388 VNVLQLME 395



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 79/357 (22%), Positives = 139/357 (38%), Gaps = 36/357 (10%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y + I +HA  + L  +  +L  M  +G  P       L+   S+AG    A+     +R
Sbjct: 57  YDRAIQSHAGSD-LARSLGLLADMQASGGRPSGSAYARLIRALSRAGRALEAEALLLEMR 115

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +P+   YN+++   + A   +L   L+  M   G+ R+   Y  LL ++A+ G + 
Sbjct: 116 RLGPRPEAAHYNALLEGLLAAAHLRLADLLLLQMADDGVARNRRTYTLLLGAYARAGRLE 175

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            +  +   MR    +      ++LV  Y   G   +A      M  +G + D +  + +I
Sbjct: 176 DSWWVLGEMRRWGIRLDTAGYSMLVRLYRDNGMWKKATDLVMEMQEVGVELDVKIYSGLI 235

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             +GK   L  A  +  ++  +G  P  +T+  L+ W  R+  +  A +    + E G  
Sbjct: 236 DTFGKYGQLADARRMFDKMRAEGVRPDISTWNALIQWHCRVGNMKRALRFFTSMQEEGMY 295

Query: 500 PPFKIQVS-----------------------------------LCDMYARAGIEKKALQA 524
           P  KI V                                    L D+Y + G  + A   
Sbjct: 296 PDPKIFVMIISRLGEQGKWDEIKKLFDGMNNRGFKESGAVYAILVDIYGQYGHFRDAQDC 355

Query: 525 LGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
           +  L A+  Q+ P  F  I N     G  +    V  LME +GF  +  +  +LI++
Sbjct: 356 IAALRAENTQLLPRVFCVIANAYAQQGLCEQTVNVLQLMEEEGFEPNLVMLNSLINA 412


>gi|32489924|emb|CAE05516.1| OSJNBa0038P21.9 [Oryza sativa Japonica Group]
          Length = 825

 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/321 (24%), Positives = 143/321 (44%), Gaps = 1/321 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E+    NV  YS LI+   K   ++ AER+L++M   G+ P+ +T   L+H YS +G 
Sbjct: 250 MEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGM 309

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
              +   F+ + S    PD    NS + A    G+ K    + D M+  G +     Y A
Sbjct: 310 WKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGA 369

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           LL  +A  G + G   + N+M  E   P       L+ AY + G  D++   F+ M + G
Sbjct: 370 LLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQG 429

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD    +++I+A+ +   LD A+     +   G  P  A Y+ L+      + + +A+
Sbjct: 430 VNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAK 489

Query: 488 QLLGKISELGEAPP-FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
           +L+  +   G  PP  K   S+ +   + G   +    +  +    ++     F  +++G
Sbjct: 490 ELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDG 549

Query: 547 LLAGGFLQDAQRVHGLMEAQG 567
               G +++A  +   ME+ G
Sbjct: 550 YCLVGNMKEAVGLLDSMESVG 570



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/252 (19%), Positives = 106/252 (42%), Gaps = 6/252 (2%)

Query: 271 NCLEDAER------ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQ 324
           NC   A R      +  ++   G+ PD+ +   L+  +SK G +D+A + F  +   G  
Sbjct: 197 NCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIM 256

Query: 325 PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQI 384
           P+   Y+S+I       +      ++  M+ +G+  +   Y  L+  ++  G  + + ++
Sbjct: 257 PNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRV 316

Query: 385 TNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGK 444
              M      P + +C   + A  + G   +AR  FD M+  G KPD     +++  Y  
Sbjct: 317 FKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYAT 376

Query: 445 KNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKI 504
              +    NL   +  +G  P    +  L++   RL +++++  +   +++ G  P    
Sbjct: 377 AGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIIT 436

Query: 505 QVSLCDMYARAG 516
             ++   + R G
Sbjct: 437 FSTVISAFCRLG 448



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 88/178 (49%), Gaps = 4/178 (2%)

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
           E  PT+ +  +L+  Y +A  PD     F  ++R G  PD     ++I  + K+  +DKA
Sbjct: 184 EAAPTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKA 243

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
            +L  ++E+ G  P   TY+ L++ L + + +++AE++L ++   G  P       L   
Sbjct: 244 HDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHG 303

Query: 512 YARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQG 567
           Y+ +G+ K++++   F E     + PD  +    +  L   G +++A+ +   M  +G
Sbjct: 304 YSTSGMWKESVRV--FKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKG 359



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 118/316 (37%), Gaps = 7/316 (2%)

Query: 276 AERILKKMNENGI---VPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           A  + K+M+        P I T  +L++ Y +A   D     F  L   G  PD   YN+
Sbjct: 170 AVELFKRMDRCACPEAAPTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNA 229

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I  +   G+      L   M   GI  +   Y +L+    +  ++  A ++   M    
Sbjct: 230 LIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAG 289

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
            +P   +   L+  Y  +G   ++   F  M      PD     S + A  K   + +A 
Sbjct: 290 VRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEAR 349

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
           ++   +   G +P   +Y  L+        I   + L   +   G  P   +  +L + Y
Sbjct: 350 DIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAY 409

Query: 513 ARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAA 570
           AR G+  K+L  L F +  K+ + PD   F  +I+     G L DA      M   G   
Sbjct: 410 ARLGMMDKSL--LMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPP 467

Query: 571 SERLKVALISSQTFNR 586
              +   LI  Q   R
Sbjct: 468 DTAVYSCLIQGQCNRR 483



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 101/242 (41%), Gaps = 1/242 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTS-TVLVHMYSKAGNLDRAKEAFESL 318
           YS LI        L  A+ ++  M   GI P  +   T +++   K G +   K+  + +
Sbjct: 472 YSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLI 531

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
              G +P+   +NS++  Y   G  K  + L+D M + G+E     Y  L+  + + G +
Sbjct: 532 IHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRI 591

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             A  +   M  +    T  S  +++    QA     A+  F  MI  G        A++
Sbjct: 592 DDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYATV 651

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           +    + N  D+A  LL +L     +    T+ +++  + ++    EA++L   IS  G 
Sbjct: 652 LGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQEAKELFAAISTYGL 711

Query: 499 AP 500
            P
Sbjct: 712 VP 713



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/245 (21%), Positives = 92/245 (37%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  ++ L+D +     +++A  +L  M   G+ PDI T   LV  Y K G +D A   F
Sbjct: 539 NLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLF 598

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +           YN ++     A +  +   +   MI SG+  S   Y  +L    + 
Sbjct: 599 RDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYATVLGGLCRN 658

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
                A  +   +     +  + +  +++ A  + G   +A+  F  +   G  P     
Sbjct: 659 NCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQEAKELFAAISTYGLVPTILTY 718

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             MI    K+   + A NL   +EK    P       ++  L     + +A   L KI +
Sbjct: 719 RVMITNLIKEESFEDADNLFSSMEKSSCTPDSRILNEIIRMLLNKGEVAKAGNYLSKIDK 778

Query: 496 LGEAP 500
            G  P
Sbjct: 779 KGILP 783



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/275 (19%), Positives = 110/275 (40%)

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           ++ ++ +I+   KE  + + + ++  +   G  P+++T   LV  Y   GN+  A    +
Sbjct: 505 IKFFTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLD 564

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
           S+ S G +PD   YN+++  Y   G+    ++L   M+   +  +   Y  +L    Q  
Sbjct: 565 SMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQAR 624

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
               A ++ + M       ++ +   ++    +    D+A    + +  +  K D     
Sbjct: 625 RTIVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFN 684

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
            +I A  K     +A  L   +   G  P   TY V++  L + +   +A+ L   + + 
Sbjct: 685 IVIRAMFKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKS 744

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK 531
              P  +I   +  M    G   KA   L  ++ K
Sbjct: 745 SCTPDSRILNEIIRMLLNKGEVAKAGNYLSKIDKK 779



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/162 (20%), Positives = 67/162 (41%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E     ++  Y+ ++    + NC ++A  +L+K+    +  DI+T  +++    K G   
Sbjct: 638 ESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQ 697

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            AKE F ++ ++G  P    Y  MI   +     +   +L   M  S       I   ++
Sbjct: 698 EAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDSRILNEII 757

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAG 411
           R     G+V  AG   + +  +   P   + +LL+  +   G
Sbjct: 758 RMLLNKGEVAKAGNYLSKIDKKGILPEATTTSLLIYLFSVNG 799



 Score = 42.0 bits (97), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 39/221 (17%), Positives = 91/221 (41%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           + ++  Y+ L+D + K   ++DA  + + M    +    V+  +++H   +A     AKE
Sbjct: 572 EPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKE 631

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            F  +   G       Y +++              L++ + +  ++     +  ++R+  
Sbjct: 632 MFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMF 691

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           + G  + A ++   +      PT+ +  +++    +    + A + F  M +    PD R
Sbjct: 692 KVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDSR 751

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
               +I     K  + KA N L +++K G  P   T ++L+
Sbjct: 752 ILNEIIRMLLNKGEVAKAGNYLSKIDKKGILPEATTTSLLI 792


>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
          Length = 740

 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/324 (25%), Positives = 144/324 (44%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV+ Y+ LI   ++   LE A  +  KM + G+VP+ VT   L++     G    A + F
Sbjct: 337 NVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIF 396

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +  HG   + + YN +I      G  +  M L + M+  G   +   Y  L+  +   
Sbjct: 397 HWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTK 456

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G+V  A ++ ++M+    +P   +   LV  + + G  + A   F  M+  G  P+    
Sbjct: 457 GNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSY 516

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I  + K   +D AL+LL  +E+ G  P   +Y  +++ L +    +EAE++  K+ E
Sbjct: 517 TALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVE 576

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
            G  P      +L D   R G  + A +    +E +K       +  +I GL   G   +
Sbjct: 577 QGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADE 636

Query: 556 AQRVHGLMEAQGFAASERLKVALI 579
           A+ +   ME +G A  E    +LI
Sbjct: 637 AEILLKEMERKGLAPDEVTFTSLI 660



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 116/247 (46%)

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           V  Y+ LI+ +  +  + +A R+L  M ENG  PD  T   LV  +SK G L+ A   F+
Sbjct: 443 VVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQ 502

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
            +   G  P+   Y ++I  +   G+  + +SL+  M   G   + E Y A++   ++  
Sbjct: 503 EMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKEN 562

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
               A +I + M  +   P + + T L++   + G    A   F  M +    P+    +
Sbjct: 563 RFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYS 622

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
           S+I    ++   D+A  LL E+E+ G  P   T+T L+D    L  I+ A  LL ++ ++
Sbjct: 623 SLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDM 682

Query: 497 GEAPPFK 503
           G  P ++
Sbjct: 683 GCKPNYR 689



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 85/373 (22%), Positives = 158/373 (42%), Gaps = 2/373 (0%)

Query: 218 LQPSRIDWINL-LDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L P    + +L L   R +N  L F V + ++ +E    N   YS LI+    E  +++A
Sbjct: 229 LSPDVFTYTSLILGHCRNRNLDLAFGVFDRMV-KEGCDPNSVTYSTLINGLCNEGRVDEA 287

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
             +L++M E GI P + T T+ +       + + A E    ++  G +P+ + Y ++I  
Sbjct: 288 LDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISG 347

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
               G+ ++ + L   M+  G+  +   Y AL+      G    A +I + M        
Sbjct: 348 LSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLAN 407

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
            ++   +++     GD ++A   F+ M+++G  P      ++I  Y  K  ++ A  LL 
Sbjct: 408 TQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLD 467

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
            ++++G EP   TY  LV    +   +  A     ++ E G  P      +L D +++ G
Sbjct: 468 LMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDG 527

Query: 517 IEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKV 576
               AL  L  +E        + +  +INGL       +A+++   M  QG   +     
Sbjct: 528 KVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYT 587

Query: 577 ALISSQTFNRQRQ 589
            LI     N + Q
Sbjct: 588 TLIDGLCRNGRTQ 600



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/345 (22%), Positives = 146/345 (42%), Gaps = 10/345 (2%)

Query: 242 KVAELV--LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLV 299
           +VA+ +  +S   F  ++   + L+   AK   +E A  + K+M  +GI P ++T   L+
Sbjct: 146 RVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLI 205

Query: 300 HMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
           ++ SK G +  A+     +  +   PD   Y S+I+ +       L   + D M+  G +
Sbjct: 206 NILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCD 265

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
            +   Y  L+      G V  A  +   M  +  +PT+ + TL + A       ++A   
Sbjct: 266 PNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIEL 325

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
              M + G +P+ +   ++I+   +   L+ A+ L  ++ K+G  P   TY  L++ L  
Sbjct: 326 VARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCV 385

Query: 480 LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP-- 537
               + A ++   +   G     +    +       G  +KA+     L  K  +MGP  
Sbjct: 386 GGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAM----VLFEKMLKMGPLP 441

Query: 538 --DDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
               +  +ING L  G + +A R+  LM+  G    E     L+S
Sbjct: 442 TVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVS 486



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 98/218 (44%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y++L+   +K   LE A    ++M E G+ P+ V+ T L+  +SK G +D A    + + 
Sbjct: 481 YNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRME 540

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P+ + YN++I       +      + D M+  G+  +   Y  L+    + G  +
Sbjct: 541 EMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQ 600

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A +I + M   +  P L + + L+    Q G  D+A      M R G  PD+    S+I
Sbjct: 601 FAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLI 660

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
             +     +D A  LL  +   G +P   TY+VL+  L
Sbjct: 661 DGFVVLGRIDHAFLLLRRMVDMGCKPNYRTYSVLLKGL 698



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 117/263 (44%), Gaps = 4/263 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N + Y+++I        +E A  + +KM + G +P +VT   L++ Y   GN++ A    
Sbjct: 407 NTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLL 466

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + ++ +G +PD+  YN ++  +   G+ +        M+  G+  +   Y AL+   ++ 
Sbjct: 467 DLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKD 526

Query: 376 GDVRGAGQITNIMRIEEF--QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           G V  A  ++ + R+EE    P +ES   ++    +     +A    D M+  G  P+  
Sbjct: 527 GKVDIA--LSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVI 584

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
              ++I    +      A  +  ++EK    P   TY+ L+  L +    +EAE LL ++
Sbjct: 585 TYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEM 644

Query: 494 SELGEAPPFKIQVSLCDMYARAG 516
              G AP      SL D +   G
Sbjct: 645 ERKGLAPDEVTFTSLIDGFVVLG 667


>gi|449487793|ref|XP_004157803.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Cucumis sativus]
          Length = 864

 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/365 (23%), Positives = 148/365 (40%), Gaps = 16/365 (4%)

Query: 203 KEEDPSPLLAEWKELLQPSR---IDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRD 259
           K E  SP +  +  ++       +DW  LL    E             +  E  Q ++  
Sbjct: 210 KRERVSPNILTYNTVINACARGDLDWEGLLGLFAE-------------MRHEGVQPDLVT 256

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+ A A     ++AE + K M E GIVP+I T + +V  + K G L++     + + 
Sbjct: 257 YNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKEME 316

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           S G+ PD   YN +I A+   G  K  M +   M  +G   +   Y  LL  + + G   
Sbjct: 317 SEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYD 376

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
              ++   M+    +P   +  +L+  +G+ G   +  + F  ++     P+      ++
Sbjct: 377 DVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLV 436

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            A GK  L + A  +L  +   G  P    Y+ L++  G+  L +EA      ++E+G  
Sbjct: 437 FACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEALVAFNTMNEVGSK 496

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
                  SL   +AR G+ K+    L  +           F  II G    G  ++A + 
Sbjct: 497 STIDTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGIIEGYRQSGQYEEAIKA 556

Query: 560 HGLME 564
              ME
Sbjct: 557 FVEME 561



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 142/315 (45%)

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           +  YS +++   K   LE    +LK+M   G +PDI +  VL+  ++K G++  A + F+
Sbjct: 289 ITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFK 348

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
            +++ G  P+   Y+ ++  Y   G+      L   M  S  E     Y  L+R F + G
Sbjct: 349 QMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGG 408

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
             +    + + +  E   P +E+   LV A G+ G  + A+    +M   G  P  +  +
Sbjct: 409 YFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYS 468

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
            +I AYG+  L D+AL     + + G +    TY  L+    R  L  E E +L ++ E 
Sbjct: 469 GLIEAYGQAALYDEALVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREY 528

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDA 556
           G +   K    + + Y ++G  ++A++A   +E  + ++     E ++      G + ++
Sbjct: 529 GISRNAKSFSGIIEGYRQSGQYEEAIKAFVEMEKMRCELDEQTLEGVLGVYCFAGLVDES 588

Query: 557 QRVHGLMEAQGFAAS 571
           +     ++A G   S
Sbjct: 589 KEQFIEIKASGILPS 603



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/323 (21%), Positives = 138/323 (42%), Gaps = 1/323 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENC-LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           +  E    N+  Y+ +I+A A+ +   E    +  +M   G+ PD+VT   L+   +  G
Sbjct: 209 MKRERVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEGVQPDLVTYNTLLSACAARG 268

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
             D A+  F+++   G  P+   Y+ ++  +   G+ +    L+  M + G       Y 
Sbjct: 269 LGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYN 328

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+ + A+ G ++ A  +   M+     P   + ++L+  YG+ G  D  R  F  M   
Sbjct: 329 VLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQMKES 388

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
             +PD      +I  +G+     + + L  +L  +  +P   TY  LV   G+  L  +A
Sbjct: 389 SAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDA 448

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
           +++L  ++  G  P  K    L + Y +A +  +AL A   +     +   D +  +I+ 
Sbjct: 449 KKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEALVAFNTMNEVGSKSTIDTYNSLIHT 508

Query: 547 LLAGGFLQDAQRVHGLMEAQGFA 569
              GG  ++ + +   M   G +
Sbjct: 509 FARGGLYKEFEAILSRMREYGIS 531



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 84/399 (21%), Positives = 162/399 (40%), Gaps = 25/399 (6%)

Query: 184 PKPITGKCKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKV 243
           P+    +C  I    LSL    D S +  E+      +R DW   L   +    Q++ K 
Sbjct: 95  PRGSIARCLDIFKNRLSLN---DFSLVFKEF-----AARGDWQRSLRLFKYMQRQIWCKP 146

Query: 244 AELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS 303
            E +            Y+ +I    +E  LE    I  +M   G++  + + T L++ Y 
Sbjct: 147 NEHI------------YTIIISLLGREGLLEKCSEIFDEMASQGVIRSVFSYTALINAYG 194

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGM-SLVDMMITSGIERSE 362
           + G  + + E  E ++     P+   YN++I A         G+  L   M   G++   
Sbjct: 195 RNGQYETSLELLERMKRERVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEGVQPDL 254

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
             Y  LL + A  G    A  +   M      P + + + +VE +G+ G  ++       
Sbjct: 255 VTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKE 314

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
           M   G+ PD      +I A+ K   + +A+++  +++  G  P  +TY++L++  G+   
Sbjct: 315 MESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGR 374

Query: 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DF 540
            ++  +L  ++ E    P       L  ++   G  K+ +    F +   E + P+   +
Sbjct: 375 YDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTL--FHDLVDENIDPNMETY 432

Query: 541 ERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
           E ++     GG  +DA+++   M  +G   S +    LI
Sbjct: 433 EGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLI 471



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 103/226 (45%), Gaps = 7/226 (3%)

Query: 240 YFK-VAELV--LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTST 296
           YFK V  L   L +E+   N+  Y  L+ A  K    EDA++IL  MN  GIVP     +
Sbjct: 409 YFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYS 468

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
            L+  Y +A   D A  AF ++   G +     YNS+I  +   G  K   +++  M   
Sbjct: 469 GLIEAYGQAALYDEALVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREY 528

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL--LVEAYGQAGDPD 414
           GI R+ + +  ++  + Q G    A  I   + +E+ +  L+  TL  ++  Y  AG  D
Sbjct: 529 GISRNAKSFSGIIEGYRQSGQYEEA--IKAFVEMEKMRCELDEQTLEGVLGVYCFAGLVD 586

Query: 415 QARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
           +++  F  +   G  P   C   M+A Y K    D A  LL E+ K
Sbjct: 587 ESKEQFIEIKASGILPSVLCYCMMLAVYAKNGRWDDASELLDEMIK 632



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/270 (20%), Positives = 109/270 (40%), Gaps = 35/270 (12%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG--------- 306
           N   YS L++ + K    +D   +  +M E+   PD  T  +L+ ++ + G         
Sbjct: 358 NASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLF 417

Query: 307 ------NLDRAKEAFESL--------------------RSHGFQPDKKVYNSMIMAYVNA 340
                 N+D   E +E L                       G  P  K Y+ +I AY  A
Sbjct: 418 HDLVDENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQA 477

Query: 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
                 +   + M   G + + + Y +L+ +FA+ G  +    I + MR        +S 
Sbjct: 478 ALYDEALVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSF 537

Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
           + ++E Y Q+G  ++A   F  M ++  + D++    ++  Y    L+D++    +E++ 
Sbjct: 538 SGIIEGYRQSGQYEEAIKAFVEMEKMRCELDEQTLEGVLGVYCFAGLVDESKEQFIEIKA 597

Query: 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
            G  P    Y +++    +    ++A +LL
Sbjct: 598 SGILPSVLCYCMMLAVYAKNGRWDDASELL 627



 Score = 38.9 bits (89), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 3/127 (2%)

Query: 241 FKVAELVLS---EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTV 297
           +K  E +LS   E     N + +S +I+ + +    E+A +   +M +     D  T   
Sbjct: 515 YKEFEAILSRMREYGISRNAKSFSGIIEGYRQSGQYEEAIKAFVEMEKMRCELDEQTLEG 574

Query: 298 LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG 357
           ++ +Y  AG +D +KE F  +++ G  P    Y  M+  Y   G+      L+D MI + 
Sbjct: 575 VLGVYCFAGLVDESKEQFIEIKASGILPSVLCYCMMLAVYAKNGRWDDASELLDEMIKTR 634

Query: 358 IERSEEI 364
           +    ++
Sbjct: 635 VSSIHQV 641


>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 546

 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 146/316 (46%), Gaps = 3/316 (0%)

Query: 256 NVRDYSKLIDAHAKENC---LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           NV  Y+ LID + K      +  A+ ILK+M  +GI P+ VT  +L+  + K  N+  A 
Sbjct: 197 NVITYNTLIDGYCKMGKIGKMYKADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAM 256

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           + F  +   G +P+   YNS+I    N G+     +L D M+ S ++ +   + ALL  F
Sbjct: 257 KVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNGF 316

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            +   V+ AG++ + M  +   P + +  +L++AY +  + + A + +  M+  G  PD 
Sbjct: 317 CKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDV 376

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
                +IA   +K  L+ A NL+ E++    +    TY +L+D L     + +A +LL +
Sbjct: 377 STYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDE 436

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
           +   G  P      ++ D Y + G  + AL     +E          +  +I G      
Sbjct: 437 MCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLANVATYNVLIKGFCKKDK 496

Query: 553 LQDAQRVHGLMEAQGF 568
           L+DA  +   M  +G 
Sbjct: 497 LEDANGLLNEMLEKGL 512



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 147/317 (46%), Gaps = 10/317 (3%)

Query: 187 ITGKCKLITDKILSLEKEEDPSPLLAEWK-ELLQPSRIDWINLLDRL-REQNTQLYFKV- 243
           I G CK+   KI  + K +    +L E + + + P+ + +  L+D   +++N     KV 
Sbjct: 205 IDGYCKM--GKIGKMYKAD---AILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVF 259

Query: 244 AELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS 303
           AE+  + +  + NV  Y+ LI+       + +A  +  +M  + + P+I+T   L++ + 
Sbjct: 260 AEM--NRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNGFC 317

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363
           K   + +A E F+ +   G  P+   YN +I AY      +   +L  +M+  G+     
Sbjct: 318 KNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVS 377

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
            Y  L+    + GD+  A  + + M  +  +  L +  +L+++    G+  +A    D M
Sbjct: 378 TYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDEM 437

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483
            R G KP      +MI  Y K+  L  ALNL  ++EK G     ATY VL+    +   +
Sbjct: 438 CRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLANVATYNVLIKGFCKKDKL 497

Query: 484 NEAEQLLGKISELGEAP 500
            +A  LL ++ E G  P
Sbjct: 498 EDANGLLNEMLEKGLIP 514



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/329 (20%), Positives = 140/329 (42%), Gaps = 7/329 (2%)

Query: 249 SEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNL 308
           S+   + +V   + L+    K   + D E + K+M    I P +++  ++++   K G L
Sbjct: 120 SDYGLKLSVTSCNPLMSGLVKVGEIGDMEFVYKEMIRRRIEPTLISFNIVINGLCKVGKL 179

Query: 309 DRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGM-----SLVDMMITSGIERSEE 363
           ++A +  E ++  G   +   YN++I  Y   G  K+G      +++  M   GI  +E 
Sbjct: 180 NKAGDIIEDMKVRGVSANVITYNTLIDGYCKMG--KIGKMYKADAILKEMRADGICPNEV 237

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
            +  L+  F +  +V  A ++   M  +  +P + +   L+      G  ++A +  D M
Sbjct: 238 TFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQM 297

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483
           +    KP+     +++  + K  ++ +A  L  ++ K G  P   TY +L+D   + + +
Sbjct: 298 VNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENM 357

Query: 484 NEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERI 543
            +A  L   +   G  P       L     R G  + A   +  ++ K  +     +  +
Sbjct: 358 EDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNIL 417

Query: 544 INGLLAGGFLQDAQRVHGLMEAQGFAASE 572
           I+ L   G ++ A R+   M  +G   S+
Sbjct: 418 IDSLCNKGEMKKALRLLDEMCRKGLKPSQ 446



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 88/184 (47%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + ++    NV  Y+ LIDA+ K+  +EDA  + + M   G+ PD+ T   L+    + G+
Sbjct: 332 MPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGD 391

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L+ A+     + +   + D   YN +I +  N G+ K  + L+D M   G++ S+  Y  
Sbjct: 392 LEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNT 451

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++  + + G++R A  + + M        + +  +L++ + +    + A    + M+  G
Sbjct: 452 MIDGYCKEGNLRAALNLRSQMEKVGRLANVATYNVLIKGFCKKDKLEDANGLLNEMLEKG 511

Query: 428 HKPD 431
             P+
Sbjct: 512 LIPN 515


>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
 gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
          Length = 831

 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 119/255 (46%), Gaps = 2/255 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+  ++   ++  + DA+ + ++M   G  PD++T + L+H +S A   D+A E F
Sbjct: 516 NVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELF 575

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E++ S G +P+   YN ++       +P     L   M+  G +     Y  LL  F   
Sbjct: 576 ETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNV 635

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A ++ + M  +   P + +   L++ + +AG P +A+  F  M+    KPD    
Sbjct: 636 GKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSH 695

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKD-GFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
             MI    K   LD A+ +   +E+D G  P   TY  L+  L   Q ++EA ++  +I 
Sbjct: 696 NIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEID 755

Query: 495 ELGEAP-PFKIQVSL 508
            L  +P P    V L
Sbjct: 756 RLKLSPDPHAFNVLL 770



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/316 (21%), Positives = 140/316 (44%), Gaps = 4/316 (1%)

Query: 225 WINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKM 283
           + +LL+ L + +     F +   ++SE SF  +V  YS LID   K + L  AE++ K+M
Sbjct: 449 YNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQM 508

Query: 284 NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343
            +   VP++ T    ++   + G +  A+  +E + + G  PD   Y+++I  +  A + 
Sbjct: 509 IDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKH 568

Query: 344 KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403
                L + MI+ G   +   Y  LL    +      A ++   M      P   + T L
Sbjct: 569 DQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTL 628

Query: 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGF 463
           +  +   G  +QA   FD M+  GH PD      ++  + +     +A  L   +     
Sbjct: 629 LYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQC 688

Query: 464 EPGPATYTVLVDWLGRLQLINEAEQLLGKI-SELGEAPPFKIQVSLCDMYARAGIEKKAL 522
           +P   ++ +++D L + + +++A ++  ++  + G +P      SL  ++   G ++ + 
Sbjct: 689 KPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSL--IFGLCGEQRLSE 746

Query: 523 QALGFLEAKKEQMGPD 538
               F E  + ++ PD
Sbjct: 747 AMKVFKEIDRLKLSPD 762



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 65/304 (21%), Positives = 126/304 (41%), Gaps = 19/304 (6%)

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKV-YNSM 333
           +A ++ + M ++G  PD    + +V  + K  NLD A + F  +      P   V + + 
Sbjct: 252 EASKLFRAMVKSGCKPDATIYSYMVLAHCKLENLDEAFKLFLEMAVESKAPLNNVAWTAF 311

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           +     +G+ +        M  S +  S+ +Y  L+R   + G +  A +    +     
Sbjct: 312 LSGLCKSGKIEQAFEACRTMQES-LSSSQPVYDMLIRLLIESGRIDKAEEACLEIAGRNI 370

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
           QP+  +C  +++   +AG  D A S  + MI+ G+ PD    + +I    K + + +A  
Sbjct: 371 QPSSGTCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQE 430

Query: 454 LLLELEKD--GFEPGPATYTVLVDWLGRLQLINEAEQLLGK-ISELGEAPPFKIQVSLCD 510
            L  +++          +Y  L++ L + + +++A  +    +SE    P       L D
Sbjct: 431 FLQGMDRKISSRSSSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILID 490

Query: 511 MYARAGIEKKALQALGFLEAKKEQM-------GPDDFERIINGLLAGGFLQDAQRVHGLM 563
            + +       +  LG  E   +QM           +   +NGL+  G + DAQ V+  M
Sbjct: 491 GFCK-------IDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEM 543

Query: 564 EAQG 567
            A G
Sbjct: 544 VAAG 547



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 64/313 (20%), Positives = 118/313 (37%), Gaps = 70/313 (22%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L   +F+ +V  Y+ L+D   +   L+ A ++ +KM   G+VP+  T  VLV       N
Sbjct: 120 LQARNFKHDVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAVLVQSSCYERN 179

Query: 308 LDRAKEAFESLRSHGFQPDKKVYN-----------------------------------S 332
            D A   F  +   GF+P   +Y                                    +
Sbjct: 180 SDEAVRFFGEMVDKGFKPSSTLYQKVTECLKATGKEGEFSRVFGRDLEKRVAVEMMLKKA 239

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +++ +V   +      L   M+ SG +    IY  ++ +  +  ++  A ++   M +E 
Sbjct: 240 LLVNFVIQDKAIEASKLFRAMVKSGCKPDATIYSYMVLAHCKLENLDEAFKLFLEMAVES 299

Query: 393 FQPTLE-SCTLLVEAYGQAGDPDQA--------------RSNFDYMIRL----------- 426
             P    + T  +    ++G  +QA              +  +D +IRL           
Sbjct: 300 KAPLNNVAWTAFLSGLCKSGKIEQAFEACRTMQESLSSSQPVYDMLIRLLIESGRIDKAE 359

Query: 427 ---------GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
                      +P      S+I    K   +D AL+LL  + K G+ P  AT+++L++ L
Sbjct: 360 EACLEIAGRNIQPSSGTCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINEL 419

Query: 478 GRLQLINEAEQLL 490
            +   I EA++ L
Sbjct: 420 CKADKIQEAQEFL 432


>gi|242074832|ref|XP_002447352.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
 gi|241938535|gb|EES11680.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
          Length = 888

 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 136/307 (44%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS +I AH +   ++ AE ++++M E+GI   I     ++H Y+ A +  +    FE L+
Sbjct: 361 YSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVAQDEKKCLIVFERLK 420

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             GF+P    Y  +I  YV  G+    +++   M + GI+ + + Y  L+  F    D  
Sbjct: 421 ECGFRPSIISYGCLINLYVKIGKVPKALAVSKEMESHGIKHNNKTYSMLINGFIHLHDFA 480

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  I   M     QP      LLVEA+ + G+ D+A   F+ M +   +P +R    +I
Sbjct: 481 NAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMKKERMQPSNRTFRPII 540

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             +     + +AL+ L  + + G  P   TY  L+  L R   +  A  +L K+S  G A
Sbjct: 541 EGFAVAGDMKRALDTLDLMRRSGCAPTVMTYNALIHGLIRKHQVERAVSVLDKMSIAGIA 600

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P       +   YA +G   KA +    ++    ++    +E ++      G +Q A  V
Sbjct: 601 PNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAV 660

Query: 560 HGLMEAQ 566
              M  Q
Sbjct: 661 TREMSFQ 667



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 119/239 (49%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
            V  Y+ LI    +++ +E A  +L KM+  GI P+  T T+++  Y+ +G++ +A E F
Sbjct: 567 TVMTYNALIHGLIRKHQVERAVSVLDKMSIAGIAPNEHTYTIIMRGYAASGDIGKAFEYF 626

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             ++  G + D  +Y +++ A   +G+ +  +++   M    I R+  IY  L+  +A+ 
Sbjct: 627 TKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARR 686

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           GDV  A  +   M+ +   P + + T  + A  +AGD  +A +    M  +G KP+ +  
Sbjct: 687 GDVWEAADLMKQMKEDGIPPNIHTFTSYINACCKAGDMQRAENVIQEMADVGLKPNVKTF 746

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
            ++I  + K +L D+AL    E++  G +P  A Y  LV  L     + E     G +S
Sbjct: 747 TTLIKGWAKVSLPDRALKCFEEMKSAGLKPDEAAYHCLVTSLLSRATVMEGSTYTGILS 805



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 85/391 (21%), Positives = 164/391 (41%), Gaps = 55/391 (14%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAE----LVLSEE----SFQTNVRDYSKLIDAHAK 269
            +PS I +  L++        LY K+ +    L +S+E      + N + YS LI+    
Sbjct: 424 FRPSIISYGCLIN--------LYVKIGKVPKALAVSKEMESHGIKHNNKTYSMLINGFIH 475

Query: 270 ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKV 329
            +   +A  I + M ++G+ PD     +LV  + K GN+DRA   FE ++    QP  + 
Sbjct: 476 LHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMKKERMQPSNRT 535

Query: 330 YNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389
           +  +I  +  AG  K  +  +D+M  SG   +   Y AL+    +   V  A  + + M 
Sbjct: 536 FRPIIEGFAVAGDMKRALDTLDLMRRSGCAPTVMTYNALIHGLIRKHQVERAVSVLDKMS 595

Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD 449
           I    P   + T+++  Y  +GD  +A   F  +   G K D     +++ A  K   + 
Sbjct: 596 IAGIAPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQ 655

Query: 450 KAL-----------------------------------NLLLELEKDGFEPGPATYTVLV 474
            AL                                   +L+ ++++DG  P   T+T  +
Sbjct: 656 SALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAADLMKQMKEDGIPPNIHTFTSYI 715

Query: 475 DWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ 534
           +   +   +  AE ++ +++++G  P  K   +L   +A+  +  +AL+   F E K   
Sbjct: 716 NACCKAGDMQRAENVIQEMADVGLKPNVKTFTTLIKGWAKVSLPDRALKC--FEEMKSAG 773

Query: 535 MGPDD--FERIINGLLAGGFLQDAQRVHGLM 563
           + PD+  +  ++  LL+   + +     G++
Sbjct: 774 LKPDEAAYHCLVTSLLSRATVMEGSTYTGIL 804



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 132/320 (41%), Gaps = 39/320 (12%)

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           ++V  Y+K G+   A+  FE++R+ G +P+  V+ S++ AY  A   +  +S V+ M + 
Sbjct: 258 LMVVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSE 317

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQI----------------TNIM----------RI 390
           G+E +   Y  L+  + +  D   A ++                +NI+          R 
Sbjct: 318 GLEMTVVTYSILIAGYGKTNDAESADKLFKEAKTKLDNLNGIIYSNIIHAHCQSGNMDRA 377

Query: 391 EEFQPTLESCTL---------LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441
           EE    +E   +         ++  Y  A D  +    F+ +   G +P       +I  
Sbjct: 378 EELVREMEEDGIDAPIDVYHSMMHGYTVAQDEKKCLIVFERLKECGFRPSIISYGCLINL 437

Query: 442 YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
           Y K   + KAL +  E+E  G +    TY++L++    L     A  +   + + G  P 
Sbjct: 438 YVKIGKVPKALAVSKEMESHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGLQPD 497

Query: 502 FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQDAQRV 559
             I   L + + + G   +A++   F   KKE+M P +  F  II G    G ++ A   
Sbjct: 498 RAIYNLLVEAFCKMGNMDRAIRI--FERMKKERMQPSNRTFRPIIEGFAVAGDMKRALDT 555

Query: 560 HGLMEAQGFAASERLKVALI 579
             LM   G A +     ALI
Sbjct: 556 LDLMRRSGCAPTVMTYNALI 575



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 3/147 (2%)

Query: 247 VLSEESFQTNVRD---YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS 303
           V  E SFQ   R+   Y+ LID  A+   + +A  ++K+M E+GI P+I T T  ++   
Sbjct: 660 VTREMSFQKIPRNTFIYNILIDGWARRGDVWEAADLMKQMKEDGIPPNIHTFTSYINACC 719

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363
           KAG++ RA+   + +   G +P+ K + ++I  +     P   +   + M ++G++  E 
Sbjct: 720 KAGDMQRAENVIQEMADVGLKPNVKTFTTLIKGWAKVSLPDRALKCFEEMKSAGLKPDEA 779

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRI 390
            Y  L+ S      V      T I+ +
Sbjct: 780 AYHCLVTSLLSRATVMEGSTYTGILSV 806



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/225 (20%), Positives = 99/225 (44%)

Query: 324 QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQ 383
           +P ++ +  M++ Y   G      +  + M   GIE +  ++ +L+ ++A   D+RGA  
Sbjct: 250 KPSRREFGLMVVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALS 309

Query: 384 ITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYG 443
               M+ E  + T+ + ++L+  YG+  D + A   F          +    +++I A+ 
Sbjct: 310 CVEEMKSEGLEMTVVTYSILIAGYGKTNDAESADKLFKEAKTKLDNLNGIIYSNIIHAHC 369

Query: 444 KKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFK 503
           +   +D+A  L+ E+E+DG +     Y  ++      Q   +   +  ++ E G  P   
Sbjct: 370 QSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVAQDEKKCLIVFERLKECGFRPSII 429

Query: 504 IQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLL 548
               L ++Y + G   KAL     +E+   +     +  +ING +
Sbjct: 430 SYGCLINLYVKIGKVPKALAVSKEMESHGIKHNNKTYSMLINGFI 474


>gi|255586139|ref|XP_002533731.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526356|gb|EEF28650.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 106/410 (25%), Positives = 184/410 (44%), Gaps = 19/410 (4%)

Query: 188 TGKCKLITDKILSLEKEEDPSP------LLAEWKEL---LQPSRID--WINLLDRL--RE 234
           + K +L+   ++SL K  D S       LL EW  L   +   +ID   I L+ R+  RE
Sbjct: 141 SSKYELLQVDLISLLKALDYSGNWEKALLLFEWSVLNLGIANEKIDRHAIELMVRILGRE 200

Query: 235 QNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVT 294
               +  K+ + V+  + +  +VR Y+ ++ A+++      A  I ++MNE+G+ P +VT
Sbjct: 201 SQHTVASKLFD-VIPLDDYVLDVRAYTTILHAYSRTGKYHRAIEIFERMNESGLSPSLVT 259

Query: 295 STVLVHMYSKAG-NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMM 353
             V++ +Y K G + D+  E  + +RS G   D+   ++++ A    G           +
Sbjct: 260 YNVMLDVYGKMGRSWDKILELLDEMRSRGLDFDEFTCSTVLSACGREGLIDEAREFFSGL 319

Query: 354 ITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDP 413
            + G +     Y ALL  F + G    A  + + M      P   +   +V AY +AG  
Sbjct: 320 KSEGYKPGTVTYNALLHVFGKAGIFSEALSVLSEMEENNCPPDAVTYNEVVAAYVRAGFH 379

Query: 414 DQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVL 473
           ++     D M   G  P+     ++I AYG+   +DKAL +  ++ + G  P  ATY  +
Sbjct: 380 EEGAVVIDAMASKGIMPNAVTYTTIINAYGRVGDIDKALEMFDQMMELGCVPNVATYNAV 439

Query: 474 VDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE 533
           +  LG+  L  E  ++LG +   G +P      ++  M  + G+ K   Q   F E K  
Sbjct: 440 LGMLGKKSLSEEMMKILGHMKLNGCSPNHITWNTMLAMCGKKGMHKYVNQV--FREMKNC 497

Query: 534 QMGP--DDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
              P  D F  +I+     G   DA ++H  M   GF+       AL+++
Sbjct: 498 GFEPDRDTFNTLISAYGRCGSNNDAAKMHEEMIKAGFSPCINTYNALLNA 547



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 140/316 (44%), Gaps = 8/316 (2%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ ++    K++  E+  +IL  M  NG  P+ +T   ++ M  K G      + F
Sbjct: 432 NVATYNAVLGMLGKKSLSEEMMKILGHMKLNGCSPNHITWNTMLAMCGKKGMHKYVNQVF 491

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +++ GF+PD+  +N++I AY   G       + + MI +G       Y ALL + A+ 
Sbjct: 492 REMKNCGFEPDRDTFNTLISAYGRCGSNNDAAKMHEEMIKAGFSPCINTYNALLNALARR 551

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA----RSNFDYMIRLGHKPD 431
           GD + A  +   MR + F+P+  S +L+V +Y + G+        +S +D  I     P 
Sbjct: 552 GDWKAAESVILDMRNKGFRPSETSYSLMVHSYAKGGNVKGIEMIEKSIYDGDIF----PS 607

Query: 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
                +++ A  K   L         L+K G++P       ++    +  + + A ++L 
Sbjct: 608 WMLLRTLVLANFKCRSLTGMERAFQALQKHGYKPDLVLCNSMLSIFAKNNMYDRAHEMLR 667

Query: 492 KISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGG 551
            I + G  P      SL DMYAR G   KA + L  L+    +     +  +I G    G
Sbjct: 668 LIHDAGLQPDLVTHNSLMDMYARGGDCWKAEEVLRMLQTSGGKPDLVSYNTVIKGFCRKG 727

Query: 552 FLQDAQRVHGLMEAQG 567
            +Q+  R+   M + G
Sbjct: 728 LMQEGIRILSEMTSIG 743



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 116/261 (44%)

Query: 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320
           S ++ A  +E  +++A      +   G  P  VT   L+H++ KAG    A      +  
Sbjct: 297 STVLSACGREGLIDEAREFFSGLKSEGYKPGTVTYNALLHVFGKAGIFSEALSVLSEMEE 356

Query: 321 HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRG 380
           +   PD   YN ++ AYV AG  + G  ++D M + GI  +   Y  ++ ++ + GD+  
Sbjct: 357 NNCPPDAVTYNEVVAAYVRAGFHEEGAVVIDAMASKGIMPNAVTYTTIINAYGRVGDIDK 416

Query: 381 AGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIA 440
           A ++ + M      P + +   ++   G+    ++      +M   G  P+     +M+A
Sbjct: 417 ALEMFDQMMELGCVPNVATYNAVLGMLGKKSLSEEMMKILGHMKLNGCSPNHITWNTMLA 476

Query: 441 AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
             GKK +      +  E++  GFEP   T+  L+   GR    N+A ++  ++ + G +P
Sbjct: 477 MCGKKGMHKYVNQVFREMKNCGFEPDRDTFNTLISAYGRCGSNNDAAKMHEEMIKAGFSP 536

Query: 501 PFKIQVSLCDMYARAGIEKKA 521
                 +L +  AR G  K A
Sbjct: 537 CINTYNALLNALARRGDWKAA 557



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/262 (19%), Positives = 118/262 (45%), Gaps = 3/262 (1%)

Query: 241 FKVAELV---LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTV 297
           +K AE V   +  + F+ +   YS ++ ++AK   ++  E I K + +  I P  +    
Sbjct: 554 WKAAESVILDMRNKGFRPSETSYSLMVHSYAKGGNVKGIEMIEKSIYDGDIFPSWMLLRT 613

Query: 298 LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG 357
           LV    K  +L   + AF++L+ HG++PD  + NSM+  +           ++ ++  +G
Sbjct: 614 LVLANFKCRSLTGMERAFQALQKHGYKPDLVLCNSMLSIFAKNNMYDRAHEMLRLIHDAG 673

Query: 358 IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
           ++     + +L+  +A+ GD   A ++  +++    +P L S   +++ + + G   +  
Sbjct: 674 LQPDLVTHNSLMDMYARGGDCWKAEEVLRMLQTSGGKPDLVSYNTVIKGFCRKGLMQEGI 733

Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
                M  +G  P      + I+ Y  + +  +  +++  +      P   TY ++ D  
Sbjct: 734 RILSEMTSIGVGPCIFTYNTFISGYAAQGMFTEINDVISYMIVHNCRPNELTYKIVADGY 793

Query: 478 GRLQLINEAEQLLGKISELGEA 499
            + +  +EA   + KI ++ + 
Sbjct: 794 CKARRYDEAIDFVSKIKDVDDT 815


>gi|449469490|ref|XP_004152453.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Cucumis sativus]
          Length = 864

 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/365 (23%), Positives = 148/365 (40%), Gaps = 16/365 (4%)

Query: 203 KEEDPSPLLAEWKELLQPSR---IDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRD 259
           K E  SP +  +  ++       +DW  LL    E             +  E  Q ++  
Sbjct: 210 KRERVSPNILTYNTVINACARGDLDWEGLLGLFAE-------------MRHEGVQPDLVT 256

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+ A A     ++AE + K M E GIVP+I T + +V  + K G L++     + + 
Sbjct: 257 YNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKEME 316

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           S G+ PD   YN +I A+   G  K  M +   M  +G   +   Y  LL  + + G   
Sbjct: 317 SEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYD 376

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
              ++   M+    +P   +  +L+  +G+ G   +  + F  ++     P+      ++
Sbjct: 377 DVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLV 436

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            A GK  L + A  +L  +   G  P    Y+ L++  G+  L +EA      ++E+G  
Sbjct: 437 FACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEALVAFNTMNEVGSK 496

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
                  SL   +AR G+ K+    L  +           F  II G    G  ++A + 
Sbjct: 497 STIDTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGIIEGYRQSGQYEEAIKA 556

Query: 560 HGLME 564
              ME
Sbjct: 557 FVEME 561



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 142/315 (45%)

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           +  YS +++   K   LE    +LK+M   G +PDI +  VL+  ++K G++  A + F+
Sbjct: 289 ITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFK 348

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
            +++ G  P+   Y+ ++  Y   G+      L   M  S  E     Y  L+R F + G
Sbjct: 349 QMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGG 408

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
             +    + + +  E   P +E+   LV A G+ G  + A+    +M   G  P  +  +
Sbjct: 409 YFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYS 468

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
            +I AYG+  L D+AL     + + G +    TY  L+    R  L  E E +L ++ E 
Sbjct: 469 GLIEAYGQAALYDEALVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREY 528

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDA 556
           G +   K    + + Y ++G  ++A++A   +E  + ++     E ++      G + ++
Sbjct: 529 GISRNAKSFSGIIEGYRQSGQYEEAIKAFVEMEKMRCELDEQTLEGVLGVYCFAGLVDES 588

Query: 557 QRVHGLMEAQGFAAS 571
           +     ++A G   S
Sbjct: 589 KEQFIEIKASGILPS 603



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/323 (21%), Positives = 138/323 (42%), Gaps = 1/323 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENC-LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           +  E    N+  Y+ +I+A A+ +   E    +  +M   G+ PD+VT   L+   +  G
Sbjct: 209 MKRERVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEGVQPDLVTYNTLLSACAARG 268

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
             D A+  F+++   G  P+   Y+ ++  +   G+ +    L+  M + G       Y 
Sbjct: 269 LGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYN 328

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+ + A+ G ++ A  +   M+     P   + ++L+  YG+ G  D  R  F  M   
Sbjct: 329 VLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQMKES 388

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
             +PD      +I  +G+     + + L  +L  +  +P   TY  LV   G+  L  +A
Sbjct: 389 SAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDA 448

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
           +++L  ++  G  P  K    L + Y +A +  +AL A   +     +   D +  +I+ 
Sbjct: 449 KKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEALVAFNTMNEVGSKSTIDTYNSLIHT 508

Query: 547 LLAGGFLQDAQRVHGLMEAQGFA 569
              GG  ++ + +   M   G +
Sbjct: 509 FARGGLYKEFEAILSRMREYGIS 531



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 84/399 (21%), Positives = 162/399 (40%), Gaps = 25/399 (6%)

Query: 184 PKPITGKCKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKV 243
           P+    +C  I    LSL    D S +  E+      +R DW   L   +    Q++ K 
Sbjct: 95  PRGSIARCLDIFKNRLSLN---DFSLVFKEF-----AARGDWQRSLRLFKYMQRQIWCKP 146

Query: 244 AELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS 303
            E +            Y+ +I    +E  LE    I  +M   G++  + + T L++ Y 
Sbjct: 147 NEHI------------YTIIISLLGREGLLEKCSEIFDEMASQGVIRSVFSYTALINAYG 194

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGM-SLVDMMITSGIERSE 362
           + G  + + E  E ++     P+   YN++I A         G+  L   M   G++   
Sbjct: 195 RNGQYETSLELLERMKRERVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEGVQPDL 254

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
             Y  LL + A  G    A  +   M      P + + + +VE +G+ G  ++       
Sbjct: 255 VTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKE 314

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
           M   G+ PD      +I A+ K   + +A+++  +++  G  P  +TY++L++  G+   
Sbjct: 315 MESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGR 374

Query: 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DF 540
            ++  +L  ++ E    P       L  ++   G  K+ +    F +   E + P+   +
Sbjct: 375 YDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTL--FHDLVDENIDPNMETY 432

Query: 541 ERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
           E ++     GG  +DA+++   M  +G   S +    LI
Sbjct: 433 EGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLI 471



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 103/226 (45%), Gaps = 7/226 (3%)

Query: 240 YFK-VAELV--LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTST 296
           YFK V  L   L +E+   N+  Y  L+ A  K    EDA++IL  MN  GIVP     +
Sbjct: 409 YFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYS 468

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
            L+  Y +A   D A  AF ++   G +     YNS+I  +   G  K   +++  M   
Sbjct: 469 GLIEAYGQAALYDEALVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREY 528

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL--LVEAYGQAGDPD 414
           GI R+ + +  ++  + Q G    A  I   + +E+ +  L+  TL  ++  Y  AG  D
Sbjct: 529 GISRNAKSFSGIIEGYRQSGQYEEA--IKAFVEMEKMRCELDEQTLEGVLGVYCFAGLVD 586

Query: 415 QARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
           +++  F  +   G  P   C   M+A Y K    D A  LL E+ K
Sbjct: 587 ESKEQFIEIKASGILPSVLCYCMMLAVYAKNGRWDDASELLDEMIK 632



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/270 (20%), Positives = 109/270 (40%), Gaps = 35/270 (12%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG--------- 306
           N   YS L++ + K    +D   +  +M E+   PD  T  +L+ ++ + G         
Sbjct: 358 NASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLF 417

Query: 307 ------NLDRAKEAFESL--------------------RSHGFQPDKKVYNSMIMAYVNA 340
                 N+D   E +E L                       G  P  K Y+ +I AY  A
Sbjct: 418 HDLVDENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQA 477

Query: 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
                 +   + M   G + + + Y +L+ +FA+ G  +    I + MR        +S 
Sbjct: 478 ALYDEALVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSF 537

Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
           + ++E Y Q+G  ++A   F  M ++  + D++    ++  Y    L+D++    +E++ 
Sbjct: 538 SGIIEGYRQSGQYEEAIKAFVEMEKMRCELDEQTLEGVLGVYCFAGLVDESKEQFIEIKA 597

Query: 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
            G  P    Y +++    +    ++A +LL
Sbjct: 598 SGILPSVLCYCMMLAVYAKNGRWDDASELL 627



 Score = 38.9 bits (89), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 3/127 (2%)

Query: 241 FKVAELVLS---EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTV 297
           +K  E +LS   E     N + +S +I+ + +    E+A +   +M +     D  T   
Sbjct: 515 YKEFEAILSRMREYGISRNAKSFSGIIEGYRQSGQYEEAIKAFVEMEKMRCELDEQTLEG 574

Query: 298 LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG 357
           ++ +Y  AG +D +KE F  +++ G  P    Y  M+  Y   G+      L+D MI + 
Sbjct: 575 VLGVYCFAGLVDESKEQFIEIKASGILPSVLCYCMMLAVYAKNGRWDDASELLDEMIKTR 634

Query: 358 IERSEEI 364
           +    ++
Sbjct: 635 VSSIHQV 641


>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
 gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
          Length = 751

 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 147/317 (46%), Gaps = 8/317 (2%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ +I A+ K   +++A ++L+ M   G+ P+++T  ++++   + G ++      
Sbjct: 237 NVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVL 296

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   GF PD   YN+++  Y   G     + L   M+ +G+      Y +L+ +  + 
Sbjct: 297 AEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKA 356

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G++  A +  + M +   +P   + T L+  + Q G  D+A   +D MIR G  P     
Sbjct: 357 GNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTY 416

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            +++  +     +++A+ LL  +E  G  P   +Y+ ++    R Q ++ A Q+  ++ E
Sbjct: 417 NALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVE 476

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALG--FLEAKKEQMGPDDF--ERIINGLLAGG 551
            G +P      SL     +   E++ L      F E   + + PD+F    +ING    G
Sbjct: 477 KGVSPDAITYSSL----IQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEG 532

Query: 552 FLQDAQRVHGLMEAQGF 568
            L +A  +H  M  +GF
Sbjct: 533 DLNEALNLHDEMIKKGF 549



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 138/311 (44%), Gaps = 4/311 (1%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           E  + N+  Y+ +I+   +   +E+   +L +M+  G  PD VT   LV+ Y K GN  +
Sbjct: 267 EGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQ 326

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A      +  +G  PD   Y S+I     AG     M   D M   G+  +   Y +L+ 
Sbjct: 327 ALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLIN 386

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
            F+Q G +  A +I + M    F PT+ +   L+  +  +G  ++A      M   G  P
Sbjct: 387 GFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSP 446

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           D    +++IA + +   LD+A  +  E+ + G  P   TY+ L+  L   + +NEA  L 
Sbjct: 447 DVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLF 506

Query: 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLL 548
            ++      P      SL + Y + G   +AL      E  K+   PD   +  +INGL 
Sbjct: 507 QEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHD--EMIKKGFLPDTVTYNVLINGLN 564

Query: 549 AGGFLQDAQRV 559
                ++A+R+
Sbjct: 565 KQARTREAKRL 575



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 152/372 (40%), Gaps = 50/372 (13%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L++ + K      A  +  +M  NG+ PD+VT T L++   KAGNL+RA E F+ + 
Sbjct: 311 YNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMH 370

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +P+   Y S+I  +   G       + D MI SG   +   Y ALL      G + 
Sbjct: 371 VRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRME 430

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA----------------------- 416
            A  +   M  +   P + S + ++  + +  + D+A                       
Sbjct: 431 EAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLI 490

Query: 417 -------RSN-----FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
                  R N     F  M+     PD+    S+I  Y K+  L++ALNL  E+ K GF 
Sbjct: 491 QGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFL 550

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP---------------FKIQVSLC 509
           P   TY VL++ L +     EA++LL K+      P                FK  V+L 
Sbjct: 551 PDTVTYNVLINGLNKQARTREAKRLLLKLFYDESIPNGITYDTLIESCSDIEFKSVVALI 610

Query: 510 DMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
             +   G+  +A Q    +  + ++     +  II+G    G +  A +++  M   GF 
Sbjct: 611 KGFCMKGLMNEADQVFESMIKRNQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEMVDFGFI 670

Query: 570 ASERLKVALISS 581
                 +AL+ +
Sbjct: 671 PHTVTIIALVKA 682



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/300 (22%), Positives = 131/300 (43%), Gaps = 9/300 (3%)

Query: 253 FQTNVRDYSKLIDAHAKENCLED---AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           F   V  Y+ ++D+  +  C +    AE++ ++M  +G+  ++ +  +L+  +  AGNL+
Sbjct: 163 FMPGVLSYNAILDSIVR--CRKPVIFAEKVYREMIASGVSLNVFSYNILIRGFCAAGNLE 220

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
                FE +  +   P+   YN++I AY    +      L+  M   G+E +   Y  ++
Sbjct: 221 MGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVI 280

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               + G +     +   M  + F P   +   LV  Y + G+  QA      M+R G  
Sbjct: 281 NGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLP 340

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     S+I    K   L++A+    ++   G  P   TYT L++   +   ++EA ++
Sbjct: 341 PDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRI 400

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGL 547
             ++   G  P      +L + +  +G  ++A+  L  +E K   + PD   +  II G 
Sbjct: 401 WDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKG--LSPDVVSYSTIIAGF 458



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 100/237 (42%), Gaps = 15/237 (6%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  YS +I    +   L+ A ++  +M E G+ PD +T + L+    +   L+ A + F
Sbjct: 447 DVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLF 506

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + + +    PD+  Y S+I  Y   G     ++L D MI  G       Y  L+    + 
Sbjct: 507 QEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQ 566

Query: 376 GDVRGAGQITNIMRIEEFQPT-------LESCT--------LLVEAYGQAGDPDQARSNF 420
              R A ++   +  +E  P        +ESC+         L++ +   G  ++A   F
Sbjct: 567 ARTREAKRLLLKLFYDESIPNGITYDTLIESCSDIEFKSVVALIKGFCMKGLMNEADQVF 626

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
           + MI+   KP++     +I  + +   + KA  L  E+   GF P   T   LV  L
Sbjct: 627 ESMIKRNQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEMVDFGFIPHTVTIIALVKAL 683



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/313 (21%), Positives = 129/313 (41%), Gaps = 9/313 (2%)

Query: 272 CLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYN 331
           CL+D   +    N +  V D+V  +      S    +++A    +  + +GF P    YN
Sbjct: 120 CLKDTYFMC---NSSSAVFDLVVKSC-----SYLNFIEKALNIVDLAKLNGFMPGVLSYN 171

Query: 332 SMIMAYVNAGQPKLGMSLVDM-MITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRI 390
           +++ + V   +P +    V   MI SG+  +   Y  L+R F   G++    +    M  
Sbjct: 172 AILDSIVRCRKPVIFAEKVYREMIASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMER 231

Query: 391 EEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDK 450
               P + +   ++ AY +    D+A      M   G +P+      +I    +   +++
Sbjct: 232 NRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEE 291

Query: 451 ALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCD 510
              +L E+++ GF P   TY  LV+   ++   ++A  L  ++   G  P      SL +
Sbjct: 292 TSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLIN 351

Query: 511 MYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAA 570
              +AG   +A++    +  +  +     +  +ING    GF+ +A R+   M   GF  
Sbjct: 352 TMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPP 411

Query: 571 SERLKVALISSQT 583
           +     AL++   
Sbjct: 412 TIVTYNALLNGHC 424



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 96/224 (42%), Gaps = 15/224 (6%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI+ + KE  L +A  +  +M + G +PD VT  VL++  +K      AK     L 
Sbjct: 521 YTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKLF 580

Query: 320 SHGFQPDKKVYNSMI-----------MAYVNAGQPKLGMSLVDMMITSGIERS----EEI 364
                P+   Y+++I           +A +     K  M+  D +  S I+R+    E +
Sbjct: 581 YDESIPNGITYDTLIESCSDIEFKSVVALIKGFCMKGLMNEADQVFESMIKRNQKPNEAV 640

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
           Y  ++    + G+V  A ++   M    F P   +   LV+A    G  +Q       ++
Sbjct: 641 YNVIIHGHCRDGNVHKAHKLYKEMVDFGFIPHTVTIIALVKALYSEGMDEQLNLVIRDIL 700

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPA 468
           R     D   + +++    K+  +D   NLL E+ KDGF P  A
Sbjct: 701 RSCKLSDAELSKALVQINHKEGNIDAVFNLLTEMAKDGFLPSGA 744


>gi|222628658|gb|EEE60790.1| hypothetical protein OsJ_14375 [Oryza sativa Japonica Group]
          Length = 754

 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/321 (24%), Positives = 143/321 (44%), Gaps = 1/321 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E+    NV  YS LI+   K   ++ AER+L++M   G+ P+ +T   L+H YS +G 
Sbjct: 179 MEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGM 238

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
              +   F+ + S    PD    NS + A    G+ K    + D M+  G +     Y A
Sbjct: 239 WKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGA 298

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           LL  +A  G + G   + N+M  E   P       L+ AY + G  D++   F+ M + G
Sbjct: 299 LLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQG 358

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD    +++I+A+ +   LD A+     +   G  P  A Y+ L+      + + +A+
Sbjct: 359 VNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAK 418

Query: 488 QLLGKISELGEAPP-FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
           +L+  +   G  PP  K   S+ +   + G   +    +  +    ++     F  +++G
Sbjct: 419 ELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDG 478

Query: 547 LLAGGFLQDAQRVHGLMEAQG 567
               G +++A  +   ME+ G
Sbjct: 479 YCLVGNMKEAVGLLDSMESVG 499



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/252 (19%), Positives = 106/252 (42%), Gaps = 6/252 (2%)

Query: 271 NCLEDAER------ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQ 324
           NC   A R      +  ++   G+ PD+ +   L+  +SK G +D+A + F  +   G  
Sbjct: 126 NCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIM 185

Query: 325 PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQI 384
           P+   Y+S+I       +      ++  M+ +G+  +   Y  L+  ++  G  + + ++
Sbjct: 186 PNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRV 245

Query: 385 TNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGK 444
              M      P + +C   + A  + G   +AR  FD M+  G KPD     +++  Y  
Sbjct: 246 FKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYAT 305

Query: 445 KNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKI 504
              +    NL   +  +G  P    +  L++   RL +++++  +   +++ G  P    
Sbjct: 306 AGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIIT 365

Query: 505 QVSLCDMYARAG 516
             ++   + R G
Sbjct: 366 FSTVISAFCRLG 377



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 88/178 (49%), Gaps = 4/178 (2%)

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
           E  PT+ +  +L+  Y +A  PD     F  ++R G  PD     ++I  + K+  +DKA
Sbjct: 113 EAAPTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKA 172

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
            +L  ++E+ G  P   TY+ L++ L + + +++AE++L ++   G  P       L   
Sbjct: 173 HDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHG 232

Query: 512 YARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQG 567
           Y+ +G+ K++++   F E     + PD  +    +  L   G +++A+ +   M  +G
Sbjct: 233 YSTSGMWKESVRV--FKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKG 288



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 118/316 (37%), Gaps = 7/316 (2%)

Query: 276 AERILKKMNENGI---VPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           A  + K+M+        P I T  +L++ Y +A   D     F  L   G  PD   YN+
Sbjct: 99  AVELFKRMDRCACPEAAPTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNA 158

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I  +   G+      L   M   GI  +   Y +L+    +  ++  A ++   M    
Sbjct: 159 LIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAG 218

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
            +P   +   L+  Y  +G   ++   F  M      PD     S + A  K   + +A 
Sbjct: 219 VRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEAR 278

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
           ++   +   G +P   +Y  L+        I   + L   +   G  P   +  +L + Y
Sbjct: 279 DIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAY 338

Query: 513 ARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAA 570
           AR G+  K+L  L F +  K+ + PD   F  +I+     G L DA      M   G   
Sbjct: 339 ARLGMMDKSL--LMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPP 396

Query: 571 SERLKVALISSQTFNR 586
              +   LI  Q   R
Sbjct: 397 DTAVYSCLIQGQCNRR 412



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 101/242 (41%), Gaps = 1/242 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTS-TVLVHMYSKAGNLDRAKEAFESL 318
           YS LI        L  A+ ++  M   GI P  +   T +++   K G +   K+  + +
Sbjct: 401 YSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLI 460

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
              G +P+   +NS++  Y   G  K  + L+D M + G+E     Y  L+  + + G +
Sbjct: 461 IHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRI 520

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             A  +   M  +    T  S  +++    QA     A+  F  MI  G        A++
Sbjct: 521 DDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYATV 580

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           +    + N  D+A  LL +L     +    T+ +++  + ++    EA++L   IS  G 
Sbjct: 581 LGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQEAKELFAAISTYGL 640

Query: 499 AP 500
            P
Sbjct: 641 VP 642



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/245 (21%), Positives = 92/245 (37%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  ++ L+D +     +++A  +L  M   G+ PDI T   LV  Y K G +D A   F
Sbjct: 468 NLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLF 527

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +           YN ++     A +  +   +   MI SG+  S   Y  +L    + 
Sbjct: 528 RDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYATVLGGLCRN 587

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
                A  +   +     +  + +  +++ A  + G   +A+  F  +   G  P     
Sbjct: 588 NCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQEAKELFAAISTYGLVPTILTY 647

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             MI    K+   + A NL   +EK    P       ++  L     + +A   L KI +
Sbjct: 648 RVMITNLIKEESFEDADNLFSSMEKSSCTPDSRILNEIIRMLLNKGEVAKAGNYLSKIDK 707

Query: 496 LGEAP 500
            G  P
Sbjct: 708 KGILP 712



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/275 (19%), Positives = 110/275 (40%)

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           ++ ++ +I+   KE  + + + ++  +   G  P+++T   LV  Y   GN+  A    +
Sbjct: 434 IKFFTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLD 493

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
           S+ S G +PD   YN+++  Y   G+    ++L   M+   +  +   Y  +L    Q  
Sbjct: 494 SMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQAR 553

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
               A ++ + M       ++ +   ++    +    D+A    + +  +  K D     
Sbjct: 554 RTIVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFN 613

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
            +I A  K     +A  L   +   G  P   TY V++  L + +   +A+ L   + + 
Sbjct: 614 IVIRAMFKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKS 673

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK 531
              P  +I   +  M    G   KA   L  ++ K
Sbjct: 674 SCTPDSRILNEIIRMLLNKGEVAKAGNYLSKIDKK 708



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 34/162 (20%), Positives = 67/162 (41%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E     ++  Y+ ++    + NC ++A  +L+K+    +  DI+T  +++    K G   
Sbjct: 567 ESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQ 626

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            AKE F ++ ++G  P    Y  MI   +     +   +L   M  S       I   ++
Sbjct: 627 EAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDSRILNEII 686

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAG 411
           R     G+V  AG   + +  +   P   + +LL+  +   G
Sbjct: 687 RMLLNKGEVAKAGNYLSKIDKKGILPEATTTSLLIYLFSVNG 728



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 39/221 (17%), Positives = 91/221 (41%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           + ++  Y+ L+D + K   ++DA  + + M    +    V+  +++H   +A     AKE
Sbjct: 501 EPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKE 560

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            F  +   G       Y +++              L++ + +  ++     +  ++R+  
Sbjct: 561 MFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMF 620

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           + G  + A ++   +      PT+ +  +++    +    + A + F  M +    PD R
Sbjct: 621 KVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDSR 680

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
               +I     K  + KA N L +++K G  P   T ++L+
Sbjct: 681 ILNEIIRMLLNKGEVAKAGNYLSKIDKKGILPEATTTSLLI 721


>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
          Length = 1024

 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/358 (23%), Positives = 158/358 (44%), Gaps = 2/358 (0%)

Query: 215 KELLQPSRIDWINLLDRLRE-QNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCL 273
           K  L PS + +  +++ L   ++  L  K+ E  ++    + NV  YS LI A+A E  +
Sbjct: 431 KRNLVPSAVSYGAMINGLCHCKDLSLANKLLE-KMTFSGLKPNVVVYSILIMAYASEGRI 489

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           E+A R+L  M+ +G+ PDI     ++   SKAG ++ A      ++  G +PD   + + 
Sbjct: 490 EEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAF 549

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           I+ Y   G+        D M+  G+  +  +Y  L+    + G++  A  I   +     
Sbjct: 550 ILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGV 609

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
            P +++C+  +    + G   +A   F  +   G  PD    +S+I+ + K+  ++KA  
Sbjct: 610 LPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFE 669

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
           L  E+   G  P    Y  LVD L +   I  A +L   + E G  P      ++ D Y 
Sbjct: 670 LHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYC 729

Query: 514 RAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAAS 571
           ++    +A      + +K  Q     +  +++G    G ++ A  +   M  +GFA +
Sbjct: 730 KSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATT 787



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 141/320 (44%)

Query: 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320
           S LID   +E  +++  RI   M   GI  +++T  VL+H   K G +++A E  + + +
Sbjct: 337 SALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVT 396

Query: 321 HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRG 380
            G +P+ + +  +I  Y         + L+D M    +  S   Y A++     C D+  
Sbjct: 397 LGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSL 456

Query: 381 AGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIA 440
           A ++   M     +P +   ++L+ AY   G  ++AR   D M   G  PD  C  ++I+
Sbjct: 457 ANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIIS 516

Query: 441 AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
              K   +++A   LLE++  G +P   T+   +    +   + EA +   ++ + G  P
Sbjct: 517 CLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMP 576

Query: 501 PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVH 560
              +   L + + +AG   +AL     L A             I+GLL  G +Q+A +V 
Sbjct: 577 NNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVF 636

Query: 561 GLMEAQGFAASERLKVALIS 580
             ++ +G         +LIS
Sbjct: 637 SELKEKGLVPDVFTYSSLIS 656



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 156/342 (45%), Gaps = 7/342 (2%)

Query: 228 LLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENG 287
           L D L+    +L++KV   +L +     +V  Y+ L+ A  K   L  A+R+L +M+E G
Sbjct: 200 LKDLLKCGMMELFWKVYNGML-DAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDEKG 258

Query: 288 IVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGM 347
           + P+    ++++    + G++D A E   S+   G  P+   Y  +      A +     
Sbjct: 259 LNPNEFIYSLVIEGMCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAK 318

Query: 348 SLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAY 407
              + M  +G++       AL+  F + GD+    +I ++M        L +  +L+   
Sbjct: 319 LTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGL 378

Query: 408 GQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGP 467
            + G  ++A      M+ LG KP+ R    +I  Y +++ + +AL LL E+EK    P  
Sbjct: 379 CKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSA 438

Query: 468 ATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGF 527
            +Y  +++ L   + ++ A +LL K++  G  P   +   L   YA  G  ++A + L  
Sbjct: 439 VSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDG 498

Query: 528 LEAKKEQMGPDDF--ERIINGLLAGGFLQDAQRVHGLMEAQG 567
           +      + PD F    II+ L   G +++A     L+E QG
Sbjct: 499 MSC--SGVAPDIFCYNAIISCLSKAGKMEEASTY--LLEIQG 536



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 143/337 (42%), Gaps = 4/337 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E+    N   YS +I+   +   +++A  + + M E G+VP+  T T++     +A  
Sbjct: 254 MDEKGLNPNEFIYSLVIEGMCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKR 313

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           ++ AK  FE ++  G +PD    +++I  ++  G     + + D+M++ GI  +   Y  
Sbjct: 314 MNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNV 373

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    + G +  A +I   M     +P   +  LL+E Y +  +  +A    D M +  
Sbjct: 374 LIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRN 433

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P      +MI        L  A  LL ++   G +P    Y++L+        I EA 
Sbjct: 434 LVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEAR 493

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIIN 545
           +LL  +S  G AP      ++    ++AG  ++A   L  LE +   + PD   F   I 
Sbjct: 494 RLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYL--LEIQGRGLKPDAVTFGAFIL 551

Query: 546 GLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQ 582
           G    G + +A +    M   G   +  L   LI+  
Sbjct: 552 GYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGH 588



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 71/315 (22%), Positives = 140/315 (44%), Gaps = 4/315 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N R +  LI+ + +E+ +  A  +L +M +  +VP  V+   +++      +L  A +  
Sbjct: 402 NSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLL 461

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E +   G +P+  VY+ +IMAY + G+ +    L+D M  SG+      Y A++   ++ 
Sbjct: 462 EKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKA 521

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A      ++    +P   +    +  Y + G   +A   FD M+  G  P++   
Sbjct: 522 GKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLY 581

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +I  + K   L +AL++   L   G  P   T +  +  L +   + EA ++  ++ E
Sbjct: 582 TVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKE 641

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF--ERIINGLLAGGFL 553
            G  P      SL   + + G  +KA +     E   + + P+ F    +++GL   G +
Sbjct: 642 KGLVPDVFTYSSLISGFCKQGEVEKAFELHD--EMCLKGIAPNIFIYNALVDGLCKSGDI 699

Query: 554 QDAQRVHGLMEAQGF 568
           Q A+++   M  +G 
Sbjct: 700 QRARKLFDGMPEKGL 714



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 112/253 (44%), Gaps = 1/253 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L E+    +V  YS LI    K+  +E A  +  +M   GI P+I     LV    K+G+
Sbjct: 639 LKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGD 698

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           + RA++ F+ +   G +PD   Y++MI  Y  +       SL   M + G++    +Y A
Sbjct: 699 IQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNA 758

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    + GD+  A  +   M  + F  TL S   L++ Y ++    +A   F  MI   
Sbjct: 759 LVHGCCKEGDMEKAMNLFREMLQKGFATTL-SFNTLIDGYCKSCKIQEASQLFQEMIAKQ 817

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD     ++I  + K   +++A  L  E+++        TYT L+    +L   +E  
Sbjct: 818 IMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVF 877

Query: 488 QLLGKISELGEAP 500
            L  K+   G  P
Sbjct: 878 ALFEKMVAKGVKP 890



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 85/172 (49%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +ID H K   +E+A  + K+M E  ++ D VT T L++ Y+K G        FE + 
Sbjct: 825 YTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMV 884

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G +PD+  Y  +I A+           L D ++  G+     I+  L+ +  +  D+ 
Sbjct: 885 AKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLT 944

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
            A ++ + M     +P+L +C  LV ++ +AG  D+A   F+ +  LG  PD
Sbjct: 945 EASKLLDEMGELGLKPSLAACNTLVRSFHEAGKMDEATRVFEGVKSLGLVPD 996



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 62/311 (19%), Positives = 130/311 (41%), Gaps = 3/311 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           +  LID++ +   L++A  +      + I+  ++    L+    K G ++   + +  + 
Sbjct: 161 FDILIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSLLKDLLKCGMMELFWKVYNGML 220

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
                 D   Y  ++ A    G  +    ++  M   G+  +E IY  ++    Q GD+ 
Sbjct: 221 DAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQVGDID 280

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++   M  +   P   + T++     +A   ++A+  F+ M + G KPD    +++I
Sbjct: 281 EAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALI 340

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             + ++  +D+ L +   +   G      TY VL+  L +   + +A ++L  +  LG  
Sbjct: 341 DGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCK 400

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P  +    L + Y R     +AL+ L  +E +        +  +INGL      +D    
Sbjct: 401 PNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCH---CKDLSLA 457

Query: 560 HGLMEAQGFAA 570
           + L+E   F+ 
Sbjct: 458 NKLLEKMTFSG 468



 Score = 46.6 bits (109), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 38/77 (49%)

Query: 263  LIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG 322
            LI A  K   L +A ++L +M E G+ P +     LV  + +AG +D A   FE ++S G
Sbjct: 933  LITALCKREDLTEASKLLDEMGELGLKPSLAACNTLVRSFHEAGKMDEATRVFEGVKSLG 992

Query: 323  FQPDKKVYNSMIMAYVN 339
              PD      ++   +N
Sbjct: 993  LVPDTTTLIDLVNGNLN 1009


>gi|356556194|ref|XP_003546411.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Glycine max]
          Length = 829

 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 145/352 (41%), Gaps = 35/352 (9%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ ++    K++  ED  ++L +M  NG  P+  T   ++ + S+ G  +   +  
Sbjct: 425 NVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVL 484

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +++ GF+PDK  +N++I AY   G       +   M+ SG       Y ALL + A+ 
Sbjct: 485 REMKNCGFEPDKDTFNTLISAYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLNALARR 544

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGD----------------------- 412
           GD + A  +   MR + F+P   S +LL+  Y +AG+                       
Sbjct: 545 GDWKAAESVIQDMRTKGFKPNENSYSLLLHCYSKAGNVKGIEKVEKEIYDGHVFPSWILL 604

Query: 413 ------PDQARS------NFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
                   + R        FD + + G+KPD     SM++ + +  +  KA  +L  + +
Sbjct: 605 RTLVLTNHKCRHLRGMERAFDQLQKYGYKPDLVVINSMLSMFARNKMFSKAREMLHFIHE 664

Query: 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKK 520
            G +P   TY  L+D   R     +AE++L  I   G  P      ++   + R G+ ++
Sbjct: 665 CGLQPNLFTYNCLMDLYVREGECWKAEEVLKGIQNSGPEPDVVSYNTVIKGFCRKGLMQE 724

Query: 521 ALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572
           A+  L  +  K  Q     +   ++G        +A  V   M       SE
Sbjct: 725 AIGVLSEMTTKGIQPTIVTYNTFLSGYAGMELFDEANEVIRFMIEHNCRPSE 776



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 100/422 (23%), Positives = 176/422 (41%), Gaps = 49/422 (11%)

Query: 197 KILSLEKEEDPSPLLAEWKELL----QPSRID--WINLLDRL--REQNTQLYFKVAELVL 248
           K L L    + + LL EW  L     Q  R+D   + L+ R+  RE    +  K+ +L+ 
Sbjct: 148 KALDLSGNWERALLLFEWGWLHFGSDQNLRLDNQVVELMVRILGRESQHSIASKLFDLI- 206

Query: 249 SEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN- 307
             E +  +VR Y+ ++ ++A+    + A  +  KM E G+ P +VT  V++ +Y K G  
Sbjct: 207 PVEKYSLDVRAYTTILHSYARTGKYKRAIDLFGKMKEIGLDPTLVTYNVMLDVYGKMGRS 266

Query: 308 -----------------------------------LDRAKEAFESLRSHGFQPDKKVYNS 332
                                              LD A++    L+ +G++P    YNS
Sbjct: 267 WDRILELLDEMRSKGLELDEFTCSTVISACGREGMLDEARKFLAELKFNGYKPGTVTYNS 326

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           M+  +  AG     +S++  M  +        Y  L  ++ + G +     + + M  + 
Sbjct: 327 MLQVFGKAGIYTEALSILKEMEDNNCPPDSVTYNELAATYVRAGFLDEGMAVIDTMTSKG 386

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P   + T +++AYG+AG  D A   F  M  LG  P+     S++A  GKK+  +  +
Sbjct: 387 VMPNAITYTTVIDAYGKAGREDDALRLFSLMKDLGCAPNVYTYNSVLAMLGKKSRTEDVI 446

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
            +L E++ +G  P  AT+  ++         N   ++L ++   G  P      +L   Y
Sbjct: 447 KVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISAY 506

Query: 513 ARAGIEKKALQALGFLEAKKEQMGP--DDFERIINGLLAGGFLQDAQRVHGLMEAQGFAA 570
           AR G E  + +  G  E  K    P    +  ++N L   G  + A+ V   M  +GF  
Sbjct: 507 ARCGSEVDSAKMYG--EMVKSGFTPCVTTYNALLNALARRGDWKAAESVIQDMRTKGFKP 564

Query: 571 SE 572
           +E
Sbjct: 565 NE 566



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/373 (20%), Positives = 150/373 (40%), Gaps = 41/373 (10%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
            ++ +    N   Y+ +IDA+ K    +DA R+   M + G  P++ T   ++ M  K  
Sbjct: 381 TMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSLMKDLGCAPNVYTYNSVLAMLGKKS 440

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
             +   +    ++ +G  P++  +N+M+      G+      ++  M   G E  ++ + 
Sbjct: 441 RTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFN 500

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+ ++A+CG    + ++   M    F P + +   L+ A  + GD   A S    M   
Sbjct: 501 TLISAYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLNALARRGDWKAAESVIQDMRTK 560

Query: 427 GHKPDDRCTASMIAAYGK-----------KNLLDKAL--------NLLL----------- 456
           G KP++   + ++  Y K           K + D  +         L+L           
Sbjct: 561 GFKPNENSYSLLLHCYSKAGNVKGIEKVEKEIYDGHVFPSWILLRTLVLTNHKCRHLRGM 620

Query: 457 -----ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
                +L+K G++P       ++    R ++ ++A ++L  I E G  P       L D+
Sbjct: 621 ERAFDQLQKYGYKPDLVVINSMLSMFARNKMFSKAREMLHFIHECGLQPNLFTYNCLMDL 680

Query: 512 YARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAAS 571
           Y R G   KA + L  ++    +     +  +I G    G +Q+A  V   M  +G    
Sbjct: 681 YVREGECWKAEEVLKGIQNSGPEPDVVSYNTVIKGFCRKGLMQEAIGVLSEMTTKG---- 736

Query: 572 ERLKVALISSQTF 584
             ++  +++  TF
Sbjct: 737 --IQPTIVTYNTF 747



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 79/368 (21%), Positives = 153/368 (41%), Gaps = 41/368 (11%)

Query: 203 KEEDPSPLLAEWK-ELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYS 261
           + ED   +L E K     P+R  W  +L    E+    Y       +    F+ +   ++
Sbjct: 441 RTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFN 500

Query: 262 KLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSH 321
            LI A+A+     D+ ++  +M ++G  P + T   L++  ++ G+   A+   + +R+ 
Sbjct: 501 TLISAYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLNALARRGDWKAAESVIQDMRTK 560

Query: 322 GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL-ALLRSFAQCGDVRG 380
           GF+P++  Y+ ++  Y  AG  K G+  V+  I  G      I L  L+ +  +C  +RG
Sbjct: 561 GFKPNENSYSLLLHCYSKAGNVK-GIEKVEKEIYDGHVFPSWILLRTLVLTNHKCRHLRG 619

Query: 381 -----------------------------------AGQITNIMRIEEFQPTLESCTLLVE 405
                                              A ++ + +     QP L +   L++
Sbjct: 620 MERAFDQLQKYGYKPDLVVINSMLSMFARNKMFSKAREMLHFIHECGLQPNLFTYNCLMD 679

Query: 406 AYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
            Y + G+  +A      +   G +PD     ++I  + +K L+ +A+ +L E+   G +P
Sbjct: 680 LYVREGECWKAEEVLKGIQNSGPEPDVVSYNTVIKGFCRKGLMQEAIGVLSEMTTKGIQP 739

Query: 466 GPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
              TY   +     ++L +EA +++  + E    P       L D Y +AG   K  +A+
Sbjct: 740 TIVTYNTFLSGYAGMELFDEANEVIRFMIEHNCRPSELTYKILVDGYCKAG---KYEEAM 796

Query: 526 GFLEAKKE 533
            F+   KE
Sbjct: 797 DFVSKIKE 804



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 107/269 (39%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L    ++     Y+ ++    K     +A  ILK+M +N   PD VT   L   Y +AG 
Sbjct: 312 LKFNGYKPGTVTYNSMLQVFGKAGIYTEALSILKEMEDNNCPPDSVTYNELAATYVRAGF 371

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           LD      +++ S G  P+   Y ++I AY  AG+    + L  +M   G   +   Y +
Sbjct: 372 LDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSLMKDLGCAPNVYTYNS 431

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           +L    +        ++   M++    P   +   ++    + G  +        M   G
Sbjct: 432 VLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCG 491

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            +PD     ++I+AY +      +  +  E+ K GF P   TY  L++ L R      AE
Sbjct: 492 FEPDKDTFNTLISAYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLNALARRGDWKAAE 551

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAG 516
            ++  +   G  P       L   Y++AG
Sbjct: 552 SVIQDMRTKGFKPNENSYSLLLHCYSKAG 580



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/259 (21%), Positives = 115/259 (44%), Gaps = 3/259 (1%)

Query: 241 FKVAELVLSE---ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTV 297
           +K AE V+ +   + F+ N   YS L+  ++K   ++  E++ K++ +  + P  +    
Sbjct: 547 WKAAESVIQDMRTKGFKPNENSYSLLLHCYSKAGNVKGIEKVEKEIYDGHVFPSWILLRT 606

Query: 298 LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG 357
           LV    K  +L   + AF+ L+ +G++PD  V NSM+  +           ++  +   G
Sbjct: 607 LVLTNHKCRHLRGMERAFDQLQKYGYKPDLVVINSMLSMFARNKMFSKAREMLHFIHECG 666

Query: 358 IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
           ++ +   Y  L+  + + G+   A ++   ++    +P + S   +++ + + G   +A 
Sbjct: 667 LQPNLFTYNCLMDLYVREGECWKAEEVLKGIQNSGPEPDVVSYNTVIKGFCRKGLMQEAI 726

Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
                M   G +P      + ++ Y    L D+A  ++  + +    P   TY +LVD  
Sbjct: 727 GVLSEMTTKGIQPTIVTYNTFLSGYAGMELFDEANEVIRFMIEHNCRPSELTYKILVDGY 786

Query: 478 GRLQLINEAEQLLGKISEL 496
            +     EA   + KI EL
Sbjct: 787 CKAGKYEEAMDFVSKIKEL 805


>gi|242071495|ref|XP_002451024.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
 gi|241936867|gb|EES10012.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
          Length = 813

 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 138/306 (45%), Gaps = 4/306 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N   Y+ +ID   KE  +  A  +  +M + GI PD+ T   +V+   KA  +D+A+   
Sbjct: 215 NAVAYNTVIDGFFKEGDVNKACDLFNEMVQRGISPDLSTYNCVVNALCKARAMDKAEAIL 274

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G  PD   YNS+I  Y + GQ K  + +   M + GI        +L+ S  + 
Sbjct: 275 RQMVDKGVLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNSLMASLCKH 334

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G ++ A  + + M ++  +  + S  +++  Y   G        F+ M+  G  PD    
Sbjct: 335 GKIKDARDVFDSMAMKGQKTDIFSYKIMLNGYATKGCLVDLTELFNLMLSDGIAPDSHIF 394

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +I AY K  +LD+A  +  E+ + G EP   TY+ ++  L R+  +++A +   ++ +
Sbjct: 395 NVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMID 454

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFL 553
            G AP       L   +   G   KA   +  L+   + M PD   F  IIN L   G +
Sbjct: 455 QGVAPSISTYHFLIQGFCTHGDLLKAKDLV--LQMMNKGMRPDIGCFNFIINNLCKLGRV 512

Query: 554 QDAQRV 559
            DAQ +
Sbjct: 513 MDAQNI 518



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 111/247 (44%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           +T++  Y  +++ +A + CL D   +   M  +GI PD     VL+  Y+K G LDRA  
Sbjct: 353 KTDIFSYKIMLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATI 412

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            F  +R  G +PD   Y+++I A    G+    +   + MI  G+  S   Y  L++ F 
Sbjct: 413 IFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFC 472

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
             GD+  A  +   M  +  +P +     ++    + G    A++ FD+ I +G  P+  
Sbjct: 473 THGDLLKAKDLVLQMMNKGMRPDIGCFNFIINNLCKLGRVMDAQNIFDFTISIGLHPNVM 532

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
              +++  Y     ++ AL +   +   G +P    Y  LV+   ++  I+E   L  +I
Sbjct: 533 VYNTLMDGYCLVGKMENALRVFDVMVSAGIQPNVVVYGTLVNGYCKVGRIDEGLSLFREI 592

Query: 494 SELGEAP 500
              G  P
Sbjct: 593 LHKGIKP 599



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 80/380 (21%), Positives = 160/380 (42%), Gaps = 41/380 (10%)

Query: 210 LLAEWKELLQPSRIDWINLLD-RLREQNTQLYFKVAELV--LSEESFQTNVRDYSKLIDA 266
           ++AE   +  P+ + +  ++D   +E +     K  +L   + +     ++  Y+ +++A
Sbjct: 204 MMAEGGAVCLPNAVAYNTVIDGFFKEGDVN---KACDLFNEMVQRGISPDLSTYNCVVNA 260

Query: 267 HAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPD 326
             K   ++ AE IL++M + G++PD  T   L++ YS  G    A    + + S G  PD
Sbjct: 261 LCKARAMDKAEAILRQMVDKGVLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPD 320

Query: 327 KKVYNSMIMAYVNAGQPK--------LGMS---------------------------LVD 351
               NS++ +    G+ K        + M                            L +
Sbjct: 321 VVTLNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGYATKGCLVDLTELFN 380

Query: 352 MMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAG 411
           +M++ GI     I+  L++++A+CG +  A  I N MR +  +P + + + ++ A  + G
Sbjct: 381 LMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIG 440

Query: 412 DPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYT 471
             D A   F+ MI  G  P       +I  +     L KA +L+L++   G  P    + 
Sbjct: 441 KMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRPDIGCFN 500

Query: 472 VLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK 531
            +++ L +L  + +A+ +      +G  P   +  +L D Y   G  + AL+    + + 
Sbjct: 501 FIINNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKMENALRVFDVMVSA 560

Query: 532 KEQMGPDDFERIINGLLAGG 551
             Q     +  ++NG    G
Sbjct: 561 GIQPNVVVYGTLVNGYCKVG 580



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 95/218 (43%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++ LI A+AK   L+ A  I  +M E G+ PD+VT + ++    + G +D A E F  + 
Sbjct: 394 FNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMI 453

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P    Y+ +I  +   G       LV  M+  G+      +  ++ +  + G V 
Sbjct: 454 DQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRPDIGCFNFIINNLCKLGRVM 513

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  I +        P +     L++ Y   G  + A   FD M+  G +P+     +++
Sbjct: 514 DAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKMENALRVFDVMVSAGIQPNVVVYGTLV 573

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
             Y K   +D+ L+L  E+   G +P    Y +++  L
Sbjct: 574 NGYCKVGRIDEGLSLFREILHKGIKPSTTLYNIILHGL 611



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/263 (21%), Positives = 113/263 (42%), Gaps = 2/263 (0%)

Query: 241 FKVAELVLS--EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVL 298
            K  +LVL    +  + ++  ++ +I+   K   + DA+ I       G+ P+++    L
Sbjct: 478 LKAKDLVLQMMNKGMRPDIGCFNFIINNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTL 537

Query: 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
           +  Y   G ++ A   F+ + S G QP+  VY +++  Y   G+   G+SL   ++  GI
Sbjct: 538 MDGYCLVGKMENALRVFDVMVSAGIQPNVVVYGTLVNGYCKVGRIDEGLSLFREILHKGI 597

Query: 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418
           + S  +Y  +L    Q G    A    + M          + ++++    +    D+A  
Sbjct: 598 KPSTTLYNIILHGLFQAGRTVPAKVKFHEMTESGIAMDRYTYSIVLGGLFKNSCSDEAIL 657

Query: 419 NFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLG 478
            F  +  +  K D      MIA   +   +++A +L   + + G  P   TY++++  L 
Sbjct: 658 LFKELHAMNVKIDITTLNIMIAGMFQIRRVEEAKDLFASISRSGLVPSVVTYSIMMTNLI 717

Query: 479 RLQLINEAEQLLGKISELGEAPP 501
           +  L+ EA+ +   +   G   P
Sbjct: 718 KEGLVEEADDMFSSMENAGCEQP 740



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 91/222 (40%), Gaps = 8/222 (3%)

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRI-----EEFQPTLESCTLLVEAYGQAGDPDQARSN 419
           Y  +L+S   C D R +GQ   ++R+         P   +   +++ + + GD ++A   
Sbjct: 182 YCIVLKSL--CSD-RKSGQADELLRMMAEGGAVCLPNAVAYNTVIDGFFKEGDVNKACDL 238

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
           F+ M++ G  PD      ++ A  K   +DKA  +L ++   G  P   TY  L+     
Sbjct: 239 FNEMVQRGISPDLSTYNCVVNALCKARAMDKAEAILRQMVDKGVLPDNWTYNSLIYGYSS 298

Query: 480 LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD 539
                EA ++  K++  G  P      SL     + G  K A      +  K ++     
Sbjct: 299 TGQWKEAVRVSKKMTSQGILPDVVTLNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIFS 358

Query: 540 FERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
           ++ ++NG    G L D   +  LM + G A    +   LI +
Sbjct: 359 YKIMLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKA 400


>gi|302784330|ref|XP_002973937.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
 gi|300158269|gb|EFJ24892.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
          Length = 823

 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/375 (22%), Positives = 158/375 (42%), Gaps = 42/375 (11%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  Y+ LID + +   L+D  ++ K M E    PD+VT   L+  +   G L      F
Sbjct: 423 NIVTYNILIDIYGRMEKLDDMMKVFKFMQEKNCTPDLVTWNSLLKSFGNCGMLTEVSNVF 482

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA-- 373
             ++  G+ P    +N +I  Y   G     + +   ++ +G++ +   + AL+ S A  
Sbjct: 483 REMKRAGYMPGVDTFNILIECYGRCGYVDYSVDIYKGLLRTGLQPTVPTFAALMASLARE 542

Query: 374 ----QC--------------GDVRGAGQITN------IMRIEEFQPTLES---------- 399
               QC               D   AG I +        ++ ++   LE           
Sbjct: 543 GRWQQCEKVSQEMAEAGLQLSDACHAGLIHSYANSGQFFQLRKYIDELEKSAKQPLSGIL 602

Query: 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELE 459
           C   V AY + G  ++A+   + +   GH PD +   +MI+   K+  +++A+ LL E+ 
Sbjct: 603 CKTFVLAYCKCGMDNEAQLALNQLYDNGHSPDIKVFNAMISMCAKRGWIERAVKLLEEIR 662

Query: 460 KDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEK 519
           K   +P   TY  L+   GR  +  +AE+++ ++   G+AP      +L   Y + G   
Sbjct: 663 KAQLKPDGVTYNCLMSMYGREGMYYKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMD 722

Query: 520 KALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVA 577
            A +  G + A + +  PD+  F  ++    + G  ++A  V   M   G   ++    A
Sbjct: 723 DAARVFGDMVAARVR--PDNFTFNTLVGSYSSLGLYKEALSVIEYMTEHGCQPTQITFKA 780

Query: 578 LISSQTFNRQRQPTR 592
           L+    +NR   P+R
Sbjct: 781 LLDG--YNRNASPSR 793



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 115/257 (44%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +I A  + +  ++A R+ ++M E G  P+ VT   L+ +Y K G    A E    + 
Sbjct: 287 YNTMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNALLDVYGKGGMHKEASELLVEME 346

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G  P+   YN +I AY  AG      +L   +++ G+   E  Y  L+ +F +     
Sbjct: 347 AAGISPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLCPDEFTYCTLISAFNRAERYE 406

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A +    MR     P + +  +L++ YG+    D     F +M      PD     S++
Sbjct: 407 KALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFMQEKNCTPDLVTWNSLL 466

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            ++G   +L +  N+  E+++ G+ PG  T+ +L++  GR   ++ +  +   +   G  
Sbjct: 467 KSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGYVDYSVDIYKGLLRTGLQ 526

Query: 500 PPFKIQVSLCDMYARAG 516
           P      +L    AR G
Sbjct: 527 PTVPTFAALMASLAREG 543



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/333 (21%), Positives = 144/333 (43%), Gaps = 1/333 (0%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN-L 308
           +ES+  +V  Y+ LI   ++    ++   + + M   G   + VT  V++ +Y K G+  
Sbjct: 206 DESYSLDVYAYTSLISILSRARRFDEGITLFETMQREGQRGNAVTYNVMLDLYGKRGDSW 265

Query: 309 DRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLAL 368
           DR +  F+ ++     PD   YN+MI A +     +  + L   M  +G   +   Y AL
Sbjct: 266 DRIQSLFQEMKDLEISPDDYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNAL 325

Query: 369 LRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH 428
           L  + + G  + A ++   M      P + +   L+ AY +AG  D+A +    ++  G 
Sbjct: 326 LDVYGKGGMHKEASELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGL 385

Query: 429 KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQ 488
            PD+    ++I+A+ +    +KAL    E+ K    P   TY +L+D  GR++ +++  +
Sbjct: 386 CPDEFTYCTLISAFNRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMK 445

Query: 489 LLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLL 548
           +   + E    P      SL   +   G+  +       ++      G D F  +I    
Sbjct: 446 VFKFMQEKNCTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYG 505

Query: 549 AGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
             G++  +  ++  +   G   +     AL++S
Sbjct: 506 RCGYVDYSVDIYKGLLRTGLQPTVPTFAALMAS 538



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 124/281 (44%), Gaps = 5/281 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  LI A  +    E A     +M +    P+IVT  +L+ +Y +   LD   + F+ ++
Sbjct: 392 YCTLISAFNRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFMQ 451

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
                PD   +NS++ ++ N G      ++   M  +G     + +  L+  + +CG V 
Sbjct: 452 EKNCTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGYVD 511

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            +  I   +     QPT+ +   L+ +  + G   Q       M   G +  D C A +I
Sbjct: 512 YSVDIYKGLLRTGLQPTVPTFAALMASLAREGRWQQCEKVSQEMAEAGLQLSDACHAGLI 571

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEP--GPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
            +Y       +    + ELEK   +P  G    T ++ +  +  + NEA+  L ++ + G
Sbjct: 572 HSYANSGQFFQLRKYIDELEKSAKQPLSGILCKTFVLAYC-KCGMDNEAQLALNQLYDNG 630

Query: 498 EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
            +P  K+  ++  M A+ G  ++A++ L   E +K Q+ PD
Sbjct: 631 HSPDIKVFNAMISMCAKRGWIERAVKLLE--EIRKAQLKPD 669



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/174 (21%), Positives = 79/174 (45%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L +     +++ ++ +I   AK   +E A ++L+++ +  + PD VT   L+ MY + G 
Sbjct: 626 LYDNGHSPDIKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGM 685

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
             +A+E    +R  G  P+   YN+++ +Y   G+      +   M+ + +      +  
Sbjct: 686 YYKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNFTFNT 745

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421
           L+ S++  G  + A  +   M     QPT  +   L++ Y +   P + +   D
Sbjct: 746 LVGSYSSLGLYKEALSVIEYMTEHGCQPTQITFKALLDGYNRNASPSRKKPGGD 799



 Score = 46.2 bits (108), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 83/197 (42%), Gaps = 3/197 (1%)

Query: 391 EEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKK-NLLD 449
           E +   + + T L+    +A   D+  + F+ M R G + +      M+  YGK+ +  D
Sbjct: 207 ESYSLDVYAYTSLISILSRARRFDEGITLFETMQREGQRGNAVTYNVMLDLYGKRGDSWD 266

Query: 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLC 509
           +  +L  E++     P   TY  ++    +     EA +L  ++ E G  P      +L 
Sbjct: 267 RIQSLFQEMKDLEISPDDYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNALL 326

Query: 510 DMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
           D+Y + G+ K+A + L  +EA         +  +I      G   +A  +   + ++G  
Sbjct: 327 DVYGKGGMHKEASELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLC 386

Query: 570 ASERLKVALISSQTFNR 586
             E     LIS+  FNR
Sbjct: 387 PDEFTYCTLISA--FNR 401


>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
 gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
          Length = 603

 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 129/303 (42%), Gaps = 5/303 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  LID  AK   L +A ++ ++M ++GI P  VT  V++H    A  LD A E F+S+R
Sbjct: 188 YGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMR 247

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           S G +P +  +N +I A+   G+      L+  M   G       Y  L+        V 
Sbjct: 248 SKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVD 307

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  +   M   + +PT+ +   L+    +AG   +AR   D M+  G  PD     +++
Sbjct: 308 DARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLV 367

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             + +    ++A  LL ++   G  P   TYT LV  L +   + EA  +  ++   G A
Sbjct: 368 HGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCA 427

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P      +L   +  AG     L+  G  E     + PD    ++ G LA    +  +  
Sbjct: 428 PNLFTYTALILGFCSAGQVDGGLKLFG--EMVCAGISPD---HVVYGTLAAELCKSGRSA 482

Query: 560 HGL 562
             L
Sbjct: 483 RAL 485



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 84/365 (23%), Positives = 159/365 (43%), Gaps = 4/365 (1%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELV--LSEESFQTNVRDYSKLIDAHAKENCLED 275
           + PS + + +L+  L   N+  +    EL   ++      +   Y+ +IDA  K   LE+
Sbjct: 41  VTPSTVAYTSLIHGLCMANS--FDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEE 98

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A  ++KKM E+G VPD+VT   ++    K+G ++ A   F  +   G  P+++ +N++I+
Sbjct: 99  ACDLIKKMIEDGHVPDVVTYNTVMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIIL 158

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
                 +      +   M    I      Y  L+   A+ G +  A ++   M      P
Sbjct: 159 GLCQQSKIDQACQVFHEMEARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITP 218

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
           +  +  +++     A   D+A   F  M   G +P       +I A+ K+  +D+A  LL
Sbjct: 219 SAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLL 278

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
             +  DG  P   TY+ L+  L  +  +++A  LL  + +    P    Q +L     +A
Sbjct: 279 KRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKA 338

Query: 516 GIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLK 575
           G  K+A + L  + +  +      +  +++G    G  + A+ +   M A+G A +    
Sbjct: 339 GRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTY 398

Query: 576 VALIS 580
            AL+S
Sbjct: 399 TALVS 403



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 97/233 (41%), Gaps = 35/233 (15%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVT------------------------- 294
           ++ LIDAH K   +++A R+LK+M ++G VPD+VT                         
Sbjct: 258 FNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMV 317

Query: 295 ----------STVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPK 344
                        L+H   KAG +  A+E  +++ S G  PD   YN+++  +  AGQ +
Sbjct: 318 KRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTE 377

Query: 345 LGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
               L+  M+  G+  +   Y AL+    +   +  A  +   M+     P L + T L+
Sbjct: 378 RARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALI 437

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
             +  AG  D     F  M+  G  PD     ++ A   K     +AL +L E
Sbjct: 438 LGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILRE 490



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 121/313 (38%), Gaps = 2/313 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           ++E +   +   Y  LID  AK   L DA  + +K+  +G+ P  V  T L+H    A +
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            D A+E F  +   G  P    YN +I A    G  +    L+  MI  G       Y  
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++    + G V  A  + N M      P   S   ++    Q    DQA   F  M    
Sbjct: 121 VMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARD 180

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD      +I    K   L++A  L   +   G  P   TY V++  +     ++EA 
Sbjct: 181 IPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEAL 240

Query: 488 QLLGKISELGEAPP-FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
           +L   +   G  P  F   + L D + + G   +A + L  +           +  +I+G
Sbjct: 241 ELFKSMRSKGCRPSRFTFNI-LIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISG 299

Query: 547 LLAGGFLQDAQRV 559
           L +   + DA+ +
Sbjct: 300 LCSIARVDDARHL 312


>gi|359472741|ref|XP_003631192.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Vitis vinifera]
          Length = 708

 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 140/320 (43%), Gaps = 5/320 (1%)

Query: 214 WKELLQPSRIDWINLLDRLREQN-TQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC 272
           WK    P+      L+D L ++  T+  F++   ++  + ++ NV  Y+ +I+ + KE+ 
Sbjct: 325 WK----PNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDK 380

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           L  AE +L +M E G+VP+  T T L+  + K GN  RA E  + +   GF P+   YN+
Sbjct: 381 LNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNA 440

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I      G       L++ +   G++     Y  L+    +  D   +    N M    
Sbjct: 441 IIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVG 500

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
           F P + S T L+  + +     ++   F+  + LG  P  +   SMI  Y +      A+
Sbjct: 501 FTPDIHSYTTLISTFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYCRYGNTSLAV 560

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
            L   +   G  P   TY  L+  L +   +++A  L   + + G +P    +++L   Y
Sbjct: 561 KLFQRMSNHGCAPDSITYGALISGLCKESKLDDARNLYDAMMDKGLSPCEVTRLTLAYEY 620

Query: 513 ARAGIEKKALQALGFLEAKK 532
            +      A+  L  LE ++
Sbjct: 621 CKKDDSSTAINVLDRLEKRQ 640



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 149/334 (44%), Gaps = 5/334 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E     NV +++ LI+   K+  ++ A  +L++M   G  P++ T T L+    K G 
Sbjct: 285 MVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGW 344

Query: 308 LDRAKEAFESL-RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            ++A   F  L RS G++P+   Y +MI  Y    +      L+  M   G+  +   Y 
Sbjct: 345 TEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYT 404

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+    + G+   A ++ ++M  E F P + +   +++   + G  D+A    + +   
Sbjct: 405 TLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVH 464

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G + D      +++ + ++   +++L    ++ K GF P   +YT L+    R + + E+
Sbjct: 465 GLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISTFCRQKQMKES 524

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERII 544
           E+L  +   LG  P  K   S+   Y R G    A++   F         PD   +  +I
Sbjct: 525 ERLFEEAVSLGLIPTKKTYTSMICGYCRYGNTSLAVKL--FQRMSNHGCAPDSITYGALI 582

Query: 545 NGLLAGGFLQDAQRVHGLMEAQGFAASERLKVAL 578
           +GL     L DA+ ++  M  +G +  E  ++ L
Sbjct: 583 SGLCKESKLDDARNLYDAMMDKGLSPCEVTRLTL 616



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 141/324 (43%), Gaps = 9/324 (2%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           L++A  ++ +M   G+VP   T   ++ +    G ++ A+  F  +   G  PD   +  
Sbjct: 170 LKEAVNMVVEMQNQGLVPSTQTLNCVLDVAVGMGLVEIAENMFVEMCQRGVSPDCVSFKL 229

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV-RGAGQITNIMRIE 391
           M++A  N G+       ++ M+  G          ++ +F Q G V R  G    ++ + 
Sbjct: 230 MVVACCNMGRVLEAERWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVGYFWKMVEM- 288

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
              P + + T L+    + G   QA    + M+R G KP+     ++I    KK   +KA
Sbjct: 289 GLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKA 348

Query: 452 LNLLLELEK-DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCD 510
             L L+L + DG++P   TYT +++   +   +N AE LL ++ E G  P      +L D
Sbjct: 349 FRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLID 408

Query: 511 MYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
            + + G   +A + +  +   KE   P+   +  II+GL   G L +A R+   +   G 
Sbjct: 409 GHCKVGNFVRAYELMDLM--GKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGL 466

Query: 569 AASERLKVALISSQTFNRQRQPTR 592
            A       L+S     RQ    R
Sbjct: 467 QADGVTYTILMSVHC--RQADTNR 488



 Score = 46.6 bits (109), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 49/226 (21%), Positives = 101/226 (44%), Gaps = 5/226 (2%)

Query: 358 IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
           +ER+ E+   ++ +FA+ G ++ A  +   M+ +   P+ ++   +++     G  + A 
Sbjct: 150 LERANEVMQCMVMNFAENGKLKEAVNMVVEMQNQGLVPSTQTLNCVLDVAVGMGLVEIAE 209

Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
           + F  M + G  PD      M+ A      + +A   L  + + GF    AT T+++D  
Sbjct: 210 NMFVEMCQRGVSPDCVSFKLMVVACCNMGRVLEAERWLNAMVERGFIVDNATCTLIIDAF 269

Query: 478 GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP 537
            +   +N       K+ E+G AP      +L +   + G  K+A + L   E  +    P
Sbjct: 270 CQKGYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLE--EMVRRGWKP 327

Query: 538 DDFER--IINGLLAGGFLQDAQRVH-GLMEAQGFAASERLKVALIS 580
           + +    +I+GL   G+ + A R+   L+ + G+  +     A+I+
Sbjct: 328 NVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMIN 373


>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 156/355 (43%), Gaps = 2/355 (0%)

Query: 218 LQPSRIDWINLLDRLRE-QNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L PS + +  +++ L   ++  L  K+ E  ++    + NV  YS LI  +A E  +E+A
Sbjct: 146 LVPSAVSYGAMINGLCHCKDLSLANKLLE-KMTFSGLKPNVVVYSTLIMGYASEGRIEEA 204

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
            R+L  M+ +G+ PDI     ++   SKAG ++ A      ++  G +PD   + + I+ 
Sbjct: 205 RRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILG 264

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           Y   G+        D M+  G+  +  +Y  L+    + G++  A  I   +      P 
Sbjct: 265 YSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPD 324

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           +++C+  +    + G   +A   F  +   G  PD    +S+I+ + K+  ++KA  L  
Sbjct: 325 VQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHD 384

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
           E+   G  P    Y  LVD L +   I  A +L   + E G  P      ++ D Y ++ 
Sbjct: 385 EMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSE 444

Query: 517 IEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAAS 571
              +A      + +K  Q     +  +++G    G ++ A  +   M  +GFA +
Sbjct: 445 NVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATT 499



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 150/342 (43%), Gaps = 6/342 (1%)

Query: 250 EESFQTNVR-DY---SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKA 305
           EE  +T ++ DY   S LID   +E  +++  RI   M   GI  +++T  VL+H   K 
Sbjct: 34  EEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKF 93

Query: 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
           G +++A E  + + + G +P+ + +  +I  Y         + L+D M    +  S   Y
Sbjct: 94  GKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSY 153

Query: 366 LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
            A++     C D+  A ++   M     +P +   + L+  Y   G  ++AR   D M  
Sbjct: 154 GAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSC 213

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
            G  PD  C  ++I+   K   +++A   LLE++  G +P   T+   +    +   + E
Sbjct: 214 SGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTE 273

Query: 486 AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIIN 545
           A +   ++ + G  P   +   L + + +AG   +AL     L A             I+
Sbjct: 274 AAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIH 333

Query: 546 GLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQ 587
           GLL  G +Q+A +V   ++ +G         +LIS   F +Q
Sbjct: 334 GLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISG--FCKQ 373



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 118/270 (43%), Gaps = 34/270 (12%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI+ H K   L +A  I + ++  G++PD+ T +  +H   K G +  A + F  L+
Sbjct: 293 YTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELK 352

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  PD   Y+S+I  +   G+ +    L D M   GI  +  IY AL+    + GD++
Sbjct: 353 EKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQ 412

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++ + M  +  +P   + + +++ Y ++ +  +A S F  M   G +P      +++
Sbjct: 413 RARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALV 472

Query: 440 AAYGKKNLLDKALNLLLELEKDGFE----------------------------------P 465
               K+  ++KA+NL  E+ + GF                                   P
Sbjct: 473 HGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMP 532

Query: 466 GPATYTVLVDWLGRLQLINEAEQLLGKISE 495
              TYT ++DW  +   + EA  L  ++ E
Sbjct: 533 DHVTYTTVIDWHCKAGKMEEANLLFKEMQE 562



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 70/315 (22%), Positives = 140/315 (44%), Gaps = 4/315 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N R +  LI+ + +E+ +  A  +L +M +  +VP  V+   +++      +L  A +  
Sbjct: 114 NSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLL 173

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E +   G +P+  VY+++IM Y + G+ +    L+D M  SG+      Y A++   ++ 
Sbjct: 174 EKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKA 233

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A      ++    +P   +    +  Y + G   +A   FD M+  G  P++   
Sbjct: 234 GKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLY 293

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +I  + K   L +AL++   L   G  P   T +  +  L +   + EA ++  ++ E
Sbjct: 294 TVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKE 353

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF--ERIINGLLAGGFL 553
            G  P      SL   + + G  +KA +     E   + + P+ F    +++GL   G +
Sbjct: 354 KGLVPDVFTYSSLISGFCKQGEVEKAFELHD--EMCLKGIAPNIFIYNALVDGLCKSGDI 411

Query: 554 QDAQRVHGLMEAQGF 568
           Q A+++   M  +G 
Sbjct: 412 QRARKLFDGMPEKGL 426



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 126/302 (41%), Gaps = 4/302 (1%)

Query: 283 MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
           M E G+VP+  T T++     +A  ++ AK  FE ++  G +PD    +++I  ++  G 
Sbjct: 1   MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 60

Query: 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402
               + + D+M++ GI  +   Y  L+    + G +  A +I   M     +P   +  L
Sbjct: 61  IDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCL 120

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           L+E Y +  +  +A    D M +    P      +MI        L  A  LL ++   G
Sbjct: 121 LIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSG 180

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522
            +P    Y+ L+        I EA +LL  +S  G AP      ++    ++AG  ++A 
Sbjct: 181 LKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEAS 240

Query: 523 QALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
             L  LE +   + PD   F   I G    G + +A +    M   G   +  L   LI+
Sbjct: 241 TYL--LEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLIN 298

Query: 581 SQ 582
             
Sbjct: 299 GH 300



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 150/365 (41%), Gaps = 55/365 (15%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L E+    +V  YS LI    K+  +E A  +  +M   GI P+I     LV    K+G+
Sbjct: 351 LKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGD 410

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           + RA++ F+ +   G +PD   Y++MI  Y  +       SL   M + G++    +Y A
Sbjct: 411 IQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNA 470

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTL----------ESC----------------- 400
           L+    + GD+  A  +   M  + F  TL          +SC                 
Sbjct: 471 LVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQI 530

Query: 401 -------TLLVEAYGQAGDPDQAR-----------------SNFDYMIRLGHKPDDRCTA 436
                  T +++ + +AG  ++A                  + F+ M+  G KPD+    
Sbjct: 531 MPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVFALFEKMVAKGVKPDEVTYG 590

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
            +I A+ K++ L +A  L  E+   G       + +L+  L + + + EA +LL ++ EL
Sbjct: 591 LVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGEL 650

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERI--INGLLAGGFLQ 554
           G  P      +L   +  AG   +A +   F   K   + PD    I  +NG L     +
Sbjct: 651 GLKPSLAACSTLVRSFHEAGKMDEATRV--FEGVKSLGLVPDTTTLIDLVNGNLNDTDSE 708

Query: 555 DAQRV 559
           DA+ +
Sbjct: 709 DARNL 713



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 2/123 (1%)

Query: 218 LQPSRIDW-INLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           ++P  + + + +    +E N    FK+ + V+ +    T    +  LI A  K   L +A
Sbjct: 582 VKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGK-GMLTKGTIHDLLITALCKREDLTEA 640

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
            ++L +M E G+ P +   + LV  + +AG +D A   FE ++S G  PD      ++  
Sbjct: 641 SKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLVNG 700

Query: 337 YVN 339
            +N
Sbjct: 701 NLN 703


>gi|115469638|ref|NP_001058418.1| Os06g0690900 [Oryza sativa Japonica Group]
 gi|52076717|dbj|BAD45630.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|53793285|dbj|BAD54507.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113596458|dbj|BAF20332.1| Os06g0690900 [Oryza sativa Japonica Group]
          Length = 991

 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 145/326 (44%), Gaps = 8/326 (2%)

Query: 244 AELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS 303
           A L LS + +   +R  ++        +  E   R+  ++ ++G++PD VT   ++  Y 
Sbjct: 142 ARLALSPKCYNFALRSLARF-------DMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYC 194

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363
           K G+L  A   F  L   G +P+    N++++ Y   G+ +    L  MM   G +R+E 
Sbjct: 195 KEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEY 254

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
            Y  L++       VR A  +  +M+ +   P + + T L+    ++G    AR  FD M
Sbjct: 255 SYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAM 314

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483
            + G  P      +MI  Y K   ++ AL +   +EK+G  P   TY  L+  L   Q  
Sbjct: 315 PQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCD-QKT 373

Query: 484 NEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERI 543
            EAE+LL    + G  P      +L + Y  A     AL+    + + K ++    F ++
Sbjct: 374 EEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKL 433

Query: 544 INGLLAGGFLQDAQRVHGLMEAQGFA 569
           IN L+    L++A+ +   + A G  
Sbjct: 434 INSLIKKDRLKEAKELLNEISANGLV 459



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 116/247 (46%), Gaps = 3/247 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ L+     E+  ++A R+ + M +NG+ PD     VL     KAG   RA+EA+
Sbjct: 531 NVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAG---RAEEAY 587

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G    K  Y ++I  +  AG      +L++ MI  G       Y  LL +  + 
Sbjct: 588 SFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQ 647

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
             +  A  I + M +   + T+ + T+L++   + G  D A+  ++ M   GHKP     
Sbjct: 648 KRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTY 707

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
              I +Y K+  L+ A +L+L++E++G  P   TY +L+D  G +  I+ A   L ++  
Sbjct: 708 TVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVG 767

Query: 496 LGEAPPF 502
               P +
Sbjct: 768 ASCEPNY 774



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 165/365 (45%), Gaps = 23/365 (6%)

Query: 215 KELLQPSRIDWINLL----------DRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLI 264
           KE   P+ + + NL+          D LR +N  +  K           + +++ + KLI
Sbjct: 385 KEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKC----------KLDLQVFGKLI 434

Query: 265 DAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQ 324
           ++  K++ L++A+ +L +++ NG+VP+++T T ++  Y K+G +D A E  + +   G Q
Sbjct: 435 NSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQ 494

Query: 325 PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQI 384
           P+   YNS++   V   +    M+L+  M   GI  +   Y  LL+      D   A ++
Sbjct: 495 PNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRL 554

Query: 385 TNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGK 444
             +M     +P   +  +L +A  +AG  ++A   + +++R G         ++I  + K
Sbjct: 555 FEMMEQNGLKPDEHAYAVLTDALCKAGRAEEA---YSFIVRKGVALTKVYYTTLIDGFSK 611

Query: 445 KNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKI 504
               D A  L+  +  +G  P   TY+VL+  L + + +NEA  +L ++S  G       
Sbjct: 612 AGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFA 671

Query: 505 QVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLME 564
              L D   R G    A +    + +   +     +   IN     G L+DA+ +   ME
Sbjct: 672 YTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKME 731

Query: 565 AQGFA 569
            +G A
Sbjct: 732 REGVA 736



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/343 (22%), Positives = 141/343 (41%), Gaps = 37/343 (10%)

Query: 243 VAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMY 302
           V  L++  +    NVR ++ LI    K   + DA  +   M +NG+VP ++T   ++  Y
Sbjct: 274 VLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGY 333

Query: 303 SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM--------------------------- 335
           SK G ++ A +  E +  +G  PD   YN++I                            
Sbjct: 334 SKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKTEEAEELLNNAVKEGFTPTVV 393

Query: 336 -------AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIM 388
                   Y  A +    + + + M++S  +   +++  L+ S  +   ++ A ++ N +
Sbjct: 394 TFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEI 453

Query: 389 RIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLL 448
                 P + + T +++ Y ++G  D A      M R G +P+     S++    K   L
Sbjct: 454 SANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKL 513

Query: 449 DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSL 508
            KA+ LL +++KDG  P   TYT L+         + A +L   + + G  P       L
Sbjct: 514 HKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVL 573

Query: 509 CDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGG 551
            D   +AG   +A +A  F+  K   +    +  +I+G    G
Sbjct: 574 TDALCKAG---RAEEAYSFIVRKGVALTKVYYTTLIDGFSKAG 613



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 106/279 (37%), Gaps = 51/279 (18%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           ++    + +   Y+  I+++ KE  LEDAE ++ KM   G+ PD+VT  +L+      G 
Sbjct: 695 MTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGY 754

Query: 308 LDRAKEAF---------------------------------------------------E 316
           +DRA                                                       E
Sbjct: 755 IDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLE 814

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
            +  HG  P    Y+S+I  +  AG+ +    L+D M   G+  +E+IY  L++      
Sbjct: 815 RMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTK 874

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
               A    +IM    FQP LES  LLV      GD ++ +S F  ++ LG+  D+    
Sbjct: 875 FFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWK 934

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
            +     K   +D    +L  +EK        TY ++ +
Sbjct: 935 ILNDGLLKAGYVDICFQMLSIMEKRYCCISSQTYALVTN 973



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 140/331 (42%), Gaps = 7/331 (2%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           Q N   Y+ LI       C+  A  +   M  +G  P++   T L+    K+G +  A+ 
Sbjct: 250 QRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARL 309

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            F+++  +G  P    YN+MI+ Y   G+    + + ++M  +G    +  Y  L+    
Sbjct: 310 LFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLC 369

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
                  A ++ N    E F PT+ + T L+  Y  A   D A    + M+    K D +
Sbjct: 370 D-QKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQ 428

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
               +I +  KK+ L +A  LL E+  +G  P   TYT ++D   +   ++ A ++L  +
Sbjct: 429 VFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMM 488

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFL-EAKKEQMGPD--DFERIINGLLAG 550
              G  P      SL  MY     +KK  +A+  L + +K+ + P+   +  ++ G    
Sbjct: 489 ERDGCQPNAWTYNSL--MYGLVK-DKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDE 545

Query: 551 GFLQDAQRVHGLMEAQGFAASERLKVALISS 581
               +A R+  +ME  G    E     L  +
Sbjct: 546 HDFDNAFRLFEMMEQNGLKPDEHAYAVLTDA 576



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 71/317 (22%), Positives = 129/317 (40%), Gaps = 22/317 (6%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +S    +  +  Y+ LID   +E   + A+R+  +M  +G  P   T TV ++ Y K G 
Sbjct: 660 MSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGR 719

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L+ A++    +   G  PD   YN +I    + G      S +  M+ +  E +   Y  
Sbjct: 720 LEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCL 779

Query: 368 LLR-------SFAQCGDVRG---------AGQITNIMRIEEFQPTLESCTLLVEAYGQAG 411
           LL+       ++ +  D  G           Q+   M      PT+ + + L+  + +AG
Sbjct: 780 LLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAG 839

Query: 412 DPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYT 471
             ++A    D+M   G  P++     +I         +KAL+ +  + + GF+P   +Y 
Sbjct: 840 RLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYR 899

Query: 472 VLVDWLGRLQLINEAEQLLGKISELG---EAPPFKIQVSLCDMYARAGIEKKALQALGFL 528
           +LV  L       + + L   + ELG   +   +KI   L D   +AG      Q L  +
Sbjct: 900 LLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKI---LNDGLLKAGYVDICFQMLSIM 956

Query: 529 EAKKEQMGPDDFERIIN 545
           E +   +    +  + N
Sbjct: 957 EKRYCCISSQTYALVTN 973



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/297 (19%), Positives = 119/297 (40%), Gaps = 26/297 (8%)

Query: 311 AKEAFESLRSHG---FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           + +A +++R  G        K YN  + +       +    +   ++  G+      Y  
Sbjct: 129 SADAIQAIRRTGSARLALSPKCYNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNT 188

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           +++S+ + GD+  A +   ++     +P   +C  LV  Y + G+  +A   F  M  +G
Sbjct: 189 MIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMG 248

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            + ++     +I        + KAL L L +++DG  P    +T L+  L +   + +A 
Sbjct: 249 CQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDAR 308

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF------- 540
            L   + + G  P      ++   Y++ G    AL+    +E  K    PDD+       
Sbjct: 309 LLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELME--KNGCHPDDWTYNTLIY 366

Query: 541 ----------ERIINGLLAGGF----LQDAQRVHGLMEAQGFAASERLKVALISSQT 583
                     E ++N  +  GF    +     ++G   A+ F  + R+K  ++SS+ 
Sbjct: 367 GLCDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKC 423


>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Glycine max]
          Length = 852

 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 157/327 (48%), Gaps = 4/327 (1%)

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           VR  ++L+   +K +    A    K M   G+ P + T  +++   ++ G+L+ A+  FE
Sbjct: 216 VRSCNELLHRLSKSSKGGLALSFFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFE 275

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
            +++ G +PD   YNS+I  Y   G     +S+ + M  +G E     Y +L+  F +  
Sbjct: 276 EMKAKGLRPDIVTYNSLIDGYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFE 335

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
            +  A +  + M+    QP + + + L++A+ +AG   +A   F  MIR+G +P++    
Sbjct: 336 RIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYT 395

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
           S+I A  K   L++A  L  E+++ G      TYT L+D L     + EAE+L G + + 
Sbjct: 396 SLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKA 455

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQ 554
           G     +I  SL   Y +A + +KA+  L   E  K+ + PD   +   I GL     ++
Sbjct: 456 GWTLNQQIYTSLFHGYIKAKMMEKAMDILE--EMNKKNLKPDLLLYGTKIWGLCRQNEIE 513

Query: 555 DAQRVHGLMEAQGFAASERLKVALISS 581
           D+  V   M   G  A+  +   LI +
Sbjct: 514 DSMAVIREMMDCGLTANSYIYTTLIDA 540



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/324 (22%), Positives = 149/324 (45%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           ++  Y+ LID + K   L  A  + ++M + G  PD++T   L++ + K   + +A E  
Sbjct: 285 DIVTYNSLIDGYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYL 344

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             ++  G QP+   Y+++I A+  AG           MI  G++ +E  Y +L+ +  + 
Sbjct: 345 HGMKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKI 404

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           GD+  A ++ + M+       + + T L++   + G   +A   F  +++ G   + +  
Sbjct: 405 GDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIY 464

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            S+   Y K  +++KA+++L E+ K   +P    Y   +  L R   I ++  ++ ++ +
Sbjct: 465 TSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMD 524

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
            G      I  +L D Y + G   +A+  L  ++    ++    +  +I+GL   G +Q 
Sbjct: 525 CGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQ 584

Query: 556 AQRVHGLMEAQGFAASERLKVALI 579
           A R    M   G   +  +  ALI
Sbjct: 585 AVRYFDHMTRNGLQPNIMIYTALI 608



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 144/336 (42%), Gaps = 39/336 (11%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           LQP+ + +  L+D   +    L      + +     Q N   Y+ LIDA+ K   L +A 
Sbjct: 352 LQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAF 411

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
           ++  +M + G+  +IVT T L+    + G +  A+E F +L   G+  ++++Y S+   Y
Sbjct: 412 KLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGY 471

Query: 338 VNAG-----------------QPKL------------------GMSLVDMMITSGIERSE 362
           + A                  +P L                   M+++  M+  G+  + 
Sbjct: 472 IKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANS 531

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
            IY  L+ ++ + G    A  +   M+    + T+ +  +L++   + G   QA   FD+
Sbjct: 532 YIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDH 591

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
           M R G +P+     ++I    K + L++A NL  E+   G  P    YT L+D  G ++ 
Sbjct: 592 MTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLID--GNMKH 649

Query: 483 IN--EAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
            N  EA  L  ++ E+G         SL   ++R G
Sbjct: 650 GNPGEALSLRNRMVEIGMELDLCAYTSLIWGFSRYG 685



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 74/324 (22%), Positives = 140/324 (43%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ LI+   K   +  A   L  M + G+ P++VT + L+  + KAG L  A + F
Sbjct: 320 DVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFF 379

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G QP++  Y S+I A    G       L   M  +G+  +   Y ALL    + 
Sbjct: 380 VDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCED 439

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +R A ++   +    +    +  T L   Y +A   ++A    + M +   KPD    
Sbjct: 440 GRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLY 499

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            + I    ++N ++ ++ ++ E+   G       YT L+D   ++    EA  LL ++ +
Sbjct: 500 GTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQD 559

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
           LG          L D   + G+ ++A++    +     Q     +  +I+GL     L++
Sbjct: 560 LGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEE 619

Query: 556 AQRVHGLMEAQGFAASERLKVALI 579
           A+ +   M  +G +  + +  +LI
Sbjct: 620 AKNLFNEMLDKGISPDKLVYTSLI 643



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 88/196 (44%), Gaps = 8/196 (4%)

Query: 240 YFKVAELV--------LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPD 291
           YFKV +          + +   +  V  Y  LID   K   ++ A R    M  NG+ P+
Sbjct: 541 YFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPN 600

Query: 292 IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVD 351
           I+  T L+    K   L+ AK  F  +   G  PDK VY S+I   +  G P   +SL +
Sbjct: 601 IMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKHGNPGEALSLRN 660

Query: 352 MMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAG 411
            M+  G+E     Y +L+  F++ G V+ A  + + M  +   P    C  L+  Y + G
Sbjct: 661 RMVEIGMELDLCAYTSLIWGFSRYGQVQLAKSLLDEMLRKGIIPDQVLCICLLRKYYELG 720

Query: 412 DPDQARSNFDYMIRLG 427
           D ++A +  D M R G
Sbjct: 721 DINEALALHDDMARRG 736



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/300 (21%), Positives = 132/300 (44%), Gaps = 8/300 (2%)

Query: 284 NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343
             N   P       L ++    G L+ A++ F  +      P  +  N ++     + + 
Sbjct: 173 TRNVCRPGFGVFDTLFNVLVDLGMLEEARQCFWKMNKFRVLPKVRSCNELLHRLSKSSKG 232

Query: 344 KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403
            L +S    M+ +G+  S   Y  ++   A+ GD+  A  +   M+ +  +P + +   L
Sbjct: 233 GLALSFFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSL 292

Query: 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGF 463
           ++ YG+ G    A S F+ M   G +PD     S+I  + K   + +A   L  +++ G 
Sbjct: 293 IDGYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGL 352

Query: 464 EPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
           +P   TY+ L+D   +  ++ EA +    +  +G  P      SL D   + G   +A +
Sbjct: 353 QPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFK 412

Query: 524 ALGFLEAKKEQMGPD----DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
               LE++ +Q G +     +  +++GL   G +++A+ + G +   G+  ++++  +L 
Sbjct: 413 ----LESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLF 468



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/300 (20%), Positives = 126/300 (42%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           +  L +       LE+A +   KMN+  ++P + +   L+H  SK+     A   F+ + 
Sbjct: 184 FDTLFNVLVDLGMLEEARQCFWKMNKFRVLPKVRSCNELLHRLSKSSKGGLALSFFKDMV 243

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P    YN +I      G  +   SL + M   G+      Y +L+  + + G + 
Sbjct: 244 VAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGMLT 303

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
           GA  +   M+    +P + +   L+  + +     QA      M + G +P+    +++I
Sbjct: 304 GAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLI 363

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            A+ K  +L +A    +++ + G +P   TYT L+D   ++  +NEA +L  ++ + G  
Sbjct: 364 DAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVN 423

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
                  +L D     G  ++A +  G L      +    +  + +G +    ++ A  +
Sbjct: 424 LNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDI 483



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/275 (22%), Positives = 117/275 (42%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L +  +  N + Y+ L   + K   +E A  IL++MN+  + PD++     +    +   
Sbjct: 452 LLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGLCRQNE 511

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           ++ +      +   G   +  +Y ++I AY   G+    ++L+  M   GI+ +   Y  
Sbjct: 512 IEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGV 571

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    + G V+ A +  + M     QP +   T L++   +    ++A++ F+ M+  G
Sbjct: 572 LIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKG 631

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD     S+I    K     +AL+L   + + G E     YT L+    R   +  A+
Sbjct: 632 ISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVEIGMELDLCAYTSLIWGFSRYGQVQLAK 691

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522
            LL ++   G  P   + + L   Y   G   +AL
Sbjct: 692 SLLDEMLRKGIIPDQVLCICLLRKYYELGDINEAL 726



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 52/242 (21%), Positives = 105/242 (43%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +++++ + ++  Y   I    ++N +ED+  ++++M + G+  +    T L+  Y K G 
Sbjct: 487 MNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGK 546

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
              A    + ++  G +     Y  +I      G  +  +   D M  +G++ +  IY A
Sbjct: 547 TTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTA 606

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    +   +  A  + N M  +   P     T L++   + G+P +A S  + M+ +G
Sbjct: 607 LIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVEIG 666

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            + D     S+I  + +   +  A +LL E+ + G  P       L+     L  INEA 
Sbjct: 667 MELDLCAYTSLIWGFSRYGQVQLAKSLLDEMLRKGIIPDQVLCICLLRKYYELGDINEAL 726

Query: 488 QL 489
            L
Sbjct: 727 AL 728



 Score = 46.6 bits (109), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 39/189 (20%), Positives = 76/189 (40%)

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P + SC  L+    ++     A S F  M+  G  P       +I    ++  L+ A +L
Sbjct: 214 PKVRSCNELLHRLSKSSKGGLALSFFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSL 273

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
             E++  G  P   TY  L+D  G++ ++  A  +  ++ + G  P      SL + + +
Sbjct: 274 FEEMKAKGLRPDIVTYNSLIDGYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCK 333

Query: 515 AGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERL 574
                +A + L  ++ +  Q     +  +I+     G L +A +    M   G   +E  
Sbjct: 334 FERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFT 393

Query: 575 KVALISSQT 583
             +LI +  
Sbjct: 394 YTSLIDANC 402


>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 935

 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 84/358 (23%), Positives = 157/358 (43%), Gaps = 2/358 (0%)

Query: 215 KELLQPSRIDWINLLDRLRE-QNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCL 273
           K  L PS + +  +++ L   ++  L  K+ E  ++    + NV  YS LI  +A E  +
Sbjct: 342 KRNLVPSAVSYGAMINGLCHCKDLSLANKLLE-KMTFSGLKPNVVVYSTLIMGYASEGRI 400

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           E+A R+L  M+ +G+ PDI     ++   SKAG ++ A      ++  G +PD   + + 
Sbjct: 401 EEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAF 460

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           I+ Y   G+        D M+  G+  +  +Y  L+    + G++  A  I   +     
Sbjct: 461 ILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGV 520

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
            P +++C+  +    + G   +A   F  +   G  PD    +S+I+ + K+  ++KA  
Sbjct: 521 LPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFE 580

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
           L  E+   G  P    Y  LVD L +   I  A +L   + E G  P      ++ D Y 
Sbjct: 581 LHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYC 640

Query: 514 RAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAAS 571
           ++    +A      + +K  Q     +  +++G    G ++ A  +   M  +GFA +
Sbjct: 641 KSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATT 698



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 139/320 (43%)

Query: 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320
           S LID   +E  +++  RI   M   GI  +++T  VL+H   K G +++A E  + + +
Sbjct: 248 SALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMIT 307

Query: 321 HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRG 380
            G +P+ + +  +I  Y         + L+D M    +  S   Y A++     C D+  
Sbjct: 308 LGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSL 367

Query: 381 AGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIA 440
           A ++   M     +P +   + L+  Y   G  ++AR   D M   G  PD  C  ++I+
Sbjct: 368 ANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIIS 427

Query: 441 AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
              K   +++A   LLE++  G +P   T+   +    +   + EA +   ++ + G  P
Sbjct: 428 CLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMP 487

Query: 501 PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVH 560
              +   L + + +AG   +AL     L A             I+GLL  G +Q+A +V 
Sbjct: 488 NNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVF 547

Query: 561 GLMEAQGFAASERLKVALIS 580
             ++ +G         +LIS
Sbjct: 548 SELKEKGLVPDVFTYSSLIS 567



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/315 (22%), Positives = 140/315 (44%), Gaps = 4/315 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N R +  LI+ + +E+ +  A  +L +M +  +VP  V+   +++      +L  A +  
Sbjct: 313 NSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLL 372

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E +   G +P+  VY+++IM Y + G+ +    L+D M  SG+      Y A++   ++ 
Sbjct: 373 EKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKA 432

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A      ++    +P   +    +  Y + G   +A   FD M+  G  P++   
Sbjct: 433 GKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLY 492

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +I  + K   L +AL++   L   G  P   T +  +  L +   + EA ++  ++ E
Sbjct: 493 TVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKE 552

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF--ERIINGLLAGGFL 553
            G  P      SL   + + G  +KA +     E   + + P+ F    +++GL   G +
Sbjct: 553 KGLVPDVFTYSSLISGFCKQGEVEKAFELHD--EMCLKGIAPNIFIYNALVDGLCKSGDI 610

Query: 554 QDAQRVHGLMEAQGF 568
           Q A+++   M  +G 
Sbjct: 611 QRARKLFDGMPEKGL 625



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 128/305 (41%), Gaps = 4/305 (1%)

Query: 280 LKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339
           L+ M E G+VP+  T T++     +A  ++ AK  FE ++  G +PD    +++I  ++ 
Sbjct: 197 LRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMR 256

Query: 340 AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLES 399
            G     + + D+M++ GI  +   Y  L+    + G +  A +I   M     +P   +
Sbjct: 257 EGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRT 316

Query: 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELE 459
             LL+E Y +  +  +A    D M +    P      +MI        L  A  LL ++ 
Sbjct: 317 FCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMT 376

Query: 460 KDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEK 519
             G +P    Y+ L+        I EA +LL  +S  G AP      ++    ++AG  +
Sbjct: 377 FSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKME 436

Query: 520 KALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVA 577
           +A   L  LE +   + PD   F   I G    G + +A +    M   G   +  L   
Sbjct: 437 EASTYL--LEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTV 494

Query: 578 LISSQ 582
           LI+  
Sbjct: 495 LINGH 499



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 112/253 (44%), Gaps = 1/253 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L E+    +V  YS LI    K+  +E A  +  +M   GI P+I     LV    K+G+
Sbjct: 550 LKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGD 609

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           + RA++ F+ +   G +PD   Y++MI  Y  +       SL   M + G++    +Y A
Sbjct: 610 IQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNA 669

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    + GD+  A  +   M  + F  TL S   L++ Y ++    +A   F  MI   
Sbjct: 670 LVHGCCKEGDMEKAMNLFREMLQKGFATTL-SFNTLIDGYCKSCKIQEASQLFQEMIAKQ 728

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD     ++I  + K   +++A  L  E+++        TYT L+    +L   +E  
Sbjct: 729 IMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVF 788

Query: 488 QLLGKISELGEAP 500
            L  K+   G  P
Sbjct: 789 ALFEKMVAKGVKP 801



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 86/172 (50%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +ID H K   +E+A  + K+M E  ++ D VT T L++ Y+K G        FE + 
Sbjct: 736 YTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMV 795

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G +PD+  Y  +I A+           L D ++  G+     I+  L+ +  +  D+ 
Sbjct: 796 AKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLT 855

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
            A ++ + M     +P+L +C+ LV ++ +AG  D+A   F+ +  LG  PD
Sbjct: 856 EASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPD 907



 Score = 47.0 bits (110), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 39/77 (50%)

Query: 263 LIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG 322
           LI A  K   L +A ++L +M E G+ P +   + LV  + +AG +D A   FE ++S G
Sbjct: 844 LITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLG 903

Query: 323 FQPDKKVYNSMIMAYVN 339
             PD      ++   +N
Sbjct: 904 LVPDTTTLIDLVNGNLN 920


>gi|297801450|ref|XP_002868609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314445|gb|EFH44868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 526

 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 146/320 (45%), Gaps = 3/320 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L +  F+ ++  ++ LI+     N +E+A  ++ +M E GI PD+V  T ++    K G+
Sbjct: 132 LMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEMGIKPDVVIYTTIIDSLCKNGH 191

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D A   F  + ++G +PD  +Y S++    N+G+ +    L+  M+   I+     + A
Sbjct: 192 VDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSGRWRDADLLLRGMMKRKIKPDVITFNA 251

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+ +F + G +  A ++ N M      P + + T L+      G  D+AR  F  M   G
Sbjct: 252 LIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTYTSLINGLCMEGRLDEARQMFYLMETKG 311

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD     S+I  + K   ++ A+ +  E+ + G      TYT L+   G +   N A+
Sbjct: 312 CFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTTLIQGFGLVGKPNVAQ 371

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD---FERII 544
           ++ G +   G  P  +    L       G   KAL     ++ ++    P +   +  ++
Sbjct: 372 EVFGHMVSRGVPPNIRTYNVLLHCLCYNGKVNKALMIFEDMQKREIDGVPPNIRTYNVLL 431

Query: 545 NGLLAGGFLQDAQRVHGLME 564
           +GL   G L+ A  V G M+
Sbjct: 432 HGLCYNGKLEKALMVFGDMQ 451



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/313 (23%), Positives = 130/313 (41%), Gaps = 3/313 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L++         DA+ +L+ M +  I PD++T   L+  + K G L  AKE +  + 
Sbjct: 214 YTSLVNGLCNSGRWRDADLLLRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMI 273

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
                P+   Y S+I      G+      +  +M T G       Y +L+  F +C  V 
Sbjct: 274 QMSIAPNIFTYTSLINGLCMEGRLDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVE 333

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A +I   M  +       + T L++ +G  G P+ A+  F +M+  G  P+ R    ++
Sbjct: 334 DAMKIFYEMSQKGLTGNTITYTTLIQGFGLVGKPNVAQEVFGHMVSRGVPPNIRTYNVLL 393

Query: 440 AAYGKKNLLDKALNLLLELEK---DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
                   ++KAL +  +++K   DG  P   TY VL+  L     + +A  + G + + 
Sbjct: 394 HCLCYNGKVNKALMIFEDMQKREIDGVPPNIRTYNVLLHGLCYNGKLEKALMVFGDMQKR 453

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDA 556
                      +     +AG  K AL     L +K  +     +  +I+GL   G + +A
Sbjct: 454 DMDIGIITYTIIIQGMCKAGKVKDALNLFCSLPSKGVKPNVVTYTTMISGLFREGLMLEA 513

Query: 557 QRVHGLMEAQGFA 569
             +   M+  G +
Sbjct: 514 HVLFRKMKEDGVS 526



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 75/330 (22%), Positives = 138/330 (41%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           ++ D+++L++  AK    +    + K +   G+  D+ T  +L++ + ++     A    
Sbjct: 70  SIIDFTRLLNVIAKMKKFDVVINLCKHLQIMGVSNDLYTCNLLMNCFCQSSQPCLASSFL 129

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             L   GF+PD   + S+I  +    + +  MS+V+ M+  GI+    IY  ++ S  + 
Sbjct: 130 GKLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEMGIKPDVVIYTTIIDSLCKN 189

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G V  A  + N M     +P +   T LV     +G    A      M++   KPD    
Sbjct: 190 GHVDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSGRWRDADLLLRGMMKRKIKPDVITF 249

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I A+ K+  L  A  L  E+ +    P   TYT L++ L     ++EA Q+   +  
Sbjct: 250 NALIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTYTSLINGLCMEGRLDEARQMFYLMET 309

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
            G  P      SL + + +    + A++    +  K        +  +I G    G    
Sbjct: 310 KGCFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTTLIQGFGLVGKPNV 369

Query: 556 AQRVHGLMEAQGFAASERLKVALISSQTFN 585
           AQ V G M ++G   + R    L+    +N
Sbjct: 370 AQEVFGHMVSRGVPPNIRTYNVLLHCLCYN 399



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 68/286 (23%), Positives = 118/286 (41%), Gaps = 3/286 (1%)

Query: 215 KELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           K  ++P  I +  L+D   ++   L  K     + + S   N+  Y+ LI+    E  L+
Sbjct: 239 KRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTYTSLINGLCMEGRLD 298

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           +A ++   M   G  PD+V  T L++ + K   ++ A + F  +   G   +   Y ++I
Sbjct: 299 EARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTTLI 358

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR---IE 391
             +   G+P +   +   M++ G+  +   Y  LL      G V  A  I   M+   I+
Sbjct: 359 QGFGLVGKPNVAQEVFGHMVSRGVPPNIRTYNVLLHCLCYNGKVNKALMIFEDMQKREID 418

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
              P + +  +L+      G  ++A   F  M +            +I    K   +  A
Sbjct: 419 GVPPNIRTYNVLLHGLCYNGKLEKALMVFGDMQKRDMDIGIITYTIIIQGMCKAGKVKDA 478

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           LNL   L   G +P   TYT ++  L R  L+ EA  L  K+ E G
Sbjct: 479 LNLFCSLPSKGVKPNVVTYTTMISGLFREGLMLEAHVLFRKMKEDG 524



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 67/319 (21%), Positives = 126/319 (39%), Gaps = 2/319 (0%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
             +A  +   M E+  +P I+  T L+++ +K    D      + L+  G   D    N 
Sbjct: 52  FNEALDLFSHMVESRPLPSIIDFTRLLNVIAKMKKFDVVINLCKHLQIMGVSNDLYTCNL 111

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           ++  +  + QP L  S +  ++  G E     + +L+  F     +  A  + N M    
Sbjct: 112 LMNCFCQSSQPCLASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEMG 171

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
            +P +   T ++++  + G  D A S F+ M   G +PD     S++           A 
Sbjct: 172 IKPDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSGRWRDAD 231

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
            LL  + K   +P   T+  L+D   +   + +A++L  ++ ++  AP      SL +  
Sbjct: 232 LLLRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTYTSLINGL 291

Query: 513 ARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572
              G   +A Q    +E K        +  +ING      ++DA ++   M  +G   + 
Sbjct: 292 CMEGRLDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNT 351

Query: 573 RLKVALISSQTFNRQRQPT 591
                LI  Q F    +P 
Sbjct: 352 ITYTTLI--QGFGLVGKPN 368


>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
 gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
 gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
 gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
 gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 729

 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 145/312 (46%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +S      NV   + +++A  K+  +E     L ++ E G+ PDIVT   L+  YS  G 
Sbjct: 226 ISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGL 285

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           ++ A E   ++   GF P    YN++I      G+ +    +   M+ SG+      Y +
Sbjct: 286 MEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRS 345

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           LL    + GDV    ++ + MR  +  P L   + ++  + ++G+ D+A   F+ +   G
Sbjct: 346 LLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAG 405

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD+     +I  Y +K ++  A+NL  E+ + G      TY  ++  L + +++ EA+
Sbjct: 406 LIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEAD 465

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
           +L  +++E    P       L D + + G  + A++    ++ K+ ++    +  +++G 
Sbjct: 466 KLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGF 525

Query: 548 LAGGFLQDAQRV 559
              G +  A+ +
Sbjct: 526 GKVGDIDTAKEI 537



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 70/321 (21%), Positives = 135/321 (42%), Gaps = 37/321 (11%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ ++    K   L +A+++  +M E  + PD  T T+L+  + K GNL  A E F
Sbjct: 444 DVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELF 503

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + ++    + D   YN+++  +   G       +   M++  I  +   Y  L+ +    
Sbjct: 504 QKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSK 563

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A ++ + M  +  +PT+  C  +++ Y ++G+     S  + MI  G  PD    
Sbjct: 564 GHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISY 623

Query: 436 ASMIAAYGKKNLLDKALNLL--LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
            ++I  + ++  + KA  L+  +E E+ G  P   TY  ++    R   + EAE +L K+
Sbjct: 624 NTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKM 683

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFL 553
            E G  P                                       +  +ING ++   L
Sbjct: 684 IERGVNPD-----------------------------------RSTYTCMINGFVSQDNL 708

Query: 554 QDAQRVHGLMEAQGFAASERL 574
            +A R+H  M  +GF+  ++ 
Sbjct: 709 TEAFRIHDEMLQRGFSPDDKF 729



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 95/220 (43%), Gaps = 2/220 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E+  + +V  Y+ L+D   K   ++ A+ I   M    I+P  ++ ++LV+     G+
Sbjct: 506 MKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGH 565

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L  A   ++ + S   +P   + NSMI  Y  +G    G S ++ MI+ G       Y  
Sbjct: 566 LAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNT 625

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEE--FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
           L+  F +  ++  A  +   M  E+    P + +   ++  + +     +A      MI 
Sbjct: 626 LIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIE 685

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
            G  PD      MI  +  ++ L +A  +  E+ + GF P
Sbjct: 686 RGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSP 725



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 61/275 (22%), Positives = 112/275 (40%), Gaps = 4/275 (1%)

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           +L+  Y +A  L  A EAF  LRS GF       N++I + V  G  +L   +   +  S
Sbjct: 170 LLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRS 229

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
           G+  +      ++ +  + G +   G   + ++ +   P + +   L+ AY   G  ++A
Sbjct: 230 GVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEA 289

Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476
               + M   G  P      ++I    K    ++A  +  E+ + G  P   TY  L+  
Sbjct: 290 FELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLME 349

Query: 477 LGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG 536
             +   + E E++   +      P      S+  ++ R+G   KAL  + F   K+  + 
Sbjct: 350 ACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKAL--MYFNSVKEAGLI 407

Query: 537 PDD--FERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
           PD+  +  +I G    G +  A  +   M  QG A
Sbjct: 408 PDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCA 442



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/320 (17%), Positives = 121/320 (37%), Gaps = 35/320 (10%)

Query: 244 AELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS 303
           A  +L  + F  ++   + LI +  +   +E A  + ++++ +G+  ++ T  ++V+   
Sbjct: 187 AFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALC 246

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363
           K G +++       ++  G  PD   YN++I AY + G  +    L++ M   G      
Sbjct: 247 KDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKG------ 300

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
                                        F P + +   ++    + G  ++A+  F  M
Sbjct: 301 -----------------------------FSPGVYTYNTVINGLCKHGKYERAKEVFAEM 331

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483
           +R G  PD     S++    KK  + +   +  ++      P    ++ ++    R   +
Sbjct: 332 LRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNL 391

Query: 484 NEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERI 543
           ++A      + E G  P   I   L   Y R G+   A+     +  +   M    +  I
Sbjct: 392 DKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTI 451

Query: 544 INGLLAGGFLQDAQRVHGLM 563
           ++GL     L +A ++   M
Sbjct: 452 LHGLCKRKMLGEADKLFNEM 471



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 4/165 (2%)

Query: 167 EVAEKIHERGEMILPEEPKPITGKCK-LITDKILSLEKEEDPSPLLAEWKELLQPSRIDW 225
            +AE      EMI  +  KP    C  +I     S    +  S L     E   P  I +
Sbjct: 565 HLAEAFRVWDEMI-SKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISY 623

Query: 226 INLL-DRLREQNTQLYFKVAELVLSEES-FQTNVRDYSKLIDAHAKENCLEDAERILKKM 283
             L+   +RE+N    F + + +  E+     +V  Y+ ++    ++N +++AE +L+KM
Sbjct: 624 NTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKM 683

Query: 284 NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKK 328
            E G+ PD  T T +++ +    NL  A    + +   GF PD K
Sbjct: 684 IERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPDDK 728



 Score = 47.0 bits (110), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 43/243 (17%), Positives = 100/243 (41%), Gaps = 20/243 (8%)

Query: 296 TVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMIT 355
           + ++H+  ++G L  A+     +         ++ NS+   + N G              
Sbjct: 117 SAMIHILVRSGRLSDAQSCLLRMIRRSGVSRLEIVNSLDSTFSNCGS------------- 163

Query: 356 SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ 415
                ++ ++  L+R++ Q   +R A +   ++R + F  ++++C  L+ +  + G  + 
Sbjct: 164 -----NDSVFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVEL 218

Query: 416 ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
           A   +  + R G   +      M+ A  K   ++K    L ++++ G  P   TY  L+ 
Sbjct: 219 AWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLIS 278

Query: 476 WLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQM 535
                 L+ EA +L+  +   G +P      ++ +   + G  ++A +   F E  +  +
Sbjct: 279 AYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEV--FAEMLRSGL 336

Query: 536 GPD 538
            PD
Sbjct: 337 SPD 339


>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 138/314 (43%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           Q NV  Y+ +ID+  K   + +A  +  +M   GI PD+VT + L+  +   G L  A +
Sbjct: 222 QPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAID 281

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            F  +     +PD   +N ++ A+   G+ K G ++ DMM+  GI+ +   Y +L+  + 
Sbjct: 282 LFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYC 341

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
              +V  A  I N M      P ++S ++++  + +    D+A + F  M R    PD  
Sbjct: 342 LVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVV 401

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
             +S+I    K   +  AL L+ ++   G  P   TY  ++D L +   +++A  LL K 
Sbjct: 402 TYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKF 461

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFL 553
            + G  P       L     ++G  + A +    L  K   +    +  +I G    G  
Sbjct: 462 KDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLF 521

Query: 554 QDAQRVHGLMEAQG 567
            +A  +   ME  G
Sbjct: 522 NEALALLSKMEDNG 535



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 118/244 (48%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++ ++  + N   Y+ L+D +     +  A+ I   M + G+ PDI + +++++ + K  
Sbjct: 320 MMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIK 379

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
             D A   F+ +      PD   Y+S+I     +G+    + LVD M   G+  +   Y 
Sbjct: 380 KFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYN 439

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           ++L +  +   V  A  +    + + FQP + + ++L++   Q+G  + AR  F+ ++  
Sbjct: 440 SILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVK 499

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G+  D      MI  +  + L ++AL LL ++E +G  P   TY +++  L +    + A
Sbjct: 500 GYNLDVYAYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMA 559

Query: 487 EQLL 490
           E+LL
Sbjct: 560 EKLL 563



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 129/317 (40%), Gaps = 35/317 (11%)

Query: 287 GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLG 346
           G   D ++   L+H   K G    A +  + +  +  QP+  +YN++I +          
Sbjct: 185 GFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEA 244

Query: 347 MSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA 406
             L   M++ GI      Y AL+  F   G ++ A  + N M +E  +P + +  +LV A
Sbjct: 245 FDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNA 304

Query: 407 YGQAGDPDQARSNFDYMIRLGHKP---------DDRCTAS-------------------- 437
           + + G   + ++ FD M++ G KP         D  C                       
Sbjct: 305 FCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPD 364

Query: 438 ------MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
                 MI  + K    D+A+NL  E+ +    P   TY+ L+D L +   I+ A QL+ 
Sbjct: 365 IQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVD 424

Query: 492 KISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGG 551
           ++ + G  P      S+ D   +     KA+  L   + K  Q     +  +I GL   G
Sbjct: 425 QMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSG 484

Query: 552 FLQDAQRVHGLMEAQGF 568
            L+DA++V   +  +G+
Sbjct: 485 KLEDARKVFEDLLVKGY 501



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 64/326 (19%), Positives = 131/326 (40%), Gaps = 20/326 (6%)

Query: 224 DWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKM 283
           D ++L +RL  +NT           +  +F+ N     K++ +  K         + +KM
Sbjct: 68  DAVSLFNRLLRRNT-----------TPPAFEFN-----KILGSLVKSKHYHTVLYLSQKM 111

Query: 284 NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343
              GI P++V   +L++ + + G +  A   F  +   G+ PD   + ++       GQ 
Sbjct: 112 EFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLCLKGQI 171

Query: 344 KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403
           +      D ++  G    +  Y  L+    + G+ R A  +   +     QP +     +
Sbjct: 172 QQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTI 231

Query: 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGF 463
           +++  +    ++A   F  M+  G  PD    +++I+ +     L  A++L  ++  +  
Sbjct: 232 IDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENI 291

Query: 464 EPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
           +P   T+ +LV+   +   + E + +   + + G  P F    SL D Y       KA  
Sbjct: 292 KPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKS 351

Query: 524 ALGFLEAKKEQMGPD--DFERIINGL 547
              F    +  + PD   +  +ING 
Sbjct: 352 I--FNTMAQGGVNPDIQSYSIMINGF 375



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 86/188 (45%), Gaps = 13/188 (6%)

Query: 187 ITGKCKLIT-DKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAE 245
           I G CK+   D+ ++L KE     ++        P  + + +L+D L +     Y    +
Sbjct: 372 INGFCKIKKFDEAMNLFKEMHRKNII--------PDVVTYSSLIDGLSKSGRISY--ALQ 421

Query: 246 LV--LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS 303
           LV  + +     N+  Y+ ++DA  K + ++ A  +L K  + G  PDI T ++L+    
Sbjct: 422 LVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLC 481

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363
           ++G L+ A++ FE L   G+  D   Y  MI  +   G     ++L+  M  +G     +
Sbjct: 482 QSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAK 541

Query: 364 IYLALLRS 371
            Y  ++ S
Sbjct: 542 TYEIIILS 549



 Score = 42.7 bits (99), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 70/152 (46%), Gaps = 3/152 (1%)

Query: 220 PSRIDWINLLDRLREQNTQLYFKVAELV-LSEESFQTNVRDYSKLIDAHAKENCLEDAER 278
           P+   + ++LD L + + Q+   +A L    ++ FQ ++  YS LI    +   LEDA +
Sbjct: 433 PNICTYNSILDALCKTH-QVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARK 491

Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338
           + + +   G   D+   T+++  +   G  + A      +  +G  PD K Y  +I++  
Sbjct: 492 VFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLF 551

Query: 339 NAGQPKLGMSLVDMMITSGIERS-EEIYLALL 369
              +  +   L+  MI  G+  +  ++YL  L
Sbjct: 552 KKDENDMAEKLLREMIARGLPLNFYDLYLTRL 583


>gi|115459104|ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group]
 gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa Japonica Group]
          Length = 801

 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 145/320 (45%), Gaps = 22/320 (6%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           + F  +   YSK+I        +E A  + ++M   G+ PD+ T T+L+  + KAG +++
Sbjct: 282 KGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQ 341

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A+  FE +RS G  P    Y ++I AY+ A Q      +   M+ +G   ++  Y AL+ 
Sbjct: 342 AQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVD 401

Query: 371 SFAQCGDVRGAGQI------TNIMRIEEF----------QPTLESCTLLVEAYGQAGDPD 414
              + G++  A ++      T+     +F           P + +   LV+   +A   D
Sbjct: 402 GLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVD 461

Query: 415 QARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
            A    D M+  G +P+     ++I  + K   +D A  + L++ K G+ P   TYT L+
Sbjct: 462 HAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLI 521

Query: 475 DWL---GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK 531
           D +   GRL L   A ++L ++ +    P      ++ D   R G  +KAL+ L  +E K
Sbjct: 522 DRMFKDGRLDL---AMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEK 578

Query: 532 KEQMGPDDFERIINGLLAGG 551
                   +  +I+GL   G
Sbjct: 579 GCSPNVVTYTALIDGLGKAG 598



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 125/287 (43%), Gaps = 16/287 (5%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
            V  Y+ LI A+ K   +  A  I  +M + G  P+ VT   LV    KAGN+ +A E +
Sbjct: 357 TVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVY 416

Query: 316 ESLRS----------------HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
             L                  H   P+   Y +++     A +      L+D M++SG E
Sbjct: 417 AKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCE 476

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
            +  +Y AL+  F + G +  A ++   M    + P++ + T L++   + G  D A   
Sbjct: 477 PNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKV 536

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
              M++    P+     +MI    +    +KAL LL  +E+ G  P   TYT L+D LG+
Sbjct: 537 LSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGK 596

Query: 480 LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALG 526
              I+ +  L  ++S  G +P +     L +    AG+  KA   LG
Sbjct: 597 AGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLG 643



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 83/368 (22%), Positives = 150/368 (40%), Gaps = 30/368 (8%)

Query: 225 WINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMN 284
           +  L+      ++  YF   +      +   NV  Y  L+D   K + ++ A  +L  M 
Sbjct: 416 YAKLIGTSDSADSDFYFPCED----RHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAML 471

Query: 285 ENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPK 344
            +G  P+ +    L+  + KAG +D A+E F  +   G+ P    Y S+I      G+  
Sbjct: 472 SSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLD 531

Query: 345 LGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
           L M ++  M+      +   Y A++    + G+   A ++ ++M  +   P + + T L+
Sbjct: 532 LAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALI 591

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
           +  G+AG  D +   F  M R G  P+      +I       LLDKA  LL E+++  + 
Sbjct: 592 DGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWP 651

Query: 465 PGPATYTVLV-----DWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEK 519
                Y   +      ++  L ++ E E         G  P   +   L D +++AG  +
Sbjct: 652 KYLQGYRCAIQGFSKSFIASLGILEEME-------SYGTVPIAPVYGMLIDCFSKAGRLE 704

Query: 520 KALQALGFLEAKKEQM--------GPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAAS 571
            A      +E  KE M          D +  +I  L     +++A R++  M  +GF   
Sbjct: 705 IA------MELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPE 758

Query: 572 ERLKVALI 579
             + V LI
Sbjct: 759 LSVFVCLI 766



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 71/334 (21%), Positives = 131/334 (39%), Gaps = 32/334 (9%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++  E F+ +    + +I    + +  ++A   L +M  N  +P++VT   L+  + K  
Sbjct: 97  MIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKK 156

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            L   K     + + G  P+  ++NS++ +Y N         L++ M T G      +Y 
Sbjct: 157 QLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYN 216

Query: 367 ALLRSFAQ----------------CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410
             + S                    G++  A  + N + +  F   L             
Sbjct: 217 IFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCG----------V 266

Query: 411 GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATY 470
           G  D+A      M+R G  PD    + +I        ++KA  L  E++  G  P   TY
Sbjct: 267 GKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTY 326

Query: 471 TVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALG-FLE 529
           T+L+D   +  LI +A+ L  ++  +G +P      +L   Y +A   K+  QA   F  
Sbjct: 327 TILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKA---KQVPQANDIFHR 383

Query: 530 AKKEQMGPDD--FERIINGLLAGGFLQDAQRVHG 561
                  P+D  +  +++GL   G +  A  V+ 
Sbjct: 384 MVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYA 417



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/305 (23%), Positives = 121/305 (39%), Gaps = 20/305 (6%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           L+ AE+I  +M     V + V            G  D+A +  + +   GF PD   Y+ 
Sbjct: 234 LDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSK 293

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I    +A + +    L   M   G+      Y  L+ SF + G +  A  +   MR   
Sbjct: 294 VITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVG 353

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             PT+ + T L+ AY +A    QA   F  M+  G +P+D    +++    K   + KA 
Sbjct: 354 CSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAF 413

Query: 453 NLLLEL----------------EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
            +  +L                ++    P   TY  LVD L +   ++ A +LL  +   
Sbjct: 414 EVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSS 473

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQ 554
           G  P   +  +L D + +AG    A +   FL+  K    P    +  +I+ +   G L 
Sbjct: 474 GCEPNHIVYDALIDGFCKAGKIDSAQEV--FLQMTKCGYLPSVHTYTSLIDRMFKDGRLD 531

Query: 555 DAQRV 559
            A +V
Sbjct: 532 LAMKV 536



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 77/384 (20%), Positives = 139/384 (36%), Gaps = 64/384 (16%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+   +    ++   R+ K+M+E+G   D  T     H   K G   R  +A + + 
Sbjct: 43  YNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEG---RWADALDMIE 99

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
              F+ D  +   MI   + A      MS +  M  +    +   Y  LL  F +   + 
Sbjct: 100 REDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLG 159

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD-------- 431
              +I N+M  E   P       LV +Y    D   A    + M   G  P         
Sbjct: 160 WCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFI 219

Query: 432 ------------------DRCTASMIAA---YGKKNL------------LDKALNLLLEL 458
                             ++    M+AA     K N+             DKA  L+ E+
Sbjct: 220 GSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEM 279

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
            + GF P  +TY+ ++ +L     + +A  L  ++  +G  P       L D + +AG+ 
Sbjct: 280 MRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLI 339

Query: 519 KKA------LQALG--------------FLEAKKEQMGPDDFERIINGLLAGGFLQDAQR 558
           ++A      ++++G              +L+AK+     D F R+++       +     
Sbjct: 340 EQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGAL 399

Query: 559 VHGLMEAQGFAASERLKVALISSQ 582
           V GL +A   + +  +   LI + 
Sbjct: 400 VDGLCKAGNISKAFEVYAKLIGTS 423



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 101/238 (42%), Gaps = 37/238 (15%)

Query: 215 KELLQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCL 273
           K+   P+ + +  ++D L R   ++   K+  L + E+    NV  Y+ LID   K   +
Sbjct: 542 KDSCTPNVVTYTAMIDGLCRIGESEKALKLLSL-MEEKGCSPNVVTYTALIDGLGKAGKI 600

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK--------------------- 312
           + +  +  +M+  G  P+ VT  VL++    AG LD+A+                     
Sbjct: 601 DLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCA 660

Query: 313 -EAF-----------ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV-DMM-ITSGI 358
            + F           E + S+G  P   VY  +I  +  AG+ ++ M L  +MM + S +
Sbjct: 661 IQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSV 720

Query: 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
           +   ++Y +L+++      V  A ++ + M    F P L     L++   +    D+A
Sbjct: 721 KTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEA 778



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 85/194 (43%), Gaps = 3/194 (1%)

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A ++ + L+  G++P K  YN+++    +AGQ  LG  +   M  SG     + +     
Sbjct: 24  AGDSEDPLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGF--CMDRFTVGCF 81

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
           + A C + R A  +  I R E+F+     CT ++    +A   D+A S    M      P
Sbjct: 82  AHALCKEGRWADALDMIER-EDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIP 140

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           +     ++++ + KK  L     ++  +  +G  P P+ +  LV      +    A +LL
Sbjct: 141 NVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLL 200

Query: 491 GKISELGEAPPFKI 504
            +++  G  P + +
Sbjct: 201 NRMTTCGCPPGYVV 214


>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 148/334 (44%), Gaps = 4/334 (1%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E     N+  Y+ L+DA  K   L+ A  +  +M   G  P +VT  +L+     AG + 
Sbjct: 163 ERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVG 222

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A++ F  +   G  PD   Y++++     +G+ +    +   M+  G+      Y +LL
Sbjct: 223 AARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLL 282

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
            + A+ G++    ++   M  + F P   S   +++A G+A  PD AR  F  M+  G K
Sbjct: 283 ATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCK 342

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD      +I +Y +     +A  +L E+ + GF P   TY  L+ WL     ++EA  +
Sbjct: 343 PDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAV 402

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERI--INGL 547
           L ++   G  P       L DM  + G  ++A +   F + K + + PD       I+GL
Sbjct: 403 LEEMETAGCRPDVVTYNRLMDMLGKRGENQRAARL--FQQMKDKGVEPDTLSYAVRIDGL 460

Query: 548 LAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
                L +A  +   M+A G    + +   LI +
Sbjct: 461 AFDDRLDEALVLFKDMKAVGCPVDKAMYRILIRA 494



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 94/366 (25%), Positives = 152/366 (41%), Gaps = 49/366 (13%)

Query: 245 ELVLSEESFQTN--VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMY 302
           +L    ESF  +  V  ++KLID        E AE + KK+ + G   D     VL+  +
Sbjct: 51  DLFNQAESFACSPTVHAFTKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYF 110

Query: 303 SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE 362
            ++G LD A E F  ++  G +PD+  Y  ++ A   AG+ +   S  D M+  G+  + 
Sbjct: 111 GRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNI 170

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
             Y  L+ +F + G +  A  +   M+   FQP++ +  +L++A   AG    AR  F  
Sbjct: 171 PTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHK 230

Query: 423 MIRLGHKPD----------------------------DRCTA-------SMIAAYGKKNL 447
           M   G  PD                            DR  A       S++A   K   
Sbjct: 231 MTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGN 290

Query: 448 LDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVS 507
           +D+   L+ E+ + GF P   ++  ++D LG+    + A ++  ++ E G  P       
Sbjct: 291 MDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNI 350

Query: 508 LCDMYARAGIEKKALQAL------GFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHG 561
           L D YAR G   +A Q L      GF+   K       +  +I+ L   G + +A  V  
Sbjct: 351 LIDSYARFGDAAQARQMLEEMVEAGFIPETKT------YNSLIHWLATDGQVDEAFAVLE 404

Query: 562 LMEAQG 567
            ME  G
Sbjct: 405 EMETAG 410



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 127/297 (42%), Gaps = 46/297 (15%)

Query: 210 LLAEWKEL-LQPSRIDWINLLDRLREQNT-----QLYFKVAELVLSEESFQTNVRDYSKL 263
           L AE K    QPS + +  LLD L          +L+ K+     S +S+      YS L
Sbjct: 192 LFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYT-----YSTL 246

Query: 264 IDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGF 323
           ++   K   +E+A ++ ++M + G+  D+V    L+   +KAGN+DR  +  + +   GF
Sbjct: 247 VNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGF 306

Query: 324 QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQ 383
            PD   +N+++ A   A +P     +   M+ SG                          
Sbjct: 307 HPDAFSFNTIMDALGKANKPDAAREVFARMVESGC------------------------- 341

Query: 384 ITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYG 443
                     +P L S  +L+++Y + GD  QAR   + M+  G  P+ +   S+I    
Sbjct: 342 ----------KPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLA 391

Query: 444 KKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
               +D+A  +L E+E  G  P   TY  L+D LG+      A +L  ++ + G  P
Sbjct: 392 TDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEP 448



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 110/244 (45%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           L+  E +LK+M   G      T   L+  Y +      A + F    S    P    +  
Sbjct: 11  LDPLETLLKEMVAEGRPLRPNTLVKLITAYGRGNKSGDAFDLFNQAESFACSPTVHAFTK 70

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I   VN+G+ +    +   ++  G +     Y  L+R F + G +  A ++   M+I+ 
Sbjct: 71  LIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKG 130

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
            +P   +   LV A G+AG   +ARS FD M+  G  P+      ++ A+ K   LD AL
Sbjct: 131 SEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMAL 190

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
            L  E+++ GF+P   TY +L+D L     +  A +L  K++  G +P      +L +  
Sbjct: 191 GLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGL 250

Query: 513 ARAG 516
            ++G
Sbjct: 251 GKSG 254



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 119/279 (42%), Gaps = 2/279 (0%)

Query: 262 KLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSH 321
           KLI A+ + N   DA  +  +       P +   T L+ +   +G  +RA+  ++ L   
Sbjct: 35  KLITAYGRGNKSGDAFDLFNQAESFACSPTVHAFTKLIDILVNSGEFERAELVYKKLVQK 94

Query: 322 GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGA 381
           G Q D+  YN +I  +  +GQ    M +   M   G E  E  Y  L+ +  + G V+ A
Sbjct: 95  GCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEA 154

Query: 382 GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441
               + M      P + +  LL++A+ + G  D A   F  M R G +P       ++ A
Sbjct: 155 RSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDA 214

Query: 442 YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
                 +  A  L  ++  DG  P   TY+ LV+ LG+   + EA ++  ++ + G A  
Sbjct: 215 LCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVD 274

Query: 502 FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF 540
                SL    A+AG   +  + +   E  ++   PD F
Sbjct: 275 LVNYNSLLATLAKAGNMDRVWKLMK--EMSRKGFHPDAF 311



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 97/227 (42%), Gaps = 35/227 (15%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +S + F  +   ++ ++DA  K N  + A  +  +M E+G  PD+++  +L+  Y++ G+
Sbjct: 301 MSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGD 360

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
             +A++  E +   GF P+ K YNS+I      GQ     ++++ M T+G          
Sbjct: 361 AAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGC--------- 411

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
                                     +P + +   L++  G+ G+  +A   F  M   G
Sbjct: 412 --------------------------RPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKG 445

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
            +PD    A  I      + LD+AL L  +++  G     A Y +L+
Sbjct: 446 VEPDTLSYAVRIDGLAFDDRLDEALVLFKDMKAVGCPVDKAMYRILI 492



 Score = 42.0 bits (97), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 46/90 (51%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y++L+D   K    + A R+ ++M + G+ PD ++  V +   +    LD A   F
Sbjct: 414 DVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLF 473

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKL 345
           + +++ G   DK +Y  +I A   AG  +L
Sbjct: 474 KDMKAVGCPVDKAMYRILIRAAHRAGDTEL 503


>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
 gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
          Length = 599

 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 129/303 (42%), Gaps = 5/303 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  LID  AK   L +A ++ ++M ++GI P  VT  V++H    A  LD A E F+S+R
Sbjct: 188 YGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMR 247

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           S G +P +  +N +I A+   G+      L+  M   G       Y  L+        V 
Sbjct: 248 SKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVD 307

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  +   M   + +PT+ +   L+    +AG   +AR   D M+  G  PD     +++
Sbjct: 308 DARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLV 367

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             + +    ++A  LL ++   G  P   TYT LV  L +   + EA  +  ++   G A
Sbjct: 368 HGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCA 427

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P      +L   +  AG     L+  G  E     + PD    ++ G LA    +  +  
Sbjct: 428 PNLFTYTALILGFCSAGQVDGGLKLFG--EMVCAGISPD---HVVYGTLAAELCKSGRSA 482

Query: 560 HGL 562
             L
Sbjct: 483 RAL 485



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 84/365 (23%), Positives = 158/365 (43%), Gaps = 4/365 (1%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELV--LSEESFQTNVRDYSKLIDAHAKENCLED 275
           + PS + + +L+  L   N+  +    EL   ++      +   Y+ +IDA  K   LE+
Sbjct: 41  VTPSTVAYTSLIHGLCMANS--FDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEE 98

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A  ++KKM E+G VPD+VT   ++    K+  ++ A   F  +   G  P+++ +N++I+
Sbjct: 99  ACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIIL 158

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
                 +      +   M    I      Y  L+   A+ G +  A ++   M      P
Sbjct: 159 GLCQQSKIDQACQVFHEMEAKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITP 218

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
           +  +  +++     A   D+A   F  M   G +P       +I A+ K+  LD+A  LL
Sbjct: 219 SAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLL 278

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
             +  DG  P   TY+ L+  L  +  +++A  LL  + +    P    Q +L     +A
Sbjct: 279 KRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKA 338

Query: 516 GIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLK 575
           G  K+A + L  + +  +      +  +++G    G  + A+ +   M A+G A +    
Sbjct: 339 GRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTY 398

Query: 576 VALIS 580
            AL+S
Sbjct: 399 TALVS 403



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 97/233 (41%), Gaps = 35/233 (15%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVT------------------------- 294
           ++ LIDAH K   L++A R+LK+M ++G VPD+VT                         
Sbjct: 258 FNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMV 317

Query: 295 ----------STVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPK 344
                        L+H   KAG +  A+E  +++ S G  PD   YN+++  +  AGQ +
Sbjct: 318 KRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTE 377

Query: 345 LGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
               L+  M+  G+  +   Y AL+    +   +  A  +   M+     P L + T L+
Sbjct: 378 RARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALI 437

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
             +  AG  D     F  M+  G  PD     ++ A   K     +AL +L E
Sbjct: 438 LGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILRE 490



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 120/313 (38%), Gaps = 2/313 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           ++E +   +   Y  LID  AK   L DA  + +K+  +G+ P  V  T L+H    A +
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            D A+E F  +   G  P    YN MI A    G  +    L+  MI  G       Y  
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++    +   V  A  + N M      P   S   ++    Q    DQA   F  M    
Sbjct: 121 VMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKD 180

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD      +I    K   L++A  L   +   G  P   TY V++  +     ++EA 
Sbjct: 181 IPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEAL 240

Query: 488 QLLGKISELGEAPP-FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
           +L   +   G  P  F   + L D + + G   +A + L  +           +  +I+G
Sbjct: 241 ELFKSMRSKGCRPSRFTFNI-LIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISG 299

Query: 547 LLAGGFLQDAQRV 559
           L +   + DA+ +
Sbjct: 300 LCSIARVDDARHL 312


>gi|125548803|gb|EAY94625.1| hypothetical protein OsI_16402 [Oryza sativa Indica Group]
          Length = 769

 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 144/316 (45%), Gaps = 22/316 (6%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           + F  +   YSK+I        +E A  + ++M   G+ PD+ T T+L+  + KAG +++
Sbjct: 451 KGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQ 510

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A+  FE +RS G  P    Y ++I AY+ A Q      +   M+ +G   ++  Y AL+ 
Sbjct: 511 AQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVD 570

Query: 371 SFAQCGDVRGAGQI------TNIMRIEEF----------QPTLESCTLLVEAYGQAGDPD 414
              + G++  A ++      T+     +F           P + +   LV+   +A   D
Sbjct: 571 GLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVD 630

Query: 415 QARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
            A    D M+  G +P+     ++I  + K   +D A  + L++ K G+ P   TYT L+
Sbjct: 631 HAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLI 690

Query: 475 DWL---GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK 531
           D +   GRL L   A ++L ++ +    P      ++ D   R G  +KAL+ L  +E K
Sbjct: 691 DRMFKDGRLDL---AMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEK 747

Query: 532 KEQMGPDDFERIINGL 547
                   +  +I+GL
Sbjct: 748 GCSPNVVTYTALIDGL 763



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 105/240 (43%), Gaps = 16/240 (6%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
            V  Y+ LI A+ K   +  A  I  +M + G  P+ VT   LV    KAGN+ +A E +
Sbjct: 526 TVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVY 585

Query: 316 ESLRS----------------HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
             L                  H   P+   Y +++     A +      L+D M++SG E
Sbjct: 586 AKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCE 645

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
            +  +Y AL+  F + G +  A ++   M    + P++ + T L++   + G  D A   
Sbjct: 646 PNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKV 705

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
              M++    P+     +MI    +    +KAL LL  +E+ G  P   TYT L+D LG+
Sbjct: 706 LSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGQ 765



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 71/334 (21%), Positives = 131/334 (39%), Gaps = 32/334 (9%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++  E F+ +    + +I    + +  ++A   L +M  N  +P++VT   L+  + K  
Sbjct: 266 MIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKK 325

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            L   K     + + G  P+  ++NS++ +Y N         L++ M T G      +Y 
Sbjct: 326 QLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYN 385

Query: 367 ALLRSFAQ----------------CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410
             + S                    G++  A  + N + +  F   L             
Sbjct: 386 IFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCG----------V 435

Query: 411 GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATY 470
           G  D+A      M+R G  PD    + +I        ++KA  L  E++  G  P   TY
Sbjct: 436 GKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTY 495

Query: 471 TVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALG-FLE 529
           T+L+D   +  LI +A+ L  ++  +G +P      +L   Y +A   K+  QA   F  
Sbjct: 496 TILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKA---KQVPQANDIFHR 552

Query: 530 AKKEQMGPDD--FERIINGLLAGGFLQDAQRVHG 561
                  P+D  +  +++GL   G +  A  V+ 
Sbjct: 553 MVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYA 586



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 72/305 (23%), Positives = 121/305 (39%), Gaps = 20/305 (6%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           L+ AE+I  +M     V + V            G  D+A +  + +   GF PD   Y+ 
Sbjct: 403 LDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSK 462

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I    +A + +    L   M   G+      Y  L+ SF + G +  A  +   MR   
Sbjct: 463 VITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVG 522

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             PT+ + T L+ AY +A    QA   F  M+  G +P+D    +++    K   + KA 
Sbjct: 523 CSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAF 582

Query: 453 NLLLEL----------------EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
            +  +L                ++    P   TY  LVD L +   ++ A +LL  +   
Sbjct: 583 EVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSS 642

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQ 554
           G  P   +  +L D + +AG    A +   FL+  K    P    +  +I+ +   G L 
Sbjct: 643 GCEPNHIVYDALIDGFCKAGKIDSAQEV--FLQMTKCGYLPSVHTYTSLIDRMFKDGRLD 700

Query: 555 DAQRV 559
            A +V
Sbjct: 701 LAMKV 705



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 78/175 (44%), Gaps = 4/175 (2%)

Query: 236 NTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTS 295
           ++  YF   +      +   NV  Y  L+D   K + ++ A  +L  M  +G  P+ +  
Sbjct: 596 DSDFYFPCED----RHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVY 651

Query: 296 TVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMIT 355
             L+  + KAG +D A+E F  +   G+ P    Y S+I      G+  L M ++  M+ 
Sbjct: 652 DALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLK 711

Query: 356 SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410
                +   Y A++    + G+   A ++ ++M  +   P + + T L++  GQ+
Sbjct: 712 DSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGQS 766



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 108/247 (43%), Gaps = 7/247 (2%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENG--IVPDIVTSTVLVHMYSKAGNLDRAKEAFES 317
           Y  L DA   +    DAER+L+++ E    ++  ++   VLV    + G  + A E    
Sbjct: 142 YDALADALGFDGRARDAERLLREIGEEDREVLGRLLN--VLVRRCCRGGMWNEALEELGR 199

Query: 318 LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
           L+  G++P K  YN+++    +AGQ  LG  +   M  SG     + +     + A C +
Sbjct: 200 LKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGF--CMDRFTVGCFAHALCKE 257

Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
            R A  +  I R E+F+     CT ++    +A   D+A S    M      P+     +
Sbjct: 258 GRWADALDMIER-EDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRT 316

Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           +++ + KK  L     ++  +  +G  P P+ +  LV      +    A +LL +++  G
Sbjct: 317 LLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCG 376

Query: 498 EAPPFKI 504
             P + +
Sbjct: 377 CPPGYVV 383



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 77/384 (20%), Positives = 139/384 (36%), Gaps = 64/384 (16%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+   +    ++   R+ K+M+E+G   D  T     H   K G   R  +A + + 
Sbjct: 212 YNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEG---RWADALDMIE 268

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
              F+ D  +   MI   + A      MS +  M  +    +   Y  LL  F +   + 
Sbjct: 269 REDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLG 328

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD-------- 431
              +I N+M  E   P       LV +Y    D   A    + M   G  P         
Sbjct: 329 WCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFI 388

Query: 432 ------------------DRCTASMIAA---YGKKNL------------LDKALNLLLEL 458
                             ++    M+AA     K N+             DKA  L+ E+
Sbjct: 389 GSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEM 448

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
            + GF P  +TY+ ++ +L     + +A  L  ++  +G  P       L D + +AG+ 
Sbjct: 449 MRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLI 508

Query: 519 KKA------LQALG--------------FLEAKKEQMGPDDFERIINGLLAGGFLQDAQR 558
           ++A      ++++G              +L+AK+     D F R+++       +     
Sbjct: 509 EQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGAL 568

Query: 559 VHGLMEAQGFAASERLKVALISSQ 582
           V GL +A   + +  +   LI + 
Sbjct: 569 VDGLCKAGNISKAFEVYAKLIGTS 592


>gi|147798989|emb|CAN61637.1| hypothetical protein VITISV_008458 [Vitis vinifera]
          Length = 708

 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 140/320 (43%), Gaps = 5/320 (1%)

Query: 214 WKELLQPSRIDWINLLDRLREQN-TQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC 272
           WK    P+      L+D L ++  T+  F++   ++  + ++ NV  Y+ +I+ + KE+ 
Sbjct: 325 WK----PNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDK 380

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           L  AE +L +M E G+VP+  T T L+  + K GN  RA E  + +   GF P+   YN+
Sbjct: 381 LNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNA 440

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I      G       L++ +   G++     Y  L+    +  D   +    N M    
Sbjct: 441 IIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVG 500

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
           F P + S T L+  + +     ++   F+  + LG  P  +   SMI  Y +      A+
Sbjct: 501 FTPDIHSYTTLISXFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYCRYGNTSLAV 560

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
            L   +   G  P   TY  L+  L +   +++A  L   + + G +P    +++L   Y
Sbjct: 561 KLFQRMSNHGCAPDSITYGALISGLCKESKLDDARNLYDAMMDKGLSPCEVTRLTLAYEY 620

Query: 513 ARAGIEKKALQALGFLEAKK 532
            +      A+  L  LE ++
Sbjct: 621 CKKDDSSTAINVLDRLEKRQ 640



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 149/334 (44%), Gaps = 5/334 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E     NV +++ LI+   K+  ++ A  +L++M   G  P++ T T L+    K G 
Sbjct: 285 MVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGW 344

Query: 308 LDRAKEAFESL-RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            ++A   F  L RS G++P+   Y +MI  Y    +      L+  M   G+  +   Y 
Sbjct: 345 TEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYT 404

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+    + G+   A ++ ++M  E F P + +   +++   + G  D+A    + +   
Sbjct: 405 TLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVH 464

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G + D      +++ + ++   +++L    ++ K GF P   +YT L+    R + + E+
Sbjct: 465 GLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISXFCRQKQMKES 524

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERII 544
           E+L  +   LG  P  K   S+   Y R G    A++   F         PD   +  +I
Sbjct: 525 ERLFEEAVSLGLIPTKKTYTSMICGYCRYGNTSLAVKL--FQRMSNHGCAPDSITYGALI 582

Query: 545 NGLLAGGFLQDAQRVHGLMEAQGFAASERLKVAL 578
           +GL     L DA+ ++  M  +G +  E  ++ L
Sbjct: 583 SGLCKESKLDDARNLYDAMMDKGLSPCEVTRLTL 616



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 140/324 (43%), Gaps = 9/324 (2%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           L++A  ++ +M   G+V    T   ++ +    G ++ A+  F  +   G  PD   +  
Sbjct: 170 LKEAVNMVVEMQNQGLVXSTQTLNCVLDVAVGMGLVEIAENMFVEMCQRGVSPDCVSFKL 229

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV-RGAGQITNIMRIE 391
           M++A  N G+       ++ M+  G          ++ +F Q G V R  G    ++ + 
Sbjct: 230 MVVACCNMGRVLEAEKWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVGYFWKMVEM- 288

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
              P + + T L+    + G   QA    + M+R G KP+     ++I    KK   +KA
Sbjct: 289 GLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKA 348

Query: 452 LNLLLELEK-DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCD 510
             L L+L + DG++P   TYT +++   +   +N AE LL ++ E G  P      +L D
Sbjct: 349 FRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLID 408

Query: 511 MYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
            + + G   +A + +  +   KE   P+   +  II+GL   G L +A R+   +   G 
Sbjct: 409 GHCKVGNFVRAYELMDLM--GKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGL 466

Query: 569 AASERLKVALISSQTFNRQRQPTR 592
            A       L+S     RQ    R
Sbjct: 467 QADGVTYTILMSVHC--RQADTNR 488



 Score = 43.1 bits (100), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 48/226 (21%), Positives = 100/226 (44%), Gaps = 5/226 (2%)

Query: 358 IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
           +ER+ E+   ++ +FA+ G ++ A  +   M+ +    + ++   +++     G  + A 
Sbjct: 150 LERANEVMQCMVMNFAENGKLKEAVNMVVEMQNQGLVXSTQTLNCVLDVAVGMGLVEIAE 209

Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
           + F  M + G  PD      M+ A      + +A   L  + + GF    AT T+++D  
Sbjct: 210 NMFVEMCQRGVSPDCVSFKLMVVACCNMGRVLEAEKWLNAMVERGFIVDNATCTLIIDAF 269

Query: 478 GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP 537
            +   +N       K+ E+G AP      +L +   + G  K+A + L   E  +    P
Sbjct: 270 CQKGYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLE--EMVRRGWKP 327

Query: 538 DDFER--IINGLLAGGFLQDAQRVH-GLMEAQGFAASERLKVALIS 580
           + +    +I+GL   G+ + A R+   L+ + G+  +     A+I+
Sbjct: 328 NVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMIN 373


>gi|357139998|ref|XP_003571561.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 807

 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/344 (23%), Positives = 149/344 (43%), Gaps = 35/344 (10%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS---- 303
           ++++    NV  Y+ +I A  K   ++ A+ IL++M  NG+ PD VT   L+H YS    
Sbjct: 237 MTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNGVQPDNVTYNTLIHGYSTLGQ 296

Query: 304 -------------------------------KAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
                                          K G ++ A+E F+S+ + G + +   Y++
Sbjct: 297 WKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIEEAREFFDSMLAKGHKLNIISYST 356

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           ++  Y  AG      +L ++M+  GI  ++ ++  L+  +A+CG VR A  I   M+   
Sbjct: 357 LLHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNILVNGYAKCGMVREAMFIFEDMQKRG 416

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P + +   ++ A+ + G  D A   F++MI  G +P+      +I  +     L KA 
Sbjct: 417 LNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAE 476

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
            L+ E+   G  P   ++  L++ L +   + EA+++   I   GE     I  SL D Y
Sbjct: 477 ELVYEIRNKGLGPCILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGY 536

Query: 513 ARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDA 556
              G   +A +    + +   +     +  ++NG    G + D 
Sbjct: 537 CLIGKMSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDG 580



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 146/327 (44%), Gaps = 4/327 (1%)

Query: 255 TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA 314
            NV  YS ++    KE  + +A  +  +M + G+ P++VT   ++H   KA  +D+A+  
Sbjct: 209 CNVVVYSTVVHGLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGI 268

Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
              +  +G QPD   YN++I  Y   GQ K  + +   M + G+  +       +    +
Sbjct: 269 LRQMVGNGVQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCK 328

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
            G +  A +  + M  +  +  + S + L+  Y  AG      + F+ M+R G  P+   
Sbjct: 329 HGRIEEAREFFDSMLAKGHKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDGIVPNQHV 388

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
              ++  Y K  ++ +A+ +  +++K G  P   TY  ++    R+  +++A      + 
Sbjct: 389 FNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMI 448

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGF 552
           + G  P F +   L   +   G   KA + +   E + + +GP    F  +IN L   G 
Sbjct: 449 DKGVEPNFAVYQCLIQGFCTHGDLVKAEELV--YEIRNKGLGPCILSFASLINHLCKEGR 506

Query: 553 LQDAQRVHGLMEAQGFAASERLKVALI 579
           + +AQR+  ++   G  A   +  +LI
Sbjct: 507 VFEAQRIFDMIIRTGEKADVNIFTSLI 533



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 110/245 (44%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  YS L+  +A   CL D   +   M  +GIVP+     +LV+ Y+K G +  A   F
Sbjct: 350 NIISYSTLLHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNILVNGYAKCGMVREAMFIF 409

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E ++  G  PD   Y ++I A+   G     M   + MI  G+E +  +Y  L++ F   
Sbjct: 410 EDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQGFCTH 469

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           GD+  A ++   +R +   P + S   L+    + G   +A+  FD +IR G K D    
Sbjct: 470 GDLVKAEELVYEIRNKGLGPCILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIF 529

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            S+I  Y     + +A  +   +   G EP   TY  LV+   +   I++   L  ++  
Sbjct: 530 TSLIDGYCLIGKMSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELLH 589

Query: 496 LGEAP 500
            G  P
Sbjct: 590 KGVKP 594



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/317 (20%), Positives = 117/317 (36%), Gaps = 82/317 (25%)

Query: 240 YFKVAELVLSEESFQTNVRD--------YSKLIDAHAKENCLEDAERILKKMNENGIVPD 291
           Y     LV     F   VRD        ++ L++ +AK   + +A  I + M + G+ PD
Sbjct: 361 YATAGCLVDMSNLFNLMVRDGIVPNQHVFNILVNGYAKCGMVREAMFIFEDMQKRGLNPD 420

Query: 292 IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAG---------- 341
           ++T   ++H + + G++D A + F  +   G +P+  VY  +I  +   G          
Sbjct: 421 VLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAEELVY 480

Query: 342 ---QPKLGMSLV----------------------DMMITSGIERSEEIYLALLRSFAQCG 376
                 LG  ++                      DM+I +G +    I+           
Sbjct: 481 EIRNKGLGPCILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIF----------- 529

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
                                   T L++ Y   G   +A    D M+ +G +PD     
Sbjct: 530 ------------------------TSLIDGYCLIGKMSEAFRVHDAMVSVGIEPDIVTYG 565

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
           +++    K   +D  L L  EL   G +P   TY +++D L        A+++  ++ E 
Sbjct: 566 TLVNGCCKNGRIDDGLILFRELLHKGVKPTTFTYGIILDGLFHAGRTAAAKEMFQEMIES 625

Query: 497 GEA---PPFKIQVS-LC 509
           G A   P + I ++ LC
Sbjct: 626 GIAVTIPTYSILLTGLC 642



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/244 (20%), Positives = 103/244 (42%)

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           +  ++ LI+   KE  + +A+RI   +   G   D+   T L+  Y   G +  A    +
Sbjct: 491 ILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGYCLIGKMSEAFRVHD 550

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
           ++ S G +PD   Y +++      G+   G+ L   ++  G++ +   Y  +L      G
Sbjct: 551 AMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTTFTYGIILDGLFHAG 610

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
               A ++   M       T+ + ++L+    +    ++A + F  +  +  K D     
Sbjct: 611 RTAAAKEMFQEMIESGIAVTIPTYSILLTGLCRNNCTEEAITVFQKLCAMNVKFDIVILN 670

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
            MI+   K    ++A  L   +   G  P   TYT++++ L +   + EAE +   + + 
Sbjct: 671 IMISKMFKARRREEAEGLFASIPDYGLVPTVQTYTIMMENLIKEGSVEEAEGVFSVMLKS 730

Query: 497 GEAP 500
           G +P
Sbjct: 731 GLSP 734



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/298 (21%), Positives = 123/298 (41%), Gaps = 9/298 (3%)

Query: 289 VPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMS 348
           +P + T ++L+    +A  LD A   F  L   G + D  V +S++    +A +    + 
Sbjct: 100 LPTVYTYSILIDCCCRARRLDLAFAFFGCLLRQGMKADVIVVSSLLRGLCDAKRTDEAVD 159

Query: 349 -LVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA- 406
            L   M   G       Y  +L+S   C D R    + +I+R+   Q     C ++V + 
Sbjct: 160 VLFHRMPELGCVPDAISYSTVLKSV--CDDGRSQWAL-DILRMAVKQGGGCPCNVVVYST 216

Query: 407 --YG--QAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
             +G  + G   +A   F  M + G  P+     S+I A  K   +DKA  +L ++  +G
Sbjct: 217 VVHGLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNG 276

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522
            +P   TY  L+     L    +A ++  +++  G  P      +      + G  ++A 
Sbjct: 277 VQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIEEAR 336

Query: 523 QALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
           +    + AK  ++    +  +++G    G L D   +  LM   G   ++ +   L++
Sbjct: 337 EFFDSMLAKGHKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNILVN 394



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 74/176 (42%), Gaps = 4/176 (2%)

Query: 211 LAEWKELLQ----PSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDA 266
           L  ++ELL     P+   +  +LD L         K     + E      +  YS L+  
Sbjct: 581 LILFRELLHKGVKPTTFTYGIILDGLFHAGRTAAAKEMFQEMIESGIAVTIPTYSILLTG 640

Query: 267 HAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPD 326
             + NC E+A  + +K+    +  DIV   +++    KA   + A+  F S+  +G  P 
Sbjct: 641 LCRNNCTEEAITVFQKLCAMNVKFDIVILNIMISKMFKARRREEAEGLFASIPDYGLVPT 700

Query: 327 KKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAG 382
            + Y  M+   +  G  +    +  +M+ SG+  +      ++R+  + G++  AG
Sbjct: 701 VQTYTIMMENLIKEGSVEEAEGVFSVMLKSGLSPTSHFINVIVRTLLEKGEIVKAG 756


>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 146/321 (45%), Gaps = 5/321 (1%)

Query: 241 FKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
           FK+  L ++ +    N+  Y+ +I+   +E  +++   IL++M++   VPD VT   L++
Sbjct: 258 FKLLRL-MALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLIN 316

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
            Y   GN  +A      +  +G  P+   Y ++I +   AG     M  +D M   G+  
Sbjct: 317 GYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHP 376

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
           +   Y  L+  F+Q G ++ A QI   M    F PT+ +   L+  +   G  + A    
Sbjct: 377 NGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLL 436

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
             MI  G  PD    +++I+ + +   L+KA  L +E+   G  P  ATY+ L+  L + 
Sbjct: 437 QEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQ 496

Query: 481 QLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD-- 538
           + + E   L  ++  LG  P      SL + Y   G   KAL+     E  ++   PD  
Sbjct: 497 RRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHD--EMIQKGFSPDIV 554

Query: 539 DFERIINGLLAGGFLQDAQRV 559
            +  +ING       ++A+R+
Sbjct: 555 TYNVLINGFNKQSRTKEAKRL 575



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 153/341 (44%), Gaps = 16/341 (4%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ +IDA+ K   + +A ++L+ M   G+ P++++  V+++   + G +    E  
Sbjct: 237 NVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEIL 296

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E +    + PD+  +N++I  Y N G     + L   M+ +G+  +   Y  L+ S  + 
Sbjct: 297 EEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKA 356

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G++  A +  + MR     P   + T L++ + Q G   QA      M+  G  P     
Sbjct: 357 GNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITY 416

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I  +     ++ A  LL E+ + GF P   +Y+ ++    R Q + +A QL  ++  
Sbjct: 417 NALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVA 476

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALG-----FLEAKKEQMGPDD--FERIINGLL 548
            G +P      SL       G+ K+  + LG     F E     + PD+  +  +IN   
Sbjct: 477 KGISPDVATYSSLIQ-----GLCKQ--RRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYC 529

Query: 549 AGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQ 589
             G L  A R+H  M  +GF+        LI+   FN+Q +
Sbjct: 530 IEGDLDKALRLHDEMIQKGFSPDIVTYNVLING--FNKQSR 568



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 153/372 (41%), Gaps = 50/372 (13%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++ LI+ +        A  +  +M +NG+ P++VT T L++   KAGNL+RA E  + +R
Sbjct: 311 FNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMR 370

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P+ + Y ++I  +   G  K    ++  M+ +G   +   Y AL+      G + 
Sbjct: 371 DRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRME 430

Query: 380 GAGQITNIMRIEEFQPTLESCT-----------------LLVEAYGQAGDPDQARSN--- 419
            A  +   M    F P + S +                 L VE   +   PD A  +   
Sbjct: 431 DASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLI 490

Query: 420 ---------------FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
                          F  M+ LG  PD+    S+I AY  +  LDKAL L  E+ + GF 
Sbjct: 491 QGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFS 550

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP---------------FKIQVSLC 509
           P   TY VL++   +     EA++LL K+      P                FK  ++L 
Sbjct: 551 PDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALM 610

Query: 510 DMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
             +   G+  +A + L  +  K  ++  + +  II+G    G ++ A  ++  M   GFA
Sbjct: 611 KGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFA 670

Query: 570 ASERLKVALISS 581
                 +AL  S
Sbjct: 671 PHSVTIMALAKS 682



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 152/341 (44%), Gaps = 9/341 (2%)

Query: 253 FQTNVRDYSKLIDAHAK-ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311
           F   V  Y+ ++DA  + +  ++ AE I K+M E+G+ P++ T  +L+  +  AGNL+  
Sbjct: 163 FMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMG 222

Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
              F  +  +G  P+   YN++I AY    +      L+ +M   G+  +   Y  ++  
Sbjct: 223 LXFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVING 282

Query: 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
             + G ++   +I   M    + P   +   L+  Y   G+  QA      M++ G  P+
Sbjct: 283 LCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPN 342

Query: 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
                ++I +  K   L++A+  L ++   G  P   TYT L+D   +   + +A Q++ 
Sbjct: 343 VVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMK 402

Query: 492 KISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ-MGPD--DFERIINGLL 548
           ++ E G  P      +L + +   G   +   A G L+   E+   PD   +  II+G  
Sbjct: 403 EMVENGFTPTIITYNALINGHCILG---RMEDASGLLQEMIERGFIPDVVSYSTIISGFC 459

Query: 549 AGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQ 589
               L+ A ++   M A+G +       +LI  Q   +QR+
Sbjct: 460 RNQELEKAFQLKVEMVAKGISPDVATYSSLI--QGLCKQRR 498



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 101/243 (41%), Gaps = 15/243 (6%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E  F  +V  YS +I    +   LE A ++  +M   GI PD+ T + L+    K   L 
Sbjct: 441 ERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLG 500

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
              + F+ + S G  PD+  Y S+I AY   G     + L D MI  G       Y  L+
Sbjct: 501 EVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLI 560

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPT-------LESCT--------LLVEAYGQAGDPD 414
             F +    + A ++   +  EE  P        +++C          L++ +   G  +
Sbjct: 561 NGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMN 620

Query: 415 QARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
           +A    + M++ G+K ++     +I  + K   ++KA NL  E+   GF P   T   L 
Sbjct: 621 EADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALA 680

Query: 475 DWL 477
             L
Sbjct: 681 KSL 683



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 62/299 (20%), Positives = 120/299 (40%), Gaps = 40/299 (13%)

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP-KLGMSLVDMMITSGIERSEEIYL 366
           +++A       +S+GF P    YN+++ A +   Q  K+   +   M+ SG+  +   Y 
Sbjct: 148 INKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYN 207

Query: 367 ALLRSFAQCGD-----------------------------------VRGAGQITNIMRIE 391
            L+R F   G+                                   +  A ++  +M ++
Sbjct: 208 ILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALK 267

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
              P L S  +++    + G   +     + M +  + PD     ++I  Y       +A
Sbjct: 268 GLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQA 327

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
           L L  E+ K+G  P   TYT L++ + +   +N A + L ++ + G  P  +   +L D 
Sbjct: 328 LVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDG 387

Query: 512 YARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
           +++ G  K+A Q +   E  +    P    +  +ING    G ++DA  +   M  +GF
Sbjct: 388 FSQQGFLKQAYQIMK--EMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGF 444



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 93/222 (41%), Gaps = 17/222 (7%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI+A+  E  L+ A R+  +M + G  PDIVT  VL++ ++K      AK     L 
Sbjct: 521 YTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLL 580

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSL----------------VDMMITSGIERSEE 363
                P++  YN++I    N  + K  ++L                ++ M+  G + +EE
Sbjct: 581 YEESVPNEITYNTLI-DNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEE 639

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
           +Y  ++   ++ G++  A  +   M    F P   +   L ++    G   +     DY 
Sbjct: 640 VYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALAKSLYHEGKEVELNQLLDYT 699

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
           ++     +      +I    K+  +D   N+L ++   G  P
Sbjct: 700 LKSCRITEAALAKVLIGINSKEGNMDAVFNVLKDMALSGLLP 741


>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 146/321 (45%), Gaps = 5/321 (1%)

Query: 241 FKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
           FK+  L ++ +    N+  Y+ +I+   +E  +++   IL++M++   VPD VT   L++
Sbjct: 258 FKLLRL-MALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLIN 316

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
            Y   GN  +A      +  +G  P+   Y ++I +   AG     M  +D M   G+  
Sbjct: 317 GYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHP 376

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
           +   Y  L+  F+Q G ++ A QI   M    F PT+ +   L+  +   G  + A    
Sbjct: 377 NGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLL 436

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
             MI  G  PD    +++I+ + +   L+KA  L +E+   G  P  ATY+ L+  L + 
Sbjct: 437 QEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQ 496

Query: 481 QLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD-- 538
           + + E   L  ++  LG  P      SL + Y   G   KAL+     E  ++   PD  
Sbjct: 497 RRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHD--EMIQKGFSPDIV 554

Query: 539 DFERIINGLLAGGFLQDAQRV 559
            +  +ING       ++A+R+
Sbjct: 555 TYNVLINGFNKQSRTKEAKRL 575



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 153/341 (44%), Gaps = 16/341 (4%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ +IDA+ K   + +A ++L+ M   G+ P++++  V+++   + G +    E  
Sbjct: 237 NVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEIL 296

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E +    + PD+  +N++I  Y N G     + L   M+ +G+  +   Y  L+ S  + 
Sbjct: 297 EEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKA 356

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G++  A +  + MR     P   + T L++ + Q G   QA      M+  G  P     
Sbjct: 357 GNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITY 416

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I  +     ++ A  LL E+ + GF P   +Y+ ++    R Q + +A QL  ++  
Sbjct: 417 NALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVA 476

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALG-----FLEAKKEQMGPDD--FERIINGLL 548
            G +P      SL       G+ K+  + LG     F E     + PD+  +  +IN   
Sbjct: 477 KGISPDVATYSSLIQ-----GLCKQ--RRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYC 529

Query: 549 AGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQ 589
             G L  A R+H  M  +GF+        LI+   FN+Q +
Sbjct: 530 IEGDLDKALRLHDEMIQKGFSPDIVTYNVLING--FNKQSR 568



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 153/372 (41%), Gaps = 50/372 (13%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++ LI+ +        A  +  +M +NG+ P++VT T L++   KAGNL+RA E  + +R
Sbjct: 311 FNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMR 370

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P+ + Y ++I  +   G  K    ++  M+ +G   +   Y AL+      G + 
Sbjct: 371 DRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRME 430

Query: 380 GAGQITNIMRIEEFQPTLESCT-----------------LLVEAYGQAGDPDQARSN--- 419
            A  +   M    F P + S +                 L VE   +   PD A  +   
Sbjct: 431 DASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLI 490

Query: 420 ---------------FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
                          F  M+ LG  PD+    S+I AY  +  LDKAL L  E+ + GF 
Sbjct: 491 QGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFS 550

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP---------------FKIQVSLC 509
           P   TY VL++   +     EA++LL K+      P                FK  ++L 
Sbjct: 551 PDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALM 610

Query: 510 DMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
             +   G+  +A + L  +  K  ++  + +  II+G    G ++ A  ++  M   GFA
Sbjct: 611 KGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFA 670

Query: 570 ASERLKVALISS 581
                 +AL  S
Sbjct: 671 PHSVTIMALAKS 682



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 152/341 (44%), Gaps = 9/341 (2%)

Query: 253 FQTNVRDYSKLIDAHAK-ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311
           F   V  Y+ ++DA  + +  ++ AE I K+M E+G+ P++ T  +L+  +  AGNL+  
Sbjct: 163 FMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMG 222

Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
              F  +  +G  P+   YN++I AY    +      L+ +M   G+  +   Y  ++  
Sbjct: 223 LFFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVING 282

Query: 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
             + G ++   +I   M    + P   +   L+  Y   G+  QA      M++ G  P+
Sbjct: 283 LCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPN 342

Query: 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
                ++I +  K   L++A+  L ++   G  P   TYT L+D   +   + +A Q++ 
Sbjct: 343 VVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMK 402

Query: 492 KISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ-MGPD--DFERIINGLL 548
           ++ E G  P      +L + +   G   +   A G L+   E+   PD   +  II+G  
Sbjct: 403 EMVENGFTPTIITYNALINGHCILG---RMEDASGLLQEMIERGFIPDVVSYSTIISGFC 459

Query: 549 AGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQ 589
               L+ A ++   M A+G +       +LI  Q   +QR+
Sbjct: 460 RNQELEKAFQLKVEMVAKGISPDVATYSSLI--QGLCKQRR 498



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 101/243 (41%), Gaps = 15/243 (6%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E  F  +V  YS +I    +   LE A ++  +M   GI PD+ T + L+    K   L 
Sbjct: 441 ERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLG 500

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
              + F+ + S G  PD+  Y S+I AY   G     + L D MI  G       Y  L+
Sbjct: 501 EVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLI 560

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPT-------LESCT--------LLVEAYGQAGDPD 414
             F +    + A ++   +  EE  P        +++C          L++ +   G  +
Sbjct: 561 NGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMN 620

Query: 415 QARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
           +A    + M++ G+K ++     +I  + K   ++KA NL  E+   GF P   T   L 
Sbjct: 621 EADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALA 680

Query: 475 DWL 477
             L
Sbjct: 681 KSL 683



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 62/299 (20%), Positives = 120/299 (40%), Gaps = 40/299 (13%)

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP-KLGMSLVDMMITSGIERSEEIYL 366
           +++A       +S+GF P    YN+++ A +   Q  K+   +   M+ SG+  +   Y 
Sbjct: 148 INKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYN 207

Query: 367 ALLRSFAQCGD-----------------------------------VRGAGQITNIMRIE 391
            L+R F   G+                                   +  A ++  +M ++
Sbjct: 208 ILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALK 267

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
              P L S  +++    + G   +     + M +  + PD     ++I  Y       +A
Sbjct: 268 GLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQA 327

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
           L L  E+ K+G  P   TYT L++ + +   +N A + L ++ + G  P  +   +L D 
Sbjct: 328 LVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDG 387

Query: 512 YARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
           +++ G  K+A Q +   E  +    P    +  +ING    G ++DA  +   M  +GF
Sbjct: 388 FSQQGFLKQAYQIMK--EMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGF 444



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 93/222 (41%), Gaps = 17/222 (7%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI+A+  E  L+ A R+  +M + G  PDIVT  VL++ ++K      AK     L 
Sbjct: 521 YTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLL 580

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSL----------------VDMMITSGIERSEE 363
                P++  YN++I    N  + K  ++L                ++ M+  G + +EE
Sbjct: 581 YEESVPNEITYNTLI-DNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEE 639

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
           +Y  ++   ++ G++  A  +   M    F P   +   L ++    G   +     DY 
Sbjct: 640 VYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALAKSLYHEGKEVELNQLLDYT 699

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
           ++     +      +I    K+  +D   N+L ++   G  P
Sbjct: 700 LKSCRITEAALAKVLIGINSKEGNMDAVFNVLKDMALSGLLP 741


>gi|255556314|ref|XP_002519191.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541506|gb|EEF43055.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 719

 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 130/290 (44%), Gaps = 19/290 (6%)

Query: 227 NLLDRLREQNTQLYF--------------KVAE-----LVLSEESFQTNVRDYSKLIDAH 267
           N+LDR  EQ  +  F              KV E       + ++    NV  Y+ +ID  
Sbjct: 413 NILDRFVEQGMKFGFSTYLALIKALYMAGKVTEGNHYFNQMVKDGLLCNVCSYNMVIDCF 472

Query: 268 AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK 327
            K + ++ A    K+M   GI P++VT   L+  Y K G + ++++    L  HGF+PD 
Sbjct: 473 CKTSMMDKATNTFKEMQYKGIPPNLVTFNTLIDGYCKGGEICKSRDLLVMLLEHGFKPDI 532

Query: 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNI 387
             ++S+I     A Q +  +     M+  G+  +   Y  L+ S    GDV  + ++   
Sbjct: 533 FTFSSIIDGLCRAKQIEDALGCFSEMVMWGLSPNAVTYNILIHSLCIIGDVPRSMKLLRK 592

Query: 388 MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447
           M+ +   P + S   L++++ + G  + A+  F  M+ LG  PD+    + I  + +   
Sbjct: 593 MQTDGINPDVFSFNALIQSFCRMGKVEDAKKLFSSMLSLGLIPDNYTYVAFIKVFCQSGR 652

Query: 448 LDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
            ++A  L L +E +G  P   T  +++D L +      A+++    SE G
Sbjct: 653 FNEAKELFLSMEANGCMPDSFTCNIILDALVKQDQFEAAQKIAKTCSEWG 702



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 65/317 (20%), Positives = 131/317 (41%), Gaps = 8/317 (2%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           + R Y+ +IDA  K N L+ A    ++M+ +   PD  T  +L+H   ++G +D A    
Sbjct: 216 STRLYNAVIDALVKSNSLDLAYLKFQQMSADNCKPDRFTYNILIHGVCRSGVVDEALRLV 275

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + +   G+ P+   Y  +I  + NA +      +++ M    +  SE    + +    +C
Sbjct: 276 KQMEGLGYSPNVFTYTILIDGFFNAKKVDEAFRVLETMKARKVSPSEATIRSFIHGVFRC 335

Query: 376 GDVRGAGQITNIMRIEEFQPTLE--SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
                A ++   +   E +P L+  +C  L+          +A +      ++GHKPD  
Sbjct: 336 VAPNKAFELA--IEFIEREPVLQRLACDTLLCCLSSKNMAREAGALLKKFGKIGHKPDSA 393

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
                +    K   L++  N+L    + G + G +TY  L+  L     + E      ++
Sbjct: 394 TFNIAMNCLIKGFDLNEVCNILDRFVEQGMKFGFSTYLALIKALYMAGKVTEGNHYFNQM 453

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGG 551
            + G          + D + +  +  KA     F E + + + P+   F  +I+G   GG
Sbjct: 454 VKDGLLCNVCSYNMVIDCFCKTSMMDKATNT--FKEMQYKGIPPNLVTFNTLIDGYCKGG 511

Query: 552 FLQDAQRVHGLMEAQGF 568
            +  ++ +  ++   GF
Sbjct: 512 EICKSRDLLVMLLEHGF 528



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/307 (21%), Positives = 124/307 (40%), Gaps = 4/307 (1%)

Query: 263 LIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG 322
           L+   + +N   +A  +LKK  + G  PD  T  + ++   K  +L+      +     G
Sbjct: 363 LLCCLSSKNMAREAGALLKKFGKIGHKPDSATFNIAMNCLIKGFDLNEVCNILDRFVEQG 422

Query: 323 FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAG 382
            +     Y ++I A   AG+   G    + M+  G+  +   Y  ++  F +   +  A 
Sbjct: 423 MKFGFSTYLALIKALYMAGKVTEGNHYFNQMVKDGLLCNVCSYNMVIDCFCKTSMMDKAT 482

Query: 383 QITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAY 442
                M+ +   P L +   L++ Y + G+  ++R     ++  G KPD    +S+I   
Sbjct: 483 NTFKEMQYKGIPPNLVTFNTLIDGYCKGGEICKSRDLLVMLLEHGFKPDIFTFSSIIDGL 542

Query: 443 GKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPF 502
            +   ++ AL    E+   G  P   TY +L+  L  +  +  + +LL K+   G  P  
Sbjct: 543 CRAKQIEDALGCFSEMVMWGLSPNAVTYNILIHSLCIIGDVPRSMKLLRKMQTDGINPDV 602

Query: 503 KIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERI--INGLLAGGFLQDAQRVH 560
               +L   + R G  + A +   F       + PD++  +  I      G   +A+ + 
Sbjct: 603 FSFNALIQSFCRMGKVEDAKKL--FSSMLSLGLIPDNYTYVAFIKVFCQSGRFNEAKELF 660

Query: 561 GLMEAQG 567
             MEA G
Sbjct: 661 LSMEANG 667



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 74/168 (44%)

Query: 323 FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAG 382
           F  D+ V   +       G   L + L+  +  SG   +EE+   L+ S+ + G  +   
Sbjct: 143 FAKDQSVKGVLANCLYRKGPVVLSVELLKDIKASGYRINEELLCILIGSWGRLGLAKYCD 202

Query: 383 QITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAY 442
           +I   +      P+      +++A  ++   D A   F  M     KPD      +I   
Sbjct: 203 EIFGQISFLGISPSTRLYNAVIDALVKSNSLDLAYLKFQQMSADNCKPDRFTYNILIHGV 262

Query: 443 GKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
            +  ++D+AL L+ ++E  G+ P   TYT+L+D     + ++EA ++L
Sbjct: 263 CRSGVVDEALRLVKQMEGLGYSPNVFTYTILIDGFFNAKKVDEAFRVL 310



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/244 (20%), Positives = 97/244 (39%), Gaps = 6/244 (2%)

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
            + I  +++  GI P       ++    K+ +LD A   F+ + +   +PD+  YN +I 
Sbjct: 201 CDEIFGQISFLGISPSTRLYNAVIDALVKSNSLDLAYLKFQQMSADNCKPDRFTYNILIH 260

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
               +G     + LV  M   G   +   Y  L+  F     V  A ++   M+  +  P
Sbjct: 261 GVCRSGVVDEALRLVKQMEGLGYSPNVFTYTILIDGFFNAKKVDEAFRVLETMKARKVSP 320

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP---DDRCTASMIAAYGKKNLLDKAL 452
           +  +    +    +   P++A   F+  I    +          +++     KN+  +A 
Sbjct: 321 SEATIRSFIHGVFRCVAPNKA---FELAIEFIEREPVLQRLACDTLLCCLSSKNMAREAG 377

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
            LL +  K G +P  AT+ + ++ L +   +NE   +L +  E G    F   ++L    
Sbjct: 378 ALLKKFGKIGHKPDSATFNIAMNCLIKGFDLNEVCNILDRFVEQGMKFGFSTYLALIKAL 437

Query: 513 ARAG 516
             AG
Sbjct: 438 YMAG 441



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 75/172 (43%), Gaps = 10/172 (5%)

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
           D++ +G      RI E     E   +L+ ++G+ G        F  +  LG  P  R   
Sbjct: 172 DIKASGY-----RINE-----ELLCILIGSWGRLGLAKYCDEIFGQISFLGISPSTRLYN 221

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
           ++I A  K N LD A     ++  D  +P   TY +L+  + R  +++EA +L+ ++  L
Sbjct: 222 AVIDALVKSNSLDLAYLKFQQMSADNCKPDRFTYNILIHGVCRSGVVDEALRLVKQMEGL 281

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLL 548
           G +P       L D +  A    +A + L  ++A+K           I+G+ 
Sbjct: 282 GYSPNVFTYTILIDGFFNAKKVDEAFRVLETMKARKVSPSEATIRSFIHGVF 333


>gi|242089061|ref|XP_002440363.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
 gi|241945648|gb|EES18793.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
          Length = 715

 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 82/324 (25%), Positives = 140/324 (43%), Gaps = 20/324 (6%)

Query: 251 ESFQTNVRDYSKLIDAHAKENC----------------LEDAERILKKMNENGIVPDIVT 294
           + F  N+  Y+ +ID   K                   LE+A R+LKKM+  G+ PD+VT
Sbjct: 168 QGFPPNIVTYNSVIDGLCKAQAMDKAEAVLQQMFDKGQLEEAVRLLKKMSGGGLQPDVVT 227

Query: 295 STVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMI 354
            ++L+  Y K G    A+  F+S+   G  PD   Y +++  Y   G       L+ +MI
Sbjct: 228 YSLLIDYYCKIGRCTEARNIFDSMVRRGQNPDAYTYRTLLHGYATKGALVDMHDLLALMI 287

Query: 355 TSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPD 414
             GI   + ++  L+R++A+   +  A      MR + F P + + T +++   +AG  +
Sbjct: 288 QDGIPLEDHVFNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVE 347

Query: 415 QARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
            A S+F  M+  G  PD     S+I          K   L  E+   G  P       ++
Sbjct: 348 DAVSHFSQMVSEGLSPDIITFTSLIHGLCTIGEWKKVEKLSFEMINRGIHPNAIFLNTIM 407

Query: 475 DWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ 534
           D L +   + EA     +I  +G  P       L D Y   G   ++++ LG + +    
Sbjct: 408 DSLCKEGRVLEAHDFFDQIIHVGVKPDVVSYTILIDGYCLDGKMDESIKLLGRMVSIG-- 465

Query: 535 MGPDD--FERIINGLLAGGFLQDA 556
           + PD+  +  ++NG    G + DA
Sbjct: 466 LRPDNVTYSALLNGYCKNGRVDDA 489



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 137/323 (42%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++ LI A+AK   L+ A     +M + G  P++VT T ++ +  KAG ++ A   F  + 
Sbjct: 298 FNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQMV 357

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           S G  PD   + S+I      G+ K    L   MI  GI  +      ++ S  + G V 
Sbjct: 358 SEGLSPDIITFTSLIHGLCTIGEWKKVEKLSFEMINRGIHPNAIFLNTIMDSLCKEGRVL 417

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A    + +     +P + S T+L++ Y   G  D++      M+ +G +PD+   ++++
Sbjct: 418 EAHDFFDQIIHVGVKPDVVSYTILIDGYCLDGKMDESIKLLGRMVSIGLRPDNVTYSALL 477

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             Y K   +D AL L  E+     +P   TY +++  L     +  A +   KI + G  
Sbjct: 478 NGYCKNGRVDDALALYREMFSKDVKPNAITYNIILHGLFHAGRVVAAREFYMKIVDSGIQ 537

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
                   +           +AL+    L +K+ Q+    F  +I GLL  G + DA+ +
Sbjct: 538 LGINTYNIVLGGLCENSFVDEALRMFQGLRSKEFQLEVRTFNIMIVGLLKVGRIGDAKSL 597

Query: 560 HGLMEAQGFAASERLKVALISSQ 582
              +   G      +   +I S 
Sbjct: 598 FSAILPSGLVPDAIIYGLMIQSH 620



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/351 (21%), Positives = 146/351 (41%), Gaps = 18/351 (5%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVR--------DYSKLIDAHAK 269
           LQP  + +  L+D         Y K+     +   F + VR         Y  L+  +A 
Sbjct: 221 LQPDVVTYSLLID--------YYCKIGRCTEARNIFDSMVRRGQNPDAYTYRTLLHGYAT 272

Query: 270 ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKV 329
           +  L D   +L  M ++GI  +     +L+  Y+K   LD+A  AF  +R  GF P+   
Sbjct: 273 KGALVDMHDLLALMIQDGIPLEDHVFNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVT 332

Query: 330 YNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389
           Y ++I     AG+ +  +S    M++ G+      + +L+      G+ +   +++  M 
Sbjct: 333 YTTVIDILCKAGRVEDAVSHFSQMVSEGLSPDIITFTSLIHGLCTIGEWKKVEKLSFEMI 392

Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD 449
                P       ++++  + G   +A   FD +I +G KPD      +I  Y     +D
Sbjct: 393 NRGIHPNAIFLNTIMDSLCKEGRVLEAHDFFDQIIHVGVKPDVVSYTILIDGYCLDGKMD 452

Query: 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP-PFKIQVSL 508
           +++ LL  +   G  P   TY+ L++   +   +++A  L  ++      P      + L
Sbjct: 453 ESIKLLGRMVSIGLRPDNVTYSALLNGYCKNGRVDDALALYREMFSKDVKPNAITYNIIL 512

Query: 509 CDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
             ++  AG    A +    +     Q+G + +  ++ GL    F+ +A R+
Sbjct: 513 HGLF-HAGRVVAAREFYMKIVDSGIQLGINTYNIVLGGLCENSFVDEALRM 562



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 112/240 (46%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ LID +  +  ++++ ++L +M   G+ PD VT + L++ Y K G +D A   +
Sbjct: 434 DVVSYTILIDGYCLDGKMDESIKLLGRMVSIGLRPDNVTYSALLNGYCKNGRVDDALALY 493

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             + S   +P+   YN ++    +AG+          ++ SGI+     Y  +L    + 
Sbjct: 494 REMFSKDVKPNAITYNIILHGLFHAGRVVAAREFYMKIVDSGIQLGINTYNIVLGGLCEN 553

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
             V  A ++   +R +EFQ  + +  +++    + G    A+S F  ++  G  PD    
Sbjct: 554 SFVDEALRMFQGLRSKEFQLEVRTFNIMIVGLLKVGRIGDAKSLFSAILPSGLVPDAIIY 613

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             MI ++ ++ LL+++  L L +EK+G      T   +V  L     +  A   L KI E
Sbjct: 614 GLMIQSHIEEGLLEESDELFLSMEKNGCTANSRTLNAIVRKLLEKGDVRRAGTYLTKIDE 673



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/264 (22%), Positives = 118/264 (44%), Gaps = 23/264 (8%)

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL 349
           P++++  ++++   K G +D+A   F  +   GF P+   YNS+I     A         
Sbjct: 137 PNVLSYNMVINGLFKEGEVDKAYTLFHEMLGQGFPPNIVTYNSVIDGLCKA--------- 187

Query: 350 VDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409
                   ++++E    A+L+     G +  A ++   M     QP + + +LL++ Y +
Sbjct: 188 ------QAMDKAE----AVLQQMFDKGQLEEAVRLLKKMSGGGLQPDVVTYSLLIDYYCK 237

Query: 410 AGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPAT 469
            G   +AR+ FD M+R G  PD     +++  Y  K  L    +LL  + +DG       
Sbjct: 238 IGRCTEARNIFDSMVRRGQNPDAYTYRTLLHGYATKGALVDMHDLLALMIQDGIPLEDHV 297

Query: 470 YTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLE 529
           + +L+    + + +++A     ++ + G +P      ++ D+  +AG  + A+    F +
Sbjct: 298 FNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVEDAVSH--FSQ 355

Query: 530 AKKEQMGPD--DFERIINGLLAGG 551
              E + PD   F  +I+GL   G
Sbjct: 356 MVSEGLSPDIITFTSLIHGLCTIG 379



 Score = 47.4 bits (111), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 40/195 (20%), Positives = 90/195 (46%), Gaps = 6/195 (3%)

Query: 211 LAEWKEL----LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDA 266
           LA ++E+    ++P+ I +  +L  L      +  +   + + +   Q  +  Y+ ++  
Sbjct: 490 LALYREMFSKDVKPNAITYNIILHGLFHAGRVVAAREFYMKIVDSGIQLGINTYNIVLGG 549

Query: 267 HAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPD 326
             + + +++A R+ + +       ++ T  +++    K G +  AK  F ++   G  PD
Sbjct: 550 LCENSFVDEALRMFQGLRSKEFQLEVRTFNIMIVGLLKVGRIGDAKSLFSAILPSGLVPD 609

Query: 327 KKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITN 386
             +Y  MI +++  G  +    L   M  +G   +     A++R   + GDVR AG  T 
Sbjct: 610 AIIYGLMIQSHIEEGLLEESDELFLSMEKNGCTANSRTLNAIVRKLLEKGDVRRAG--TY 667

Query: 387 IMRIEEFQPTLESCT 401
           + +I+E + ++E+ T
Sbjct: 668 LTKIDEKEYSVEAST 682



 Score = 38.5 bits (88), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 59/154 (38%), Gaps = 16/154 (10%)

Query: 448 LDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE----------------QLLG 491
           +DKA  L  E+   GF P   TY  ++D L + Q +++AE                +LL 
Sbjct: 155 VDKAYTLFHEMLGQGFPPNIVTYNSVIDGLCKAQAMDKAEAVLQQMFDKGQLEEAVRLLK 214

Query: 492 KISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGG 551
           K+S  G  P       L D Y + G   +A      +  + +      +  +++G    G
Sbjct: 215 KMSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRRGQNPDAYTYRTLLHGYATKG 274

Query: 552 FLQDAQRVHGLMEAQGFAASERLKVALISSQTFN 585
            L D   +  LM   G    + +   LI +   N
Sbjct: 275 ALVDMHDLLALMIQDGIPLEDHVFNILIRAYAKN 308


>gi|357122161|ref|XP_003562784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Brachypodium distachyon]
          Length = 791

 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 153/343 (44%), Gaps = 40/343 (11%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG------------- 306
           Y+ LI A ++ +   DA  + ++M  NG+ P +VT  V++H+YSK               
Sbjct: 179 YTALISALSRASRFRDAVAVFRRMVANGVCPALVTYNVVLHVYSKIAVPWKEVLALVDSM 238

Query: 307 -----NLDR------------------AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343
                 LDR                  A + F+ +R+ GF+PDK   NS++  Y  A + 
Sbjct: 239 RKDGIPLDRYTYNTLISCCRRRALYKEAAKVFDEMRAAGFEPDKVTLNSLLDVYGKARRY 298

Query: 344 KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403
              + ++  M   G   S   Y +L+ S+ + G +  A Q+   M ++  +P + + T L
Sbjct: 299 DEAIGVLKEMEQGGCPPSVVTYNSLISSYVKDGLLEEATQLKEEMEVKGIEPDVITYTTL 358

Query: 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGF 463
           V    +AG  D A   ++ M+R G KP+     ++I  +G +    + + +  E+   GF
Sbjct: 359 VSGLDRAGKIDAAIGTYNEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMIVFDEIRSAGF 418

Query: 464 EPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
            P   T+  L+   G+  L  E   +  ++ + G  P     VSL   Y+R G+  +A++
Sbjct: 419 VPDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQAME 478

Query: 524 ALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLME 564
              +    +  + PD   +  +++ L  GG  + A+++   ME
Sbjct: 479 I--YKRMIEAGIHPDISTYNAVLSALARGGRWEQAEKLFAEME 519



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 119/263 (45%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F+ +    + L+D + K    ++A  +LK+M + G  P +VT   L+  Y K G L+ A 
Sbjct: 278 FEPDKVTLNSLLDVYGKARRYDEAIGVLKEMEQGGCPPSVVTYNSLISSYVKDGLLEEAT 337

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           +  E +   G +PD   Y +++     AG+    +   + M+ +G + +   Y AL++  
Sbjct: 338 QLKEEMEVKGIEPDVITYTTLVSGLDRAGKIDAAIGTYNEMLRNGCKPNLCTYNALIKLH 397

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
              G       + + +R   F P + +   L+  +GQ G   +    F  M + G+ P+ 
Sbjct: 398 GVRGKFPEMMIVFDEIRSAGFVPDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPER 457

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               S+I++Y +  L D+A+ +   + + G  P  +TY  ++  L R     +AE+L  +
Sbjct: 458 DTYVSLISSYSRCGLFDQAMEIYKRMIEAGIHPDISTYNAVLSALARGGRWEQAEKLFAE 517

Query: 493 ISELGEAPPFKIQVSLCDMYARA 515
           +  L   P      SL   YA A
Sbjct: 518 MENLDSRPDELSYSSLLHAYANA 540



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 122/299 (40%), Gaps = 9/299 (3%)

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP-KLGMS 348
           PD    T L+   S+A     A   F  + ++G  P    YN ++  Y     P K  ++
Sbjct: 174 PDASAYTALISALSRASRFRDAVAVFRRMVANGVCPALVTYNVVLHVYSKIAVPWKEVLA 233

Query: 349 LVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYG 408
           LVD M   GI      Y  L+    +    + A ++ + MR   F+P   +   L++ YG
Sbjct: 234 LVDSMRKDGIPLDRYTYNTLISCCRRRALYKEAAKVFDEMRAAGFEPDKVTLNSLLDVYG 293

Query: 409 QAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPA 468
           +A   D+A      M + G  P      S+I++Y K  LL++A  L  E+E  G EP   
Sbjct: 294 KARRYDEAIGVLKEMEQGGCPPSVVTYNSLISSYVKDGLLEEATQLKEEMEVKGIEPDVI 353

Query: 469 TYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFL 528
           TYT LV  L R   I+ A     ++   G  P      +L  ++   G  K     + F 
Sbjct: 354 TYTTLVSGLDRAGKIDAAIGTYNEMLRNGCKPNLCTYNALIKLHGVRG--KFPEMMIVFD 411

Query: 529 EAKKEQMGPDDFERIINGLLA----GGFLQDAQRVHGLMEAQGFAASERLKVALISSQT 583
           E +     PD      N LLA     G   +   V   M+  G+       V+LISS +
Sbjct: 412 EIRSAGFVPDVV--TWNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPERDTYVSLISSYS 468



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/325 (20%), Positives = 135/325 (41%), Gaps = 35/325 (10%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA- 314
           +V  Y+ LI ++ K+  LE+A ++ ++M   GI PD++T T LV    +AG +D A    
Sbjct: 316 SVVTYNSLISSYVKDGLLEEATQLKEEMEVKGIEPDVITYTTLVSGLDRAGKIDAAIGTY 375

Query: 315 ----------------------------------FESLRSHGFQPDKKVYNSMIMAYVNA 340
                                             F+ +RS GF PD   +N+++  +   
Sbjct: 376 NEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMIVFDEIRSAGFVPDVVTWNTLLAVFGQN 435

Query: 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
           G       +   M  SG     + Y++L+ S+++CG    A +I   M      P + + 
Sbjct: 436 GLDTEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIHPDISTY 495

Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
             ++ A  + G  +QA   F  M  L  +PD+   +S++ AY     LDK  +L  ++  
Sbjct: 496 NAVLSALARGGRWEQAEKLFAEMENLDSRPDELSYSSLLHAYANAKKLDKMKSLSEDIYA 555

Query: 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKK 520
           +  E        LV    ++  +++ E+   ++     +    +  ++  +Y + G+ KK
Sbjct: 556 ERIESHNGLVKTLVLVNSKVNNLSDTEKAFLELRRRRCSLDINVLNAMISIYGKNGMVKK 615

Query: 521 ALQALGFLEAKKEQMGPDDFERIIN 545
             + L  ++     +    +  +++
Sbjct: 616 VEEILSLMKESSINLSTATYNSLMH 640



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 77/357 (21%), Positives = 141/357 (39%), Gaps = 39/357 (10%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           + N+  Y+ LI  H       +   +  ++   G VPD+VT   L+ ++ + G       
Sbjct: 384 KPNLCTYNALIKLHGVRGKFPEMMIVFDEIRSAGFVPDVVTWNTLLAVFGQNGLDTEVSG 443

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            F+ ++  G+ P++  Y S+I +Y   G     M +   MI +GI      Y A+L + A
Sbjct: 444 VFKEMKKSGYVPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIHPDISTYNAVLSALA 503

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD------------ 421
           + G    A ++   M   + +P   S + L+ AY  A   D+ +S  +            
Sbjct: 504 RGGRWEQAEKLFAEMENLDSRPDELSYSSLLHAYANAKKLDKMKSLSEDIYAERIESHNG 563

Query: 422 ---YMIRLGHKPDD--------------RCT------ASMIAAYGKKNLLDKALNLLLEL 458
               ++ +  K ++              RC+       +MI+ YGK  ++ K   +L  +
Sbjct: 564 LVKTLVLVNSKVNNLSDTEKAFLELRRRRCSLDINVLNAMISIYGKNGMVKKVEEILSLM 623

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
           ++       ATY  L+    RL    + E +L +I      P      ++   Y R G  
Sbjct: 624 KESSINLSTATYNSLMHMYSRLGDCEKCENILTEIKSSRARPDRYSYNTMIYAYGRKGQM 683

Query: 519 KKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASER 573
           K+A +   F E K   + PD   +   +   +A    ++A  +   M   G   +ER
Sbjct: 684 KEASRL--FSEMKCSGLVPDIVTYNIFVKSYVANSMFEEAIDLVRYMVTHGCKPNER 738



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/292 (21%), Positives = 121/292 (41%), Gaps = 35/292 (11%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  LI ++++    + A  I K+M E GI PDI T   ++   ++ G  ++A++ F  + 
Sbjct: 460 YVSLISSYSRCGLFDQAMEIYKRMIEAGIHPDISTYNAVLSALARGGRWEQAEKLFAEME 519

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER------------------- 360
           +   +PD+  Y+S++ AY NA +     SL + +    IE                    
Sbjct: 520 NLDSRPDELSYSSLLHAYANAKKLDKMKSLSEDIYAERIESHNGLVKTLVLVNSKVNNLS 579

Query: 361 -SEEIYL---------------ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
            +E+ +L               A++  + + G V+   +I ++M+      +  +   L+
Sbjct: 580 DTEKAFLELRRRRCSLDINVLNAMISIYGKNGMVKKVEEILSLMKESSINLSTATYNSLM 639

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
             Y + GD ++  +    +     +PD     +MI AYG+K  + +A  L  E++  G  
Sbjct: 640 HMYSRLGDCEKCENILTEIKSSRARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKCSGLV 699

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
           P   TY + V       +  EA  L+  +   G  P  +   ++   Y   G
Sbjct: 700 PDIVTYNIFVKSYVANSMFEEAIDLVRYMVTHGCKPNERTYNTILQEYCSHG 751



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 103/246 (41%), Gaps = 18/246 (7%)

Query: 260 YSKLIDAHAKENCLED---------AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           YS L+ A+A    L+          AERI    + NG+V        LV + SK  NL  
Sbjct: 530 YSSLLHAYANAKKLDKMKSLSEDIYAERI---ESHNGLV------KTLVLVNSKVNNLSD 580

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
            ++AF  LR      D  V N+MI  Y   G  K    ++ +M  S I  S   Y +L+ 
Sbjct: 581 TEKAFLELRRRRCSLDINVLNAMISIYGKNGMVKKVEEILSLMKESSINLSTATYNSLMH 640

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
            +++ GD      I   ++    +P   S   ++ AYG+ G   +A   F  M   G  P
Sbjct: 641 MYSRLGDCEKCENILTEIKSSRARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKCSGLVP 700

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           D       + +Y   ++ ++A++L+  +   G +P   TY  ++        I + +  +
Sbjct: 701 DIVTYNIFVKSYVANSMFEEAIDLVRYMVTHGCKPNERTYNTILQEYCSHGRIADGKSFI 760

Query: 491 GKISEL 496
             + EL
Sbjct: 761 SNLPEL 766



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 71/159 (44%), Gaps = 4/159 (2%)

Query: 242 KVAELV--LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLV 299
           KV E++  + E S   +   Y+ L+  +++    E  E IL ++  +   PD  +   ++
Sbjct: 615 KVEEILSLMKESSINLSTATYNSLMHMYSRLGDCEKCENILTEIKSSRARPDRYSYNTMI 674

Query: 300 HMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
           + Y + G +  A   F  ++  G  PD   YN  + +YV     +  + LV  M+T G +
Sbjct: 675 YAYGRKGQMKEASRLFSEMKCSGLVPDIVTYNIFVKSYVANSMFEEAIDLVRYMVTHGCK 734

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398
            +E  Y  +L+ +  C   R A   + I  + E  P + 
Sbjct: 735 PNERTYNTILQEY--CSHGRIADGKSFISNLPELHPGIS 771



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 2/160 (1%)

Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311
           S   NV +   +I  + K   ++  E IL  M E+ I     T   L+HMYS+ G+ ++ 
Sbjct: 594 SLDINVLN--AMISIYGKNGMVKKVEEILSLMKESSINLSTATYNSLMHMYSRLGDCEKC 651

Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
           +     ++S   +PD+  YN+MI AY   GQ K    L   M  SG+      Y   ++S
Sbjct: 652 ENILTEIKSSRARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKCSGLVPDIVTYNIFVKS 711

Query: 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAG 411
           +        A  +   M     +P   +   +++ Y   G
Sbjct: 712 YVANSMFEEAIDLVRYMVTHGCKPNERTYNTILQEYCSHG 751


>gi|115461420|ref|NP_001054310.1| Os04g0684500 [Oryza sativa Japonica Group]
 gi|113565881|dbj|BAF16224.1| Os04g0684500 [Oryza sativa Japonica Group]
          Length = 901

 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 133/307 (43%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS +I AH +   +E AE ++++M E+GI   I     ++H Y+   N ++    FE L+
Sbjct: 372 YSNIIHAHCQSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLK 431

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             GF+P    Y  ++  YV  G+    +S+   M + GI+ + + Y  L+  F    D  
Sbjct: 432 ECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFA 491

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  I   M     QP      LL+EA+ + G+ D+A    + M +   +P +R    +I
Sbjct: 492 NAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPII 551

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             Y     +  AL+ L  + + G  P   TY  L+  L R   +  A  +L K+S  G  
Sbjct: 552 EGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGIT 611

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P       +   YA +G   KA +    ++    ++    +E ++      G +Q A  V
Sbjct: 612 PNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAV 671

Query: 560 HGLMEAQ 566
              M  Q
Sbjct: 672 TREMSFQ 678



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 125/253 (49%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
            V  Y+ LI    +++ ++ A  +L KM+  GI P+  T T+++  Y+ +G++ +A E F
Sbjct: 578 TVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYF 637

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             ++  G + D  +Y +++ A   +G+ +  +++   M    I R+  IY  L+  +A+ 
Sbjct: 638 TKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARR 697

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           GDV  A  +   M+ +   P + + T  + A  +AGD  +A    + M+ +G KP+ +  
Sbjct: 698 GDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTY 757

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I  + + +L D+AL    E++  G +P  A+Y  LV  L     + E     G IS 
Sbjct: 758 TTLIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLVTSLLSRATVMEGSTYTGIISV 817

Query: 496 LGEAPPFKIQVSL 508
             E     + V L
Sbjct: 818 CREMSENDLTVDL 830



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 91/414 (21%), Positives = 173/414 (41%), Gaps = 55/414 (13%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAE----LVLSEE----SFQTNVRDYSKLIDAHAK 269
            +PS I +  LL+        LY K+ +    L +S+E      + N + YS LI+    
Sbjct: 435 FKPSIISYGCLLN--------LYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIH 486

Query: 270 ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKV 329
            +   +A  I ++M  +G+ PD     +L+  + K GN+DRA    E ++    QP  + 
Sbjct: 487 LHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRA 546

Query: 330 YNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389
           +  +I  Y  AG  K  +  +D+M  SG   +   Y AL+    +   V+ A  + + M 
Sbjct: 547 FRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMS 606

Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD 449
           I    P   + T+++  Y  +GD  +A   F  +   G K D     +++ A  K   + 
Sbjct: 607 IAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQ 666

Query: 450 KAL-----------------------------------NLLLELEKDGFEPGPATYTVLV 474
            AL                                   +L+ ++++DG  P   TYT  +
Sbjct: 667 SALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYI 726

Query: 475 DWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ 534
           +   +   +  AE+++ ++ ++G  P  K   +L   +AR  +  +AL+   F E K   
Sbjct: 727 NACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKC--FEEMKLAG 784

Query: 535 MGPDD--FERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNR 586
           + PD+  +  ++  LL+   + +     G++      +   L V L ++  ++R
Sbjct: 785 LKPDEASYHCLVTSLLSRATVMEGSTYTGIISVCREMSENDLTVDLRTAVHWSR 838



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 131/320 (40%), Gaps = 39/320 (12%)

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           +++  Y+K G+   A+  FE++R+ G +P+  V+ S++ AY  A   +  +S V+ M + 
Sbjct: 269 LMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSE 328

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAG--------------------------QITNIMRI 390
           G+E +   Y  L+  FA+  D + A                           Q  N+ R 
Sbjct: 329 GLELTIVTYSILISGFAKINDSQSADNLFKEAKTKLSSLNGIIYSNIIHAHCQSGNMERA 388

Query: 391 EEFQPTLESCTL---------LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441
           EE    +E   +         ++  Y    + ++    F+ +   G KP       ++  
Sbjct: 389 EELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNL 448

Query: 442 YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
           Y K   + KAL++  E+E  G +    TY++L++    L     A  +  ++   G  P 
Sbjct: 449 YVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPD 508

Query: 502 FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQDAQRV 559
             I   L + + + G   +A+  L   + +KE+M P +  F  II G    G ++ A   
Sbjct: 509 RAIYNLLIEAFCKMGNMDRAICILE--KMQKERMQPSNRAFRPIIEGYAVAGDMKSALDT 566

Query: 560 HGLMEAQGFAASERLKVALI 579
             LM   G   +     ALI
Sbjct: 567 LDLMRRSGCVPTVMTYNALI 586



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/246 (20%), Positives = 107/246 (43%), Gaps = 4/246 (1%)

Query: 303 SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE 362
           S+  N      AFE +     +P ++ +  MI+ Y   G      +  + M   GIE + 
Sbjct: 244 SRPDNWQAVVSAFERIP----KPSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNA 299

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
            ++ +L+ ++A   D+RGA      M+ E  + T+ + ++L+  + +  D   A + F  
Sbjct: 300 FVFTSLVHAYAVARDMRGALSCVEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKE 359

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
                   +    +++I A+ +   +++A  L+ E+E+DG +     Y  ++     +Q 
Sbjct: 360 AKTKLSSLNGIIYSNIIHAHCQSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQN 419

Query: 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFER 542
            N+   +  ++ E G  P       L ++Y + G   KAL     +E+   +     +  
Sbjct: 420 ENKCLVVFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSM 479

Query: 543 IINGLL 548
           +ING +
Sbjct: 480 LINGFI 485


>gi|222636130|gb|EEE66262.1| hypothetical protein OsJ_22447 [Oryza sativa Japonica Group]
          Length = 876

 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 146/326 (44%), Gaps = 8/326 (2%)

Query: 244 AELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS 303
           A L LS + +   +R       + A+ +  E   R+  ++ ++G++PD VT   ++  Y 
Sbjct: 27  ARLALSPKCYNFALR-------SLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYC 79

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363
           K G+L  A   F  L   G +P+    N++++ Y   G+ +    L  MM   G +R+E 
Sbjct: 80  KEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEY 139

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
            Y  L++       VR A  +  +M+ +   P + + T L+    ++G    AR  FD M
Sbjct: 140 SYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAM 199

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483
            + G  P      +MI  Y K   ++ AL +   +EK+G  P   TY  L+  L   Q  
Sbjct: 200 PQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCD-QKT 258

Query: 484 NEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERI 543
            EAE+LL    + G  P      +L + Y  A     AL+    + + K ++    F ++
Sbjct: 259 EEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKL 318

Query: 544 INGLLAGGFLQDAQRVHGLMEAQGFA 569
           IN L+    L++A+ +   + A G  
Sbjct: 319 INSLIKKDRLKEAKELLNEISANGLV 344



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 116/247 (46%), Gaps = 3/247 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ L+     E+  ++A R+ + M +NG+ PD     VL     KAG   RA+EA+
Sbjct: 416 NVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAG---RAEEAY 472

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G    K  Y ++I  +  AG      +L++ MI  G       Y  LL +  + 
Sbjct: 473 SFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQ 532

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
             +  A  I + M +   + T+ + T+L++   + G  D A+  ++ M   GHKP     
Sbjct: 533 KRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTY 592

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
              I +Y K+  L+ A +L+L++E++G  P   TY +L+D  G +  I+ A   L ++  
Sbjct: 593 TVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVG 652

Query: 496 LGEAPPF 502
               P +
Sbjct: 653 ASCEPNY 659



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 171/379 (45%), Gaps = 24/379 (6%)

Query: 202 EKEEDPSPLLAE-WKELLQPSRIDWINLL----------DRLREQNTQLYFKVAELVLSE 250
           +K E+   LL    KE   P+ + + NL+          D LR +N  +  K        
Sbjct: 256 QKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKC------- 308

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
              + +++ + KLI++  K++ L++A+ +L +++ NG+VP+++T T ++  Y K+G +D 
Sbjct: 309 ---KLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDI 365

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A E  + +   G QP+   YNS++   V   +    M+L+  M   GI  +   Y  LL+
Sbjct: 366 ALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQ 425

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
                 D   A ++  +M     +P   +  +L +A  +AG  ++A   + +++R G   
Sbjct: 426 GQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEA---YSFIVRKGVAL 482

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
                 ++I  + K    D A  L+  +  +G  P   TY+VL+  L + + +NEA  +L
Sbjct: 483 TKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPIL 542

Query: 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAG 550
            ++S  G          L D   R G    A +    + +   +     +   IN     
Sbjct: 543 DQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKE 602

Query: 551 GFLQDAQRVHGLMEAQGFA 569
           G L+DA+ +   ME +G A
Sbjct: 603 GRLEDAEDLILKMEREGVA 621



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 76/343 (22%), Positives = 141/343 (41%), Gaps = 37/343 (10%)

Query: 243 VAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMY 302
           V  L++  +    NVR ++ LI    K   + DA  +   M +NG+VP ++T   ++  Y
Sbjct: 159 VLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGY 218

Query: 303 SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM--------------------------- 335
           SK G ++ A +  E +  +G  PD   YN++I                            
Sbjct: 219 SKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKTEEAEELLNNAVKEGFTPTVV 278

Query: 336 -------AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIM 388
                   Y  A +    + + + M++S  +   +++  L+ S  +   ++ A ++ N +
Sbjct: 279 TFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEI 338

Query: 389 RIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLL 448
                 P + + T +++ Y ++G  D A      M R G +P+     S++    K   L
Sbjct: 339 SANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKL 398

Query: 449 DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSL 508
            KA+ LL +++KDG  P   TYT L+         + A +L   + + G  P       L
Sbjct: 399 HKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVL 458

Query: 509 CDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGG 551
            D   +AG   +A +A  F+  K   +    +  +I+G    G
Sbjct: 459 TDALCKAG---RAEEAYSFIVRKGVALTKVYYTTLIDGFSKAG 498



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 106/279 (37%), Gaps = 51/279 (18%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           ++    + +   Y+  I+++ KE  LEDAE ++ KM   G+ PD+VT  +L+      G 
Sbjct: 580 MTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGY 639

Query: 308 LDRAKEAF---------------------------------------------------E 316
           +DRA                                                       E
Sbjct: 640 IDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLE 699

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
            +  HG  P    Y+S+I  +  AG+ +    L+D M   G+  +E+IY  L++      
Sbjct: 700 RMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTK 759

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
               A    +IM    FQP LES  LLV      GD ++ +S F  ++ LG+  D+    
Sbjct: 760 FFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWK 819

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
            +     K   +D    +L  +EK        TY ++ +
Sbjct: 820 ILNDGLLKAGYVDICFQMLSIMEKRYCCISSQTYALVTN 858



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 139/328 (42%), Gaps = 7/328 (2%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           Q N   Y+ LI       C+  A  +   M  +G  P++   T L+    K+G +  A+ 
Sbjct: 135 QRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARL 194

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            F+++  +G  P    YN+MI+ Y   G+    + + ++M  +G    +  Y  L+    
Sbjct: 195 LFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLC 254

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
                  A ++ N    E F PT+ + T L+  Y  A   D A    + M+    K D +
Sbjct: 255 D-QKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQ 313

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
               +I +  KK+ L +A  LL E+  +G  P   TYT ++D   +   ++ A ++L  +
Sbjct: 314 VFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMM 373

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFL-EAKKEQMGPD--DFERIINGLLAG 550
              G  P      SL  MY     +KK  +A+  L + +K+ + P+   +  ++ G    
Sbjct: 374 ERDGCQPNAWTYNSL--MYGLVK-DKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDE 430

Query: 551 GFLQDAQRVHGLMEAQGFAASERLKVAL 578
               +A R+  +ME  G    E     L
Sbjct: 431 HDFDNAFRLFEMMEQNGLKPDEHAYAVL 458



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 71/317 (22%), Positives = 129/317 (40%), Gaps = 22/317 (6%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +S    +  +  Y+ LID   +E   + A+R+  +M  +G  P   T TV ++ Y K G 
Sbjct: 545 MSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGR 604

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L+ A++    +   G  PD   YN +I    + G      S +  M+ +  E +   Y  
Sbjct: 605 LEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCL 664

Query: 368 LLR-------SFAQCGDVRG---------AGQITNIMRIEEFQPTLESCTLLVEAYGQAG 411
           LL+       ++ +  D  G           Q+   M      PT+ + + L+  + +AG
Sbjct: 665 LLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAG 724

Query: 412 DPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYT 471
             ++A    D+M   G  P++     +I         +KAL+ +  + + GF+P   +Y 
Sbjct: 725 RLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYR 784

Query: 472 VLVDWLGRLQLINEAEQLLGKISELG---EAPPFKIQVSLCDMYARAGIEKKALQALGFL 528
           +LV  L       + + L   + ELG   +   +KI   L D   +AG      Q L  +
Sbjct: 785 LLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKI---LNDGLLKAGYVDICFQMLSIM 841

Query: 529 EAKKEQMGPDDFERIIN 545
           E +   +    +  + N
Sbjct: 842 EKRYCCISSQTYALVTN 858



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/297 (19%), Positives = 119/297 (40%), Gaps = 26/297 (8%)

Query: 311 AKEAFESLRSHG---FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           + +A +++R  G        K YN  + +       +    +   ++  G+      Y  
Sbjct: 14  SADAIQAIRRTGSARLALSPKCYNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNT 73

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           +++S+ + GD+  A +   ++     +P   +C  LV  Y + G+  +A   F  M  +G
Sbjct: 74  MIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMG 133

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            + ++     +I        + KAL L L +++DG  P    +T L+  L +   + +A 
Sbjct: 134 CQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDAR 193

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF------- 540
            L   + + G  P      ++   Y++ G    AL+    +E  K    PDD+       
Sbjct: 194 LLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELME--KNGCHPDDWTYNTLIY 251

Query: 541 ----------ERIINGLLAGGF----LQDAQRVHGLMEAQGFAASERLKVALISSQT 583
                     E ++N  +  GF    +     ++G   A+ F  + R+K  ++SS+ 
Sbjct: 252 GLCDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKC 308


>gi|125592120|gb|EAZ32470.1| hypothetical protein OsJ_16686 [Oryza sativa Japonica Group]
          Length = 879

 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 133/307 (43%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS +I AH +   +E AE ++++M E+GI   I     ++H Y+   N ++    FE L+
Sbjct: 350 YSNIIHAHCQSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLK 409

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             GF+P    Y  ++  YV  G+    +S+   M + GI+ + + Y  L+  F    D  
Sbjct: 410 ECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFA 469

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  I   M     QP      LL+EA+ + G+ D+A    + M +   +P +R    +I
Sbjct: 470 NAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPII 529

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             Y     +  AL+ L  + + G  P   TY  L+  L R   +  A  +L K+S  G  
Sbjct: 530 EGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGIT 589

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P       +   YA +G   KA +    ++    ++    +E ++      G +Q A  V
Sbjct: 590 PNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAV 649

Query: 560 HGLMEAQ 566
              M  Q
Sbjct: 650 TREMSFQ 656



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 125/253 (49%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
            V  Y+ LI    +++ ++ A  +L KM+  GI P+  T T+++  Y+ +G++ +A E F
Sbjct: 556 TVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYF 615

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             ++  G + D  +Y +++ A   +G+ +  +++   M    I R+  IY  L+  +A+ 
Sbjct: 616 TKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARR 675

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           GDV  A  +   M+ +   P + + T  + A  +AGD  +A    + M+ +G KP+ +  
Sbjct: 676 GDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTY 735

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I  + + +L D+AL    E++  G +P  A+Y  LV  L     + E     G IS 
Sbjct: 736 TTLIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLVTSLLSRATVMEGSTYTGIISV 795

Query: 496 LGEAPPFKIQVSL 508
             E     + V L
Sbjct: 796 CREMSENDLTVDL 808



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 91/414 (21%), Positives = 173/414 (41%), Gaps = 55/414 (13%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAE----LVLSEE----SFQTNVRDYSKLIDAHAK 269
            +PS I +  LL+        LY K+ +    L +S+E      + N + YS LI+    
Sbjct: 413 FKPSIISYGCLLN--------LYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIH 464

Query: 270 ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKV 329
            +   +A  I ++M  +G+ PD     +L+  + K GN+DRA    E ++    QP  + 
Sbjct: 465 LHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRA 524

Query: 330 YNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389
           +  +I  Y  AG  K  +  +D+M  SG   +   Y AL+    +   V+ A  + + M 
Sbjct: 525 FRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMS 584

Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD 449
           I    P   + T+++  Y  +GD  +A   F  +   G K D     +++ A  K   + 
Sbjct: 585 IAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQ 644

Query: 450 KAL-----------------------------------NLLLELEKDGFEPGPATYTVLV 474
            AL                                   +L+ ++++DG  P   TYT  +
Sbjct: 645 SALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYI 704

Query: 475 DWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ 534
           +   +   +  AE+++ ++ ++G  P  K   +L   +AR  +  +AL+   F E K   
Sbjct: 705 NACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKC--FEEMKLAG 762

Query: 535 MGPDD--FERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNR 586
           + PD+  +  ++  LL+   + +     G++      +   L V L ++  ++R
Sbjct: 763 LKPDEASYHCLVTSLLSRATVMEGSTYTGIISVCREMSENDLTVDLRTAVHWSR 816



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 131/320 (40%), Gaps = 39/320 (12%)

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           +++  Y+K G+   A+  FE++R+ G +P+  V+ S++ AY  A   +  +S V+ M + 
Sbjct: 247 LMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSE 306

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAG--------------------------QITNIMRI 390
           G+E +   Y  L+  FA+  D + A                           Q  N+ R 
Sbjct: 307 GLELTIVTYSILISGFAKINDSQSADNLFKEAKTKLSSLNGIIYSNIIHAHCQSGNMERA 366

Query: 391 EEFQPTLESCTL---------LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441
           EE    +E   +         ++  Y    + ++    F+ +   G KP       ++  
Sbjct: 367 EELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNL 426

Query: 442 YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
           Y K   + KAL++  E+E  G +    TY++L++    L     A  +  ++   G  P 
Sbjct: 427 YVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPD 486

Query: 502 FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQDAQRV 559
             I   L + + + G   +A+  L   + +KE+M P +  F  II G    G ++ A   
Sbjct: 487 RAIYNLLIEAFCKMGNMDRAICILE--KMQKERMQPSNRAFRPIIEGYAVAGDMKSALDT 544

Query: 560 HGLMEAQGFAASERLKVALI 579
             LM   G   +     ALI
Sbjct: 545 LDLMRRSGCVPTVMTYNALI 564



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/246 (20%), Positives = 107/246 (43%), Gaps = 4/246 (1%)

Query: 303 SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE 362
           S+  N      AFE +     +P ++ +  MI+ Y   G      +  + M   GIE + 
Sbjct: 222 SRPDNWQAVVSAFERIP----KPSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNA 277

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
            ++ +L+ ++A   D+RGA      M+ E  + T+ + ++L+  + +  D   A + F  
Sbjct: 278 FVFTSLVHAYAVARDMRGALSCVEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKE 337

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
                   +    +++I A+ +   +++A  L+ E+E+DG +     Y  ++     +Q 
Sbjct: 338 AKTKLSSLNGIIYSNIIHAHCQSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQN 397

Query: 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFER 542
            N+   +  ++ E G  P       L ++Y + G   KAL     +E+   +     +  
Sbjct: 398 ENKCLVVFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSM 457

Query: 543 IINGLL 548
           +ING +
Sbjct: 458 LINGFI 463


>gi|222629097|gb|EEE61229.1| hypothetical protein OsJ_15269 [Oryza sativa Japonica Group]
          Length = 855

 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 145/320 (45%), Gaps = 22/320 (6%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           + F  +   YSK+I        +E A  + ++M   G+ PD+ T T+L+  + KAG +++
Sbjct: 282 KGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQ 341

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A+  FE +RS G  P    Y ++I AY+ A Q      +   M+ +G   ++  Y AL+ 
Sbjct: 342 AQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVD 401

Query: 371 SFAQCGDVRGAGQI------TNIMRIEEF----------QPTLESCTLLVEAYGQAGDPD 414
              + G++  A ++      T+     +F           P + +   LV+   +A   D
Sbjct: 402 GLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVD 461

Query: 415 QARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
            A    D M+  G +P+     ++I  + K   +D A  + L++ K G+ P   TYT L+
Sbjct: 462 HAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLI 521

Query: 475 DWL---GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK 531
           D +   GRL L   A ++L ++ +    P      ++ D   R G  +KAL+ L  +E K
Sbjct: 522 DRMFKDGRLDL---AMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEK 578

Query: 532 KEQMGPDDFERIINGLLAGG 551
                   +  +I+GL   G
Sbjct: 579 GCSPNVVTYTALIDGLGKAG 598



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 125/287 (43%), Gaps = 16/287 (5%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
            V  Y+ LI A+ K   +  A  I  +M + G  P+ VT   LV    KAGN+ +A E +
Sbjct: 357 TVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVY 416

Query: 316 ESLRS----------------HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
             L                  H   P+   Y +++     A +      L+D M++SG E
Sbjct: 417 AKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCE 476

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
            +  +Y AL+  F + G +  A ++   M    + P++ + T L++   + G  D A   
Sbjct: 477 PNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKV 536

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
              M++    P+     +MI    +    +KAL LL  +E+ G  P   TYT L+D LG+
Sbjct: 537 LSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGK 596

Query: 480 LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALG 526
              I+ +  L  ++S  G +P +     L +    AG+  KA   LG
Sbjct: 597 AGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLG 643



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 83/368 (22%), Positives = 150/368 (40%), Gaps = 30/368 (8%)

Query: 225 WINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMN 284
           +  L+      ++  YF   +      +   NV  Y  L+D   K + ++ A  +L  M 
Sbjct: 416 YAKLIGTSDSADSDFYFPCED----RHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAML 471

Query: 285 ENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPK 344
            +G  P+ +    L+  + KAG +D A+E F  +   G+ P    Y S+I      G+  
Sbjct: 472 SSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLD 531

Query: 345 LGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
           L M ++  M+      +   Y A++    + G+   A ++ ++M  +   P + + T L+
Sbjct: 532 LAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALI 591

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
           +  G+AG  D +   F  M R G  P+      +I       LLDKA  LL E+++  + 
Sbjct: 592 DGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWP 651

Query: 465 PGPATYTVLV-----DWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEK 519
                Y   +      ++  L ++ E E         G  P   +   L D +++AG  +
Sbjct: 652 KYLQGYRCAIQGFSKSFIASLGILEEME-------SYGTVPIAPVYGMLIDCFSKAGRLE 704

Query: 520 KALQALGFLEAKKEQM--------GPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAAS 571
            A      +E  KE M          D +  +I  L     +++A R++  M  +GF   
Sbjct: 705 IA------MELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPE 758

Query: 572 ERLKVALI 579
             + V LI
Sbjct: 759 LSVFVCLI 766



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 71/334 (21%), Positives = 131/334 (39%), Gaps = 32/334 (9%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++  E F+ +    + +I    + +  ++A   L +M  N  +P++VT   L+  + K  
Sbjct: 97  MIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKK 156

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            L   K     + + G  P+  ++NS++ +Y N         L++ M T G      +Y 
Sbjct: 157 QLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYN 216

Query: 367 ALLRSFAQ----------------CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410
             + S                    G++  A  + N + +  F   L             
Sbjct: 217 IFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCG----------V 266

Query: 411 GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATY 470
           G  D+A      M+R G  PD    + +I        ++KA  L  E++  G  P   TY
Sbjct: 267 GKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTY 326

Query: 471 TVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALG-FLE 529
           T+L+D   +  LI +A+ L  ++  +G +P      +L   Y +A   K+  QA   F  
Sbjct: 327 TILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKA---KQVPQANDIFHR 383

Query: 530 AKKEQMGPDD--FERIINGLLAGGFLQDAQRVHG 561
                  P+D  +  +++GL   G +  A  V+ 
Sbjct: 384 MVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYA 417



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/305 (23%), Positives = 121/305 (39%), Gaps = 20/305 (6%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           L+ AE+I  +M     V + V            G  D+A +  + +   GF PD   Y+ 
Sbjct: 234 LDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSK 293

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I    +A + +    L   M   G+      Y  L+ SF + G +  A  +   MR   
Sbjct: 294 VITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVG 353

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             PT+ + T L+ AY +A    QA   F  M+  G +P+D    +++    K   + KA 
Sbjct: 354 CSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAF 413

Query: 453 NLLLEL----------------EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
            +  +L                ++    P   TY  LVD L +   ++ A +LL  +   
Sbjct: 414 EVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSS 473

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQ 554
           G  P   +  +L D + +AG    A +   FL+  K    P    +  +I+ +   G L 
Sbjct: 474 GCEPNHIVYDALIDGFCKAGKIDSAQEV--FLQMTKCGYLPSVHTYTSLIDRMFKDGRLD 531

Query: 555 DAQRV 559
            A +V
Sbjct: 532 LAMKV 536



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 77/384 (20%), Positives = 139/384 (36%), Gaps = 64/384 (16%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+   +    ++   R+ K+M+E+G   D  T     H   K G   R  +A + + 
Sbjct: 43  YNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEG---RWADALDMIE 99

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
              F+ D  +   MI   + A      MS +  M  +    +   Y  LL  F +   + 
Sbjct: 100 REDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLG 159

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD-------- 431
              +I N+M  E   P       LV +Y    D   A    + M   G  P         
Sbjct: 160 WCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFI 219

Query: 432 ------------------DRCTASMIAA---YGKKNL------------LDKALNLLLEL 458
                             ++    M+AA     K N+             DKA  L+ E+
Sbjct: 220 GSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEM 279

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
            + GF P  +TY+ ++ +L     + +A  L  ++  +G  P       L D + +AG+ 
Sbjct: 280 MRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLI 339

Query: 519 KKA------LQALG--------------FLEAKKEQMGPDDFERIINGLLAGGFLQDAQR 558
           ++A      ++++G              +L+AK+     D F R+++       +     
Sbjct: 340 EQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGAL 399

Query: 559 VHGLMEAQGFAASERLKVALISSQ 582
           V GL +A   + +  +   LI + 
Sbjct: 400 VDGLCKAGNISKAFEVYAKLIGTS 423



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 101/238 (42%), Gaps = 37/238 (15%)

Query: 215 KELLQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCL 273
           K+   P+ + +  ++D L R   ++   K+  L + E+    NV  Y+ LID   K   +
Sbjct: 542 KDSCTPNVVTYTAMIDGLCRIGESEKALKLLSL-MEEKGCSPNVVTYTALIDGLGKAGKI 600

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK--------------------- 312
           + +  +  +M+  G  P+ VT  VL++    AG LD+A+                     
Sbjct: 601 DLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCA 660

Query: 313 -EAF-----------ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV-DMM-ITSGI 358
            + F           E + S+G  P   VY  +I  +  AG+ ++ M L  +MM + S +
Sbjct: 661 IQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSV 720

Query: 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
           +   ++Y +L+++      V  A ++ + M    F P L     L++   +    D+A
Sbjct: 721 KTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEA 778



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 85/194 (43%), Gaps = 3/194 (1%)

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A ++ + L+  G++P K  YN+++    +AGQ  LG  +   M  SG     + +     
Sbjct: 24  AGDSEDPLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGF--CMDRFTVGCF 81

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
           + A C + R A  +  I R E+F+     CT ++    +A   D+A S    M      P
Sbjct: 82  AHALCKEGRWADALDMIER-EDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIP 140

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           +     ++++ + KK  L     ++  +  +G  P P+ +  LV      +    A +LL
Sbjct: 141 NVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLL 200

Query: 491 GKISELGEAPPFKI 504
            +++  G  P + +
Sbjct: 201 NRMTTCGCPPGYVV 214


>gi|38344241|emb|CAE02059.2| OJ991113_30.18 [Oryza sativa Japonica Group]
          Length = 736

 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 145/320 (45%), Gaps = 22/320 (6%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           + F  +   YSK+I        +E A  + ++M   G+ PD+ T T+L+  + KAG +++
Sbjct: 217 KGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQ 276

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A+  FE +RS G  P    Y ++I AY+ A Q      +   M+ +G   ++  Y AL+ 
Sbjct: 277 AQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVD 336

Query: 371 SFAQCGDVRGAGQI------TNIMRIEEF----------QPTLESCTLLVEAYGQAGDPD 414
              + G++  A ++      T+     +F           P + +   LV+   +A   D
Sbjct: 337 GLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVD 396

Query: 415 QARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
            A    D M+  G +P+     ++I  + K   +D A  + L++ K G+ P   TYT L+
Sbjct: 397 HAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLI 456

Query: 475 DWL---GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK 531
           D +   GRL L   A ++L ++ +    P      ++ D   R G  +KAL+ L  +E K
Sbjct: 457 DRMFKDGRLDL---AMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEK 513

Query: 532 KEQMGPDDFERIINGLLAGG 551
                   +  +I+GL   G
Sbjct: 514 GCSPNVVTYTALIDGLGKAG 533



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 125/287 (43%), Gaps = 16/287 (5%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
            V  Y+ LI A+ K   +  A  I  +M + G  P+ VT   LV    KAGN+ +A E +
Sbjct: 292 TVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVY 351

Query: 316 ESLRS----------------HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
             L                  H   P+   Y +++     A +      L+D M++SG E
Sbjct: 352 AKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCE 411

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
            +  +Y AL+  F + G +  A ++   M    + P++ + T L++   + G  D A   
Sbjct: 412 PNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKV 471

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
              M++    P+     +MI    +    +KAL LL  +E+ G  P   TYT L+D LG+
Sbjct: 472 LSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGK 531

Query: 480 LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALG 526
              I+ +  L  ++S  G +P +     L +    AG+  KA   LG
Sbjct: 532 AGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLG 578



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 83/368 (22%), Positives = 150/368 (40%), Gaps = 30/368 (8%)

Query: 225 WINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMN 284
           +  L+      ++  YF   +      +   NV  Y  L+D   K + ++ A  +L  M 
Sbjct: 351 YAKLIGTSDSADSDFYFPCED----RHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAML 406

Query: 285 ENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPK 344
            +G  P+ +    L+  + KAG +D A+E F  +   G+ P    Y S+I      G+  
Sbjct: 407 SSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLD 466

Query: 345 LGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
           L M ++  M+      +   Y A++    + G+   A ++ ++M  +   P + + T L+
Sbjct: 467 LAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALI 526

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
           +  G+AG  D +   F  M R G  P+      +I       LLDKA  LL E+++  + 
Sbjct: 527 DGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWP 586

Query: 465 PGPATYTVLV-----DWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEK 519
                Y   +      ++  L ++ E E         G  P   +   L D +++AG  +
Sbjct: 587 KYLQGYRCAIQGFSKSFIASLGILEEMES-------YGTVPIAPVYGMLIDCFSKAGRLE 639

Query: 520 KALQALGFLEAKKEQM--------GPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAAS 571
            A      +E  KE M          D +  +I  L     +++A R++  M  +GF   
Sbjct: 640 IA------MELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPE 693

Query: 572 ERLKVALI 579
             + V LI
Sbjct: 694 LSVFVCLI 701



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 71/334 (21%), Positives = 131/334 (39%), Gaps = 32/334 (9%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++  E F+ +    + +I    + +  ++A   L +M  N  +P++VT   L+  + K  
Sbjct: 32  MIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKK 91

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            L   K     + + G  P+  ++NS++ +Y N         L++ M T G      +Y 
Sbjct: 92  QLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYN 151

Query: 367 ALLRSFAQ----------------CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410
             + S                    G++  A  + N + +  F   L             
Sbjct: 152 IFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCG----------V 201

Query: 411 GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATY 470
           G  D+A      M+R G  PD    + +I        ++KA  L  E++  G  P   TY
Sbjct: 202 GKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTY 261

Query: 471 TVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALG-FLE 529
           T+L+D   +  LI +A+ L  ++  +G +P      +L   Y +A   K+  QA   F  
Sbjct: 262 TILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKA---KQVPQANDIFHR 318

Query: 530 AKKEQMGPDD--FERIINGLLAGGFLQDAQRVHG 561
                  P+D  +  +++GL   G +  A  V+ 
Sbjct: 319 MVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYA 352



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/305 (23%), Positives = 121/305 (39%), Gaps = 20/305 (6%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           L+ AE+I  +M     V + V            G  D+A +  + +   GF PD   Y+ 
Sbjct: 169 LDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSK 228

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I    +A + +    L   M   G+      Y  L+ SF + G +  A  +   MR   
Sbjct: 229 VITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVG 288

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             PT+ + T L+ AY +A    QA   F  M+  G +P+D    +++    K   + KA 
Sbjct: 289 CSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAF 348

Query: 453 NLLLEL----------------EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
            +  +L                ++    P   TY  LVD L +   ++ A +LL  +   
Sbjct: 349 EVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSS 408

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQ 554
           G  P   +  +L D + +AG    A +   FL+  K    P    +  +I+ +   G L 
Sbjct: 409 GCEPNHIVYDALIDGFCKAGKIDSAQEV--FLQMTKCGYLPSVHTYTSLIDRMFKDGRLD 466

Query: 555 DAQRV 559
            A +V
Sbjct: 467 LAMKV 471



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 101/238 (42%), Gaps = 37/238 (15%)

Query: 215 KELLQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCL 273
           K+   P+ + +  ++D L R   ++   K+  L + E+    NV  Y+ LID   K   +
Sbjct: 477 KDSCTPNVVTYTAMIDGLCRIGESEKALKLLSL-MEEKGCSPNVVTYTALIDGLGKAGKI 535

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK--------------------- 312
           + +  +  +M+  G  P+ VT  VL++    AG LD+A+                     
Sbjct: 536 DLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCA 595

Query: 313 -EAF-----------ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV-DMM-ITSGI 358
            + F           E + S+G  P   VY  +I  +  AG+ ++ M L  +MM + S +
Sbjct: 596 IQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSV 655

Query: 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
           +   ++Y +L+++      V  A ++ + M    F P L     L++   +    D+A
Sbjct: 656 KTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEA 713


>gi|356552005|ref|XP_003544362.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g09680-like [Glycine max]
          Length = 509

 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 117/254 (46%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           V+  E    +V  +S LI+   KE  L++   +  +M   G+VP+ VT TVL+    K G
Sbjct: 202 VMESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGKGLVPNGVTFTVLIDGQCKGG 261

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            +D A + F+ + + G +PD   YN++I      G  K    LV+ M  SG+      + 
Sbjct: 262 KVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMSASGLRPDRITFT 321

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+    + GD+  A +I   M  E  +    + T+L+    + G    A      M+  
Sbjct: 322 TLIDGCCKYGDMESALEIKRRMVEEGIELDDVAFTVLISGLCRDGRVHDAERMLRDMLSA 381

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G KPDD     ++  + KK  +     LL E++ DG  PG  TY  L++ L +   +  A
Sbjct: 382 GFKPDDPTYTMVVDCFCKKGNVXMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQVKNA 441

Query: 487 EQLLGKISELGEAP 500
           + LL  +  +G AP
Sbjct: 442 KMLLDAMLNVGVAP 455



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 117/281 (41%), Gaps = 3/281 (1%)

Query: 244 AELVLSE---ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
           A LV  E      +  V  ++ LI    K   +E+  R+   M    + PD+ T + L++
Sbjct: 161 ARLVFDEIPKRGLRPTVVSFNTLISGCCKAGAVEEGFRLKGVMESERVCPDVFTFSALIN 220

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
              K G LD     F+ +   G  P+   +  +I      G+  L +    MM+  G+  
Sbjct: 221 GLCKEGRLDEGSLLFDEMCGKGLVPNGVTFTVLIDGQCKGGKVDLALKNFQMMLAQGVRP 280

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
               Y AL+    + GD++ A ++ N M     +P   + T L++   + GD + A    
Sbjct: 281 DLVTYNALINGLCKVGDLKEARRLVNEMSASGLRPDRITFTTLIDGCCKYGDMESALEIK 340

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
             M+  G + DD     +I+   +   +  A  +L ++   GF+P   TYT++VD   + 
Sbjct: 341 RRMVEEGIELDDVAFTVLISGLCRDGRVHDAERMLRDMLSAGFKPDDPTYTMVVDCFCKK 400

Query: 481 QLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKA 521
             +    +LL ++   G  P      +L +   + G  K A
Sbjct: 401 GNVXMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQVKNA 441



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 77/162 (47%), Gaps = 6/162 (3%)

Query: 218 LQPSRIDWINLLD---RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           L+P RI +  L+D   +  +  + L  K     + EE  + +   ++ LI    ++  + 
Sbjct: 313 LRPDRITFTTLIDGCCKYGDMESALEIKRR---MVEEGIELDDVAFTVLISGLCRDGRVH 369

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           DAER+L+ M   G  PD  T T++V  + K GN+    +  + ++S G  P    YN+++
Sbjct: 370 DAERMLRDMLSAGFKPDDPTYTMVVDCFCKKGNVXMGFKLLKEMQSDGHVPGVVTYNALM 429

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
                 GQ K    L+D M+  G+  ++  Y  LL   ++ G
Sbjct: 430 NGLCKQGQVKNAKMLLDAMLNVGVAPNDITYNILLEGHSKHG 471



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 67/152 (44%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++ LID   K   +E A  I ++M E GI  D V  TVL+    + G +  A+     + 
Sbjct: 320 FTTLIDGCCKYGDMESALEIKRRMVEEGIELDDVAFTVLISGLCRDGRVHDAERMLRDML 379

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           S GF+PD   Y  ++  +   G   +G  L+  M + G       Y AL+    + G V+
Sbjct: 380 SAGFKPDDPTYTMVVDCFCKKGNVXMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQVK 439

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAG 411
            A  + + M      P   +  +L+E + + G
Sbjct: 440 NAKMLLDAMLNVGVAPNDITYNILLEGHSKHG 471


>gi|242058301|ref|XP_002458296.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
 gi|241930271|gb|EES03416.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
          Length = 1035

 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 144/314 (45%), Gaps = 4/314 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  YS +I+    E  ++    +  +M + GI PD+VT T ++    KA   DRA+  F
Sbjct: 202 NVVSYSTVINGFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQLFDRAEAVF 261

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + +  +G +P+   YN +I  Y++ G+ K  + +++ M   G + +   Y +LL    + 
Sbjct: 262 QQMIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNYLCKN 321

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G  R A    + M  +  +P++ +  +++  Y   G   +     + M+  G  P+    
Sbjct: 322 GRCREARFFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVANGISPNHHIF 381

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
               +AY K  ++DKA+++  ++ + G  P   +Y  L+D L +L  +++AE    ++  
Sbjct: 382 NIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMIN 441

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFL 553
            G  P   +  SL  +Y    ++K       F E     + P+   F  I+  L   G +
Sbjct: 442 EGVTPDIVVFSSL--VYGLCTVDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRV 499

Query: 554 QDAQRVHGLMEAQG 567
            + QR+   +E  G
Sbjct: 500 MEGQRLVDSIECMG 513



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 107/493 (21%), Positives = 204/493 (41%), Gaps = 34/493 (6%)

Query: 118 QEMGEKAEGKAAAECAEV--EEKPKVITLPKRHGKIKYKIYGLDLSDPKWTEVA-EKIHE 174
           Q +    +GK   E  +V  +  P++  +P     + Y I    L + K  E A E +H 
Sbjct: 134 QLLNGLCDGKRVGEAMDVLLQRMPELGCMPD---TVSYNILLKGLCNEKRAEEALELLHM 190

Query: 175 RGEMILPEEPKPITGKCKLITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLR 233
             +  +   P  +     +I +   +  + + P  L  E  +  + P  + +  ++D L 
Sbjct: 191 MADDQVWSCPPNVVSYSTVI-NGFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLC 249

Query: 234 EQNTQLYFKVAELVLSE---ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVP 290
           +   QL F  AE V  +      + N+  Y+ LI  +      ++  R+L++M+  G  P
Sbjct: 250 K--AQL-FDRAEAVFQQMIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKP 306

Query: 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV 350
           +  T   L++   K G    A+  F+S+   G +P    Y  M+  Y   G       L+
Sbjct: 307 NCCTYGSLLNYLCKNGRCREARFFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEMHDLL 366

Query: 351 DMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410
           ++M+ +GI  +  I+     ++A+CG +  A  I N MR +   P   S   L++A  + 
Sbjct: 367 NLMVANGISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKL 426

Query: 411 GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATY 470
           G  D A   F+ MI  G  PD    +S++      +  +K   L  E+   G  P    +
Sbjct: 427 GRVDDAEVKFNQMINEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVGIHPNIVFF 486

Query: 471 TVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL----- 525
             ++  L +   + E ++L+  I  +G  P      +L D +  AG   +A + L     
Sbjct: 487 NTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVS 546

Query: 526 ---------------GFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAA 570
                          G+ +A +       F ++++  +  G +     +HGL + + F+ 
Sbjct: 547 VGLKPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQTKRFSE 606

Query: 571 SERLKVALISSQT 583
           ++ L + +I+S T
Sbjct: 607 AKELYLNMINSGT 619



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/355 (20%), Positives = 151/355 (42%), Gaps = 13/355 (3%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQT--NVRDYSKLIDAHAKENCLED 275
           + P  + +  +L  L +  T+ + +  EL L+  +  T  ++  Y+ +++   K NC+++
Sbjct: 584 ITPGVVTYNTILHGLFQ--TKRFSEAKELYLNMINSGTKWDIYTYNIILNGLCKSNCVDE 641

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A ++ + +   G+  +I+T  +++    K G  + A + F ++ ++G   +   Y  ++ 
Sbjct: 642 AIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVQNVVTYRLVVE 701

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
             +  G  +   SL   M  +G   + ++  AL+R     GD+  AG   + +    F  
Sbjct: 702 NLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERNFSV 761

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
              + ++L+  +        A+S       L  K      A+  A   K   +D A +L 
Sbjct: 762 EASTTSMLISIFSSDEYQHHAKS-------LPKKYRILNEANSSALIKKARRIDDAYSLF 814

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL-LGKISELGEAPPFKIQVSLCDMYAR 514
            E+   G  P   TY  ++  L +    +EA++L L  I+   +   +   + L +   +
Sbjct: 815 REMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNIIL-NGLCK 873

Query: 515 AGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
           +    +A +    L +K  Q+    F  +I  LL GG  +DA  +   + A G  
Sbjct: 874 SNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLV 928



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/264 (20%), Positives = 106/264 (40%), Gaps = 8/264 (3%)

Query: 218 LQPSRIDWINLLDRL----REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCL 273
           L P  + +  L+D L    R  + ++ F      +  E    ++  +S L+      +  
Sbjct: 409 LSPDAVSYGALIDALCKLGRVDDAEVKFNQ----MINEGVTPDIVVFSSLVYGLCTVDKW 464

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           E  E +  +M   GI P+IV    ++    K G +   +   +S+   G +PD   YN++
Sbjct: 465 EKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTL 524

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           I  +  AG       L++ M++ G++     Y  LL  + + G +  A      M     
Sbjct: 525 IDGHCLAGTIDEASKLLEGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSNGI 584

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
            P + +   ++    Q     +A+  +  MI  G K D      ++    K N +D+A+ 
Sbjct: 585 TPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWDIYTYNIILNGLCKSNCVDEAIK 644

Query: 454 LLLELEKDGFEPGPATYTVLVDWL 477
           +   L   G +    T+ +++  L
Sbjct: 645 MFQNLCSKGLQLNIITFNIMIGAL 668



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 86/186 (46%), Gaps = 6/186 (3%)

Query: 218  LQPSRIDWINLLDRLREQNTQLYFKVAELVLS--EESFQTNVRDYSKLIDAHAKENCLED 275
            L P  + +  +L  L +  T  + +  EL LS      Q N+  Y+ +++   K NC+++
Sbjct: 822  LTPDVVTYNTILHGLFQ--TGRFSEAKELYLSMINSRTQMNIYTYNIILNGLCKSNCVDE 879

Query: 276  AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
            A ++ + +   G+  +I+T  +++    K G  + A + F ++ ++G  PD   Y  +  
Sbjct: 880  AFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVPDVVTYRLVAE 939

Query: 336  AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
              +  G  +    L   M  SG      +  AL+R   Q GD+  AG    + +++E   
Sbjct: 940  NLIEEGSLEEFDGLFLTMEKSGTPLDSRLLNALVRRLLQRGDISRAGAY--LSKLDEKNF 997

Query: 396  TLESCT 401
            +LE+ T
Sbjct: 998  SLEAST 1003


>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 529

 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 138/321 (42%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++ + S + NV  Y+ +ID   K+  + +A  +  +M+  GI PD +T T L++ +   G
Sbjct: 140 MIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFCLLG 199

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            L  A    + +      P   +YN +I A    G  K   +L+ +M   GI+     Y 
Sbjct: 200 QLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYS 259

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+  +   G+V+ A QI + M      P + S  +++    +    D+A +    M+  
Sbjct: 260 TLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHK 319

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
              PD     S+I    K   +  ALNL+ E+   G      TYT L+D L + Q +++A
Sbjct: 320 NMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKA 379

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
             L  K+ E G  P      +L D   + G  K A +    L  K   +    +  +I+G
Sbjct: 380 TALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISG 439

Query: 547 LLAGGFLQDAQRVHGLMEAQG 567
           L   G   +A  +   ME  G
Sbjct: 440 LCKEGMFDEALAIKSKMEDNG 460



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 147/332 (44%), Gaps = 4/332 (1%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           + FQ +   Y  L++   K      A ++L+ + +    P++V    ++    K   ++ 
Sbjct: 109 QGFQMDHVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNE 168

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A + +  + + G  PD   Y ++I  +   GQ     SL+D MI   I     IY  L+ 
Sbjct: 169 AYDLYSEMDARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILIN 228

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
           +  + G+V+ A  +  +M  E  +P + + + L++ Y   G+   A+  F  M+++G  P
Sbjct: 229 ALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNP 288

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           +      MI    K   +D+A+NLL E+      P   TY  L+D L +   I  A  L+
Sbjct: 289 NVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLM 348

Query: 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLL 548
            ++   G+        SL D   +     KA  AL F++ K+  + P    +  +I+GL 
Sbjct: 349 NEMHHRGQPADVVTYTSLLDALCKNQNLDKA-TAL-FMKMKERGIQPTMYTYTALIDGLC 406

Query: 549 AGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
            GG L++AQ +   +  +G          +IS
Sbjct: 407 KGGRLKNAQELFQHLLVKGCCIDVWTYTVMIS 438



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/244 (22%), Positives = 115/244 (47%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           V+++E  +  V  YS L+D +     +++A++I   M + G+ P++ +  ++++   K  
Sbjct: 245 VMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCK 304

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            +D A      +      PD   YNS+I     +G+    ++L++ M   G       Y 
Sbjct: 305 RVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYT 364

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           +LL +  +  ++  A  +   M+    QPT+ + T L++   + G    A+  F +++  
Sbjct: 365 SLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVK 424

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G   D      MI+   K+ + D+AL +  ++E +G  P   T+ +++  L      ++A
Sbjct: 425 GCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKA 484

Query: 487 EQLL 490
           E+LL
Sbjct: 485 EKLL 488



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/295 (21%), Positives = 124/295 (42%), Gaps = 8/295 (2%)

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           + +++K++ + AK      A  + K+M   GI  + VT  +L++ +   G +  +     
Sbjct: 10  IIEFNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQMAFSFSVLG 69

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
            +   G+QPD    N+++      G+ K  +   D ++  G +     Y  LL    + G
Sbjct: 70  KILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGLCKIG 129

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
           + R A ++  ++     +P +     +++   +    ++A   +  M   G  PD     
Sbjct: 130 ETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYT 189

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
           ++I  +     L  A +LL E+      PG   Y +L++ L +   + EA+ LL  +++ 
Sbjct: 190 TLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKE 249

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD----DFERIINGL 547
           G  P      +L D Y   G  + A Q    +     QMG +     +  +INGL
Sbjct: 250 GIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAM----VQMGVNPNVYSYNIMINGL 300



 Score = 39.7 bits (91), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 46/239 (19%), Positives = 91/239 (38%)

Query: 330 YNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389
           +N ++ +     Q    +SL   M   GI  +      L+  F   G +  +  +   + 
Sbjct: 13  FNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQMAFSFSVLGKIL 72

Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD 449
              +QP   +   L++     G+  ++    D ++  G + D     +++    K     
Sbjct: 73  KLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGLCKIGETR 132

Query: 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLC 509
            A+ LL  +E     P    Y  ++D L + +L+NEA  L  ++   G  P      +L 
Sbjct: 133 CAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLI 192

Query: 510 DMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
             +   G    A   L  +  K    G   +  +IN L   G +++A+ +  +M  +G 
Sbjct: 193 YGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGI 251


>gi|115444491|ref|NP_001046025.1| Os02g0170000 [Oryza sativa Japonica Group]
 gi|49388067|dbj|BAD25179.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113535556|dbj|BAF07939.1| Os02g0170000 [Oryza sativa Japonica Group]
          Length = 397

 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 136/296 (45%), Gaps = 4/296 (1%)

Query: 285 ENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPK 344
           E   VP   T  +L+  Y  AG+L RA+     +R HG  P+  VYN+ +   + A   +
Sbjct: 5   EAQCVPTEDTYALLLRAYCNAGSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKARCTE 64

Query: 345 LGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
             + +   M       + E +  ++  + +      + ++ N M+    +P + + T LV
Sbjct: 65  KAVEVYQRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALV 124

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
            A+ + G  ++A   F+ M + GH+PD     +++ AY +  L   A  +   ++  G E
Sbjct: 125 NAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCE 184

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQA 524
           P  A+Y +LVD  GR  L  +AE +  ++ + G +P  K  + L   +AR+G   +  + 
Sbjct: 185 PDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEV 244

Query: 525 LGFLEAKKEQMGPDDF--ERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVAL 578
           +  L   K  + PD F    ++N     G L D +R+   ME +G A      VA+
Sbjct: 245 MAQLH--KSGLTPDTFALNAMLNAYARAGRLDDMERLFAAMERRGDADVGTYNVAV 298



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 122/257 (47%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+ A+     L  AE ++ +M E+GI P+       +    KA   ++A E ++ ++
Sbjct: 15  YALLLRAYCNAGSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMK 74

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
               + + + +  MI  Y  A QP   M + + M + G + +   Y AL+ +FA+ G   
Sbjct: 75  RERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCE 134

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++   M+    +P + +   L+EAY +AG P  A   F  M  +G +PD      ++
Sbjct: 135 KAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILV 194

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            AYG+  L + A  +  EL++ G  P   ++ +L+    R       E+++ ++ + G  
Sbjct: 195 DAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLT 254

Query: 500 PPFKIQVSLCDMYARAG 516
           P      ++ + YARAG
Sbjct: 255 PDTFALNAMLNAYARAG 271



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 131/276 (47%), Gaps = 4/276 (1%)

Query: 244 AELVLSE---ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
           AE V+SE        N   Y+  +D   K  C E A  + ++M       +  T T++++
Sbjct: 31  AEGVISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMIN 90

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
           +Y KA     + + F  ++S G +P+   Y +++ A+   G  +    + + M  +G E 
Sbjct: 91  VYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEP 150

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
               Y AL+ ++++ G  +GA +I ++M+    +P   S  +LV+AYG+AG  + A + F
Sbjct: 151 DVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVF 210

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
           + + + G  P  +    ++AA+ +     +   ++ +L K G  P       +++   R 
Sbjct: 211 EELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARA 270

Query: 481 QLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
             +++ E+L   +   G+A      V++ + Y RAG
Sbjct: 271 GRLDDMERLFAAMERRGDADVGTYNVAV-NAYGRAG 305



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/236 (22%), Positives = 104/236 (44%), Gaps = 10/236 (4%)

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
           +E+ Y  LLR++   G +  A  + + MR     P        ++   +A   ++A   +
Sbjct: 11  TEDTYALLLRAYCNAGSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVY 70

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
             M R   + +      MI  YGK      ++ +  E++  G +P   TYT LV+   R 
Sbjct: 71  QRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFARE 130

Query: 481 QLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG--PD 538
            L  +AE++  ++ + G  P      +L + Y+RAG+ + A +    +    + MG  PD
Sbjct: 131 GLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLM----QHMGCEPD 186

Query: 539 --DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQPTR 592
              +  +++     G  +DA+ V   ++ +G + + +  + L+++    R    TR
Sbjct: 187 RASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHA--RSGNATR 240



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/253 (21%), Positives = 108/253 (42%), Gaps = 34/253 (13%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  Y+ L++A A+E   E AE + ++M + G  PD+     L+  YS+AG    A E F
Sbjct: 116 NICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIF 175

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             ++  G +PD+  YN ++ AY  AG  +   ++ + +   G+  + + ++ LL + A+ 
Sbjct: 176 SLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARS 235

Query: 376 GDVRG-----------------------------AGQITNIMRI-----EEFQPTLESCT 401
           G+                                AG++ ++ R+           + +  
Sbjct: 236 GNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLFAAMERRGDADVGTYN 295

Query: 402 LLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD 461
           + V AYG+AG   +  + F  +   G   D     + + AY ++    + + ++ E+   
Sbjct: 296 VAVNAYGRAGYVGRMEAAFAAVAARGLAADVVTWTARMGAYARRKEYGRCVGMVEEMVDA 355

Query: 462 GFEPGPATYTVLV 474
           G  P   T  VL+
Sbjct: 356 GCYPDAGTARVLL 368



 Score = 42.0 bits (97), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 9/148 (6%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L+ ++F  N      +++A+A+   L+D ER+   M   G   D+ T  V V+ Y +AG 
Sbjct: 253 LTPDTFALNA-----MLNAYARAGRLDDMERLFAAMERRGDA-DVGTYNVAVNAYGRAGY 306

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           + R + AF ++ + G   D   + + + AY    +    + +V+ M+ +G          
Sbjct: 307 VGRMEAAFAAVAARGLAADVVTWTARMGAYARRKEYGRCVGMVEEMVDAGCYPDAGTARV 366

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQP 395
           LL   A C D R   Q+T I+R    +P
Sbjct: 367 LL---AACSDERQVEQVTAIVRSMHKKP 391


>gi|255660858|gb|ACU25598.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
          Length = 418

 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 127/262 (48%), Gaps = 8/262 (3%)

Query: 211 LAEWKELLQPSRIDWINLLD---RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAH 267
           + +W   L+PS + +  L++   RL + +     K A   +     Q +V  YS LI+  
Sbjct: 162 ITKWG--LRPSVVSFNTLMNGYIRLGDLDEGFRLKSA---MHASGVQPDVYTYSVLINGL 216

Query: 268 AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK 327
            KE+ +++A  +  +M + G+VP+ VT T L+ ++ K G +D A E ++ + S GF PD 
Sbjct: 217 CKESKVDEANELFNEMLDRGLVPNGVTFTTLIDVHCKNGMVDSAMEIYKQMLSQGFSPDL 276

Query: 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNI 387
             YN++I      G  K   +L+D M  +G++  +  Y  L+    + GD+  A +    
Sbjct: 277 ITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPDKITYTTLIDGCCKEGDLETAFEFRKR 336

Query: 388 MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447
           M  E  +    + T LV    Q G  D A   F  M+ +G KPD+     +I  + KK  
Sbjct: 337 MIKESIRLDNVAYTALVSGLCQEGRADDAEKMFREMLSVGLKPDNGTYTMIINEFCKKGD 396

Query: 448 LDKALNLLLELEKDGFEPGPAT 469
           +  A  LL E+++DG  P   T
Sbjct: 397 VRTASRLLKEMQRDGHVPCVVT 418



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 87/195 (44%)

Query: 281 KKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNA 340
           K++ E G    +    +++H + K G + RA+  F+++   G +P    +N+++  Y+  
Sbjct: 125 KEILECGYPASLYFFNIVMHRFCKEGEMRRAQSVFDAITKWGLRPSVVSFNTLMNGYIRL 184

Query: 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
           G    G  L   M  SG++     Y  L+    +   V  A ++ N M      P   + 
Sbjct: 185 GDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKVDEANELFNEMLDRGLVPNGVTF 244

Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
           T L++ + + G  D A   +  M+  G  PD     ++I    KK  L +   L+ E+  
Sbjct: 245 TTLIDVHCKNGMVDSAMEIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSM 304

Query: 461 DGFEPGPATYTVLVD 475
           +G +P   TYT L+D
Sbjct: 305 NGLKPDKITYTTLID 319



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 58/276 (21%), Positives = 116/276 (42%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E  +  ++  ++ ++    KE  +  A+ +   + + G+ P +V+   L++ Y + G+LD
Sbjct: 129 ECGYPASLYFFNIVMHRFCKEGEMRRAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLD 188

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
                  ++ + G QPD   Y+ +I       +      L + M+  G+  +   +  L+
Sbjct: 189 EGFRLKSAMHASGVQPDVYTYSVLINGLCKESKVDEANELFNEMLDRGLVPNGVTFTTLI 248

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               + G V  A +I   M  + F P L +   L+    + GD  Q R+  D M   G K
Sbjct: 249 DVHCKNGMVDSAMEIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLK 308

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     ++I    K+  L+ A      + K+        YT LV  L +    ++AE++
Sbjct: 309 PDKITYTTLIDGCCKEGDLETAFEFRKRMIKESIRLDNVAYTALVSGLCQEGRADDAEKM 368

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
             ++  +G  P       + + + + G  + A + L
Sbjct: 369 FREMLSVGLKPDNGTYTMIINEFCKKGDVRTASRLL 404


>gi|224126121|ref|XP_002329666.1| predicted protein [Populus trichocarpa]
 gi|222870547|gb|EEF07678.1| predicted protein [Populus trichocarpa]
          Length = 821

 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 83/338 (24%), Positives = 151/338 (44%), Gaps = 8/338 (2%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E     NV  Y+ ++    K++  E+  +IL  M  +G  P+ +T   ++ M    G 
Sbjct: 411 MKESGCAPNVCTYNAILGMLGKKSQSEEMMKILCDMKVDGCAPNRITWNTMLSMCGNKGM 470

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
               K  F+ ++S GF+PD+  +N++I A    G       + D M+ +G   S   Y A
Sbjct: 471 HKYVKRVFQEMKSCGFEPDRDTFNTLITASGRCGSDIDAEKIYDEMLEAGFTPSVATYNA 530

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           LL + A+ GD R A  +   M+ + F+P+  S +L++ +Y + G   +  +  +  I  G
Sbjct: 531 LLNALARRGDWRTAESVIKDMKNKGFKPSETSYSLILNSYAKGGYV-KGINRIEKDIYDG 589

Query: 428 HK-PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           H  P      ++I A  K   L         L+K G++P    +  ++    R  + + A
Sbjct: 590 HIFPSWMLLRTLILANFKCRALAGMERAFQALQKHGYKPDLVVFNSMLSMFSRKNMHDRA 649

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
            +++  I E G  P      SL D+YAR G   KA + L  L+   ++     +  +I G
Sbjct: 650 HEIMHLIQECGLQPDLVTYNSLMDLYARGGECWKAEEILRELQNSGDKSDLISYNTVIKG 709

Query: 547 LLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTF 584
               G + +A R    M ++G      ++  +++  TF
Sbjct: 710 FCRQGLMHEALRTLSEMISRG------IRPCIVTYNTF 741



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 103/395 (26%), Positives = 176/395 (44%), Gaps = 13/395 (3%)

Query: 197 KILSLEKEEDPSPLLAEWKEL-LQPSRIDWIN----LLDRL--REQNTQLYFKVAELVLS 249
           K L L  + + + LL EW  L L    ++  N    L+ R+  RE    +  K+ + V+ 
Sbjct: 143 KALDLSGDCERAILLFEWLVLNLGTGNVNLDNQAVELMARILGRESQHSIASKLFD-VIP 201

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG-NL 308
            + +  +VR Y+ ++ ++++    E A  I +KMNE+G+ P +VT  V++ +Y K G + 
Sbjct: 202 LDDYSLDVRAYTTILHSYSRCGKYERAVAIFEKMNESGLSPTLVTYNVMLDVYGKMGRSW 261

Query: 309 DRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLAL 368
           ++     + +RS G   D+   +++I A    G           + + G       Y AL
Sbjct: 262 NKILGLLDEMRSKGLGFDEFTCSTVISACGREGLLDEAKEFFVGLKSQGYAPGTVTYNAL 321

Query: 369 LRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH 428
           L+ F + G    A  I   M      P   +   LV AY +AG  ++  +  D M   G 
Sbjct: 322 LQVFGKAGIYSEALSIMKEMEDNNCPPDAVTYNELVAAYVRAGFYEEGAALIDTMTENGI 381

Query: 429 KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQ 488
           KP+     +MI AYG+   +DKAL+L  ++++ G  P   TY  ++  LG+     E  +
Sbjct: 382 KPNAVTYTTMINAYGRAAQVDKALSLYDQMKESGCAPNVCTYNAILGMLGKKSQSEEMMK 441

Query: 489 LLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP--DDFERIING 546
           +L  +   G AP      ++  M    G+ K   +   F E K     P  D F  +I  
Sbjct: 442 ILCDMKVDGCAPNRITWNTMLSMCGNKGMHKYVKRV--FQEMKSCGFEPDRDTFNTLITA 499

Query: 547 LLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
               G   DA++++  M   GF  S     AL+++
Sbjct: 500 SGRCGSDIDAEKIYDEMLEAGFTPSVATYNALLNA 534



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 112/272 (41%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L  + +      Y+ L+    K     +A  I+K+M +N   PD VT   LV  Y +AG 
Sbjct: 306 LKSQGYAPGTVTYNALLQVFGKAGIYSEALSIMKEMEDNNCPPDAVTYNELVAAYVRAGF 365

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            +      +++  +G +P+   Y +MI AY  A Q    +SL D M  SG   +   Y A
Sbjct: 366 YEEGAALIDTMTENGIKPNAVTYTTMINAYGRAAQVDKALSLYDQMKESGCAPNVCTYNA 425

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           +L    +        +I   M+++   P   +   ++   G  G     +  F  M   G
Sbjct: 426 ILGMLGKKSQSEEMMKILCDMKVDGCAPNRITWNTMLSMCGNKGMHKYVKRVFQEMKSCG 485

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            +PD     ++I A G+      A  +  E+ + GF P  ATY  L++ L R      AE
Sbjct: 486 FEPDRDTFNTLITASGRCGSDIDAEKIYDEMLEAGFTPSVATYNALLNALARRGDWRTAE 545

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEK 519
            ++  +   G  P       + + YA+ G  K
Sbjct: 546 SVIKDMKNKGFKPSETSYSLILNSYAKGGYVK 577



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 71/344 (20%), Positives = 142/344 (41%), Gaps = 35/344 (10%)

Query: 220 PSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERI 279
           P+RI W  +L     +    Y K     +    F+ +   ++ LI A  +     DAE+I
Sbjct: 453 PNRITWNTMLSMCGNKGMHKYVKRVFQEMKSCGFEPDRDTFNTLITASGRCGSDIDAEKI 512

Query: 280 LKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339
             +M E G  P + T   L++  ++ G+   A+   + +++ GF+P +  Y+ ++ +Y  
Sbjct: 513 YDEMLEAGFTPSVATYNALLNALARRGDWRTAESVIKDMKNKGFKPSETSYSLILNSYAK 572

Query: 340 AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLES 399
            G  K            GI R E+             D+       + M +         
Sbjct: 573 GGYVK------------GINRIEK-------------DIYDGHIFPSWMLLR-------- 599

Query: 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELE 459
            TL++  +         R+ F  + + G+KPD     SM++ + +KN+ D+A  ++  ++
Sbjct: 600 -TLILANFKCRALAGMERA-FQALQKHGYKPDLVVFNSMLSMFSRKNMHDRAHEIMHLIQ 657

Query: 460 KDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEK 519
           + G +P   TY  L+D   R     +AE++L ++   G+        ++   + R G+  
Sbjct: 658 ECGLQPDLVTYNSLMDLYARGGECWKAEEILRELQNSGDKSDLISYNTVIKGFCRQGLMH 717

Query: 520 KALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLM 563
           +AL+ L  + ++  +     +   + G  A G   +   V   M
Sbjct: 718 EALRTLSEMISRGIRPCIVTYNTFVGGYAAKGMFAEIDEVLSYM 761



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/319 (20%), Positives = 137/319 (42%), Gaps = 23/319 (7%)

Query: 188 TGKC--KLITDKILSLEKEEDPSPLLAEWKELLQP--SRIDWINLLDRLREQNTQLYFKV 243
           +G+C   +  +KI     E   +P +A +  LL     R DW                + 
Sbjct: 500 SGRCGSDIDAEKIYDEMLEAGFTPSVATYNALLNALARRGDW----------------RT 543

Query: 244 AELVLSE---ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
           AE V+ +   + F+ +   YS +++++AK   ++   RI K + +  I P  +    L+ 
Sbjct: 544 AESVIKDMKNKGFKPSETSYSLILNSYAKGGYVKGINRIEKDIYDGHIFPSWMLLRTLIL 603

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
              K   L   + AF++L+ HG++PD  V+NSM+  +           ++ ++   G++ 
Sbjct: 604 ANFKCRALAGMERAFQALQKHGYKPDLVVFNSMLSMFSRKNMHDRAHEIMHLIQECGLQP 663

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
               Y +L+  +A+ G+   A +I   ++    +  L S   +++ + + G   +A    
Sbjct: 664 DLVTYNSLMDLYARGGECWKAEEILRELQNSGDKSDLISYNTVIKGFCRQGLMHEALRTL 723

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
             MI  G +P      + +  Y  K +  +   +L  + K    P   TY ++VD   + 
Sbjct: 724 SEMISRGIRPCIVTYNTFVGGYAAKGMFAEIDEVLSYMTKHDCRPNELTYKIVVDGYCKA 783

Query: 481 QLINEAEQLLGKISELGEA 499
           +   EA   +  I+++ ++
Sbjct: 784 KKFKEAMDFVSTITDIDDS 802


>gi|242084770|ref|XP_002442810.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
 gi|241943503|gb|EES16648.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
          Length = 722

 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 142/324 (43%), Gaps = 8/324 (2%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELV---LSEESFQTNVRDYSKLIDAHAKENCLE 274
           LQP  I + +LL+   +  +    K A L+   L        V  Y+ LID + +   LE
Sbjct: 374 LQPDVITYNSLLNGYCKAGS---LKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGDLE 430

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           +A R+ ++M E G +PD+ T T+L+     A +L  A+E F+ + S G QPD   YN+ I
Sbjct: 431 EARRLKEEMVEQGCLPDVCTYTILMKGSHNACSLAMAREFFDEMLSKGLQPDCFAYNTRI 490

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
            A +  G       L ++M+  GI      Y  L+    + G++  A  +   M     Q
Sbjct: 491 RAELTLGAIAKAFRLREVMMLEGISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQ 550

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P   + T L+ A+ + G   +AR  F  MI  G  P        I AY ++  L  A   
Sbjct: 551 PDCITYTCLIHAHCERGLLREARKFFKDMISDGLAPSAVTYTVFIHAYCRRGNLYSAYGW 610

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
             ++ ++G EP   TY VL+  L R      A +   ++ E G  P       L D   +
Sbjct: 611 FRKMLEEGVEPNEITYNVLIHALCRTGRTQLAYRHFHEMLERGLVPNKYTYTLLIDGNCK 670

Query: 515 AGIEKKALQALGFLEAKKEQMGPD 538
            G  + A++   + E  +  + PD
Sbjct: 671 EGNWEDAMRF--YFEMHQNGIHPD 692



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 120/262 (45%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI     +  ++ A+ +  +M   GI+P +VT   ++H   ++G ++ A+  F  +R
Sbjct: 311 YNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQVEAAQVKFVEMR 370

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G QPD   YNS++  Y  AG  K  + L   +  +G+  +   Y  L+  + + GD+ 
Sbjct: 371 AMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGDLE 430

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++   M  +   P + + T+L++    A     AR  FD M+  G +PD     + I
Sbjct: 431 EARRLKEEMVEQGCLPDVCTYTILMKGSHNACSLAMAREFFDEMLSKGLQPDCFAYNTRI 490

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            A      + KA  L   +  +G      TY +L+D L +   +N+A+ L  K+   G  
Sbjct: 491 RAELTLGAIAKAFRLREVMMLEGISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQ 550

Query: 500 PPFKIQVSLCDMYARAGIEKKA 521
           P       L   +   G+ ++A
Sbjct: 551 PDCITYTCLIHAHCERGLLREA 572



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 79/361 (21%), Positives = 135/361 (37%), Gaps = 39/361 (10%)

Query: 245 ELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK 304
           +L +  E     V  Y+ +I    +   +E A+    +M   G+ PD++T   L++ Y K
Sbjct: 331 QLEMENEGIMPTVVTYNAMIHGLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCK 390

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV-------------------------- 338
           AG+L  A   F  LR  G  P    YN +I  Y                           
Sbjct: 391 AGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCT 450

Query: 339 ---------NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389
                    NA    +     D M++ G++     Y   +R+    G +  A ++  +M 
Sbjct: 451 YTILMKGSHNACSLAMAREFFDEMLSKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMM 510

Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD 449
           +E       +  +L++   + G+ + A+     M+  G +PD      +I A+ ++ LL 
Sbjct: 511 LEGISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLR 570

Query: 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLC 509
           +A     ++  DG  P   TYTV +    R   +  A     K+ E G  P       L 
Sbjct: 571 EARKFFKDMISDGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLI 630

Query: 510 DMYARAGIEKKALQALGFLEAKKEQMGPDDFER--IINGLLAGGFLQDAQRVHGLMEAQG 567
               R G  +  L    F E  +  + P+ +    +I+G    G  +DA R +  M   G
Sbjct: 631 HALCRTG--RTQLAYRHFHEMLERGLVPNKYTYTLLIDGNCKEGNWEDAMRFYFEMHQNG 688

Query: 568 F 568
            
Sbjct: 689 I 689



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 92/223 (41%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           +  Q +   Y+  I A      +  A R+ + M   GI  D VT  +L+    K GNL+ 
Sbjct: 477 KGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMMLEGISSDTVTYNILIDGLCKTGNLND 536

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           AK+    +  +G QPD   Y  +I A+   G  +        MI+ G+  S   Y   + 
Sbjct: 537 AKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFFKDMISDGLAPSAVTYTVFIH 596

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
           ++ + G++  A      M  E  +P   +  +L+ A  + G    A  +F  M+  G  P
Sbjct: 597 AYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRTGRTQLAYRHFHEMLERGLVP 656

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVL 473
           +      +I    K+   + A+    E+ ++G  P   T+  L
Sbjct: 657 NKYTYTLLIDGNCKEGNWEDAMRFYFEMHQNGIHPDYLTHKAL 699



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 110/255 (43%), Gaps = 3/255 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           ++      +V+D ++++   +     +D   +  +M + GI P IVT   L+  + K G 
Sbjct: 193 MASHGVAPDVKDCNRVLRVLSDAARWDDICAVHAEMLQLGIEPSIVTYNTLLDSFLKEGR 252

Query: 308 LDRAKEAFESL--RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
            D+     + +  R  G  P+   +N +I      G  +    +V+ M  S  + S   Y
Sbjct: 253 NDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLEEAAEMVEGMRLSK-KASSFTY 311

Query: 366 LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
             L+      G V+ A  +   M  E   PT+ +   ++    Q+G  + A+  F  M  
Sbjct: 312 NPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQVEAAQVKFVEMRA 371

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
           +G +PD     S++  Y K   L +AL L  +L   G  P   TY +L+D   RL  + E
Sbjct: 372 MGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGDLEE 431

Query: 486 AEQLLGKISELGEAP 500
           A +L  ++ E G  P
Sbjct: 432 ARRLKEEMVEQGCLP 446



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 114/268 (42%), Gaps = 27/268 (10%)

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
           AF  + SHG  PD K  N ++    +A +     ++   M+  GIE S   Y  LL SF 
Sbjct: 189 AFHEMASHGVAPDVKDCNRVLRVLSDAARWDDICAVHAEMLQLGIEPSIVTYNTLLDSFL 248

Query: 374 QCG------------DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421
           + G            + RG+G + N +          +  +++    + GD ++A    +
Sbjct: 249 KEGRNDKVAMLLKEMETRGSGCLPNDV----------THNVVITGLARKGDLEEAAEMVE 298

Query: 422 YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ 481
            M RL  K        +I     K  + KA +L LE+E +G  P   TY  ++  L +  
Sbjct: 299 GM-RLSKKASSFTYNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQSG 357

Query: 482 LINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--D 539
            +  A+    ++  +G  P      SL + Y +AG  K+AL   G L  +   + P    
Sbjct: 358 QVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDL--RHAGLAPTVLT 415

Query: 540 FERIINGLLAGGFLQDAQRVHGLMEAQG 567
           +  +I+G    G L++A+R+   M  QG
Sbjct: 416 YNILIDGYCRLGDLEEARRLKEEMVEQG 443



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 62/159 (38%), Gaps = 8/159 (5%)

Query: 218 LQPSRIDWINLLDRLREQN----TQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCL 273
           LQP  I +  L+    E+      + +FK     +  +    +   Y+  I A+ +   L
Sbjct: 549 LQPDCITYTCLIHAHCERGLLREARKFFKD----MISDGLAPSAVTYTVFIHAYCRRGNL 604

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
             A    +KM E G+ P+ +T  VL+H   + G    A   F  +   G  P+K  Y  +
Sbjct: 605 YSAYGWFRKMLEEGVEPNEITYNVLIHALCRTGRTQLAYRHFHEMLERGLVPNKYTYTLL 664

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           I      G  +  M     M  +GI      + AL + F
Sbjct: 665 IDGNCKEGNWEDAMRFYFEMHQNGIHPDYLTHKALFKGF 703


>gi|357491947|ref|XP_003616261.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355517596|gb|AES99219.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 134/284 (47%), Gaps = 2/284 (0%)

Query: 218 LQPSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L+PS + +  L+    R +N +  F V + V+  E    +V  YS LI+   KE+ +E+A
Sbjct: 257 LRPSVVSFNTLISGYCRSKNVEEGF-VLKSVMESERISPDVFTYSALINGLCKESRVEEA 315

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
             +  +M E G+VP+ VT T L+    K G +D A   FE ++  G +PD   YN++I  
Sbjct: 316 NGLFDEMCEMGLVPNGVTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALING 375

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
               G  K    L++ MI +G +  +  +  L+    + GD+  A +I + M  E  +  
Sbjct: 376 LCRDGDLKEARKLLNEMIGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELD 435

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
             + T L+    + G    A      M+  GHKPDD     +I  + KK  +     LL 
Sbjct: 436 DVAFTALISGLCRDGRVRDAERMLKDMLSAGHKPDDPTYTMVIDCFCKKGDVKMGAKLLK 495

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
           E+++DG  PG  TY  L++   +   +  A+ LL  +  +   P
Sbjct: 496 EMQRDGRVPGVVTYNALMNGFCKQGQMKNAKMLLHAMLNMEVVP 539



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/318 (19%), Positives = 134/318 (42%), Gaps = 1/318 (0%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           +  +  NV  ++ L+    K   + +A  +  +++  G+ P +V+   L+  Y ++ N++
Sbjct: 219 DYGYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSKNVE 278

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
                   + S    PD   Y+++I       + +    L D M   G+  +   +  L+
Sbjct: 279 EGFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLI 338

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               + G +  A +   IM+    +P L +   L+    + GD  +AR   + MI  G K
Sbjct: 339 DGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFK 398

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     +++    K   +D AL +   + ++G E     +T L+  L R   + +AE++
Sbjct: 399 PDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRDGRVRDAERM 458

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLA 549
           L  +   G  P       + D + + G  K   + L  ++      G   +  ++NG   
Sbjct: 459 LKDMLSAGHKPDDPTYTMVIDCFCKKGDVKMGAKLLKEMQRDGRVPGVVTYNALMNGFCK 518

Query: 550 GGFLQDAQR-VHGLMEAQ 566
            G +++A+  +H ++  +
Sbjct: 519 QGQMKNAKMLLHAMLNME 536



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/316 (19%), Positives = 130/316 (41%), Gaps = 1/316 (0%)

Query: 245 ELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGI-VPDIVTSTVLVHMYS 303
           + V +      +V  +  LI A+     +EDA + L+ + +N   +P      +L  +  
Sbjct: 143 QTVPTHHRHNHSVLVFDALIIAYTDSEFIEDAIQCLRLVKKNNFSIPVCGCDYLLRRVMK 202

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363
                    E +  +  +G+ P+  ++N ++  +   G       + D +   G+  S  
Sbjct: 203 LNQQPGHCWEFYLEVLDYGYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVV 262

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
            +  L+  + +  +V     + ++M  E   P + + + L+    +    ++A   FD M
Sbjct: 263 SFNTLISGYCRSKNVEEGFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEM 322

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483
             +G  P+     ++I    K   +D AL     ++  G  P   TY  L++ L R   +
Sbjct: 323 CEMGLVPNGVTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDL 382

Query: 484 NEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERI 543
            EA +LL ++   G  P      +L D   + G    AL+    +  +  ++    F  +
Sbjct: 383 KEARKLLNEMIGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTAL 442

Query: 544 INGLLAGGFLQDAQRV 559
           I+GL   G ++DA+R+
Sbjct: 443 ISGLCRDGRVRDAERM 458



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/276 (19%), Positives = 127/276 (46%), Gaps = 6/276 (2%)

Query: 202 EKEEDPSPLLAEWKEL-LQPSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVRD 259
            + E+ + L  E  E+ L P+ + +  L+D + +     L  +  E ++ +   + ++  
Sbjct: 310 SRVEEANGLFDEMCEMGLVPNGVTFTTLIDGQCKHGKIDLALRNFE-IMKDRGIRPDLIT 368

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI+   ++  L++A ++L +M  NG  PD +T T L+    K G++D A E  + + 
Sbjct: 369 YNALINGLCRDGDLKEARKLLNEMIGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMV 428

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G + D   + ++I      G+ +    ++  M+++G +  +  Y  ++  F + GDV+
Sbjct: 429 EEGIELDDVAFTALISGLCRDGRVRDAERMLKDMLSAGHKPDDPTYTMVIDCFCKKGDVK 488

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
              ++   M+ +   P + +   L+  + + G    A+     M+ +   P+D     ++
Sbjct: 489 MGAKLLKEMQRDGRVPGVVTYNALMNGFCKQGQMKNAKMLLHAMLNMEVVPNDITFNILL 548

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
             + K      +++  +   + G     A+YT LV+
Sbjct: 549 DGHCKHG---SSVDFKIFNGEKGLVSDYASYTALVN 581



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 81/178 (45%), Gaps = 4/178 (2%)

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
           + P +    +L+  + + GD   AR  FD + R G +P      ++I+ Y +   +++  
Sbjct: 222 YPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSKNVEEGF 281

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
            L   +E +   P   TY+ L++ L +   + EA  L  ++ E+G  P      +L D  
Sbjct: 282 VLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDGQ 341

Query: 513 ARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
            + G    AL+   F   K   + PD   +  +INGL   G L++A+++   M   GF
Sbjct: 342 CKHGKIDLALR--NFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIGNGF 397


>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
 gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
          Length = 471

 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 89/350 (25%), Positives = 158/350 (45%), Gaps = 13/350 (3%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E  F  NV  ++ L+D   K   ++DA ++L  M   G+ P++VT + L+    K+    
Sbjct: 120 EGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFL 179

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            AKE  E +++ G  PD   Y+++I     A + +    ++  M  SG      +Y +++
Sbjct: 180 EAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSII 239

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
            +F + G +  A +    MR +   P + +   +++   + G   +A+   D M   G  
Sbjct: 240 HAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDV 299

Query: 430 -PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQ 488
            PD    +++I    K ++L +A  LL  + K G  P   TYT ++D L +   + EAE 
Sbjct: 300 LPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEY 359

Query: 489 LLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD---FERIIN 545
           LL  +   G AP      +L     +A   +K  +A   +E  +    P +   +  ++N
Sbjct: 360 LLQGMKRAGCAPNVVTYTTLISGLCKA---RKVDEAERVMEEMRNAGCPPNLVTYNTMVN 416

Query: 546 GLLAGGFLQDAQRV-----HGLMEAQGFAASERLKV-ALISSQTFNRQRQ 589
           GL   G +++AQ++      G  E    AA+ R  V AL+SS       Q
Sbjct: 417 GLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQ 466



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 140/298 (46%), Gaps = 9/298 (3%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           L  A  +L++M   G  PD  T T ++   + AG+LD A    + LRS G  P+   Y +
Sbjct: 6   LHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGA---MDHLRSMGCDPNVVTYTA 62

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I A+  A + +  M L++ M   G   +   Y  L+ +  +   V  A  +   M    
Sbjct: 63  LIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGG 122

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
           F P + +   LV+ + + G+ D AR     M+  G +P+    +++I    K     +A 
Sbjct: 123 FAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAK 182

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
            +L E++  G  P   TY+ L+  L +   I EAEQ+L +++  G  P   +  S+   +
Sbjct: 183 EVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAF 242

Query: 513 ARAGIEKKALQALGFL-EAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQG 567
            ++G   K L+A   L E +K++  PD   +  +I+GL   G + +AQ +   M+  G
Sbjct: 243 CKSG---KLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESG 297



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 149/334 (44%), Gaps = 17/334 (5%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ LI A A+   LE+A ++L++M E G  P++VT  VLV    K   +  A++  
Sbjct: 56  NVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVV 115

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + +   GF P+   +NS++  +   G       L+ +M+  G+  +   Y AL+    + 
Sbjct: 116 KKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKS 175

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
                A ++   M+     P   + + L+    +A   ++A      M   G  PD    
Sbjct: 176 QKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVY 235

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
           +S+I A+ K   L +A   L E+ K    P   TY  ++D L +L  I EA+ +L ++ E
Sbjct: 236 SSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQE 295

Query: 496 LGEAPPFKIQVS-----LC--DMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIING 546
            G+  P  +  S     LC  DM   A   +K L  +      K    PD   +  II+G
Sbjct: 296 SGDVLPDVVTYSTVINGLCKSDMLVEA---QKLLDRMC-----KAGCNPDVVTYTTIIDG 347

Query: 547 LLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
           L   G L++A+ +   M+  G A +      LIS
Sbjct: 348 LCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLIS 381



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 98/204 (48%), Gaps = 3/204 (1%)

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           GD+  A ++   M+   F P   + T ++ A   AGD D A    D++  +G  P+    
Sbjct: 4   GDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGA---MDHLRSMGCDPNVVTY 60

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++IAA+ +   L++A+ LL E+ + G  P   TY VLVD L +L ++  A+ ++ K+ E
Sbjct: 61  TALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIE 120

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
            G AP      SL D + + G    A + LG + AK  +     +  +I+GL       +
Sbjct: 121 GGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLE 180

Query: 556 AQRVHGLMEAQGFAASERLKVALI 579
           A+ V   M+A G         ALI
Sbjct: 181 AKEVLEEMKASGVTPDAFTYSALI 204



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 70/314 (22%), Positives = 130/314 (41%), Gaps = 44/314 (14%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELV--LSEESFQTNVRDYSKLIDAHAKENCLED 275
           ++P+ + +  L+D L +  +Q + +  E++  +       +   YS LI    K + +E+
Sbjct: 158 MRPNVVTYSALIDGLCK--SQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEE 215

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           AE++L++M  +G  PD+V  + ++H + K+G L  A++  + +R     PD   YN++I 
Sbjct: 216 AEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVID 275

Query: 336 AYVNAGQ------------------PKL------------------GMSLVDMMITSGIE 359
                G+                  P +                     L+D M  +G  
Sbjct: 276 GLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCN 335

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
                Y  ++    +CG +  A  +   M+     P + + T L+    +A   D+A   
Sbjct: 336 PDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERV 395

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG---FEPGPATYTVLVDW 476
            + M   G  P+     +M+        + +A  L+  + KDG     P  ATY  +V+ 
Sbjct: 396 MEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRM-KDGRAECSPDAATYRTIVNA 454

Query: 477 LGRLQLINEAEQLL 490
           L    L+ EAEQLL
Sbjct: 455 LMSSDLVQEAEQLL 468


>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 790

 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 89/350 (25%), Positives = 150/350 (42%), Gaps = 36/350 (10%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++ E     + R Y   ID   K N +E+A R+   + E G+  +++  +VL+  Y K G
Sbjct: 352 LMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVG 411

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            +D A   FE + S    P+   +N++I    +AG  K  +SL D M+  G++ +   + 
Sbjct: 412 KVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFN 471

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+    + GD   A +    M     +P   +    +E Y  AG   +A    D M+++
Sbjct: 472 ILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAE---DMMVQM 528

Query: 427 ---GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483
              G  PDD    S+I AYGK  L   A ++L  +     EP   T+  L+  L   + +
Sbjct: 529 KEEGVPPDDFTYTSLIKAYGKLGLTYSAFDVLKSMFDADCEPSHHTFLSLIKQLFDKRYV 588

Query: 484 NE--AEQLLGKISELGEAP--------PFKIQVSLCDMYARAGIEKKALQALGFLEAKKE 533
            E   E  +  +S  G+ P         F I + L                  F E +K 
Sbjct: 589 VEKSGETGVESVSNFGDVPGSNMWKMMEFDIVIEL------------------FEEMEKH 630

Query: 534 QMGPDD--FERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
              PD   +E++I+G+     L  A ++   M+ +G + SE +  A+IS 
Sbjct: 631 GCTPDSKCYEKLISGICKVENLGIALKLLDQMQKEGISPSEMVFNAVISC 680



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/278 (24%), Positives = 120/278 (43%), Gaps = 1/278 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + ++    NV  Y+ LI    ++N +  A  +L +M E  +VPD++T   L+    +AG+
Sbjct: 284 MKDDCCYPNVYTYTALIKGLCRKN-VHKAMGLLDEMLERNLVPDLITYNSLIAGQCRAGH 342

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           LD A      ++  G  PD++ Y   I     + + +    L D +   G+  +  +Y  
Sbjct: 343 LDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSV 402

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+  + + G V  AG +   M  +   P   +   L+     AG+  +A S FD M+++G
Sbjct: 403 LIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMG 462

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            KP       +I    K+   D A   L ++   G +P   TY   ++       + EAE
Sbjct: 463 LKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAE 522

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
            ++ ++ E G  P      SL   Y + G+   A   L
Sbjct: 523 DMMVQMKEEGVPPDDFTYTSLIKAYGKLGLTYSAFDVL 560



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 90/399 (22%), Positives = 161/399 (40%), Gaps = 82/399 (20%)

Query: 248 LSEESFQTNVRDYSKLIDAHAK----------------ENC------------------- 272
           L+EE    NV  YS LID + K                +NC                   
Sbjct: 388 LTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGN 447

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           L++A  +  +M + G+ P + T  +L+    K G+ D A +  + + S G +P  + YN+
Sbjct: 448 LKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYNA 507

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
            I  Y +AG+ +    ++  M   G+   +  Y +L++++ + G    A  +   M   +
Sbjct: 508 FIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIKAYGKLGLTYSAFDVLKSMFDAD 567

Query: 393 FQPTLESCTLL----------VEAYGQAGDP------DQARSN------FDYMIRL---- 426
            +P+  +   L          VE  G+ G        D   SN      FD +I L    
Sbjct: 568 CEPSHHTFLSLIKQLFDKRYVVEKSGETGVESVSNFGDVPGSNMWKMMEFDIVIELFEEM 627

Query: 427 ---GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483
              G  PD +C   +I+   K   L  AL LL +++K+G  P    +  ++    +LQ  
Sbjct: 628 EKHGCTPDSKCYEKLISGICKVENLGIALKLLDQMQKEGISPSEMVFNAVISCCCKLQKY 687

Query: 484 NEAEQLLGKISELGEAPPFK-IQVSLCDMYARAGIEK-----KALQALGFLEAKKEQMGP 537
            EA  ++  +   G +P  +  +  +C +Y     E+     K L+  G+          
Sbjct: 688 GEAANIVEDMICSGHSPQLEHCKTLICGLYEEGETERGNSVFKKLRGCGY---------N 738

Query: 538 DD---FERIINGLLAGGFLQDAQRVHGLMEAQGFAASER 573
           DD   ++ +I+G+L  G +++  ++   ME  G   S R
Sbjct: 739 DDEIAWKILIDGMLKQGLVEEFSQLFEEMEKNGCNFSPR 777



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 88/358 (24%), Positives = 151/358 (42%), Gaps = 16/358 (4%)

Query: 226 INLLDR--LREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKM 283
           + LL R  L ++  QLY ++ E  +S + +  N+     +I+ + K   +++A++ + KM
Sbjct: 164 LTLLARFGLVDEMNQLYTEMLEEFVSMDIYTFNL-----MINVYCKMGFVKEAKQFMCKM 218

Query: 284 NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343
            + G+ PD  TST  +  Y ++ ++D A   FE + +     ++  YN +I     AG+ 
Sbjct: 219 IQAGLSPDYFTSTSFILGYCRSKDVDSAFRVFEEMPNR----NEVSYNQLIHGLCEAGRI 274

Query: 344 KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403
              +SL   M       +   Y AL++   +  +V  A  + + M      P L +   L
Sbjct: 275 DEAVSLFVRMKDDCCYPNVYTYTALIKGLCR-KNVHKAMGLLDEMLERNLVPDLITYNSL 333

Query: 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGF 463
           +    +AG  D A      M   G  PD R     I    K N +++A  L   L ++G 
Sbjct: 334 IAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEGV 393

Query: 464 EPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
                 Y+VL+D   ++  ++EA  L  K+     +P      +L      AG  K+AL 
Sbjct: 394 SANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEALS 453

Query: 524 ALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
              F +  K  + P    F  +I  +L  G   DA +    M + G     R   A I
Sbjct: 454 L--FDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYNAFI 509



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 69/313 (22%), Positives = 134/313 (42%), Gaps = 5/313 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +++ Y++L+   A+   +++  ++  +M E  +  DI T  +++++Y K G +  AK+  
Sbjct: 156 SLKCYNELLTLLARFGLVDEMNQLYTEMLEEFVSMDIYTFNLMINVYCKMGFVKEAKQFM 215

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G  PD     S I+ Y  +        + + M      R+E  Y  L+    + 
Sbjct: 216 CKMIQAGLSPDYFTSTSFILGYCRSKDVDSAFRVFEEMPN----RNEVSYNQLIHGLCEA 271

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A  +   M+ +   P + + T L++   +  +  +A    D M+     PD    
Sbjct: 272 GRIDEAVSLFVRMKDDCCYPNVYTYTALIKGLCRK-NVHKAMGLLDEMLERNLVPDLITY 330

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            S+IA   +   LD A  LL  +++ G  P   TY   +D+L +   + EA +L   ++E
Sbjct: 331 NSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTE 390

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
            G +    +   L D Y + G   +A      + +K        F  +I+GL + G L++
Sbjct: 391 EGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKE 450

Query: 556 AQRVHGLMEAQGF 568
           A  +   M   G 
Sbjct: 451 ALSLFDQMVKMGL 463



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 76/173 (43%), Gaps = 6/173 (3%)

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            D   E FE +  HG  PD K Y  +I          + + L+D M   GI  SE ++ A
Sbjct: 617 FDIVIELFEEMEKHGCTPDSKCYEKLISGICKVENLGIALKLLDQMQKEGISPSEMVFNA 676

Query: 368 LLRSFAQCGDVRGAGQITNI---MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
           ++     C  ++  G+  NI   M      P LE C  L+    + G+ ++  S F  + 
Sbjct: 677 VISC---CCKLQKYGEAANIVEDMICSGHSPQLEHCKTLICGLYEEGETERGNSVFKKLR 733

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
             G+  D+     +I    K+ L+++   L  E+EK+G    P TY++L   L
Sbjct: 734 GCGYNDDEIAWKILIDGMLKQGLVEEFSQLFEEMEKNGCNFSPRTYSILTQKL 786


>gi|449440401|ref|XP_004137973.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Cucumis sativus]
          Length = 606

 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 92/429 (21%), Positives = 191/429 (44%), Gaps = 33/429 (7%)

Query: 157 GLDLSDPKWTEVAEKIHERGEMILPEEPKPITGKCKLITDKILSLEKEEDPSPLLAEWKE 216
           G+++    WT V + + ++GE++          + K + D+++     +   P +  +  
Sbjct: 187 GIEIRVCSWTAVVDGLCKKGEVV----------RAKALMDELVC----KGFKPSVITYNT 232

Query: 217 LL----QPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC 272
           LL    +   +  +N +  L E+N   Y               NV  Y+ LI+ +++ + 
Sbjct: 233 LLNGYIEIKDVGGVNEILSLMEKNVVDY---------------NVTTYTMLIEWYSRSSK 277

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           +E+AE++  +M + GI PD+   T +++   K GN+ RA   F+ +      P+   Y +
Sbjct: 278 IEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGA 337

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I     AG+ K    +V+ M + G++ +  I+  L+  + + G +  A ++ NIM+ + 
Sbjct: 338 LINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKG 397

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
           F+    +C ++   + ++   ++A+     M   G  P+    + +I  Y K+    +A 
Sbjct: 398 FEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEAR 457

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
            L   +EK G  P   TY   ++   +   + EA +L+ ++ E G  P      SL D  
Sbjct: 458 RLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGE 517

Query: 513 ARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572
             +G   +AL+    +           +  II+GL   G   +A +++  M  +G    +
Sbjct: 518 RASGNVDRALELFNEMPQLGLNRNVVTYTVIISGLSKDGRADEAFKLYDEMNKEGIVPDD 577

Query: 573 RLKVALISS 581
            +  +LI+S
Sbjct: 578 GIYSSLIAS 586



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 94/198 (47%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++ ++ F+ +    + +     + N  E+A+R+L  M E G+ P++V+ ++L+ +Y K  
Sbjct: 392 IMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQ 451

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           N   A+  F+ +   G  P    YN+ I  Y   G+ +    L++ M   G+      Y 
Sbjct: 452 NFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYT 511

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           +L+      G+V  A ++ N M        + + T+++    + G  D+A   +D M + 
Sbjct: 512 SLIDGERASGNVDRALELFNEMPQLGLNRNVVTYTVIISGLSKDGRADEAFKLYDEMNKE 571

Query: 427 GHKPDDRCTASMIAAYGK 444
           G  PDD   +S+IA+  K
Sbjct: 572 GIVPDDGIYSSLIASLHK 589



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/358 (20%), Positives = 146/358 (40%), Gaps = 35/358 (9%)

Query: 225 WINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMN 284
           W  ++D L ++   +  K     L  + F+ +V  Y+ L++ + +   +     IL  M 
Sbjct: 195 WTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYIEIKDVGGVNEILSLME 254

Query: 285 ENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPK 344
           +N +  ++ T T+L+  YS++  ++ A++ F+ +   G +PD  +Y S+I      G  K
Sbjct: 255 KNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNMK 314

Query: 345 LGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
               L D M    +  +   Y AL+    + G+++ A  + N M                
Sbjct: 315 RAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDM---------------- 358

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
               Q+   D  R  F+               +++  Y KK ++D+AL L   +++ GFE
Sbjct: 359 ----QSKGVDVNRVIFN---------------TLMDGYCKKGMIDEALRLQNIMQQKGFE 399

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQA 524
               T  ++     R     EA++LL  + E G AP       L D+Y +     +A + 
Sbjct: 400 IDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRL 459

Query: 525 LGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQ 582
              +E K +      +   I      G +++A ++   M+ +G         +LI  +
Sbjct: 460 FKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGE 517



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/300 (21%), Positives = 130/300 (43%), Gaps = 2/300 (0%)

Query: 271 NCLEDAERILKKMNENGIVPDIV--TSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKK 328
           N   + ERI+  +      P IV     +L  +Y      D + E F+  R  GF+ D++
Sbjct: 99  NLWSNVERIVSSIGGEFNEPSIVEKFCDMLFRVYMDNRMFDSSLEVFDYARKKGFEIDER 158

Query: 329 VYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIM 388
                ++A   +G  +L +  +  M+ SGIE     + A++    + G+V  A  + + +
Sbjct: 159 SCFEFLLALKRSGNMELCVEFLRQMVDSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDEL 218

Query: 389 RIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLL 448
             + F+P++ +   L+  Y +  D          M +     +      +I  Y + + +
Sbjct: 219 VCKGFKPSVITYNTLLNGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKI 278

Query: 449 DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSL 508
           ++A  L  E+ K G EP    YT +++W  +   +  A  L  +++E    P      +L
Sbjct: 279 EEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGAL 338

Query: 509 CDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
            +   +AG  K A   +  +++K   +    F  +++G    G + +A R+  +M+ +GF
Sbjct: 339 INGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGF 398



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/320 (20%), Positives = 131/320 (40%), Gaps = 35/320 (10%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           ++ F+ + R   + + A  +   +E     L++M ++GI   + + T +V    K G + 
Sbjct: 150 KKGFEIDERSCFEFLLALKRSGNMELCVEFLRQMVDSGIEIRVCSWTAVVDGLCKKGEVV 209

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
           RAK   + L   GF+P    YN+++  Y+                               
Sbjct: 210 RAKALMDELVCKGFKPSVITYNTLLNGYI------------------------------- 238

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               +  DV G  +I ++M        + + T+L+E Y ++   ++A   FD M++ G +
Sbjct: 239 ----EIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIE 294

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     S+I    K   + +A  L  E+ +    P   TY  L++   +   +  AE +
Sbjct: 295 PDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMM 354

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLA 549
           +  +   G      I  +L D Y + G+  +AL+    ++ K  ++       I +G   
Sbjct: 355 VNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCR 414

Query: 550 GGFLQDAQRVHGLMEAQGFA 569
               ++A+R+   ME +G A
Sbjct: 415 SNRREEAKRLLLTMEERGVA 434


>gi|449531231|ref|XP_004172591.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like, partial [Cucumis sativus]
          Length = 602

 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 92/429 (21%), Positives = 191/429 (44%), Gaps = 33/429 (7%)

Query: 157 GLDLSDPKWTEVAEKIHERGEMILPEEPKPITGKCKLITDKILSLEKEEDPSPLLAEWKE 216
           G+++    WT V + + ++GE++          + K + D+++     +   P +  +  
Sbjct: 183 GIEIRVCSWTAVVDGLCKKGEVV----------RAKALMDELVC----KGFKPSVITYNT 228

Query: 217 LL----QPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC 272
           LL    +   +  +N +  L E+N   Y               NV  Y+ LI+ +++ + 
Sbjct: 229 LLNGYIEIKDVGGVNEILSLMEKNVVDY---------------NVTTYTMLIEWYSRSSK 273

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           +E+AE++  +M + GI PD+   T +++   K GN+ RA   F+ +      P+   Y +
Sbjct: 274 IEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGA 333

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I     AG+ K    +V+ M + G++ +  I+  L+  + + G +  A ++ NIM+ + 
Sbjct: 334 LINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKG 393

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
           F+    +C ++   + ++   ++A+     M   G  P+    + +I  Y K+    +A 
Sbjct: 394 FEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEAR 453

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
            L   +EK G  P   TY   ++   +   + EA +L+ ++ E G  P      SL D  
Sbjct: 454 RLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGE 513

Query: 513 ARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572
             +G   +AL+    +           +  II+GL   G   +A +++  M  +G    +
Sbjct: 514 RASGNVDRALELFNEMPQLGLNRNVVTYTVIISGLSKDGRADEAFKLYDEMNKEGIVPDD 573

Query: 573 RLKVALISS 581
            +  +LI+S
Sbjct: 574 GIYSSLIAS 582



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 94/198 (47%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++ ++ F+ +    + +     + N  E+A+R+L  M E G+ P++V+ ++L+ +Y K  
Sbjct: 388 IMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQ 447

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           N   A+  F+ +   G  P    YN+ I  Y   G+ +    L++ M   G+      Y 
Sbjct: 448 NFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYT 507

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           +L+      G+V  A ++ N M        + + T+++    + G  D+A   +D M + 
Sbjct: 508 SLIDGERASGNVDRALELFNEMPQLGLNRNVVTYTVIISGLSKDGRADEAFKLYDEMNKE 567

Query: 427 GHKPDDRCTASMIAAYGK 444
           G  PDD   +S+IA+  K
Sbjct: 568 GIVPDDGIYSSLIASLHK 585



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/358 (20%), Positives = 146/358 (40%), Gaps = 35/358 (9%)

Query: 225 WINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMN 284
           W  ++D L ++   +  K     L  + F+ +V  Y+ L++ + +   +     IL  M 
Sbjct: 191 WTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYIEIKDVGGVNEILSLME 250

Query: 285 ENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPK 344
           +N +  ++ T T+L+  YS++  ++ A++ F+ +   G +PD  +Y S+I      G  K
Sbjct: 251 KNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNMK 310

Query: 345 LGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
               L D M    +  +   Y AL+    + G+++ A  + N M                
Sbjct: 311 RAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDM---------------- 354

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
               Q+   D  R  F+               +++  Y KK ++D+AL L   +++ GFE
Sbjct: 355 ----QSKGVDVNRVIFN---------------TLMDGYCKKGMIDEALRLQNIMQQKGFE 395

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQA 524
               T  ++     R     EA++LL  + E G AP       L D+Y +     +A + 
Sbjct: 396 IDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRL 455

Query: 525 LGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQ 582
              +E K +      +   I      G +++A ++   M+ +G         +LI  +
Sbjct: 456 FKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGE 513



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/300 (21%), Positives = 130/300 (43%), Gaps = 2/300 (0%)

Query: 271 NCLEDAERILKKMNENGIVPDIV--TSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKK 328
           N   + ERI+  +      P IV     +L  +Y      D + E F+  R  GF+ D++
Sbjct: 95  NLWSNVERIVSSIGGEFNEPSIVEKFCDMLFRVYMDNRMFDSSLEVFDYARKKGFEIDER 154

Query: 329 VYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIM 388
                ++A   +G  +L +  +  M+ SGIE     + A++    + G+V  A  + + +
Sbjct: 155 SCFEFLLALKRSGNMELCVEFLRQMVDSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDEL 214

Query: 389 RIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLL 448
             + F+P++ +   L+  Y +  D          M +     +      +I  Y + + +
Sbjct: 215 VCKGFKPSVITYNTLLNGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKI 274

Query: 449 DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSL 508
           ++A  L  E+ K G EP    YT +++W  +   +  A  L  +++E    P      +L
Sbjct: 275 EEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGAL 334

Query: 509 CDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
            +   +AG  K A   +  +++K   +    F  +++G    G + +A R+  +M+ +GF
Sbjct: 335 INGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGF 394



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/320 (20%), Positives = 131/320 (40%), Gaps = 35/320 (10%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           ++ F+ + R   + + A  +   +E     L++M ++GI   + + T +V    K G + 
Sbjct: 146 KKGFEIDERSCFEFLLALKRSGNMELCVEFLRQMVDSGIEIRVCSWTAVVDGLCKKGEVV 205

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
           RAK   + L   GF+P    YN+++  Y+                               
Sbjct: 206 RAKALMDELVCKGFKPSVITYNTLLNGYI------------------------------- 234

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               +  DV G  +I ++M        + + T+L+E Y ++   ++A   FD M++ G +
Sbjct: 235 ----EIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIE 290

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     S+I    K   + +A  L  E+ +    P   TY  L++   +   +  AE +
Sbjct: 291 PDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMM 350

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLA 549
           +  +   G      I  +L D Y + G+  +AL+    ++ K  ++       I +G   
Sbjct: 351 VNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCR 410

Query: 550 GGFLQDAQRVHGLMEAQGFA 569
               ++A+R+   ME +G A
Sbjct: 411 SNRREEAKRLLLTMEERGVA 430


>gi|302753732|ref|XP_002960290.1| hypothetical protein SELMODRAFT_73828 [Selaginella moellendorffii]
 gi|300171229|gb|EFJ37829.1| hypothetical protein SELMODRAFT_73828 [Selaginella moellendorffii]
          Length = 546

 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 142/303 (46%), Gaps = 4/303 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           +S LI  + + N LEDA   L++M   GI PD+V  + L+ +  K  +  +A   F  L+
Sbjct: 63  FSTLISGYGRANRLEDAMGWLQEMEAGGIKPDLVIFSTLIELAGKVKDYSKATSLFSKLK 122

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G  PDK +YNSMI  Y  A   K    L+  M  +G+      Y  L+ ++A+     
Sbjct: 123 ASGIAPDKVIYNSMINLYGKAKFYKEAQGLLAEMKEAGLMPDTVSYTILINAYAESQKYL 182

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR-LGHKPDDRCTASM 438
            A Q+   M+ +  Q  + +C ++++ YG+      A   F  M + LG + +     +M
Sbjct: 183 EAKQVFLEMKTKGIQLDVTTCNMMIDVYGKLEMVRDAEELFWSMSKTLGIQQNVVTYNTM 242

Query: 439 IAAYGKKNLLDKALNLLLELE-KDGFEPGPATYTVLVDWLGRLQLINE-AEQLLGKISEL 496
           I  Y +  LL +A N+   ++ K G EP   TY  ++ +L  L L +E A +L+ K+ + 
Sbjct: 243 IKVYKEAELLSEAFNVFYYMQNKGGVEPNVITYNTIL-FLHGLTLQHEKAMRLVRKMQQR 301

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDA 556
           G  P      +L  +Y + G   +A      L  K  +M    ++ +I      G +  A
Sbjct: 302 GIEPNAVTYSTLISIYGKTGKYDRAAFLFKTLREKGFEMDEILYQSMIVVYERAGLVAHA 361

Query: 557 QRV 559
           +R+
Sbjct: 362 KRL 364



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 123/284 (43%), Gaps = 32/284 (11%)

Query: 241 FKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
           F V   + ++   + NV  Y+ ++  H      E A R+++KM + GI P+ VT + L+ 
Sbjct: 256 FNVFYYMQNKGGVEPNVITYNTILFLHGLTLQHEKAMRLVRKMQQRGIEPNAVTYSTLIS 315

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAG-------------QPKLGM 347
           +Y K G  DRA   F++LR  GF+ D+ +Y SMI+ Y  AG             QP +  
Sbjct: 316 IYGKTGKYDRAAFLFKTLREKGFEMDEILYQSMIVVYERAGLVAHAKRLLEELKQPDIVP 375

Query: 348 SLVDMMITSGIERSEE------------------IYLALLRSFAQCGDVRGAGQITNIMR 389
               + I +  E+ EE                   Y ++++ F +    + A  +   MR
Sbjct: 376 RDTAISILAKAEKLEEAAKLYWRSHEAGEIKESVTYKSMIQLFVRNKRSKNAIDVFENMR 435

Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD 449
              F P  E+  +L+ AYGQ    + A   +  M   G   +      M+  YG    + 
Sbjct: 436 ESGFLPDSETTVVLLAAYGQLRQLEDAEKLYLDMRERGCTLEKEVHFQMLKLYGDARKIR 495

Query: 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
           +A ++   L+ +G + G   Y  ++    R   +NEA +L  ++
Sbjct: 496 EAEDMFAALKLEGLD-GDELYLTMIRIYERASKLNEASRLFSEM 538



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 87/364 (23%), Positives = 150/364 (41%), Gaps = 48/364 (13%)

Query: 210 LLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHA 268
           LLAE KE  L P  + +  L++   E    L  K   L +  +  Q +V   + +ID + 
Sbjct: 152 LLAEMKEAGLMPDTVSYTILINAYAESQKYLEAKQVFLEMKTKGIQLDVTTCNMMIDVYG 211

Query: 269 KENCLEDAERILKKMNEN-GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSH-GFQPD 326
           K   + DAE +   M++  GI  ++VT   ++ +Y +A  L  A   F  +++  G +P+
Sbjct: 212 KLEMVRDAEELFWSMSKTLGIQQNVVTYNTMIKVYKEAELLSEAFNVFYYMQNKGGVEPN 271

Query: 327 KKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITN 386
              YN+++  +    Q +  M LV  M   GIE                           
Sbjct: 272 VITYNTILFLHGLTLQHEKAMRLVRKMQQRGIE--------------------------- 304

Query: 387 IMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKN 446
                   P   + + L+  YG+ G  D+A   F  +   G + D+    SMI  Y +  
Sbjct: 305 --------PNAVTYSTLISIYGKTGKYDRAAFLFKTLREKGFEMDEILYQSMIVVYERAG 356

Query: 447 LLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQV 506
           L+  A  LL EL++    P     ++    L + + + EA +L  +  E GE        
Sbjct: 357 LVAHAKRLLEELKQPDIVPRDTAISI----LAKAEKLEEAAKLYWRSHEAGEIKESVTYK 412

Query: 507 SLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGG---FLQDAQRVHGLM 563
           S+  ++ R    K++  A+   E  +E     D E  +  L A G    L+DA++++  M
Sbjct: 413 SMIQLFVR---NKRSKNAIDVFENMRESGFLPDSETTVVLLAAYGQLRQLEDAEKLYLDM 469

Query: 564 EAQG 567
             +G
Sbjct: 470 RERG 473



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 83/190 (43%), Gaps = 4/190 (2%)

Query: 322 GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGA 381
           G+ P    YN ++   + A Q +L   LV  M+   +   +  +  L+  + +   +  A
Sbjct: 20  GYAPSIFAYNVVLKNVLRARQWELAEGLVLEMVEKDLVPDKFTFSTLISGYGRANRLEDA 79

Query: 382 GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441
                 M     +P L   + L+E  G+  D  +A S F  +   G  PD     SMI  
Sbjct: 80  MGWLQEMEAGGIKPDLVIFSTLIELAGKVKDYSKATSLFSKLKASGIAPDKVIYNSMINL 139

Query: 442 YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
           YGK     +A  LL E+++ G  P   +YT+L++     Q   EA+Q+  ++   G    
Sbjct: 140 YGKAKFYKEAQGLLAEMKEAGLMPDTVSYTILINAYAESQKYLEAKQVFLEMKTKG---- 195

Query: 502 FKIQVSLCDM 511
            ++ V+ C+M
Sbjct: 196 IQLDVTTCNM 205



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/259 (20%), Positives = 105/259 (40%), Gaps = 36/259 (13%)

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           E AE ++ +M E  +VPD  T + L+  Y +A  L+ A    + + + G +PD  +++++
Sbjct: 42  ELAEGLVLEMVEKDLVPDKFTFSTLISGYGRANRLEDAMGWLQEMEAGGIKPDLVIFSTL 101

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           I             SL   +  SGI   + IY ++                         
Sbjct: 102 IELAGKVKDYSKATSLFSKLKASGIAPDKVIYNSM------------------------- 136

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
                     +  YG+A    +A+     M   G  PD      +I AY +     +A  
Sbjct: 137 ----------INLYGKAKFYKEAQGLLAEMKEAGLMPDTVSYTILINAYAESQKYLEAKQ 186

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE-LGEAPPFKIQVSLCDMY 512
           + LE++  G +    T  +++D  G+L+++ +AE+L   +S+ LG         ++  +Y
Sbjct: 187 VFLEMKTKGIQLDVTTCNMMIDVYGKLEMVRDAEELFWSMSKTLGIQQNVVTYNTMIKVY 246

Query: 513 ARAGIEKKALQALGFLEAK 531
             A +  +A     +++ K
Sbjct: 247 KEAELLSEAFNVFYYMQNK 265



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 2/144 (1%)

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P   + + L+  YG+A   + A      M   G KPD    +++I   GK     KA +L
Sbjct: 58  PDKFTFSTLISGYGRANRLEDAMGWLQEMEAGGIKPDLVIFSTLIELAGKVKDYSKATSL 117

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
             +L+  G  P    Y  +++  G+ +   EA+ LL ++ E G  P       L + YA 
Sbjct: 118 FSKLKASGIAPDKVIYNSMINLYGKAKFYKEAQGLLAEMKEAGLMPDTVSYTILINAYAE 177

Query: 515 AGIEKKALQALGFLEAKKEQMGPD 538
           +    +A Q   FLE K + +  D
Sbjct: 178 SQKYLEAKQV--FLEMKTKGIQLD 199


>gi|414882142|tpg|DAA59273.1| TPA: hypothetical protein ZEAMMB73_713491 [Zea mays]
          Length = 987

 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 119/253 (47%), Gaps = 3/253 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E+     V  Y+ LI    K++  ++A R+ + M +NG+ PD     VL     K+G 
Sbjct: 519 MQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSG- 577

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
             RA+EA+  L   G    K  Y S++  +  AG       L++ M+  G +     Y  
Sbjct: 578 --RAEEAYSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSV 635

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           LL++  +   +  A  I + M +   +  + + T+++    + G  D A+S F+ MI  G
Sbjct: 636 LLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSG 695

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
           HKP        I++Y K   +++A +L+ E+E+DG  P   TY + ++  G +  I+ A 
Sbjct: 696 HKPSATTYTVFISSYCKIGRIEEAEHLIGEMERDGVTPDVVTYNIFINGCGHMGYIDRAF 755

Query: 488 QLLGKISELGEAP 500
             L ++ +    P
Sbjct: 756 STLKRMVDASCEP 768



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 141/334 (42%), Gaps = 8/334 (2%)

Query: 246 LVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKA 305
           LVLS + +   +R   +        +  E   ++   + + G++PD VT   ++  Y K 
Sbjct: 140 LVLSPKCYNLALRSLLRF-------DMTEYMGKLYSHLVQEGLLPDTVTYNTMIMAYCKK 192

Query: 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
           G+L  A   F  LR  G Q D    N++++ Y      +    L+ MM   G  R+E  Y
Sbjct: 193 GSLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSDLRKACWLLMMMPLMGCRRNEYSY 252

Query: 366 LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
             L++   +   VR A  +  +M  +     L + TLL++   + G    AR   D M  
Sbjct: 253 TILIQGLCEARCVREALVLVFMMVHDGCSLNLHTYTLLIKGLCKEGRIHDARGLLDEMPL 312

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
            G  P      +MI  Y K   +  AL +   +E++G  P   TY  L+  L   +L +E
Sbjct: 313 RGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYGLCGGKL-DE 371

Query: 486 AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIIN 545
           AE+LL      G  P      +L + Y +A     AL+    + +   ++    +  +IN
Sbjct: 372 AEELLNGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLIN 431

Query: 546 GLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
            L+    L++A+     M A G A +     ++I
Sbjct: 432 VLIKKCRLKEAKETLNEMFANGLAPNVVTYTSII 465



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 127/296 (42%), Gaps = 4/296 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ +ID + K   ++DA  I   M +NG  PD  T   L++     G LD A+E  
Sbjct: 318 SVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYGLC-GGKLDEAEELL 376

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
               + GF P    + ++I  Y  A +    + +   MI+S  +   + Y  L+    + 
Sbjct: 377 NGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKK 436

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
             ++ A +  N M      P + + T +++ Y + G    A   F  M   G  P+    
Sbjct: 437 CRLKEAKETLNEMFANGLAPNVVTYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTY 496

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            S+I    +   L KA+ L+ ++++DG  PG  TYT L+    +    + A +L   + +
Sbjct: 497 GSLIYGLIQDKKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQ 556

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGG 551
            G  P  +    L D   ++G   +A +A  FL  K   +    +  +++G    G
Sbjct: 557 NGLTPDEQAYNVLTDALCKSG---RAEEAYSFLVRKGVVLTKVTYTSLVDGFSKAG 609



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/339 (21%), Positives = 134/339 (39%), Gaps = 22/339 (6%)

Query: 192 KLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEE 251
            ++TD +    + E+    L     +L  +++ + +L+D   +     +  V    +  E
Sbjct: 567 NVLTDALCKSGRAEEAYSFLVRKGVVL--TKVTYTSLVDGFSKAGNTDFAAVLIEKMVNE 624

Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311
             + ++  YS L+ A  K+  L +A  IL +M  +G+  +IV  T+++    K G  D A
Sbjct: 625 GCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHA 684

Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
           K  F  + S G +P    Y   I +Y   G+ +    L+  M   G+      Y   +  
Sbjct: 685 KSLFNEMISSGHKPSATTYTVFISSYCKIGRIEEAEHLIGEMERDGVTPDVVTYNIFING 744

Query: 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAY-----------GQAGDPDQARSNF 420
               G +  A      M     +P   +  LL++ +             +G  +    N 
Sbjct: 745 CGHMGYIDRAFSTLKRMVDASCEPNCWTYWLLLKHFLKMSLINAHYVDTSGMWNWIELNM 804

Query: 421 DY-----MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
            +     M++ G  P     +S+IA + K   L++A  LL  +      P    YT+L+ 
Sbjct: 805 VWQLLERMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHMLGKDISPNEEIYTMLIK 864

Query: 476 WLGRLQLINEAEQLLGKISELGEAPPFK----IQVSLCD 510
               ++L  +A   +  + E G  P  +    + V LCD
Sbjct: 865 CCCDIKLFGKAVSFVTDMIEFGFQPQLESYHYLIVGLCD 903



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 74/373 (19%), Positives = 141/373 (37%), Gaps = 71/373 (19%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERI--------------------------------- 279
           F   V  ++ LI+ + K   ++DA R+                                 
Sbjct: 384 FTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAK 443

Query: 280 --LKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
             L +M  NG+ P++VT T ++  Y K G +  A E F+ +   G  P+   Y S+I   
Sbjct: 444 ETLNEMFANGLAPNVVTYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGL 503

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP-- 395
           +   +    M+L+  M   GI      Y  L++   +  +   A ++  +M      P  
Sbjct: 504 IQDKKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDE 563

Query: 396 ------------------------------TLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
                                         T  + T LV+ + +AG+ D A    + M+ 
Sbjct: 564 QAYNVLTDALCKSGRAEEAYSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVN 623

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
            G K D    + ++ A  K+  L++AL++L ++   G +     YT+++  + +    + 
Sbjct: 624 EGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGKHDH 683

Query: 486 AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERI 543
           A+ L  ++   G  P           Y + G  ++A   +G  E +++ + PD   +   
Sbjct: 684 AKSLFNEMISSGHKPSATTYTVFISSYCKIGRIEEAEHLIG--EMERDGVTPDVVTYNIF 741

Query: 544 INGLLAGGFLQDA 556
           ING    G++  A
Sbjct: 742 INGCGHMGYIDRA 754



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 85/215 (39%), Gaps = 57/215 (26%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF---- 315
           Y+  I ++ K   +E+AE ++ +M  +G+ PD+VT  + ++     G +DRA        
Sbjct: 703 YTVFISSYCKIGRIEEAEHLIGEMERDGVTPDVVTYNIFINGCGHMGYIDRAFSTLKRMV 762

Query: 316 -----------------------------------------------ESLRSHGFQPDKK 328
                                                          E +  HG  P   
Sbjct: 763 DASCEPNCWTYWLLLKHFLKMSLINAHYVDTSGMWNWIELNMVWQLLERMMKHGLNPTVV 822

Query: 329 VYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIM 388
            Y+S+I  +  A + +    L+D M+   I  +EEIY  L++    C D++  G+  + +
Sbjct: 823 TYSSIIAGFCKATRLEEACVLLDHMLGKDISPNEEIYTMLIKC---CCDIKLFGKAVSFV 879

Query: 389 R--IE-EFQPTLESCTLLVEAYGQAGDPDQARSNF 420
              IE  FQP LES   L+      GD D+A+S F
Sbjct: 880 TDMIEFGFQPQLESYHYLIVGLCDEGDYDRAKSLF 914


>gi|302768008|ref|XP_002967424.1| hypothetical protein SELMODRAFT_231012 [Selaginella moellendorffii]
 gi|300165415|gb|EFJ32023.1| hypothetical protein SELMODRAFT_231012 [Selaginella moellendorffii]
          Length = 546

 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 142/303 (46%), Gaps = 4/303 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           +S LI  + + N LEDA   L++M   GI PD+V  + L+ +  K  +  +A   F  L+
Sbjct: 63  FSTLISGYGRANRLEDAMGWLQEMEAGGIKPDLVIFSTLIELAGKVKDYSKATSLFSKLK 122

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G  PDK +YNSMI  Y  A   K    L+  M  +G+      Y  L+ ++A+     
Sbjct: 123 ASGIAPDKVIYNSMINLYGKAKFYKEAQGLLAEMKEAGLMPDTVSYTILINAYAESQKYL 182

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR-LGHKPDDRCTASM 438
            A Q+   M+ +  Q  + +C ++++ YG+      A   F  M + LG + +     +M
Sbjct: 183 EAKQVFLEMKTKGIQLDVTTCNMMIDVYGKLEMVRDAEELFWSMSKTLGIQQNVVTYNTM 242

Query: 439 IAAYGKKNLLDKALNLLLELE-KDGFEPGPATYTVLVDWLGRLQLINE-AEQLLGKISEL 496
           I  Y +  LL +A N+   ++ K G EP   TY  ++ +L  L L +E A +L+ K+ + 
Sbjct: 243 IKVYKEAELLSEAFNVFYYMQNKGGVEPNVITYNTIL-FLHGLTLQHEKAMRLVRKMQQR 301

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDA 556
           G  P      +L  +Y + G   +A      L  K  +M    ++ +I      G +  A
Sbjct: 302 GIEPNAVTYSTLISIYGKTGKYDRAAFLFKTLREKGFEMDEILYQSMIVVYERAGLVAHA 361

Query: 557 QRV 559
           +R+
Sbjct: 362 KRL 364



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 123/284 (43%), Gaps = 32/284 (11%)

Query: 241 FKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
           F V   + ++   + NV  Y+ ++  H      E A R+++KM + GI P+ VT + L+ 
Sbjct: 256 FNVFYYMQNKGGVEPNVITYNTILFLHGLTLQHEKAMRLVRKMQQRGIEPNAVTYSTLIS 315

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAG-------------QPKLGM 347
           +Y K G  DRA   F++LR  GF+ D+ +Y SMI+ Y  AG             QP +  
Sbjct: 316 IYGKTGKYDRAAFLFKTLREKGFEMDEILYQSMIVVYERAGLVAHAKRLLEELKQPDIVP 375

Query: 348 SLVDMMITSGIERSEE------------------IYLALLRSFAQCGDVRGAGQITNIMR 389
               + I +  E+ EE                   Y ++++ F +    + A  +   MR
Sbjct: 376 RDTAISILAKAEKLEEAAKLYWRSHEAGEIKESVTYKSMIQLFMRNKRSKNAIDVFENMR 435

Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD 449
              F P  E+  +L+ AYGQ    + A   +  M   G   +      M+  YG    + 
Sbjct: 436 ESGFLPDSETTVVLLAAYGQLRQLEDAEKLYLDMRERGCTLEKEVHFQMLKLYGDARKIR 495

Query: 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
           +A ++   L+ +G + G   Y  ++    R   +NEA +L  ++
Sbjct: 496 EAEDMFAALKLEGLD-GDELYLTMIRIYERASKLNEASRLFSEM 538



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 87/364 (23%), Positives = 150/364 (41%), Gaps = 48/364 (13%)

Query: 210 LLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHA 268
           LLAE KE  L P  + +  L++   E    L  K   L +  +  Q +V   + +ID + 
Sbjct: 152 LLAEMKEAGLMPDTVSYTILINAYAESQKYLEAKQVFLEMKTKGIQLDVTTCNMMIDVYG 211

Query: 269 KENCLEDAERILKKMNEN-GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSH-GFQPD 326
           K   + DAE +   M++  GI  ++VT   ++ +Y +A  L  A   F  +++  G +P+
Sbjct: 212 KLEMVRDAEELFWSMSKTLGIQQNVVTYNTMIKVYKEAELLSEAFNVFYYMQNKGGVEPN 271

Query: 327 KKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITN 386
              YN+++  +    Q +  M LV  M   GIE                           
Sbjct: 272 VITYNTILFLHGLTLQHEKAMRLVRKMQQRGIE--------------------------- 304

Query: 387 IMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKN 446
                   P   + + L+  YG+ G  D+A   F  +   G + D+    SMI  Y +  
Sbjct: 305 --------PNAVTYSTLISIYGKTGKYDRAAFLFKTLREKGFEMDEILYQSMIVVYERAG 356

Query: 447 LLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQV 506
           L+  A  LL EL++    P     ++    L + + + EA +L  +  E GE        
Sbjct: 357 LVAHAKRLLEELKQPDIVPRDTAISI----LAKAEKLEEAAKLYWRSHEAGEIKESVTYK 412

Query: 507 SLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGG---FLQDAQRVHGLM 563
           S+  ++ R    K++  A+   E  +E     D E  +  L A G    L+DA++++  M
Sbjct: 413 SMIQLFMR---NKRSKNAIDVFENMRESGFLPDSETTVVLLAAYGQLRQLEDAEKLYLDM 469

Query: 564 EAQG 567
             +G
Sbjct: 470 RERG 473



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 83/190 (43%), Gaps = 4/190 (2%)

Query: 322 GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGA 381
           G+ P    YN ++   + A Q +L   LV  M+   +   +  +  L+  + +   +  A
Sbjct: 20  GYAPSIFAYNVVLKNVLRARQWELAEGLVLEMVEKDLVPDKFTFSTLISGYGRANRLEDA 79

Query: 382 GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441
                 M     +P L   + L+E  G+  D  +A S F  +   G  PD     SMI  
Sbjct: 80  MGWLQEMEAGGIKPDLVIFSTLIELAGKVKDYSKATSLFSKLKASGIAPDKVIYNSMINL 139

Query: 442 YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
           YGK     +A  LL E+++ G  P   +YT+L++     Q   EA+Q+  ++   G    
Sbjct: 140 YGKAKFYKEAQGLLAEMKEAGLMPDTVSYTILINAYAESQKYLEAKQVFLEMKTKG---- 195

Query: 502 FKIQVSLCDM 511
            ++ V+ C+M
Sbjct: 196 IQLDVTTCNM 205



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/259 (20%), Positives = 105/259 (40%), Gaps = 36/259 (13%)

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           E AE ++ +M E  +VPD  T + L+  Y +A  L+ A    + + + G +PD  +++++
Sbjct: 42  ELAEGLVLEMVEKDLVPDKFTFSTLISGYGRANRLEDAMGWLQEMEAGGIKPDLVIFSTL 101

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           I             SL   +  SGI   + IY ++                         
Sbjct: 102 IELAGKVKDYSKATSLFSKLKASGIAPDKVIYNSM------------------------- 136

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
                     +  YG+A    +A+     M   G  PD      +I AY +     +A  
Sbjct: 137 ----------INLYGKAKFYKEAQGLLAEMKEAGLMPDTVSYTILINAYAESQKYLEAKQ 186

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE-LGEAPPFKIQVSLCDMY 512
           + LE++  G +    T  +++D  G+L+++ +AE+L   +S+ LG         ++  +Y
Sbjct: 187 VFLEMKTKGIQLDVTTCNMMIDVYGKLEMVRDAEELFWSMSKTLGIQQNVVTYNTMIKVY 246

Query: 513 ARAGIEKKALQALGFLEAK 531
             A +  +A     +++ K
Sbjct: 247 KEAELLSEAFNVFYYMQNK 265



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 2/144 (1%)

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P   + + L+  YG+A   + A      M   G KPD    +++I   GK     KA +L
Sbjct: 58  PDKFTFSTLISGYGRANRLEDAMGWLQEMEAGGIKPDLVIFSTLIELAGKVKDYSKATSL 117

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
             +L+  G  P    Y  +++  G+ +   EA+ LL ++ E G  P       L + YA 
Sbjct: 118 FSKLKASGIAPDKVIYNSMINLYGKAKFYKEAQGLLAEMKEAGLMPDTVSYTILINAYAE 177

Query: 515 AGIEKKALQALGFLEAKKEQMGPD 538
           +    +A Q   FLE K + +  D
Sbjct: 178 SQKYLEAKQV--FLEMKTKGIQLD 199


>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
 gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
          Length = 721

 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 80/359 (22%), Positives = 153/359 (42%), Gaps = 52/359 (14%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F  +   YSK+I      + +E A ++ ++M  NGI PD+   T L+  + KAG +++A+
Sbjct: 218 FIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQAR 277

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
             F+ +   G  P+   Y ++I AY+ + +      + +MM++ G   +   Y AL+   
Sbjct: 278 NWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGL 337

Query: 373 AQCGDVRGAGQITNIMRIEEFQP------------------------------------- 395
            + G +  A QI  IM+ E  +                                      
Sbjct: 338 CKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKE 397

Query: 396 --------TLESC-------TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIA 440
                   ++E C         L++   +AG  D+A+  F  M+  G+ P+    +S+I 
Sbjct: 398 ARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLID 457

Query: 441 AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
              K   LD AL +L ++ ++   P    YT ++D L ++   +EA +L+  + E G  P
Sbjct: 458 RLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMVMMEEKGCNP 517

Query: 501 PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
                 ++ D + ++G  +K L+ L  + +K        +  +IN   + G L +A ++
Sbjct: 518 NVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVTYRVLINHCCSTGLLDEAHKL 576



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 69/335 (20%), Positives = 138/335 (41%), Gaps = 25/335 (7%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           +L +E F  +   Y+K+I    + +  E+A   L +M  +  +P+++T  +L+       
Sbjct: 32  LLEKEEFVPDTVLYTKMISGLCEASLFEEAMDFLTRMRASSCLPNVLTYRILLCGCLNKE 91

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            L R K     + + G  P  +++NS++ AY  +G       L+  M+  G +    +Y 
Sbjct: 92  KLGRCKRILSMMITEGCYPSPRIFNSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYN 151

Query: 367 ALLRSFAQC---------------GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAG 411
            L+                     G++  AG + N + I  F   L  C +        G
Sbjct: 152 ILIGGICSSEEPGKDVLDLAEKAYGEMLEAGVVLNKVNISNFSRCL--CGI--------G 201

Query: 412 DPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYT 471
             ++A +    M+  G  PD    + +I      + ++KA  L  E++++G  P    YT
Sbjct: 202 KFEKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYT 261

Query: 472 VLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK 531
            L+D   +   I +A     ++   G AP      +L   Y ++    KA +    + +K
Sbjct: 262 TLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSK 321

Query: 532 KEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQ 566
                   +  +I+GL   G ++ A +++ +M+ +
Sbjct: 322 GCTPNIVTYTALIDGLCKAGKIEKASQIYKIMKKE 356



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 125/277 (45%), Gaps = 2/277 (0%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           V+   S + NV  Y  L+D   K   +++A  +LK M+  G  P+ V    L+    KAG
Sbjct: 369 VVDGASNEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAG 428

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            LD A+E F ++   G+ P+   Y+S+I       +  L + ++  M+ +    +  IY 
Sbjct: 429 KLDEAQEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYT 488

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            ++    + G    A ++  +M  +   P + + T +++ +G++G  ++       M   
Sbjct: 489 EMIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSK 548

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G  P+      +I       LLD+A  LL E+++  +    A Y  +++   R + I  +
Sbjct: 549 GCAPNFVTYRVLINHCCSTGLLDEAHKLLEEMKQTYWPRHVAGYRKVIEGFNR-EFI-AS 606

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
             L  +ISE    P   +   L D + +AG  + AL+
Sbjct: 607 LYLSFEISENDSVPVAPVYRVLIDNFIKAGRLEIALE 643



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 134/304 (44%), Gaps = 19/304 (6%)

Query: 288 IVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGM 347
            VPD V  T ++    +A   + A +    +R+    P+   Y  ++   +N  + KLG 
Sbjct: 38  FVPDTVLYTKMISGLCEASLFEEAMDFLTRMRASSCLPNVLTYRILLCGCLN--KEKLGR 95

Query: 348 S--LVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVE 405
              ++ MMIT G   S  I+ +L+ ++ + GD   A ++   M     QP      +L+ 
Sbjct: 96  CKRILSMMITEGCYPSPRIFNSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIG 155

Query: 406 AYGQAGDP-----DQARSNFDYMIRLG---HKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
               + +P     D A   +  M+  G   +K +    +  +   GK    +KA N++ E
Sbjct: 156 GICSSEEPGKDVLDLAEKAYGEMLEAGVVLNKVNISNFSRCLCGIGK---FEKAYNVIRE 212

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI 517
           +   GF P  +TY+ ++ +L     + +A QL  ++   G AP   +  +L D + +AG 
Sbjct: 213 MMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGF 272

Query: 518 EKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLK 575
            ++A     F E +++   P+   +  +I+  L    +  A  V+ +M ++G   +    
Sbjct: 273 IEQARN--WFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTY 330

Query: 576 VALI 579
            ALI
Sbjct: 331 TALI 334



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 107/261 (40%), Gaps = 17/261 (6%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           L+ AE+   +M E G+V + V  +         G  ++A      + S GF PD   Y+ 
Sbjct: 168 LDLAEKAYGEMLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFIPDTSTYSK 227

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I    NA + +    L   M  +GI     +Y  L+ SF + G +  A    + M  + 
Sbjct: 228 VIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMERDG 287

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P + + T L+ AY ++    +A   ++ M+  G  P+     ++I    K   ++KA 
Sbjct: 288 CAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKAS 347

Query: 453 NLLLELEKDGF-----------------EPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            +   ++K+                   EP   TY  LVD L +   + EA  LL  +S 
Sbjct: 348 QIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKEARDLLKSMSV 407

Query: 496 LGEAPPFKIQVSLCDMYARAG 516
            G  P   +  +L D   +AG
Sbjct: 408 EGCEPNHVVYDALIDGCCKAG 428



 Score = 43.1 bits (100), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 51/101 (50%), Gaps = 2/101 (1%)

Query: 220 PSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAER 278
           P+ + +  ++D L +   T   +K+  +++ E+    NV  Y+ +ID   K   +E    
Sbjct: 482 PNVVIYTEMIDGLCKVGKTDEAYKLM-VMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLE 540

Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           +L++M+  G  P+ VT  VL++     G LD A +  E ++
Sbjct: 541 LLQQMSSKGCAPNFVTYRVLINHCCSTGLLDEAHKLLEEMK 581


>gi|242065566|ref|XP_002454072.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
 gi|241933903|gb|EES07048.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
          Length = 820

 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 115/234 (49%), Gaps = 4/234 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E  ++   R Y+ L+D   +E   E+AE++L +M +NG+VP  VT T +V+ Y + G 
Sbjct: 256 MKELGWRPATRAYAALVDLWCREQKAEEAEKMLNEMFDNGLVPCAVTCTAVVNAYCREGR 315

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A   FES++  G +P+   YN+M+  + N G+    M+L+D M   G+E     Y  
Sbjct: 316 MSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECGVEPDVVTYNL 375

Query: 368 LLRSFAQC--GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
           L+R   QC  G +  A ++  +M          +  +L++A  + G  D+A S FD +  
Sbjct: 376 LIR--GQCIDGHIESAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEY 433

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
            G +P+     ++I    K    D A   L ++   G  P   TY+  ++ L +
Sbjct: 434 RGIRPNSVTFNTVINGLCKGGKFDVACTFLEKMVSAGCAPDTYTYSPFIENLCK 487



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/253 (21%), Positives = 112/253 (44%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E   + +V  Y+ LI     +  +E A R+L+ M  NG+  D  T  VL+    K G 
Sbjct: 361 MRECGVEPDVVTYNLLIRGQCIDGHIESAFRLLRLMEGNGLAADQYTYNVLIDALCKTGK 420

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D A   F+ L   G +P+   +N++I      G+  +  + ++ M+++G       Y  
Sbjct: 421 VDEACSLFDGLEYRGIRPNSVTFNTVINGLCKGGKFDVACTFLEKMVSAGCAPDTYTYSP 480

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
            + +  +    R      + M  ++ +P+  + T++++   +  +   A   +  M+ LG
Sbjct: 481 FIENLCKTKGSREGLSFIDEMLQKDVKPSTVNYTIVIDRLFKERNYGLATRIWGQMVSLG 540

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD     + + AY  +  L +A N+++E++K G       Y  L+D    +   + A 
Sbjct: 541 CSPDVVTYTTSVRAYCNEGRLHEAENVVMEMKKGGIIVDAMAYNTLIDGHTSIGKTDHAV 600

Query: 488 QLLGKISELGEAP 500
            +L  ++ +   P
Sbjct: 601 TILKHMTGVASMP 613



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 79/345 (22%), Positives = 141/345 (40%), Gaps = 15/345 (4%)

Query: 207 PSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDA 266
           P+P  A +  L++        L  R   ++ Q Y  +    +    ++ +   ++ LI  
Sbjct: 125 PAPTGATYNALIR-------ALCRRADLRHAQRYLSL----MVRSGWRPDAFTFNSLILG 173

Query: 267 HAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPD 326
           + +   L+ A+ +  KM   G   D V+   L+  + + G +D A E F  L     QPD
Sbjct: 174 YCRTQQLDVAQDLFDKMPLRGFSQDAVSYAALIEGFCETGRVDEALELFRELE----QPD 229

Query: 327 KKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITN 386
              + +++    +A + + G+ ++  M   G   +   Y AL+  + +      A ++ N
Sbjct: 230 MYTHAALVKGLCDARRGEEGLYMLQKMKELGWRPATRAYAALVDLWCREQKAEEAEKMLN 289

Query: 387 IMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKN 446
            M      P   +CT +V AY + G    A   F+ M   G +P+     +M+  +    
Sbjct: 290 EMFDNGLVPCAVTCTAVVNAYCREGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVG 349

Query: 447 LLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQV 506
            + KA+ LL ++ + G EP   TY +L+        I  A +LL  +   G A       
Sbjct: 350 KVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIESAFRLLRLMEGNGLAADQYTYN 409

Query: 507 SLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGG 551
            L D   + G   +A      LE +  +     F  +INGL  GG
Sbjct: 410 VLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKGG 454



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 128/308 (41%), Gaps = 11/308 (3%)

Query: 278 RILKKMNENGI-VPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
           R+   M  +G   P   T   L+    +  +L  A+     +   G++PD   +NS+I+ 
Sbjct: 114 RLFAHMYHHGPPAPTGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILG 173

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           Y    Q  +   L D M   G  +    Y AL+  F + G V  A ++      E  QP 
Sbjct: 174 YCRTQQLDVAQDLFDKMPLRGFSQDAVSYAALIEGFCETGRVDEALELFR----ELEQPD 229

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           + +   LV+    A   ++       M  LG +P  R  A+++  + ++   ++A  +L 
Sbjct: 230 MYTHAALVKGLCDARRGEEGLYMLQKMKELGWRPATRAYAALVDLWCREQKAEEAEKMLN 289

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
           E+  +G  P   T T +V+   R   ++ A ++   +   G  P      ++   +   G
Sbjct: 290 EMFDNGLVPCAVTCTAVVNAYCREGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVG 349

Query: 517 IEKKALQALGFLEAKKEQ-MGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASER 573
              K  +A+  L+  +E  + PD   +  +I G    G ++ A R+  LME  G AA + 
Sbjct: 350 ---KVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIESAFRLLRLMEGNGLAADQY 406

Query: 574 LKVALISS 581
               LI +
Sbjct: 407 TYNVLIDA 414



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 2/129 (1%)

Query: 242 KVAELV--LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLV 299
           +V  LV  + E+    N   Y+ L++   K     DA  +L  M  +G +P++++   L+
Sbjct: 684 EVTSLVSHMKEDDLPLNEDIYTSLVNCFCKLRMYPDAWALLCSMIGHGFLPNLISYQYLL 743

Query: 300 HMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
             ++  G  DRAKE F  LR   +  D+ V+  +I   +  G P +   ++ ++     +
Sbjct: 744 SGFTAEGQADRAKEIFRGLRWKEYNTDEIVWKIIIDGLIRQGHPDMCHDMISILEQMKCK 803

Query: 360 RSEEIYLAL 368
            S+E Y  L
Sbjct: 804 PSDETYAML 812



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 64/313 (20%), Positives = 120/313 (38%), Gaps = 29/313 (9%)

Query: 246 LVLSEESFQTNVR----DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM 301
           L   +E  Q +V+    +Y+ +ID   KE     A RI  +M   G  PD+VT T  V  
Sbjct: 495 LSFIDEMLQKDVKPSTVNYTIVIDRLFKERNYGLATRIWGQMVSLGCSPDVVTYTTSVRA 554

Query: 302 YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS 361
           Y   G L  A+     ++  G   D   YN++I  + + G+    ++++  M  +G+   
Sbjct: 555 YCNEGRLHEAENVVMEMKKGGIIVDAMAYNTLIDGHTSIGKTDHAVTILKHM--TGVASM 612

Query: 362 EEIYLALLRSFAQCGDVRGAG---QITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418
              +   +                + T++ +  E     E    L E   +   P  AR+
Sbjct: 613 PNHFTFFILLRHLLQRRLAEDVPLKTTSVWKTIELADVFE----LFELMKKNSVPSSARA 668

Query: 419 NFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLG 478
                             +++  + ++  LD+  +L+  +++D        YT LV+   
Sbjct: 669 YL----------------AILEGFSEERRLDEVTSLVSHMKEDDLPLNEDIYTSLVNCFC 712

Query: 479 RLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
           +L++  +A  LL  +   G  P       L   +   G   +A +    L  K+      
Sbjct: 713 KLRMYPDAWALLCSMIGHGFLPNLISYQYLLSGFTAEGQADRAKEIFRGLRWKEYNTDEI 772

Query: 539 DFERIINGLLAGG 551
            ++ II+GL+  G
Sbjct: 773 VWKIIIDGLIRQG 785


>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
          Length = 816

 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 138/313 (44%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ +ID   KE  +  A  + K+M + GI PD+VT + +VH   KA  +D+A+   
Sbjct: 220 DVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFL 279

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             + + G  PD   YN++I  Y + GQ K  + +   M    I         L+ S  + 
Sbjct: 280 RQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKY 339

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G ++ A  + + M ++   P + S T+++  Y   G        FD M+  G  PD    
Sbjct: 340 GKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTF 399

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +I AY    +LDKA+ +  E+   G +P   TY  ++  L R+  +++A +   ++ +
Sbjct: 400 NVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMID 459

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
            G  P       L   +   G   KA + +  +     ++    F  IIN L   G + D
Sbjct: 460 QGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMD 519

Query: 556 AQRVHGLMEAQGF 568
           AQ +  L    G 
Sbjct: 520 AQNIFDLTVNVGL 532



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 125/287 (43%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI  ++     ++A R+ K+M    I+PD+V    L+    K G +  A++ F+++ 
Sbjct: 294 YNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMA 353

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  PD   Y  M+  Y   G       L D+M+  GI      +  L++++A CG + 
Sbjct: 354 MKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLD 413

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  I N MR    +P + +   ++ A  + G  D A   F+ MI  G  PD      +I
Sbjct: 414 KAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLI 473

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             +     L KA  L+ E+  +G       +  +++ L +L  + +A+ +      +G  
Sbjct: 474 QGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLH 533

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
           P   +   L D Y   G  +KAL+    + +   +     +  ++NG
Sbjct: 534 PDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNG 580



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 103/222 (46%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           ++  ++ LI A+A    L+ A  I  +M ++G+ P +VT   ++    + G +D A E F
Sbjct: 395 DIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKF 454

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G  PDK  Y+ +I  +   G       L+  ++ +G+      + +++ +  + 
Sbjct: 455 NQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKL 514

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G V  A  I ++       P      +L++ Y   G  ++A   FD M+  G +P+    
Sbjct: 515 GRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGY 574

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
            +++  Y K   +D+ L+L  E+ + G +P    Y +++D L
Sbjct: 575 GTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGL 616



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/306 (21%), Positives = 130/306 (42%), Gaps = 6/306 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIV--PDIVTSTVLVHMYSKAGNLDRAKE 313
           +V  Y+ L+ +   +     A+ +L+ M E G V  PD+V    ++  + K G++++A +
Sbjct: 183 DVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACD 242

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            F+ +   G  PD   Y+S++ A   A       + +  M+  G+      Y  L+  ++
Sbjct: 243 LFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYS 302

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
             G  + A ++   MR +   P + +   L+ +  + G   +AR  FD M   G  PD  
Sbjct: 303 STGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVF 362

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
               M+  Y  K  L    +L   +  DG  P   T+ VL+       ++++A  +  ++
Sbjct: 363 SYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEM 422

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGG 551
            + G  P     +++     R G    A++   F +   + + PD   +  +I G    G
Sbjct: 423 RDHGVKPHVVTYMTVIAALCRIGKMDDAMEK--FNQMIDQGVVPDKYAYHCLIQGFCTHG 480

Query: 552 FLQDAQ 557
            L  A+
Sbjct: 481 SLLKAK 486



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 106/242 (43%), Gaps = 2/242 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  LI        L  A+ ++ ++  NG+  DIV    +++   K G +  A+  F+   
Sbjct: 469 YHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTV 528

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G  PD  VYN ++  Y   G+ +  + + D M+++GIE +   Y  L+  + + G + 
Sbjct: 529 NVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRID 588

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
               +   M  +  +P+     ++++   +AG    A+  F  M   G    ++CT S++
Sbjct: 589 EGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAM-NKCTYSIV 647

Query: 440 A-AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
                K    D+A+ L  EL     +    T   ++  + + + + EA+ L   IS  G 
Sbjct: 648 LRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGL 707

Query: 499 AP 500
            P
Sbjct: 708 VP 709



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 106/278 (38%), Gaps = 36/278 (12%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+D +     +E A R+   M   GI P++V    LV+ Y K G +D     F  + 
Sbjct: 539 YNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREML 598

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF--AQCGD 377
             G +P   +YN +I     AG+          M  SGI  ++  Y  +LR     +C D
Sbjct: 599 QKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFD 658

Query: 378 --------VRGAGQITNIM-------------RIEE------------FQPTLESCTLLV 404
                   +R      +I+             R+EE              P   + ++++
Sbjct: 659 EAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMI 718

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
               + G  ++A   F  M   G +PD R    ++    KKN + +A   L ++++  F 
Sbjct: 719 TNLLKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFS 778

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLL-GKISELGEAPP 501
               T  +LVD         E  + L  K   L EA P
Sbjct: 779 LEHLTAMLLVDLFSSKGTCREQIRFLPAKYHFLAEASP 816



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 111/276 (40%), Gaps = 14/276 (5%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           VLS  S+      Y+ L+D   + +  E A     ++   G+  D + ++ L+  + +A 
Sbjct: 108 VLSPTSYT-----YAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEA- 161

Query: 307 NLDRAKEAFESLRSH----GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE 362
              R  EA + L       G  PD   YN ++ +  N G+      L+ MM   G   S 
Sbjct: 162 --KRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSP 219

Query: 363 EI--YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
           ++  Y  ++  F + GDV  A  +   M      P L + + +V A  +A   D+A +  
Sbjct: 220 DVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFL 279

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
             M+  G  PD+    ++I  Y       +A+ +  E+ +    P       L+  L + 
Sbjct: 280 RQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKY 339

Query: 481 QLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
             I EA  +   ++  G+ P       + + YA  G
Sbjct: 340 GKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKG 375



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 91/207 (43%), Gaps = 8/207 (3%)

Query: 211 LAEWKELLQ----PSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDA 266
           L+ ++E+LQ    PS I +  ++D L E    +  KV    ++E     N   YS ++  
Sbjct: 591 LSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRG 650

Query: 267 HAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPD 326
             K  C ++A  + K++    +  DI+T   ++    +   ++ AK+ F S+   G  P 
Sbjct: 651 LFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPC 710

Query: 327 KKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITN 386
              Y+ MI   +  G  +    +   M  +G E    +   ++R   +  ++  AG   +
Sbjct: 711 AVTYSIMITNLLKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLS 770

Query: 387 IMRIEEFQPTLESCT--LLVEAYGQAG 411
             +I+E   +LE  T  LLV+ +   G
Sbjct: 771 --KIDERNFSLEHLTAMLLVDLFSSKG 795


>gi|449503889|ref|XP_004162218.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g16890, mitochondrial-like [Cucumis sativus]
          Length = 697

 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 109/232 (46%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L  +   +N+  Y+ +ID   K   ++ A  + + ++  GI P+IVT   L+  + + GN
Sbjct: 465 LINDGLISNIYSYNMVIDCLCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIGGFCRNGN 524

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D+A+E  E L    F+PD   +NS+I     A + +        M+   +  +   Y  
Sbjct: 525 MDKAQELLEMLLESRFRPDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWDVPPNVITYNI 584

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+ SF   GDV  +  +   M++   QP   S   L++ Y       +A   FD M+RLG
Sbjct: 585 LICSFCAIGDVSRSTHLLRQMKLHGIQPDTFSFNALIQGYTGKNRFQKAEKLFDSMLRLG 644

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
            +PD+    ++I +  K    DKA  + L ++++G  P   T ++  D L  
Sbjct: 645 IQPDNYTYGALIKSLCKSGRHDKAREIFLSMKENGCTPDSYTCSLFSDTLAH 696



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 77/164 (46%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           +L E  F+ ++  ++ LID   + +  E+A     +M E  + P+++T  +L+  +   G
Sbjct: 534 MLLESRFRPDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWDVPPNVITYNILICSFCAIG 593

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           ++ R+      ++ HG QPD   +N++I  Y    + +    L D M+  GI+     Y 
Sbjct: 594 DVSRSTHLLRQMKLHGIQPDTFSFNALIQGYTGKNRFQKAEKLFDSMLRLGIQPDNYTYG 653

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410
           AL++S  + G    A +I   M+     P   +C+L  +    +
Sbjct: 654 ALIKSLCKSGRHDKAREIFLSMKENGCTPDSYTCSLFSDTLAHS 697



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 63/326 (19%), Positives = 125/326 (38%), Gaps = 35/326 (10%)

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
            R Y+ ++DA  K N L+ A    ++M+ +  VPD  T  +L+H   + G +D A    +
Sbjct: 229 TRLYNAVMDALIKSNSLDLAYLKFQQMSSHNCVPDRFTYNILIHGVCRLGVVDEALRLMK 288

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
            +   G+ P+   Y  +I  + NA +      ++  M    +  +E    +L+    +C 
Sbjct: 289 QMEGLGYFPNVFTYTILIDGFFNAKRAGEAFKVLQTMKERNVVPNEATMRSLVHGVFRCI 348

Query: 377 DV--------------RGAGQIT--NIMRI-------------------EEFQPTLESCT 401
                           +G  Q+   NI+                     E + P+  +  
Sbjct: 349 APDKAFELLLEFVERKQGITQLVCDNILYCLSNNSMASEAVMFLIKTGKEGYVPSSSTFN 408

Query: 402 LLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD 461
           + +    +  D     + FD  ++ G KP      ++I A  K   ++     +  L  D
Sbjct: 409 ITLACVLKKLDLKVTCTVFDNCVQSGVKPGFSTYLTLIEALYKAGKMEIGNRYMDRLIND 468

Query: 462 GFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKA 521
           G      +Y +++D L + + ++ A ++   +   G +P      +L   + R G   KA
Sbjct: 469 GLISNIYSYNMVIDCLCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIGGFCRNGNMDKA 528

Query: 522 LQALGFLEAKKEQMGPDDFERIINGL 547
            + L  L   + +     F  +I+GL
Sbjct: 529 QELLEMLLESRFRPDIFTFNSLIDGL 554



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 42/227 (18%), Positives = 92/227 (40%)

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
            +A   L K  + G VP   T  + +    K  +L      F++    G +P    Y ++
Sbjct: 386 SEAVMFLIKTGKEGYVPSSSTFNITLACVLKKLDLKVTCTVFDNCVQSGVKPGFSTYLTL 445

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           I A   AG+ ++G   +D +I  G+  +   Y  ++    +   +  A ++   +     
Sbjct: 446 IEALYKAGKMEIGNRYMDRLINDGLISNIYSYNMVIDCLCKGKSMDRASEMFRDLHNRGI 505

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
            P + +   L+  + + G+ D+A+   + ++    +PD     S+I    + +  + A  
Sbjct: 506 SPNIVTYNTLIGGFCRNGNMDKAQELLEMLLESRFRPDIFTFNSLIDGLCQAHKHENAFG 565

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
              E+ +    P   TY +L+     +  ++ +  LL ++   G  P
Sbjct: 566 CFTEMVEWDVPPNVITYNILICSFCAIGDVSRSTHLLRQMKLHGIQP 612



 Score = 46.6 bits (109), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 81/189 (42%), Gaps = 1/189 (0%)

Query: 345 LGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
           L + L+  +  SG++ +EE+   L  S+ + G      ++   + +    PT      ++
Sbjct: 177 LSVDLLQQIKESGLKVTEELLCILFGSWGRLGLANYCVEVFGQIGLLGLNPTTRLYNAVM 236

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
           +A  ++   D A   F  M      PD      +I    +  ++D+AL L+ ++E  G+ 
Sbjct: 237 DALIKSNSLDLAYLKFQQMSSHNCVPDRFTYNILIHGVCRLGVVDEALRLMKQMEGLGYF 296

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ- 523
           P   TYT+L+D     +   EA ++L  + E    P      SL     R     KA + 
Sbjct: 297 PNVFTYTILIDGFFNAKRAGEAFKVLQTMKERNVVPNEATMRSLVHGVFRCIAPDKAFEL 356

Query: 524 ALGFLEAKK 532
            L F+E K+
Sbjct: 357 LLEFVERKQ 365



 Score = 44.3 bits (103), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 3/139 (2%)

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
           T E   +L  ++G+ G  +     F  +  LG  P  R   +++ A  K N LD A    
Sbjct: 193 TEELLCILFGSWGRLGLANYCVEVFGQIGLLGLNPTTRLYNAVMDALIKSNSLDLAYLKF 252

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
            ++      P   TY +L+  + RL +++EA +L+ ++  LG  P       L D +  A
Sbjct: 253 QQMSSHNCVPDRFTYNILIHGVCRLGVVDEALRLMKQMEGLGYFPNVFTYTILIDGFFNA 312

Query: 516 GIEKKALQALGFLEAKKEQ 534
              K+A +A   L+  KE+
Sbjct: 313 ---KRAGEAFKVLQTMKER 328



 Score = 42.4 bits (98), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 65/343 (18%), Positives = 124/343 (36%), Gaps = 41/343 (11%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRD---YSKLIDAHAKENCLE 274
           L P+   +  ++D L + N+     +A L   + S    V D   Y+ LI    +   ++
Sbjct: 225 LNPTTRLYNAVMDALIKSNS---LDLAYLKFQQMSSHNCVPDRFTYNILIHGVCRLGVVD 281

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           +A R++K+M   G  P++ T T+L+  +  A     A +  ++++     P++    S++
Sbjct: 282 EALRLMKQMEGLGYFPNVFTYTILIDGFFNAKRAGEAFKVLQTMKERNVVPNEATMRSLV 341

Query: 335 MAYVNAGQPKLGMSL--------------------------------VDMMITSGIE--- 359
                   P     L                                V  +I +G E   
Sbjct: 342 HGVFRCIAPDKAFELLLEFVERKQGITQLVCDNILYCLSNNSMASEAVMFLIKTGKEGYV 401

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
            S   +   L    +  D++    + +       +P   +   L+EA  +AG  +     
Sbjct: 402 PSSSTFNITLACVLKKLDLKVTCTVFDNCVQSGVKPGFSTYLTLIEALYKAGKMEIGNRY 461

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
            D +I  G   +      +I    K   +D+A  +  +L   G  P   TY  L+    R
Sbjct: 462 MDRLINDGLISNIYSYNMVIDCLCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIGGFCR 521

Query: 480 LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522
              +++A++LL  + E    P      SL D   +A   + A 
Sbjct: 522 NGNMDKAQELLEMLLESRFRPDIFTFNSLIDGLCQAHKHENAF 564


>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
          Length = 851

 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 122/268 (45%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ LI        L+       +M  NG +P++VT   L+  Y K G +D A    
Sbjct: 9   NVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLL 68

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           +S+ S G QP+   YN +I      G  K    +++ M   G    E  Y  LL  + + 
Sbjct: 69  KSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKE 128

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G+   A  I   M      P++ + T L+ +  +A + ++A   FD M   G +P++R  
Sbjct: 129 GNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTY 188

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I  + ++ LL++A  +L E+ + GF P   TY   +     L+ + EA  ++ ++ E
Sbjct: 189 TTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVE 248

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQ 523
            G AP      ++   + R G   +A Q
Sbjct: 249 KGLAPDVVSYSTIISGFCRKGELDRAFQ 276



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 142/320 (44%), Gaps = 16/320 (5%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +S +  Q N+  Y+ +I+   +E  +++A  IL++M   G  PD VT   L++ Y K GN
Sbjct: 71  MSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGN 130

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
             +A      +  +G  P    Y ++I +   A      M   D M   G+  +E  Y  
Sbjct: 131 FHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTT 190

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+  F++ G +  A +I N M    F P++ +    +  +      ++A      M+  G
Sbjct: 191 LIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKG 250

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD    +++I+ + +K  LD+A  +  E+ + G  P   TY+ L+  L  ++ + EA 
Sbjct: 251 LAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEAC 310

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL------GFLEAKKEQMGPD--D 539
            L  ++ ++G  P      +L + Y   G   KAL         GFL        PD   
Sbjct: 311 DLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFL--------PDAVT 362

Query: 540 FERIINGLLAGGFLQDAQRV 559
           +  +INGL      ++A+R+
Sbjct: 363 YSVLINGLNKQARTREAKRL 382



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 98/415 (23%), Positives = 178/415 (42%), Gaps = 52/415 (12%)

Query: 218 LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           +QP+ I +  +++ L RE + +  +++ E  +  + F  +   Y+ L++ + KE     A
Sbjct: 76  MQPNLISYNVIINGLCREGSMKEAWEILE-EMGYKGFTPDEVTYNTLLNGYCKEGNFHQA 134

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
             I  +M  NG+ P +VT T L++   KA NL+RA E F+ +R  G +P+++ Y ++I  
Sbjct: 135 LVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDG 194

Query: 337 YVNAGQPKLGMSLVDMMITSG-----------------IERSEEI--------------- 364
           +   G       +++ M  SG                 +ER EE                
Sbjct: 195 FSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPD 254

Query: 365 ---YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421
              Y  ++  F + G++  A Q+   M  +   P   + + L++   +     +A     
Sbjct: 255 VVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQ 314

Query: 422 YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ 481
            M+ +G  PD+    ++I AY  +  L+KAL+L  E+   GF P   TY+VL++ L +  
Sbjct: 315 EMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQA 374

Query: 482 LINEAEQLLGKISELGEAPP---------------FKIQVSLCDMYARAGIEKKALQALG 526
              EA++LL K+      P                FK  V+L   +   G+  +A +   
Sbjct: 375 RTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFE 434

Query: 527 FLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
            +  +  + G   +  II+G   GG L  A  ++  M   GF       + LI +
Sbjct: 435 SMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKA 489



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 133/295 (45%), Gaps = 6/295 (2%)

Query: 288 IVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGM 347
           + P++ T  +L+  +   G L +    F  +  +G  P+   YN++I AY   G+     
Sbjct: 6   VSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAF 65

Query: 348 SLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAY 407
            L+  M + G++ +   Y  ++    + G ++ A +I   M  + F P   +   L+  Y
Sbjct: 66  GLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGY 125

Query: 408 GQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGP 467
            + G+  QA      M+R G  P      ++I +  K   L++A+    ++   G  P  
Sbjct: 126 CKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNE 185

Query: 468 ATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGF 527
            TYT L+D   R  L+NEA ++L +++E G +P      +   ++    +E+   +ALG 
Sbjct: 186 RTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAF--IHGHCVLERME-EALGV 242

Query: 528 LEAKKEQ-MGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
           ++   E+ + PD   +  II+G    G L  A ++   M  +G +       +LI
Sbjct: 243 VQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLI 297



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 65/326 (19%), Positives = 138/326 (42%), Gaps = 19/326 (5%)

Query: 218 LQPSRIDWINLLDRLREQN--TQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLED 275
           L+P+   +  L+D    Q    + Y  + E+  +E  F  +V  Y+  I  H     +E+
Sbjct: 181 LRPNERTYTTLIDGFSRQGLLNEAYRILNEM--TESGFSPSVVTYNAFIHGHCVLERMEE 238

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A  ++++M E G+ PD+V+ + ++  + + G LDRA +  + +   G  PD   Y+S+I 
Sbjct: 239 ALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQ 298

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
                 +      L   M+  G+   E  Y  L+ ++   GD+  A  + + M  + F P
Sbjct: 299 GLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLP 358

Query: 396 TLESCTLLVEAYGQAGDPDQARS---------------NFDYMIRLGHKPDDRCTASMIA 440
              + ++L+    +     +A+                 +D +I      + +   ++I 
Sbjct: 359 DAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIK 418

Query: 441 AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
            +  K L+ +A  +   + +   +PG A Y V++    R   + +A  L  ++   G  P
Sbjct: 419 GFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVP 478

Query: 501 PFKIQVSLCDMYARAGIEKKALQALG 526
                ++L     + G+ ++  + +G
Sbjct: 479 HTVTVITLIKALFKEGMNEEMSEVIG 504


>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
          Length = 585

 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 144/332 (43%), Gaps = 4/332 (1%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           E FQ NV  Y  LI+   K      A R+L+ M +    PD+V  T ++    K   +  
Sbjct: 166 EGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTE 225

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A   F  +   G  PD   Y S+I +  N  + K   +L++ MI S I     I+  ++ 
Sbjct: 226 AFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVD 285

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
           +  + G +  A  + ++M I   +P + +   L++ +    + D+A   FD M+  G+ P
Sbjct: 286 ALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAP 345

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           +     ++I  Y K   +DKA  L  E+ +    P   TY  L+  L  +  + +A  L 
Sbjct: 346 NVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALF 405

Query: 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLL 548
            ++   G+ P       L D   +     +A+  L  +E     M PD   +  +I+G+ 
Sbjct: 406 HEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEG--SNMDPDIQIYTIVIDGMC 463

Query: 549 AGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
             G L+ A+ +   + ++G   + R    +I+
Sbjct: 464 RAGELEAARDIFSNLSSKGLRPNVRTYTIMIN 495



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/280 (21%), Positives = 127/280 (45%), Gaps = 15/280 (5%)

Query: 211 LAEWKEL-----------LQPSRIDWINLLDRLREQN--TQLYFKVAELVLSEESFQTNV 257
           L EWK +           + P  + +  ++D L ++   T+ +  V  +++     + NV
Sbjct: 255 LCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMII--RGVEPNV 312

Query: 258 RDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFES 317
             Y+ L+D H  ++ +++A ++   M  NG  P++++   L++ Y K   +D+A   FE 
Sbjct: 313 VTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEE 372

Query: 318 LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
           +      P+   YN+++    + G+ +  ++L   M+  G       Y  LL    +   
Sbjct: 373 MCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSH 432

Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
           +  A  +   +      P ++  T++++   +AG+ + AR  F  +   G +P+ R    
Sbjct: 433 LDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTI 492

Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
           MI    ++ LLD+A  L +E++ +G  P   TY  +   L
Sbjct: 493 MINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGL 532



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 155/365 (42%), Gaps = 12/365 (3%)

Query: 211 LAEWKELLQ----PSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQT--NVRDYSKLI 264
           L+ +  +L     PS +D+  LL  + +  T+ Y  V  L    +SF    +V   + LI
Sbjct: 52  LSSFNRMLHMHPPPSTVDFNRLLTSIAK--TKQYPTVFSLSNQMDSFGIPPDVYTLNILI 109

Query: 265 DAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQ 324
           ++    N    A  +L K+ + G+ PD  T T L+      G +  A   F+ +   GFQ
Sbjct: 110 NSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQ 169

Query: 325 PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQI 384
           P+   Y ++I      G     + L+  M     +    +Y +++ S  +   V  A  +
Sbjct: 170 PNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNL 229

Query: 385 TNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGK 444
            + M  +   P + + T L+ +     +     +  + MI     PD    ++++ A  K
Sbjct: 230 FSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCK 289

Query: 445 KNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKI 504
           +  + +A +++  +   G EP   TY  L+D       ++EA ++   +   G AP    
Sbjct: 290 EGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVIS 349

Query: 505 QVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGL 562
             +L + Y +  I++       F E  ++++ P+   +  +++GL   G LQDA  +   
Sbjct: 350 YNTLINGYCK--IQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHE 407

Query: 563 MEAQG 567
           M A G
Sbjct: 408 MVAHG 412



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 62/306 (20%), Positives = 117/306 (38%), Gaps = 3/306 (0%)

Query: 267 HAKE---NCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGF 323
           H+K    N L+DA     +M      P  V    L+   +K             + S G 
Sbjct: 39  HSKSLNFNTLDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGI 98

Query: 324 QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQ 383
            PD    N +I ++ +  +P    S++  ++  G++     +  L+R     G +  A  
Sbjct: 99  PPDVYTLNILINSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALH 158

Query: 384 ITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYG 443
           + + M  E FQP + +   L+    + G+ + A      M +   +PD     S+I +  
Sbjct: 159 LFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLC 218

Query: 444 KKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFK 503
           K   + +A NL  ++   G  P   TYT L+  L  L        LL ++      P   
Sbjct: 219 KDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVV 278

Query: 504 IQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLM 563
           I  ++ D   + G   +A   +  +  +  +     +  +++G      + +A +V   M
Sbjct: 279 IFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTM 338

Query: 564 EAQGFA 569
              G+A
Sbjct: 339 VHNGYA 344


>gi|125569916|gb|EAZ11431.1| hypothetical protein OsJ_01299 [Oryza sativa Japonica Group]
          Length = 563

 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 151/331 (45%), Gaps = 1/331 (0%)

Query: 218 LQPSRIDWINLLDRLREQN-TQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L+P+      L+D L +   T+  F++   ++   S++ NV  Y+ +I  + +E  L  A
Sbjct: 174 LKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARA 233

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
           E +L +M E G+ P+  T T L+  + K G+ DRA E    ++  GF P+   YN++I  
Sbjct: 234 EMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDG 293

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           +   G+ +    ++ M  + G++  +  Y  L+    + G +  A  + + M      P 
Sbjct: 294 FCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENGCCPD 353

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           +E+ T L+  Y Q    ++++  FD  + +G  P  +   SMIA Y K      AL +  
Sbjct: 354 IEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTLALRVFE 413

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
            + ++G      TY  L+  L +   + EA+ L   + +    P    +V+L   Y R  
Sbjct: 414 RMVQNGCFADSITYGALISGLCKESRLEEAKALYEGMLDKRLVPCEVTRVTLTFEYCRRE 473

Query: 517 IEKKALQALGFLEAKKEQMGPDDFERIINGL 547
               A+  L  L+ +++    D   R ++ L
Sbjct: 474 KTSIAVSVLDRLDKRQQVHTVDVVVRKLSAL 504



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/324 (22%), Positives = 138/324 (42%), Gaps = 1/324 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV +Y+  ID   K   ++ A  +L++M   G+ P++ T T L+    K G  +RA   F
Sbjct: 142 NVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRLF 201

Query: 316 ESL-RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
             L +S  ++P+   Y  MI  Y   G+      L+  M+  G++ +   Y  L+    +
Sbjct: 202 LKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCK 261

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
            G    A ++ N M+ E F P + +   +++ + + G   +A          G K D   
Sbjct: 262 GGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKIT 321

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
              +I  + K+  +  AL+L   + ++G  P    YT L+    + + + E+++   K  
Sbjct: 322 YTILITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCL 381

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQ 554
            +G  P  +   S+   Y + G    AL+    +           +  +I+GL     L+
Sbjct: 382 MIGLLPTKQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGALISGLCKESRLE 441

Query: 555 DAQRVHGLMEAQGFAASERLKVAL 578
           +A+ ++  M  +     E  +V L
Sbjct: 442 EAKALYEGMLDKRLVPCEVTRVTL 465



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/218 (20%), Positives = 92/218 (42%), Gaps = 34/218 (15%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
            +D     ++M E G  P++V  T  +    K   + +A    E +   G +P+   + +
Sbjct: 124 FKDVSEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTT 183

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I      G  K+G +          ER+  ++L L++S                     
Sbjct: 184 LI-----DGLCKIGWT----------ERAFRLFLKLIKS-------------------SS 209

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
           ++P + + T+++  Y + G   +A      M+  G KP+     ++I  + K    D+A 
Sbjct: 210 YKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAF 269

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
            L+ +++++GF P   TY  ++D   +   I EA ++L
Sbjct: 270 ELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVL 307



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 58/272 (21%), Positives = 105/272 (38%), Gaps = 1/272 (0%)

Query: 298 LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG 357
           +V  + +AG L  A +    +RSHG     +  N ++   +  G       + D M  +G
Sbjct: 9   MVAAFGEAGRLPEAADMVLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAG 68

Query: 358 IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
           +      + AL+    + G V     +   M    F     +CT++V +  + G      
Sbjct: 69  VSPMNRGFGALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVS 128

Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
             F  M+  G  P+     + I    K+  + +A ++L E+   G +P   T+T L+D L
Sbjct: 129 EFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGL 188

Query: 478 GRLQLINEAEQLLGK-ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG 536
            ++     A +L  K I      P       +   Y R G   +A   L  +  +  +  
Sbjct: 189 CKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPN 248

Query: 537 PDDFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
            + +  +I G   GG    A  +   M+ +GF
Sbjct: 249 TNTYTTLIGGHCKGGSFDRAFELMNKMKQEGF 280


>gi|449436409|ref|XP_004135985.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Cucumis sativus]
          Length = 868

 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 156/334 (46%), Gaps = 8/334 (2%)

Query: 226 INLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNE 285
           I+ L RL +   +L   V E  LSE  +   V  +S LI A+ K    ++A ++ + M  
Sbjct: 194 ISTLGRLGK--VELAKGVFETALSE-GYGNTVFAFSALISAYGKSGYFDEAIKVFESMKV 250

Query: 286 NGIVPDIVTSTVLVHMYSKAG-NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPK 344
           +G+ P++VT   ++    K G    R  E FE +  +G QPD+  YNS++      G  +
Sbjct: 251 SGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWE 310

Query: 345 LGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
              +L + MI  GI++    Y  LL +  + G +  A +I   M  ++  P + + + + 
Sbjct: 311 AARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMA 370

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
           + Y +AG  + A + ++ M  LG   D     ++++ Y K    + AL +  E+   G +
Sbjct: 371 DGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFEDALKVCKEMGSSGVK 430

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQA 524
               TY  L+D  G+    NE  ++  ++ +    P      +L D+Y++  + ++A++ 
Sbjct: 431 KDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEV 490

Query: 525 LGFLEAKKEQMGPDD--FERIINGLLAGGFLQDA 556
             F E K+  +  D   +  +IN L   G +  A
Sbjct: 491 --FREFKQAGLKADVVLYSELINALCKNGLVDSA 522



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 129/267 (48%), Gaps = 10/267 (3%)

Query: 218 LQPSRIDWINLL-----DRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC 272
           +QP RI + +LL       L E    L+ ++ +  + ++ F      Y+ L+DA  K   
Sbjct: 289 VQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFT-----YNTLLDAVCKGGQ 343

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           ++ A  I+ +M    I+P++VT + +   Y+KAG L+ A   +  ++  G   D+  YN+
Sbjct: 344 MDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNT 403

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           ++  Y   G+ +  + +   M +SG+++    Y ALL  + + G      ++   M+ + 
Sbjct: 404 LLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDR 463

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P L + + L++ Y +    ++A   F    + G K D    + +I A  K  L+D A+
Sbjct: 464 VFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVDSAV 523

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGR 479
            LL E+ K+G  P   TY  ++D  GR
Sbjct: 524 LLLDEMTKEGIRPNVVTYNSIIDAFGR 550



 Score = 40.8 bits (94), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 18/77 (23%), Positives = 39/77 (50%)

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           ++   G+ G  + A+  F+  +  G+       +++I+AYGK    D+A+ +   ++  G
Sbjct: 193 MISTLGRLGKVELAKGVFETALSEGYGNTVFAFSALISAYGKSGYFDEAIKVFESMKVSG 252

Query: 463 FEPGPATYTVLVDWLGR 479
            +P   TY  ++D  G+
Sbjct: 253 LKPNLVTYNAVIDACGK 269


>gi|242069921|ref|XP_002450237.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
 gi|241936080|gb|EES09225.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
          Length = 757

 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 143/317 (45%), Gaps = 7/317 (2%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENG---IVPDIVTSTVLVHMYSKAGNLDRAK 312
           +V  YS L+     E   E+A  +L  M ++G     P++VT T ++    KA  +DRAK
Sbjct: 163 DVFSYSILLKGFCNEKRAEEALELLSMMADDGDGSHTPNVVTYTTVIDGLCKAQMVDRAK 222

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
             F+ +   G +P+   Y  +I  Y++ G+ K  + ++  M T G++    IY  LL   
Sbjct: 223 GVFQHMIDKGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQEMSTHGLQPDCYIYAVLLDYL 282

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + G    A  I + +  +  +P +    +L+  Y   G   +  S  D M+  G  PD 
Sbjct: 283 CKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYATEGSLSEMHSFLDLMVGNGVSPDH 342

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
                M  AY KK ++D+A+++  ++ +    P   TY  L+D L +L  +++A     +
Sbjct: 343 HIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDALCKLGRVDDAVLKFNQ 402

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAG 550
           + + G  P   +  SL  +Y    ++K       F E   + +  D   F  ++  L   
Sbjct: 403 MIDEGMTPDIFVFSSL--VYGLCTVDKWEKAEELFFEVLDQGIRLDTVFFNTLMCNLCRE 460

Query: 551 GFLQDAQRVHGLMEAQG 567
           G + +AQR+  LM   G
Sbjct: 461 GRVMEAQRLIDLMLRVG 477



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/358 (21%), Positives = 153/358 (42%), Gaps = 28/358 (7%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           ++  + N   Y+ LI  +      ++  ++L++M+ +G+ PD     VL+    K G   
Sbjct: 230 DKGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQEMSTHGLQPDCYIYAVLLDYLCKNGRCT 289

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A+  F+S+   G +P+  +Y  ++  Y   G      S +D+M+ +G+     I+  + 
Sbjct: 290 EARNIFDSVIRKGIKPNVTIYGILLHGYATEGSLSEMHSFLDLMVGNGVSPDHHIFNIMF 349

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
            ++A+   +  A  I + MR +   P + +   L++A  + G  D A   F+ MI  G  
Sbjct: 350 CAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDALCKLGRVDDAVLKFNQMIDEGMT 409

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD    +S++      +  +KA  L  E+   G       +  L+  L R   + EA++L
Sbjct: 410 PDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQGIRLDTVFFNTLMCNLCREGRVMEAQRL 469

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL--------------------GFLE 529
           +  +  +G  P      +L D +   G   +A + L                    G+ +
Sbjct: 470 IDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSIGLKPDKVTYNTLLHGYCK 529

Query: 530 AKKEQMGPDDFERIINGLLAGGFLQDAQR----VHGLMEAQGFAASERLKVALISSQT 583
           A++     DD   +   +L  G   D       +HGL +   F+ ++ L +++I+S+T
Sbjct: 530 ARR----IDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRT 583



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 136/311 (43%), Gaps = 2/311 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++ +  A+AK+  +++A  I  KM +  + P+IVT   L+    K G +D A   F  + 
Sbjct: 345 FNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDALCKLGRVDDAVLKFNQMI 404

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  PD  V++S++       + +    L   ++  GI      +  L+ +  + G V 
Sbjct: 405 DEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQGIRLDTVFFNTLMCNLCREGRVM 464

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++ ++M     +P + S   LV+ +   G  D+A    D ++ +G KPD     +++
Sbjct: 465 EAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSIGLKPDKVTYNTLL 524

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL-LGKISELGE 498
             Y K   +D A +L  E+   G  P   TY  ++  L +    +EA++L L  I+   +
Sbjct: 525 HGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQ 584

Query: 499 APPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQR 558
              +   + + +   +     +A +    L +K  Q+       +I  LL GG  +DA  
Sbjct: 585 MNIYTYNI-IINGLCKNNFVDEAFKMFHSLCSKDLQLDIFTANIMIGALLKGGRKEDAMD 643

Query: 559 VHGLMEAQGFA 569
           +   + A G  
Sbjct: 644 LFATISAYGLV 654



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 81/360 (22%), Positives = 132/360 (36%), Gaps = 54/360 (15%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +S    Q +   Y+ L+D   K     +A  I   +   GI P++    +L+H Y+  G+
Sbjct: 263 MSTHGLQPDCYIYAVLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYATEGS 322

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L       + +  +G  PD  ++N M  AY         M + D M    +  +   Y A
Sbjct: 323 LSEMHSFLDLMVGNGVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGA 382

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLES--------CT---------LLVEAYGQA 410
           L+ +  + G V  A    N M  E   P +          CT         L  E   Q 
Sbjct: 383 LIDALCKLGRVDDAVLKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQG 442

Query: 411 ------------------GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
                             G   +A+   D M+R+G +PD     +++  +     +D+A 
Sbjct: 443 IRLDTVFFNTLMCNLCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAA 502

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
            LL  +   G +P   TY  L+    + + I++A  L  ++   G  P         D+ 
Sbjct: 503 KLLDVIVSIGLKPDKVTYNTLLHGYCKARRIDDAYSLFREMLMKGLTP---------DVV 553

Query: 513 ARAGIEKKALQALGFLEAK---------KEQMGPDDFERIINGLLAGGFLQDAQRV-HGL 562
               I     Q   F EAK         + QM    +  IINGL    F+ +A ++ H L
Sbjct: 554 TYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNIIINGLCKNNFVDEAFKMFHSL 613



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 110/266 (41%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ L+D H     +++A ++L  +   G+ PD VT   L+H Y KA  +D A   F
Sbjct: 481 DVISYNTLVDGHCLTGRIDEAAKLLDVIVSIGLKPDKVTYNTLLHGYCKARRIDDAYSLF 540

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G  PD   YN+++      G+      L   MI S  + +   Y  ++    + 
Sbjct: 541 REMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNIIINGLCKN 600

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
             V  A ++ + +  ++ Q  + +  +++ A  + G  + A   F  +   G  PD    
Sbjct: 601 NFVDEAFKMFHSLCSKDLQLDIFTANIMIGALLKGGRKEDAMDLFATISAYGLVPDVETY 660

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +     K+  L++   L   +E++G  P       LV WL     IN A   L K+ E
Sbjct: 661 CLIAENLIKEGSLEELDELFSAMEENGTAPNSRMLNALVRWLLHRGDINRAGAYLSKLDE 720

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKA 521
              +        L  +Y+R   ++ A
Sbjct: 721 KNFSLEASTTSMLISIYSRGEYQQLA 746



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 43/203 (21%), Positives = 88/203 (43%), Gaps = 4/203 (1%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLS--EESFQTNVRDYSKLIDAHAKENCLED 275
           L P  + +  +L  L +  T  + +  EL LS      Q N+  Y+ +I+   K N +++
Sbjct: 548 LTPDVVTYNTILHGLFQ--TGRFSEAKELYLSMINSRTQMNIYTYNIIINGLCKNNFVDE 605

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A ++   +    +  DI T+ +++    K G  + A + F ++ ++G  PD + Y  +  
Sbjct: 606 AFKMFHSLCSKDLQLDIFTANIMIGALLKGGRKEDAMDLFATISAYGLVPDVETYCLIAE 665

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
             +  G  +    L   M  +G   +  +  AL+R     GD+  AG   + +  + F  
Sbjct: 666 NLIKEGSLEELDELFSAMEENGTAPNSRMLNALVRWLLHRGDINRAGAYLSKLDEKNFSL 725

Query: 396 TLESCTLLVEAYGQAGDPDQARS 418
              + ++L+  Y +      A+S
Sbjct: 726 EASTTSMLISIYSRGEYQQLAKS 748


>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Glycine max]
          Length = 623

 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 94/382 (24%), Positives = 161/382 (42%), Gaps = 43/382 (11%)

Query: 247 VLSEESFQTNVRD----YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMY 302
           VL  E F+ N+R     ++ +I+   KE  L+ A+  +  M   G+ P++VT   ++H +
Sbjct: 202 VLYAEMFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGH 261

Query: 303 SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE 362
              G   RA+  F++++  G +PD   YNS I      G+ +    L+  M+  G+  + 
Sbjct: 262 CLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNA 321

Query: 363 EIYLALLRSFAQCGDVRGA--------------------------------GQITNI--- 387
             Y AL+  +   GD+  A                                G   N+   
Sbjct: 322 VTYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKE 381

Query: 388 MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447
           MR +   P   +  +L+  Y + GD  +A    D M+  G +P      S+I   GK+N 
Sbjct: 382 MREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNR 441

Query: 448 LDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVS 507
           + +A  L  +++++G  P    +  L+D       I+ A QLL ++  +   P      +
Sbjct: 442 MKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNT 501

Query: 508 LCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEA 565
           L   Y R G  ++A Q L   E K+  + PD   +  +I+G    G ++DA RV   M  
Sbjct: 502 LMQGYCREGKVEEARQLLD--EMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMT 559

Query: 566 QGFAASERLKVALISSQTFNRQ 587
            GF  +     ALI     N++
Sbjct: 560 TGFDPTILTYNALIQGLCKNQE 581



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 112/241 (46%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+  I A   E  + DA+ ++K+M E G++PD VT  +L++ Y + G+  RA    + + 
Sbjct: 359 YNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMV 418

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G QP    Y S+I       + K   +L   +   G+     ++ AL+      G++ 
Sbjct: 419 GKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNID 478

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A Q+   M   +  P   +   L++ Y + G  ++AR   D M R G KPD     ++I
Sbjct: 479 RAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLI 538

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
           + Y K+  +  A  +  E+   GF+P   TY  L+  L + Q    AE+LL ++   G  
Sbjct: 539 SGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQGLCKNQEGEHAEELLKEMVSKGIT 598

Query: 500 P 500
           P
Sbjct: 599 P 599



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 94/191 (49%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           +  Q  +  Y+ LI    K N +++A+ +  K+ + G++PDI+    L+  +   GN+DR
Sbjct: 420 KGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDR 479

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A +  + + +    PD+  YN+++  Y   G+ +    L+D M   GI+     Y  L+ 
Sbjct: 480 AFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLIS 539

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
            +++ GD++ A ++ + M    F PT+ +   L++   +  + + A      M+  G  P
Sbjct: 540 GYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQGLCKNQEGEHAEELLKEMVSKGITP 599

Query: 431 DDRCTASMIAA 441
           DD    S+I A
Sbjct: 600 DDSTYLSIIEA 610



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 84/160 (52%), Gaps = 6/160 (3%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLS---EESFQTNVRDYSKLIDAHAKENCLE 274
           +QP+ + + +L+  L ++N     K A+ + S   +E    ++  ++ LID H     ++
Sbjct: 422 IQPTLVTYTSLIYVLGKRNR---MKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNID 478

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
            A ++LK+M+   ++PD +T   L+  Y + G ++ A++  + ++  G +PD   YN++I
Sbjct: 479 RAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLI 538

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
             Y   G  K    + D M+T+G + +   Y AL++   +
Sbjct: 539 SGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQGLCK 578



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 98/230 (42%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E+    +   ++ LI+ + +    + A  +L +M   GI P +VT T L+++  K   
Sbjct: 382 MREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNR 441

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A   F  ++  G  PD  V+N++I  +   G       L+  M    +   E  Y  
Sbjct: 442 MKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNT 501

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L++ + + G V  A Q+ + M+    +P   S   L+  Y + GD   A    D M+  G
Sbjct: 502 LMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTTG 561

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
             P      ++I    K    + A  LL E+   G  P  +TY  +++ +
Sbjct: 562 FDPTILTYNALIQGLCKNQEGEHAEELLKEMVSKGITPDDSTYLSIIEAM 611



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 61/121 (50%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+  + +E  +E+A ++L +M   GI PD ++   L+  YSK G++  A    + + 
Sbjct: 499 YNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMM 558

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + GF P    YN++I       + +    L+  M++ GI   +  YL+++ +     D+ 
Sbjct: 559 TTGFDPTILTYNALIQGLCKNQEGEHAEELLKEMVSKGITPDDSTYLSIIEAMETVDDLE 618

Query: 380 G 380
           G
Sbjct: 619 G 619


>gi|15242557|ref|NP_195906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181167|sp|Q9LYZ9.1|PP362_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g02860
 gi|7413561|emb|CAB86040.1| putative protein [Arabidopsis thaliana]
 gi|332003145|gb|AED90528.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 819

 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 80/355 (22%), Positives = 154/355 (43%), Gaps = 40/355 (11%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L E+ F  +V  Y+ LI A A      +A  + KKM E+G  P ++T  V+++++ K G 
Sbjct: 199 LQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGT 258

Query: 308 ------------------------------------LDRAKEAFESLRSHGFQPDKKVYN 331
                                                  A + FE +++ GF  DK  YN
Sbjct: 259 PWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYN 318

Query: 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391
           +++  Y  + +PK  M +++ M+ +G   S   Y +L+ ++A+ G +  A ++ N M  +
Sbjct: 319 ALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEK 378

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
             +P + + T L+  + +AG  + A S F+ M   G KP+     + I  YG +    + 
Sbjct: 379 GTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEM 438

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
           + +  E+   G  P   T+  L+   G+  + +E   +  ++   G  P  +   +L   
Sbjct: 439 MKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISA 498

Query: 512 YARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLME 564
           Y+R G  ++A+    +       + PD   +  ++  L  GG  + +++V   ME
Sbjct: 499 YSRCGSFEQAMTV--YRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEME 551



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 139/322 (43%), Gaps = 37/322 (11%)

Query: 245 ELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK 304
           E+VL+   F  ++  Y+ LI A+A++  L++A  +  +M E G  PD+ T T L+  + +
Sbjct: 339 EMVLN--GFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFER 396

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
           AG ++ A   FE +R+ G +P+   +N+ I  Y N G+    M + D +   G+      
Sbjct: 397 AGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVT 456

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
           +  LL  F Q G       +   M+   F P  E+   L+ AY + G  +QA + +  M+
Sbjct: 457 WNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRML 516

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYT------------- 471
             G  PD     +++AA  +  + +++  +L E+E    +P   TY              
Sbjct: 517 DAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIG 576

Query: 472 ----------------------VLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLC 509
                                  LV    +  L+ EAE+   ++ E G +P      S+ 
Sbjct: 577 LMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMV 636

Query: 510 DMYARAGIEKKALQALGFLEAK 531
            +Y R  +  KA   L +++ +
Sbjct: 637 SIYGRRQMVAKANGVLDYMKER 658



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 124/264 (46%), Gaps = 2/264 (0%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F  +   Y+ L+D + K +  ++A ++L +M  NG  P IVT   L+  Y++ G LD A 
Sbjct: 310 FSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAM 369

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           E    +   G +PD   Y +++  +  AG+ +  MS+ + M  +G + +   + A ++ +
Sbjct: 370 ELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMY 429

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
              G      +I + + +    P + +   L+  +GQ G   +    F  M R G  P+ 
Sbjct: 430 GNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPER 489

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               ++I+AY +    ++A+ +   +   G  P  +TY  ++  L R  +  ++E++L +
Sbjct: 490 ETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAE 549

Query: 493 ISELGEAPPFKIQ-VSLCDMYARA 515
           + E G   P ++   SL   YA  
Sbjct: 550 M-EDGRCKPNELTYCSLLHAYANG 572



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/313 (22%), Positives = 133/313 (42%), Gaps = 3/313 (0%)

Query: 219 QPSRIDWINLLDRLREQNTQLYFKVAELV--LSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           +P+ I +  +L+   +  T  + K+  LV  +  +    +   Y+ LI    + +  ++A
Sbjct: 240 KPTLITYNVILNVFGKMGTP-WNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEA 298

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
            ++ ++M   G   D VT   L+ +Y K+     A +    +  +GF P    YNS+I A
Sbjct: 299 AQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISA 358

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           Y   G     M L + M   G +     Y  LL  F + G V  A  I   MR    +P 
Sbjct: 359 YARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPN 418

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           + +    ++ YG  G   +    FD +   G  PD     +++A +G+  +  +   +  
Sbjct: 419 ICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFK 478

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
           E+++ GF P   T+  L+    R     +A  +  ++ + G  P      ++    AR G
Sbjct: 479 EMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGG 538

Query: 517 IEKKALQALGFLE 529
           + +++ + L  +E
Sbjct: 539 MWEQSEKVLAEME 551



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/313 (22%), Positives = 136/313 (43%), Gaps = 2/313 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  ++  I  +       +  +I  ++N  G+ PDIVT   L+ ++ + G        F
Sbjct: 418 NICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVF 477

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + ++  GF P+++ +N++I AY   G  +  M++   M+ +G+      Y  +L + A+ 
Sbjct: 478 KEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARG 537

Query: 376 GDVRGAGQITNIMRIEEFQPT-LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
           G    + ++   M     +P  L  C+LL  AY    +     S  + +     +P    
Sbjct: 538 GMWEQSEKVLAEMEDGRCKPNELTYCSLL-HAYANGKEIGLMHSLAEEVYSGVIEPRAVL 596

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
             +++    K +LL +A     EL++ GF P   T   +V   GR Q++ +A  +L  + 
Sbjct: 597 LKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMK 656

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQ 554
           E G  P      SL  M++R+    K+ + L  + AK  +     +  +I        ++
Sbjct: 657 ERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMR 716

Query: 555 DAQRVHGLMEAQG 567
           DA R+   M   G
Sbjct: 717 DASRIFSEMRNSG 729



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 109/246 (44%), Gaps = 11/246 (4%)

Query: 281 KKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNA 340
           + M +N +V       +++ M  K G +  A   F  L+  GF  D   Y S+I A+ N+
Sbjct: 168 QSMLDNSVV------AIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANS 221

Query: 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNI---MRIEEFQPTL 397
           G+ +  +++   M   G + +   Y  +L  F + G      +IT++   M+ +   P  
Sbjct: 222 GRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGT--PWNKITSLVEKMKSDGIAPDA 279

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
            +   L+    +     +A   F+ M   G   D     +++  YGK +   +A+ +L E
Sbjct: 280 YTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNE 339

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI 517
           +  +GF P   TY  L+    R  +++EA +L  +++E G  P      +L   + RAG 
Sbjct: 340 MVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGK 399

Query: 518 EKKALQ 523
            + A+ 
Sbjct: 400 VESAMS 405



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 63/336 (18%), Positives = 143/336 (42%), Gaps = 14/336 (4%)

Query: 218 LQPSRIDWINLL-----DRLREQNTQLY--FKVAELVLSEESFQTNVRDYSKLIDAHAKE 270
           L P  + W  LL     + +  + + ++   K A  V   E+F T       LI A+++ 
Sbjct: 450 LSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNT-------LISAYSRC 502

Query: 271 NCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVY 330
              E A  + ++M + G+ PD+ T   ++   ++ G  +++++    +     +P++  Y
Sbjct: 503 GSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTY 562

Query: 331 NSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRI 390
            S++ AY N  +  L  SL + + +  IE    +   L+   ++C  +  A +  + ++ 
Sbjct: 563 CSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKE 622

Query: 391 EEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDK 450
             F P + +   +V  YG+     +A    DYM   G  P      S++  + +     K
Sbjct: 623 RGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGK 682

Query: 451 ALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCD 510
           +  +L E+   G +P   +Y  ++    R   + +A ++  ++   G  P      +   
Sbjct: 683 SEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIG 742

Query: 511 MYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
            YA   + ++A+  + ++     +   + +  I++G
Sbjct: 743 SYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDG 778



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 99/242 (40%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  L+ A+A    +     + +++    I P  V    LV + SK   L  A+ AF  L+
Sbjct: 562 YCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELK 621

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             GF PD    NSM+  Y           ++D M   G   S   Y +L+   ++  D  
Sbjct: 622 ERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFG 681

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            + +I   +  +  +P + S   ++ AY +      A   F  M   G  PD     + I
Sbjct: 682 KSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFI 741

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            +Y   ++ ++A+ ++  + K G  P   TY  +VD   +L   +EA+  +  +  L   
Sbjct: 742 GSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAKLFVEDLRNLDPH 801

Query: 500 PP 501
            P
Sbjct: 802 AP 803



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/170 (21%), Positives = 73/170 (42%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L E  F  ++   + ++  + +   +  A  +L  M E G  P + T   L++M+S++ +
Sbjct: 620 LKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSAD 679

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
             +++E    + + G +PD   YN++I AY    + +    +   M  SGI      Y  
Sbjct: 680 FGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNT 739

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
            + S+A       A  +   M     +P   +   +V+ Y +    D+A+
Sbjct: 740 FIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAK 789


>gi|356517404|ref|XP_003527377.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Glycine max]
          Length = 696

 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 137/298 (45%)

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
            +AE + +++ ENG  P       L+  Y K G+L  A+     +   G +PD++ Y+ +
Sbjct: 309 HEAEALFEEIRENGSEPRTRAYNALLKGYVKTGSLKDAEFVVSEMEKAGVKPDEQTYSLL 368

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           I AY +AG+ +    ++  M  S +E +  +Y  +L S+   G+ + + Q+   M+    
Sbjct: 369 IDAYAHAGRWESARIVLKEMEASNVEPNSYVYSRILASYRDKGEWQKSFQVLKDMKSNGV 428

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
           QP      ++++ +G+    D A + F+ M+  G +PD     ++I  + K    + A  
Sbjct: 429 QPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIRPDTVTWNTLINCHCKSGRHNMAEE 488

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
           L  E+++ G+ P   TY ++++ +G  Q   +    L K+   G  P      +L D+Y 
Sbjct: 489 LFGEMQQRGYSPCITTYNIMINSMGEQQRWEQVSLFLSKMQSQGLLPNSITYTTLVDVYG 548

Query: 514 RAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAAS 571
           ++G    A++ L  L++   +     +  +IN     G  + A     LM  +G   S
Sbjct: 549 KSGRFSDAIECLEVLKSTGFKPTSTMYNALINAYAQRGLSELAVNAFRLMTTEGLTPS 606



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/278 (22%), Positives = 131/278 (47%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E   +   R Y+ L+  + K   L+DAE ++ +M + G+ PD  T ++L+  Y+ AG 
Sbjct: 318 IRENGSEPRTRAYNALLKGYVKTGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDAYAHAGR 377

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            + A+   + + +   +P+  VY+ ++ +Y + G+ +    ++  M ++G++     Y  
Sbjct: 378 WESARIVLKEMEASNVEPNSYVYSRILASYRDKGEWQKSFQVLKDMKSNGVQPDRHFYNV 437

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++ +F +   +  A      M  E  +P   +   L+  + ++G  + A   F  M + G
Sbjct: 438 MIDTFGKYNCLDHAMATFERMLSEGIRPDTVTWNTLINCHCKSGRHNMAEELFGEMQQRG 497

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
           + P       MI + G++   ++    L +++  G  P   TYT LVD  G+    ++A 
Sbjct: 498 YSPCITTYNIMINSMGEQQRWEQVSLFLSKMQSQGLLPNSITYTTLVDVYGKSGRFSDAI 557

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
           + L  +   G  P   +  +L + YA+ G+ + A+ A 
Sbjct: 558 ECLEVLKSTGFKPTSTMYNALINAYAQRGLSELAVNAF 595



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 76/353 (21%), Positives = 147/353 (41%), Gaps = 9/353 (2%)

Query: 241 FKVAELVLSE---ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTV 297
            K AE V+SE      + + + YS LIDA+A     E A  +LK+M  + + P+    + 
Sbjct: 343 LKDAEFVVSEMEKAGVKPDEQTYSLLIDAYAHAGRWESARIVLKEMEASNVEPNSYVYSR 402

Query: 298 LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG 357
           ++  Y   G   ++ +  + ++S+G QPD+  YN MI  +         M+  + M++ G
Sbjct: 403 ILASYRDKGEWQKSFQVLKDMKSNGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEG 462

Query: 358 IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
           I      +  L+    + G    A ++   M+   + P + +  +++ + G+    +Q  
Sbjct: 463 IRPDTVTWNTLINCHCKSGRHNMAEELFGEMQQRGYSPCITTYNIMINSMGEQQRWEQVS 522

Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
                M   G  P+     +++  YGK      A+  L  L+  GF+P    Y  L++  
Sbjct: 523 LFLSKMQSQGLLPNSITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNALINAY 582

Query: 478 GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE-QMG 536
            +  L   A      ++  G  P      SL + +   G +++  +A   L+  KE  + 
Sbjct: 583 AQRGLSELAVNAFRLMTTEGLTPSLLALNSLINAF---GEDRRDAEAFAVLQYMKENNIE 639

Query: 537 PD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQ 587
           PD   +  ++  L+     Q    V+  M   G     + +  L S+  + +Q
Sbjct: 640 PDVVTYTTLMKALIRVEKFQKVPAVYEEMVTSGCTPDRKARAMLRSALRYMKQ 692



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 68/325 (20%), Positives = 137/325 (42%), Gaps = 37/325 (11%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLV-------------------- 299
           Y+ LI A A+   +E A  ++ KM  +G  PD V  + ++                    
Sbjct: 188 YNALIGACARNGDVEKALNLMSKMRRDGYQPDFVNYSSIIQYLTRSNKIDSPILQKLYTE 247

Query: 300 ----------HM-------YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
                     H+       +SKAG+  RA       +S+G  P      ++I+A  N+G+
Sbjct: 248 IETDKIEIDGHLMNDIILGFSKAGDPTRAMRFLAMAQSNGLNPKPSTLVAVILALGNSGR 307

Query: 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402
                +L + +  +G E     Y ALL+ + + G ++ A  + + M     +P  ++ +L
Sbjct: 308 THEAEALFEEIRENGSEPRTRAYNALLKGYVKTGSLKDAEFVVSEMEKAGVKPDEQTYSL 367

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           L++AY  AG  + AR     M     +P+    + ++A+Y  K    K+  +L +++ +G
Sbjct: 368 LIDAYAHAGRWESARIVLKEMEASNVEPNSYVYSRILASYRDKGEWQKSFQVLKDMKSNG 427

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522
            +P    Y V++D  G+   ++ A     ++   G  P      +L + + ++G    A 
Sbjct: 428 VQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIRPDTVTWNTLINCHCKSGRHNMAE 487

Query: 523 QALGFLEAKKEQMGPDDFERIINGL 547
           +  G ++ +        +  +IN +
Sbjct: 488 ELFGEMQQRGYSPCITTYNIMINSM 512



 Score = 46.2 bits (108), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 97/226 (42%), Gaps = 16/226 (7%)

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM- 423
           Y AL+ + A+ GDV  A  + + MR + +QP   + + +++   ++   D       Y  
Sbjct: 188 YNALIGACARNGDVEKALNLMSKMRRDGYQPDFVNYSSIIQYLTRSNKIDSPILQKLYTE 247

Query: 424 -----IRL-GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
                I + GH  +D     +I  + K     +A+  L   + +G  P P+T   ++  L
Sbjct: 248 IETDKIEIDGHLMND-----IILGFSKAGDPTRAMRFLAMAQSNGLNPKPSTLVAVILAL 302

Query: 478 GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP 537
           G     +EAE L  +I E G  P  +   +L   Y + G  K A   +   E +K  + P
Sbjct: 303 GNSGRTHEAEALFEEIRENGSEPRTRAYNALLKGYVKTGSLKDAEFVVS--EMEKAGVKP 360

Query: 538 DD--FERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
           D+  +  +I+     G  + A+ V   MEA     +  +   +++S
Sbjct: 361 DEQTYSLLIDAYAHAGRWESARIVLKEMEASNVEPNSYVYSRILAS 406


>gi|115486223|ref|NP_001068255.1| Os11g0607100 [Oryza sativa Japonica Group]
 gi|77551887|gb|ABA94684.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113645477|dbj|BAF28618.1| Os11g0607100 [Oryza sativa Japonica Group]
          Length = 671

 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 151/331 (45%), Gaps = 1/331 (0%)

Query: 218 LQPSRIDWINLLDRLREQN-TQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L+P+      L+D L +   T+  F++   ++   S++ NV  Y+ +I  + +E  L  A
Sbjct: 282 LKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARA 341

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
           E +L +M E G+ P+  T T L+  + K G+ DRA E    ++  GF P+   YN++I  
Sbjct: 342 EMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDG 401

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           +   G+ +    ++ M  + G++  +  Y  L+    + G +  A  + + M      P 
Sbjct: 402 FCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENGCCPD 461

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           +E+ T L+  Y Q    ++++  FD  + +G  P  +   SMIA Y K      AL +  
Sbjct: 462 IEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTLALRVFE 521

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
            + ++G      TY  L+  L +   + EA+ L   + +    P    +V+L   Y R  
Sbjct: 522 RMVQNGCFADSITYGALISGLCKESRLEEAKALYEGMLDKRLVPCEVTRVTLTFEYCRRE 581

Query: 517 IEKKALQALGFLEAKKEQMGPDDFERIINGL 547
               A+  L  L+ +++    D   R ++ L
Sbjct: 582 KTSIAVSVLDRLDKRQQVHTVDVVVRKLSAL 612



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/324 (22%), Positives = 138/324 (42%), Gaps = 1/324 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV +Y+  ID   K   ++ A  +L++M   G+ P++ T T L+    K G  +RA   F
Sbjct: 250 NVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRLF 309

Query: 316 ESL-RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
             L +S  ++P+   Y  MI  Y   G+      L+  M+  G++ +   Y  L+    +
Sbjct: 310 LKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCK 369

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
            G    A ++ N M+ E F P + +   +++ + + G   +A          G K D   
Sbjct: 370 GGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKIT 429

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
              +I  + K+  +  AL+L   + ++G  P    YT L+    + + + E+++   K  
Sbjct: 430 YTILITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCL 489

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQ 554
            +G  P  +   S+   Y + G    AL+    +           +  +I+GL     L+
Sbjct: 490 MIGLLPTKQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGALISGLCKESRLE 549

Query: 555 DAQRVHGLMEAQGFAASERLKVAL 578
           +A+ ++  M  +     E  +V L
Sbjct: 550 EAKALYEGMLDKRLVPCEVTRVTL 573



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/218 (20%), Positives = 92/218 (42%), Gaps = 34/218 (15%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
            +D     ++M E G  P++V  T  +    K   + +A    E +   G +P+   + +
Sbjct: 232 FKDVSEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTT 291

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I      G  K+G +          ER+  ++L L++S                     
Sbjct: 292 LI-----DGLCKIGWT----------ERAFRLFLKLIKS-------------------SS 317

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
           ++P + + T+++  Y + G   +A      M+  G KP+     ++I  + K    D+A 
Sbjct: 318 YKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAF 377

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
            L+ +++++GF P   TY  ++D   +   I EA ++L
Sbjct: 378 ELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVL 415



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/315 (20%), Positives = 128/315 (40%), Gaps = 3/315 (0%)

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A ++   M   G+ PD  +   LV +  + G ++       ++  +GF  D      ++ 
Sbjct: 165 ARKVFDGMTRAGVCPDERSFRALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVR 224

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
           +    G+ K        M+ +G   +   Y A +    +   V+ A  +   M     +P
Sbjct: 225 SLCEKGRFKDVSEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKP 284

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIR-LGHKPDDRCTASMIAAYGKKNLLDKALNL 454
            + + T L++   + G  ++A   F  +I+   +KP+      MI  Y ++  L +A  L
Sbjct: 285 NVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEML 344

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
           L+ + + G +P   TYT L+    +    + A +L+ K+ + G  P      ++ D + +
Sbjct: 345 LVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCK 404

Query: 515 AGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERL 574
            G  ++A + L    ++  +     +  +I      G +  A  +   M   G       
Sbjct: 405 KGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENGCCPDIEA 464

Query: 575 KVALISSQTFNRQRQ 589
             +LIS  T+ +QRQ
Sbjct: 465 YTSLIS--TYCQQRQ 477



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/272 (21%), Positives = 106/272 (38%), Gaps = 1/272 (0%)

Query: 298 LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG 357
           +V  + +AG L  A +    +RSHG     +  N ++   +  G       + D M  +G
Sbjct: 117 MVAAFGEAGRLPEAADMVLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAG 176

Query: 358 IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
           +   E  + AL+    + G V     +   M    F     +CT++V +  + G      
Sbjct: 177 VCPDERSFRALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVS 236

Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
             F  M+  G  P+     + I    K+  + +A ++L E+   G +P   T+T L+D L
Sbjct: 237 EFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGL 296

Query: 478 GRLQLINEAEQLLGK-ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG 536
            ++     A +L  K I      P       +   Y R G   +A   L  +  +  +  
Sbjct: 297 CKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPN 356

Query: 537 PDDFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
            + +  +I G   GG    A  +   M+ +GF
Sbjct: 357 TNTYTTLIGGHCKGGSFDRAFELMNKMKQEGF 388



 Score = 42.7 bits (99), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 41/199 (20%), Positives = 81/199 (40%)

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
           + E+   ++ +F + G +  A  +   MR       +E+   ++    + G    AR  F
Sbjct: 110 AHEVMRGMVAAFGEAGRLPEAADMVLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVF 169

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
           D M R G  PD+R   +++    ++  +++   LL  + + GF    AT TV+V  L   
Sbjct: 170 DGMTRAGVCPDERSFRALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEK 229

Query: 481 QLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF 540
               +  +   ++ E G  P      +  D   +    K+A   L  +  +  +      
Sbjct: 230 GRFKDVSEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTH 289

Query: 541 ERIINGLLAGGFLQDAQRV 559
             +I+GL   G+ + A R+
Sbjct: 290 TTLIDGLCKIGWTERAFRL 308


>gi|125559009|gb|EAZ04545.1| hypothetical protein OsI_26694 [Oryza sativa Indica Group]
          Length = 784

 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 152/343 (44%), Gaps = 40/343 (11%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG------------- 306
           Y+ L+ A ++     DA  + ++M ++G+ P IVT  V++H+YSK               
Sbjct: 175 YTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVELVASM 234

Query: 307 -----NLDR------------------AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343
                  DR                  A + F+ +++ GF+PDK  +NS++  Y  A + 
Sbjct: 235 KEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRH 294

Query: 344 KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403
              + ++  M   G   S   Y +L+ S+ + G +  A  +   M ++  +P + + T L
Sbjct: 295 DEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGIKPDVVTYTTL 354

Query: 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGF 463
           +    +AG  D A   +D M+R G KP+     ++I  +G +    + + +  EL   GF
Sbjct: 355 ISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDELRSAGF 414

Query: 464 EPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
            P   T+  L+   G+  L +E   +  ++ + G  P     VSL   Y+R G+   A+Q
Sbjct: 415 VPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQ 474

Query: 524 ALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLME 564
              +    +  + PD   +  +++ L  GG  + A+++   ME
Sbjct: 475 I--YKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEME 515



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 144/325 (44%), Gaps = 5/325 (1%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLS--EESFQTNVRDYSKLIDAHAKENCLED 275
           +QP+ + + N++  +  +    + +V ELV S  E     +   Y+ LI    +    ++
Sbjct: 203 VQPAIVTY-NVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYTYNTLISCCRRRALYKE 261

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A ++  +M  +G  PD VT   L+ +Y KA   D A E  + +   G  P    YNS+I 
Sbjct: 262 AAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLIS 321

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
           +YV  G  +  ++L   M   GI+     Y  L+    + G +  A    + M     +P
Sbjct: 322 SYVKDGLLEQAVALKQEMEVKGIKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKP 381

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
            L +   L++ +G  G   +  + FD +   G  PD     +++A +G+  L  +   + 
Sbjct: 382 NLCTYNALIKMHGVRGKFPEMMAVFDELRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVF 441

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
            E++K G+ P   TY  L+    R  L + A Q+  ++ E G  P      ++    AR 
Sbjct: 442 KEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARG 501

Query: 516 GIEKKALQALGFLEAKKEQMGPDDF 540
           G  ++A +   F E ++    PD++
Sbjct: 502 GRWEQAEKL--FAEMEERDCKPDEY 524



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 140/321 (43%), Gaps = 15/321 (4%)

Query: 208 SPLLAEWKELLQ-----------PSRIDWINLLDRLREQNTQLYFKVAELV--LSEESFQ 254
           S +   WKE+++           P R  +  L+   R +   LY + A++   +    F+
Sbjct: 218 SKMAVPWKEVVELVASMKEHGVAPDRYTYNTLISCCRRR--ALYKEAAQVFDEMKASGFE 275

Query: 255 TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA 314
            +   ++ L+D + K    ++A  ++++M   G  P +VT   L+  Y K G L++A   
Sbjct: 276 PDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVAL 335

Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
            + +   G +PD   Y ++I     AG+    +   D M+ +G + +   Y AL++    
Sbjct: 336 KQEMEVKGIKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGV 395

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
            G       + + +R   F P + +   L+  +GQ G   +    F  M + G+ P+   
Sbjct: 396 RGKFPEMMAVFDELRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDT 455

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
             S+I++Y +  L D A+ +   + + G  P  +TY  ++  L R     +AE+L  ++ 
Sbjct: 456 YVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEME 515

Query: 495 ELGEAPPFKIQVSLCDMYARA 515
           E    P      SL   YA A
Sbjct: 516 ERDCKPDEYSYSSLLHAYANA 536



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 125/300 (41%), Gaps = 11/300 (3%)

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP-KLGMS 348
           PD    T LV  +S+AG    A   F  +   G QP    YN ++  Y     P K  + 
Sbjct: 170 PDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVE 229

Query: 349 LVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYG 408
           LV  M   G+      Y  L+    +    + A Q+ + M+   F+P   +   L++ YG
Sbjct: 230 LVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYG 289

Query: 409 QAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPA 468
           +A   D+A      M R+G  P      S+I++Y K  LL++A+ L  E+E  G +P   
Sbjct: 290 KARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGIKPDVV 349

Query: 469 TYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALG-F 527
           TYT L+  L R   I+ A     ++   G  P      +L  M+   G+  K  + +  F
Sbjct: 350 TYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMH---GVRGKFPEMMAVF 406

Query: 528 LEAKKEQMGPDDFERIINGLLA----GGFLQDAQRVHGLMEAQGFAASERLKVALISSQT 583
            E +     PD      N LLA     G   +   V   M+  G+       V+LISS +
Sbjct: 407 DELRSAGFVPDIV--TWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYS 464



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 134/317 (42%), Gaps = 4/317 (1%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           + N+  Y+ LI  H       +   +  ++   G VPDIVT   L+ ++ + G       
Sbjct: 380 KPNLCTYNALIKMHGVRGKFPEMMAVFDELRSAGFVPDIVTWNTLLAVFGQNGLDSEVSG 439

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            F+ ++  G+ P++  Y S+I +Y   G   L M +   M+ +GI      Y A+L + A
Sbjct: 440 VFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALA 499

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           + G    A ++   M   + +P   S + L+ AY  A   D+ ++  D +     +P + 
Sbjct: 500 RGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNW 559

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
              +++    K N L +A    LEL +            +V   G+ +++ + E++L  +
Sbjct: 560 LVKTLVLVNSKVNNLAEAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLM 619

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGG 551
            E           SL  MY+R G  +K    L   E K   + PD   +  +I      G
Sbjct: 620 KESAINLSAATYNSLMHMYSRLGDCEKCENIL--TEIKSSGVRPDRYSYNTVIYAYGRKG 677

Query: 552 FLQDAQRVHGLMEAQGF 568
            +++A R+   M+  G 
Sbjct: 678 QMKEASRLFSEMKCSGL 694



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 115/280 (41%), Gaps = 50/280 (17%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA---- 311
           +V  Y+ LI ++ K+  LE A  + ++M   GI PD+VT T L+    +AG +D A    
Sbjct: 312 SVVTYNSLISSYVKDGLLEQAVALKQEMEVKGIKPDVVTYTTLISGLDRAGKIDAAIVEY 371

Query: 312 -------------------------------KEAFESLRSHGFQPDKKVYNSMIMAYVNA 340
                                             F+ LRS GF PD   +N+++  +   
Sbjct: 372 DEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDELRSAGFVPDIVTWNTLLAVFGQN 431

Query: 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
           G       +   M  +G     + Y++L+ S+++CG    A QI   M      P + + 
Sbjct: 432 GLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTY 491

Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
             ++ A  + G  +QA   F  M     KPD+   +S++ AY     LDK   L  ++  
Sbjct: 492 NAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYS 551

Query: 461 DGFEPGPATYTVLVDWLGR-LQLINEAEQLLGKISELGEA 499
           +  EP         +WL + L L+N       K++ L EA
Sbjct: 552 ERIEPH--------NWLVKTLVLVN------SKVNNLAEA 577



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/292 (21%), Positives = 126/292 (43%), Gaps = 35/292 (11%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  LI ++++    + A +I K+M E GI PD+ T   ++   ++ G  ++A++ F  + 
Sbjct: 456 YVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEME 515

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE-------------------- 359
               +PD+  Y+S++ AY NA +     +L D + +  IE                    
Sbjct: 516 ERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLA 575

Query: 360 RSEEIYL---------------ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
            +E+ +L               A++  + +   VR   +I ++M+      +  +   L+
Sbjct: 576 EAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLM 635

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
             Y + GD ++  +    +   G +PD     ++I AYG+K  + +A  L  E++  G +
Sbjct: 636 HMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLK 695

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
           P   TY + V       +  EA +L+  +   G  P  +   S+ + Y R G
Sbjct: 696 PDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNG 747



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/340 (20%), Positives = 136/340 (40%), Gaps = 4/340 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L    F  ++  ++ L+    +     +   + K+M + G +P+  T   L+  YS+ G 
Sbjct: 409 LRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGL 468

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            D A + ++ +   G  PD   YN+++ A    G+ +    L   M     +  E  Y +
Sbjct: 469 FDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSS 528

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           LL ++A    +     +++ +  E  +P       LV    +  +  +A   F  + +  
Sbjct: 529 LLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKR 588

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
              D     +M++ YGK  ++ K   +L  +++       ATY  L+    RL    + E
Sbjct: 589 CSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCE 648

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIIN 545
            +L +I   G  P      ++   Y R G  K+A +   F E K   + PD   +   + 
Sbjct: 649 NILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRL--FSEMKCSGLKPDVVTYNIFVK 706

Query: 546 GLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFN 585
             ++    ++A  +   M  QG   +ER   +++     N
Sbjct: 707 SYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRN 746



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 102/238 (42%)

Query: 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318
            YS L+ A+A    L+  + +   +    I P       LV + SK  NL  A++AF  L
Sbjct: 525 SYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLEL 584

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
           R      D  V N+M+  Y      +    ++ +M  S I  S   Y +L+  +++ GD 
Sbjct: 585 RQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDC 644

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
                I   ++    +P   S   ++ AYG+ G   +A   F  M   G KPD       
Sbjct: 645 EKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIF 704

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
           + +Y   ++ ++A+ L+  +   G +P   TY  +V+   R   + +A+  +  + +L
Sbjct: 705 VKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKLTDAKIFVSNLPQL 762



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 79/174 (45%)

Query: 244 AELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS 303
           A L L ++    ++   + ++  + K   +   E+IL  M E+ I     T   L+HMYS
Sbjct: 580 AFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYS 639

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363
           + G+ ++ +     ++S G +PD+  YN++I AY   GQ K    L   M  SG++    
Sbjct: 640 RLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVV 699

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
            Y   ++S+        A ++   M  +  +P   +   +VE Y + G    A+
Sbjct: 700 TYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKLTDAK 753


>gi|449518511|ref|XP_004166285.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Cucumis sativus]
          Length = 868

 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 156/334 (46%), Gaps = 8/334 (2%)

Query: 226 INLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNE 285
           I+ L RL +   +L   V E  LSE  +   V  +S LI A+ K    ++A ++ + M  
Sbjct: 194 ISTLGRLGK--VELAKGVFETALSE-GYGNTVFAFSALISAYGKSGYFDEAIKVFESMKV 250

Query: 286 NGIVPDIVTSTVLVHMYSKAG-NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPK 344
           +G+ P++VT   ++    K G    R  E FE +  +G QPD+  YNS++      G  +
Sbjct: 251 SGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWE 310

Query: 345 LGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
              +L + MI  GI++    Y  LL +  + G +  A +I   M  ++  P + + + + 
Sbjct: 311 AARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMA 370

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
           + Y +AG  + A + ++ M  LG   D     ++++ Y K    + AL +  E+   G +
Sbjct: 371 DGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFEDALKVCKEMGSSGVK 430

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQA 524
               TY  L+D  G+    NE  ++  ++ +    P      +L D+Y++  + ++A++ 
Sbjct: 431 KDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEV 490

Query: 525 LGFLEAKKEQMGPDD--FERIINGLLAGGFLQDA 556
             F E K+  +  D   +  +IN L   G +  A
Sbjct: 491 --FREFKQAGLKADVVLYSELINALCKNGLVDSA 522



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 129/267 (48%), Gaps = 10/267 (3%)

Query: 218 LQPSRIDWINLL-----DRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC 272
           +QP RI + +LL       L E    L+ ++ +  + ++ F      Y+ L+DA  K   
Sbjct: 289 VQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFT-----YNTLLDAVCKGGQ 343

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           ++ A  I+ +M    I+P++VT + +   Y+KAG L+ A   +  ++  G   D+  YN+
Sbjct: 344 MDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNT 403

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           ++  Y   G+ +  + +   M +SG+++    Y ALL  + + G      ++   M+ + 
Sbjct: 404 LLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDR 463

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P L + + L++ Y +    ++A   F    + G K D    + +I A  K  L+D A+
Sbjct: 464 VFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVDSAV 523

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGR 479
            LL E+ K+G  P   TY  ++D  GR
Sbjct: 524 LLLDEMTKEGIRPNVVTYNSIIDAFGR 550



 Score = 40.8 bits (94), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/77 (23%), Positives = 39/77 (50%)

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           ++   G+ G  + A+  F+  +  G+       +++I+AYGK    D+A+ +   ++  G
Sbjct: 193 MISTLGRLGKVELAKGVFETALSEGYGNTVFAFSALISAYGKSGYFDEAIKVFESMKVSG 252

Query: 463 FEPGPATYTVLVDWLGR 479
            +P   TY  ++D  G+
Sbjct: 253 LKPNLVTYNAVIDACGK 269


>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
 gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
          Length = 609

 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 148/319 (46%), Gaps = 9/319 (2%)

Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311
           S + +V  Y+ +I        L  A  +L++M   G  PD  T T ++   + AG+LD  
Sbjct: 107 SCEPDVCSYNIVISGFCNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLD-- 164

Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
             A + LRS G  P+   Y ++I A+  A + +  M L++ M   G   +   Y  L+ +
Sbjct: 165 -GAMDHLRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDA 223

Query: 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
             +   V  A  +   M    F P + +   LV+ + + G+ D AR     M+  G +P+
Sbjct: 224 LCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPN 283

Query: 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
               +++I    K     +A  +L E++  G  P   TY+ L+  L +   I EAEQ+L 
Sbjct: 284 VVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLR 343

Query: 492 KISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFL-EAKKEQMGPD--DFERIINGLL 548
           +++  G  P   +  S+   + ++G   K L+A   L E +K++  PD   +  +I+GL 
Sbjct: 344 RMAGSGCTPDVVVYSSIIHAFCKSG---KLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLC 400

Query: 549 AGGFLQDAQRVHGLMEAQG 567
             G + +AQ +   M+  G
Sbjct: 401 KLGKIAEAQVILEQMQESG 419



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 158/350 (45%), Gaps = 13/350 (3%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E  F  NV  ++ L+D   K   ++DA ++L  M   G+ P++VT + L+    K+    
Sbjct: 242 EGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFL 301

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            AKE  E +++ G  PD   Y+++I     A + +    ++  M  SG      +Y +++
Sbjct: 302 EAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSII 361

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
            +F + G +  A +    MR +   P + +   +++   + G   +A+   + M   G  
Sbjct: 362 HAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDV 421

Query: 430 -PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQ 488
            PD    +++I    K ++L +A  LL  + K G  P   TYT ++D L +   + EAE 
Sbjct: 422 LPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEY 481

Query: 489 LLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD---FERIIN 545
           LL  +   G AP      +L     +A   +K  +A   +E  +    P +   +  ++N
Sbjct: 482 LLQGMKRAGCAPNVVTYTTLISGLCKA---RKVDEAERVMEEMRNAGCPPNLVTYNTMVN 538

Query: 546 GLLAGGFLQDAQRV-----HGLMEAQGFAASERLKV-ALISSQTFNRQRQ 589
           GL   G +++AQ++      G  E    AA+ R  V AL+SS       Q
Sbjct: 539 GLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQ 588



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 149/334 (44%), Gaps = 17/334 (5%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ LI A A+   LE+A ++L++M E G  P++VT  VLV    K   +  A++  
Sbjct: 178 NVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVV 237

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + +   GF P+   +NS++  +   G       L+ +M+  G+  +   Y AL+    + 
Sbjct: 238 KKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKS 297

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
                A ++   M+     P   + + L+    +A   ++A      M   G  PD    
Sbjct: 298 QKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVY 357

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
           +S+I A+ K   L +A   L E+ K    P   TY  ++D L +L  I EA+ +L ++ E
Sbjct: 358 SSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQE 417

Query: 496 LGEAPPFKIQVS-----LC--DMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIING 546
            G+  P  +  S     LC  DM   A   +K L  +      K    PD   +  II+G
Sbjct: 418 SGDVLPDVVTYSTVINGLCKSDMLVEA---QKLLDRMC-----KAGCNPDVVTYTTIIDG 469

Query: 547 LLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
           L   G L++A+ +   M+  G A +      LIS
Sbjct: 470 LCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLIS 503



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 116/258 (44%), Gaps = 3/258 (1%)

Query: 322 GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGA 381
           GF      +NS++   V   + +    L    + +  E     Y  ++  F   GD+  A
Sbjct: 72  GFSHTAFSWNSLLQVLVRCKKHREAGDLFRSELLASCEPDVCSYNIVISGFCNAGDLHAA 131

Query: 382 GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441
            ++   M+   F P   + T ++ A   AGD D A    D++  +G  P+     ++IAA
Sbjct: 132 LELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGA---MDHLRSMGCDPNVVTYTALIAA 188

Query: 442 YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
           + +   L++A+ LL E+ + G  P   TY VLVD L +L ++  A+ ++ K+ E G AP 
Sbjct: 189 FARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPN 248

Query: 502 FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHG 561
                SL D + + G    A + LG + AK  +     +  +I+GL       +A+ V  
Sbjct: 249 VMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLE 308

Query: 562 LMEAQGFAASERLKVALI 579
            M+ +G         ALI
Sbjct: 309 EMKTRGVTPDAFTYSALI 326



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 70/314 (22%), Positives = 130/314 (41%), Gaps = 44/314 (14%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELV--LSEESFQTNVRDYSKLIDAHAKENCLED 275
           ++P+ + +  L+D L +  +Q + +  E++  +       +   YS LI    K + +E+
Sbjct: 280 MRPNVVTYSALIDGLCK--SQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEE 337

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           AE++L++M  +G  PD+V  + ++H + K+G L  A++  + +R     PD   YN++I 
Sbjct: 338 AEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVID 397

Query: 336 AYVNAGQ------------------PKL------------------GMSLVDMMITSGIE 359
                G+                  P +                     L+D M  +G  
Sbjct: 398 GLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCN 457

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
                Y  ++    +CG +  A  +   M+     P + + T L+    +A   D+A   
Sbjct: 458 PDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERV 517

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG---FEPGPATYTVLVDW 476
            + M   G  P+     +M+        + +A  L+  + KDG     P  ATY  +V+ 
Sbjct: 518 MEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRM-KDGRAECSPDAATYRTIVNA 576

Query: 477 LGRLQLINEAEQLL 490
           L    L+ EAEQLL
Sbjct: 577 LMSSDLVQEAEQLL 590


>gi|449433429|ref|XP_004134500.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g16890, mitochondrial-like
           [Cucumis sativus]
          Length = 688

 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 109/232 (46%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L  +   +N+  Y+ +ID   K   ++ A  + + ++  GI P+IVT   L+  + + GN
Sbjct: 456 LINDGLISNIYSYNMVIDCLCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIGGFCRNGN 515

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D+A+E  E L    F+PD   +NS+I     A + +        M+   +  +   Y  
Sbjct: 516 MDKAQELLEMLLESRFRPDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWDVPPNVITYNI 575

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+ SF   GDV  +  +   M++   QP   S   L++ Y       +A   FD M+RLG
Sbjct: 576 LICSFCAIGDVSRSTHLLRQMKLHGIQPDTFSFNALIQGYTGKNRFQKAEKLFDSMLRLG 635

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
            +PD+    ++I +  K    DKA  + L ++++G  P   T ++  D L  
Sbjct: 636 IQPDNYTYGALIKSLCKSGRHDKAREIFLSMKENGCTPDSYTCSLFSDTLAH 687



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 77/164 (46%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           +L E  F+ ++  ++ LID   + +  E+A     +M E  + P+++T  +L+  +   G
Sbjct: 525 MLLESRFRPDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWDVPPNVITYNILICSFCAIG 584

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           ++ R+      ++ HG QPD   +N++I  Y    + +    L D M+  GI+     Y 
Sbjct: 585 DVSRSTHLLRQMKLHGIQPDTFSFNALIQGYTGKNRFQKAEKLFDSMLRLGIQPDNYTYG 644

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410
           AL++S  + G    A +I   M+     P   +C+L  +    +
Sbjct: 645 ALIKSLCKSGRHDKAREIFLSMKENGCTPDSYTCSLFSDTLAHS 688



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/317 (19%), Positives = 124/317 (39%), Gaps = 26/317 (8%)

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
            R Y+ ++DA  K N L+ A    ++M+ +  VPD  T  +L+H   + G +D A    +
Sbjct: 229 TRLYNAVMDALIKSNSLDLAYLKFQQMSSHNCVPDRFTYNILIHGVCRLGVVDEALRLMK 288

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
            +   G+ P+   Y  +I  + NA +      ++  M    +  +E    +L+    +C 
Sbjct: 289 QMEGLGYFPNVFTYTILIDGFFNAKRAGETFKVLQTMKERNVVPNEATMRSLVHGVFRCI 348

Query: 377 DV--------------RGAGQIT--NIMRIEE----------FQPTLESCTLLVEAYGQA 410
                           +G  Q+   NI+              F P+  +  + +    + 
Sbjct: 349 APDKAFELLLEFVERKQGITQLVCDNILYCLSNNSMASEAVMFXPSSSTFNITLACVLKK 408

Query: 411 GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATY 470
            D     + FD  ++ G KP      ++I A  K   ++     +  L  DG      +Y
Sbjct: 409 LDLKVTCTVFDNCVQSGVKPGFSTYLTLIEALYKAGKMEIGNRYMDRLINDGLISNIYSY 468

Query: 471 TVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEA 530
            +++D L + + ++ A ++   +   G +P      +L   + R G   KA + L  L  
Sbjct: 469 NMVIDCLCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIGGFCRNGNMDKAQELLEMLLE 528

Query: 531 KKEQMGPDDFERIINGL 547
            + +     F  +I+GL
Sbjct: 529 SRFRPDIFTFNSLIDGL 545



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 73/358 (20%), Positives = 131/358 (36%), Gaps = 38/358 (10%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ LID         +  ++L+ M E  +VP+  T   LVH   +    D+A E  
Sbjct: 298 NVFTYTILIDGFFNAKRAGETFKVLQTMKERNVVPNEATMRSLVHGVFRCIAPDKAFELL 357

Query: 316 ESL--RSHG------------------------FQPDKKVYNSMIMAYVNAGQPKLGMSL 349
                R  G                        F P    +N  +   +     K+  ++
Sbjct: 358 LEFVERKQGITQLVCDNILYCLSNNSMASEAVMFXPSSSTFNITLACVLKKLDLKVTCTV 417

Query: 350 VDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409
            D  + SG++     YL L+ +  + G +    +  + +  +     + S  ++++   +
Sbjct: 418 FDNCVQSGVKPGFSTYLTLIEALYKAGKMEIGNRYMDRLINDGLISNIYSYNMVIDCLCK 477

Query: 410 AGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPAT 469
               D+A   F  +   G  P+     ++I  + +   +DKA  LL  L +  F P   T
Sbjct: 478 GKSMDRASEMFRDLHNRGISPNIVTYNTLIGGFCRNGNMDKAQELLEMLLESRFRPDIFT 537

Query: 470 YTVLVDWLGRLQLINEAEQLLGKISELGE--APPFKI--QVSLCDMYARAGIEKKALQAL 525
           +  L+D L +    ++ E   G  +E+ E   PP  I   + +C   A   + +      
Sbjct: 538 FNSLIDGLCQ---AHKHENAFGCFTEMVEWDVPPNVITYNILICSFCAIGDVSRSTHL-- 592

Query: 526 GFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
              + K   + PD   F  +I G       Q A+++   M   G         ALI S
Sbjct: 593 -LRQMKLHGIQPDTFSFNALIQGYTGKNRFQKAEKLFDSMLRLGIQPDNYTYGALIKS 649



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 80/189 (42%), Gaps = 1/189 (0%)

Query: 345 LGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
           L + L+  +  SG++ +EE+   L  S+ + G      ++   + +    PT      ++
Sbjct: 177 LSVDLLQQIKESGLKVTEELLCILFGSWGRLGLANYCVEVFGQIGLLGLNPTTRLYNAVM 236

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
           +A  ++   D A   F  M      PD      +I    +  ++D+AL L+ ++E  G+ 
Sbjct: 237 DALIKSNSLDLAYLKFQQMSSHNCVPDRFTYNILIHGVCRLGVVDEALRLMKQMEGLGYF 296

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ- 523
           P   TYT+L+D     +   E  ++L  + E    P      SL     R     KA + 
Sbjct: 297 PNVFTYTILIDGFFNAKRAGETFKVLQTMKERNVVPNEATMRSLVHGVFRCIAPDKAFEL 356

Query: 524 ALGFLEAKK 532
            L F+E K+
Sbjct: 357 LLEFVERKQ 365


>gi|242094006|ref|XP_002437493.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
 gi|241915716|gb|EER88860.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
          Length = 1039

 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 122/255 (47%), Gaps = 3/255 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E+     V  Y+ LI    K++  ++A R+ + M +NG+ PD     VL     K+G 
Sbjct: 523 MQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSG- 581

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
             RA+EA+  L   G    K  Y S++  +  AG  +   +L++ M+  G +     Y  
Sbjct: 582 --RAEEAYSFLVKKGVVLTKVTYTSLVDGFSKAGNTEFAAALIEKMVNEGCKADSHTYSV 639

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           LL++  +   +  A  I + M +   +  + + T+++    + G  D A+S F+ MI  G
Sbjct: 640 LLQALCKQKKLNEALSILDQMTLRGVKGNIVAYTIIISEMIKEGKHDHAKSMFNEMISSG 699

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
           HKP        I++Y K   +++A +L+ E+E++G  P   TY V ++  G +  ++ A 
Sbjct: 700 HKPSAITYTVFISSYCKIGRIEEAGHLIGEMERNGVAPDVVTYNVFINGCGHMGYMDCAF 759

Query: 488 QLLGKISELGEAPPF 502
             L ++ +    P +
Sbjct: 760 STLKRMIDASCEPNY 774



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 136/308 (44%), Gaps = 1/308 (0%)

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           E   ++  ++ + G++PD VT   ++  Y K G+L  A   F  LR  G + D    N++
Sbjct: 165 EHMGKLYSQLVQEGLLPDTVTYNTMIMAYCKEGSLAIAHRYFRLLRESGMEMDTYTCNAL 224

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           ++ Y   G  +    L+ MM   G  R+E  Y  L++   +   VR A  +  +M  +  
Sbjct: 225 LLGYCRTGDLRKACWLLMMMPLMGCRRNEYSYTILIQGLCETRCVREALVLLLMMLQDGC 284

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
            P L + TLL+    + G    AR   D M R G  P      +MI  Y K   L  AL 
Sbjct: 285 SPNLHTYTLLIRGLCKEGRIHDARVLLDEMPRRGVVPSVWTYNAMIDGYCKSGRLKDALG 344

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
           +   +E +G  P   TY  L+  L   +  +EAE+LL      G +P      ++ + Y 
Sbjct: 345 IKTLMEGNGCNPDDWTYNSLIHGLCGGK-PDEAEELLNGAIARGFSPTVITFTNIINGYC 403

Query: 514 RAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASER 573
           +A     AL+    + + K ++    +  +I+ L+    L++A+     + A G + +  
Sbjct: 404 KAEKIDDALRVKSIMISSKCKLDLQAYGVLISVLIKKHRLKEAKDTLNEIFANGLSPNVV 463

Query: 574 LKVALISS 581
           +  ++I +
Sbjct: 464 IYTSIIDA 471



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 83/382 (21%), Positives = 155/382 (40%), Gaps = 41/382 (10%)

Query: 243 VAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMY 302
           V  L++ ++    N+  Y+ LI    KE  + DA  +L +M   G+VP + T   ++  Y
Sbjct: 274 VLLLMMLQDGCSPNLHTYTLLIRGLCKEGRIHDARVLLDEMPRRGVVPSVWTYNAMIDGY 333

Query: 303 SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE 362
            K+G L  A      +  +G  PD   YNS+I   +  G+P     L++  I  G   + 
Sbjct: 334 CKSGRLKDALGIKTLMEGNGCNPDDWTYNSLIHG-LCGGKPDEAEELLNGAIARGFSPTV 392

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIM-----------------------RIEEFQPTLES 399
             +  ++  + +   +  A ++ +IM                       R++E + TL  
Sbjct: 393 ITFTNIINGYCKAEKIDDALRVKSIMISSKCKLDLQAYGVLISVLIKKHRLKEAKDTLNE 452

Query: 400 C------------TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447
                        T +++AY + G    A   F      G +P+    +S+I    +   
Sbjct: 453 IFANGLSPNVVIYTSIIDAYCKVGKVGAALEVFKLTEHEGCRPNAWTYSSLIYGLIQDQK 512

Query: 448 LDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVS 507
           L KA+ L+ ++++DG  PG  TYT L+    +    + A +L   + + G  P  +    
Sbjct: 513 LHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNV 572

Query: 508 LCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
           L D   ++G   +A +A  FL  K   +    +  +++G    G  + A  +   M  +G
Sbjct: 573 LTDALCKSG---RAEEAYSFLVKKGVVLTKVTYTSLVDGFSKAGNTEFAAALIEKMVNEG 629

Query: 568 FAASERLKVALISSQTFNRQRQ 589
             A       L+  Q   +Q++
Sbjct: 630 CKADSHTYSVLL--QALCKQKK 649



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 73/374 (19%), Positives = 158/374 (42%), Gaps = 38/374 (10%)

Query: 218 LQPSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
             P+ I + N+++   + +      +V  +++S +  + +++ Y  LI    K++ L++A
Sbjct: 388 FSPTVITFTNIINGYCKAEKIDDALRVKSIMISSKC-KLDLQAYGVLISVLIKKHRLKEA 446

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
           +  L ++  NG+ P++V  T ++  Y K G +  A E F+     G +P+   Y+S+I  
Sbjct: 447 KDTLNEIFANGLSPNVVIYTSIIDAYCKVGKVGAALEVFKLTEHEGCRPNAWTYSSLIYG 506

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP- 395
            +   +    M+L+  M   GI      Y  L++   +  +   A ++  +M      P 
Sbjct: 507 LIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPD 566

Query: 396 -------------------------------TLESCTLLVEAYGQAGDPDQARSNFDYMI 424
                                          T  + T LV+ + +AG+ + A +  + M+
Sbjct: 567 EQAYNVLTDALCKSGRAEEAYSFLVKKGVVLTKVTYTSLVDGFSKAGNTEFAAALIEKMV 626

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
             G K D    + ++ A  K+  L++AL++L ++   G +     YT+++  + +    +
Sbjct: 627 NEGCKADSHTYSVLLQALCKQKKLNEALSILDQMTLRGVKGNIVAYTIIISEMIKEGKHD 686

Query: 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFER 542
            A+ +  ++   G  P           Y + G  ++A   +G  E ++  + PD   +  
Sbjct: 687 HAKSMFNEMISSGHKPSAITYTVFISSYCKIGRIEEAGHLIG--EMERNGVAPDVVTYNV 744

Query: 543 IINGLLAGGFLQDA 556
            ING    G++  A
Sbjct: 745 FINGCGHMGYMDCA 758



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 116/290 (40%), Gaps = 58/290 (20%)

Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
           +  L   G  PD   YN+MIMAY   G   +      ++  SG+E       ALL  + +
Sbjct: 171 YSQLVQEGLLPDTVTYNTMIMAYCKEGSLAIAHRYFRLLRESGMEMDTYTCNALLLGYCR 230

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
            GD+R A  +  +M        L  C                R+ + Y I +    + RC
Sbjct: 231 TGDLRKACWLLMMM-------PLMGCR---------------RNEYSYTILIQGLCETRC 268

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
                        + +AL LLL + +DG  P   TYT+L+  L +   I++A  LL ++ 
Sbjct: 269 -------------VREALVLLLMMLQDGCSPNLHTYTLLIRGLCKEGRIHDARVLLDEMP 315

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF-------------- 540
             G  P      ++ D Y ++G  K AL     +E       PDD+              
Sbjct: 316 RRGVVPSVWTYNAMIDGYCKSGRLKDALGIKTLMEGNG--CNPDDWTYNSLIHGLCGGKP 373

Query: 541 ---ERIINGLLAGGF----LQDAQRVHGLMEAQGFAASERLKVALISSQT 583
              E ++NG +A GF    +     ++G  +A+    + R+K  +ISS+ 
Sbjct: 374 DEAEELLNGAIARGFSPTVITFTNIINGYCKAEKIDDALRVKSIMISSKC 423



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 64/308 (20%), Positives = 119/308 (38%), Gaps = 16/308 (5%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  Y+ +I    KE   + A+ +  +M  +G  P  +T TV +  Y K G ++ A    
Sbjct: 668 NIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSAITYTVFISSYCKIGRIEEAGHLI 727

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF--- 372
             +  +G  PD   YN  I    + G      S +  MI +  E +   Y  LL+ F   
Sbjct: 728 GEMERNGVAPDVVTYNVFINGCGHMGYMDCAFSTLKRMIDASCEPNYWTYWLLLKHFLKM 787

Query: 373 ----AQCGDVRG---------AGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
               A   D  G           Q+   M      PT  + + ++  + +A   ++A   
Sbjct: 788 SLANAHYVDTSGMWNWIKLDTVWQLLERMVKHGLNPTAVTYSSIIAGFCKATRLEEACVL 847

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
            D+M+     P++     +I       L +KA + +  + + GF+P   +Y  L+  L  
Sbjct: 848 LDHMLGKDISPNEEIYTMLIKCCCDIKLFEKAASFVTNMIECGFQPHLESYHYLITGLCD 907

Query: 480 LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD 539
               ++A+ L   + E+           L D   +AG      Q L  +E +  ++  + 
Sbjct: 908 EGDYDKAKALFCDLLEMDYNHNEVAWKILNDGLLKAGHVDICSQLLSAMENRHCRIDSET 967

Query: 540 FERIINGL 547
           +  + N +
Sbjct: 968 YSMVTNNI 975


>gi|242081015|ref|XP_002445276.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
 gi|241941626|gb|EES14771.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
          Length = 768

 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 142/313 (45%), Gaps = 7/313 (2%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENG---IVPDIVTSTVLVHMYSKAGNLDRAK 312
           NV  Y+ L+     E   E+A  ++  M ++G     P++VT T ++    KA  +DRAK
Sbjct: 163 NVISYNILLKGLCNEKRAEEALELMHMMADDGDGSHTPNVVTYTTVIDGLCKAQMVDRAK 222

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
             F+ +   G +P+   Y  +I  Y++ G+ K  + ++  M T G++    IY  LL   
Sbjct: 223 GVFQHMIDKGVRPNNHTYTCLIHGYLSTGKWKEVVQMLQEMSTHGLQPDCVIYAVLLDYL 282

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + G    A  I + +  +  +P +    +L+  Y   G   +  S  D M+R G  PD 
Sbjct: 283 CKNGRCTEARNIFDSLIRKGIKPHVTIYGILLHGYATEGALSEMHSFLDLMVRNGVSPDH 342

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
                M  AY KK ++D+A+++  ++ +    PG   Y  L+D L +L  +++A     +
Sbjct: 343 HIFNIMFNAYAKKAMIDEAMHIFDKMRQQWLSPGVVNYGALIDALCKLGRVDDAVLKFNQ 402

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE--QMGPDDFERIINGLLAG 550
           +   G  P   +  SL  +Y    ++K       F E   +  ++    F  ++  L   
Sbjct: 403 MINEGVTPDIFVFSSL--VYGLCTVDKWEKAEKLFFEVLDQGIRLNAAFFNILMCNLCRE 460

Query: 551 GFLQDAQRVHGLM 563
           G + +AQR+  LM
Sbjct: 461 GRVMEAQRLIDLM 473



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 140/311 (45%), Gaps = 2/311 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++ + +A+AK+  +++A  I  KM +  + P +V    L+    K G +D A   F  + 
Sbjct: 345 FNIMFNAYAKKAMIDEAMHIFDKMRQQWLSPGVVNYGALIDALCKLGRVDDAVLKFNQMI 404

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G  PD  V++S++       + +    L   ++  GI  +   +  L+ +  + G V 
Sbjct: 405 NEGVTPDIFVFSSLVYGLCTVDKWEKAEKLFFEVLDQGIRLNAAFFNILMCNLCREGRVM 464

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++ ++M   + +P + S   LV+ +   G  D+A    D M+ +G KPD+    +++
Sbjct: 465 EAQRLIDLMLRVDVRPDVISYNTLVDGHCLTGRIDEAAKLLDVMVSIGLKPDEFTYNTLL 524

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL-LGKISELGE 498
             Y K   +D A +L  E+   G  PG  TY  ++  L ++    EA++L L  I+   +
Sbjct: 525 HGYCKARRIDDAYSLFREMLMKGLTPGVVTYNTILHGLFQIGRFCEAKELYLNMINNRRK 584

Query: 499 APPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQR 558
              +   + L +   R     +A +    L +K  Q+       +I  LL GG  +DA  
Sbjct: 585 CDIYTYTIIL-NGLCRNNFVDEAFKMFQSLCSKDLQLDIFTINIMIGALLKGGRKEDAMD 643

Query: 559 VHGLMEAQGFA 569
           +   + A G  
Sbjct: 644 LFATISAYGLV 654



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/353 (21%), Positives = 150/353 (42%), Gaps = 20/353 (5%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           ++  + N   Y+ LI  +      ++  ++L++M+ +G+ PD V   VL+    K G   
Sbjct: 230 DKGVRPNNHTYTCLIHGYLSTGKWKEVVQMLQEMSTHGLQPDCVIYAVLLDYLCKNGRCT 289

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A+  F+SL   G +P   +Y  ++  Y   G      S +D+M+ +G+     I+  + 
Sbjct: 290 EARNIFDSLIRKGIKPHVTIYGILLHGYATEGALSEMHSFLDLMVRNGVSPDHHIFNIMF 349

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
            ++A+   +  A  I + MR +   P + +   L++A  + G  D A   F+ MI  G  
Sbjct: 350 NAYAKKAMIDEAMHIFDKMRQQWLSPGVVNYGALIDALCKLGRVDDAVLKFNQMINEGVT 409

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD    +S++      +  +KA  L  E+   G     A + +L+  L R   + EA++L
Sbjct: 410 PDIFVFSSLVYGLCTVDKWEKAEKLFFEVLDQGIRLNAAFFNILMCNLCREGRVMEAQRL 469

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL--------------------GFLE 529
           +  +  +   P      +L D +   G   +A + L                    G+ +
Sbjct: 470 IDLMLRVDVRPDVISYNTLVDGHCLTGRIDEAAKLLDVMVSIGLKPDEFTYNTLLHGYCK 529

Query: 530 AKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQ 582
           A++       F  ++   L  G +     +HGL +   F  ++ L + +I+++
Sbjct: 530 ARRIDDAYSLFREMLMKGLTPGVVTYNTILHGLFQIGRFCEAKELYLNMINNR 582



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 106/266 (39%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ L+D H     +++A ++L  M   G+ PD  T   L+H Y KA  +D A   F
Sbjct: 481 DVISYNTLVDGHCLTGRIDEAAKLLDVMVSIGLKPDEFTYNTLLHGYCKARRIDDAYSLF 540

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G  P    YN+++      G+      L   MI +  +     Y  +L    + 
Sbjct: 541 REMLMKGLTPGVVTYNTILHGLFQIGRFCEAKELYLNMINNRRKCDIYTYTIILNGLCRN 600

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
             V  A ++   +  ++ Q  + +  +++ A  + G  + A   F  +   G  PD    
Sbjct: 601 NFVDEAFKMFQSLCSKDLQLDIFTINIMIGALLKGGRKEDAMDLFATISAYGLVPDVETY 660

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +     K+  L++   L   +E++G  P       LV WL     I  A   L K+ E
Sbjct: 661 RLIAENLIKEGSLEELDELFSAMEENGTAPNSRMLNALVRWLLHRGDIGRAGVYLSKLDE 720

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKA 521
              +        L  +Y+RA  ++ A
Sbjct: 721 KNFSLEASTTSMLISIYSRAEYQQLA 746



 Score = 42.7 bits (99), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 31/165 (18%), Positives = 74/165 (44%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           + ++  Y+ +++   + N +++A ++ + +    +  DI T  +++    K G  + A +
Sbjct: 584 KCDIYTYTIILNGLCRNNFVDEAFKMFQSLCSKDLQLDIFTINIMIGALLKGGRKEDAMD 643

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            F ++ ++G  PD + Y  +    +  G  +    L   M  +G   +  +  AL+R   
Sbjct: 644 LFATISAYGLVPDVETYRLIAENLIKEGSLEELDELFSAMEENGTAPNSRMLNALVRWLL 703

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418
             GD+  AG   + +  + F     + ++L+  Y +A     A+S
Sbjct: 704 HRGDIGRAGVYLSKLDEKNFSLEASTTSMLISIYSRAEYQQLAKS 748



 Score = 38.9 bits (89), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 21/87 (24%), Positives = 44/87 (50%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L  +  Q ++   + +I A  K    EDA  +   ++  G+VPD+ T  ++     K G+
Sbjct: 613 LCSKDLQLDIFTINIMIGALLKGGRKEDAMDLFATISAYGLVPDVETYRLIAENLIKEGS 672

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMI 334
           L+   E F ++  +G  P+ ++ N+++
Sbjct: 673 LEELDELFSAMEENGTAPNSRMLNALV 699


>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
          Length = 814

 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 115/257 (44%), Gaps = 35/257 (13%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ +++ +A + CL D   +   M  +GI PDI T  VL+  Y+  G LD+A   F
Sbjct: 358 NVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIF 417

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +R HG +PD   Y ++I A    G+    M   + MI  G+   +  Y  L++ F   
Sbjct: 418 NEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTH 477

Query: 376 GDVRGAGQ-ITNIM----------------------RIEEFQ------------PTLESC 400
           G +  A + I+ IM                      R+ + Q            PT    
Sbjct: 478 GSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVY 537

Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
           ++L++ Y   G  ++A   FD M+  G +P+D    +++  Y K   +D+ L+L  E+ +
Sbjct: 538 SMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQ 597

Query: 461 DGFEPGPATYTVLVDWL 477
            G +P    Y +++D L
Sbjct: 598 KGIKPSTILYNIIIDGL 614



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 137/303 (45%), Gaps = 5/303 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI  ++     ++A R+ K+M  + I+PD+VT ++L+    K G +  A++ F+++ 
Sbjct: 292 YNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMA 351

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P+   Y  M+  Y   G       L D+M+  GI      +  L++++A CG + 
Sbjct: 352 MKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLD 411

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  I N MR    +P + +   ++ A  + G  D A   F+ MI  G  PD      +I
Sbjct: 412 KAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLI 471

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             +     L KA  L+ E+  +G       ++ +++ L +L  + +A+ +      +G  
Sbjct: 472 QGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLH 531

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P   +   L D Y   G  +KAL+   F       + P+D   ++ G L  G+ +  +  
Sbjct: 532 PTAVVYSMLMDGYCLVGKMEKALRV--FDAMVSAGIEPND---VVYGTLVNGYCKIGRID 586

Query: 560 HGL 562
            GL
Sbjct: 587 EGL 589



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 141/350 (40%), Gaps = 37/350 (10%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIV--PDIVTSTVLVHMYSKAGNLDRAKE 313
           +V  YS L+ +   +     A+ +L+ M E G V  PD+V  + ++  + K G++++A +
Sbjct: 181 DVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYSTVIDGFFKEGDVNKACD 240

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            F+ +   G  PD   Y+S++ A   A       + +  M+  G+  +   Y  L+  ++
Sbjct: 241 LFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYS 300

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD-- 431
             G  + A ++   MR     P + + ++L+ +  + G   +AR  FD M   G  P+  
Sbjct: 301 STGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVF 360

Query: 432 -----------DRCTASM----------------------IAAYGKKNLLDKALNLLLEL 458
                        C   M                      I AY    +LDKA+ +  E+
Sbjct: 361 SYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEM 420

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
              G +P   TY  ++  L R+  +++A +   ++ + G AP       L   +   G  
Sbjct: 421 RDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSL 480

Query: 519 KKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
            KA + +  +      +    F  IIN L   G + DAQ +  L    G 
Sbjct: 481 LKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGL 530



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 106/278 (38%), Gaps = 36/278 (12%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS L+D +     +E A R+   M   GI P+ V    LV+ Y K G +D     F  + 
Sbjct: 537 YSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREML 596

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF--AQCGD 377
             G +P   +YN +I     AG+          M  SGI  ++  Y  +LR     +C D
Sbjct: 597 QKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYNIVLRGLFKNRCFD 656

Query: 378 --------VRGAGQITNIM-------------RIEE------------FQPTLESCTLLV 404
                   +R      NI+             R+EE              P + + ++++
Sbjct: 657 EAIFLFKELRAMNVKINIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMI 716

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
               + G  ++A   F  M   G +PD R    ++    KKN + +A   L ++++  F 
Sbjct: 717 TNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFS 776

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLL-GKISELGEAPP 501
               T  +LVD         E  + L  K   L EA P
Sbjct: 777 LEHLTTMLLVDLFSSKGTCREHIRFLPAKYHFLAEASP 814



 Score = 47.0 bits (110), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 91/207 (43%), Gaps = 8/207 (3%)

Query: 211 LAEWKELLQ----PSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDA 266
           L+ ++E+LQ    PS I +  ++D L E    +  KV    ++E     N   Y+ ++  
Sbjct: 589 LSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYNIVLRG 648

Query: 267 HAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPD 326
             K  C ++A  + K++    +  +I+T   ++    +   ++ AK+ F S+   G  P 
Sbjct: 649 LFKNRCFDEAIFLFKELRAMNVKINIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPC 708

Query: 327 KKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITN 386
              Y+ MI   +  G  +    +   M  +G E    +   ++R   +  ++  AG   +
Sbjct: 709 VVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLS 768

Query: 387 IMRIEEFQPTLESCT--LLVEAYGQAG 411
             +I+E   +LE  T  LLV+ +   G
Sbjct: 769 --KIDERNFSLEHLTTMLLVDLFSSKG 793


>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
          Length = 586

 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 147/321 (45%), Gaps = 6/321 (1%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           E FQ NV  Y  LI+   K      A R+L+ M +    PD+V  T ++    K   + +
Sbjct: 167 EGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQ 226

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A   F  +   G  P    YNS+I A  N  + K   +L++ M+ S I  +  I+  ++ 
Sbjct: 227 AFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVD 286

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
           +  + G V  A  + ++M     +P + +   L++ +    + D+A   FD M+  G  P
Sbjct: 287 ALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAP 346

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           D    +++I  Y K   ++KA+ L  E+ +    P   TY+ L+  L  +  + +A  L 
Sbjct: 347 DVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALF 406

Query: 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEA-KKEQMGPD--DFERIINGL 547
            ++   G+ P F   VS C +       ++  +A+  L+A +   M PD   +  +I+G+
Sbjct: 407 HEMVTRGQIPDF---VSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGM 463

Query: 548 LAGGFLQDAQRVHGLMEAQGF 568
              G L+ A+ +   + ++G 
Sbjct: 464 CRAGELEAARDLFSNLSSKGL 484



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/370 (21%), Positives = 156/370 (42%), Gaps = 18/370 (4%)

Query: 219 QPSRIDWINLLDRLRE--QNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE-- 274
           QP  + + +++D L +  Q TQ +   +E++   +    ++  Y+ LI  HA  N  E  
Sbjct: 205 QPDVVVYTSIIDSLCKDRQVTQAFNLFSEMI--HQGISPSIFTYNSLI--HALCNLCEWK 260

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
               +L +M  + I+P++V  + +V    K G +  A +  + +   G +P+   YN+++
Sbjct: 261 HVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALM 320

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
             +    +    + + D M+  G       Y  L+  + +   +  A  +   M  +E  
Sbjct: 321 DGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELI 380

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P   + + L+      G    A + F  M+  G  PD      ++    K   LD+A+ L
Sbjct: 381 PNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIAL 440

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
           L  +E    +P    YT+++D + R   +  A  L   +S  G  P       + +   +
Sbjct: 441 LKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQ 500

Query: 515 AGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGL-----MEAQGFA 569
            G+  +A +  G  E K++   P+        L+  GFL++ + + G+     M A+GF+
Sbjct: 501 QGLLAEASKLFG--EMKRKGYSPNGCTY---NLITRGFLRNNETLRGIQLLQEMLARGFS 555

Query: 570 ASERLKVALI 579
           A       L+
Sbjct: 556 ADVSTSTVLV 565



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 74/334 (22%), Positives = 147/334 (44%), Gaps = 18/334 (5%)

Query: 211 LAEWKEL-----------LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVR 258
           L EWK +           + P+ + +  ++D L +E        V ++++ +   + NV 
Sbjct: 256 LCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMI-KRGVEPNVV 314

Query: 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318
            Y+ L+D H   + +++A ++   M   G  PD+V+ + L++ Y K   +++A   FE +
Sbjct: 315 TYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEM 374

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
                 P+   Y++++    + G+ +  ++L   M+T G       Y  LL     C + 
Sbjct: 375 CRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYL--CKNR 432

Query: 379 RGAGQITNIMRIE--EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
           R    I  +  IE     P ++  T++++   +AG+ + AR  F  +   G  P+     
Sbjct: 433 RLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYT 492

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
            MI    ++ LL +A  L  E+++ G+ P   TY ++     R        QLL ++   
Sbjct: 493 IMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLAR 552

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALG-FLE 529
           G +        L +M +  G+++   Q L  FL+
Sbjct: 553 GFSADVSTSTVLVEMLSDDGLDQSVKQILSEFLQ 586



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 78/404 (19%), Positives = 146/404 (36%), Gaps = 42/404 (10%)

Query: 175 RGEMILPEEPKPITGKCKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLRE 234
           R  M       P +G C      +LSL     P   L+          +++  L D L  
Sbjct: 7   RATMATIAFSSPGSGTC------MLSL-----PPHFLSSSHNTFHSKSLNFNTLDDALSS 55

Query: 235 QNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVT 294
            N  L+               ++ D++KL+ +  K         +  +M+  GI P+I T
Sbjct: 56  FNRMLHMHPPP----------SIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYT 105

Query: 295 STVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMI 354
             +L++ +     L  A      +   G QP+   +N++I      G+    + L D MI
Sbjct: 106 LNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMI 165

Query: 355 TSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPD 414
             G + +   Y  L+    + G    A ++   M     QP +   T ++++  +     
Sbjct: 166 GEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVT 225

Query: 415 QARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
           QA + F  MI  G  P      S+I A            LL E+      P    ++ +V
Sbjct: 226 QAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVV 285

Query: 475 DWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ 534
           D L +   + EA  ++                   DM  + G+E   +     ++    +
Sbjct: 286 DALCKEGKVMEAHDVV-------------------DMMIKRGVEPNVVTYNALMDGHCLR 326

Query: 535 MGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVAL 578
              D+  ++ + ++  GF  D      L+   G+   +R++ A+
Sbjct: 327 SEMDEAVKVFDTMVCKGFAPDVVSYSTLI--NGYCKIQRIEKAM 368


>gi|242067353|ref|XP_002448953.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
 gi|241934796|gb|EES07941.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
          Length = 734

 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 85/373 (22%), Positives = 157/373 (42%), Gaps = 20/373 (5%)

Query: 211 LAEWKELLQ-----------PSRIDW---INLLDRLREQNTQLYFKVAELVLSEESFQTN 256
           + +WKE++Q           P    +   +N L  L E ++ L   V      E     +
Sbjct: 255 IGKWKEVVQMLEKMSARGLKPDCYTYGSLLNYLCALSEMHSFLDLMV------ENGLSPD 308

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
              ++    A+AK   ++ A  I  KM ++G+ P++V    L+    K G +D A+  F 
Sbjct: 309 HHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFN 368

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
            + + G  P+  V+NS++       + +    LV  M+  GI  +   +  L+ +    G
Sbjct: 369 QMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVG 428

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
            V    ++ ++M     +P   S T L+  Y  AG  D+A   FD M+ +G  P +    
Sbjct: 429 RVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLAGRTDEAEKVFDGMVSIGLSPTEVTYN 488

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
           +++  Y   + +D A  L  E+ + G  PG  TY  ++  L + +  +EA++L   +   
Sbjct: 489 TLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINS 548

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDA 556
           G          + +   ++    +A +    L +K  Q+    F  +I  LL GG  +DA
Sbjct: 549 GTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDA 608

Query: 557 QRVHGLMEAQGFA 569
             +   + A G  
Sbjct: 609 MDLFAAIPANGLV 621



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/348 (22%), Positives = 144/348 (41%), Gaps = 23/348 (6%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ +ID   K    + AE + ++M +NG+ P+  T   L+H Y   G      +  
Sbjct: 206 NVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQML 265

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E + + G +PD   Y S+ + Y+ A       S +D+M+ +G+     I+     ++A+C
Sbjct: 266 EKMSARGLKPDCYTYGSL-LNYLCALSEM--HSFLDLMVENGLSPDHHIFNIFFSAYAKC 322

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A  I N MR     P + +   L++A  + G  D A   F+ MI  G  P+    
Sbjct: 323 GMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVF 382

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            S++      +  ++A  L+ E+   G  P    +  L+  L  +  + E  +L+  +  
Sbjct: 383 NSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEH 442

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQAL--------------------GFLEAKKEQM 535
           +G  P       L   Y  AG   +A +                      G+  A +   
Sbjct: 443 VGVRPDAFSYTPLISGYCLAGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDD 502

Query: 536 GPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQT 583
               F  ++   +  G +     +HGL + + F+ ++ L + +I+S T
Sbjct: 503 AYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGT 550



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/256 (20%), Positives = 114/256 (44%), Gaps = 8/256 (3%)

Query: 166 TEVAEKIHERGEMILPEEPKPITGKCKLITDKILSLEKEEDPSPLLAEW-KELLQPSRID 224
           T+ AEK+ + G + +   P  +T    L      S  + +D   L  E  ++ + P  + 
Sbjct: 465 TDEAEKVFD-GMVSIGLSPTEVTYNTLL--HGYCSASRIDDAYCLFREMLRKGVTPGVVT 521

Query: 225 WINLLDRLREQNTQLYFKVAELVLS--EESFQTNVRDYSKLIDAHAKENCLEDAERILKK 282
           +  +L  L +  T+ + +  EL L+      + ++  Y+ +++   K NC+++A ++ + 
Sbjct: 522 YNTILHGLFQ--TKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQS 579

Query: 283 MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
           +   G+  +I+T T+++    K G  + A + F ++ ++G  P+   Y  +    +  G 
Sbjct: 580 LCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGS 639

Query: 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402
            +   SL   M  +G   + ++  AL+R     GD+  AG   + +    F     + +L
Sbjct: 640 LEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVEASTTSL 699

Query: 403 LVEAYGQAGDPDQARS 418
           L+  +        A+S
Sbjct: 700 LISIFTSDEYQHHAKS 715



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 41/240 (17%), Positives = 101/240 (42%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+  +   + ++DA  + ++M   G+ P +VT   ++H   +      AKE + ++ 
Sbjct: 487 YNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMI 546

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G + D   YN ++     +        +   + + G++ +   +  ++ +  + G   
Sbjct: 547 NSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKE 606

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  +   +      P + +  L+ E   + G  ++  S F  M + G  P+ +   +++
Sbjct: 607 DAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALV 666

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
                +  + +A   L +L++  F    +T ++L+      +  + A+ L  K   L EA
Sbjct: 667 RRLLHRGDISRAGAYLSKLDERNFSVEASTTSLLISIFTSDEYQHHAKSLPEKYHFLNEA 726


>gi|449435168|ref|XP_004135367.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like [Cucumis sativus]
          Length = 962

 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 112/222 (50%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
            V  Y+ LI    ++  +E AE+IL +M   G+ P+  T T ++H Y+  G+  +A   F
Sbjct: 625 TVHTYNALILGLVEKRKMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFTYF 684

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             LR  G Q D   Y +++ A   +G+ +  +++   M    I R+  IY  L+  +A+ 
Sbjct: 685 TKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIYNILIDGWARR 744

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           GD+  A  +   M+ E  QP + + T  + A  +AGD  +A    + M  +G KP+ +  
Sbjct: 745 GDIWEAADLMQQMKREGVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTY 804

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
            ++I  + + +L +KAL+   E++  G +P  A Y  L+  L
Sbjct: 805 TTLINGWARASLPEKALSCFEEMKLSGLKPDRAVYHCLMTSL 846



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 137/330 (41%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E+    N   Y  +I A+ +   ++ AE ++++M E GI   I     ++  Y+  G+ D
Sbjct: 409 EKHSSLNAIIYGNIIYAYCQRCNMDKAEALVREMEEEGIDAPIDIYHTMMDGYTMVGDED 468

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
           +    FE  +  G  P    Y  +I  Y   G+    + +   M  +GI+ + + Y  L+
Sbjct: 469 KCLLVFERFKECGLNPSVITYGCLINLYAKLGKVSKALEVSKEMEHAGIKHNMKTYSMLI 528

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
             F +  D   A  I   +  +  +P +     ++ A+   G  D+A      M +  HK
Sbjct: 529 NGFLKLKDWANAFAIFEDLIKDGIKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRHK 588

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           P  R    +I  + +K  + KAL++   +   G  P   TY  L+  L   + + +AEQ+
Sbjct: 589 PTTRTFMPIIHGFARKGEMKKALDVFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQI 648

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLA 549
           L +++  G +P      ++   YA  G   KA      L  +  Q+    +E ++     
Sbjct: 649 LDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFTYFTKLRDEGLQLDVYTYEALLKACCK 708

Query: 550 GGFLQDAQRVHGLMEAQGFAASERLKVALI 579
            G +Q A  V   M AQ    +  +   LI
Sbjct: 709 SGRMQSALAVTKEMSAQNIPRNTFIYNILI 738



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 90/400 (22%), Positives = 170/400 (42%), Gaps = 48/400 (12%)

Query: 204 EEDPSPLLAE-WKEL-LQPSRIDW---INLLDRLREQNTQLYFKVAELVLSEESFQTNVR 258
           +ED   L+ E +KE  L PS I +   INL  +L + +  L  +V++  +     + N++
Sbjct: 466 DEDKCLLVFERFKECGLNPSVITYGCLINLYAKLGKVSKAL--EVSK-EMEHAGIKHNMK 522

Query: 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318
            YS LI+   K     +A  I + + ++GI PD+V    ++  +   G +DRA    + +
Sbjct: 523 TYSMLINGFLKLKDWANAFAIFEDLIKDGIKPDVVLYNNIITAFCGMGKMDRAVCTVKEM 582

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
           +    +P  + +  +I  +   G+ K  + + DMM  SG   +   Y AL+    +   +
Sbjct: 583 QKQRHKPTTRTFMPIIHGFARKGEMKKALDVFDMMRMSGCIPTVHTYNALILGLVEKRKM 642

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD------- 431
             A QI + M +    P   + T ++  Y   GD  +A + F  +   G + D       
Sbjct: 643 EKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFTYFTKLRDEGLQLDVYTYEAL 702

Query: 432 -DRCTAS---------------------------MIAAYGKKNLLDKALNLLLELEKDGF 463
              C  S                           +I  + ++  + +A +L+ +++++G 
Sbjct: 703 LKACCKSGRMQSALAVTKEMSAQNIPRNTFIYNILIDGWARRGDIWEAADLMQQMKREGV 762

Query: 464 EPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
           +P   TYT  ++   +   +  A + + ++  +G  P  K   +L + +ARA + +KAL 
Sbjct: 763 QPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLINGWARASLPEKALS 822

Query: 524 ALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLM 563
              F E K   + PD   R +   L    L  A   HG +
Sbjct: 823 C--FEEMKLSGLKPD---RAVYHCLMTSLLSRATVAHGCI 857



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 68/318 (21%), Positives = 126/318 (39%), Gaps = 35/318 (11%)

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           ++V+ Y++ G++ RA+E FE +R+ G +P   VY ++I AY      +  +S V  M   
Sbjct: 316 LMVNYYTRRGDMHRARETFEKMRARGIEPSSHVYTNLIHAYAVGRDMEEALSCVRKMKEE 375

Query: 357 GIERSEEIYLALLRSFAQCGDVRGA-----------GQITNIMRIEEFQPTLESCTL--- 402
           GIE S   Y  L+  FA+ G+   A             +  I+         + C +   
Sbjct: 376 GIEMSLVTYSILVSGFAKTGNAESADHWFQEAKEKHSSLNAIIYGNIIYAYCQRCNMDKA 435

Query: 403 ---------------------LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441
                                +++ Y   GD D+    F+     G  P       +I  
Sbjct: 436 EALVREMEEEGIDAPIDIYHTMMDGYTMVGDEDKCLLVFERFKECGLNPSVITYGCLINL 495

Query: 442 YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
           Y K   + KAL +  E+E  G +    TY++L++   +L+    A  +   + + G  P 
Sbjct: 496 YAKLGKVSKALEVSKEMEHAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDLIKDGIKPD 555

Query: 502 FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHG 561
             +  ++   +   G   +A+  +  ++ ++ +     F  II+G    G ++ A  V  
Sbjct: 556 VVLYNNIITAFCGMGKMDRAVCTVKEMQKQRHKPTTRTFMPIIHGFARKGEMKKALDVFD 615

Query: 562 LMEAQGFAASERLKVALI 579
           +M   G   +     ALI
Sbjct: 616 MMRMSGCIPTVHTYNALI 633



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 62/334 (18%), Positives = 137/334 (41%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + EE     +  Y  ++D +      +    + ++  E G+ P ++T   L+++Y+K G 
Sbjct: 442 MEEEGIDAPIDIYHTMMDGYTMVGDEDKCLLVFERFKECGLNPSVITYGCLINLYAKLGK 501

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           + +A E  + +   G + + K Y+ +I  ++         ++ + +I  GI+    +Y  
Sbjct: 502 VSKALEVSKEMEHAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDLIKDGIKPDVVLYNN 561

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++ +F   G +  A      M+ +  +PT  +   ++  + + G+  +A   FD M   G
Sbjct: 562 IITAFCGMGKMDRAVCTVKEMQKQRHKPTTRTFMPIIHGFARKGEMKKALDVFDMMRMSG 621

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P      ++I    +K  ++KA  +L E+   G  P   TYT ++     L    +A 
Sbjct: 622 CIPTVHTYNALILGLVEKRKMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAF 681

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
               K+ + G         +L     ++G  + AL     + A+        +  +I+G 
Sbjct: 682 TYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIYNILIDGW 741

Query: 548 LAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
              G + +A  +   M+ +G         + I++
Sbjct: 742 ARRGDIWEAADLMQQMKREGVQPDIHTYTSFINA 775



 Score = 45.4 bits (106), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 90/224 (40%), Gaps = 39/224 (17%)

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
           +P+ +   L+V  Y + GD  +AR  F+ M   G +P      ++I AY     +++AL+
Sbjct: 308 KPSRKEYGLMVNYYTRRGDMHRARETFEKMRARGIEPSSHVYTNLIHAYAVGRDMEEALS 367

Query: 454 LLLELEKDGFEPGPATYTVLVD-------------WL-------GRLQLI---------- 483
            + +++++G E    TY++LV              W          L  I          
Sbjct: 368 CVRKMKEEGIEMSLVTYSILVSGFAKTGNAESADHWFQEAKEKHSSLNAIIYGNIIYAYC 427

Query: 484 -----NEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
                ++AE L+ ++ E G   P  I  ++ D Y   G E K L  L F   K+  + P 
Sbjct: 428 QRCNMDKAEALVREMEEEGIDAPIDIYHTMMDGYTMVGDEDKCL--LVFERFKECGLNPS 485

Query: 539 --DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
              +  +IN     G +  A  V   ME  G   + +    LI+
Sbjct: 486 VITYGCLINLYAKLGKVSKALEVSKEMEHAGIKHNMKTYSMLIN 529


>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
           restorer; AltName: Full=Protein PPR; AltName:
           Full=Restorer for CMS; Flags: Precursor
 gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
 gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
 gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
 gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
 gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
          Length = 791

 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 124/266 (46%), Gaps = 6/266 (2%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ +I+   KE   + A     +M + GI+PD+VT   ++    KA  +D+A E  
Sbjct: 195 DVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVL 254

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
            ++  +G  PD   YNS++  Y ++GQPK  +  +  M + G+E     Y  L+    + 
Sbjct: 255 NTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKN 314

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G    A +I + M     +P + +   L++ Y   G   +     D M+R G  PD    
Sbjct: 315 GRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVF 374

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
           + +I AY K+  +D+A+ +  ++ + G  P   TY  ++  L +   + +A     ++ +
Sbjct: 375 SILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMID 434

Query: 496 LGEAPPFKIQVSL------CDMYARA 515
            G +P   +  SL      C+ + RA
Sbjct: 435 EGLSPGNIVYNSLIHGLCTCNKWERA 460



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 117/238 (49%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           +S LI A+AK+  ++ A  +  KM + G+ P+ VT   ++ +  K+G ++ A   FE + 
Sbjct: 374 FSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMI 433

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P   VYNS+I       + +    L+  M+  GI  +   + +++ S  + G V 
Sbjct: 434 DEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVI 493

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            + ++  +M     +P + +   L+  Y  AG  D+A      M+ +G KP+    +++I
Sbjct: 494 ESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLI 553

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
             Y K + ++ AL L  E+E  G  P   TY +++  L + +    A++L  +I+E G
Sbjct: 554 NGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESG 611



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 141/310 (45%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ ++  +      ++A   LKKM  +G+ PD+VT ++L+    K G    A++ F+S+ 
Sbjct: 269 YNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMT 328

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +P+   Y +++  Y   G       L+D+M+ +GI     ++  L+ ++A+ G V 
Sbjct: 329 KRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVD 388

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  + + MR +   P   +   ++    ++G  + A   F+ MI  G  P +    S+I
Sbjct: 389 QAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLI 448

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
                 N  ++A  L+LE+   G       +  ++D   +   + E+E+L   +  +G  
Sbjct: 449 HGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVK 508

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P      +L + Y  AG   +A++ L  + +   +     +  +ING      ++DA  +
Sbjct: 509 PNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVL 568

Query: 560 HGLMEAQGFA 569
              ME+ G +
Sbjct: 569 FKEMESSGVS 578



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 139/297 (46%), Gaps = 7/297 (2%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNEN---GIVPDIVTSTVLVHMYSKAGNLDRAK 312
           NV  Y+ L+     EN  ++A  +L  M ++   G  PD+V+ T +++ + K G+ D+A 
Sbjct: 157 NVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAY 216

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
             +  +   G  PD   YNS+I A   A      M +++ M+ +G+      Y ++L  +
Sbjct: 217 STYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGY 276

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
              G  + A      MR +  +P + + +LL++   + G   +AR  FD M + G KP+ 
Sbjct: 277 CSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEI 336

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               +++  Y  K  L +   LL  + ++G  P    +++L+    +   +++A  +  K
Sbjct: 337 TTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSK 396

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGL 547
           + + G  P      ++  +  ++G  + A+  L F +   E + P +  +  +I+GL
Sbjct: 397 MRQQGLNPNAVTYGAVIGILCKSGRVEDAM--LYFEQMIDEGLSPGNIVYNSLIHGL 451



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/285 (21%), Positives = 131/285 (45%), Gaps = 4/285 (1%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           ++P  + +  L+D L +    +  +     +++   +  +  Y  L+  +A +  L +  
Sbjct: 297 VEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMH 356

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
            +L  M  NGI PD    ++L+  Y+K G +D+A   F  +R  G  P+   Y ++I   
Sbjct: 357 GLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGIL 416

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
             +G+ +  M   + MI  G+     +Y +L+     C     A ++  I+ + +    L
Sbjct: 417 CKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEEL--ILEMLDRGICL 474

Query: 398 ESCTL--LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
            +     +++++ + G   ++   F+ M+R+G KP+     ++I  Y     +D+A+ LL
Sbjct: 475 NTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLL 534

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
             +   G +P   TY+ L++   ++  + +A  L  ++   G +P
Sbjct: 535 SGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSP 579



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 141/328 (42%), Gaps = 6/328 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ +I A  K   ++ A  +L  M +NG++PD +T   ++H Y  +G    A    
Sbjct: 230 DVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFL 289

Query: 316 ESLRSHGFQPDKKVYNSMIMAYV-NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
           + +RS G +PD   Y S++M Y+   G+      + D M   G++     Y  LL+ +A 
Sbjct: 290 KKMRSDGVEPDVVTY-SLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYAT 348

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
            G +     + ++M      P     ++L+ AY + G  DQA   F  M + G  P+   
Sbjct: 349 KGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVT 408

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
             ++I    K   ++ A+    ++  +G  PG   Y  L+  L        AE+L+ ++ 
Sbjct: 409 YGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEML 468

Query: 495 ELGEAPPFKIQVSLCDMYARAG--IEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
           + G         S+ D + + G  IE + L  L      K  +    +  +ING    G 
Sbjct: 469 DRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNV--ITYNTLINGYCLAGK 526

Query: 553 LQDAQRVHGLMEAQGFAASERLKVALIS 580
           + +A ++   M + G   +      LI+
Sbjct: 527 MDEAMKLLSGMVSVGLKPNTVTYSTLIN 554



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 125/279 (44%), Gaps = 8/279 (2%)

Query: 216 ELLQPSRIDWINLLDRLREQNTQLYFKVAELVLS--EESFQTNVRDYSKLIDAHAKENCL 273
           E L P  I + +L+  L   N   + +  EL+L   +     N   ++ +ID+H KE  +
Sbjct: 435 EGLSPGNIVYNSLIHGLCTCNK--WERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRV 492

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
            ++E++ + M   G+ P+++T   L++ Y  AG +D A +    + S G +P+   Y+++
Sbjct: 493 IESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTL 552

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           I  Y    + +  + L   M +SG+      Y  +L+   Q      A ++   +RI E 
Sbjct: 553 INGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKEL--YVRITES 610

Query: 394 QPTLESCTLLVEAYGQAGD--PDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
              +E  T  +  +G   +   D A   F  +  +  K + R    MI A  K    D+A
Sbjct: 611 GTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEA 670

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
            +L +    +G  P   TY ++ + +    L+ E +QL 
Sbjct: 671 KDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLF 709



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 74/324 (22%), Positives = 124/324 (38%), Gaps = 47/324 (14%)

Query: 288 IVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGM 347
           + PD+ T  +L+    +AG LD    A  ++   GF+ D   +  ++       +    M
Sbjct: 83  VTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAM 142

Query: 348 SLVDMMITS-GIERSEEIYLALLRSFAQCGDVRGAGQITNIM---RIEEFQPTLESCTLL 403
            +V   +T  G   +   Y  LL+        + A ++ ++M   R     P + S T +
Sbjct: 143 DIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTV 202

Query: 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK--- 460
           +  + + GD D+A S +  M+  G  PD     S+IAA  K   +DKA+ +L  + K   
Sbjct: 203 INGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGV 262

Query: 461 --------------------------------DGFEPGPATYTVLVDWLGRLQLINEAEQ 488
                                           DG EP   TY++L+D+L +     EA +
Sbjct: 263 MPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARK 322

Query: 489 LLGKISELGEAPPFKIQVSLCDMYARAG--IEKKALQALGFLEAKKEQMGPDD--FERII 544
           +   +++ G  P      +L   YA  G  +E   L  L      +  + PD   F  +I
Sbjct: 323 IFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDL----MVRNGIHPDHYVFSILI 378

Query: 545 NGLLAGGFLQDAQRVHGLMEAQGF 568
                 G +  A  V   M  QG 
Sbjct: 379 CAYAKQGKVDQAMLVFSKMRQQGL 402



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/240 (21%), Positives = 96/240 (40%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ LI+ +     +++A ++L  M   G+ P+ VT + L++ Y K   ++ A   F
Sbjct: 510 NVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLF 569

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + + S G  PD   YN ++       +      L   +  SG +     Y  +L    + 
Sbjct: 570 KEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKN 629

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
                A Q+   + + + +    +  ++++A  + G  D+A+  F      G  P+    
Sbjct: 630 KLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTY 689

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             M      + LL++   L L +E +G          +V  L +   I  A   L  I E
Sbjct: 690 RLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDE 749


>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic [Vitis vinifera]
          Length = 1022

 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 127/276 (46%), Gaps = 1/276 (0%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E  F  +   Y+ LI    KE  +E+  ++  +M + GI PD  T  +L+H   + G LD
Sbjct: 586 ERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLD 645

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A   +   +S    P+   Y  MI  Y  A + + G  L   ++T  +E +  +Y  L+
Sbjct: 646 EAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLI 705

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
           R++ + G+   A ++ + MR +   PT  + + L+      G  + A+   D M + G  
Sbjct: 706 RAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLL 765

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           P+  C  ++I  Y K   +DK +N+L E+      P   TYTV++D   +   +  A +L
Sbjct: 766 PNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKL 825

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAG-IEKKALQA 524
           L ++   G  P       L + + + G IE+  L A
Sbjct: 826 LHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGKLLA 861



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/309 (20%), Positives = 130/309 (42%)

Query: 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320
           + L+    KE    DA  +  ++ E G   ++VT+  L+H   K GN+  A    + +  
Sbjct: 527 TTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLE 586

Query: 321 HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRG 380
            GF  DK  YN++I      G+ + G  L   M+  GIE     Y  L+    + G +  
Sbjct: 587 RGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDE 646

Query: 381 AGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIA 440
           A  + N  +  +  P + +  ++++ Y +A   ++    F  ++    + +     ++I 
Sbjct: 647 AVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIR 706

Query: 441 AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
           AY +     +A  L  ++   G  P  ATY+ L+  +  +  + +A+ L+ ++ + G  P
Sbjct: 707 AYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLP 766

Query: 501 PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVH 560
                 +L   Y + G   K +  L  + +         +  +I+G    G ++ A ++ 
Sbjct: 767 NVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLL 826

Query: 561 GLMEAQGFA 569
             M  +G  
Sbjct: 827 HEMVGKGIV 835



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/336 (20%), Positives = 132/336 (39%), Gaps = 7/336 (2%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L+ +     V+  + L+ +  K N LE +  + + M + G+ PD+   +  ++ + K G 
Sbjct: 270 LANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMRQ-GVSPDVYLFSTAINAFCKGGK 328

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           ++ A + F  +   G  P+   YN++I      G         + M+  G+  +   Y  
Sbjct: 329 VEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSV 388

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAY---GQAGDPDQARSNFDYMI 424
           L+    +      A  +      + F P       L++ Y   G  GD  + R +   M+
Sbjct: 389 LINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGD---MV 445

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
             G  P+     S+I  + K   +++A  +L E+   GF   P  +T ++ WL       
Sbjct: 446 SKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFE 505

Query: 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERII 544
            A + L ++      P   +  +L     + G    A++    L  K           +I
Sbjct: 506 SALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALI 565

Query: 545 NGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
           +GL   G +Q+A R+   M  +GF   +     LIS
Sbjct: 566 HGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLIS 601



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/312 (20%), Positives = 131/312 (41%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  +S  I+A  K   +EDA ++   M + G+ P++VT   L+H   K GNLD A    
Sbjct: 312 DVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFK 371

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E +   G       Y+ +I   +   +     S++   +  G   +E +Y  L+  + + 
Sbjct: 372 EKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKM 431

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G++  A +I   M  +   P   +   +++ + + G  +QA    + M+  G   +    
Sbjct: 432 GNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAF 491

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I      +  + AL  L E+      P     T LV  L +    ++A +L  ++ E
Sbjct: 492 TTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLE 551

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
            G         +L     + G  ++A++ L  +  +   +    +  +I+G    G +++
Sbjct: 552 KGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEE 611

Query: 556 AQRVHGLMEAQG 567
             ++ G M  QG
Sbjct: 612 GFKLRGEMVKQG 623



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 82/414 (19%), Positives = 159/414 (38%), Gaps = 38/414 (9%)

Query: 203 KEEDPSPLLAEWKEL-LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDY 260
           K ED   L  + ++L + P+ + + NL+  L +  N    F+  E ++ ++     +  Y
Sbjct: 328 KVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMV-KDGVNATLITY 386

Query: 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320
           S LI+   K     +A  +LK+  E G  P+ V    L+  Y K GNL  A      + S
Sbjct: 387 SVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVS 446

Query: 321 HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRG 380
            G  P+    NS+I  +   GQ +    +++ M++ G   +   +  ++           
Sbjct: 447 KGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFES 506

Query: 381 A----------------GQITNIM-----------------RIEE--FQPTLESCTLLVE 405
           A                G +T ++                 R+ E  F   L +   L+ 
Sbjct: 507 ALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIH 566

Query: 406 AYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
              + G+  +A      M+  G   D     ++I+   K+  +++   L  E+ K G EP
Sbjct: 567 GLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEP 626

Query: 466 GPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
              TY +L+  + R+  ++EA  L  +       P       + D Y +A   ++  +  
Sbjct: 627 DTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLF 686

Query: 526 GFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
             L  +  ++    +  +I      G   +A ++H  M ++G   +     +LI
Sbjct: 687 TELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLI 740



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 47/95 (49%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + +E    NV  Y+ LI  + K   ++    +L++M+   I P+ +T TV++  YSK+G+
Sbjct: 759 MRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGD 818

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
           +  A +    +   G  PD   YN +   +   G+
Sbjct: 819 MKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGK 853


>gi|15231438|ref|NP_187385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75204605|sp|Q9SFV9.1|PP218_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g07290, mitochondrial; Flags: Precursor
 gi|6642636|gb|AAF20217.1|AC012395_4 hypothetical protein [Arabidopsis thaliana]
 gi|332641002|gb|AEE74523.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 880

 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 75/330 (22%), Positives = 147/330 (44%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ LID   ++  +E+A  + +KM ++ I P ++T   L++ Y K G +  A E  
Sbjct: 335 NVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELL 394

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +     +P+ + +N ++      G+P   + L+  M+ +G+      Y  L+    + 
Sbjct: 395 TVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCRE 454

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A ++ + M   + +P   + T ++ A+ + G  D A +    M+R G   D+   
Sbjct: 455 GHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTG 514

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I    K      AL +L  L K      P +  V++D L +   + E   +LGKI++
Sbjct: 515 TTLIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKINK 574

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
           LG  P      +L D   R+G    + + L  ++          +  IINGL   G +++
Sbjct: 575 LGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEE 634

Query: 556 AQRVHGLMEAQGFAASERLKVALISSQTFN 585
           A+++   M+  G + +      ++     N
Sbjct: 635 AEKLLSAMQDSGVSPNHVTYTVMVKGYVNN 664



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 82/410 (20%), Positives = 177/410 (43%), Gaps = 18/410 (4%)

Query: 157 GLDLSDPKWTEVAEKIHERG----------EMILPEEPKPITGKCKLITDKILSLEKEED 206
           G   S   +T + + + +RG          EMI P   KP      ++ D +    K E+
Sbjct: 296 GCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMI-PRGCKPNVHTYTVLIDGLCRDGKIEE 354

Query: 207 PSPLLAEW-KELLQPSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLI 264
            + +  +  K+ + PS I +  L++   ++      F++   V+ + + + NVR +++L+
Sbjct: 355 ANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLT-VMEKRACKPNVRTFNELM 413

Query: 265 DAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQ 324
           +   +      A  +LK+M +NG+ PDIV+  VL+    + G+++ A +   S+     +
Sbjct: 414 EGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIE 473

Query: 325 PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQI 384
           PD   + ++I A+   G+  +  + + +M+  GI   E     L+    + G  R A  I
Sbjct: 474 PDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFI 533

Query: 385 TNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGK 444
              +       T  S  ++++   +     +  +    + +LG  P      +++    +
Sbjct: 534 LETLVKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIR 593

Query: 445 KNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKI 504
              +  +  +L  ++  G  P    YT++++ L +   + EAE+LL  + + G +P    
Sbjct: 594 SGDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVT 653

Query: 505 QVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQ 554
              +   Y   G   +AL+ +  +  +  ++     +RI + LL G  L 
Sbjct: 654 YTVMVKGYVNNGKLDRALETVRAMVERGYELN----DRIYSSLLQGFVLS 699



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 80/351 (22%), Positives = 139/351 (39%)

Query: 221 SRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERIL 280
           S I    LL   R  N +   KV +++  E +   N   YS LI    +   LE+A  + 
Sbjct: 230 SHIGTSLLLGFCRGLNLRDALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLK 289

Query: 281 KKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNA 340
            +M E G  P   T TVL+      G +D+A   F+ +   G +P+   Y  +I      
Sbjct: 290 DQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRD 349

Query: 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
           G+ +    +   M+   I  S   Y AL+  + + G V  A ++  +M     +P + + 
Sbjct: 350 GKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTF 409

Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
             L+E   + G P +A      M+  G  PD      +I    ++  ++ A  LL  +  
Sbjct: 410 NELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNC 469

Query: 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKK 520
              EP   T+T +++   +    + A   LG +   G +       +L D   + G  + 
Sbjct: 470 FDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRD 529

Query: 521 ALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAAS 571
           AL  L  L   +    P     I++ L  G  +++   + G +   G   S
Sbjct: 530 ALFILETLVKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPS 580


>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 577

 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 147/321 (45%), Gaps = 6/321 (1%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           E FQ NV  Y  LI+   K      A R+L+ M +    PD+V  T ++    K   + +
Sbjct: 158 EGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQ 217

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A   F  +   G  P    YNS+I A  N  + K   +L++ M+ S I  +  I+  ++ 
Sbjct: 218 AFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVD 277

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
           +  + G V  A  + ++M     +P + +   L++ +    + D+A   FD M+  G  P
Sbjct: 278 ALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAP 337

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           D    +++I  Y K   ++KA+ L  E+ +    P   TY+ L+  L  +  + +A  L 
Sbjct: 338 DVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALF 397

Query: 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEA-KKEQMGPD--DFERIINGL 547
            ++   G+ P F   VS C +       ++  +A+  L+A +   M PD   +  +I+G+
Sbjct: 398 HEMVTRGQIPDF---VSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGM 454

Query: 548 LAGGFLQDAQRVHGLMEAQGF 568
              G L+ A+ +   + ++G 
Sbjct: 455 CRAGELEAARDLFSNLSSKGL 475



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/370 (21%), Positives = 156/370 (42%), Gaps = 18/370 (4%)

Query: 219 QPSRIDWINLLDRLRE--QNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE-- 274
           QP  + + +++D L +  Q TQ +   +E++   +    ++  Y+ LI  HA  N  E  
Sbjct: 196 QPDVVVYTSIIDSLCKDRQVTQAFNLFSEMI--HQGISPSIFTYNSLI--HALCNLCEWK 251

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
               +L +M  + I+P++V  + +V    K G +  A +  + +   G +P+   YN+++
Sbjct: 252 HVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALM 311

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
             +    +    + + D M+  G       Y  L+  + +   +  A  +   M  +E  
Sbjct: 312 DGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELI 371

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P   + + L+      G    A + F  M+  G  PD      ++    K   LD+A+ L
Sbjct: 372 PNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIAL 431

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
           L  +E    +P    YT+++D + R   +  A  L   +S  G  P       + +   +
Sbjct: 432 LKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQ 491

Query: 515 AGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGL-----MEAQGFA 569
            G+  +A +  G  E K++   P+        L+  GFL++ + + G+     M A+GF+
Sbjct: 492 QGLLAEASKLFG--EMKRKGYSPNGCTY---NLITRGFLRNNETLRGIQLLQEMLARGFS 546

Query: 570 ASERLKVALI 579
           A       L+
Sbjct: 547 ADVSTSTVLV 556



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 74/334 (22%), Positives = 147/334 (44%), Gaps = 18/334 (5%)

Query: 211 LAEWKEL-----------LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVR 258
           L EWK +           + P+ + +  ++D L +E        V ++++ +   + NV 
Sbjct: 247 LCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMI-KRGVEPNVV 305

Query: 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318
            Y+ L+D H   + +++A ++   M   G  PD+V+ + L++ Y K   +++A   FE +
Sbjct: 306 TYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEM 365

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
                 P+   Y++++    + G+ +  ++L   M+T G       Y  LL     C + 
Sbjct: 366 CRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYL--CKNR 423

Query: 379 RGAGQITNIMRIE--EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
           R    I  +  IE     P ++  T++++   +AG+ + AR  F  +   G  P+     
Sbjct: 424 RLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYT 483

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
            MI    ++ LL +A  L  E+++ G+ P   TY ++     R        QLL ++   
Sbjct: 484 IMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLAR 543

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALG-FLE 529
           G +        L +M +  G+++   Q L  FL+
Sbjct: 544 GFSADVSTSTVLVEMLSDDGLDQSVKQILSEFLQ 577



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 63/323 (19%), Positives = 124/323 (38%), Gaps = 21/323 (6%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           ++ D++KL+ +  K         +  +M+  GI P+I T  +L++ +     L  A    
Sbjct: 58  SIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFCHLQRLGFAFSVL 117

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G QP+   +N++I      G+    + L D MI  G + +   Y  L+    + 
Sbjct: 118 AKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKV 177

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G    A ++   M     QP +   T ++++  +     QA + F  MI  G  P     
Sbjct: 178 GSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTY 237

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            S+I A            LL E+      P    ++ +VD L +   + EA  ++     
Sbjct: 238 NSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVV----- 292

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
                         DM  + G+E   +     ++    +   D+  ++ + ++  GF  D
Sbjct: 293 --------------DMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPD 338

Query: 556 AQRVHGLMEAQGFAASERLKVAL 578
                 L+   G+   +R++ A+
Sbjct: 339 VVSYSTLI--NGYCKIQRIEKAM 359


>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 777

 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 136/287 (47%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI A  KE  +E+  ++ ++M   GI PD+ T  +L+H     G ++ A   +   +
Sbjct: 480 YNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECK 539

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
            +G  PD   Y  MI  Y  A + + G  L   M+T  IE++  +Y  L+R++ + G++R
Sbjct: 540 KNGNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMR 599

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++ + MR      T  + + L+      G  D A    D M + G  P+  C  ++I
Sbjct: 600 EAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALI 659

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             Y K   + K  ++L E+  +   P   TYT++++   +L  +  A +LL ++++ G  
Sbjct: 660 GGYCKLGQMHKVDSILQEMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIV 719

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
           P      +L + + + G  ++AL+    +      +    +  +I+G
Sbjct: 720 PDAVTYNALTNGFCKEGKMEEALKVCDLMSTGGISLDDITYTTLIDG 766



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 121/285 (42%)

Query: 285 ENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPK 344
           E G   + VTS  L+H   +AG+ + A +  + +   G   D   YN++I+A    G+ +
Sbjct: 435 EKGFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLERGLVLDSISYNTLILACCKEGKVE 494

Query: 345 LGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
            G  L + M+  GI+     Y  LL      G +  AG + +  +     P   +  +++
Sbjct: 495 EGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMI 554

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
           + Y +A   ++    F  M+ +  + +     ++I AY +   + +A  L  ++   G  
Sbjct: 555 DGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRGIP 614

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQA 524
              ATY+ L+  L  + L++ A QLL ++ + G +P      +L   Y + G   K    
Sbjct: 615 QTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSI 674

Query: 525 LGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
           L  +           +  +ING    G ++ A ++   M  +G  
Sbjct: 675 LQEMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIV 719



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 96/222 (43%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           Q ++  Y+ L+        +E+A  +  +  +NG  PD  T  +++  Y KA  ++  ++
Sbjct: 509 QPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKANRVEEGEK 568

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            F+ + +   + +  VY ++I AY   G  +    L D M + GI ++   Y +L+   +
Sbjct: 569 LFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLS 628

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
             G V  A Q+ + MR E   P +   T L+  Y + G   +  S    M      P+  
Sbjct: 629 NIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQEMSINNVHPNKI 688

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
               MI  + K   +  A  LL E+ + G  P   TY  L +
Sbjct: 689 TYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYNALTN 730



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 70/309 (22%), Positives = 133/309 (43%), Gaps = 2/309 (0%)

Query: 218 LQPSRIDWINLLDRLREQN-TQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L PS      LL  L + N  ++ ++V + ++       +V  +S +++A      ++DA
Sbjct: 158 LFPSLKTCNFLLSSLVKANEVKMSYQVFD-IMCHCGVTPDVYLFSTMVNAFCTGGRVDDA 216

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
             + +KM + G+ P++VT   ++H   K G LD A +  E +     +P    Y  +I  
Sbjct: 217 IELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLVTYGVLING 276

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
            V   +      ++  M   G   +  +Y  L+  + + G++  A QI + M      P 
Sbjct: 277 LVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMISNGISPN 336

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
             +C  L++ Y ++   + A    + M+  G   +     S+I     K   D AL  ++
Sbjct: 337 SVTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALLFIM 396

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
           E+    F+P     T+LV  L +    +EA +L  ++ E G A       +L      AG
Sbjct: 397 EMLLRNFKPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAG 456

Query: 517 IEKKALQAL 525
            +++A + L
Sbjct: 457 SKEEAAKLL 465



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 98/206 (47%), Gaps = 5/206 (2%)

Query: 323 FQPDKKVYNSMIMAYVNAGQPK-LGMSLV----DMMITSGIERSEEIYLALLRSFAQCGD 377
           F+P   V    ++ +V + Q K LG  +V     ++   G+  S +    LL S  +  +
Sbjct: 118 FEPAVAVTVVDLLIHVYSTQFKHLGFGVVFELFSLLANKGLFPSLKTCNFLLSSLVKANE 177

Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
           V+ + Q+ +IM      P +   + +V A+   G  D A   F  M ++G  P+     +
Sbjct: 178 VKMSYQVFDIMCHCGVTPDVYLFSTMVNAFCTGGRVDDAIELFRKMEKVGVAPNVVTYNN 237

Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           +I    K   LD+A     ++EK+  +P   TY VL++ L +L+  +EA  +L ++S+ G
Sbjct: 238 IIHGLCKNGRLDEAFQFKEKMEKERVKPSLVTYGVLINGLVKLERFDEANCILKEMSDRG 297

Query: 498 EAPPFKIQVSLCDMYARAGIEKKALQ 523
            AP   +  +L D Y R G    ALQ
Sbjct: 298 YAPNNVVYNTLIDGYCRIGNISTALQ 323



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 61/122 (50%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + +E    NV  Y+ LI  + K   +   + IL++M+ N + P+ +T T++++ + K GN
Sbjct: 643 MRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQEMSINNVHPNKITYTIMINGHCKLGN 702

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A +    +   G  PD   YN++   +   G+ +  + + D+M T GI   +  Y  
Sbjct: 703 MKAAAKLLNEMAQKGIVPDAVTYNALTNGFCKEGKMEEALKVCDLMSTGGISLDDITYTT 762

Query: 368 LL 369
           L+
Sbjct: 763 LI 764



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/231 (21%), Positives = 95/231 (41%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           +L+ +    +++  + L+ +  K N ++ + ++   M   G+ PD+   + +V+ +   G
Sbjct: 152 LLANKGLFPSLKTCNFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMVNAFCTGG 211

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            +D A E F  +   G  P+   YN++I      G+        + M    ++ S   Y 
Sbjct: 212 RVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLVTYG 271

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+    +      A  I   M    + P       L++ Y + G+   A    D MI  
Sbjct: 272 VLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMISN 331

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
           G  P+     S+I  Y K N ++ A +LL E+   G      T+T ++  L
Sbjct: 332 GISPNSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQGTFTSVIHRL 382



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/296 (20%), Positives = 122/296 (41%), Gaps = 6/296 (2%)

Query: 287 GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLG 346
           G+ P + T   L+    KA  +  + + F+ +   G  PD  ++++M+ A+   G+    
Sbjct: 157 GLFPSLKTCNFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMVNAFCTGGRVDDA 216

Query: 347 MSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA 406
           + L   M   G+  +   Y  ++    + G +  A Q    M  E  +P+L +  +L+  
Sbjct: 217 IELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLVTYGVLING 276

Query: 407 YGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG 466
             +    D+A      M   G+ P++    ++I  Y +   +  AL +  ++  +G  P 
Sbjct: 277 LVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMISNGISPN 336

Query: 467 PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALG 526
             T   L+    +   +  AE LL ++   G       Q +   +  R  ++ +   AL 
Sbjct: 337 SVTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVIN---QGTFTSVIHRLCLKCRFDSALL 393

Query: 527 F-LEAKKEQMGPDD--FERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
           F +E       P+D     +++GL   G   +A  +   +  +GFAA+     ALI
Sbjct: 394 FIMEMLLRNFKPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALI 449



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/231 (22%), Positives = 93/231 (40%), Gaps = 5/231 (2%)

Query: 290 PDIVTSTV--LVHMYS---KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPK 344
           P +  + V  L+H+YS   K        E F  L + G  P  K  N ++ + V A + K
Sbjct: 120 PAVAVTVVDLLIHVYSTQFKHLGFGVVFELFSLLANKGLFPSLKTCNFLLSSLVKANEVK 179

Query: 345 LGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
           +   + D+M   G+     ++  ++ +F   G V  A ++   M      P + +   ++
Sbjct: 180 MSYQVFDIMCHCGVTPDVYLFSTMVNAFCTGGRVDDAIELFRKMEKVGVAPNVVTYNNII 239

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
               + G  D+A    + M +   KP       +I    K    D+A  +L E+   G+ 
Sbjct: 240 HGLCKNGRLDEAFQFKEKMEKERVKPSLVTYGVLINGLVKLERFDEANCILKEMSDRGYA 299

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
           P    Y  L+D   R+  I+ A Q+   +   G +P      SL   Y ++
Sbjct: 300 PNNVVYNTLIDGYCRIGNISTALQIRDDMISNGISPNSVTCNSLIQGYCKS 350



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 75/400 (18%), Positives = 159/400 (39%), Gaps = 3/400 (0%)

Query: 182 EEPKPITGKCKLITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLD-RLREQNTQL 239
           E  KP      ++ + ++ LE+ ++ + +L E  +    P+ + +  L+D   R  N   
Sbjct: 261 ERVKPSLVTYGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNIST 320

Query: 240 YFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLV 299
             ++ + ++S      N    + LI  + K N +E AE +L++M   G V +  T T ++
Sbjct: 321 ALQIRDDMISN-GISPNSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQGTFTSVI 379

Query: 300 HMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
           H        D A      +    F+P+  +   ++      G+    + L   ++  G  
Sbjct: 380 HRLCLKCRFDSALLFIMEMLLRNFKPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGFA 439

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
            +     AL+    + G    A ++   M          S   L+ A  + G  ++    
Sbjct: 440 ANTVTSNALIHGLCEAGSKEEAAKLLKEMLERGLVLDSISYNTLILACCKEGKVEEGFKL 499

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
            + M+R G +PD      ++        +++A  L  E +K+G  P   TY +++D   +
Sbjct: 500 KEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCK 559

Query: 480 LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD 539
              + E E+L  ++  +       +  +L   Y   G  ++A +    + ++        
Sbjct: 560 ANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRGIPQTSAT 619

Query: 540 FERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
           +  +I+GL   G +  A ++   M  +G + +     ALI
Sbjct: 620 YSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALI 659


>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
 gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 87/371 (23%), Positives = 159/371 (42%), Gaps = 16/371 (4%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESF--------QTNVRDYSKLIDAHAK 269
           LQP+ + +  L++ L         KV +   + E F        + +V  Y+ +I+   K
Sbjct: 164 LQPTIVTFTTLINWL--------CKVGKFAQAMELFDDMVARGCRPDVYTYTTIINGLCK 215

Query: 270 ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKV 329
                 A  +LKKM E G  P++VT + ++  + K   ++ A + F  ++  G  PD   
Sbjct: 216 IGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFT 275

Query: 330 YNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389
           YNS+I    N  Q K   +L++ M +  I      +  L+ +  + G V  A  +   M 
Sbjct: 276 YNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMT 335

Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD 449
               +P + + + L+  Y    +  +AR  FD MI  G KPD      +I  Y K   +D
Sbjct: 336 EMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRID 395

Query: 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLC 509
           +A  L  E+   G  P   +Y  L+  L +L  + EA  L   +   G  P       L 
Sbjct: 396 EAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILL 455

Query: 510 DMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
           D + + G   KA +    +++   +     +  +I+ +   G L+DA+++   +  +G  
Sbjct: 456 DGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKLFSELFVKGLQ 515

Query: 570 ASERLKVALIS 580
            + ++   +I+
Sbjct: 516 PNAQIYTTIIN 526



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 133/325 (40%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E   Q NV  YS +ID+H K+  + +A  I   M   GI PDI T   L+        
Sbjct: 229 MEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQ 288

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
              A      +RS    PD   +N ++      G+      ++  M   G+E     Y +
Sbjct: 289 WKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSS 348

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+  ++   +V  A ++ + M  +  +P + S  +L+  Y +    D+A+  F+ MI  G
Sbjct: 349 LMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQG 408

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P++    ++I    +   L +A NL   +  +G  P   TY++L+D   +     +A 
Sbjct: 409 LTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAF 468

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
           +L   +      P   +   L D   ++G  + A +    L  K  Q     +  IINGL
Sbjct: 469 RLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGL 528

Query: 548 LAGGFLQDAQRVHGLMEAQGFAASE 572
              G L +A      ME  G    E
Sbjct: 529 CKEGLLDEALEAFRNMEEDGCPPDE 553



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 144/306 (47%), Gaps = 11/306 (3%)

Query: 198 ILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKVAEL-----VLSEE 251
           + +  + ++ S LL E + L + P  + +  L+D + ++      KV+E       ++E 
Sbjct: 283 LCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKEG-----KVSEAQGVLKTMTEM 337

Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311
             + +V  YS L+  ++  + + +A ++   M   G  PD+ +  +L++ Y K   +D A
Sbjct: 338 GVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEA 397

Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
           K+ F  +   G  P+   YN++I      G  +   +L   M T+G   +   Y  LL  
Sbjct: 398 KQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDG 457

Query: 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
           F + G    A ++   M+    +P L    +L++A  ++G+   AR  F  +   G +P+
Sbjct: 458 FCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKLFSELFVKGLQPN 517

Query: 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
            +   ++I    K+ LLD+AL     +E+DG  P   +Y V++      +  + A QL+G
Sbjct: 518 AQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEISYNVIIRGFLHHKDESRAVQLIG 577

Query: 492 KISELG 497
           ++ + G
Sbjct: 578 EMRDKG 583



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 135/317 (42%), Gaps = 7/317 (2%)

Query: 260 YSKLIDAHAKENCLEDAE-RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318
           ++KL+ A  K     D    + K+M   G+ P+I T ++L++ +S    +D A      +
Sbjct: 100 FTKLLSAIVKMGQYYDTVISLTKQMELAGLSPNIYTLSILINCFSHLQRVDLAFSVLAKI 159

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
              G QP    + ++I      G+    M L D M+  G       Y  ++    + G+ 
Sbjct: 160 IKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIINGLCKIGET 219

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             A  +   M     QP + + + +++++ +    ++A   F YM   G  PD     S+
Sbjct: 220 AAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSL 279

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           I      +   +A  LL E+      P   T+ VLVD + +   ++EA+ +L  ++E+G 
Sbjct: 280 IQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGV 339

Query: 499 APPFKIQVSLCDMYARAGIEKKALQALGFLEAK-KEQMGPDDFER--IINGLLAGGFLQD 555
            P      SL  MY  + +  + ++A    +A   +   PD F    +ING      + +
Sbjct: 340 EPDVVTYSSL--MYGYS-LRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDE 396

Query: 556 AQRVHGLMEAQGFAASE 572
           A+++   M  QG   + 
Sbjct: 397 AKQLFNEMIHQGLTPNN 413



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 59/138 (42%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  YS L+D   K+     A R+ + M      P++V   +L+    K+GNL  A++ F
Sbjct: 447 NLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKLF 506

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             L   G QP+ ++Y ++I      G     +     M   G    E  Y  ++R F   
Sbjct: 507 SELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEISYNVIIRGFLHH 566

Query: 376 GDVRGAGQITNIMRIEEF 393
            D   A Q+   MR + F
Sbjct: 567 KDESRAVQLIGEMRDKGF 584



 Score = 38.9 bits (89), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 38/79 (48%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L  +  Q N + Y+ +I+   KE  L++A    + M E+G  PD ++  V++  +    +
Sbjct: 509 LFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEISYNVIIRGFLHHKD 568

Query: 308 LDRAKEAFESLRSHGFQPD 326
             RA +    +R  GF  D
Sbjct: 569 ESRAVQLIGEMRDKGFIAD 587


>gi|326528911|dbj|BAJ97477.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 913

 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 121/239 (50%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
            V  Y+ LI    ++N +E A  +L KM+  GI P+  T T+++  Y+  G++ +A E F
Sbjct: 591 TVMTYNALIHGLIRKNQVERAVSVLNKMSIAGITPNEHTYTIIMRGYAATGDIAKAFEYF 650

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             ++  G + D  +Y +++ A   +G+ +  +++   M +  I R+  +Y  L+  +A+ 
Sbjct: 651 TKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSSQKIARNTFVYNILIDGWARR 710

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           GDV  A  +   M+ +   P + + T  + A  +AGD  +A++  D M  +G KP+ +  
Sbjct: 711 GDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQTVIDEMSDVGLKPNLKTY 770

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
            ++I  + + +L D+AL    E++  G +P  A Y  LV  L     + E     G +S
Sbjct: 771 TTLIKGWARASLPDRALKCFEEMKLAGLKPDEAAYHCLVTSLLSRATVMEGSTYTGILS 829



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 81/371 (21%), Positives = 154/371 (41%), Gaps = 47/371 (12%)

Query: 238 QLYFKVAELV--------LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIV 289
            LY K+ ++         +     + N + YS LI      +   +A RI ++M ++G+ 
Sbjct: 460 NLYVKIGKVAKAIAISKEMESSGIKHNNKTYSMLISGFIHLHDFTNAFRIFEEMLKSGLQ 519

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL 349
           PD     +L+  + K GN+DRA    E ++    QP  + +  +I  +  AG  K  + +
Sbjct: 520 PDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFAVAGDMKRALDI 579

Query: 350 VDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409
           +D+M  SG   +   Y AL+    +   V  A  + N M I    P   + T+++  Y  
Sbjct: 580 LDLMRRSGCAPTVMTYNALIHGLIRKNQVERAVSVLNKMSIAGITPNEHTYTIIMRGYAA 639

Query: 410 AGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL----------------- 452
            GD  +A   F  +   G K D     +++ A  K   +  AL                 
Sbjct: 640 TGDIAKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSSQKIARNTFV 699

Query: 453 ------------------NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
                             +L+ ++++DG  P   TYT  ++   +   +  A+ ++ ++S
Sbjct: 700 YNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQTVIDEMS 759

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGF 552
           ++G  P  K   +L   +ARA +  +AL+   F E K   + PD+  +  ++  LL+   
Sbjct: 760 DVGLKPNLKTYTTLIKGWARASLPDRALKC--FEEMKLAGLKPDEAAYHCLVTSLLSRAT 817

Query: 553 LQDAQRVHGLM 563
           + +     G++
Sbjct: 818 VMEGSTYTGIL 828



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 143/331 (43%), Gaps = 5/331 (1%)

Query: 254 QTNVRD-----YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNL 308
           +TN+ D     YS +I AH +   ++ AE ++ +M E+GI   I     ++H Y+   + 
Sbjct: 374 KTNLGDLNGIIYSNIIHAHCQSGNMDRAEELVHEMEEDGIDAPIDAYHSMMHGYTIIQDE 433

Query: 309 DRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLAL 368
            +    FE L+   F P    Y  +I  YV  G+    +++   M +SGI+ + + Y  L
Sbjct: 434 KKCLIVFERLKECCFTPSIISYGCLINLYVKIGKVAKAIAISKEMESSGIKHNNKTYSML 493

Query: 369 LRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH 428
           +  F    D   A +I   M     QP      LL+EA+ + G+ D+A    + M +   
Sbjct: 494 ISGFIHLHDFTNAFRIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERM 553

Query: 429 KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQ 488
           +P +R    +I  +     + +AL++L  + + G  P   TY  L+  L R   +  A  
Sbjct: 554 QPSNRAFRPIIEGFAVAGDMKRALDILDLMRRSGCAPTVMTYNALIHGLIRKNQVERAVS 613

Query: 489 LLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLL 548
           +L K+S  G  P       +   YA  G   KA +    ++    ++    +E ++    
Sbjct: 614 VLNKMSIAGITPNEHTYTIIMRGYAATGDIAKAFEYFTKIKEGGLKLDVYIYETLLRACC 673

Query: 549 AGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
             G +Q A  V   M +Q  A +  +   LI
Sbjct: 674 KSGRMQSALAVTREMSSQKIARNTFVYNILI 704



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 128/320 (40%), Gaps = 39/320 (12%)

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           +++  Y+K G+   A+  FE++R+ G +P+  V+ S++ AY  A   +  +S  + M   
Sbjct: 282 LMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCTEEMKAE 341

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAG--------------------------QITNIMRI 390
           GIE +   Y  L+  F +  D + A                           Q  N+ R 
Sbjct: 342 GIELTIVTYSILISGFGKINDTQSADNLFKEAKTNLGDLNGIIYSNIIHAHCQSGNMDRA 401

Query: 391 EEFQPTLESCTL---------LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441
           EE    +E   +         ++  Y    D  +    F+ +      P       +I  
Sbjct: 402 EELVHEMEEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVFERLKECCFTPSIISYGCLINL 461

Query: 442 YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
           Y K   + KA+ +  E+E  G +    TY++L+     L     A ++  ++ + G  P 
Sbjct: 462 YVKIGKVAKAIAISKEMESSGIKHNNKTYSMLISGFIHLHDFTNAFRIFEEMLKSGLQPD 521

Query: 502 FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQDAQRV 559
             I   L + + + G   +A++ L   + +KE+M P +  F  II G    G ++ A  +
Sbjct: 522 RAIYNLLIEAFCKMGNMDRAIRILE--KMQKERMQPSNRAFRPIIEGFAVAGDMKRALDI 579

Query: 560 HGLMEAQGFAASERLKVALI 579
             LM   G A +     ALI
Sbjct: 580 LDLMRRSGCAPTVMTYNALI 599



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 69/143 (48%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +S +    N   Y+ LID  A+   + +A  ++K+M E+G+ P+I T T  ++   KAG+
Sbjct: 688 MSSQKIARNTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGD 747

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           + RA+   + +   G +P+ K Y ++I  +  A  P   +   + M  +G++  E  Y  
Sbjct: 748 MQRAQTVIDEMSDVGLKPNLKTYTTLIKGWARASLPDRALKCFEEMKLAGLKPDEAAYHC 807

Query: 368 LLRSFAQCGDVRGAGQITNIMRI 390
           L+ S      V      T I+ +
Sbjct: 808 LVTSLLSRATVMEGSTYTGILSV 830



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/237 (20%), Positives = 107/237 (45%), Gaps = 2/237 (0%)

Query: 324 QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQ 383
           +P ++ +  MI+ Y   G      +  + M   GIE +  ++ +L+ ++A   D+RGA  
Sbjct: 274 KPSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALS 333

Query: 384 ITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF-DYMIRLGHKPDDRCTASMIAAY 442
            T  M+ E  + T+ + ++L+  +G+  D   A + F +    LG   +    +++I A+
Sbjct: 334 CTEEMKAEGIELTIVTYSILISGFGKINDTQSADNLFKEAKTNLG-DLNGIIYSNIIHAH 392

Query: 443 GKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPF 502
            +   +D+A  L+ E+E+DG +     Y  ++     +Q   +   +  ++ E    P  
Sbjct: 393 CQSGNMDRAEELVHEMEEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVFERLKECCFTPSI 452

Query: 503 KIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
                L ++Y + G   KA+     +E+   +     +  +I+G +      +A R+
Sbjct: 453 ISYGCLINLYVKIGKVAKAIAISKEMESSGIKHNNKTYSMLISGFIHLHDFTNAFRI 509


>gi|356529971|ref|XP_003533559.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Glycine max]
          Length = 693

 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 142/319 (44%), Gaps = 5/319 (1%)

Query: 214 WKELLQPSRIDWINLLDRLREQN-TQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC 272
           WK    P+      L+D L ++  T+  F++   ++  E+ + NV  Y+ +I  + ++  
Sbjct: 303 WK----PNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCRDEK 358

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           +  AE +L +M E G+ P+  T T L+  + KAGN +RA E    +   GF P+   YN+
Sbjct: 359 MNRAEMLLSRMKEQGLAPNTNTYTTLIDGHCKAGNFERAYELMNVMNEEGFSPNVCTYNA 418

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           ++      G+ +    ++     +G++  +  Y  L+    +  +++ A  + N M    
Sbjct: 419 IVDGLCKKGRVQEAYKVLKSGFRNGLDADKVTYTILISEHCKQAEIKQALVLFNKMVKSG 478

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
            QP + S T L+  + +     ++   F+  +R G  P ++   SMI  Y ++  L  AL
Sbjct: 479 IQPDIHSYTTLIAVFCREKRMKESEMFFEEAVRFGLVPTNKTYTSMICGYCREGNLRLAL 538

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
                +   G      TY  L+  L +   ++EA  L   + E G  P    +V+L   Y
Sbjct: 539 KFFHRMSDHGCASDSITYGALISGLCKQSKLDEARCLYDAMIEKGLTPCEVTRVTLAYEY 598

Query: 513 ARAGIEKKALQALGFLEAK 531
            +      A+  L  LE K
Sbjct: 599 CKIDDGCSAMVVLERLEKK 617



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 84/357 (23%), Positives = 164/357 (45%), Gaps = 10/357 (2%)

Query: 208 SPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAH 267
           + L ++   ++  S  +W     + R   T+LY   A  ++S ++F+        ++ + 
Sbjct: 84  ASLASDAGSMVALSFFNWAIASSKFR-HFTRLYIACAASLISNKNFEKAHEVMQCMVKSF 142

Query: 268 AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK 327
           A+   +++A  ++ +M+  G+ P   T   +V + ++ G ++ A+  F+ + + G QP+ 
Sbjct: 143 AEIGRVKEAIEMVIEMHNQGLAPSTKTLNWVVKIVTEMGLVEYAENLFDEMCARGVQPNC 202

Query: 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNI 387
             Y  M++ Y   G        +  MI  G          ++R F + G V  A  +   
Sbjct: 203 VSYRVMVVGYCKLGNVLESDRWLGGMIERGFVVDNATLSLIVREFCEKGFVTRA--LWYF 260

Query: 388 MRIEE--FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKK 445
            R  E   +P L + T ++E   + G   QA    + M+  G KP+     ++I    KK
Sbjct: 261 RRFCEMGLRPNLINFTCMIEGLCKRGSVKQAFEMLEEMVGRGWKPNVYTHTALIDGLCKK 320

Query: 446 NLLDKALNLLLELEK-DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKI 504
              +KA  L L+L + +  +P   TYT ++    R + +N AE LL ++ E G AP    
Sbjct: 321 GWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCRDEKMNRAEMLLSRMKEQGLAPNTNT 380

Query: 505 QVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRV 559
             +L D + +AG  ++A + +  +   +E   P+   +  I++GL   G +Q+A +V
Sbjct: 381 YTTLIDGHCKAGNFERAYELMNVMN--EEGFSPNVCTYNAIVDGLCKKGRVQEAYKV 435


>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
 gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
          Length = 529

 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 143/317 (45%), Gaps = 3/317 (0%)

Query: 256 NVRDYSKLIDAHAKEN---CLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           NV  Y+ LID + K      +  A+ ILK+M   GI P+ VT  +L+  + K  N+  A 
Sbjct: 189 NVITYNTLIDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAM 248

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
             F  ++  G +P+   YN +I    + G+    ++L D M++S +E +   +  L+  F
Sbjct: 249 RVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGF 308

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            +   V  A  + N M  +   P   + T L++AY + G  + A + ++ MI  G  P+ 
Sbjct: 309 CKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEV 368

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
                +IA   +K  +  A +L+ E+          TY +L+D L +     +A +LL +
Sbjct: 369 STYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDE 428

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
           + E G  P      +L D Y R G  + AL     +E K +Q        +I G    G 
Sbjct: 429 MFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKGKQANVVTHNVLIKGFCLKGR 488

Query: 553 LQDAQRVHGLMEAQGFA 569
           L+DA  +   M  +G  
Sbjct: 489 LEDANGLLNEMLERGLV 505



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 139/304 (45%), Gaps = 7/304 (2%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F+ ++   + L+    KE+   D E + ++M +  I  ++++  ++V+   K G L+RA 
Sbjct: 116 FKLSLISCNPLLSGLVKESENGDMEFVYREMIKRKIELNVISFNIVVNGLCKVGKLNRAG 175

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGM-----SLVDMMITSGIERSEEIYLA 367
           +  E ++  G  P+   YN++I  Y   G  ++G      +++  M+  GI  +E  Y  
Sbjct: 176 DVIEDMKVWGVSPNVITYNTLIDGYCKMG--RIGKMYKADAILKEMVAKGICPNEVTYNI 233

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+  F +  +V GA ++   M+ +  +P + +  +L+      G  D+A +  D M+   
Sbjct: 234 LIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSD 293

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            +P+      +I  + K   +++A+NL  ++EK G +P   TYT L+D   +   + +A 
Sbjct: 294 LEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAF 353

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
            L   + + G  P       L     R G  K A   +  + +KK       +  +I+ L
Sbjct: 354 ALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSL 413

Query: 548 LAGG 551
              G
Sbjct: 414 CKKG 417



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 119/256 (46%), Gaps = 6/256 (2%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +  +  + NV  Y+ LI+    +  +++A  +  +M  + + P++VT  VL++ + K   
Sbjct: 254 MQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKT 313

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           ++ A   F  +   G  P+   Y ++I AY   G+ +   +L +MMI  GI      Y  
Sbjct: 314 VNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNC 373

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    + GDV+ A  + N M  ++    + +  +L+++  + G+  +A    D M   G
Sbjct: 374 LIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKG 433

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL---GRLQLIN 484
             P      +++  Y ++  L  AL +   +E+ G +    T+ VL+      GRL+   
Sbjct: 434 LNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKGKQANVVTHNVLIKGFCLKGRLE--- 490

Query: 485 EAEQLLGKISELGEAP 500
           +A  LL ++ E G  P
Sbjct: 491 DANGLLNEMLERGLVP 506



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 87/192 (45%), Gaps = 1/192 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + ++    N   Y+ LIDA+ K+  +EDA  +   M + GI P++ T   L+    + G+
Sbjct: 324 MEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGD 383

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A+     + S     D   YN +I +    G+ +  + L+D M   G+  S   Y  
Sbjct: 384 VKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNT 443

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+  + + G++R A  +   M  +  Q  + +  +L++ +   G  + A    + M+  G
Sbjct: 444 LMDGYCREGNLRAALIVRTRMERKGKQANVVTHNVLIKGFCLKGRLEDANGLLNEMLERG 503

Query: 428 HKPDDRCTASMI 439
             P +R T  +I
Sbjct: 504 LVP-NRTTYEII 514


>gi|297806221|ref|XP_002870994.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316831|gb|EFH47253.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 819

 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/323 (22%), Positives = 142/323 (43%), Gaps = 5/323 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L E+ F  +V  Y+ LI A A      +A  + KKM E G  P ++T  V+++++ K G 
Sbjct: 199 LQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEEGCKPTLITYNVILNVFGKMGT 258

Query: 308 -LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
             ++     E ++S G  PD   YN++I         +    + + M  +G    +  Y 
Sbjct: 259 PWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSHDKVTYN 318

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           ALL  + +    + A ++ N M +  F P++ +   L+ AY + G  D+A    + M   
Sbjct: 319 ALLDVYGKSHRPKEAMKVLNEMELNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEK 378

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G KPD     ++++ + +   ++ A+N+  E+   G +P   T+   +   G      + 
Sbjct: 379 GTKPDVFTYTTLLSGFERAGKVESAMNIFEEMRNAGCKPNICTFNAFIKMYGNRGKFVDM 438

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP--DDFERII 544
            ++  +I+  G +P      +L  ++ + G++ +      F E K+    P  + F  +I
Sbjct: 439 MKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGV--FKEMKRAGFVPERETFNTLI 496

Query: 545 NGLLAGGFLQDAQRVHGLMEAQG 567
           +     G  + A  V+  M   G
Sbjct: 497 SAYSRCGSFEQAMTVYRRMLDAG 519



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 135/314 (42%), Gaps = 35/314 (11%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F  ++  Y+ LI A+A++  L++A  +  +M E G  PD+ T T L+  + +AG ++ A 
Sbjct: 345 FSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAM 404

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
             FE +R+ G +P+   +N+ I  Y N G+    M + D +   G+      +  LL  F
Sbjct: 405 NIFEEMRNAGCKPNICTFNAFIKMYGNRGKFVDMMKIFDEINVCGLSPDIVTWNTLLAVF 464

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            Q G       +   M+   F P  E+   L+ AY + G  +QA + +  M+  G  PD 
Sbjct: 465 GQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDL 524

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYT--------------------- 471
               +++AA  +  + +++  +L E+E    +P   TY                      
Sbjct: 525 STYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEE 584

Query: 472 --------------VLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI 517
                          LV    +  L+ EAE+   ++ E G +P      S+  +Y R  +
Sbjct: 585 VYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQM 644

Query: 518 EKKALQALGFLEAK 531
             KA + L +++ +
Sbjct: 645 VGKANEVLDYMKER 658



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 124/264 (46%), Gaps = 2/264 (0%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F  +   Y+ L+D + K +  ++A ++L +M  NG  P IVT   L+  Y++ G LD A 
Sbjct: 310 FSHDKVTYNALLDVYGKSHRPKEAMKVLNEMELNGFSPSIVTYNSLISAYARDGMLDEAM 369

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           E    +   G +PD   Y +++  +  AG+ +  M++ + M  +G + +   + A ++ +
Sbjct: 370 ELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMNIFEEMRNAGCKPNICTFNAFIKMY 429

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
              G      +I + + +    P + +   L+  +GQ G   +    F  M R G  P+ 
Sbjct: 430 GNRGKFVDMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPER 489

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               ++I+AY +    ++A+ +   +   G  P  +TY  ++  L R  +  ++E++L +
Sbjct: 490 ETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAE 549

Query: 493 ISELGEAPPFKIQ-VSLCDMYARA 515
           + E G   P ++   SL   YA  
Sbjct: 550 M-EDGRCKPNELTYCSLLHAYANG 572



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/313 (23%), Positives = 137/313 (43%), Gaps = 2/313 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  ++  I  +       D  +I  ++N  G+ PDIVT   L+ ++ + G        F
Sbjct: 418 NICTFNAFIKMYGNRGKFVDMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVF 477

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + ++  GF P+++ +N++I AY   G  +  M++   M+ +G+      Y  +L + A+ 
Sbjct: 478 KEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARG 537

Query: 376 GDVRGAGQITNIMRIEEFQPT-LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
           G    + ++   M     +P  L  C+LL  AY    +     S  + +     +P    
Sbjct: 538 GMWEQSEKVLAEMEDGRCKPNELTYCSLL-HAYANGKEIGLMHSLAEEVYSGVIEPRAVL 596

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
             +++    K +LL +A     EL++ GF P   T   +V   GR Q++ +A ++L  + 
Sbjct: 597 LKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVGKANEVLDYMK 656

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQ 554
           E G  P      SL  M++R+    K+ + L  + AK  +     +  +I        ++
Sbjct: 657 ERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMR 716

Query: 555 DAQRVHGLMEAQG 567
           DA R+   M   G
Sbjct: 717 DASRIFSEMRDSG 729



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 104/230 (45%), Gaps = 5/230 (2%)

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           +++ M  K G +  A   F  L+  GF  D   Y S+I A+ N+G+ +  +++   M   
Sbjct: 178 IVISMLGKEGRVSSAANLFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEE 237

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNI---MRIEEFQPTLESCTLLVEAYGQAGDP 413
           G + +   Y  +L  F + G      +IT++   M+ +   P   +   L+    +    
Sbjct: 238 GCKPTLITYNVILNVFGKMGT--PWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLH 295

Query: 414 DQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVL 473
            +A   F+ M   G   D     +++  YGK +   +A+ +L E+E +GF P   TY  L
Sbjct: 296 QEAAQVFEEMKAAGFSHDKVTYNALLDVYGKSHRPKEAMKVLNEMELNGFSPSIVTYNSL 355

Query: 474 VDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
           +    R  +++EA +L  +++E G  P      +L   + RAG  + A+ 
Sbjct: 356 ISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMN 405



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 63/336 (18%), Positives = 144/336 (42%), Gaps = 14/336 (4%)

Query: 218 LQPSRIDWINLL-----DRLREQNTQLY--FKVAELVLSEESFQTNVRDYSKLIDAHAKE 270
           L P  + W  LL     + +  + + ++   K A  V   E+F T       LI A+++ 
Sbjct: 450 LSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNT-------LISAYSRC 502

Query: 271 NCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVY 330
              E A  + ++M + G+ PD+ T   ++   ++ G  +++++    +     +P++  Y
Sbjct: 503 GSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTY 562

Query: 331 NSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRI 390
            S++ AY N  +  L  SL + + +  IE    +   L+   ++C  +  A +  + ++ 
Sbjct: 563 CSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKE 622

Query: 391 EEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDK 450
             F P + +   +V  YG+     +A    DYM   G  P      S++  + +     K
Sbjct: 623 RGFSPDITTLNSMVSIYGRRQMVGKANEVLDYMKERGFTPSMATYNSLMYMHSRSADFGK 682

Query: 451 ALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCD 510
           +  +L E+   G +P   +Y  ++    R   + +A ++  ++ + G  P      +   
Sbjct: 683 SEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRDSGIVPDVITYNTFIG 742

Query: 511 MYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
            YA   + ++A+  + ++     +   + +  I++G
Sbjct: 743 SYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDG 778



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 99/242 (40%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  L+ A+A    +     + +++    I P  V    LV + SK   L  A+ AF  L+
Sbjct: 562 YCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELK 621

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             GF PD    NSM+  Y           ++D M   G   S   Y +L+   ++  D  
Sbjct: 622 ERGFSPDITTLNSMVSIYGRRQMVGKANEVLDYMKERGFTPSMATYNSLMYMHSRSADFG 681

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            + +I   +  +  +P + S   ++ AY +      A   F  M   G  PD     + I
Sbjct: 682 KSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRDSGIVPDVITYNTFI 741

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            +Y   ++ ++A+ ++  + K G  P   TY  +VD   +L   +EA+  +  +  L   
Sbjct: 742 GSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAKLFVEDLRNLDPH 801

Query: 500 PP 501
            P
Sbjct: 802 AP 803



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/170 (21%), Positives = 73/170 (42%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L E  F  ++   + ++  + +   +  A  +L  M E G  P + T   L++M+S++ +
Sbjct: 620 LKERGFSPDITTLNSMVSIYGRRQMVGKANEVLDYMKERGFTPSMATYNSLMYMHSRSAD 679

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
             +++E    + + G +PD   YN++I AY    + +    +   M  SGI      Y  
Sbjct: 680 FGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRDSGIVPDVITYNT 739

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
            + S+A       A  +   M     +P   +   +V+ Y +    D+A+
Sbjct: 740 FIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAK 789


>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 822

 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 136/304 (44%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV+ Y+ LI   ++   LE A  +  KM + G+VP+ VT   L++     G    A + F
Sbjct: 337 NVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIF 396

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +  HG   + + YN +I      G  +  M L + M+  G   +   Y  L+  +   
Sbjct: 397 HWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTK 456

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G+V  A ++ ++M+    +P   +   LV  + + G  + A   F  M+  G  P+    
Sbjct: 457 GNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSY 516

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I  + K   +D AL+LL  +E+ G  P   +Y  +++ L +    +EAE++  K+ E
Sbjct: 517 TALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVE 576

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
            G  P      +L D   R G  + A +    +E +K       +  +I GL   G   +
Sbjct: 577 QGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADE 636

Query: 556 AQRV 559
           A+R+
Sbjct: 637 AERM 640



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 144/323 (44%), Gaps = 4/323 (1%)

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           V  Y+ LI+ +  +  + +A R+L  M ENG  PD  T   LV  +SK G L+ A   F+
Sbjct: 443 VVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQ 502

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
            +   G  P+   Y ++I  +   G+  + +SL+  M   G   + E Y A++   ++  
Sbjct: 503 EMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKEN 562

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
               A +I + M  +   P + + T L++   + G    A   F  M +    P+    +
Sbjct: 563 RFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYS 622

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
           S+I    ++   D+A      + + G EP   TY+ LV  L R     EAEQL+  + E 
Sbjct: 623 SLIYGLCQEGKADEAE----RMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKER 678

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDA 556
           G  P  +I  SL   + +      AL+    +EAK  Q+    +  +I  L   G +++A
Sbjct: 679 GFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEA 738

Query: 557 QRVHGLMEAQGFAASERLKVALI 579
           Q +   M  + + A E +   L+
Sbjct: 739 QALFDNMLEKEWNADEIVWTVLV 761



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 85/373 (22%), Positives = 158/373 (42%), Gaps = 2/373 (0%)

Query: 218 LQPSRIDWINL-LDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L P    + +L L   R +N  L F V + ++ +E    N   YS LI+    E  +++A
Sbjct: 229 LSPDVFTYTSLILGHCRNRNLDLAFGVFDRMV-KEGCDPNSVTYSTLINGLCNEGRVDEA 287

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
             +L++M E GI P + T T+ +       + + A E    ++  G +P+ + Y ++I  
Sbjct: 288 LDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISG 347

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
               G+ ++ + L   M+  G+  +   Y AL+      G    A +I + M        
Sbjct: 348 LSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLAN 407

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
            ++   +++     GD ++A   F+ M+++G  P      ++I  Y  K  ++ A  LL 
Sbjct: 408 TQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLD 467

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
            ++++G EP   TY  LV    +   +  A     ++ E G  P      +L D +++ G
Sbjct: 468 LMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDG 527

Query: 517 IEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKV 576
               AL  L  +E        + +  +INGL       +A+++   M  QG   +     
Sbjct: 528 KVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYT 587

Query: 577 ALISSQTFNRQRQ 589
            LI     N + Q
Sbjct: 588 TLIDGLCRNGRTQ 600



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/345 (22%), Positives = 146/345 (42%), Gaps = 10/345 (2%)

Query: 242 KVAELV--LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLV 299
           +VA+ +  +S   F  ++   + L+   AK   +E A  + K+M  +GI P ++T   L+
Sbjct: 146 RVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLI 205

Query: 300 HMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
           ++ SK G +  A+     +  +   PD   Y S+I+ +       L   + D M+  G +
Sbjct: 206 NILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCD 265

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
            +   Y  L+      G V  A  +   M  +  +PT+ + TL + A       ++A   
Sbjct: 266 PNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIEL 325

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
              M + G +P+ +   ++I+   +   L+ A+ L  ++ K+G  P   TY  L++ L  
Sbjct: 326 VARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCV 385

Query: 480 LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP-- 537
               + A ++   +   G     +    +       G  +KA+     L  K  +MGP  
Sbjct: 386 GGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAM----VLFEKMLKMGPLP 441

Query: 538 --DDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
               +  +ING L  G + +A R+  LM+  G    E     L+S
Sbjct: 442 TVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVS 486



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 118/275 (42%), Gaps = 31/275 (11%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ +I+  +KEN   +AE+I  KM E G++P+++T T L+    + G    A + F
Sbjct: 547 NVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIF 606

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAG-------------QPKL--------GMS------ 348
             +      P+   Y+S+I      G             +P L        G+       
Sbjct: 607 HDMEKRKCLPNLYTYSSLIYGLCQEGKADEAERMSEIGCEPTLDTYSTLVSGLCRKGRFY 666

Query: 349 ----LVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
               LV  M   G     EIY +LL +  +  +V  A +I + +  + FQ  L     L+
Sbjct: 667 EAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALI 726

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
            A  +AG  ++A++ FD M+      D+     ++    K+  LD  + LL  +E   F 
Sbjct: 727 CALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFT 786

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
           P   TY +L   L R+    E+E L  K+  L ++
Sbjct: 787 PNIQTYVILGRELSRIGKSIESEPLADKLKVLKDS 821



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 77/158 (48%), Gaps = 4/158 (2%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPD--IVTSTVLVHMYSKA 305
           +SE   +  +  YS L+    ++    +AE+++K M E G  PD  I  S ++ H   K 
Sbjct: 640 MSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAH--CKN 697

Query: 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
             +D A + F S+ + GFQ    +Y ++I A   AGQ +   +L D M+       E ++
Sbjct: 698 LEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVW 757

Query: 366 LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403
             L+    + G++    ++ +IM  + F P +++  +L
Sbjct: 758 TVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTYVIL 795


>gi|297833514|ref|XP_002884639.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330479|gb|EFH60898.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 864

 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/330 (22%), Positives = 146/330 (44%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ LID   ++  +E+A  + +KM ++GI P ++T   L++ Y K G +  A E  
Sbjct: 335 NVHTYTVLIDGLCRDGKIEEANGVCRKMVKDGIFPSVITYNALINGYCKDGRVVPAFELL 394

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +     +P+ + +N ++      G+P   + L+  M+ +G+      Y  L+    + 
Sbjct: 395 TVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCRE 454

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A ++   M   + +P   + T ++ A+ + G  D A +    M+R G   D+   
Sbjct: 455 GHMNVAYKLLTSMNSFDLEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTG 514

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I           AL +L  L K      P +  V++D L +   + E   +LGKI++
Sbjct: 515 TTLIDGVCNVGKTRDALFILETLVKMRMLTTPHSLNVILDMLSKGCKLKEELAMLGKINK 574

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
           LG  P      +L D   R+G    + + L  ++          +  IINGL   G +++
Sbjct: 575 LGLVPSVVTYTTLVDGLIRSGDISGSFRMLELMKLSGCLPNVYPYTIIINGLCQFGRVEE 634

Query: 556 AQRVHGLMEAQGFAASERLKVALISSQTFN 585
           A+++   M+  G + +      ++     N
Sbjct: 635 AEKLLSAMQDSGVSPNHVTYTVMVKGYVNN 664



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 63/308 (20%), Positives = 136/308 (44%), Gaps = 4/308 (1%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           V+ + + + NVR +++L++   +      A  +LK+M +NG+ PDIV+  VL+    + G
Sbjct: 396 VMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREG 455

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           +++ A +   S+ S   +PD   + ++I A+   G+  +  + + +M+  GI   E    
Sbjct: 456 HMNVAYKLLTSMNSFDLEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGT 515

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+      G  R A  I   +       T  S  ++++   +     +  +    + +L
Sbjct: 516 TLIDGVCNVGKTRDALFILETLVKMRMLTTPHSLNVILDMLSKGCKLKEELAMLGKINKL 575

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G  P      +++    +   +  +  +L  ++  G  P    YT++++ L +   + EA
Sbjct: 576 GLVPSVVTYTTLVDGLIRSGDISGSFRMLELMKLSGCLPNVYPYTIIINGLCQFGRVEEA 635

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
           E+LL  + + G +P       +   Y   G   +AL+ +  +  +  ++     +RI + 
Sbjct: 636 EKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVERGYELN----DRIYSS 691

Query: 547 LLAGGFLQ 554
           LL G  L 
Sbjct: 692 LLRGFVLS 699



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 81/344 (23%), Positives = 138/344 (40%)

Query: 228 LLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENG 287
           LL   R  N +   KV +L+  E +   N   YS LI    +   LE+A  +  +M E G
Sbjct: 237 LLGFCRGLNLRDALKVFDLMSREGTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKG 296

Query: 288 IVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGM 347
             P   T TVL+      G +D+A   F+ + + G +P+   Y  +I      G+ +   
Sbjct: 297 CQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEEAN 356

Query: 348 SLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAY 407
            +   M+  GI  S   Y AL+  + + G V  A ++  +M     +P + +   L+E  
Sbjct: 357 GVCRKMVKDGIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGL 416

Query: 408 GQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGP 467
            + G P +A      M+  G  PD      +I    ++  ++ A  LL  +     EP  
Sbjct: 417 CRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPDC 476

Query: 468 ATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGF 527
            T+T +++   +    + A   LG +   G +       +L D     G  + AL  L  
Sbjct: 477 LTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCNVGKTRDALFILET 536

Query: 528 LEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAAS 571
           L   +    P     I++ L  G  L++   + G +   G   S
Sbjct: 537 LVKMRMLTTPHSLNVILDMLSKGCKLKEELAMLGKINKLGLVPS 580



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/230 (21%), Positives = 106/230 (46%), Gaps = 12/230 (5%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ L+D   +   +  + R+L+ M  +G +P++   T++++   + G ++ A++  
Sbjct: 580 SVVTYTTLVDGLIRSGDISGSFRMLELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLL 639

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
            +++  G  P+   Y  M+  YVN G+    +  V  M+  G E ++ IY +LLR F   
Sbjct: 640 SAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLRGFVL- 698

Query: 376 GDVRGAGQITNIMRIEEFQPTLES--------CTLLVEAYGQAGDPDQARSNFDYMIRLG 427
              +G  + T+   I+E    +E         C  LV    + G  D++      +++ G
Sbjct: 699 -SQKGIRE-TDPECIKELISVVEQLGGSTSGLCIFLVTRLCKEGRTDESNGLVQTILKSG 756

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
               ++    ++ +Y  K    K + L+  + K GF P   ++ +++  L
Sbjct: 757 VFL-EKAIDIIMESYCSKKKHTKCVELITLVLKSGFVPSFKSFCLVIQGL 805


>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
 gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
          Length = 616

 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 167/365 (45%), Gaps = 26/365 (7%)

Query: 219 QPSRIDWINLLDRL---REQNTQL----YFKVAELVLSEESFQTNVRDYSKLIDAHAKEN 271
           QP  + +  ++D L   R  N  L    Y K        +    N+  Y+ LI      +
Sbjct: 259 QPDVVTYSTIIDSLCKDRRVNEALDIFSYMKA-------KGISPNIFTYNSLIQGLCNFS 311

Query: 272 CLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYN 331
              +A  +L +M    I+P+IVT ++L++++ K GN+  A+   +++   G +P+   Y+
Sbjct: 312 RWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYS 371

Query: 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391
           S++  Y    +      L D+MIT G +     Y  L+  + +   +  A Q+ N M  +
Sbjct: 372 SLMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQ 431

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIA-AYGKKNLLDK 450
              P + S   L++   Q G   +A   F  M+  G+ P D CT S++   + K+  L K
Sbjct: 432 GLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLP-DLCTYSILLDGFCKQGYLAK 490

Query: 451 ALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCD 510
           A  L   ++    +P    Y +L+D + + + + EA +L  ++   G  P  +I  ++ +
Sbjct: 491 AFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIYTTIIN 550

Query: 511 MYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD-----AQRVHGLMEA 565
              + G+  +AL+A  F   +++   P++F      ++  GFLQ      A ++ G M  
Sbjct: 551 GLCKEGLLDEALEA--FRNMEEDGCPPNEFSY---NVIIRGFLQHKDESRAVQLIGEMRE 605

Query: 566 QGFAA 570
           +GF A
Sbjct: 606 KGFVA 610



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/328 (22%), Positives = 145/328 (44%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           +Q +V  Y+ +I+   K      A  + +KM E G  PD+VT + ++    K   ++ A 
Sbjct: 223 YQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEAL 282

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           + F  +++ G  P+   YNS+I    N  + +   ++++ M++  I  +   +  L+  F
Sbjct: 283 DIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIF 342

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + G+V  A  +   M     +P + + + L+  Y    +  +AR  FD MI  G KPD 
Sbjct: 343 CKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPDV 402

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
                +I  Y K   + +A  L  E+   G  P   +Y  L+D L +L  + EA  L   
Sbjct: 403 FSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKN 462

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
           +   G  P       L D + + G   KA +    +++   +     +  +I+ +     
Sbjct: 463 MLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRN 522

Query: 553 LQDAQRVHGLMEAQGFAASERLKVALIS 580
           L++A+++   +  QG   + ++   +I+
Sbjct: 523 LKEARKLFSELFVQGLQPNVQIYTTIIN 550



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 73/325 (22%), Positives = 134/325 (41%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E   Q +V  YS +ID+  K+  + +A  I   M   GI P+I T   L+        
Sbjct: 253 MGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSR 312

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
              A      + S    P+   ++ +I  +   G       ++  M   G+E +   Y +
Sbjct: 313 WREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSS 372

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+  ++   +V  A ++ ++M  +  +P + S  +L+  Y +A    +A+  F+ MI  G
Sbjct: 373 LMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQG 432

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD     ++I    +   L +A +L   +  +G  P   TY++L+D   +   + +A 
Sbjct: 433 LTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAF 492

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
           +L   +      P   +   L D   ++   K+A +    L  +  Q     +  IINGL
Sbjct: 493 RLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGL 552

Query: 548 LAGGFLQDAQRVHGLMEAQGFAASE 572
              G L +A      ME  G   +E
Sbjct: 553 CKEGLLDEALEAFRNMEEDGCPPNE 577


>gi|357111163|ref|XP_003557384.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Brachypodium distachyon]
          Length = 821

 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 124/271 (45%), Gaps = 2/271 (0%)

Query: 283 MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQ--PDKKVYNSMIMAYVNA 340
           M    I PD  T  +++H   K G    A E   S+R    Q  PD   Y S++ +Y   
Sbjct: 286 MKGANIAPDTFTLNIVIHCLVKDGQYGEAIELLNSMREKRTQCPPDVVTYTSIMHSYYVC 345

Query: 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
           G+ +   ++ DMM+  G++ +   Y ALL ++A  G    A  I  +++    +P + S 
Sbjct: 346 GKVEDCKAVFDMMVAEGVKPNIVSYNALLGAYASRGMHADALGIFKLLKQNGLRPDVVSY 405

Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
           T L+ AYG++G P++AR  F  M +   +P+     ++I AYG   +  +A++LL E+EK
Sbjct: 406 TTLLNAYGRSGQPEKAREAFKEMRKNSCRPNIVSYNALIDAYGSAGMFKEAISLLHEMEK 465

Query: 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKK 520
           DG  P   + + L+   GR + I + + +L      G         S    Y   G   K
Sbjct: 466 DGIPPDVVSISTLLTACGRCRQITKIDTILEAAKSRGIKLNIVCYNSGIGSYLNFGDYGK 525

Query: 521 ALQALGFLEAKKEQMGPDDFERIINGLLAGG 551
           AL+    + A         +  +I+GL   G
Sbjct: 526 ALELYAVMMASNVNPDAVTYNILISGLCKVG 556



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 71/306 (23%), Positives = 133/306 (43%), Gaps = 56/306 (18%)

Query: 226 INLLDRLREQNTQL-------------YFKVAEL--------VLSEESFQTNVRDYSKLI 264
           I LL+ +RE+ TQ              Y+   ++        ++  E  + N+  Y+ L+
Sbjct: 315 IELLNSMREKRTQCPPDVVTYTSIMHSYYVCGKVEDCKAVFDMMVAEGVKPNIVSYNALL 374

Query: 265 DAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQ 324
            A+A      DA  I K + +NG+ PD+V+ T L++ Y ++G  ++A+EAF+ +R +  +
Sbjct: 375 GAYASRGMHADALGIFKLLKQNGLRPDVVSYTTLLNAYGRSGQPEKAREAFKEMRKNSCR 434

Query: 325 PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE--------------RSEEI------ 364
           P+   YN++I AY +AG  K  +SL+  M   GI               R  +I      
Sbjct: 435 PNIVSYNALIDAYGSAGMFKEAISLLHEMEKDGIPPDVVSISTLLTACGRCRQITKIDTI 494

Query: 365 ---------------YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409
                          Y + + S+   GD   A ++  +M      P   +  +L+    +
Sbjct: 495 LEAAKSRGIKLNIVCYNSGIGSYLNFGDYGKALELYAVMMASNVNPDAVTYNILISGLCK 554

Query: 410 AGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPAT 469
            G   ++   F+ M+ L         +S+I +Y K+  L +A +    +++ G  P   T
Sbjct: 555 VGKYAESLKFFEDMVDLRIPLTKEVYSSLICSYVKQGKLTEAESTFSSMKESGCLPDVLT 614

Query: 470 YTVLVD 475
           YT +++
Sbjct: 615 YTAMIE 620



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 78/372 (20%), Positives = 155/372 (41%), Gaps = 43/372 (11%)

Query: 249 SEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK---- 304
           ++E++      Y  +I  HA+ + ++ A  +  +M E    PD      L+H +++    
Sbjct: 147 NQENYCARNDIYGMMIRLHARHSQIDQARGLFFEMQEWRCKPDADIYNSLIHAHARAGQW 206

Query: 305 -------------------------------AGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
                                          AGN  +A E  + +  +G  PD   +N +
Sbjct: 207 RWAINIMDDMLRAAIPPSRTTYNNVINACGAAGNWKKALELCKKMTRNGVGPDLVTHNIV 266

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           + A+ N  Q    ++  +MM  + I         ++    + G    A ++ N MR +  
Sbjct: 267 LSAFKNGSQYSKAIAYFEMMKGANIAPDTFTLNIVIHCLVKDGQYGEAIELLNSMREKRT 326

Query: 394 Q--PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
           Q  P + + T ++ +Y   G  +  ++ FD M+  G KP+     +++ AY  + +   A
Sbjct: 327 QCPPDVVTYTSIMHSYYVCGKVEDCKAVFDMMVAEGVKPNIVSYNALLGAYASRGMHADA 386

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
           L +   L+++G  P   +YT L++  GR     +A +   ++ +    P      +L D 
Sbjct: 387 LGIFKLLKQNGLRPDVVSYTTLLNAYGRSGQPEKAREAFKEMRKNSCRPNIVSYNALIDA 446

Query: 512 YARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAAS 571
           Y  AG+ K+A+  L   E +K+ + P D   I   L A G  +   ++  ++EA   A S
Sbjct: 447 YGSAGMFKEAISLLH--EMEKDGI-PPDVVSISTLLTACGRCRQITKIDTILEA---AKS 500

Query: 572 ERLKVALISSQT 583
             +K+ ++   +
Sbjct: 501 RGIKLNIVCYNS 512



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 116/251 (46%), Gaps = 24/251 (9%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS LI ++ K+  L +AE     M E+G +PD++T T ++  Y+  G+   A + F+ + 
Sbjct: 580 YSSLICSYVKQGKLTEAESTFSSMKESGCLPDVLTYTAMIEAYNDDGSWRNAWDLFKEME 639

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
            +  QPD  + +S++ A     Q +  + L+++M    I  +++ Y  ++ S +   D +
Sbjct: 640 GNTVQPDAIICSSLMEALNRGSQHERVLQLMELMKEKCIPLNQKAYFEIIASCSMLRDWK 699

Query: 380 GAGQITNIMRIEEFQPTLESCTL-----LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
            A +I     IE    +L S ++     L+   G+ G  +        M++L +K    C
Sbjct: 700 TASEI-----IEHLDSSLSSISVGTLNHLLTFLGKCGKTEC-------MMKLFYKMMSSC 747

Query: 435 TASMIAAYGK--KNLLD-----KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
           +   ++ Y    +NLL      K + +L  +E  G  P    Y  ++ ++ R   ++   
Sbjct: 748 STVGVSTYTVLLRNLLAVGKWRKYIEVLQWMEDAGVSPTLYMYQNVLPYIWRDNSMDYVT 807

Query: 488 QLLGKISELGE 498
            +  KI+ L E
Sbjct: 808 LMQEKINSLRE 818



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/284 (20%), Positives = 118/284 (41%), Gaps = 5/284 (1%)

Query: 258 RDYSKLIDAHAKENCLEDAERILKKM-NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           R++  LI        L+ A  + + M N+           +++ ++++   +D+A+  F 
Sbjct: 120 RNFPLLIREITFAGSLQHAVHVFRWMKNQENYCARNDIYGMMIRLHARHSQIDQARGLFF 179

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
            ++    +PD  +YNS+I A+  AGQ +  ++++D M+ + I  S   Y  ++ +    G
Sbjct: 180 EMQEWRCKPDADIYNSLIHAHARAGQWRWAINIMDDMLRAAIPPSRTTYNNVINACGAAG 239

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
           + + A ++   M      P L +  +++ A+       +A + F+ M      PD     
Sbjct: 240 NWKKALELCKKMTRNGVGPDLVTHNIVLSAFKNGSQYSKAIAYFEMMKGANIAPDTFTLN 299

Query: 437 SMIAAYGKKNLLDKALNLLLEL--EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
            +I    K     +A+ LL  +  ++    P   TYT ++        + + + +   + 
Sbjct: 300 IVIHCLVKDGQYGEAIELLNSMREKRTQCPPDVVTYTSIMHSYYVCGKVEDCKAVFDMMV 359

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
             G  P      +L   YA  G+   AL     L  K+  + PD
Sbjct: 360 AEGVKPNIVSYNALLGAYASRGMHADALGIFKLL--KQNGLRPD 401


>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
          Length = 817

 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 142/320 (44%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI  ++     ++A R+ K+M  + I+PD+VT ++L+    K G +  A++ F+++ 
Sbjct: 295 YNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMA 354

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  PD   YN M+  Y   G       L D+M+  GI      +  L++++A CG + 
Sbjct: 355 MKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLD 414

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  I N MR    +P + +   ++ A  + G  D A   F+ MI  G  PD      +I
Sbjct: 415 KAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLI 474

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             +     L KA  L+ E+  +G       ++ +++ L +L  + +A+ +      +G  
Sbjct: 475 QGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLH 534

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P   +   L D Y   G  +KAL+    + +   +     +  ++NG    G + +   +
Sbjct: 535 PDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSL 594

Query: 560 HGLMEAQGFAASERLKVALI 579
              M  +G   S  L   +I
Sbjct: 595 FREMLQRGIKPSTILYSIII 614



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++ LI A+A    L+ A  I  +M ++G+ PD+VT   ++    + G +D A E F  + 
Sbjct: 400 FNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMI 459

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  PDK  YN +I  +   G       L+  ++ +G+      + +++ +  + G V 
Sbjct: 460 DQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVM 519

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  I ++       P      +L++ Y   G  ++A   FD M+  G +P+     +++
Sbjct: 520 DAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLV 579

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
             Y K   +D+ L+L  E+ + G +P    Y++++D L
Sbjct: 580 NGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGL 617



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 109/245 (44%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ +++ +A + CL D   +   M  +GI PD  T  VL+  Y+  G LD+A   F
Sbjct: 361 DVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIF 420

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +R HG +PD   Y ++I A    G+    M   + MI  G+   +  Y  L++ F   
Sbjct: 421 NEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTH 480

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A ++ + +        +   + ++    + G    A++ FD  + +G  PD    
Sbjct: 481 GSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVY 540

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             ++  Y     ++KAL +   +   G EP    Y  LV+   ++  I+E   L  ++ +
Sbjct: 541 NMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQ 600

Query: 496 LGEAP 500
            G  P
Sbjct: 601 RGIKP 605



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 139/350 (39%), Gaps = 37/350 (10%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIV--PDIVTSTVLVHMYSKAGNLDRAKE 313
           +V  YS L+ +   +     A+ +L+ M E G V  P++V    ++  + K G++++A +
Sbjct: 184 DVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACD 243

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            F+ +   G  PD   YNS++ A   A       + +  M+   +  +   Y  L+  ++
Sbjct: 244 LFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYS 303

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD-- 431
             G  + A ++   MR     P + + ++L+ +  + G   +AR  FD M   G  PD  
Sbjct: 304 STGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVF 363

Query: 432 -----------DRCTASM----------------------IAAYGKKNLLDKALNLLLEL 458
                        C   M                      I AY    +LDKA+ +  E+
Sbjct: 364 SYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEM 423

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
              G +P   TY  ++  L R+  +++A +   ++ + G AP       L   +   G  
Sbjct: 424 RDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSL 483

Query: 519 KKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
            KA + +  +      +    F  IIN L   G + DAQ +  L    G 
Sbjct: 484 LKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGL 533



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 106/236 (44%), Gaps = 2/236 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI        L  A+ ++ ++  NG+  DIV  + +++   K G +  A+  F+   
Sbjct: 470 YNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTV 529

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G  PD  VYN ++  Y   G+ +  + + D M+++GIE +   Y  L+  + + G + 
Sbjct: 530 NVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRID 589

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
               +   M     +P+    +++++   +AG    A+  F  M   G    D CT +++
Sbjct: 590 EGLSLFREMLQRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTESGIAM-DICTYNIV 648

Query: 440 A-AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
                K    D+A+ L  EL     +    T   ++D + + + + EA+ L   IS
Sbjct: 649 LRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASIS 704



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 106/278 (38%), Gaps = 36/278 (12%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+D +     +E A R+   M   GI P++V    LV+ Y K G +D     F  + 
Sbjct: 540 YNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREML 599

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF--AQCGD 377
             G +P   +Y+ +I     AG+          M  SGI      Y  +LR     +C D
Sbjct: 600 QRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFD 659

Query: 378 --------VRGAGQITNIM-------------RIEE------------FQPTLESCTLLV 404
                   +R      NI+             R+EE              P++ + ++++
Sbjct: 660 EAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIMI 719

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
               + G  ++A   F  M   G +P+ R    ++    KKN + +A   L ++++  F 
Sbjct: 720 TNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFS 779

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLL-GKISELGEAPP 501
               T  +LVD         E  + L  K   L EA P
Sbjct: 780 LEHLTAMLLVDLFSSKGTCREQIRFLPAKYHFLAEASP 817



 Score = 44.3 bits (103), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 43/207 (20%), Positives = 92/207 (44%), Gaps = 8/207 (3%)

Query: 211 LAEWKELLQ----PSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDA 266
           L+ ++E+LQ    PS I +  ++D L E    +  K+    ++E     ++  Y+ ++  
Sbjct: 592 LSLFREMLQRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTESGIAMDICTYNIVLRG 651

Query: 267 HAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPD 326
             K  C ++A  + K++    +  +I+T   ++    +   ++ AK+ F S+      P 
Sbjct: 652 LFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPS 711

Query: 327 KKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITN 386
              Y+ MI   +  G  +    +   M  +G E +  +   ++R   +  ++  AG   +
Sbjct: 712 VVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAGAYLS 771

Query: 387 IMRIEEFQPTLESCT--LLVEAYGQAG 411
             +I+E   +LE  T  LLV+ +   G
Sbjct: 772 --KIDERNFSLEHLTAMLLVDLFSSKG 796


>gi|357166784|ref|XP_003580849.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like [Brachypodium distachyon]
          Length = 904

 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 120/239 (50%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
            V  Y+ LI    K+N +E A  +L KM+  GI P+  T T+++  Y+  G++ +A E F
Sbjct: 583 TVMTYNALIHGLIKKNQVERAVSVLNKMSIAGITPNEHTYTIIMRGYAANGDIGKAFEYF 642

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             ++  G + D  +Y +++ A   +G+ +  +++   M T  I R+  +Y  L+  +A+ 
Sbjct: 643 TKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSTQKIARNTFVYNILIDGWARR 702

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           GDV  A  +   M+ +   P + + T  + A  +AGD  +A+   + M  +G KP+ +  
Sbjct: 703 GDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQKVIEEMADVGLKPNLKTY 762

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
            ++I  + K +L D+AL    E++  G +P  A Y  LV  L     + E     G +S
Sbjct: 763 TTLIKGWAKASLPDRALKSFEEMKLAGLKPDEAAYHCLVTSLLSRATVMEGSTYTGILS 821



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/371 (21%), Positives = 159/371 (42%), Gaps = 47/371 (12%)

Query: 238 QLYFKVAE----LVLSEE----SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIV 289
            LY K+ +    + +S+E      + N + YS LI      +   +A  I ++M ++G+ 
Sbjct: 452 NLYIKIGKVTKAIAISKEMESYGIKHNNKTYSMLISGFIHLHDFANAFSIFEEMLKSGLQ 511

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL 349
           PD     +L+  + K GN+DRA    E ++    QP  + +  +I  +  AG  K  +++
Sbjct: 512 PDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFAVAGDMKRALNI 571

Query: 350 VDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409
           +D+M  SG   +   Y AL+    +   V  A  + N M I    P   + T+++  Y  
Sbjct: 572 LDLMRRSGCAPTVMTYNALIHGLIKKNQVERAVSVLNKMSIAGITPNEHTYTIIMRGYAA 631

Query: 410 AGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL----------------- 452
            GD  +A   F  +   G K D     +++ A  K   +  AL                 
Sbjct: 632 NGDIGKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSTQKIARNTFV 691

Query: 453 ------------------NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
                             +L+ ++++DG  P   TYT  ++   +   +  A++++ +++
Sbjct: 692 YNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQKVIEEMA 751

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGF 552
           ++G  P  K   +L   +A+A +  +AL++  F E K   + PD+  +  ++  LL+   
Sbjct: 752 DVGLKPNLKTYTTLIKGWAKASLPDRALKS--FEEMKLAGLKPDEAAYHCLVTSLLSRAT 809

Query: 553 LQDAQRVHGLM 563
           + +     G++
Sbjct: 810 VMEGSTYTGIL 820



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 136/300 (45%), Gaps = 39/300 (13%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGI------------------------------- 288
           YS +I AH +   ++ AE ++++M E+GI                               
Sbjct: 377 YSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVFERLK 436

Query: 289 ----VPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPK 344
                P I++   L+++Y K G + +A    + + S+G + + K Y+ +I  +++     
Sbjct: 437 ECCFTPSIISYGCLINLYIKIGKVTKAIAISKEMESYGIKHNNKTYSMLISGFIHLHDFA 496

Query: 345 LGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
              S+ + M+ SG++    IY  L+ +F + G++  A +I   M+ E  QP+  +   ++
Sbjct: 497 NAFSIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPII 556

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
           E +  AGD  +A +  D M R G  P      ++I    KKN +++A+++L ++   G  
Sbjct: 557 EGFAVAGDMKRALNILDLMRRSGCAPTVMTYNALIHGLIKKNQVERAVSVLNKMSIAGIT 616

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQA 524
           P   TYT+++        I +A +   KI E G     K+ V + +   RA  +   +Q+
Sbjct: 617 PNEHTYTIIMRGYAANGDIGKAFEYFTKIKEGG----LKLDVYIYETLLRACCKSGRMQS 672



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 74/335 (22%), Positives = 138/335 (41%), Gaps = 6/335 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L E  F  ++  Y  LI+ + K   +  A  I K+M   GI  +  T ++L+  +    +
Sbjct: 435 LKECCFTPSIISYGCLINLYIKIGKVTKAIAISKEMESYGIKHNNKTYSMLISGFIHLHD 494

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
              A   FE +   G QPD+ +YN +I A+   G     + +++ M    ++ S   +  
Sbjct: 495 FANAFSIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRP 554

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++  FA  GD++ A  I ++MR     PT+ +   L+    +    ++A S  + M   G
Sbjct: 555 IIEGFAVAGDMKRALNILDLMRRSGCAPTVMTYNALIHGLIKKNQVERAVSVLNKMSIAG 614

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P++     ++  Y     + KA     ++++ G +     Y  L+    +   +  A 
Sbjct: 615 ITPNEHTYTIIMRGYAANGDIGKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSAL 674

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD---FERII 544
            +  ++S    A    +   L D +AR G      +A   ++  KE   P +   +   I
Sbjct: 675 AVTREMSTQKIARNTFVYNILIDGWARRG---DVWEAADLMKQMKEDGVPPNIHTYTSYI 731

Query: 545 NGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
           N     G +Q AQ+V   M   G   + +    LI
Sbjct: 732 NACCKAGDMQRAQKVIEEMADVGLKPNLKTYTTLI 766



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 69/385 (17%), Positives = 169/385 (43%), Gaps = 4/385 (1%)

Query: 203 KEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSK 262
           + ED   +++ ++ + +PSR ++  ++    ++  + + +     +     + N   ++ 
Sbjct: 250 RPEDWQAVVSAFERIPKPSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTS 309

Query: 263 LIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG 322
           L+ A+A    +      +++M   GI   IVT ++++  ++K  +   A   F+  ++  
Sbjct: 310 LVHAYAVARDMRGVLSCVEEMKAEGIELTIVTYSIIIAGFAKINDAQSADNLFKEAKAKL 369

Query: 323 FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAG 382
              +  +Y+++I A+  +G       LV  M   GI+   + Y +++  +    D +   
Sbjct: 370 GDLNGIIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDAYHSMMHGYTIIQDEKKCL 429

Query: 383 QITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAY 442
            +   ++   F P++ S   L+  Y + G   +A +    M   G K +++  + +I+ +
Sbjct: 430 IVFERLKECCFTPSIISYGCLINLYIKIGKVTKAIAISKEMESYGIKHNNKTYSMLISGF 489

Query: 443 GKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPF 502
              +    A ++  E+ K G +P  A Y +L++   ++  ++ A ++L K+ +    P  
Sbjct: 490 IHLHDFANAFSIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSN 549

Query: 503 KIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVH 560
           +    + + +A AG  K+AL  L  +  ++    P    +  +I+GL+    ++ A  V 
Sbjct: 550 RAFRPIIEGFAVAGDMKRALNILDLM--RRSGCAPTVMTYNALIHGLIKKNQVERAVSVL 607

Query: 561 GLMEAQGFAASERLKVALISSQTFN 585
             M   G   +E     ++     N
Sbjct: 608 NKMSIAGITPNEHTYTIIMRGYAAN 632



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 70/143 (48%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +S +    N   Y+ LID  A+   + +A  ++K+M E+G+ P+I T T  ++   KAG+
Sbjct: 680 MSTQKIARNTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGD 739

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           + RA++  E +   G +P+ K Y ++I  +  A  P   +   + M  +G++  E  Y  
Sbjct: 740 MQRAQKVIEEMADVGLKPNLKTYTTLIKGWAKASLPDRALKSFEEMKLAGLKPDEAAYHC 799

Query: 368 LLRSFAQCGDVRGAGQITNIMRI 390
           L+ S      V      T I+ I
Sbjct: 800 LVTSLLSRATVMEGSTYTGILSI 822


>gi|297743996|emb|CBI36966.3| unnamed protein product [Vitis vinifera]
          Length = 730

 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 124/243 (51%), Gaps = 5/243 (2%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           ++  Y+ L+DA  K   ++ A +I+ +M    I+P++VT + ++  Y+KAG LD A   F
Sbjct: 211 DIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLF 270

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             ++      D+  YN+++  Y   G+ +  +++   M +SGI++    Y ALL  + + 
Sbjct: 271 NEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQ 330

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G      ++   M+ E   P L + + L++ Y + G   +A   F    + G K D    
Sbjct: 331 GKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLY 390

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
           +++I A  K  L++ A++ L E+ K+G  P   TY  ++D  GR  ++ +A +     SE
Sbjct: 391 SALIDALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDAFGRSGIVEDATE-----SE 445

Query: 496 LGE 498
           +G+
Sbjct: 446 VGD 448



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 119/282 (42%), Gaps = 7/282 (2%)

Query: 250 EESFQTNVRDYSKLIDAHAKENC-LEDAERILKKMN------ENGIVPDIVTSTVLVHMY 302
           +   + N+  Y+ +IDA  K       A  I  +MN        GI  DI T   L+   
Sbjct: 163 DSGLKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMNLFSEMLYRGIEQDIFTYNTLLDAV 222

Query: 303 SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE 362
            K G +D A +    +      P+   Y+++I  Y  AG+    ++L + M  + I    
Sbjct: 223 CKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDR 282

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
             Y  LL  +A+ G    A  +   M     +    +   L+  YG+ G  ++ +  F+ 
Sbjct: 283 VSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEE 342

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
           M      P+    +++I  Y K  L  +A+ +  E +K G +     Y+ L+D L +  L
Sbjct: 343 MKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGL 402

Query: 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQA 524
           +  A   L ++++ G  P      S+ D + R+GI + A ++
Sbjct: 403 VESAVSFLDEMTKEGIRPNVVTYNSIIDAFGRSGIVEDATES 444



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 123/288 (42%), Gaps = 11/288 (3%)

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAG-NLDRAKEAFESLR------SHGFQPDKKVY 330
           R L    ++G+ P++VT   ++    K G + +RA E F+ +         G + D   Y
Sbjct: 156 RELGNRGDSGLKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMNLFSEMLYRGIEQDIFTY 215

Query: 331 NSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRI 390
           N+++ A    GQ  L   ++  M    I  +   Y  ++  +A+ G +  A  + N M+ 
Sbjct: 216 NTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKF 275

Query: 391 EEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDK 450
                   S   L+  Y + G  ++A +    M   G K D     +++  YGK+   ++
Sbjct: 276 ASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEE 335

Query: 451 ALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCD 510
              +  E++ +   P   TY+ L+D   +  L  EA ++  +  + G      +  +L D
Sbjct: 336 VKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALID 395

Query: 511 MYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDA 556
              + G+ + A+  L   E  KE + P+   +  II+     G ++DA
Sbjct: 396 ALCKNGLVESAVSFLD--EMTKEGIRPNVVTYNSIIDAFGRSGIVEDA 441


>gi|224092436|ref|XP_002309609.1| predicted protein [Populus trichocarpa]
 gi|222855585|gb|EEE93132.1| predicted protein [Populus trichocarpa]
          Length = 841

 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 143/326 (43%), Gaps = 5/326 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV   + L+  + K+  L+ A  +  KMNENGI P+ VT  V++    K GN+D+A E +
Sbjct: 328 NVVVATTLMKGYCKQGDLDSALELFDKMNENGICPNNVTYAVIIEWCCKNGNMDKAYEIY 387

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +++    P     NS+I  Y+ A  P+    L D  +  GI      Y +LL    + 
Sbjct: 388 NQMKNKDISPTVFNVNSLIRGYLKARSPEEASKLFDEAVACGIANVFT-YNSLLSWLCKE 446

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A  I   M  +  +P++ S   ++  + Q GD D A   F  M+  G KP+    
Sbjct: 447 GKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQQGDMDSANGVFVEMLEKGLKPNLITY 506

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
           + ++  Y KK   + A  L   +  +   P   T  ++++ L +    +E++  L K+ +
Sbjct: 507 SVLMDGYFKKGDTEYAFGLYDRMRGENIAPSDFTCNIIINGLCKAGRTSESQDRLKKLVQ 566

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF--ERIINGLLAGGFL 553
            G  P       + D + + G    AL    + E  K  + P+ F    +ING      +
Sbjct: 567 EGFIPTCMTYNCIIDGFVKEGSVNSALAV--YTEMCKIGVSPNVFTYTNLINGFCKSNNM 624

Query: 554 QDAQRVHGLMEAQGFAASERLKVALI 579
             A +V   M+ +G      +  ALI
Sbjct: 625 DLALKVMDEMKNKGIELDVTVYCALI 650



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/326 (21%), Positives = 141/326 (43%), Gaps = 5/326 (1%)

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           V + + LI  + K    E+A ++  +    GI  ++ T   L+    K G +  A   +E
Sbjct: 399 VFNVNSLIRGYLKARSPEEASKLFDEAVACGIA-NVFTYNSLLSWLCKEGKMSEACSIWE 457

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
            +   G +P    YN+MI+ +   G       +   M+  G++ +   Y  L+  + + G
Sbjct: 458 KMVRKGVRPSVVSYNNMILGHCQQGDMDSANGVFVEMLEKGLKPNLITYSVLMDGYFKKG 517

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
           D   A  + + MR E   P+  +C +++    +AG   +++     +++ G  P      
Sbjct: 518 DTEYAFGLYDRMRGENIAPSDFTCNIIINGLCKAGRTSESQDRLKKLVQEGFIPTCMTYN 577

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
            +I  + K+  ++ AL +  E+ K G  P   TYT L++   +   ++ A +++ ++   
Sbjct: 578 CIIDGFVKEGSVNSALAVYTEMCKIGVSPNVFTYTNLINGFCKSNNMDLALKVMDEMKNK 637

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQ 554
           G      +  +L D + R G    A Q L   E ++  + P+   +  +I+G      ++
Sbjct: 638 GIELDVTVYCALIDGFCRKGDMVNASQLLS--ELQEVGLSPNKVVYSSMISGFRKLQNME 695

Query: 555 DAQRVHGLMEAQGFAASERLKVALIS 580
            A  +H  M  +G     ++   LIS
Sbjct: 696 AALHLHKRMINEGIPCDLQIYTTLIS 721



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 70/329 (21%), Positives = 141/329 (42%), Gaps = 4/329 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ +I  H ++  ++ A  +  +M E G+ P+++T +VL+  Y K G+ + A   +
Sbjct: 467 SVVSYNNMILGHCQQGDMDSANGVFVEMLEKGLKPNLITYSVLMDGYFKKGDTEYAFGLY 526

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + +R     P     N +I     AG+       +  ++  G   +   Y  ++  F + 
Sbjct: 527 DRMRGENIAPSDFTCNIIINGLCKAGRTSESQDRLKKLVQEGFIPTCMTYNCIIDGFVKE 586

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G V  A  +   M      P + + T L+  + ++ + D A    D M   G + D    
Sbjct: 587 GSVNSALAVYTEMCKIGVSPNVFTYTNLINGFCKSNNMDLALKVMDEMKNKGIELDVTVY 646

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I  + +K  +  A  LL EL++ G  P    Y+ ++    +LQ +  A  L  ++  
Sbjct: 647 CALIDGFCRKGDMVNASQLLSELQEVGLSPNKVVYSSMISGFRKLQNMEAALHLHKRMIN 706

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFL 553
            G     +I  +L     + G  K    +  + E   + + PD   +  +I+GL   G L
Sbjct: 707 EGIPCDLQIYTTLISGLLKEG--KLLFASELYAEMLAKGIMPDLITYSVLIHGLCNKGQL 764

Query: 554 QDAQRVHGLMEAQGFAASERLKVALISSQ 582
           ++AQ++   M+ +    +  +   LI+  
Sbjct: 765 ENAQKILEDMDRKCMTPTVFIYNTLITGH 793



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 84/391 (21%), Positives = 164/391 (41%), Gaps = 12/391 (3%)

Query: 201 LEKEEDPSPLLAEWKELLQ----PSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTN 256
           L KE   S   + W+++++    PS + + N++    +Q          + + E+  + N
Sbjct: 443 LCKEGKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQQGDMDSANGVFVEMLEKGLKPN 502

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           +  YS L+D + K+   E A  +  +M    I P   T  ++++   KAG    +++  +
Sbjct: 503 LITYSVLMDGYFKKGDTEYAFGLYDRMRGENIAPSDFTCNIIINGLCKAGRTSESQDRLK 562

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
            L   GF P    YN +I  +V  G     +++   M   G+  +   Y  L+  F +  
Sbjct: 563 KLVQEGFIPTCMTYNCIIDGFVKEGSVNSALAVYTEMCKIGVSPNVFTYTNLINGFCKSN 622

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
           ++  A ++ + M+ +  +  +     L++ + + GD   A      +  +G  P+    +
Sbjct: 623 NMDLALKVMDEMKNKGIELDVTVYCALIDGFCRKGDMVNASQLLSELQEVGLSPNKVVYS 682

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
           SMI+ + K   ++ AL+L   +  +G       YT L+  L +   +  A +L  ++   
Sbjct: 683 SMISGFRKLQNMEAALHLHKRMINEGIPCDLQIYTTLISGLLKEGKLLFASELYAEMLAK 742

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF---- 552
           G  P       L       G  + A + L  ++ K   M P  F  I N L+ G F    
Sbjct: 743 GIMPDLITYSVLIHGLCNKGQLENAQKILEDMDRK--CMTPTVF--IYNTLITGHFKEGN 798

Query: 553 LQDAQRVHGLMEAQGFAASERLKVALISSQT 583
           LQ+A R+H  M  +G    +     L++ + 
Sbjct: 799 LQEAFRLHNEMLDKGLVPDDTTYDILVNGKV 829



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 135/316 (42%), Gaps = 14/316 (4%)

Query: 166 TEVAEKIHER--GEMILPEEPKPITGKCKLITDKILSLEKEEDPSPLLAEWKELLQ---- 219
           TE A  +++R  GE I P +       C +I + +    +  +    L   K+L+Q    
Sbjct: 519 TEYAFGLYDRMRGENIAPSD-----FTCNIIINGLCKAGRTSESQDRL---KKLVQEGFI 570

Query: 220 PSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERI 279
           P+ + +  ++D   ++ +          + +     NV  Y+ LI+   K N ++ A ++
Sbjct: 571 PTCMTYNCIIDGFVKEGSVNSALAVYTEMCKIGVSPNVFTYTNLINGFCKSNNMDLALKV 630

Query: 280 LKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339
           + +M   GI  D+     L+  + + G++  A +    L+  G  P+K VY+SMI  +  
Sbjct: 631 MDEMKNKGIELDVTVYCALIDGFCRKGDMVNASQLLSELQEVGLSPNKVVYSSMISGFRK 690

Query: 340 AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLES 399
               +  + L   MI  GI    +IY  L+    + G +  A ++   M  +   P L +
Sbjct: 691 LQNMEAALHLHKRMINEGIPCDLQIYTTLISGLLKEGKLLFASELYAEMLAKGIMPDLIT 750

Query: 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELE 459
            ++L+      G  + A+   + M R    P      ++I  + K+  L +A  L  E+ 
Sbjct: 751 YSVLIHGLCNKGQLENAQKILEDMDRKCMTPTVFIYNTLITGHFKEGNLQEAFRLHNEML 810

Query: 460 KDGFEPGPATYTVLVD 475
             G  P   TY +LV+
Sbjct: 811 DKGLVPDDTTYDILVN 826



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 94/194 (48%), Gaps = 4/194 (2%)

Query: 187 ITGKCKLITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLRE-QNTQLYFKVA 244
           +T  C LI D         + S LL+E +E+ L P+++ + +++   R+ QN +    + 
Sbjct: 643 VTVYCALI-DGFCRKGDMVNASQLLSELQEVGLSPNKVVYSSMISGFRKLQNMEAALHLH 701

Query: 245 ELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK 304
           + +++E     +++ Y+ LI    KE  L  A  +  +M   GI+PD++T +VL+H    
Sbjct: 702 KRMINE-GIPCDLQIYTTLISGLLKEGKLLFASELYAEMLAKGIMPDLITYSVLIHGLCN 760

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
            G L+ A++  E +      P   +YN++I  +   G  +    L + M+  G+   +  
Sbjct: 761 KGQLENAQKILEDMDRKCMTPTVFIYNTLITGHFKEGNLQEAFRLHNEMLDKGLVPDDTT 820

Query: 365 YLALLRSFAQCGDV 378
           Y  L+    + G++
Sbjct: 821 YDILVNGKVKDGNL 834



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 77/348 (22%), Positives = 144/348 (41%), Gaps = 46/348 (13%)

Query: 261 SKLIDAHAKENCLEDAE-----------------------------------RILKKMNE 285
           S +I A  +E  LE+AE                                    +L++M +
Sbjct: 228 SVMIRASMREGKLEEAEGWFREAKNKGVELDARAYSIVIEAVCKKPDSVAALGLLREMRD 287

Query: 286 NGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKL 345
            G VP  V  T ++ +  K G +  A +    + S G   +  V  +++  Y   G    
Sbjct: 288 KGWVPHEVIFTRVIGVCMKQGKMLEAVKVKGEMLSCGKPMNVVVATTLMKGYCKQGDLDS 347

Query: 346 GMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVE 405
            + L D M  +GI  +   Y  ++    + G++  A +I N M+ ++  PT+ +   L+ 
Sbjct: 348 ALELFDKMNENGICPNNVTYAVIIEWCCKNGNMDKAYEIYNQMKNKDISPTVFNVNSLIR 407

Query: 406 AYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
            Y +A  P++A   FD  +  G   +     S+++   K+  + +A ++  ++ + G  P
Sbjct: 408 GYLKARSPEEASKLFDEAVACG-IANVFTYNSLLSWLCKEGKMSEACSIWEKMVRKGVRP 466

Query: 466 GPATYTVLVDWLGRLQL--INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
              +Y  ++  LG  Q   ++ A  +  ++ E G  P       L D Y + G  + A  
Sbjct: 467 SVVSYNNMI--LGHCQQGDMDSANGVFVEMLEKGLKPNLITYSVLMDGYFKKGDTEYAFG 524

Query: 524 ALGFLEAKKEQMGPDDF--ERIINGLLAGGFLQDAQ-RVHGLMEAQGF 568
              +   + E + P DF    IINGL   G   ++Q R+  L++ +GF
Sbjct: 525 L--YDRMRGENIAPSDFTCNIIINGLCKAGRTSESQDRLKKLVQ-EGF 569



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 70/165 (42%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L E     N   YS +I    K   +E A  + K+M   GI  D+   T L+    K G 
Sbjct: 669 LQEVGLSPNKVVYSSMISGFRKLQNMEAALHLHKRMINEGIPCDLQIYTTLISGLLKEGK 728

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L  A E +  + + G  PD   Y+ +I    N GQ +    +++ M    +  +  IY  
Sbjct: 729 LLFASELYAEMLAKGIMPDLITYSVLIHGLCNKGQLENAQKILEDMDRKCMTPTVFIYNT 788

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGD 412
           L+    + G+++ A ++ N M  +   P   +  +LV    + G+
Sbjct: 789 LITGHFKEGNLQEAFRLHNEMLDKGLVPDDTTYDILVNGKVKDGN 833



 Score = 42.4 bits (98), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 51/259 (19%), Positives = 107/259 (41%), Gaps = 4/259 (1%)

Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
            ES R   F+ D +V+N ++ +YV   +    +   + +I   I     +    L    +
Sbjct: 142 IESSRRLDFESDSRVFNYLLNSYVKTKRINDAVDCFNSLIEKDIVPCLTVMNIFLSELVK 201

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
              +R A  + N M  +  +    + ++++ A  + G  ++A   F      G + D R 
Sbjct: 202 NNMIREARDVYNKMASKGVKGDCATISVMIRASMREGKLEEAEGWFREAKNKGVELDARA 261

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
            + +I A  KK     AL LL E+   G+ P    +T ++    +   + EA ++ G++ 
Sbjct: 262 YSIVIEAVCKKPDSVAALGLLREMRDKGWVPHEVIFTRVIGVCMKQGKMLEAVKVKGEML 321

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGF 552
             G+     +  +L   Y + G    AL+   F +  +  + P++  +  II      G 
Sbjct: 322 SCGKPMNVVVATTLMKGYCKQGDLDSALEL--FDKMNENGICPNNVTYAVIIEWCCKNGN 379

Query: 553 LQDAQRVHGLMEAQGFAAS 571
           +  A  ++  M+ +  + +
Sbjct: 380 MDKAYEIYNQMKNKDISPT 398



 Score = 42.0 bits (97), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 39/89 (43%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS LI     +  LE+A++IL+ M+   + P +     L+  + K GNL  A      + 
Sbjct: 751 YSVLIHGLCNKGQLENAQKILEDMDRKCMTPTVFIYNTLITGHFKEGNLQEAFRLHNEML 810

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMS 348
             G  PD   Y+ ++   V  G    G S
Sbjct: 811 DKGLVPDDTTYDILVNGKVKDGNLFSGAS 839


>gi|162460542|ref|NP_001105869.1| pentatricopeptide repeat protein [Zea mays]
 gi|95931777|gb|ABF57644.1| pentatricopeptide repeat protein [Zea mays]
          Length = 886

 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 135/307 (43%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS +I AH +   ++ AE ++++M E+GI   I     ++H Y+   +  +    FE L+
Sbjct: 359 YSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVVQDEKKCLIVFERLK 418

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             GF+P    Y  +I  YV  G+    +++   M + GI+ + + Y  L+  F    D  
Sbjct: 419 ECGFKPTIISYGCLINLYVKVGKVPKAIAISKEMESHGIKHNNKTYSMLINGFIHLHDFA 478

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  I   M     QP      LLVEA+ + G+ D+A   F+ M +   +P +R    +I
Sbjct: 479 NAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMQKERMQPSNRTFRPII 538

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             +     + +A + L  + + G  P   TY  L+  L R   + +A  +L K+S  G A
Sbjct: 539 EGFAVAGDMKRAFDTLDLMRRSGCAPTVMTYNALIHGLVRKHQVEKAVSVLDKMSIAGIA 598

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P       +   YA +G   KA +    ++    ++    +E ++      G +Q A  V
Sbjct: 599 PNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAV 658

Query: 560 HGLMEAQ 566
              M  Q
Sbjct: 659 TREMSFQ 665



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 118/239 (49%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
            V  Y+ LI    +++ +E A  +L KM+  GI P+  T T+++  Y+ +G++ +A E F
Sbjct: 565 TVMTYNALIHGLVRKHQVEKAVSVLDKMSIAGIAPNEHTYTIIMRGYAASGDIGKAFEYF 624

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             ++  G + D  +Y +++ A   +G+ +  +++   M    I R+  IY  L+  +A+ 
Sbjct: 625 TKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARR 684

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           GDV  A  +   M+ +   P + + T  + A  +AGD  +A +    M  +G KP+ +  
Sbjct: 685 GDVWEAADLLKQMKEDGIPPNIHTFTSYINACCKAGDMQRAENVIQEMADVGLKPNVKTF 744

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
            ++I  + + +L D+AL    E++  G +P  A Y  LV  L     + E     G  S
Sbjct: 745 TTLIKGWARVSLPDRALKCFEEMKSAGLKPDEAAYHCLVTSLLSRATVMEGSTYTGIFS 803



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 83/371 (22%), Positives = 154/371 (41%), Gaps = 47/371 (12%)

Query: 238 QLYFKVAE----LVLSEE----SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIV 289
            LY KV +    + +S+E      + N + YS LI+     +   +A  I + M ++G+ 
Sbjct: 434 NLYVKVGKVPKAIAISKEMESHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGLQ 493

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL 349
           PD     +LV  + K GN+DRA   FE ++    QP  + +  +I  +  AG  K     
Sbjct: 494 PDRAIYNLLVEAFCKMGNMDRAIRIFERMQKERMQPSNRTFRPIIEGFAVAGDMKRAFDT 553

Query: 350 VDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409
           +D+M  SG   +   Y AL+    +   V  A  + + M I    P   + T+++  Y  
Sbjct: 554 LDLMRRSGCAPTVMTYNALIHGLVRKHQVEKAVSVLDKMSIAGIAPNEHTYTIIMRGYAA 613

Query: 410 AGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL----------------- 452
           +GD  +A   F  +   G K D     +++ A  K   +  AL                 
Sbjct: 614 SGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFI 673

Query: 453 ------------------NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
                             +LL ++++DG  P   T+T  ++   +   +  AE ++ +++
Sbjct: 674 YNILIDGWARRGDVWEAADLLKQMKEDGIPPNIHTFTSYINACCKAGDMQRAENVIQEMA 733

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGF 552
           ++G  P  K   +L   +AR  +  +AL+   F E K   + PD+  +  ++  LL+   
Sbjct: 734 DVGLKPNVKTFTTLIKGWARVSLPDRALKC--FEEMKSAGLKPDEAAYHCLVTSLLSRAT 791

Query: 553 LQDAQRVHGLM 563
           + +     G+ 
Sbjct: 792 VMEGSTYTGIF 802



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 130/320 (40%), Gaps = 39/320 (12%)

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           ++V  Y+K G+   A+  FE++R+ G +P+  V+ S++ AY  AG  +  +S V+ M + 
Sbjct: 256 LMVVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVAGDMRGALSCVEEMKSE 315

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAG--------------------------QITNIMRI 390
           GIE +   Y  L+  + +  D + A                           Q  N+ R 
Sbjct: 316 GIEMTVVTYSILISGYGKTNDAQSADNLFKEAKTKLDNLNGIIYSNIIHAHCQSGNMDRA 375

Query: 391 EEFQPTLESCTL---------LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441
           EE    +E   +         ++  Y    D  +    F+ +   G KP       +I  
Sbjct: 376 EELVREMEEDGIDAPIDVYHSMMHGYTVVQDEKKCLIVFERLKECGFKPTIISYGCLINL 435

Query: 442 YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
           Y K   + KA+ +  E+E  G +    TY++L++    L     A  +   + + G  P 
Sbjct: 436 YVKVGKVPKAIAISKEMESHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGLQPD 495

Query: 502 FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQDAQRV 559
             I   L + + + G   +A++   F   +KE+M P +  F  II G    G ++ A   
Sbjct: 496 RAIYNLLVEAFCKMGNMDRAIRI--FERMQKERMQPSNRTFRPIIEGFAVAGDMKRAFDT 553

Query: 560 HGLMEAQGFAASERLKVALI 579
             LM   G A +     ALI
Sbjct: 554 LDLMRRSGCAPTVMTYNALI 573



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 138/340 (40%), Gaps = 16/340 (4%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L E  F+  +  Y  LI+ + K   +  A  I K+M  +GI  +  T ++L++ +    +
Sbjct: 417 LKECGFKPTIISYGCLINLYVKVGKVPKAIAISKEMESHGIKHNNKTYSMLINGFIHLHD 476

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
              A   FE +   G QPD+ +YN ++ A+   G     + + + M    ++ S   +  
Sbjct: 477 FANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMQKERMQPSNRTFRP 536

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++  FA  GD++ A    ++MR     PT+ +   L+    +    ++A S  D M   G
Sbjct: 537 IIEGFAVAGDMKRAFDTLDLMRRSGCAPTVMTYNALIHGLVRKHQVEKAVSVLDKMSIAG 596

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL---GRLQ--L 482
             P++     ++  Y     + KA     ++++ G +     Y  L+      GR+Q  L
Sbjct: 597 IAPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSAL 656

Query: 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--- 539
               E    KI        F   + L D +AR G      +A   L+  KE   P +   
Sbjct: 657 AVTREMSFQKIPR----NTFIYNI-LIDGWARRG---DVWEAADLLKQMKEDGIPPNIHT 708

Query: 540 FERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
           F   IN     G +Q A+ V   M   G   + +    LI
Sbjct: 709 FTSYINACCKAGDMQRAENVIQEMADVGLKPNVKTFTTLI 748



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 3/147 (2%)

Query: 247 VLSEESFQTNVRD---YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS 303
           V  E SFQ   R+   Y+ LID  A+   + +A  +LK+M E+GI P+I T T  ++   
Sbjct: 658 VTREMSFQKIPRNTFIYNILIDGWARRGDVWEAADLLKQMKEDGIPPNIHTFTSYINACC 717

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363
           KAG++ RA+   + +   G +P+ K + ++I  +     P   +   + M ++G++  E 
Sbjct: 718 KAGDMQRAENVIQEMADVGLKPNVKTFTTLIKGWARVSLPDRALKCFEEMKSAGLKPDEA 777

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRI 390
            Y  L+ S      V      T I  +
Sbjct: 778 AYHCLVTSLLSRATVMEGSTYTGIFSV 804



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/225 (20%), Positives = 101/225 (44%)

Query: 324 QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQ 383
           +P ++ +  M++ Y   G      +  + M   GIE +  ++ +L+ ++A  GD+RGA  
Sbjct: 248 KPSRREFGLMVVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVAGDMRGALS 307

Query: 384 ITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYG 443
               M+ E  + T+ + ++L+  YG+  D   A + F          +    +++I A+ 
Sbjct: 308 CVEEMKSEGIEMTVVTYSILISGYGKTNDAQSADNLFKEAKTKLDNLNGIIYSNIIHAHC 367

Query: 444 KKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFK 503
           +   +D+A  L+ E+E+DG +     Y  ++     +Q   +   +  ++ E G  P   
Sbjct: 368 QSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVVQDEKKCLIVFERLKECGFKPTII 427

Query: 504 IQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLL 548
               L ++Y + G   KA+     +E+   +     +  +ING +
Sbjct: 428 SYGCLINLYVKVGKVPKAIAISKEMESHGIKHNNKTYSMLINGFI 472


>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Brachypodium distachyon]
          Length = 651

 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 132/284 (46%), Gaps = 2/284 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ L++   KE  L DAE +L +M E G+ PD+ T T L+H Y + GN+++A + F
Sbjct: 368 DVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFF 427

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           +++     +PD   YN++I      G       L D M +  I  +   Y  L+ S  + 
Sbjct: 428 DTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEK 487

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G V  A    + M  +   P + +   +++ Y ++G+  + +     M      PD    
Sbjct: 488 GQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITY 547

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I  Y K+  + +A NLL  +E +  +P   TY +++        + EA+ +  K+  
Sbjct: 548 NTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGA 607

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD 539
            G  P     +S+ + +  AG  KK+ Q     E  ++ + PDD
Sbjct: 608 RGIEPDRYTYMSMINGHVVAGNSKKSFQLHD--EMLQKGLAPDD 649



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 152/341 (44%), Gaps = 7/341 (2%)

Query: 246 LVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKA 305
           LVLS  S + N    + ++ ++ K     + + ++ +M +  + PD+VT  V+V    +A
Sbjct: 149 LVLSSNS-EVNTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDARFRA 207

Query: 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
           G+++ A    +S+ S G +P    YNS++   +  G+      +   M   G+      +
Sbjct: 208 GDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSF 267

Query: 366 LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
             L+  F + G++  A +    MR     P + S + L+  + + G+ D A      M  
Sbjct: 268 NMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMRE 327

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
            G  PD      +I  + +  L+ +AL +  E+   G  P   TY  L++ L + + +++
Sbjct: 328 FGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSD 387

Query: 486 AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ-MGPD--DFER 542
           AE+LL ++ E G  P      +L   Y R G  +KALQ   F +   +Q + PD   +  
Sbjct: 388 AEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQ---FFDTISDQRLRPDIVTYNT 444

Query: 543 IINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQT 583
           +I+G+   G L  A  +   M ++    +      LI S  
Sbjct: 445 LIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHC 485



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 139/311 (44%), Gaps = 4/311 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +VR ++ LI    +   LE+A R  K+M    + PD+V+ + L+ ++++ G +D A E  
Sbjct: 263 DVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYL 322

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +R  G  PD  +Y  +I  +  AG     + + D M+  G       Y  LL    + 
Sbjct: 323 REMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKE 382

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
             +  A ++ N M+     P L + T L+  Y + G+ ++A   FD +     +PD    
Sbjct: 383 RRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTY 442

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I    ++  L KA  L  ++      P   TY++L+D       ++ A   L ++  
Sbjct: 443 NTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVN 502

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFL 553
            G  P      S+   Y R+G   K  Q L   + + +++ PD   +  +I+G +  G +
Sbjct: 503 KGIVPNIMTYNSIIKGYCRSGNVSKGQQFLP--KMRHDKVMPDLITYNTLIHGYVKEGKM 560

Query: 554 QDAQRVHGLME 564
            +A  +  +ME
Sbjct: 561 HEAFNLLKIME 571



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/328 (21%), Positives = 141/328 (42%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  +S LI    +   ++ A   L++M E G++PD V  T+++  + +AG +  A    
Sbjct: 298 DVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVR 357

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + + + G  PD   YN+++       +      L++ M   G+      +  L+  + + 
Sbjct: 358 DEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRD 417

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G++  A Q  + +  +  +P + +   L++   + GD  +A   +D M      P+    
Sbjct: 418 GNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTY 477

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
           + +I ++ +K  +D A   L E+   G  P   TY  ++    R   +++ +Q L K+  
Sbjct: 478 SILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRH 537

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
               P      +L   Y + G   +A   L  +E +  Q     +  II+G    G +Q+
Sbjct: 538 DKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQE 597

Query: 556 AQRVHGLMEAQGFAASERLKVALISSQT 583
           A  V+  M A+G        +++I+   
Sbjct: 598 ADWVYKKMGARGIEPDRYTYMSMINGHV 625



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 106/219 (48%), Gaps = 6/219 (2%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAEL---VLSEESFQTNVRDYSKLIDAHAKENCLE 274
           L+P  + +  L+D +  Q      K  EL   + S E F  +V  YS LID+H ++  ++
Sbjct: 435 LRPDIVTYNTLIDGMCRQGD--LGKANELWDDMHSREIFPNHV-TYSILIDSHCEKGQVD 491

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           +A   L +M   GIVP+I+T   ++  Y ++GN+ + ++    +R     PD   YN++I
Sbjct: 492 NAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLI 551

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
             YV  G+     +L+ +M    ++     Y  ++  F+  G+++ A  +   M     +
Sbjct: 552 HGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGIE 611

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           P   +   ++  +  AG+  ++    D M++ G  PDD+
Sbjct: 612 PDRYTYMSMINGHVVAGNSKKSFQLHDEMLQKGLAPDDK 650



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 110/263 (41%), Gaps = 3/263 (1%)

Query: 205 EDPSPLLAEWKEL-LQPSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVRDYSK 262
            D   LL E KE  + P    +  L+    R+ N +   +  +  +S++  + ++  Y+ 
Sbjct: 386 SDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFD-TISDQRLRPDIVTYNT 444

Query: 263 LIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG 322
           LID   ++  L  A  +   M+   I P+ VT ++L+  + + G +D A    + + + G
Sbjct: 445 LIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKG 504

Query: 323 FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAG 382
             P+   YNS+I  Y  +G    G   +  M    +      Y  L+  + + G +  A 
Sbjct: 505 IVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAF 564

Query: 383 QITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAY 442
            +  IM  E  QP   +  +++  +   G+  +A   +  M   G +PD     SMI  +
Sbjct: 565 NLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGIEPDRYTYMSMINGH 624

Query: 443 GKKNLLDKALNLLLELEKDGFEP 465
                  K+  L  E+ + G  P
Sbjct: 625 VVAGNSKKSFQLHDEMLQKGLAP 647



 Score = 47.0 bits (110), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 66/314 (21%), Positives = 120/314 (38%), Gaps = 51/314 (16%)

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           +L+  Y+++     A EAF  L  H         N+++ A   AG P L      ++++S
Sbjct: 94  LLIRTYTQSRKPREAFEAFRLLLDHRVPIPAAASNALLAALSRAGWPHLTADAYRLVLSS 153

Query: 357 GIERSEEIYLALLRSFAQ-----------------------------------CGDVRGA 381
             E +      ++ S+ +                                    GDV  A
Sbjct: 154 NSEVNTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDARFRAGDVEAA 213

Query: 382 GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441
             + + M  +  +P L +   +++   + G  D+AR  F  M   G  PD R    +I  
Sbjct: 214 MALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGG 273

Query: 442 YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
           + +   L++AL    E+      P   +++ L+    R   ++ A + L ++ E G  P 
Sbjct: 274 FCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPD 333

Query: 502 FKIQVSLCDMYARAGIEKKALQ------ALGFLEAKKEQMGPD--DFERIINGLLAGGFL 553
             I   +   + RAG+  +AL+      A G L        PD   +  ++NGL     L
Sbjct: 334 GVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCL--------PDVVTYNTLLNGLCKERRL 385

Query: 554 QDAQRVHGLMEAQG 567
            DA+ +   M+ +G
Sbjct: 386 SDAEELLNEMKERG 399


>gi|90399139|emb|CAJ86163.1| H0913C04.4 [Oryza sativa Indica Group]
 gi|125550286|gb|EAY96108.1| hypothetical protein OsI_17985 [Oryza sativa Indica Group]
          Length = 900

 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 132/307 (42%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS +I AH +   +E AE ++ +M E+GI   I     ++H Y+   N ++    FE L+
Sbjct: 371 YSNIIHAHCQSGNMERAEELVCEMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLK 430

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             GF+P    Y  ++  YV  G+    +S+   M + GI+ + + Y  L+  F    D  
Sbjct: 431 ECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFA 490

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  I   M     QP      LL+EA+ + G+ D+A    + M +   +P +R    +I
Sbjct: 491 NAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPII 550

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             Y     +  AL+ L  + + G  P   TY  L+  L R   +  A  +L K+S  G  
Sbjct: 551 EGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGIT 610

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P       +   YA +G   KA +    ++    ++    +E ++      G +Q A  V
Sbjct: 611 PNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAV 670

Query: 560 HGLMEAQ 566
              M  Q
Sbjct: 671 TREMSFQ 677



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 125/253 (49%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
            V  Y+ LI    +++ ++ A  +L KM+  GI P+  T T+++  Y+ +G++ +A E F
Sbjct: 577 TVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYF 636

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             ++  G + D  +Y +++ A   +G+ +  +++   M    I R+  IY  L+  +A+ 
Sbjct: 637 TKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARR 696

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           GDV  A  +   M+ +   P + + T  + A  +AGD  +A    + M+ +G KP+ +  
Sbjct: 697 GDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTY 756

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I  + + +L D+AL    E++  G +P  A+Y  LV  L     + E     G IS 
Sbjct: 757 TTLIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLVTSLLSRATVMEGSTYTGIISV 816

Query: 496 LGEAPPFKIQVSL 508
             E     + V L
Sbjct: 817 CREMSENDLTVDL 829



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 91/414 (21%), Positives = 173/414 (41%), Gaps = 55/414 (13%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAE----LVLSEE----SFQTNVRDYSKLIDAHAK 269
            +PS I +  LL+        LY K+ +    L +S+E      + N + YS LI+    
Sbjct: 434 FKPSIISYGCLLN--------LYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIH 485

Query: 270 ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKV 329
            +   +A  I ++M  +G+ PD     +L+  + K GN+DRA    E ++    QP  + 
Sbjct: 486 LHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRA 545

Query: 330 YNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389
           +  +I  Y  AG  K  +  +D+M  SG   +   Y AL+    +   V+ A  + + M 
Sbjct: 546 FRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMS 605

Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD 449
           I    P   + T+++  Y  +GD  +A   F  +   G K D     +++ A  K   + 
Sbjct: 606 IAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQ 665

Query: 450 KAL-----------------------------------NLLLELEKDGFEPGPATYTVLV 474
            AL                                   +L+ ++++DG  P   TYT  +
Sbjct: 666 SALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYI 725

Query: 475 DWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ 534
           +   +   +  AE+++ ++ ++G  P  K   +L   +AR  +  +AL+   F E K   
Sbjct: 726 NACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKC--FEEMKLAG 783

Query: 535 MGPDD--FERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNR 586
           + PD+  +  ++  LL+   + +     G++      +   L V L ++  ++R
Sbjct: 784 LKPDEASYHCLVTSLLSRATVMEGSTYTGIISVCREMSENDLTVDLRTAVHWSR 837



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 131/320 (40%), Gaps = 39/320 (12%)

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           +++  Y+K G+   A+  FE++R+ G +P+  V+ S++ AY  A   +  +S V+ M + 
Sbjct: 268 LMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSE 327

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAG--------------------------QITNIMRI 390
           G+E +   Y  L+  FA+  D + A                           Q  N+ R 
Sbjct: 328 GLELTIVTYSILISGFAKINDSQSADNLFKEAKTKLSSLNGIIYSNIIHAHCQSGNMERA 387

Query: 391 EEFQPTLESCTL---------LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441
           EE    +E   +         ++  Y    + ++    F+ +   G KP       ++  
Sbjct: 388 EELVCEMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNL 447

Query: 442 YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
           Y K   + KAL++  E+E  G +    TY++L++    L     A  +  ++   G  P 
Sbjct: 448 YVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPD 507

Query: 502 FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQDAQRV 559
             I   L + + + G   +A+  L   + +KE+M P +  F  II G    G ++ A   
Sbjct: 508 RAIYNLLIEAFCKMGNMDRAICILE--KMQKERMQPSNRAFRPIIEGYAVAGDMKSALDT 565

Query: 560 HGLMEAQGFAASERLKVALI 579
             LM   G   +     ALI
Sbjct: 566 LDLMRRSGCVPTVMTYNALI 585



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/246 (20%), Positives = 107/246 (43%), Gaps = 4/246 (1%)

Query: 303 SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE 362
           S+  N      AFE +     +P ++ +  MI+ Y   G      +  + M   GIE + 
Sbjct: 243 SRPDNWQAVVSAFERIP----KPSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNA 298

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
            ++ +L+ ++A   D+RGA      M+ E  + T+ + ++L+  + +  D   A + F  
Sbjct: 299 FVFTSLVHAYAVARDMRGALSCVEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKE 358

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
                   +    +++I A+ +   +++A  L+ E+E+DG +     Y  ++     +Q 
Sbjct: 359 AKTKLSSLNGIIYSNIIHAHCQSGNMERAEELVCEMEEDGIDAPIDVYHSMMHGYTIIQN 418

Query: 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFER 542
            N+   +  ++ E G  P       L ++Y + G   KAL     +E+   +     +  
Sbjct: 419 ENKCLVVFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSM 478

Query: 543 IINGLL 548
           +ING +
Sbjct: 479 LINGFI 484


>gi|449484944|ref|XP_004157025.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g16010-like [Cucumis sativus]
          Length = 637

 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 109/412 (26%), Positives = 178/412 (43%), Gaps = 23/412 (5%)

Query: 170 EKIHERGEMILPE-EPKPITGKCKLITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWIN 227
           EKIHE    I  E    P T     +      LE+ +    L  E KE  L P+   +  
Sbjct: 211 EKIHELYNEICSEGNCSPDTITYSALISAFGKLERYDFAFRLFDEMKENGLHPTEKIYTT 270

Query: 228 LLDRLREQNTQLYFKV----AELVLSEE----SFQTNVRDYSKLIDAHAKENCLEDAERI 279
           +L         +YFK+    A L L EE         V  Y++LI    K   ++DA  +
Sbjct: 271 IL--------AMYFKLNKVEAALRLVEEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSL 322

Query: 280 LKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339
              M ++G  PD+V    L+++  +AG L+ A + F  + S    P+   YN++I A   
Sbjct: 323 FFNMLKDGCKPDVVLINNLINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFE 382

Query: 340 AGQPKLGMSL-VDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398
           +  P    +L  + M  +GI  S   Y  L+  F +   V  A  +   M  + F P   
Sbjct: 383 SKAPASEAALWFEKMKANGIAPSSFTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPA 442

Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
           +   L+++ G+A   + A   F  +     +   R  A MI  +G    L  A++L  E 
Sbjct: 443 AYCSLIDSLGRAKRYEAANELFQELKENCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEX 502

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
           EK G  P   TY  L+  + R  +I+EA  L+  + E G  P  K    + +  A+ G  
Sbjct: 503 EKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGP 562

Query: 519 KKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
           K+A++   F + K+ ++ PD   +  I++ L   G  + A ++   M+ +GF
Sbjct: 563 KRAIEM--FTKMKESEIMPDAVSYNTILSCLSRAGMFEMAAKLMREMKLKGF 612



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 97/221 (43%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LID   K N +E A  +L++M+E G  P       L+    +A   + A E F+ L+
Sbjct: 409 YAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQELK 468

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
            +  +   +VY  MI  + N G+    + L       G       Y AL+    + G + 
Sbjct: 469 ENCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEXEKLGCSPDVYTYNALMSGMIRAGMID 528

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  +   MR     P ++S  +++    + G P +A   F  M      PD     +++
Sbjct: 529 EAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKESEIMPDAVSYNTIL 588

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
           +   +  + + A  L+ E++  GFE    TY+ +++ +G++
Sbjct: 589 SCLSRAGMFEMAAKLMREMKLKGFEYDSITYSSILEAVGKV 629



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 57/119 (47%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ L+    +   +++A  +++ M ENG  PDI +  ++++  +K G   RA E F
Sbjct: 510 DVYTYNALMSGMIRAGMIDEAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAIEMF 569

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
             ++     PD   YN+++     AG  ++   L+  M   G E     Y ++L +  +
Sbjct: 570 TKMKESEIMPDAVSYNTILSCLSRAGMFEMAAKLMREMKLKGFEYDSITYSSILEAVGK 628



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 83/193 (43%), Gaps = 4/193 (2%)

Query: 220 PSRIDWINLLDRLREQNTQLYFKVAELV--LSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           P    + +L+D L     + Y    EL   L E   +++ R Y+ +I        L DA 
Sbjct: 439 PCPAAYCSLIDSL--GRAKRYEAANELFQELKENCGRSSARVYAVMIKHFGNCGRLSDAV 496

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
            +  +  + G  PD+ T   L+    +AG +D A     ++R +G  PD K +N ++   
Sbjct: 497 DLFCEXEKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRNMRENGCTPDIKSHNIILNGL 556

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
              G PK  + +   M  S I      Y  +L   ++ G    A ++   M+++ F+   
Sbjct: 557 AKTGGPKRAIEMFTKMKESEIMPDAVSYNTILSCLSRAGMFEMAAKLMREMKLKGFEYDS 616

Query: 398 ESCTLLVEAYGQA 410
            + + ++EA G+ 
Sbjct: 617 ITYSSILEAVGKV 629


>gi|356529465|ref|XP_003533312.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 148/323 (45%), Gaps = 4/323 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L  + FQ N   Y+ LI+   K      A + L+K++     PD+V    ++    K   
Sbjct: 155 LLAQGFQLNQVSYATLINGVCKIGDTRAAIKFLRKIDGRLTKPDVVMYNTIIDAMCKYQL 214

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A   F  +   G   D   YN++I  +   G+ K  + L++ M+   I  +   Y  
Sbjct: 215 VSEAYGLFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNI 274

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+ +  + G V+ A  +  +M     +P + + + L++ Y    +  +A+  F+ M  +G
Sbjct: 275 LVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMG 334

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD      +I  + K  ++D+ALNL  E+ +    PG  TY+ L+D L +   I+   
Sbjct: 335 VTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVW 394

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIIN 545
            L+ ++ + G+        SL D   + G   +A+    F + K +++ P+   F  +++
Sbjct: 395 DLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIAL--FNKMKDQEIRPNIFTFTILLD 452

Query: 546 GLLAGGFLQDAQRVHGLMEAQGF 568
           GL  GG L+DAQ V   +  +G+
Sbjct: 453 GLCKGGRLKDAQEVFQDLLTKGY 475



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 128/273 (46%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           + P+   +  L+D L ++      K    V+ +   + +V  YS L+D +     ++ A+
Sbjct: 265 INPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQ 324

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
            +   M+  G+ PD+ T T+L++ + K   +D A   F+ +      P    Y+S+I   
Sbjct: 325 HVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGL 384

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
             +G+      L+D M   G       Y +L+    + G +  A  + N M+ +E +P +
Sbjct: 385 CKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNI 444

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
            + T+L++   + G    A+  F  ++  G+  +      MI  + K+ LL++AL +L +
Sbjct: 445 FTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSK 504

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           +E +G  P   T+  ++  L +    ++AE+LL
Sbjct: 505 MEDNGCIPNAFTFETIIIALFKKDENDKAEKLL 537



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/297 (20%), Positives = 117/297 (39%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++K++D+ AK      A  +  ++   GI PD++T  +L++ +   G +         + 
Sbjct: 62  FNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKIL 121

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G+ PD    N++I      GQ K  +   D ++  G + ++  Y  L+    + GD R
Sbjct: 122 KRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTR 181

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A +    +     +P +     +++A  +     +A   F  M   G   D     ++I
Sbjct: 182 AAIKFLRKIDGRLTKPDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTLI 241

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             +     L +A+ LL E+      P   TY +LVD L +   + EA+ +L  + +    
Sbjct: 242 YGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVK 301

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDA 556
           P      +L D Y      KKA      +           +  +ING      + +A
Sbjct: 302 PDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEA 358



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 75/355 (21%), Positives = 131/355 (36%), Gaps = 11/355 (3%)

Query: 237 TQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTST 296
           T+L F V+  + +  SF  N   +S           ++DA     +M      P I+   
Sbjct: 5   TRLRFSVSLSIPNFSSFLQN-SSHSHFHSQPPSIQNVDDAVSQFNRMLCMRHTPPIIQFN 63

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
            ++  ++K  +   A      L   G QPD    N +I  + + GQ   G S++  ++  
Sbjct: 64  KILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKR 123

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
           G          L++     G V+ A    + +  + FQ    S   L+    + GD    
Sbjct: 124 GYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGD---T 180

Query: 417 RSNFDYMIRLG---HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVL 473
           R+   ++ ++     KPD     ++I A  K  L+ +A  L  E+   G      TY  L
Sbjct: 181 RAAIKFLRKIDGRLTKPDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTL 240

Query: 474 VDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE 533
           +     +  + EA  LL ++      P       L D   + G  K+A   L  +   K 
Sbjct: 241 IYGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVML--KA 298

Query: 534 QMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNR 586
            + PD   +  +++G      ++ AQ V   M   G          LI+    N+
Sbjct: 299 CVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNK 353


>gi|302789998|ref|XP_002976767.1| hypothetical protein SELMODRAFT_105248 [Selaginella moellendorffii]
 gi|300155805|gb|EFJ22436.1| hypothetical protein SELMODRAFT_105248 [Selaginella moellendorffii]
          Length = 669

 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 128/267 (47%), Gaps = 3/267 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           ++    Q +   +S LI+   +    E+A +  ++M   GIVPD VT   ++ MY + G 
Sbjct: 169 MTGRGIQPDNYTFSTLINCAKRCRQPEEALKWFERMKSEGIVPDEVTYNSVIDMYGRVGR 228

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           ++ A E +E L+S  ++ D   Y ++   Y  AG  +  M LV  M  SG   +  I   
Sbjct: 229 VNEAVELYEKLKSVNWKLDTVTYGAIANVYARAGDYQSIMQLVQEMRDSGSSPNAVIMNT 288

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+ + ++ G V  A ++ N MR     PT  + ++LVE Y + G  DQA   ++ +   G
Sbjct: 289 LMGTLSKAGKVNQAKKVFNEMRTSGVSPTPVTLSILVEMYTRVGAYDQAFEVYETLKTEG 348

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            K D     S++ A  +   +++A ++L E+++ G  P   TY   ++      +++ A 
Sbjct: 349 WKCDVAVYNSLMKACVEGGRVEQAEDILKEMKRAGCNPDHLTYRTAMNTYATKGMVDPAR 408

Query: 488 QLLGKISELG---EAPPFKIQVSLCDM 511
           ++  K+  L    + P F + +  C +
Sbjct: 409 RMFDKVVALNGKPDTPLFTVMIRACKL 435



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 103/201 (51%), Gaps = 1/201 (0%)

Query: 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320
           + L+   +K   +  A+++  +M  +G+ P  VT ++LV MY++ G  D+A E +E+L++
Sbjct: 287 NTLMGTLSKAGKVNQAKKVFNEMRTSGVSPTPVTLSILVEMYTRVGAYDQAFEVYETLKT 346

Query: 321 HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRG 380
            G++ D  VYNS++ A V  G+ +    ++  M  +G       Y   + ++A  G V  
Sbjct: 347 EGWKCDVAVYNSLMKACVEGGRVEQAEDILKEMKRAGCNPDHLTYRTAMNTYATKGMVDP 406

Query: 381 AGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG-HKPDDRCTASMI 439
           A ++ + +     +P     T+++ A   AG+ +QA   FD M+  G   PD+R +  ++
Sbjct: 407 ARRMFDKVVALNGKPDTPLFTVMIRACKLAGEIEQASKIFDEMMESGCCSPDERVSGMLL 466

Query: 440 AAYGKKNLLDKALNLLLELEK 460
           +        D+ L +L  L+K
Sbjct: 467 SCMAMAKSDDERLAILDCLDK 487



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/268 (19%), Positives = 116/268 (43%), Gaps = 7/268 (2%)

Query: 306 GNLDRAKEA---FESLRSHG--FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
            N++R ++A   FE L++    ++ ++  YN M+    N  Q +L   LV+ M   GI+ 
Sbjct: 117 NNINRWEKALAFFEWLKARPELYEINRYTYNVMLKILRNGRQLELSEKLVEEMTGRGIQP 176

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
               +  L+    +C     A +    M+ E   P   +   +++ YG+ G  ++A   +
Sbjct: 177 DNYTFSTLINCAKRCRQPEEALKWFERMKSEGIVPDEVTYNSVIDMYGRVGRVNEAVELY 236

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
           + +  +  K D     ++   Y +       + L+ E+   G  P       L+  L + 
Sbjct: 237 EKLKSVNWKLDTVTYGAIANVYARAGDYQSIMQLVQEMRDSGSSPNAVIMNTLMGTLSKA 296

Query: 481 QLINEAEQLLGKISELGEAP-PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD 539
             +N+A+++  ++   G +P P  + + L +MY R G   +A +    L+ +  +     
Sbjct: 297 GKVNQAKKVFNEMRTSGVSPTPVTLSI-LVEMYTRVGAYDQAFEVYETLKTEGWKCDVAV 355

Query: 540 FERIINGLLAGGFLQDAQRVHGLMEAQG 567
           +  ++   + GG ++ A+ +   M+  G
Sbjct: 356 YNSLMKACVEGGRVEQAEDILKEMKRAG 383


>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
 gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
          Length = 862

 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 145/320 (45%), Gaps = 4/320 (1%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           ++  + +V  Y+ +ID   K   ++ AE +L+ M + G+ PD+VT   ++    KA  +D
Sbjct: 262 DKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVD 321

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
           RA    + +     +PD + YN +I  Y++ G+ K  +  ++ M   G++     Y  LL
Sbjct: 322 RADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLL 381

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               + G    A +I   M  +  +P +    +L+  Y   G         D M+  G  
Sbjct: 382 DYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGIS 441

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           P++     ++ AY KK ++D+A+++   + + G  P   TY +L+D L +L  +++A   
Sbjct: 442 PNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLK 501

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGL 547
             ++   G  P   +  SL  +Y    +++       F E   + + P+   F  I+  L
Sbjct: 502 FNQMINDGVTPNSVVFNSL--VYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNL 559

Query: 548 LAGGFLQDAQRVHGLMEAQG 567
              G +  AQR+   ME  G
Sbjct: 560 CNEGQVMVAQRLIDSMERVG 579



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/310 (22%), Positives = 140/310 (45%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++ ++ A+AK+  +++A  I  +M+++G+ PD+VT  +L+    K G +D A   F  + 
Sbjct: 447 FNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMI 506

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G  P+  V+NS++       + +    L   M   G+  +   +  ++ +    G V 
Sbjct: 507 NDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVM 566

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++ + M     +P + S   L+  +  AG  D+A    D M+ +G KPD     +++
Sbjct: 567 VAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTLL 626

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             Y K   +D A  L  E+ + G  PG  TY+ ++  L   +  +EA++L   + + G+ 
Sbjct: 627 RGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKELYLNMIKSGQQ 686

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
                   + +   +     +A +    L +K  +     F  +I+ L  GG  +DA  +
Sbjct: 687 WDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVLFKGGRKKDAMDL 746

Query: 560 HGLMEAQGFA 569
              + + G  
Sbjct: 747 FASIPSHGLV 756



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 67/300 (22%), Positives = 133/300 (44%), Gaps = 4/300 (1%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           ++  + +V  YS +ID   K   ++ AE +L+ M + G+ PD+VT   ++    KA  +D
Sbjct: 227 DKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVD 286

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
           RA+   + +   G +PD   YN++I     A        ++  MI   ++   + Y  L+
Sbjct: 287 RAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLI 346

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
             +   G+ +   +    M      P + + +LL++   + G   +AR  F  MIR G K
Sbjct: 347 HGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIK 406

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           P+      ++  Y  +  +    +LL  +  +G  P    + +++    +  +I+EA  +
Sbjct: 407 PNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHI 466

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGL 547
             ++S+ G +P       L D   + G    A+  L F +   + + P+   F  ++ GL
Sbjct: 467 FSRMSQHGLSPDVVTYGILIDALCKLGRVDDAV--LKFNQMINDGVTPNSVVFNSLVYGL 524



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/334 (21%), Positives = 136/334 (40%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +S+     +V  Y  LIDA  K   ++DA     +M  +G+ P+ V    LV+       
Sbjct: 470 MSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDR 529

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            ++A+E F  +   G +P+   +N+++    N GQ  +   L+D M   G+  +   Y  
Sbjct: 530 WEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNT 589

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+      G    A Q+ ++M     +P L S   L+  Y + G  D A   F  M+R G
Sbjct: 590 LIGGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKG 649

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P     ++++          +A  L L + K G +    TY ++++ L +   ++EA 
Sbjct: 650 VTPGAVTYSTILQGLFHTRRFSEAKELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAF 709

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
           ++   +      P       + D+  + G +K A+     + +         +  ++  +
Sbjct: 710 KIFQSLCSKDLRPNIITFTIMIDVLFKGGRKKDAMDLFASIPSHGLVPNVVTYCIMMKNI 769

Query: 548 LAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
           +  G L +   +   ME  G      +  A+I S
Sbjct: 770 IQEGLLDEFDNLFLAMEKSGCTPDSVMLNAIIRS 803



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/307 (20%), Positives = 135/307 (43%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           ++  + +++ Y+ LI  +      ++  R L++M   G+ PD+VT ++L+    K G   
Sbjct: 332 DKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCT 391

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A++ F  +   G +P+  +Y  ++  Y   G       L+D+M+ +GI  +  I+  +L
Sbjct: 392 EARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVL 451

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
            ++A+   +  A  I + M      P + +  +L++A  + G  D A   F+ MI  G  
Sbjct: 452 CAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVT 511

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           P+     S++      +  +KA  L  E+   G  P    +  ++  L     +  A++L
Sbjct: 512 PNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRL 571

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLA 549
           +  +  +G  P      +L   +  AG   +A Q L  + +   +     ++ ++ G   
Sbjct: 572 IDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCK 631

Query: 550 GGFLQDA 556
            G + +A
Sbjct: 632 TGRIDNA 638



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 110/257 (42%), Gaps = 5/257 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ LI  H      ++A ++L  M   G+ PD+++   L+  Y K G +D A   F
Sbjct: 583 NVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLF 642

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G  P    Y++++    +  +      L   MI SG +     Y  +L    + 
Sbjct: 643 REMLRKGVTPGAVTYSTILQGLFHTRRFSEAKELYLNMIKSGQQWDIYTYNIILNGLCKT 702

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
             V  A +I   +  ++ +P + + T++++   + G    A   F  +   G  P+    
Sbjct: 703 NCVDEAFKIFQSLCSKDLRPNIITFTIMIDVLFKGGRKKDAMDLFASIPSHGLVPNVVTY 762

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV-DWLGRLQLINEAEQLLGKIS 494
             M+    ++ LLD+  NL L +EK G  P       ++   LGR +++  A   L KI 
Sbjct: 763 CIMMKNIIQEGLLDEFDNLFLAMEKSGCTPDSVMLNAIIRSLLGRGEIM-RAGAYLSKID 821

Query: 495 ELG---EAPPFKIQVSL 508
           E+    EA    + +SL
Sbjct: 822 EMNFSLEASTTSLLISL 838


>gi|255556711|ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541456|gb|EEF43006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 634

 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/364 (22%), Positives = 156/364 (42%), Gaps = 52/364 (14%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +  + F  +   YSK+I      + +E A ++ ++M  NGI PD+ T T L+  + K G 
Sbjct: 113 MMSKGFIPDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGL 172

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +++A+  F+ ++  G  P+   Y ++I AY+   +      + +MM+++G   +   Y A
Sbjct: 173 IEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTA 232

Query: 368 LLRSFAQCGDVRGAGQITNIM--------------------------------------- 388
           L+    + G+   A QI   M                                       
Sbjct: 233 LIDGHCKAGETEKACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKA 292

Query: 389 -RIEEFQPTLESCTL------------LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
            +++E +  LE+ +L            L++ + + G  D+A+  F  M+  G  P+    
Sbjct: 293 HKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTY 352

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
           +S+I    K   LD AL +L ++ ++   P    YT +VD L ++   +EA +L+  + E
Sbjct: 353 SSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEE 412

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
            G  P      ++ D + +AG   + L+ L  + +K        +  +IN   A G L D
Sbjct: 413 KGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFITYRVLINHCCAAGLLDD 472

Query: 556 AQRV 559
           A ++
Sbjct: 473 AHKL 476



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 79/353 (22%), Positives = 152/353 (43%), Gaps = 13/353 (3%)

Query: 230 DRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIV 289
           D++   +  +YF++ +  L E     NV  Y  L+D   K + +++A  +L+ M+  G  
Sbjct: 256 DKVDIPDVDIYFRIVDSELKEP----NVVTYGALVDGLCKAHKVKEARDLLETMSLEGCE 311

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL 349
           P+ +    L+  + K G LD A+E F  +  HG  P+   Y+S+I       +  L + +
Sbjct: 312 PNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKDKRLDLALKV 371

Query: 350 VDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409
           +  M+ +    +  IY  ++    + G    A ++  +M  +   P + + T +++ +G+
Sbjct: 372 LTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGK 431

Query: 410 AGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPAT 469
           AG  D+       M   G  P+      +I       LLD A  LL E+++  +      
Sbjct: 432 AGRVDRCLELLQLMTSKGCAPNFITYRVLINHCCAAGLLDDAHKLLEEMKQTYWPKHIGM 491

Query: 470 YTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQA---LG 526
           Y  +++  G       +  LL ++SE G  P   +   L D + +AG  + AL+    L 
Sbjct: 492 YRKVIE--GFSHEFVASLGLLAELSEDGSVPILPVYKLLIDNFIKAGRLEMALELHEELS 549

Query: 527 FLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
              A  +    + +  +I  L     +  A +++  M  +GF     + V LI
Sbjct: 550 SFSAAYQ----NTYVSLIESLTLACKVDKAFKLYSDMTRRGFVPELSMLVCLI 598



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 69/346 (19%), Positives = 151/346 (43%), Gaps = 26/346 (7%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           + NV ++++ +    K    E A  ++++M   G +PD  T + ++     A  +++A +
Sbjct: 87  KVNVCNFTRCLCCIGK---FEKAYNVIREMMSKGFIPDSSTYSKVIGYLCNASKVEKAFQ 143

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            F+ ++ +G  PD   Y +++  +   G  +   +  D M   G   +   Y AL+ ++ 
Sbjct: 144 LFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYL 203

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF------------- 420
           +   +  A +I  +M      P + + T L++ + +AG+ ++A   +             
Sbjct: 204 KTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAGETEKACQIYARMKNDKVDIPDV 263

Query: 421 DYMIRLG----HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476
           D   R+      +P+     +++    K + + +A +LL  +  +G EP    Y  L+D 
Sbjct: 264 DIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDG 323

Query: 477 LGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG 536
             ++  ++EA+++  K+   G +P      SL D   +   +K+   AL  L    E   
Sbjct: 324 FCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFK---DKRLDLALKVLTKMLENSC 380

Query: 537 PDD---FERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
             +   +  +++GL   G   +A R+  +ME +G   +     A+I
Sbjct: 381 APNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTAMI 426



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 101/258 (39%), Gaps = 17/258 (6%)

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           AER   +M E G+V + V            G  ++A      + S GF PD   Y+ +I 
Sbjct: 71  AERAYNEMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFIPDSSTYSKVIG 130

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
              NA + +    L   M  +GI      Y  LL  F + G +  A    + M+ +   P
Sbjct: 131 YLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQQDGCAP 190

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
            + + T L+ AY +     +A   F+ M+  G  P+     ++I  + K    +KA  + 
Sbjct: 191 NVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAGETEKACQIY 250

Query: 456 LELEKDGF-----------------EPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
             ++ D                   EP   TY  LVD L +   + EA  LL  +S  G 
Sbjct: 251 ARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEARDLLETMSLEGC 310

Query: 499 APPFKIQVSLCDMYARAG 516
            P   I  +L D + + G
Sbjct: 311 EPNQIIYDALIDGFCKVG 328



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 123/299 (41%), Gaps = 16/299 (5%)

Query: 283 MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
           M   G  P  +    LVH Y ++G+   A +  + +   G+QP   VYN +I   + + +
Sbjct: 2   MITEGCYPSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGG-ICSTE 60

Query: 343 PKLGMSLVDM-------MITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
               M ++ +       M+  G+  ++       R     G    A  +   M  + F P
Sbjct: 61  DLPSMEVIGLAERAYNEMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFIP 120

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
              + + ++     A   ++A   F  M R G  PD     +++  + K  L+++A N  
Sbjct: 121 DSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWF 180

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
            E+++DG  P   TYT L+    + + ++ A ++   +   G  P      +L D + +A
Sbjct: 181 DEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKA 240

Query: 516 GIEKKALQALGFLEAKKEQM-GPDDFERII-------NGLLAGGFLQDAQRVHGLMEAQ 566
           G  +KA Q    ++  K  +   D + RI+       N +  G  +    + H + EA+
Sbjct: 241 GETEKACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEAR 299



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 124/279 (44%), Gaps = 5/279 (1%)

Query: 219 QPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
            P+   + +L+D+L +++   L  KV   +L E S   NV  Y++++D   K    ++A 
Sbjct: 346 SPNVYTYSSLIDKLFKDKRLDLALKVLTKML-ENSCAPNVVIYTEMVDGLCKVGKTDEAY 404

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
           R++  M E G  P++VT T ++  + KAG +DR  E  + + S G  P+   Y  +I   
Sbjct: 405 RLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFITYRVLINHC 464

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
             AG       L++ M  +   +   +Y  ++  F+    V   G +  +   +   P L
Sbjct: 465 CAAGLLDDAHKLLEEMKQTYWPKHIGMYRKVIEGFSH-EFVASLGLLAELSE-DGSVPIL 522

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
               LL++ + +AG  + A    + +        +    S+I +      +DKA  L  +
Sbjct: 523 PVYKLLIDNFIKAGRLEMALELHEELSSFSAAYQNT-YVSLIESLTLACKVDKAFKLYSD 581

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
           + + GF P  +    L+  L R+    EA QL   I ++
Sbjct: 582 MTRRGFVPELSMLVCLIKGLLRVGKWEEALQLSDSICQM 620



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 103/243 (42%), Gaps = 16/243 (6%)

Query: 352 MMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAG 411
           MMIT G   S  I+ +L+ ++ + GD   A ++   M I  +QP      +L+       
Sbjct: 1   MMITEGCYPSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICSTE 60

Query: 412 D-PDQ-----ARSNFDYMIRLG---HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           D P       A   ++ M+ +G   +K +       +   GK    +KA N++ E+   G
Sbjct: 61  DLPSMEVIGLAERAYNEMLEMGVVLNKVNVCNFTRCLCCIGK---FEKAYNVIREMMSKG 117

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522
           F P  +TY+ ++ +L     + +A QL  ++   G  P      +L D + + G+ ++A 
Sbjct: 118 FIPDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQAR 177

Query: 523 QALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
               F E +++   P+   +  +I+  L    L  A  +  +M + G   +     ALI 
Sbjct: 178 N--WFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALID 235

Query: 581 SQT 583
              
Sbjct: 236 GHC 238


>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 757

 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/324 (22%), Positives = 149/324 (45%), Gaps = 6/324 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + +E    NV  Y+ LIDA  K+  +++A  +L+ M   G+  ++++   +++     G 
Sbjct: 233 MEKEGISPNVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGR 292

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +    E  E +R  G  PD+  YN+++  +   G    G+ L+  M+  G+  +   Y  
Sbjct: 293 MSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTT 352

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    + G++  A +I + MR+   +P   + T L++ + Q G  ++A      MI  G
Sbjct: 353 LINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSG 412

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P      +++  Y     + +A+ +L  + + G  P   +Y+ ++    R + + +A 
Sbjct: 413 FSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAF 472

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALG-FLEAKKEQMGPDD--FERII 544
           Q+  ++ E G  P     V+   +     +++K ++A   F E  +  + PD+  +  +I
Sbjct: 473 QMKEEMVEKGVLPD---TVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLI 529

Query: 545 NGLLAGGFLQDAQRVHGLMEAQGF 568
           N     G L  A R+H  M  +GF
Sbjct: 530 NAYCVDGELSKALRLHDEMVQRGF 553



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 132/296 (44%), Gaps = 8/296 (2%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  Y+ +I+    +  + +   ++++M   G+VPD VT   LV+ + K GNL +     
Sbjct: 276 NLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLL 335

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G  P+   Y ++I     AG     + + D M   G+  +E  Y  L+  F Q 
Sbjct: 336 SEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQK 395

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A ++ + M +  F P++ +   LV  Y   G   +A      M+  G  PD    
Sbjct: 396 GLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSY 455

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
           +++IA + ++  L KA  +  E+ + G  P   TY+ L+  L   Q + EA  L  ++  
Sbjct: 456 STVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMR 515

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG--PDD--FERIINGL 547
            G  P      SL + Y   G   KAL+    L  +  Q G  PD+  +  +INGL
Sbjct: 516 RGLPPDEVTYTSLINAYCVDGELSKALR----LHDEMVQRGFLPDNVTYSVLINGL 567



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 124/306 (40%), Gaps = 17/306 (5%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E     +V  YS +I    +E  L  A ++ ++M E G++PD VT + L+        
Sbjct: 443 MVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQK 502

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L  A + F  +   G  PD+  Y S+I AY   G+    + L D M+  G       Y  
Sbjct: 503 LVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSV 562

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQP-------TLESCTL--------LVEAYGQAGD 412
           L+    +    + A ++   +  EE  P        +E+C+         LV+ +   G 
Sbjct: 563 LINGLNKKARTKVAKRLLLKLFYEESVPDDVTYNTLIENCSNNEFKSVEGLVKGFCMKGL 622

Query: 413 PDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTV 472
            ++A   F  M++  HKP+      MI  + +   + KA NL +ELE   F         
Sbjct: 623 MNEADRVFKTMLQRNHKPNAAIYNLMIHGHSRGGNVHKAYNLYMELEHSSFACHTVAVIA 682

Query: 473 LVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKK 532
           LV  L R  + +E  +LL  I         K+   L ++  + G     L  L   E  K
Sbjct: 683 LVKALAREGMNDELSRLLQNILRSCRLNDAKVAKVLVEVNFKEGNMDAVLNVL--TEMAK 740

Query: 533 EQMGPD 538
           + + PD
Sbjct: 741 DGLLPD 746



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 61/317 (19%), Positives = 119/317 (37%), Gaps = 10/317 (3%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           L D   +      +  V D+V  ++     S+ G + +A         HGF P    YN+
Sbjct: 118 LHDTFHLCSSPFSSSAVFDLVVKSL-----SRLGFVPKALTLLHLANRHGFAPTVLSYNA 172

Query: 333 MIMAYV-----NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNI 387
           ++ A +     N         +   M+ +G+  +   Y  ++R     GD+         
Sbjct: 173 VLDALLRRSSSNHRDYDDAERVFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRK 232

Query: 388 MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447
           M  E   P + +   L++A  +     +A +    M   G   +     S+I     K  
Sbjct: 233 MEKEGISPNVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGR 292

Query: 448 LDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVS 507
           + +   L+ E+   G  P   TY  LV+   +   +++   LL ++   G +P      +
Sbjct: 293 MSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTT 352

Query: 508 LCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
           L +   +AG   +A++    +  +  +     +  +I+G    G + +A +V   M   G
Sbjct: 353 LINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSG 412

Query: 568 FAASERLKVALISSQTF 584
           F+ S     AL+    F
Sbjct: 413 FSPSVVTYNALVHGYCF 429


>gi|255539196|ref|XP_002510663.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551364|gb|EEF52850.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 695

 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 137/297 (46%)

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           +AE I ++M +NG+ P       L+  Y KAG L  A+     +   G  PD+  Y+ +I
Sbjct: 309 EAEAIFEEMKDNGLKPKTRAYNGLLKGYVKAGMLKDAEFIVSEMERSGVSPDECTYSLLI 368

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
            AY NAG+ +    ++  M  + I  +  ++  +L S+   G+ + + Q+   M+    +
Sbjct: 369 DAYSNAGRWESARIVLKEMEANNIMPNSYVFSRILASYRDRGEWQKSFQVLKEMKNSGVR 428

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P      ++++ +G+    D A   FD M+  G +PD     ++I  + K  L ++A  L
Sbjct: 429 PDRHFYNVMIDTFGKFSCLDHAMDTFDKMLSEGIQPDTVTWNTLIDCHCKAELHERAEEL 488

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
             E+ + GF P   T+ ++++  G  +  ++ + L+G +  LG  P      +L D+Y +
Sbjct: 489 FEEMMEKGFSPCVTTFNIMINSFGEQERWDDVKTLMGNMRSLGLLPNVVTYTTLIDIYGK 548

Query: 515 AGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAAS 571
           +G    A++ L  +++   +     +  +IN     G  + A     LM A     S
Sbjct: 549 SGRFSDAIECLEDMKSAGLKPSSTMYNALINAYAQKGLSEQAVNAFRLMRADSLKPS 605



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 133/283 (46%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + +   +   R Y+ L+  + K   L+DAE I+ +M  +G+ PD  T ++L+  YS AG 
Sbjct: 317 MKDNGLKPKTRAYNGLLKGYVKAGMLKDAEFIVSEMERSGVSPDECTYSLLIDAYSNAGR 376

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            + A+   + + ++   P+  V++ ++ +Y + G+ +    ++  M  SG+      Y  
Sbjct: 377 WESARIVLKEMEANNIMPNSYVFSRILASYRDRGEWQKSFQVLKEMKNSGVRPDRHFYNV 436

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++ +F +   +  A    + M  E  QP   +   L++ + +A   ++A   F+ M+  G
Sbjct: 437 MIDTFGKFSCLDHAMDTFDKMLSEGIQPDTVTWNTLIDCHCKAELHERAEELFEEMMEKG 496

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P       MI ++G++   D    L+  +   G  P   TYT L+D  G+    ++A 
Sbjct: 497 FSPCVTTFNIMINSFGEQERWDDVKTLMGNMRSLGLLPNVVTYTTLIDIYGKSGRFSDAI 556

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEA 530
           + L  +   G  P   +  +L + YA+ G+ ++A+ A   + A
Sbjct: 557 ECLEDMKSAGLKPSSTMYNALINAYAQKGLSEQAVNAFRLMRA 599



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 113/249 (45%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +ID   K +CL+ A     KM   GI PD VT   L+  + KA   +RA+E FE + 
Sbjct: 434 YNVMIDTFGKFSCLDHAMDTFDKMLSEGIQPDTVTWNTLIDCHCKAELHERAEELFEEMM 493

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             GF P    +N MI ++    +     +L+  M + G+  +   Y  L+  + + G   
Sbjct: 494 EKGFSPCVTTFNIMINSFGEQERWDDVKTLMGNMRSLGLLPNVVTYTTLIDIYGKSGRFS 553

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A +    M+    +P+      L+ AY Q G  +QA + F  M     KP      S+I
Sbjct: 554 DAIECLEDMKSAGLKPSSTMYNALINAYAQKGLSEQAVNAFRLMRADSLKPSLLALNSLI 613

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            A+G+     +A ++L  ++++  +P   TYT L+  L R+   N+   +  ++   G  
Sbjct: 614 NAFGEDRRDAEAFSVLKYMKENDLKPDVVTYTTLMKALIRVDKFNKVPSVYEEMILAGCT 673

Query: 500 PPFKIQVSL 508
           P  K +  L
Sbjct: 674 PDRKARAML 682



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 103/215 (47%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           E  Q +   ++ LID H K    E AE + ++M E G  P + T  ++++ + +    D 
Sbjct: 460 EGIQPDTVTWNTLIDCHCKAELHERAEELFEEMMEKGFSPCVTTFNIMINSFGEQERWDD 519

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
            K    ++RS G  P+   Y ++I  Y  +G+    +  ++ M ++G++ S  +Y AL+ 
Sbjct: 520 VKTLMGNMRSLGLLPNVVTYTTLIDIYGKSGRFSDAIECLEDMKSAGLKPSSTMYNALIN 579

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
           ++AQ G    A     +MR +  +P+L +   L+ A+G+     +A S   YM     KP
Sbjct: 580 AYAQKGLSEQAVNAFRLMRADSLKPSLLALNSLINAFGEDRRDAEAFSVLKYMKENDLKP 639

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
           D     +++ A  + +  +K  ++  E+   G  P
Sbjct: 640 DVVTYTTLMKALIRVDKFNKVPSVYEEMILAGCTP 674



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 116/236 (49%), Gaps = 6/236 (2%)

Query: 216 ELLQPSRIDWINLLDRLREQNTQLYFKVAELV--LSEESFQTNVRDYSKLIDAHAKENCL 273
           E +QP  + W  L+D       +L+ +  EL   + E+ F   V  ++ +I++  ++   
Sbjct: 460 EGIQPDTVTWNTLIDC--HCKAELHERAEELFEEMMEKGFSPCVTTFNIMINSFGEQERW 517

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           +D + ++  M   G++P++VT T L+ +Y K+G    A E  E ++S G +P   +YN++
Sbjct: 518 DDVKTLMGNMRSLGLLPNVVTYTTLIDIYGKSGRFSDAIECLEDMKSAGLKPSSTMYNAL 577

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           I AY   G  +  ++   +M    ++ S     +L+ +F +      A  +   M+  + 
Sbjct: 578 INAYAQKGLSEQAVNAFRLMRADSLKPSLLALNSLINAFGEDRRDAEAFSVLKYMKENDL 637

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA--YGKKNL 447
           +P + + T L++A  +    ++  S ++ MI  G  PD +  A + +A  Y K+ L
Sbjct: 638 KPDVVTYTTLMKALIRVDKFNKVPSVYEEMILAGCTPDRKARAMLRSALKYMKQTL 693



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 63/299 (21%), Positives = 126/299 (42%), Gaps = 37/299 (12%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA--KEAFES 317
           Y+ LI+A A+ N LE A  ++ +M ++G   D V  ++++    ++  +D    ++ +  
Sbjct: 187 YNALINACARNNDLEKAINLISRMRQDGYPSDFVNYSLIIQSLVRSNRIDSPILQKLYSE 246

Query: 318 LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE------------------ 359
           ++    + D ++ N +I+ +  AG P   M  + M+  SG+                   
Sbjct: 247 IQCDKLELDVQLSNDIIVGFAKAGDPNKAMEFLGMVQASGLSPRTATLIAVISALGDSGR 306

Query: 360 --RSEEI---------------YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402
              +E I               Y  LL+ + + G ++ A  I + M      P   + +L
Sbjct: 307 IIEAEAIFEEMKDNGLKPKTRAYNGLLKGYVKAGMLKDAEFIVSEMERSGVSPDECTYSL 366

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           L++AY  AG  + AR     M      P+    + ++A+Y  +    K+  +L E++  G
Sbjct: 367 LIDAYSNAGRWESARIVLKEMEANNIMPNSYVFSRILASYRDRGEWQKSFQVLKEMKNSG 426

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKA 521
             P    Y V++D  G+   ++ A     K+   G  P      +L D + +A + ++A
Sbjct: 427 VRPDRHFYNVMIDTFGKFSCLDHAMDTFDKMLSEGIQPDTVTWNTLIDCHCKAELHERA 485


>gi|357162065|ref|XP_003579293.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Brachypodium distachyon]
          Length = 858

 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 138/305 (45%), Gaps = 5/305 (1%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG-NLDRA 311
           +   V   S LI A+A+   + +A  +L+ M   G+ P  VT   ++    K G +L   
Sbjct: 229 YGNTVFANSALISAYARSGLVNEAMGVLESMKGAGLRPTTVTYNAVIDACGKGGVDLRFT 288

Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
              F  +      PD+K +NS++ A   AG  +   +L D MI  GI R    Y   + +
Sbjct: 289 LGYFRQMLRDRLCPDRKTFNSLLSACSRAGHLEDARALFDEMIHLGIGRDIYTYNTFIDA 348

Query: 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
             +CG++  A Q+   M  +  +P + + + L++ Y +    D+A   ++ M  LG + D
Sbjct: 349 ICKCGNIELAMQVLLDMEAKNVKPNVVTYSTLIDGYSKLEKYDEALKLYEKMKSLGIQLD 408

Query: 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
             C  +++A Y K     +   +  E+E  G E    TY  L++  G+   ++    L+ 
Sbjct: 409 RVCYNTVLAIYVKAGKYGEIAIVCDEMEDSGIEKDTVTYNSLINGYGKQGRLDIVSFLVQ 468

Query: 492 KISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLA 549
            +   G AP      +L D+Y++AG+   A     +L+ K+  + PD   F   I+ L  
Sbjct: 469 DMRRRGVAPSVLTYSTLIDIYSKAGMHGDAFNV--YLDFKESGLKPDVVLFSSFIDTLAK 526

Query: 550 GGFLQ 554
            G ++
Sbjct: 527 NGLVE 531



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 123/242 (50%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           ++  Y+  IDA  K   +E A ++L  M    + P++VT + L+  YSK    D A + +
Sbjct: 338 DIYTYNTFIDAICKCGNIELAMQVLLDMEAKNVKPNVVTYSTLIDGYSKLEKYDEALKLY 397

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E ++S G Q D+  YN+++  YV AG+      + D M  SGIE+    Y +L+  + + 
Sbjct: 398 EKMKSLGIQLDRVCYNTVLAIYVKAGKYGEIAIVCDEMEDSGIEKDTVTYNSLINGYGKQ 457

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +     +   MR     P++ + + L++ Y +AG    A + +      G KPD    
Sbjct: 458 GRLDIVSFLVQDMRRRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKPDVVLF 517

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
           +S I    K  L++ AL+LL ++ + G +P   TY  ++D  G+ ++++E +   G++  
Sbjct: 518 SSFIDTLAKNGLVEWALSLLNDMTEMGIKPNVVTYNTIIDAFGKSKVLSEEDPEAGEMGI 577

Query: 496 LG 497
           +G
Sbjct: 578 VG 579



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 106/223 (47%), Gaps = 3/223 (1%)

Query: 296 TVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMIT 355
           T  +    K    D A+ AF++  + G+       +++I AY  +G     M +++ M  
Sbjct: 202 TAAIGALGKMSRPDLARRAFDAGIAGGYGNTVFANSALISAYARSGLVNEAMGVLESMKG 261

Query: 356 SGIERSEEIYLALLRSFAQCG-DVRGA-GQITNIMRIEEFQPTLESCTLLVEAYGQAGDP 413
           +G+  +   Y A++ +  + G D+R   G    ++R +   P  ++   L+ A  +AG  
Sbjct: 262 AGLRPTTVTYNAVIDACGKGGVDLRFTLGYFRQMLR-DRLCPDRKTFNSLLSACSRAGHL 320

Query: 414 DQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVL 473
           + AR+ FD MI LG   D     + I A  K   ++ A+ +LL++E    +P   TY+ L
Sbjct: 321 EDARALFDEMIHLGIGRDIYTYNTFIDAICKCGNIELAMQVLLDMEAKNVKPNVVTYSTL 380

Query: 474 VDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
           +D   +L+  +EA +L  K+  LG         ++  +Y +AG
Sbjct: 381 IDGYSKLEKYDEALKLYEKMKSLGIQLDRVCYNTVLAIYVKAG 423


>gi|302794911|ref|XP_002979219.1| hypothetical protein SELMODRAFT_110655 [Selaginella moellendorffii]
 gi|300152987|gb|EFJ19627.1| hypothetical protein SELMODRAFT_110655 [Selaginella moellendorffii]
          Length = 1143

 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 146/309 (47%), Gaps = 4/309 (1%)

Query: 260  YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
            YS ++ A    N LE A  +++KM + G+  D V  ++L++ YSKAG ++ A       R
Sbjct: 795  YSSMVGALINCNQLEKAAGLVEKMRQIGLKCDSVLVSILLNAYSKAGLVEDADALIHMAR 854

Query: 320  SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
              G   D   YN++I A + AG+ K  +     +   G+  S + Y  ++  FA+ G  R
Sbjct: 855  GDGIPLDIVAYNTIIKADLRAGRLKKAIDTYSSLTNLGLRPSLQTYDTMISVFAKSGRTR 914

Query: 380  GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
             A ++   ++   FQP  +  + ++  Y ++G  + A   F+ M   G +P +    ++I
Sbjct: 915  DAEKMFKDLKSAGFQPDEKVYSQMMNCYAKSGMYEHAADLFEAMKLRGLRPHEVSYNNLI 974

Query: 440  AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             AY +     KA  LL+E+ K G  P   T+ +L+         NEAE  L ++      
Sbjct: 975  DAYARAGQFAKAEQLLVEMAKAGCPPSSVTFLLLISAYAHRGKCNEAENALERMQTAAIR 1034

Query: 500  PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQ 557
            P  +    +   ++RA +  +A+++  +L+ ++  + PD      +I  LL G   ++  
Sbjct: 1035 PTVRHYNEVMLAFSRARLPSQAMES--YLKMERSGIQPDVVSSRTMIRILLEGSMFEEGL 1092

Query: 558  RVHGLMEAQ 566
             ++   EA+
Sbjct: 1093 SLYKKTEAK 1101



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 102/207 (49%)

Query: 248  LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
            L+    + +++ Y  +I   AK     DAE++ K +   G  PD    + +++ Y+K+G 
Sbjct: 888  LTNLGLRPSLQTYDTMISVFAKSGRTRDAEKMFKDLKSAGFQPDEKVYSQMMNCYAKSGM 947

Query: 308  LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
             + A + FE+++  G +P +  YN++I AY  AGQ      L+  M  +G   S   +L 
Sbjct: 948  YEHAADLFEAMKLRGLRPHEVSYNNLIDAYARAGQFAKAEQLLVEMAKAGCPPSSVTFLL 1007

Query: 368  LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
            L+ ++A  G    A      M+    +PT+     ++ A+ +A  P QA  ++  M R G
Sbjct: 1008 LISAYAHRGKCNEAENALERMQTAAIRPTVRHYNEVMLAFSRARLPSQAMESYLKMERSG 1067

Query: 428  HKPDDRCTASMIAAYGKKNLLDKALNL 454
             +PD   + +MI    + ++ ++ L+L
Sbjct: 1068 IQPDVVSSRTMIRILLEGSMFEEGLSL 1094



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 137/307 (44%), Gaps = 16/307 (5%)

Query: 221 SRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERIL 280
           SRI ++ L  RL ++ T L  +V E      SF  +   Y++L     K   +  AE + 
Sbjct: 698 SRI-YLCLKFRLFDKATLLLHRVLE------SFTLDSAAYNQLTINFLKAGQVPPAEMLH 750

Query: 281 KKMNENGIVPDIVTSTV--LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338
            +M + G   D+  ST+  L+  Y KAG  +   +    L  + F     VY+SM+ A +
Sbjct: 751 SRMQDKGF--DVEDSTLGHLIAAYGKAGRYEVLTKLKPELPRNNF-----VYSSMVGALI 803

Query: 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398
           N  Q +    LV+ M   G++    +   LL ++++ G V  A  + ++ R +     + 
Sbjct: 804 NCNQLEKAAGLVEKMRQIGLKCDSVLVSILLNAYSKAGLVEDADALIHMARGDGIPLDIV 863

Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
           +   +++A  +AG   +A   +  +  LG +P  +   +MI+ + K      A  +  +L
Sbjct: 864 AYNTIIKADLRAGRLKKAIDTYSSLTNLGLRPSLQTYDTMISVFAKSGRTRDAEKMFKDL 923

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
           +  GF+P    Y+ +++   +  +   A  L   +   G  P      +L D YARAG  
Sbjct: 924 KSAGFQPDEKVYSQMMNCYAKSGMYEHAADLFEAMKLRGLRPHEVSYNNLIDAYARAGQF 983

Query: 519 KKALQAL 525
            KA Q L
Sbjct: 984 AKAEQLL 990



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 91/401 (22%), Positives = 165/401 (41%), Gaps = 70/401 (17%)

Query: 226 INLLDRLREQNTQLYFKVAELVLSEESFQTNVRD-------YSKLIDAHAKENCLEDAER 278
           +NL D   +     Y K   +  + ++F+T V         Y+ ++  +A+ + LEDA+ 
Sbjct: 552 LNLDDTAWKTLLHCYVKAGNVERATKTFKTLVESGIADLMAYNDMLSLYAEFDMLEDAKL 611

Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338
           + +++  + I PD V    +V +Y  A  +  A+E    +R  GF PD      +I AY 
Sbjct: 612 LFQQLKSSSIQPDQVWFGTMVKLYCNANMVAAAEEVLRQMREKGFTPDHITQGILINAYG 671

Query: 339 NAGQPKLGMSLV------DMMITSGIERSEEIYLAL-LRSFAQCG------------DVR 379
            A + +    L+      D    + I R   IYL L  R F +              D  
Sbjct: 672 EANRIEEAAGLLEASAKEDESEAAAISR---IYLCLKFRLFDKATLLLHRVLESFTLDSA 728

Query: 380 GAGQIT-NIMRIEEFQPT-------------LESCTL--LVEAYGQAG--------DPDQ 415
              Q+T N ++  +  P              +E  TL  L+ AYG+AG         P+ 
Sbjct: 729 AYNQLTINFLKAGQVPPAEMLHSRMQDKGFDVEDSTLGHLIAAYGKAGRYEVLTKLKPEL 788

Query: 416 ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
            R+NF Y             +SM+ A    N L+KA  L+ ++ + G +      ++L++
Sbjct: 789 PRNNFVY-------------SSMVGALINCNQLEKAAGLVEKMRQIGLKCDSVLVSILLN 835

Query: 476 WLGRLQLINEAEQLLGKISELGEAPPFKIQV--SLCDMYARAGIEKKALQALGFLEAKKE 533
              +  L+ +A+ L+      G+  P  I    ++     RAG  KKA+     L     
Sbjct: 836 AYSKAGLVEDADALIHMAR--GDGIPLDIVAYNTIIKADLRAGRLKKAIDTYSSLTNLGL 893

Query: 534 QMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERL 574
           +     ++ +I+     G  +DA+++   +++ GF   E++
Sbjct: 894 RPSLQTYDTMISVFAKSGRTRDAEKMFKDLKSAGFQPDEKV 934



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 88/196 (44%), Gaps = 1/196 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +I  + K    ++AE++ ++MNE  ++ D+ T +V+ ++  KAG  + A +  E L 
Sbjct: 489 YTSVISIYGKAGLYDEAEKLFQEMNELRLLVDVKTFSVMANVRLKAGKYNEAVQVMEELL 548

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G   D   + +++  YV AG  +        ++ SGI      Y  +L  +A+   + 
Sbjct: 549 AKGLNLDDTAWKTLLHCYVKAGNVERATKTFKTLVESGIA-DLMAYNDMLSLYAEFDMLE 607

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  +   ++    QP       +V+ Y  A     A      M   G  PD      +I
Sbjct: 608 DAKLLFQQLKSSSIQPDQVWFGTMVKLYCNANMVAAAEEVLRQMREKGFTPDHITQGILI 667

Query: 440 AAYGKKNLLDKALNLL 455
            AYG+ N +++A  LL
Sbjct: 668 NAYGEANRIEEAAGLL 683



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/316 (18%), Positives = 134/316 (42%), Gaps = 35/316 (11%)

Query: 289 VPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMS 348
           +P ++  ++L+ +Y +   +  A+ AF+ +      PD+  +++MI+ Y NA      ++
Sbjct: 273 IPSVIVYSMLLKVYGRDKQIGLAEAAFQEMLDQKLDPDEVAFSTMILNYANAEMFDEMLT 332

Query: 349 LVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYG 408
           + + M++ GI  S   Y  +L    +   +  A  +   +  E  + +  +  L++  Y 
Sbjct: 333 MYEAMMSRGIVPSSVTYTTMLIHLNKAERLADAALLWEDLVEESVELSPLAYALMITIYR 392

Query: 409 QAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK-------- 460
           + G  ++A   F+ M+  G+ PD      ++   GK    D+A+++   +++        
Sbjct: 393 KLGRFEEALEVFEAMLGAGYYPDSLIYNMVLHMLGKLGRYDEAVDVFTAMQRQELCTSKY 452

Query: 461 ------------DGFEPGPA---------------TYTVLVDWLGRLQLINEAEQLLGKI 493
                       D FE   +                YT ++   G+  L +EAE+L  ++
Sbjct: 453 SYATMLHICEKADKFELAASIFSDMQMKRCPVDEVVYTSVISIYGKAGLYDEAEKLFQEM 512

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFL 553
           +EL      K    + ++  +AG   +A+Q +  L AK   +    ++ +++  +  G +
Sbjct: 513 NELRLLVDVKTFSVMANVRLKAGKYNEAVQVMEELLAKGLNLDDTAWKTLLHCYVKAGNV 572

Query: 554 QDAQRVHGLMEAQGFA 569
           + A +    +   G A
Sbjct: 573 ERATKTFKTLVESGIA 588



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 68/300 (22%), Positives = 127/300 (42%), Gaps = 10/300 (3%)

Query: 238 QLYFKVAELVLSEESFQTNVRD--------YSKLIDAHAKENCLEDAERILKKMNENGIV 289
           ++Y +  ++ L+E +FQ  +          +S +I  +A     ++   + + M   GIV
Sbjct: 284 KVYGRDKQIGLAEAAFQEMLDQKLDPDEVAFSTMILNYANAEMFDEMLTMYEAMMSRGIV 343

Query: 290 PDIVT-STVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMS 348
           P  VT +T+L+H+ +KA  L  A   +E L     +     Y  MI  Y   G+ +  + 
Sbjct: 344 PSSVTYTTMLIHL-NKAERLADAALLWEDLVEESVELSPLAYALMITIYRKLGRFEEALE 402

Query: 349 LVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYG 408
           + + M+ +G      IY  +L    + G    A  +   M+ +E   +  S   ++    
Sbjct: 403 VFEAMLGAGYYPDSLIYNMVLHMLGKLGRYDEAVDVFTAMQRQELCTSKYSYATMLHICE 462

Query: 409 QAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPA 468
           +A   + A S F  M       D+    S+I+ YGK  L D+A  L  E+ +        
Sbjct: 463 KADKFELAASIFSDMQMKRCPVDEVVYTSVISIYGKAGLYDEAEKLFQEMNELRLLVDVK 522

Query: 469 TYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFL 528
           T++V+ +   +    NEA Q++ ++   G         +L   Y +AG  ++A +    L
Sbjct: 523 TFSVMANVRLKAGKYNEAVQVMEELLAKGLNLDDTAWKTLLHCYVKAGNVERATKTFKTL 582



 Score = 46.2 bits (108), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 64/324 (19%), Positives = 125/324 (38%), Gaps = 5/324 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ ++    K   L DA  + + + E  +    +   +++ +Y K G  + A E FE++ 
Sbjct: 349 YTTMLIHLNKAERLADAALLWEDLVEESVELSPLAYALMITIYRKLGRFEEALEVFEAML 408

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G+ PD  +YN ++      G+    + +   M    +  S+  Y  +L    +     
Sbjct: 409 GAGYYPDSLIYNMVLHMLGKLGRYDEAVDVFTAMQRQELCTSKYSYATMLHICEKADKFE 468

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  I + M+++         T ++  YG+AG  D+A   F  M  L    D +  + M 
Sbjct: 469 LAASIFSDMQMKRCPVDEVVYTSVISIYGKAGLYDEAEKLFQEMNELRLLVDVKTFSVMA 528

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
               K    ++A+ ++ EL   G       +  L+    +   +  A +    + E G A
Sbjct: 529 NVRLKAGKYNEAVQVMEELLAKGLNLDDTAWKTLLHCYVKAGNVERATKTFKTLVESGIA 588

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQDAQ 557
                   +  +YA   + + A   L F + K   + PD   F  ++        +  A+
Sbjct: 589 DLMAYN-DMLSLYAEFDMLEDA--KLLFQQLKSSSIQPDQVWFGTMVKLYCNANMVAAAE 645

Query: 558 RVHGLMEAQGFAASERLKVALISS 581
            V   M  +GF      +  LI++
Sbjct: 646 EVLRQMREKGFTPDHITQGILINA 669


>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
 gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
          Length = 649

 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/371 (23%), Positives = 153/371 (41%), Gaps = 35/371 (9%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + + S   +VR ++ LI    +   +E+A +  K+M + G+ PD+V+ + L+ ++S  G 
Sbjct: 253 MDQCSVAPDVRSFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGK 312

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D A      ++  G  PD  +Y  +I  +  AG     + + D M+  G       Y  
Sbjct: 313 MDHAAAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNT 372

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           LL    +   +  A ++ N M+     P L + T L+  Y + G+ ++A   FD ++   
Sbjct: 373 LLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQR 432

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            +PD     S+I    +K  L KA  L  ++      P   TY++L+D       + EA 
Sbjct: 433 LRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAF 492

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL--------------------GF 527
             L ++   G  P      S+   Y R+G  KK  Q L                    G+
Sbjct: 493 GFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHGY 552

Query: 528 LE-------------AKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572
           ++              +KE + PD   +  IING    G +++A RV   M A G     
Sbjct: 553 IKEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGFSEQGNMEEAGRVFKKMGASGIEPDR 612

Query: 573 RLKVALISSQT 583
              ++LI+   
Sbjct: 613 YTYMSLINGHV 623



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 130/284 (45%), Gaps = 2/284 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ L++   K++ L DAE +L +M E G+ PD+ T T L+H Y + GN ++A + F
Sbjct: 366 DVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLF 425

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           ++L     +PD   YNS+I      G       L D M    I  +   Y  L+ S  + 
Sbjct: 426 DTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEK 485

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G V  A    + M  +   P + +   +++ Y ++G+  + +     M++    PD    
Sbjct: 486 GQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITF 545

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I  Y K+  +  A N+   +EK+  +P   TY ++++       + EA ++  K+  
Sbjct: 546 NTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGFSEQGNMEEAGRVFKKMGA 605

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD 539
            G  P     +SL + +  AG  K+A Q     E       PDD
Sbjct: 606 SGIEPDRYTYMSLINGHVTAGNSKEAFQLHD--EMMHRGFAPDD 647



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 78/338 (23%), Positives = 145/338 (42%), Gaps = 1/338 (0%)

Query: 246 LVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKA 305
           LVLS +S + N    + ++ ++ K    + A+ ++ +M +  + PD+VT  VL+    +A
Sbjct: 147 LVLSSDS-EVNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRA 205

Query: 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
           G++D A    +S+ + G +P    +NS++       +      +   M    +      +
Sbjct: 206 GDVDAAIALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSF 265

Query: 366 LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
             L+  F + G+V  A +    M+     P + S + L+  +   G  D A +    M  
Sbjct: 266 NILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKG 325

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
           LG  PD      +I  + +   + +AL +  E+   G  P   TY  L++ L +   + +
Sbjct: 326 LGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLD 385

Query: 486 AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIIN 545
           AE+LL ++ E G  P      +L   Y R G  +KALQ    L  ++ +     +  +I+
Sbjct: 386 AEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLID 445

Query: 546 GLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQT 583
           G+   G L  A  +   M A+    +      LI S  
Sbjct: 446 GMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHC 483



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 72/309 (23%), Positives = 134/309 (43%), Gaps = 22/309 (7%)

Query: 168 VAEKIHERGEMI-LPEEPKPIT------GKCK----LITDKILSLEKEEDPSPLLAEWKE 216
           ++E +  R EM+ L   P  +T      G CK    L  +++L+  KE   +P L  +  
Sbjct: 348 MSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTT 407

Query: 217 LLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L+              R+ N +   ++ + +L  +  + +V  Y+ LID   ++  L  A
Sbjct: 408 LIH----------GYCRDGNFEKALQLFDTLL-HQRLRPDVVAYNSLIDGMCRKGDLAKA 456

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
             +   M+   I P+ VT ++L+  + + G ++ A    + + S G  P+   YNS+I  
Sbjct: 457 NELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKG 516

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           Y  +G  K G   +  M+   I      +  L+  + +  ++ GA  + NIM  E  QP 
Sbjct: 517 YCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPD 576

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
             +  +++  + + G+ ++A   F  M   G +PD     S+I  +       +A  L  
Sbjct: 577 AVTYNMIINGFSEQGNMEEAGRVFKKMGASGIEPDRYTYMSLINGHVTAGNSKEAFQLHD 636

Query: 457 ELEKDGFEP 465
           E+   GF P
Sbjct: 637 EMMHRGFAP 645



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 107/217 (49%), Gaps = 2/217 (0%)

Query: 218 LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L+P  + + +L+D + R+ +     ++ + + + E F  +V  YS LID+H ++  +E+A
Sbjct: 433 LRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFPNHV-TYSILIDSHCEKGQVEEA 491

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
              L +M   G +P+I+T   ++  Y ++GN+ + ++  + +      PD   +N++I  
Sbjct: 492 FGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHG 551

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           Y+         ++ ++M    ++     Y  ++  F++ G++  AG++   M     +P 
Sbjct: 552 YIKEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGFSEQGNMEEAGRVFKKMGASGIEPD 611

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
             +   L+  +  AG+  +A    D M+  G  PDD+
Sbjct: 612 RYTYMSLINGHVTAGNSKEAFQLHDEMMHRGFAPDDK 648



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 61/274 (22%), Positives = 113/274 (41%), Gaps = 6/274 (2%)

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           +L+  Y+++     A EAF  L  H         N+++ A   AG P L      ++++S
Sbjct: 92  LLIRTYTQSRKPREAFEAFRLLLDHRVPVPASASNALLAALSRAGWPHLAEEAYRLVLSS 151

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
             E +      ++ S+ +  +   A  + + M      P + +  +L++A  +AGD D A
Sbjct: 152 DSEVNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAA 211

Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476
            +  D M   G KP      S++    K    DKA  +   +++    P   ++ +L+  
Sbjct: 212 IALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGG 271

Query: 477 LGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFL-EAKKEQM 535
             R+  + EA +   ++ + G  P       L  +++  G   K   A  +L E K   +
Sbjct: 272 FCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRG---KMDHAAAYLREMKGLGL 328

Query: 536 GPDD--FERIINGLLAGGFLQDAQRVHGLMEAQG 567
            PD   +  +I G    G + +A RV   M   G
Sbjct: 329 VPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLG 362


>gi|440800754|gb|ELR21789.1| pentatricopeptide repeat domain/PPR repeatcontaining protein
           [Acanthamoeba castellanii str. Neff]
          Length = 559

 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 138/275 (50%), Gaps = 2/275 (0%)

Query: 249 SEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNEN-GIVPDIVTSTVLVHMYSKAGN 307
           S +  + N   Y+ ++ ++ ++  ++  E ++++M  + G+  D  T + +V  +S+AG 
Sbjct: 198 SGDGVEPNRTTYNAMVHSYGQQQMMDKMEALVERMRADPGLGLDNFTHSAVVAAWSRAGR 257

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D+A EAF+S+ + G QP    + +++     AG+    +  +D M   G++ S  +Y  
Sbjct: 258 VDKALEAFDSIAATGGQPSLHAWTAILHMLGTAGRSDEMLRTLDKMKRLGVKPSTAVYNT 317

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++ +F +  ++         MR +     +++   L++ + + G   +A   +  M R G
Sbjct: 318 IINAFGKARNIHSMMDTFKAMRRDGVAADVKTYNTLIDTWAKTGKAVEAEKFYVLMKREG 377

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            +P     AS++ AY + +  +K L L+  ++K+G  P    + +L+D  GR+    EAE
Sbjct: 378 LQPTMYTIASLMDAYTRADQFEKVLRLISRMKKEGRAPDNVVFNLLIDTYGRMGKPEEAE 437

Query: 488 QLL-GKISELGEAPPFKIQVSLCDMYARAGIEKKA 521
           ++L G + E G A       S+ + +AR G   KA
Sbjct: 438 KVLCGAMKEYGIALETNNFTSVIEAWARNGNLDKA 472



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 147/329 (44%), Gaps = 9/329 (2%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E   +  +  Y+ LIDA  K   L    +  + M E G+ P++V  T ++    K G+
Sbjct: 124 MREVGVRPGMSTYTILIDAWGKAGDLRRMWQAWEDMREQGLRPNVVVYTSVIATLGKLGD 183

Query: 308 LDRAKEAFESLR---SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMM-ITSGIERSEE 363
           +   +  F  ++     G +P++  YN+M+ +Y          +LV+ M    G+     
Sbjct: 184 VAAMERTFAEMQRSSGDGVEPNRTTYNAMVHSYGQQQMMDKMEALVERMRADPGLGLDNF 243

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
            + A++ ++++ G V  A +  + +     QP+L + T ++   G AG  D+     D M
Sbjct: 244 THSAVVAAWSRAGRVDKALEAFDSIAATGGQPSLHAWTAILHMLGTAGRSDEMLRTLDKM 303

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483
            RLG KP      ++I A+GK   +   ++    + +DG      TY  L+D   +    
Sbjct: 304 KRLGVKPSTAVYNTIINAFGKARNIHSMMDTFKAMRRDGVAADVKTYNTLIDTWAKTGKA 363

Query: 484 NEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FE 541
            EAE+    +   G  P      SL D Y RA   +K L+ +  +  KKE   PD+  F 
Sbjct: 364 VEAEKFYVLMKREGLQPTMYTIASLMDAYTRADQFEKVLRLISRM--KKEGRAPDNVVFN 421

Query: 542 RIINGLLAGGFLQDAQRV-HGLMEAQGFA 569
            +I+     G  ++A++V  G M+  G A
Sbjct: 422 LLIDTYGRMGKPEEAEKVLCGAMKEYGIA 450



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 34/176 (19%), Positives = 77/176 (43%), Gaps = 2/176 (1%)

Query: 246 LVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKA 305
           +++  E  Q  +   + L+DA+ + +  E   R++ +M + G  PD V   +L+  Y + 
Sbjct: 371 VLMKREGLQPTMYTIASLMDAYTRADQFEKVLRLISRMKKEGRAPDNVVFNLLIDTYGRM 430

Query: 306 GNLDRAKEAF-ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
           G  + A++    +++ +G   +   + S+I A+   G        +  M T    + +  
Sbjct: 431 GKPEEAEKVLCGAMKEYGIALETNNFTSVIEAWARNGNLDKAEEWLHRMNTDYATKPDIK 490

Query: 365 YLALLRSFA-QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
            L  L SF     DV+   ++ +++   + Q   ++   + + +     PDQ + N
Sbjct: 491 TLTTLLSFCIPAADVKRGRRVIHMIEQHKLQKDKQARETIRQFHAATKRPDQEKKN 546


>gi|168028441|ref|XP_001766736.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162681945|gb|EDQ68367.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 560

 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 120/261 (45%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +  E  +  V  Y++LI A+ + N L +A RI  +M E G  PD VT   LV ++SKAG 
Sbjct: 93  MRREGCEPCVVTYNRLIHAYGRANFLGEAMRIFYQMQEEGCSPDRVTYCTLVDLHSKAGF 152

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            D A + ++ ++  GFQPD   Y+ +I     AG+    + L + M+  G   S   Y  
Sbjct: 153 HDNAMDMYQKMQQAGFQPDTFTYSVIIHCLGKAGKVSEALKLFEEMVERGFAPSLVTYNI 212

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++   A+ G+   A ++ N M+   F P   + ++++E  GQ G   +A   F+ M + G
Sbjct: 213 IIDLQAKSGNYVMAMKLYNDMQDAGFHPDRVTYSIMMEVLGQIGHLQEAELMFNEMEQAG 272

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD      M+  +GK    ++AL    ++   G  P       L+    R+Q  + A 
Sbjct: 273 WVPDAPIYGVMVDMWGKARNAERALEWYQKMLDSGLTPNVQISNSLLGSYLRMQQFDLAF 332

Query: 488 QLLGKISELGEAPPFKIQVSL 508
            ++  +   G  P  +    L
Sbjct: 333 GVIETMKAWGLVPTLQTHTIL 353



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 124/282 (43%)

Query: 233 REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDI 292
            ++ + L  K  +    +E ++ +V  Y+ +I    +    E   R+L++M   G  P +
Sbjct: 43  HQKESGLALKFFDWAKEQEGYKHDVCTYTTMIGIMGRARNFEACSRLLQEMRREGCEPCV 102

Query: 293 VTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDM 352
           VT   L+H Y +A  L  A   F  ++  G  PD+  Y +++  +  AG     M +   
Sbjct: 103 VTYNRLIHAYGRANFLGEAMRIFYQMQEEGCSPDRVTYCTLVDLHSKAGFHDNAMDMYQK 162

Query: 353 MITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGD 412
           M  +G +     Y  ++    + G V  A ++   M    F P+L +  ++++   ++G+
Sbjct: 163 MQQAGFQPDTFTYSVIIHCLGKAGKVSEALKLFEEMVERGFAPSLVTYNIIIDLQAKSGN 222

Query: 413 PDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTV 472
              A   ++ M   G  PD    + M+   G+   L +A  +  E+E+ G+ P    Y V
Sbjct: 223 YVMAMKLYNDMQDAGFHPDRVTYSIMMEVLGQIGHLQEAELMFNEMEQAGWVPDAPIYGV 282

Query: 473 LVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
           +VD  G+ +    A +   K+ + G  P  +I  SL   Y R
Sbjct: 283 MVDMWGKARNAERALEWYQKMLDSGLTPNVQISNSLLGSYLR 324



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 106/228 (46%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + EE    +   Y  L+D H+K    ++A  + +KM + G  PD  T +V++H   KAG 
Sbjct: 128 MQEEGCSPDRVTYCTLVDLHSKAGFHDNAMDMYQKMQQAGFQPDTFTYSVIIHCLGKAGK 187

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A + FE +   GF P    YN +I     +G   + M L + M  +G       Y  
Sbjct: 188 VSEALKLFEEMVERGFAPSLVTYNIIIDLQAKSGNYVMAMKLYNDMQDAGFHPDRVTYSI 247

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++    Q G ++ A  + N M    + P      ++V+ +G+A + ++A   +  M+  G
Sbjct: 248 MMEVLGQIGHLQEAELMFNEMEQAGWVPDAPIYGVMVDMWGKARNAERALEWYQKMLDSG 307

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
             P+ + + S++ +Y +    D A  ++  ++  G  P   T+T+L+ 
Sbjct: 308 LTPNVQISNSLLGSYLRMQQFDLAFGVIETMKAWGLVPTLQTHTILLS 355



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 98/215 (45%), Gaps = 4/215 (1%)

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
           G +     Y  ++    +  +     ++   MR E  +P + +   L+ AYG+A    +A
Sbjct: 62  GYKHDVCTYTTMIGIMGRARNFEACSRLLQEMRREGCEPCVVTYNRLIHAYGRANFLGEA 121

Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476
              F  M   G  PD     +++  + K    D A+++  ++++ GF+P   TY+V++  
Sbjct: 122 MRIFYQMQEEGCSPDRVTYCTLVDLHSKAGFHDNAMDMYQKMQQAGFQPDTFTYSVIIHC 181

Query: 477 LGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG 536
           LG+   ++EA +L  ++ E G AP       + D+ A++G    A++   + + +     
Sbjct: 182 LGKAGKVSEALKLFEEMVERGFAPSLVTYNIIIDLQAKSGNYVMAMKL--YNDMQDAGFH 239

Query: 537 PDDFERIINGLLAG--GFLQDAQRVHGLMEAQGFA 569
           PD     I   + G  G LQ+A+ +   ME  G+ 
Sbjct: 240 PDRVTYSIMMEVLGQIGHLQEAELMFNEMEQAGWV 274



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 3/157 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + +  F  +   YS +++   +   L++AE +  +M + G VPD     V+V M+ KA N
Sbjct: 233 MQDAGFHPDRVTYSIMMEVLGQIGHLQEAELMFNEMEQAGWVPDAPIYGVMVDMWGKARN 292

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            +RA E ++ +   G  P+ ++ NS++ +Y+   Q  L   +++ M   G+  + + +  
Sbjct: 293 AERALEWYQKMLDSGLTPNVQISNSLLGSYLRMQQFDLAFGVIETMKAWGLVPTLQTHTI 352

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
           LL S   C       Q+ N+M           CTLL+
Sbjct: 353 LLSS---CTASAQHHQVVNLMHRSSETVYSFVCTLLL 386



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 77/169 (45%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E  F  ++  Y+ +ID  AK      A ++   M + G  PD VT ++++ +  + G+
Sbjct: 198 MVERGFAPSLVTYNIIIDLQAKSGNYVMAMKLYNDMQDAGFHPDRVTYSIMMEVLGQIGH 257

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L  A+  F  +   G+ PD  +Y  M+  +  A   +  +     M+ SG+  + +I  +
Sbjct: 258 LQEAELMFNEMEQAGWVPDAPIYGVMVDMWGKARNAERALEWYQKMLDSGLTPNVQISNS 317

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
           LL S+ +      A  +   M+     PTL++ T+L+ +   +    Q 
Sbjct: 318 LLGSYLRMQQFDLAFGVIETMKAWGLVPTLQTHTILLSSCTASAQHHQV 366


>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/340 (25%), Positives = 151/340 (44%), Gaps = 8/340 (2%)

Query: 247 VLSEESFQ----TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMY 302
           VL  E F+    + V  ++ +++   KE  L+ A   +  M   G  P++V+   ++H Y
Sbjct: 213 VLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGY 272

Query: 303 SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE 362
           S  GN++ A+   +++R  G +PD   Y S+I      G+ +    L D M+  G+  + 
Sbjct: 273 SSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNA 332

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
             Y  L+  +   GD+  A    + M  +   P++ +  LLV A    G   +A      
Sbjct: 333 VTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKE 392

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
           M + G  PD      +I  Y +     KA +L  E+   G EP   TYT L+  L R   
Sbjct: 393 MRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNR 452

Query: 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--F 540
           + EA+ L  KI + G +P   +  ++ D +   G  ++A   L   E  ++ + PD+  F
Sbjct: 453 MKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLK--EMDRKSVPPDEVTF 510

Query: 541 ERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
             ++ G    G +++A+ +   M+ +G          LIS
Sbjct: 511 NTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLIS 550



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 121/253 (47%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ L+ A   E  + +A+ ++K+M + GI+PD +T  +L++ YS+ GN  +A +  
Sbjct: 366 SVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLH 425

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             + S G +P    Y S+I       + K    L + ++  G+     ++ A++      
Sbjct: 426 NEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCAN 485

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G+V  A  +   M  +   P   +   L++   + G  ++AR   D M R G KPD    
Sbjct: 486 GNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISY 545

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I+ YG++  +  A  +  E+   GF P   TY  L+  L + Q  + AE+LL ++  
Sbjct: 546 NTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVN 605

Query: 496 LGEAPPFKIQVSL 508
            G +P     +SL
Sbjct: 606 KGISPDDSTYLSL 618



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 114/265 (43%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  LI    KE  LE+A  +  KM E G+VP+ VT   L+  Y   G+L+RA    + + 
Sbjct: 300 YGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMV 359

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P    YN ++ A    G+      ++  M   GI      Y  L+  +++CG+ +
Sbjct: 360 KKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAK 419

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  + N M  +  +PT  + T L+    +     +A   F+ ++  G  PD     +M+
Sbjct: 420 KAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMV 479

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             +     +++A  LL E+++    P   T+  L+    R   + EA  LL ++   G  
Sbjct: 480 DGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIK 539

Query: 500 PPFKIQVSLCDMYARAGIEKKALQA 524
           P      +L   Y R G  K A + 
Sbjct: 540 PDHISYNTLISGYGRRGDIKDAFRV 564



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 111/249 (44%)

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           ++A +    M E GIVP I T   ++ ++ K   ++ A   +  +           +N M
Sbjct: 174 DEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIM 233

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           +      G+ K     +  M   G + +   Y  ++  ++  G++ GA +I + MR++  
Sbjct: 234 VNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGI 293

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
           +P   +   L+    + G  ++A   FD M+ +G  P+     ++I  Y  K  L++A +
Sbjct: 294 EPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFS 353

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
              E+ K G  P  +TY +LV  L     + EA+ ++ ++ + G  P       L + Y+
Sbjct: 354 YRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYS 413

Query: 514 RAGIEKKAL 522
           R G  KKA 
Sbjct: 414 RCGNAKKAF 422



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/280 (21%), Positives = 114/280 (40%), Gaps = 13/280 (4%)

Query: 308 LDRAKEAFES---LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
           L RA EAF+    ++  G  P  +  N M+  ++   + ++   L   M    I  +   
Sbjct: 170 LRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYT 229

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
           +  ++    + G ++ A +    M    F+P + S   ++  Y   G+ + AR   D M 
Sbjct: 230 FNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMR 289

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
             G +PD     S+I+   K+  L++A  L  ++ + G  P   TY  L+D       + 
Sbjct: 290 VKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLE 349

Query: 485 EAEQLLGKISELGEAP---PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--D 539
            A     ++ + G  P    + + V    M  R G     ++     E +K+ + PD   
Sbjct: 350 RAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIK-----EMRKKGIIPDAIT 404

Query: 540 FERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
           +  +ING    G  + A  +H  M ++G   +     +LI
Sbjct: 405 YNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLI 444



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/236 (20%), Positives = 93/236 (39%), Gaps = 45/236 (19%)

Query: 218 LQPSRIDWINLLDRLREQN-----TQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC 272
           ++P+ + + +L+  L  +N       L+ K+ +     +    +V  ++ ++D H     
Sbjct: 433 IEPTHVTYTSLIYVLSRRNRMKEADDLFEKILD-----QGVSPDVIMFNAMVDGHCANGN 487

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           +E A  +LK+M+   + PD VT   L+    + G ++ A+   + ++  G +PD   YN+
Sbjct: 488 VERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNT 547

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I  Y   G  K    + D M++ G                                   
Sbjct: 548 LISGYGRRGDIKDAFRVRDEMLSIG----------------------------------- 572

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLL 448
           F PTL +   L++   +  + D A      M+  G  PDD    S+I   G  + L
Sbjct: 573 FNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGNVDTL 628


>gi|359488005|ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 586

 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 93/389 (23%), Positives = 164/389 (42%), Gaps = 26/389 (6%)

Query: 197 KILSLEKEEDPSPLLAEWKELLQPSRI-DWINLLDRLREQNTQLYFKVAELVLSEESFQT 255
           KIL L  + D +      + L    +I D ++L D++                  E FQ 
Sbjct: 129 KILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKM----------------IGEGFQP 172

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y  LI+   K      A R+L+ M +    PD+V  T ++    K   +  A   F
Sbjct: 173 NVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLF 232

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G  PD   Y S+I +  N  + K   +L++ MI S I     I+  ++ +  + 
Sbjct: 233 SKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKE 292

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A  + ++M I   +P + +   L++ +    + D+A   FD M+  G+ P+    
Sbjct: 293 GKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISY 352

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD--WLGRLQLINEAEQLLGKI 493
            ++I  Y K   +DKA  L  E+ +    P   TY  L+    +GRLQ   +A  L  ++
Sbjct: 353 NTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHXCHVGRLQ---DAIALFHEM 409

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGG 551
              G+ P       L D   +     +A+  L  +E     M PD   +  +I+G+   G
Sbjct: 410 VAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEG--SNMDPDIQIYTIVIDGMCRAG 467

Query: 552 FLQDAQRVHGLMEAQGFAASERLKVALIS 580
            L+ A+ +   + ++G   + R    +I+
Sbjct: 468 ELEAARDIFSNLSSKGLRPNVRTYTIMIN 496



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 127/280 (45%), Gaps = 16/280 (5%)

Query: 211 LAEWKEL-----------LQPSRIDWINLLDRLREQN--TQLYFKVAELVLSEESFQTNV 257
           L EWK +           + P  + +  ++D L ++   T+ +  V  +++     + NV
Sbjct: 257 LCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMII--RGVEPNV 314

Query: 258 RDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFES 317
             Y+ L+D H  ++ +++A ++   M  NG  P++++   L++ Y K   +D+A   FE 
Sbjct: 315 VTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEE 374

Query: 318 LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
           +      P+   YN++ M   + G+ +  ++L   M+  G       Y  LL    +   
Sbjct: 375 MCQKELIPNTVTYNTL-MHXCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSH 433

Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
           +  A  +   +      P ++  T++++   +AG+ + AR  F  +   G +P+ R    
Sbjct: 434 LDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTI 493

Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
           MI    ++ LLD+A  L +E++ +G  P   TY  +   L
Sbjct: 494 MINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGL 533



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 60/311 (19%), Positives = 112/311 (36%), Gaps = 35/311 (11%)

Query: 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318
           D+++L+ + AK         +  +M+  GI PD+ T  +L++ +     L  A      +
Sbjct: 71  DFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINSFCHLNRLGFAFSVLAKI 130

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
              G QPD   + ++I      G+    + L D MI  G                     
Sbjct: 131 LKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEG--------------------- 169

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
                         FQP + +   L+    + G+ + A      M +   +PD     S+
Sbjct: 170 --------------FQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSI 215

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           I +  K   + +A NL  ++   G  P   TYT L+  L  L        LL ++     
Sbjct: 216 IDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKI 275

Query: 499 APPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQR 558
            P   I  ++ D   + G   +A   +  +  +  +     +  +++G      + +A +
Sbjct: 276 MPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVK 335

Query: 559 VHGLMEAQGFA 569
           V   M   G+A
Sbjct: 336 VFDTMVHNGYA 346


>gi|225445222|ref|XP_002280919.1| PREDICTED: pentatricopeptide repeat-containing protein At5g21222
           [Vitis vinifera]
 gi|297738818|emb|CBI28063.3| unnamed protein product [Vitis vinifera]
          Length = 636

 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/396 (21%), Positives = 168/396 (42%), Gaps = 41/396 (10%)

Query: 221 SRIDWINLL-DRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERI 279
           SR   +N+L ++ + Q  QL F      L+EE  +  +  Y+ L+ A  ++   +    +
Sbjct: 73  SRTKLMNILIEKGKPQEAQLIFNS----LTEEGHRPTLITYTTLLAALTRQKRFKSIPSL 128

Query: 280 LKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339
           + K+ +NG+ PD V    +++ +S++GN+  A + F  ++  G +P    +N++I  Y N
Sbjct: 129 ISKLEKNGLKPDSVFFNAMINAFSESGNVKEAMKIFRKMKDRGCKPTTSTFNTLIKGYGN 188

Query: 340 AGQPKLGMSLVDMMIT-SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398
           AG P+  + L+D+M     ++ ++  + +L+R++     +  A  +   M     QP + 
Sbjct: 189 AGMPEECLKLLDLMSQEENVKPNDRTFNSLIRAWCNKKRITEAWNVVYKMAASGLQPDVV 248

Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE- 457
           +   L  AY Q G+  +A      M      P++R    +I  Y K+  +  AL  L   
Sbjct: 249 TYNTLARAYAQNGETSRAEGMILEMQNNRVMPNERTCGIIINGYCKEGKMKDALRFLYRM 308

Query: 458 ----------------------------------LEKDGFEPGPATYTVLVDWLGRLQLI 483
                                             +E+ G +P   T++ +++    + L+
Sbjct: 309 RNYGVHPNLVIFNSLIKGFLDITDTDGVDEALTLMEEFGVKPDVVTFSTIMNAWSSVGLM 368

Query: 484 NEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERI 543
           ++ +++   + + G  P       L   Y RAG  +KA   L  +     Q     F  I
Sbjct: 369 DKCQEIFDDMVKAGIEPDIHAFSILAKGYVRAGEPEKAESLLTAMGKSGVQPNVVIFTTI 428

Query: 544 INGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
           I+G  + G ++ A RV+  M   G   + +    LI
Sbjct: 429 ISGWCSAGKMEYASRVYEKMCEMGICPNLKTFETLI 464



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 151/326 (46%), Gaps = 4/326 (1%)

Query: 241 FKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
            K+ +L+  EE+ + N R ++ LI A   +  + +A  ++ KM  +G+ PD+VT   L  
Sbjct: 196 LKLLDLMSQEENVKPNDRTFNSLIRAWCNKKRITEAWNVVYKMAASGLQPDVVTYNTLAR 255

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
            Y++ G   RA+     ++++   P+++    +I  Y   G+ K  +  +  M   G+  
Sbjct: 256 AYAQNGETSRAEGMILEMQNNRVMPNERTCGIIINGYCKEGKMKDALRFLYRMRNYGVHP 315

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF--QPTLESCTLLVEAYGQAGDPDQARS 418
           +  I+ +L++ F    D  G  +   +M  EEF  +P + + + ++ A+   G  D+ + 
Sbjct: 316 NLVIFNSLIKGFLDITDTDGVDEALTLM--EEFGVKPDVVTFSTIMNAWSSVGLMDKCQE 373

Query: 419 NFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLG 478
            FD M++ G +PD    + +   Y +    +KA +LL  + K G +P    +T ++    
Sbjct: 374 IFDDMVKAGIEPDIHAFSILAKGYVRAGEPEKAESLLTAMGKSGVQPNVVIFTTIISGWC 433

Query: 479 RLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
               +  A ++  K+ E+G  P  K   +L   Y  A   +KA + L  +E K       
Sbjct: 434 SAGKMEYASRVYEKMCEMGICPNLKTFETLIWGYGEAKEPQKAEELLQIMEQKGVAPVKS 493

Query: 539 DFERIINGLLAGGFLQDAQRVHGLME 564
             + + +   A G   +A+R+   +E
Sbjct: 494 TIQLVADAWHALGLANEAKRIKNDVE 519



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 128/280 (45%), Gaps = 4/280 (1%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQT--NVRDYSKLIDAHAKENCLED 275
           LQP  + + N L R   QN +   +   ++L  ++ +   N R    +I+ + KE  ++D
Sbjct: 243 LQPDVVTY-NTLARAYAQNGETS-RAEGMILEMQNNRVMPNERTCGIIINGYCKEGKMKD 300

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A R L +M   G+ P++V    L+  +    + D   EA   +   G +PD   +++++ 
Sbjct: 301 ALRFLYRMRNYGVHPNLVIFNSLIKGFLDITDTDGVDEALTLMEEFGVKPDVVTFSTIMN 360

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
           A+ + G       + D M+ +GIE     +  L + + + G+   A  +   M     QP
Sbjct: 361 AWSSVGLMDKCQEIFDDMVKAGIEPDIHAFSILAKGYVRAGEPEKAESLLTAMGKSGVQP 420

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
            +   T ++  +  AG  + A   ++ M  +G  P+ +   ++I  YG+     KA  LL
Sbjct: 421 NVVIFTTIISGWCSAGKMEYASRVYEKMCEMGICPNLKTFETLIWGYGEAKEPQKAEELL 480

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +E+ G  P  +T  ++ D    L L NEA+++   + E
Sbjct: 481 QIMEQKGVAPVKSTIQLVADAWHALGLANEAKRIKNDVEE 520



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/323 (21%), Positives = 129/323 (39%), Gaps = 40/323 (12%)

Query: 230 DRLREQNTQLYFKVAE---LVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNEN 286
           D+L+  +T +  ++     + L   S +T VR  +KL++   ++   ++A+ I   + E 
Sbjct: 42  DQLQSVSTSMDSQIQSRCLVCLGNNSCRT-VRSRTKLMNILIEKGKPQEAQLIFNSLTEE 100

Query: 287 GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLG 346
           G  P ++T T L+   ++             L  +G +PD   +N+MI A+  +G  K  
Sbjct: 101 GHRPTLITYTTLLAALTRQKRFKSIPSLISKLEKNGLKPDSVFFNAMINAFSESGNVKEA 160

Query: 347 MSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA 406
           M +   M   G                                    +PT  +   L++ 
Sbjct: 161 MKIFRKMKDRGC-----------------------------------KPTTSTFNTLIKG 185

Query: 407 YGQAGDPDQARSNFDYMIRLGH-KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
           YG AG P++     D M +  + KP+DR   S+I A+  K  + +A N++ ++   G +P
Sbjct: 186 YGNAGMPEECLKLLDLMSQEENVKPNDRTFNSLIRAWCNKKRITEAWNVVYKMAASGLQP 245

Query: 466 GPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
              TY  L     +    + AE ++ ++      P  +    + + Y + G  K AL+ L
Sbjct: 246 DVVTYNTLARAYAQNGETSRAEGMILEMQNNRVMPNERTCGIIINGYCKEGKMKDALRFL 305

Query: 526 GFLEAKKEQMGPDDFERIINGLL 548
             +           F  +I G L
Sbjct: 306 YRMRNYGVHPNLVIFNSLIKGFL 328


>gi|449467657|ref|XP_004151539.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Cucumis sativus]
          Length = 637

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 108/412 (26%), Positives = 179/412 (43%), Gaps = 23/412 (5%)

Query: 170 EKIHERGEMILPE-EPKPITGKCKLITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWIN 227
           EKIHE    I  E    P T     +      LE+ +    L  E KE  L P+   +  
Sbjct: 211 EKIHELYNEICSEGNCSPDTITYSALISAFGKLERYDFAFRLFDEMKENGLHPTEKIYTT 270

Query: 228 LLDRLREQNTQLYFKV----AELVLSEE----SFQTNVRDYSKLIDAHAKENCLEDAERI 279
           +L         +YFK+    A L L EE         V  Y++LI    K   ++DA  +
Sbjct: 271 IL--------AMYFKLNKVEAALRLVEEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSL 322

Query: 280 LKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339
              M ++G  PD+V    L+++  +AG L+ A + F  + S    P+   YN++I A   
Sbjct: 323 FFNMLKDGCKPDVVLINNLINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFE 382

Query: 340 AGQPKLGMSL-VDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398
           +  P    +L  + M  +GI  S   Y  L+  F +   V  A  +   M  + F P   
Sbjct: 383 SKAPASEAALWFEKMKANGIAPSSFTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPA 442

Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
           +   L+++ G+A   + A   F  +     +   R  A MI  +G    L  A++L  E+
Sbjct: 443 AYCSLIDSLGRAKRYEAANELFQELKENCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEM 502

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
           +K G  P   TY  L+  + R  +I+EA  L+  + E G  P  K    + +  A+ G  
Sbjct: 503 KKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGP 562

Query: 519 KKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
           K+A++   F + K+ ++ PD   +  I++ L   G  + A ++   M+ +GF
Sbjct: 563 KRAIEM--FTKMKESEIMPDAVSYNTILSCLSRAGMFEMAAKLMREMKLKGF 612



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 98/221 (44%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LID   K N +E A  +L++M+E G  P       L+    +A   + A E F+ L+
Sbjct: 409 YAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQELK 468

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
            +  +   +VY  MI  + N G+    + L   M   G       Y AL+    + G + 
Sbjct: 469 ENCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEMKKLGCSPDVYTYNALMSGMIRAGMID 528

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  +   MR     P ++S  +++    + G P +A   F  M      PD     +++
Sbjct: 529 EAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKESEIMPDAVSYNTIL 588

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
           +   +  + + A  L+ E++  GFE    TY+ +++ +G++
Sbjct: 589 SCLSRAGMFEMAAKLMREMKLKGFEYDSITYSSILEAVGKV 629



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 84/193 (43%), Gaps = 4/193 (2%)

Query: 220 PSRIDWINLLDRLREQNTQLYFKVAELV--LSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           P    + +L+D L     + Y    EL   L E   +++ R Y+ +I        L DA 
Sbjct: 439 PCPAAYCSLIDSL--GRAKRYEAANELFQELKENCGRSSARVYAVMIKHFGNCGRLSDAV 496

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
            +  +M + G  PD+ T   L+    +AG +D A     ++R +G  PD K +N ++   
Sbjct: 497 DLFCEMKKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRNMRENGCTPDIKSHNIILNGL 556

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
              G PK  + +   M  S I      Y  +L   ++ G    A ++   M+++ F+   
Sbjct: 557 AKTGGPKRAIEMFTKMKESEIMPDAVSYNTILSCLSRAGMFEMAAKLMREMKLKGFEYDS 616

Query: 398 ESCTLLVEAYGQA 410
            + + ++EA G+ 
Sbjct: 617 ITYSSILEAVGKV 629


>gi|410109923|gb|AFV61041.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           hederifolia]
          Length = 431

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 122/261 (46%), Gaps = 6/261 (2%)

Query: 218 LQPSRIDWINLLD---RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           L+PS + +  L++   RL + N     K A L       Q +V  YS LI+   KE+ ++
Sbjct: 173 LRPSVVSYNTLMNGYIRLGDLNEGFRLKSAMLA---SGVQPDVYTYSVLINGLCKESKMD 229

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           DA  +  +M   G++P+ VT T L+  + K G +D A E ++ + S    PD   YN++I
Sbjct: 230 DANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQCLLPDLITYNTLI 289

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
                 G  K    L+D M   G++  +  Y  L+    + GD+  A +    M  E  +
Sbjct: 290 YGLXKKGDLKQAHDLIDEMSMKGLKPDKFTYXTLIDGCCKEGDLDTAFEHRKRMIQENIR 349

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
               + T L+    Q G    A      M+ +G KPDDR    +I  + KK  + K   L
Sbjct: 350 LDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDDRTYTMIINEFCKKGDVWKGSKL 409

Query: 455 LLELEKDGFEPGPATYTVLVD 475
           L E+++DG  P   TY VL++
Sbjct: 410 LKEMQRDGHVPSVVTYNVLMN 430



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 86/191 (45%)

Query: 285 ENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPK 344
           E G    +    +L+H + K G++  A+  F+++   G +P    YN+++  Y+  G   
Sbjct: 135 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLN 194

Query: 345 LGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
            G  L   M+ SG++     Y  L+    +   +  A ++ + M ++   P   + T L+
Sbjct: 195 EGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLI 254

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
           + + + G  D A   +  M+     PD     ++I    KK  L +A +L+ E+   G +
Sbjct: 255 DGHCKNGRVDLAMEIYKQMLSQCLLPDLITYNTLIYGLXKKGDLKQAHDLIDEMSMKGLK 314

Query: 465 PGPATYTVLVD 475
           P   TY  L+D
Sbjct: 315 PDKFTYXTLID 325



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 55/267 (20%), Positives = 111/267 (41%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E  +  ++  ++ L+    K+  +  A+ +   + + G+ P +V+   L++ Y + G+L+
Sbjct: 135 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLN 194

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
                  ++ + G QPD   Y+ +I       +      L D M+  G+  +   +  L+
Sbjct: 195 EGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLI 254

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               + G V  A +I   M  +   P L +   L+    + GD  QA    D M   G K
Sbjct: 255 DGHCKNGRVDLAMEIYKQMLSQCLLPDLITYNTLIYGLXKKGDLKQAHDLIDEMSMKGLK 314

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     ++I    K+  LD A      + ++        YT L+  L +     +AE++
Sbjct: 315 PDKFTYXTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKM 374

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAG 516
           L ++  +G  P  +    + + + + G
Sbjct: 375 LREMLSVGLKPDDRTYTMIINEFCKKG 401


>gi|357150350|ref|XP_003575429.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g16890, mitochondrial-like [Brachypodium distachyon]
          Length = 684

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 114/243 (46%), Gaps = 1/243 (0%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           +   + V  Y+ +ID   K   ++ A  I+K+M E G++P++VT   L+  YSK GN+  
Sbjct: 415 DGLLSGVTSYNMVIDCFVKAGAVDKAAEIIKEMREKGVLPNLVTFNTLISGYSKLGNVHN 474

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           AK   + L  HG  PD   + S+I    +  Q        + M   G+  +   Y  L+ 
Sbjct: 475 AKAVLKMLMEHGLIPDIITFTSLINGLCHTHQLDDAFDCFNEMAEWGVRPNAHTYNVLMH 534

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
           +    G V  A  + N M+ +   P   S    + ++ +    D+AR+ F+ M+RLG  P
Sbjct: 535 ALCSAGHVNKAIDLLNKMKKDGITPDAYSFNAPILSFCRMKKVDKARNIFNAMLRLGVVP 594

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGP-ATYTVLVDWLGRLQLINEAEQL 489
           D+    S+I A   +  +D+A  +LL +E  G       T+  +V  L +    ++A QL
Sbjct: 595 DNYTYNSLIKALCDERRIDEAKEILLLMESSGSSATTHHTHLPIVSALTKTGQFSKAGQL 654

Query: 490 LGK 492
           + K
Sbjct: 655 MNK 657



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 99/215 (46%)

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A   LK+M  +G++  + +  +++  + KAG +D+A E  + +R  G  P+   +N++I 
Sbjct: 405 ANHYLKRMVLDGLLSGVTSYNMVIDCFVKAGAVDKAAEIIKEMREKGVLPNLVTFNTLIS 464

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
            Y   G      +++ M++  G+      + +L+        +  A    N M     +P
Sbjct: 465 GYSKLGNVHNAKAVLKMLMEHGLIPDIITFTSLINGLCHTHQLDDAFDCFNEMAEWGVRP 524

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
              +  +L+ A   AG  ++A    + M + G  PD     + I ++ +   +DKA N+ 
Sbjct: 525 NAHTYNVLMHALCSAGHVNKAIDLLNKMKKDGITPDAYSFNAPILSFCRMKKVDKARNIF 584

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
             + + G  P   TY  L+  L   + I+EA+++L
Sbjct: 585 NAMLRLGVVPDNYTYNSLIKALCDERRIDEAKEIL 619



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 125/313 (39%), Gaps = 15/313 (4%)

Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338
           + KKMN  G + D     ++V    K   L       +     G  P   VY  +I + +
Sbjct: 338 VTKKMNSRGYLLDNAIFGIVVSCAVKCLELSDLCGLLDDFVKKGGNPGFDVYIMVIKSLL 397

Query: 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398
                      +  M+  G+      Y  ++  F + G V  A +I   MR +   P L 
Sbjct: 398 GCKSSSKANHYLKRMVLDGLLSGVTSYNMVIDCFVKAGAVDKAAEIIKEMREKGVLPNLV 457

Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
           +   L+  Y + G+   A++    ++  G  PD     S+I      + LD A +   E+
Sbjct: 458 TFNTLISGYSKLGNVHNAKAVLKMLMEHGLIPDIITFTSLINGLCHTHQLDDAFDCFNEM 517

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP---PFKIQV-SLCDMYAR 514
            + G  P   TY VL+  L     +N+A  LL K+ + G  P    F   + S C M   
Sbjct: 518 AEWGVRPNAHTYNVLMHALCSAGHVNKAIDLLNKMKKDGITPDAYSFNAPILSFCRM--- 574

Query: 515 AGIEKKALQALGFLEAK-KEQMGPDD--FERIINGLLAGGFLQDAQRVHGLMEAQGFAA- 570
               KK  +A     A  +  + PD+  +  +I  L     + +A+ +  LME+ G +A 
Sbjct: 575 ----KKVDKARNIFNAMLRLGVVPDNYTYNSLIKALCDERRIDEAKEILLLMESSGSSAT 630

Query: 571 SERLKVALISSQT 583
           +    + ++S+ T
Sbjct: 631 THHTHLPIVSALT 643



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/325 (20%), Positives = 123/325 (37%), Gaps = 39/325 (12%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH------------ 300
            + NV  Y+ L+D        EDA  +   M E G+ P+  +   LVH            
Sbjct: 242 IRPNVFTYTMLVDGFCNAGRPEDAVHVFDTMKEKGVSPNEASYRTLVHGAFRCLGRHKAY 301

Query: 301 ---------------------MYSKAGNLDRAKEAFE---SLRSHGFQPDKKVYNSMIMA 336
                                +Y  + N + AKE  E    + S G+  D  ++  ++  
Sbjct: 302 VMLTEWLGREPPPHHSAWQCMLYCLSKN-EMAKEVVEVTKKMNSRGYLLDNAIFGIVVSC 360

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
            V   +      L+D  +  G     ++Y+ +++S   C     A      M ++     
Sbjct: 361 AVKCLELSDLCGLLDDFVKKGGNPGFDVYIMVIKSLLGCKSSSKANHYLKRMVLDGLLSG 420

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           + S  ++++ + +AG  D+A      M   G  P+     ++I+ Y K   +  A  +L 
Sbjct: 421 VTSYNMVIDCFVKAGAVDKAAEIIKEMREKGVLPNLVTFNTLISGYSKLGNVHNAKAVLK 480

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
            L + G  P   T+T L++ L     +++A     +++E G  P       L      AG
Sbjct: 481 MLMEHGLIPDIITFTSLINGLCHTHQLDDAFDCFNEMAEWGVRPNAHTYNVLMHALCSAG 540

Query: 517 IEKKALQALGFLEAKKEQMGPDDFE 541
              KA+  L   + KK+ + PD + 
Sbjct: 541 HVNKAIDLLN--KMKKDGITPDAYS 563



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 80/178 (44%)

Query: 323 FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAG 382
           F  D  V  ++  A    G   L  +LV  +   G E SEE+  AL+ S+ + G  + A 
Sbjct: 102 FARDASVRRALEDALWRRGPAVLSAALVAEVRGCGCEVSEELLRALIASWGRLGLAQYAH 161

Query: 383 QITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAY 442
           ++   M     +P+      L+ A  +AG  D A   F  M   G +PD     +++   
Sbjct: 162 EVFVQMPRLGLRPSTAVYNALIVASVRAGAVDTAYLRFQQMPADGCQPDCFTYNTLVHGV 221

Query: 443 GKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
            ++ ++D+AL L+ ++E  G  P   TYT+LVD         +A  +   + E G +P
Sbjct: 222 CQRGIIDEALRLVRQMEGAGIRPNVFTYTMLVDGFCNAGRPEDAVHVFDTMKEKGVSP 279



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 75/182 (41%), Gaps = 18/182 (9%)

Query: 298 LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG 357
           L+  + + G    A E F  +   G +P   VYN++I+A V AG           M   G
Sbjct: 147 LIASWGRLGLAQYAHEVFVQMPRLGLRPSTAVYNALIVASVRAGAVDTAYLRFQQMPADG 206

Query: 358 IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
            +     Y  L+    Q G +  A ++   M     +P + + T+LV+ +  AG P+ A 
Sbjct: 207 CQPDCFTYNTLVHGVCQRGIIDEALRLVRQMEGAGIRPNVFTYTMLVDGFCNAGRPEDAV 266

Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
             FD M   G  P++       A+Y  + L+  A   L   +          Y +L +WL
Sbjct: 267 HVFDTMKEKGVSPNE-------ASY--RTLVHGAFRCLGRHK---------AYVMLTEWL 308

Query: 478 GR 479
           GR
Sbjct: 309 GR 310



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 65/312 (20%), Positives = 124/312 (39%), Gaps = 10/312 (3%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI A  +   ++ A    ++M  +G  PD  T   LVH   + G +D A      + 
Sbjct: 179 YNALIVASVRAGAVDTAYLRFQQMPADGCQPDCFTYNTLVHGVCQRGIIDEALRLVRQME 238

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +P+   Y  ++  + NAG+P+  + + D M   G+  +E  Y  L+    +C    
Sbjct: 239 GAGIRPNVFTYTMLVDGFCNAGRPEDAVHVFDTMKEKGVSPNEASYRTLVHGAFRCLGRH 298

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  +       E  P   +   ++    +     +       M   G+  D+     ++
Sbjct: 299 KAYVMLTEWLGREPPPHHSAWQCMLYCLSKNEMAKEVVEVTKKMNSRGYLLDNAIFGIVV 358

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
           +   K   L     LL +  K G  PG   Y +++  L   +  ++A   L ++   G  
Sbjct: 359 SCAVKCLELSDLCGLLDDFVKKGGNPGFDVYIMVIKSLLGCKSSSKANHYLKRMVLDGLL 418

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQ 557
                   + D + +AG   KA + +   E +++ + P+   F  +I+G    G + +A+
Sbjct: 419 SGVTSYNMVIDCFVKAGAVDKAAEIIK--EMREKGVLPNLVTFNTLISGYSKLGNVHNAK 476

Query: 558 RV------HGLM 563
            V      HGL+
Sbjct: 477 AVLKMLMEHGLI 488



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 65/140 (46%), Gaps = 1/140 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           ++E   + N   Y+ L+ A      +  A  +L KM ++GI PD  +    +  + +   
Sbjct: 517 MAEWGVRPNAHTYNVLMHALCSAGHVNKAIDLLNKMKKDGITPDAYSFNAPILSFCRMKK 576

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE-RSEEIYL 366
           +D+A+  F ++   G  PD   YNS+I A  +  +      ++ +M +SG    +   +L
Sbjct: 577 VDKARNIFNAMLRLGVVPDNYTYNSLIKALCDERRIDEAKEILLLMESSGSSATTHHTHL 636

Query: 367 ALLRSFAQCGDVRGAGQITN 386
            ++ +  + G    AGQ+ N
Sbjct: 637 PIVSALTKTGQFSKAGQLMN 656



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/127 (21%), Positives = 61/127 (48%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           +L E     ++  ++ LI+     + L+DA     +M E G+ P+  T  VL+H    AG
Sbjct: 481 MLMEHGLIPDIITFTSLINGLCHTHQLDDAFDCFNEMAEWGVRPNAHTYNVLMHALCSAG 540

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           ++++A +    ++  G  PD   +N+ I+++    +     ++ + M+  G+      Y 
Sbjct: 541 HVNKAIDLLNKMKKDGITPDAYSFNAPILSFCRMKKVDKARNIFNAMLRLGVVPDNYTYN 600

Query: 367 ALLRSFA 373
           +L+++  
Sbjct: 601 SLIKALC 607



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 63/144 (43%)

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           L+ ++G+ G    A   F  M RLG +P      ++I A  +   +D A     ++  DG
Sbjct: 147 LIASWGRLGLAQYAHEVFVQMPRLGLRPSTAVYNALIVASVRAGAVDTAYLRFQQMPADG 206

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522
            +P   TY  LV  + +  +I+EA +L+ ++   G  P       L D +  AG  + A+
Sbjct: 207 CQPDCFTYNTLVHGVCQRGIIDEALRLVRQMEGAGIRPNVFTYTMLVDGFCNAGRPEDAV 266

Query: 523 QALGFLEAKKEQMGPDDFERIING 546
                ++ K        +  +++G
Sbjct: 267 HVFDTMKEKGVSPNEASYRTLVHG 290


>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
          Length = 826

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 117/251 (46%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E  F  +   Y+ LI    KE  +E+  ++  +M + GI PD  T  +L+H   + G LD
Sbjct: 519 ERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLD 578

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A   +   +S    P+   Y  MI  Y  A + + G  L   ++T  +E +  +Y  L+
Sbjct: 579 EAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLI 638

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
           R++ + G+   A ++ + MR +   PT  + + L+      G  + A+   D M + G  
Sbjct: 639 RAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLL 698

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           P+  C  ++I  Y K   +DK +N+L E+      P   TYTV++D   +   +  A +L
Sbjct: 699 PNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKL 758

Query: 490 LGKISELGEAP 500
           L ++   G  P
Sbjct: 759 LHEMVGKGIVP 769



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/309 (20%), Positives = 130/309 (42%)

Query: 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320
           + L+    KE    DA  +  ++ E G   ++VT+  L+H   K GN+  A    + +  
Sbjct: 460 TTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLE 519

Query: 321 HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRG 380
            GF  DK  YN++I      G+ + G  L   M+  GIE     Y  L+    + G +  
Sbjct: 520 RGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDE 579

Query: 381 AGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIA 440
           A  + N  +  +  P + +  ++++ Y +A   ++    F  ++    + +     ++I 
Sbjct: 580 AVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIR 639

Query: 441 AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
           AY +     +A  L  ++   G  P  ATY+ L+  +  +  + +A+ L+ ++ + G  P
Sbjct: 640 AYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLP 699

Query: 501 PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVH 560
                 +L   Y + G   K +  L  + +         +  +I+G    G ++ A ++ 
Sbjct: 700 NVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLL 759

Query: 561 GLMEAQGFA 569
             M  +G  
Sbjct: 760 HEMVGKGIV 768



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/336 (20%), Positives = 132/336 (39%), Gaps = 7/336 (2%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L+ +     V+  + L+ +  K N LE +  + + M + G+ PD+   +  ++ + K G 
Sbjct: 203 LANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMRQ-GVSPDVYLFSTAINAFCKGGK 261

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           ++ A + F  +   G  P+   YN++I      G         + M+  G+  +   Y  
Sbjct: 262 VEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSV 321

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAY---GQAGDPDQARSNFDYMI 424
           L+    +      A  +      + F P       L++ Y   G  GD  + R +   M+
Sbjct: 322 LINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGD---MV 378

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
             G  P+     S+I  + K   +++A  +L E+   GF   P  +T ++ WL       
Sbjct: 379 SKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFE 438

Query: 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERII 544
            A + L ++      P   +  +L     + G    A++    L  K           +I
Sbjct: 439 SALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALI 498

Query: 545 NGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
           +GL   G +Q+A R+   M  +GF   +     LIS
Sbjct: 499 HGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLIS 534



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 77/177 (43%), Gaps = 1/177 (0%)

Query: 233 REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDI 292
           R  NT   FK+ + + S+         YS LI        +EDA+ ++ +M + G++P++
Sbjct: 643 RNGNTVEAFKLHDDMRSK-GIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNV 701

Query: 293 VTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDM 352
           V  T L+  Y K G +D+     + + S+   P+K  Y  MI  Y  +G  K    L+  
Sbjct: 702 VCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHE 761

Query: 353 MITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409
           M+  GI      Y  L   F + G +    +I + M  E       + T LV  + Q
Sbjct: 762 MVGKGIVPDTVTYNVLTNGFCKEGKIEEGFKICDYMSQEGLPLDEITYTTLVHGWQQ 818



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 82/414 (19%), Positives = 159/414 (38%), Gaps = 38/414 (9%)

Query: 203 KEEDPSPLLAEWKEL-LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDY 260
           K ED   L  + ++L + P+ + + NL+  L +  N    F+  E ++ ++     +  Y
Sbjct: 261 KVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMV-KDGVNATLITY 319

Query: 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320
           S LI+   K     +A  +LK+  E G  P+ V    L+  Y K GNL  A      + S
Sbjct: 320 SVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVS 379

Query: 321 HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRG 380
            G  P+    NS+I  +   GQ +    +++ M++ G   +   +  ++           
Sbjct: 380 KGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFES 439

Query: 381 A----------------GQITNIM-----------------RIEE--FQPTLESCTLLVE 405
           A                G +T ++                 R+ E  F   L +   L+ 
Sbjct: 440 ALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIH 499

Query: 406 AYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
              + G+  +A      M+  G   D     ++I+   K+  +++   L  E+ K G EP
Sbjct: 500 GLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEP 559

Query: 466 GPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
              TY +L+  + R+  ++EA  L  +       P       + D Y +A   ++  +  
Sbjct: 560 DTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLF 619

Query: 526 GFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
             L  +  ++    +  +I      G   +A ++H  M ++G   +     +LI
Sbjct: 620 TELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLI 673



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 65/312 (20%), Positives = 131/312 (41%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  +S  I+A  K   +EDA ++   M + G+ P++VT   L+H   K GNLD A    
Sbjct: 245 DVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFK 304

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E +   G       Y+ +I   +   +     S++   +  G   +E +Y  L+  + + 
Sbjct: 305 EKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKM 364

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G++  A +I   M  +   P   +   +++ + + G  +QA    + M+  G   +    
Sbjct: 365 GNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAF 424

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I      +  + AL  L E+      P     T LV  L +    ++A +L  ++ E
Sbjct: 425 TTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLE 484

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
            G         +L     + G  ++A++ L  +  +   +    +  +I+G    G +++
Sbjct: 485 KGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEE 544

Query: 556 AQRVHGLMEAQG 567
             ++ G M  QG
Sbjct: 545 GFKLRGEMVKQG 556


>gi|125600921|gb|EAZ40497.1| hypothetical protein OsJ_24952 [Oryza sativa Japonica Group]
          Length = 766

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 151/343 (44%), Gaps = 40/343 (11%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG------------- 306
           Y+ L+ A ++     DA  + ++M ++G+ P IVT  V++H+YSK               
Sbjct: 157 YTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVELVASM 216

Query: 307 -----NLDR------------------AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343
                  DR                  A + F+ +++ GF+PDK  +NS++  Y  A + 
Sbjct: 217 KEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRH 276

Query: 344 KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403
              + ++  M   G   S   Y +L+ S+ + G +  A  +   M ++  +P + + T L
Sbjct: 277 DEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTL 336

Query: 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGF 463
           +    +AG  D A   +D M+R G KP+     ++I  +G +    + + +  E    GF
Sbjct: 337 ISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGF 396

Query: 464 EPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
            P   T+  L+   G+  L +E   +  ++ + G  P     VSL   Y+R G+   A+Q
Sbjct: 397 VPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQ 456

Query: 524 ALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLME 564
              +    +  + PD   +  +++ L  GG  + A+++   ME
Sbjct: 457 I--YKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEME 497



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 139/321 (43%), Gaps = 15/321 (4%)

Query: 208 SPLLAEWKELLQ-----------PSRIDWINLLDRLREQNTQLYFKVAELV--LSEESFQ 254
           S +   WKE+++           P R  +  L+   R +   LY + A++   +    F+
Sbjct: 200 SKMAVPWKEVVELVASMKEHGVAPDRYTYNTLISCCRRR--ALYKEAAQVFDEMKASGFE 257

Query: 255 TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA 314
            +   ++ L+D + K    ++A  ++++M   G  P +VT   L+  Y K G L++A   
Sbjct: 258 PDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVAL 317

Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
            + +   G +PD   Y ++I     AG+    +   D M+ +G + +   Y AL++    
Sbjct: 318 KQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGV 377

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
            G       + +  R   F P + +   L+  +GQ G   +    F  M + G+ P+   
Sbjct: 378 RGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDT 437

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
             S+I++Y +  L D A+ +   + + G  P  +TY  ++  L R     +AE+L  ++ 
Sbjct: 438 YVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEME 497

Query: 495 ELGEAPPFKIQVSLCDMYARA 515
           E    P      SL   YA A
Sbjct: 498 ERDCKPDEYSYSSLLHAYANA 518



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 143/325 (44%), Gaps = 5/325 (1%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLS--EESFQTNVRDYSKLIDAHAKENCLED 275
           +QP+ + + N++  +  +    + +V ELV S  E     +   Y+ LI    +    ++
Sbjct: 185 VQPAIVTY-NVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYTYNTLISCCRRRALYKE 243

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A ++  +M  +G  PD VT   L+ +Y KA   D A E  + +   G  P    YNS+I 
Sbjct: 244 AAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLIS 303

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
           +YV  G  +  ++L   M   G++     Y  L+    + G +  A    + M     +P
Sbjct: 304 SYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKP 363

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
            L +   L++ +G  G   +  + FD     G  PD     +++A +G+  L  +   + 
Sbjct: 364 NLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVF 423

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
            E++K G+ P   TY  L+    R  L + A Q+  ++ E G  P      ++    AR 
Sbjct: 424 KEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARG 483

Query: 516 GIEKKALQALGFLEAKKEQMGPDDF 540
           G  ++A +   F E ++    PD++
Sbjct: 484 GRWEQAEKL--FAEMEERDCKPDEY 506



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 125/300 (41%), Gaps = 11/300 (3%)

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP-KLGMS 348
           PD    T LV  +S+AG    A   F  +   G QP    YN ++  Y     P K  + 
Sbjct: 152 PDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVE 211

Query: 349 LVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYG 408
           LV  M   G+      Y  L+    +    + A Q+ + M+   F+P   +   L++ YG
Sbjct: 212 LVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYG 271

Query: 409 QAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPA 468
           +A   D+A      M R+G  P      S+I++Y K  LL++A+ L  E+E  G +P   
Sbjct: 272 KARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVV 331

Query: 469 TYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALG-F 527
           TYT L+  L R   I+ A     ++   G  P      +L  M+   G+  K  + +  F
Sbjct: 332 TYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMH---GVRGKFPEMMAVF 388

Query: 528 LEAKKEQMGPDDFERIINGLLA----GGFLQDAQRVHGLMEAQGFAASERLKVALISSQT 583
            E +     PD      N LLA     G   +   V   M+  G+       V+LISS +
Sbjct: 389 DEFRSAGFVPDIV--TWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYS 446



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 133/317 (41%), Gaps = 4/317 (1%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           + N+  Y+ LI  H       +   +  +    G VPDIVT   L+ ++ + G       
Sbjct: 362 KPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSG 421

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            F+ ++  G+ P++  Y S+I +Y   G   L M +   M+ +GI      Y A+L + A
Sbjct: 422 VFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALA 481

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           + G    A ++   M   + +P   S + L+ AY  A   D+ ++  D +     +P + 
Sbjct: 482 RGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNW 541

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
              +++    K N L +A    LEL +            +V   G+ +++ + E++L  +
Sbjct: 542 LVKTLVLVNSKVNNLAEAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLM 601

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGG 551
            E           SL  MY+R G  +K    L   E K   + PD   +  +I      G
Sbjct: 602 KESAINLSAATYNSLMHMYSRLGDCEKCENIL--TEIKSSGVRPDRYSYNTVIYAYGRKG 659

Query: 552 FLQDAQRVHGLMEAQGF 568
            +++A R+   M+  G 
Sbjct: 660 QMKEASRLFSEMKCSGL 676



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/292 (21%), Positives = 126/292 (43%), Gaps = 35/292 (11%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  LI ++++    + A +I K+M E GI PD+ T   ++   ++ G  ++A++ F  + 
Sbjct: 438 YVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEME 497

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE-------------------- 359
               +PD+  Y+S++ AY NA +     +L D + +  IE                    
Sbjct: 498 ERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLA 557

Query: 360 RSEEIYL---------------ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
            +E+ +L               A++  + +   VR   +I ++M+      +  +   L+
Sbjct: 558 EAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLM 617

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
             Y + GD ++  +    +   G +PD     ++I AYG+K  + +A  L  E++  G +
Sbjct: 618 HMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLK 677

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
           P   TY + V       +  EA +L+  +   G  P  +   S+ + Y R G
Sbjct: 678 PDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNG 729



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 114/280 (40%), Gaps = 50/280 (17%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA---- 311
           +V  Y+ LI ++ K+  LE A  + ++M   G+ PD+VT T L+    +AG +D A    
Sbjct: 294 SVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEY 353

Query: 312 -------------------------------KEAFESLRSHGFQPDKKVYNSMIMAYVNA 340
                                             F+  RS GF PD   +N+++  +   
Sbjct: 354 DEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQN 413

Query: 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
           G       +   M  +G     + Y++L+ S+++CG    A QI   M      P + + 
Sbjct: 414 GLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTY 473

Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
             ++ A  + G  +QA   F  M     KPD+   +S++ AY     LDK   L  ++  
Sbjct: 474 NAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYS 533

Query: 461 DGFEPGPATYTVLVDWLGR-LQLINEAEQLLGKISELGEA 499
           +  EP         +WL + L L+N       K++ L EA
Sbjct: 534 ERIEPH--------NWLVKTLVLVN------SKVNNLAEA 559



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 102/237 (43%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS L+ A+A    L+  + +   +    I P       LV + SK  NL  A++AF  LR
Sbjct: 508 YSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELR 567

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
                 D  V N+M+  Y      +    ++ +M  S I  S   Y +L+  +++ GD  
Sbjct: 568 QKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCE 627

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
               I   ++    +P   S   ++ AYG+ G   +A   F  M   G KPD       +
Sbjct: 628 KCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFV 687

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
            +Y   ++ ++A+ L+  +   G +P   TY  +V+   R   + +A+  +  + +L
Sbjct: 688 KSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKLTDAKIFVSNLPQL 744



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 79/174 (45%)

Query: 244 AELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS 303
           A L L ++    ++   + ++  + K   +   E+IL  M E+ I     T   L+HMYS
Sbjct: 562 AFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYS 621

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363
           + G+ ++ +     ++S G +PD+  YN++I AY   GQ K    L   M  SG++    
Sbjct: 622 RLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVV 681

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
            Y   ++S+        A ++   M  +  +P   +   +VE Y + G    A+
Sbjct: 682 TYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKLTDAK 735


>gi|222630937|gb|EEE63069.1| hypothetical protein OsJ_17877 [Oryza sativa Japonica Group]
          Length = 702

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/384 (21%), Positives = 160/384 (41%), Gaps = 43/384 (11%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
            ++ +    N   Y+ ++ A+A    +++A  +  +M +NG VP++ T  ++  M  K  
Sbjct: 255 TMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKS 314

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
                 E  E +   G  P++  +N+M+      G       +++ M + G+E S + Y 
Sbjct: 315 RFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYN 374

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+ ++ +CG    A ++ + M    F P L +   L+    + GD   A+S    M++ 
Sbjct: 375 TLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKN 434

Query: 427 GHKPDDRCTASMIAAYGK-------------------------------KNL----LDKA 451
           G KP+D+  + ++  Y K                                N     L+  
Sbjct: 435 GFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGV 494

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
                E++  G++P    +  ++    +  L ++A ++   I + G +P      SL DM
Sbjct: 495 EKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDM 554

Query: 512 YARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
           YA++    +A + L  L  K  Q+ PD   +  +ING    G +++AQR+   M A G A
Sbjct: 555 YAKSNESWEAEKILKQL--KSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMA 612

Query: 570 ASERLKVALI----SSQTFNRQRQ 589
                   L+    S + FN  R+
Sbjct: 613 PCVVTYHTLVGGYASLEMFNEARE 636



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/326 (22%), Positives = 145/326 (44%), Gaps = 1/326 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG-NLDRAKEA 314
           +VR Y+ ++ A ++    E A ++  ++   G+VP IVT  V++ +Y + G +  R    
Sbjct: 88  DVRAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVAL 147

Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
            E +R+ G +PD    +++I A    G     ++  + +   G       Y ALL+ F +
Sbjct: 148 LEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGK 207

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
            G+   A ++   M     QP   +   L   Y +AG  ++A    D M   G  P+   
Sbjct: 208 AGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFT 267

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
             +++ AY     +D+AL L   ++K+G+ P   TY ++   LG+        ++L ++S
Sbjct: 268 YNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMS 327

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQ 554
             G  P      ++  +  + G+E    + L  +++   ++  D +  +I+     G   
Sbjct: 328 RSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRT 387

Query: 555 DAQRVHGLMEAQGFAASERLKVALIS 580
            A +++  M + GF        AL++
Sbjct: 388 YAFKMYDEMISSGFTPCLTTYNALLN 413



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 111/260 (42%)

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           V  Y+ L+    K     +A R+LK+M ++G  PD VT   L   Y++AG  + A +  +
Sbjct: 195 VVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLD 254

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
           ++ S G  P+   YN+++ AY N G+    ++L D M  +G   +   Y  +     +  
Sbjct: 255 TMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKS 314

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
                 ++   M      P   +   ++   G+ G  D      + M   G +       
Sbjct: 315 RFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYN 374

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
           ++I+AYG+      A  +  E+   GF P   TY  L++ L R    + A+ ++ K+ + 
Sbjct: 375 TLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKN 434

Query: 497 GEAPPFKIQVSLCDMYARAG 516
           G  P  +    L   YA+ G
Sbjct: 435 GFKPNDQSYSLLLQCYAKGG 454



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 108/256 (42%)

Query: 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320
           S +I A  ++  L+ A    + +   G VP +VT   L+ ++ KAGN   A    + +  
Sbjct: 164 STVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMED 223

Query: 321 HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRG 380
            G QPD   YN +   Y  AG  +     +D M + G+  +   Y  ++ ++A  G V  
Sbjct: 224 SGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDE 283

Query: 381 AGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIA 440
           A  + + M+   + P + +  L+    G+           + M R G  P+     +M+A
Sbjct: 284 ALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLA 343

Query: 441 AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
             GK+ + D    +L  ++  G E    TY  L+   GR      A ++  ++   G  P
Sbjct: 344 VCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTP 403

Query: 501 PFKIQVSLCDMYARAG 516
                 +L ++ +R G
Sbjct: 404 CLTTYNALLNVLSRQG 419



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/295 (21%), Positives = 123/295 (41%)

Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338
           +L++M   G+ PD  T++ ++    + G LD+A   FE L++ G  P    YN+++  + 
Sbjct: 147 LLEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFG 206

Query: 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398
            AG     + ++  M  SG +     Y  L  ++A+ G    A +  + M  +   P   
Sbjct: 207 KAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTF 266

Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
           +   ++ AY   G  D+A + FD M + G+ P+      +    GKK+     L +L E+
Sbjct: 267 TYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEM 326

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
            + G  P   T+  ++   G+  + +   ++L  +   G         +L   Y R G  
Sbjct: 327 SRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSR 386

Query: 519 KKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASER 573
             A +    + +         +  ++N L   G    AQ +   M   GF  +++
Sbjct: 387 TYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQ 441



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 65/291 (22%), Positives = 129/291 (44%), Gaps = 17/291 (5%)

Query: 208 SPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSE---ESFQTNVRDYSKLI 264
           +P L  +  LL        N+L R  + +T      A+ ++S+     F+ N + YS L+
Sbjct: 402 TPCLTTYNALL--------NVLSRQGDWST------AQSIVSKMLKNGFKPNDQSYSLLL 447

Query: 265 DAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQ 324
             +AK       E I K++    I P  V    LV    K   L+  ++AF+ +++ G++
Sbjct: 448 QCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYK 507

Query: 325 PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQI 384
           PD  ++NSM+  Y   G       + D +  SG+      Y +L+  +A+  +   A +I
Sbjct: 508 PDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKI 567

Query: 385 TNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGK 444
              ++  + +P + S   ++  + + G   +A+     MI  G  P      +++  Y  
Sbjct: 568 LKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYAS 627

Query: 445 KNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             + ++A  ++  +     +P   TY  +VD   + +  +EA + L +IS+
Sbjct: 628 LEMFNEAREVVNYMIHHNLKPMELTYRRVVDSYCKAKRYDEAREFLSEISD 678



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 104/230 (45%), Gaps = 2/230 (0%)

Query: 341 GQPKLGMSLVD-MMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLES 399
           GQ  +   L+D M +  G       Y  +L + ++ G    A Q+   +R +   PT+ +
Sbjct: 67  GQHDVVCDLLDEMPLPPGSRLDVRAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVT 126

Query: 400 CTLLVEAYGQAGDP-DQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
             ++++ YG+ G    +  +  + M   G +PDD   +++IAA G+  LLD+A+    +L
Sbjct: 127 YNVVLDVYGRMGRSWPRIVALLEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDL 186

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
           +  G  P   TY  L+   G+     EA ++L ++ + G  P       L   YARAG  
Sbjct: 187 KARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFF 246

Query: 519 KKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
           ++A + L  + +K        +  ++      G + +A  +   M+  G+
Sbjct: 247 EEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGY 296



 Score = 41.2 bits (95), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 41/204 (20%), Positives = 74/204 (36%), Gaps = 37/204 (18%)

Query: 402 LLVEAYGQAGDPDQARSNFDYM-IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
           ++V A G+ G  D      D M +  G + D R   +++ A  +    ++AL L  EL +
Sbjct: 58  MVVRALGREGQHDVVCDLLDEMPLPPGSRLDVRAYTTVLHALSRAGRYERALQLFAELRR 117

Query: 461 DGFEPGPATYTVLVDWLGRL------------------------------------QLIN 484
            G  P   TY V++D  GR+                                     L++
Sbjct: 118 QGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAAGVEPDDFTASTVIAACGRDGLLD 177

Query: 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERII 544
           +A      +   G  P      +L  ++ +AG   +AL+ L  +E    Q     +  + 
Sbjct: 178 QAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELA 237

Query: 545 NGLLAGGFLQDAQRVHGLMEAQGF 568
                 GF ++A +    M ++G 
Sbjct: 238 GTYARAGFFEEAAKCLDTMTSKGL 261


>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1113

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 133/288 (46%), Gaps = 2/288 (0%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           E  + +++ +S L+ A  K    E  + +L++M   G+ P+I T T+ + +  +AG +D 
Sbjct: 223 EGLKPSLKTFSALMVATGKRRDTETVKSLLEEMESLGLKPNIYTYTICIRVLGRAGRIDE 282

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A    + +   G  PD   Y  +I A   AG+    M L   M  S  +     Y+ +L 
Sbjct: 283 ACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMKASSHKPDRVTYITMLD 342

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
            F+ CGD+    +  + M  + + P + + T+LV A  +AG+ D+A    D M + G  P
Sbjct: 343 KFSDCGDLGRVKEFWSEMEADGYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLP 402

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           +     ++I+   + N LD AL+L   +E  G  P   TY + +D+ G+    ++A +  
Sbjct: 403 NLHTYNTLISGLLRVNRLDDALDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETF 462

Query: 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
            K+   G AP   I      +Y+ A + +     + F   K   + PD
Sbjct: 463 EKMKIRGIAP--NIVACNASLYSLAEMGRLREAKVIFNRLKSNGLAPD 508



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 141/317 (44%), Gaps = 10/317 (3%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ LIDA      L+DA  +  KM  +   PD VT   ++  +S  G+L R KE +
Sbjct: 298 DVVTYTVLIDALCTAGKLDDAMELFVKMKASSHKPDRVTYITMLDKFSDCGDLGRVKEFW 357

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             + + G+ PD   +  ++ A   AG       L+D+M   G+  +   Y  L+    + 
Sbjct: 358 SEMEADGYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRV 417

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD-DRC 434
             +  A  + N M      PT  +  L ++ YG++G  D+A   F+ M   G  P+   C
Sbjct: 418 NRLDDALDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVAC 477

Query: 435 TASM--IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
            AS+  +A  G+   L +A  +   L+ +G  P   TY +++    +   ++EA +LL  
Sbjct: 478 NASLYSLAEMGR---LREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSD 534

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAG 550
           +SE    P   +  SL +   +AG   +A +   F   K  ++ P    +  +I GL   
Sbjct: 535 MSENQCEPDIIVINSLINTLYKAGRVDEAWKM--FCRLKDMKLAPTVVTYNTLIAGLGKE 592

Query: 551 GFLQDAQRVHGLMEAQG 567
           G +Q A  +   M   G
Sbjct: 593 GQVQRAMELFASMTGNG 609



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 123/261 (47%)

Query: 256  NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
            +V  Y+ L+DAH K   + +   + ++M  +   P+ +T  +++    K+ +LD+A + F
Sbjct: 824  DVFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKALDLF 883

Query: 316  ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
              L S  F P    Y  ++   + +G+ +    L + M+  G   +  IY  L+  F + 
Sbjct: 884  YDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKT 943

Query: 376  GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
            GDV  A ++   M  E  +P L+S T LV    +AG  D A   F+ + + G   D    
Sbjct: 944  GDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLDSIAY 1003

Query: 436  ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
              MI   G+ + +++AL L  E++  G  P   TY  L+  LG   ++ +A +L  ++  
Sbjct: 1004 NLMIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQAGKLYEELQF 1063

Query: 496  LGEAPPFKIQVSLCDMYARAG 516
            +G  P      +L   Y+ +G
Sbjct: 1064 IGLEPNVFTYNALIRGYSMSG 1084



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 84/368 (22%), Positives = 155/368 (42%), Gaps = 7/368 (1%)

Query: 193 LITDKILSLEKEEDPSPLLAEWK-ELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEE 251
           ++ D + +  K +D   L  + K    +P R+ +I +LD+  +       K     +  +
Sbjct: 304 VLIDALCTAGKLDDAMELFVKMKASSHKPDRVTYITMLDKFSDCGDLGRVKEFWSEMEAD 363

Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311
            +  +V  ++ L++A  K   +++A  +L  M + G++P++ T   L+    +   LD A
Sbjct: 364 GYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDA 423

Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
            + F ++ + G  P    Y   I  Y  +G+    +   + M   GI  +     A L S
Sbjct: 424 LDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYS 483

Query: 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
            A+ G +R A  I N ++     P   +  ++++ Y +AG  D+A      M     +PD
Sbjct: 484 LAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPD 543

Query: 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
                S+I    K   +D+A  +   L+     P   TY  L+  LG+   +  A +L  
Sbjct: 544 IIVINSLINTLYKAGRVDEAWKMFCRLKDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFA 603

Query: 492 KISELGEAPPFKIQV-SLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLL 548
            ++  G  PP  I   ++ D   +      AL+ L   +       PD   F  II+GL+
Sbjct: 604 SMTGNG-CPPNTITFNTILDCLCKNDEVDLALKML--YKMTTMNCMPDVLTFNTIIHGLV 660

Query: 549 AGGFLQDA 556
               + DA
Sbjct: 661 IEKRVSDA 668



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/272 (22%), Positives = 116/272 (42%)

Query: 250  EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
            E   +  +  Y+ LI+     +  E A  +  +M   G  PD+ T  +L+  + K+G ++
Sbjct: 783  ELGVKPTLESYNFLIEGFLGVHNDEMAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKIN 842

Query: 310  RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
               E +E +     +P+   +N +I   V +      + L   +++     +   Y  LL
Sbjct: 843  ELFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLL 902

Query: 370  RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
                + G +  A ++   M     +P      +L+  +G+ GD + A   F  M+R G +
Sbjct: 903  DGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGIR 962

Query: 430  PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
            PD +   S++    +   +D AL+   +L++ G       Y +++D LGR   I EA  L
Sbjct: 963  PDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLDSIAYNLMIDGLGRSHRIEEALTL 1022

Query: 490  LGKISELGEAPPFKIQVSLCDMYARAGIEKKA 521
              ++   G  P      SL      AG+ ++A
Sbjct: 1023 YDEMQSRGINPDLFTYNSLILNLGVAGMVEQA 1054



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 123/302 (40%), Gaps = 40/302 (13%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y   ID + K    + A    +KM   GI P+IV     ++  ++ G L  AK  F  L+
Sbjct: 442 YILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSLAEMGRLREAKVIFNRLK 501

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           S+G  PD   YN M+  Y  AGQ    + L+  M       SE           QC    
Sbjct: 502 SNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDM-------SEN----------QC---- 540

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
                         +P +     L+    +AG  D+A   F  +  +   P      ++I
Sbjct: 541 --------------EPDIIVINSLINTLYKAGRVDEAWKMFCRLKDMKLAPTVVTYNTLI 586

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
           A  GK+  + +A+ L   +  +G  P   T+  ++D L +   ++ A ++L K++ +   
Sbjct: 587 AGLGKEGQVQRAMELFASMTGNGCPPNTITFNTILDCLCKNDEVDLALKMLYKMTTMNCM 646

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQ 557
           P     ++   +     IEK+   A+      K+ + PD      ++ G++  G ++DA 
Sbjct: 647 PDV---LTFNTIIHGLVIEKRVSDAIWLFHQMKKMLTPDCVTLCTLLPGVVKNGLMEDAF 703

Query: 558 RV 559
           ++
Sbjct: 704 KI 705



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 101/219 (46%)

Query: 282 KMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAG 341
           KM E G   +  +   L+H+  ++G    A E +  +   G +P  K ++++++A     
Sbjct: 184 KMREAGFHLNAYSYNGLIHLLLQSGLCREALEMYRRMVLEGLKPSLKTFSALMVATGKRR 243

Query: 342 QPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCT 401
             +   SL++ M + G++ +   Y   +R   + G +  A +I   M  +   P + + T
Sbjct: 244 DTETVKSLLEEMESLGLKPNIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYT 303

Query: 402 LLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD 461
           +L++A   AG  D A   F  M    HKPD     +M+  +     L +      E+E D
Sbjct: 304 VLIDALCTAGKLDDAMELFVKMKASSHKPDRVTYITMLDKFSDCGDLGRVKEFWSEMEAD 363

Query: 462 GFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
           G+ P   T+T+LV+ L +   I+EA  LL  + + G  P
Sbjct: 364 GYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLP 402



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 80/172 (46%)

Query: 260  YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
            Y+ LI+   K   +  A  + K+M   GI PD+ + T LV    +AG +D A   FE L+
Sbjct: 933  YNILINGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLK 992

Query: 320  SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
              G   D   YN MI     + + +  ++L D M + GI      Y +L+ +    G V 
Sbjct: 993  QTGLYLDSIAYNLMIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVE 1052

Query: 380  GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
             AG++   ++    +P + +   L+  Y  +G+ D A + +  M+  G  P+
Sbjct: 1053 QAGKLYEELQFIGLEPNVFTYNALIRGYSMSGNSDSAYAVYKRMMVGGCSPN 1104



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 69/308 (22%), Positives = 123/308 (39%), Gaps = 39/308 (12%)

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           D   +   M    I  D+ T  ++       G L +   AF  +R  GF  +   YN   
Sbjct: 142 DMVVVFNLMQNQIIKRDLNTYLIIFKGLFIRGGLRQTPFAFGKMREAGFHLNAYSYN--- 198

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
                         L+ +++ SG+                    R A ++   M +E  +
Sbjct: 199 -------------GLIHLLLQSGL-------------------CREALEMYRRMVLEGLK 226

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P+L++ + L+ A G+  D +  +S  + M  LG KP+       I   G+   +D+A  +
Sbjct: 227 PSLKTFSALMVATGKRRDTETVKSLLEEMESLGLKPNIYTYTICIRVLGRAGRIDEACRI 286

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
           +  +E DG  P   TYTVL+D L     +++A +L  K+      P     +++ D ++ 
Sbjct: 287 MKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMKASSHKPDRVTYITMLDKFSD 346

Query: 515 AGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572
            G   +  +    +EA  +   PD   F  ++N L   G + +A  +  +M  QG   + 
Sbjct: 347 CGDLGRVKEFWSEMEA--DGYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNL 404

Query: 573 RLKVALIS 580
                LIS
Sbjct: 405 HTYNTLIS 412



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 93/214 (43%)

Query: 260  YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
            Y  L+D   K   LE+A+ + ++M + G  P+     +L++ + K G+++ A E F+ + 
Sbjct: 898  YGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMV 957

Query: 320  SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
              G +PD K Y S++     AG+    +   + +  +G+      Y  ++    +   + 
Sbjct: 958  REGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLDSIAYNLMIDGLGRSHRIE 1017

Query: 380  GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
             A  + + M+     P L +   L+   G AG  +QA   ++ +  +G +P+     ++I
Sbjct: 1018 EALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQAGKLYEELQFIGLEPNVFTYNALI 1077

Query: 440  AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVL 473
              Y      D A  +   +   G  P   T+  L
Sbjct: 1078 RGYSMSGNSDSAYAVYKRMMVGGCSPNTGTFAQL 1111



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/148 (20%), Positives = 69/148 (46%)

Query: 248  LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
            +  E  + +++ Y+ L+    +   ++DA    +K+ + G+  D +   +++    ++  
Sbjct: 956  MVREGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLDSIAYNLMIDGLGRSHR 1015

Query: 308  LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            ++ A   ++ ++S G  PD   YNS+I+    AG  +    L + +   G+E +   Y A
Sbjct: 1016 IEEALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQAGKLYEELQFIGLEPNVFTYNA 1075

Query: 368  LLRSFAQCGDVRGAGQITNIMRIEEFQP 395
            L+R ++  G+   A  +   M +    P
Sbjct: 1076 LIRGYSMSGNSDSAYAVYKRMMVGGCSP 1103


>gi|115473111|ref|NP_001060154.1| Os07g0590600 [Oryza sativa Japonica Group]
 gi|34393454|dbj|BAC82993.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113611690|dbj|BAF22068.1| Os07g0590600 [Oryza sativa Japonica Group]
          Length = 784

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 151/343 (44%), Gaps = 40/343 (11%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG------------- 306
           Y+ L+ A ++     DA  + ++M ++G+ P IVT  V++H+YSK               
Sbjct: 175 YTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVELVASM 234

Query: 307 -----NLDR------------------AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343
                  DR                  A + F+ +++ GF+PDK  +NS++  Y  A + 
Sbjct: 235 KEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRH 294

Query: 344 KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403
              + ++  M   G   S   Y +L+ S+ + G +  A  +   M ++  +P + + T L
Sbjct: 295 DEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTL 354

Query: 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGF 463
           +    +AG  D A   +D M+R G KP+     ++I  +G +    + + +  E    GF
Sbjct: 355 ISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGF 414

Query: 464 EPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
            P   T+  L+   G+  L +E   +  ++ + G  P     VSL   Y+R G+   A+Q
Sbjct: 415 VPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQ 474

Query: 524 ALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLME 564
              +    +  + PD   +  +++ L  GG  + A+++   ME
Sbjct: 475 I--YKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEME 515



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 139/321 (43%), Gaps = 15/321 (4%)

Query: 208 SPLLAEWKELLQ-----------PSRIDWINLLDRLREQNTQLYFKVAELV--LSEESFQ 254
           S +   WKE+++           P R  +  L+   R +   LY + A++   +    F+
Sbjct: 218 SKMAVPWKEVVELVASMKEHGVAPDRYTYNTLISCCRRR--ALYKEAAQVFDEMKASGFE 275

Query: 255 TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA 314
            +   ++ L+D + K    ++A  ++++M   G  P +VT   L+  Y K G L++A   
Sbjct: 276 PDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVAL 335

Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
            + +   G +PD   Y ++I     AG+    +   D M+ +G + +   Y AL++    
Sbjct: 336 KQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGV 395

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
            G       + +  R   F P + +   L+  +GQ G   +    F  M + G+ P+   
Sbjct: 396 RGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDT 455

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
             S+I++Y +  L D A+ +   + + G  P  +TY  ++  L R     +AE+L  ++ 
Sbjct: 456 YVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEME 515

Query: 495 ELGEAPPFKIQVSLCDMYARA 515
           E    P      SL   YA A
Sbjct: 516 ERDCKPDEYSYSSLLHAYANA 536



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 143/325 (44%), Gaps = 5/325 (1%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLS--EESFQTNVRDYSKLIDAHAKENCLED 275
           +QP+ + + N++  +  +    + +V ELV S  E     +   Y+ LI    +    ++
Sbjct: 203 VQPAIVTY-NVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYTYNTLISCCRRRALYKE 261

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A ++  +M  +G  PD VT   L+ +Y KA   D A E  + +   G  P    YNS+I 
Sbjct: 262 AAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLIS 321

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
           +YV  G  +  ++L   M   G++     Y  L+    + G +  A    + M     +P
Sbjct: 322 SYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKP 381

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
            L +   L++ +G  G   +  + FD     G  PD     +++A +G+  L  +   + 
Sbjct: 382 NLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVF 441

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
            E++K G+ P   TY  L+    R  L + A Q+  ++ E G  P      ++    AR 
Sbjct: 442 KEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARG 501

Query: 516 GIEKKALQALGFLEAKKEQMGPDDF 540
           G  ++A +   F E ++    PD++
Sbjct: 502 GRWEQAEKL--FAEMEERDCKPDEY 524



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 125/300 (41%), Gaps = 11/300 (3%)

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP-KLGMS 348
           PD    T LV  +S+AG    A   F  +   G QP    YN ++  Y     P K  + 
Sbjct: 170 PDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVE 229

Query: 349 LVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYG 408
           LV  M   G+      Y  L+    +    + A Q+ + M+   F+P   +   L++ YG
Sbjct: 230 LVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYG 289

Query: 409 QAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPA 468
           +A   D+A      M R+G  P      S+I++Y K  LL++A+ L  E+E  G +P   
Sbjct: 290 KARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVV 349

Query: 469 TYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALG-F 527
           TYT L+  L R   I+ A     ++   G  P      +L  M+   G+  K  + +  F
Sbjct: 350 TYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMH---GVRGKFPEMMAVF 406

Query: 528 LEAKKEQMGPDDFERIINGLLA----GGFLQDAQRVHGLMEAQGFAASERLKVALISSQT 583
            E +     PD      N LLA     G   +   V   M+  G+       V+LISS +
Sbjct: 407 DEFRSAGFVPDIV--TWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYS 464



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 133/317 (41%), Gaps = 4/317 (1%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           + N+  Y+ LI  H       +   +  +    G VPDIVT   L+ ++ + G       
Sbjct: 380 KPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSG 439

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            F+ ++  G+ P++  Y S+I +Y   G   L M +   M+ +GI      Y A+L + A
Sbjct: 440 VFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALA 499

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           + G    A ++   M   + +P   S + L+ AY  A   D+ ++  D +     +P + 
Sbjct: 500 RGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNW 559

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
              +++    K N L +A    LEL +            +V   G+ +++ + E++L  +
Sbjct: 560 LVKTLVLVNSKVNNLAEAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLM 619

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGG 551
            E           SL  MY+R G  +K    L   E K   + PD   +  +I      G
Sbjct: 620 KESAINLSAATYNSLMHMYSRLGDCEKCENIL--TEIKSSGVRPDRYSYNTVIYAYGRKG 677

Query: 552 FLQDAQRVHGLMEAQGF 568
            +++A R+   M+  G 
Sbjct: 678 QMKEASRLFSEMKCSGL 694



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 64/292 (21%), Positives = 126/292 (43%), Gaps = 35/292 (11%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  LI ++++    + A +I K+M E GI PD+ T   ++   ++ G  ++A++ F  + 
Sbjct: 456 YVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEME 515

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE-------------------- 359
               +PD+  Y+S++ AY NA +     +L D + +  IE                    
Sbjct: 516 ERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLA 575

Query: 360 RSEEIYL---------------ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
            +E+ +L               A++  + +   VR   +I ++M+      +  +   L+
Sbjct: 576 EAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLM 635

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
             Y + GD ++  +    +   G +PD     ++I AYG+K  + +A  L  E++  G +
Sbjct: 636 HMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLK 695

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
           P   TY + V       +  EA +L+  +   G  P  +   S+ + Y R G
Sbjct: 696 PDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNG 747



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 114/280 (40%), Gaps = 50/280 (17%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA---- 311
           +V  Y+ LI ++ K+  LE A  + ++M   G+ PD+VT T L+    +AG +D A    
Sbjct: 312 SVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEY 371

Query: 312 -------------------------------KEAFESLRSHGFQPDKKVYNSMIMAYVNA 340
                                             F+  RS GF PD   +N+++  +   
Sbjct: 372 DEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQN 431

Query: 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
           G       +   M  +G     + Y++L+ S+++CG    A QI   M      P + + 
Sbjct: 432 GLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTY 491

Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
             ++ A  + G  +QA   F  M     KPD+   +S++ AY     LDK   L  ++  
Sbjct: 492 NAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYS 551

Query: 461 DGFEPGPATYTVLVDWLGR-LQLINEAEQLLGKISELGEA 499
           +  EP         +WL + L L+N       K++ L EA
Sbjct: 552 ERIEPH--------NWLVKTLVLVNS------KVNNLAEA 577



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 102/237 (43%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS L+ A+A    L+  + +   +    I P       LV + SK  NL  A++AF  LR
Sbjct: 526 YSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELR 585

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
                 D  V N+M+  Y      +    ++ +M  S I  S   Y +L+  +++ GD  
Sbjct: 586 QKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCE 645

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
               I   ++    +P   S   ++ AYG+ G   +A   F  M   G KPD       +
Sbjct: 646 KCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFV 705

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
            +Y   ++ ++A+ L+  +   G +P   TY  +V+   R   + +A+  +  + +L
Sbjct: 706 KSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKLTDAKIFVSNLPQL 762



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 79/174 (45%)

Query: 244 AELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS 303
           A L L ++    ++   + ++  + K   +   E+IL  M E+ I     T   L+HMYS
Sbjct: 580 AFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYS 639

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363
           + G+ ++ +     ++S G +PD+  YN++I AY   GQ K    L   M  SG++    
Sbjct: 640 RLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVV 699

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
            Y   ++S+        A ++   M  +  +P   +   +VE Y + G    A+
Sbjct: 700 TYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKLTDAK 753


>gi|357521009|ref|XP_003630793.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524815|gb|AET05269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 584

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/366 (21%), Positives = 159/366 (43%), Gaps = 29/366 (7%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L+EE  +  +  Y+ L+ A  +         +L K+ ENG+ PD +    +++ +S +G 
Sbjct: 69  LTEEGHKPTIITYTTLVAALTRLKRFNSIPSLLSKVEENGVKPDSILFNAMINAFSDSGK 128

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG-IERSEEIYL 366
           +  A + F  ++  G +P    +N++I  +   G+P   M L++MMI  G ++ +E  Y 
Sbjct: 129 VHEAMKIFRKMKECGCKPTTSTFNTLIKGFGIVGRPHEAMKLLEMMIQDGNVKPNERTYN 188

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L++++    ++  A  + + M     QP + +   L  A+ Q G+ D A      M + 
Sbjct: 189 ILIQAWCTKNELEEAWNVMHKMVNSGMQPDIVTYNTLARAFAQNGETDNAERLILKMQQY 248

Query: 427 GH--KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
            +  KP++R    +I  Y K+  + +AL  L ++++ G  P P  +  L+     +   +
Sbjct: 249 NNKVKPNERTCGIIIRGYCKEGNMTEALRFLYKMKELGVHPNPVVFNSLIKGYLDITDTD 308

Query: 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARAG--------------------IEKKALQA 524
             E+ L  + E G  P      ++ + ++ +G                    I+  ++ A
Sbjct: 309 GVEEALTLMEEFGIKPDVVTYSTIMNAWSSSGLMDNCEEIFDDMVKAEIEPDIQAYSILA 368

Query: 525 LGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTF 584
            G++ A +    PD  E ++N +   G    A  V       G+ A+ ++  AL   +  
Sbjct: 369 KGYVRAGQ----PDKAEALLNSMTKYGL--QANVVIFTTIISGWCAAGKMDCALRLYEKM 422

Query: 585 NRQRQP 590
           N    P
Sbjct: 423 NEMGTP 428



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 131/297 (44%), Gaps = 37/297 (12%)

Query: 241 FKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTST---- 296
            K+ E+++ + + + N R Y+ LI A   +N LE+A  ++ KM  +G+ PDIVT      
Sbjct: 168 MKLLEMMIQDGNVKPNERTYNILIQAWCTKNELEEAWNVMHKMVNSGMQPDIVTYNTLAR 227

Query: 297 ---------------------------------VLVHMYSKAGNLDRAKEAFESLRSHGF 323
                                            +++  Y K GN+  A      ++  G 
Sbjct: 228 AFAQNGETDNAERLILKMQQYNNKVKPNERTCGIIIRGYCKEGNMTEALRFLYKMKELGV 287

Query: 324 QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQ 383
            P+  V+NS+I  Y++          + +M   GI+     Y  ++ +++  G +    +
Sbjct: 288 HPNPVVFNSLIKGYLDITDTDGVEEALTLMEEFGIKPDVVTYSTIMNAWSSSGLMDNCEE 347

Query: 384 ITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYG 443
           I + M   E +P +++ ++L + Y +AG PD+A +  + M + G + +     ++I+ + 
Sbjct: 348 IFDDMVKAEIEPDIQAYSILAKGYVRAGQPDKAEALLNSMTKYGLQANVVIFTTIISGWC 407

Query: 444 KKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
               +D AL L  ++ + G      TY  L+   G  +   +AE+LL  + E G AP
Sbjct: 408 AAGKMDCALRLYEKMNEMGTPLNLKTYETLIWGYGEAKQPWKAEELLVTMEESGVAP 464



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 127/289 (43%), Gaps = 10/289 (3%)

Query: 265 DAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQ 324
            ++ +E C  D  R L  M  N     +++ T L+    + G    A   F SL   G +
Sbjct: 19  SSNPEETC--DESRCLICMGSNS-CQTVISRTKLMSTLIRKGKPHEAVTIFNSLTEEGHK 75

Query: 325 PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQI 384
           P    Y +++ A     +     SL+  +  +G++    ++ A++ +F+  G V  A +I
Sbjct: 76  PTIITYTTLVAALTRLKRFNSIPSLLSKVEENGVKPDSILFNAMINAFSDSGKVHEAMKI 135

Query: 385 TNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH-KPDDRCTASMIAAYG 443
              M+    +PT  +   L++ +G  G P +A    + MI+ G+ KP++R    +I A+ 
Sbjct: 136 FRKMKECGCKPTTSTFNTLIKGFGIVGRPHEAMKLLEMMIQDGNVKPNERTYNILIQAWC 195

Query: 444 KKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFK 503
            KN L++A N++ ++   G +P   TY  L     +    + AE+L+ K+ +       K
Sbjct: 196 TKNELEEAWNVMHKMVNSGMQPDIVTYNTLARAFAQNGETDNAERLILKMQQYNNK--VK 253

Query: 504 IQVSLCDMYARAGI-EKKALQALGFLEAKKE---QMGPDDFERIINGLL 548
                C +  R    E    +AL FL   KE      P  F  +I G L
Sbjct: 254 PNERTCGIIIRGYCKEGNMTEALRFLYKMKELGVHPNPVVFNSLIKGYL 302


>gi|115462947|ref|NP_001055073.1| Os05g0275000 [Oryza sativa Japonica Group]
 gi|50878350|gb|AAT85125.1| unknown protein, contains pentatricopeptide (PPR) repeat, PF01535
           [Oryza sativa Japonica Group]
 gi|113578624|dbj|BAF16987.1| Os05g0275000 [Oryza sativa Japonica Group]
 gi|215695094|dbj|BAG90285.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 793

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/384 (21%), Positives = 160/384 (41%), Gaps = 43/384 (11%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
            ++ +    N   Y+ ++ A+A    +++A  +  +M +NG VP++ T  ++  M  K  
Sbjct: 346 TMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKS 405

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
                 E  E +   G  P++  +N+M+      G       +++ M + G+E S + Y 
Sbjct: 406 RFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYN 465

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+ ++ +CG    A ++ + M    F P L +   L+    + GD   A+S    M++ 
Sbjct: 466 TLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKN 525

Query: 427 GHKPDDRCTASMIAAYGK-------------------------------KNL----LDKA 451
           G KP+D+  + ++  Y K                                N     L+  
Sbjct: 526 GFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGV 585

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
                E++  G++P    +  ++    +  L ++A ++   I + G +P      SL DM
Sbjct: 586 EKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDM 645

Query: 512 YARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
           YA++    +A + L  L  K  Q+ PD   +  +ING    G +++AQR+   M A G A
Sbjct: 646 YAKSNESWEAEKILKQL--KSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMA 703

Query: 570 ASERLKVALI----SSQTFNRQRQ 589
                   L+    S + FN  R+
Sbjct: 704 PCVVTYHTLVGGYASLEMFNEARE 727



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/326 (22%), Positives = 145/326 (44%), Gaps = 1/326 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG-NLDRAKEA 314
           +VR Y+ ++ A ++    E A ++  ++   G+VP IVT  V++ +Y + G +  R    
Sbjct: 179 DVRAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVAL 238

Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
            E +R+ G +PD    +++I A    G     ++  + +   G       Y ALL+ F +
Sbjct: 239 LEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGK 298

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
            G+   A ++   M     QP   +   L   Y +AG  ++A    D M   G  P+   
Sbjct: 299 AGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFT 358

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
             +++ AY     +D+AL L   ++K+G+ P   TY ++   LG+        ++L ++S
Sbjct: 359 YNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMS 418

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQ 554
             G  P      ++  +  + G+E    + L  +++   ++  D +  +I+     G   
Sbjct: 419 RSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRT 478

Query: 555 DAQRVHGLMEAQGFAASERLKVALIS 580
            A +++  M + GF        AL++
Sbjct: 479 YAFKMYDEMISSGFTPCLTTYNALLN 504



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 111/260 (42%)

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           V  Y+ L+    K     +A R+LK+M ++G  PD VT   L   Y++AG  + A +  +
Sbjct: 286 VVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLD 345

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
           ++ S G  P+   YN+++ AY N G+    ++L D M  +G   +   Y  +     +  
Sbjct: 346 TMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKS 405

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
                 ++   M      P   +   ++   G+ G  D      + M   G +       
Sbjct: 406 RFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYN 465

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
           ++I+AYG+      A  +  E+   GF P   TY  L++ L R    + A+ ++ K+ + 
Sbjct: 466 TLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKN 525

Query: 497 GEAPPFKIQVSLCDMYARAG 516
           G  P  +    L   YA+ G
Sbjct: 526 GFKPNDQSYSLLLQCYAKGG 545



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 108/256 (42%)

Query: 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320
           S +I A  ++  L+ A    + +   G VP +VT   L+ ++ KAGN   A    + +  
Sbjct: 255 STVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMED 314

Query: 321 HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRG 380
            G QPD   YN +   Y  AG  +     +D M + G+  +   Y  ++ ++A  G V  
Sbjct: 315 SGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDE 374

Query: 381 AGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIA 440
           A  + + M+   + P + +  L+    G+           + M R G  P+     +M+A
Sbjct: 375 ALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLA 434

Query: 441 AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
             GK+ + D    +L  ++  G E    TY  L+   GR      A ++  ++   G  P
Sbjct: 435 VCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTP 494

Query: 501 PFKIQVSLCDMYARAG 516
                 +L ++ +R G
Sbjct: 495 CLTTYNALLNVLSRQG 510



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/295 (21%), Positives = 123/295 (41%)

Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338
           +L++M   G+ PD  T++ ++    + G LD+A   FE L++ G  P    YN+++  + 
Sbjct: 238 LLEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFG 297

Query: 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398
            AG     + ++  M  SG +     Y  L  ++A+ G    A +  + M  +   P   
Sbjct: 298 KAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTF 357

Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
           +   ++ AY   G  D+A + FD M + G+ P+      +    GKK+     L +L E+
Sbjct: 358 TYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEM 417

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
            + G  P   T+  ++   G+  + +   ++L  +   G         +L   Y R G  
Sbjct: 418 SRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSR 477

Query: 519 KKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASER 573
             A +    + +         +  ++N L   G    AQ +   M   GF  +++
Sbjct: 478 TYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQ 532



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 65/291 (22%), Positives = 129/291 (44%), Gaps = 17/291 (5%)

Query: 208 SPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSE---ESFQTNVRDYSKLI 264
           +P L  +  LL        N+L R  + +T      A+ ++S+     F+ N + YS L+
Sbjct: 493 TPCLTTYNALL--------NVLSRQGDWST------AQSIVSKMLKNGFKPNDQSYSLLL 538

Query: 265 DAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQ 324
             +AK       E I K++    I P  V    LV    K   L+  ++AF+ +++ G++
Sbjct: 539 QCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYK 598

Query: 325 PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQI 384
           PD  ++NSM+  Y   G       + D +  SG+      Y +L+  +A+  +   A +I
Sbjct: 599 PDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKI 658

Query: 385 TNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGK 444
              ++  + +P + S   ++  + + G   +A+     MI  G  P      +++  Y  
Sbjct: 659 LKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYAS 718

Query: 445 KNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             + ++A  ++  +     +P   TY  +VD   + +  +EA + L +IS+
Sbjct: 719 LEMFNEAREVVNYMIHHNLKPMELTYRRVVDSYCKAKRYDEAREFLSEISD 769



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 104/230 (45%), Gaps = 2/230 (0%)

Query: 341 GQPKLGMSLVD-MMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLES 399
           GQ  +   L+D M +  G       Y  +L + ++ G    A Q+   +R +   PT+ +
Sbjct: 158 GQHDVVCDLLDEMPLPPGSRLDVRAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVT 217

Query: 400 CTLLVEAYGQAGDP-DQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
             ++++ YG+ G    +  +  + M   G +PDD   +++IAA G+  LLD+A+    +L
Sbjct: 218 YNVVLDVYGRMGRSWPRIVALLEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDL 277

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
           +  G  P   TY  L+   G+     EA ++L ++ + G  P       L   YARAG  
Sbjct: 278 KARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFF 337

Query: 519 KKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
           ++A + L  + +K        +  ++      G + +A  +   M+  G+
Sbjct: 338 EEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGY 387



 Score = 41.2 bits (95), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 41/204 (20%), Positives = 74/204 (36%), Gaps = 37/204 (18%)

Query: 402 LLVEAYGQAGDPDQARSNFDYM-IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
           ++V A G+ G  D      D M +  G + D R   +++ A  +    ++AL L  EL +
Sbjct: 149 MVVRALGREGQHDVVCDLLDEMPLPPGSRLDVRAYTTVLHALSRAGRYERALQLFAELRR 208

Query: 461 DGFEPGPATYTVLVDWLGRL------------------------------------QLIN 484
            G  P   TY V++D  GR+                                     L++
Sbjct: 209 QGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAAGVEPDDFTASTVIAACGRDGLLD 268

Query: 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERII 544
           +A      +   G  P      +L  ++ +AG   +AL+ L  +E    Q     +  + 
Sbjct: 269 QAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELA 328

Query: 545 NGLLAGGFLQDAQRVHGLMEAQGF 568
                 GF ++A +    M ++G 
Sbjct: 329 GTYARAGFFEEAAKCLDTMTSKGL 352


>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
 gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
          Length = 747

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 96/416 (23%), Positives = 179/416 (43%), Gaps = 54/416 (12%)

Query: 218 LQPSRIDWINLLDRL-RE-QNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLED 275
           L+P+ I +  +++ L RE +  ++ F + E+  ++  +  +   Y+ LI  + KE     
Sbjct: 271 LEPNLISYNVVINGLCREGRMKEISFVLTEM--NKRGYSLDEVTYNTLIKGYCKEGNFHQ 328

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A  +  +M  +G+ P ++T T L+H   KAGN++RA E  + +R  G  P+++ Y +++ 
Sbjct: 329 ALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVD 388

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
            +   G       ++  MI +G   S   Y AL+      G +  A  +   M+ +   P
Sbjct: 389 GFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTP 448

Query: 396 TLESCTLLVEAYGQAGDPDQA------------------------------RSN-----F 420
            + S + ++  + ++ D D+A                              R+      F
Sbjct: 449 DVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLF 508

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
           D M+R+G  PD+    ++I AY  +  L KA+ L  E+ + G  P   TY+VL++ L + 
Sbjct: 509 DEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQ 568

Query: 481 QLINEAEQLLGKISELGEAPP---------------FKIQVSLCDMYARAGIEKKALQAL 525
               EA++LL K+      P                FK  VSL   +   G+  +A Q  
Sbjct: 569 ARTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVF 628

Query: 526 GFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
             +  K  +     +  +I+G   GG ++ A  ++  M   GF       +AL+ +
Sbjct: 629 ESMLEKNHKPDGTAYNVMIHGHCRGGDIRKAYSLYKEMVKSGFLLHTVTVIALVKT 684



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 155/342 (45%), Gaps = 11/342 (3%)

Query: 253 FQTNVRDYSKLIDA--HAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           F   V  Y+ ++DA   +K N +  AE + K+M ++ + P++ T  +L+  +  AGNLD 
Sbjct: 165 FMPGVLSYNAVLDATIRSKRN-ISFAENVFKEMLQSQVSPNVFTYNILIRGFCLAGNLDV 223

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A   F+ +   G  P+   YN++I  Y    +   G  L+  M   G+E +   Y  ++ 
Sbjct: 224 ALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALKGLEPNLISYNVVIN 283

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
              + G ++    +   M    +     +   L++ Y + G+  QA      M+R G  P
Sbjct: 284 GLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLSP 343

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
                 S+I +  K   +++A   L ++   G  P   TYT LVD   +   +NEA ++L
Sbjct: 344 SVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVL 403

Query: 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ-MGPD--DFERIINGL 547
            ++ + G +P      +L + +  AG   K + A+  LE  KE+ + PD   +  +++G 
Sbjct: 404 KEMIDNGFSPSVVTYNALINGHCIAG---KMVDAIAVLEDMKEKGLTPDVVSYSTVLSGF 460

Query: 548 LAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQ 589
                + +A RV   M A+G         +LI  Q F  QR+
Sbjct: 461 CRSYDVDEALRVKRKMVAKGIKPDTITYSSLI--QGFCEQRR 500



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 120/279 (43%), Gaps = 18/279 (6%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E+    +V  YS ++    +   +++A R+ +KM   GI PD +T + L+  + +   
Sbjct: 441 MKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRR 500

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
              A + F+ +   G  PD+  Y ++I AY   G  +  + L + M+  G+      Y  
Sbjct: 501 TKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSV 560

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPT-------LESCT--------LLVEAYGQAGD 412
           L+    +    R A ++   +  EE  P+       +E+C+         L++ +   G 
Sbjct: 561 LINGLNKQARTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGM 620

Query: 413 PDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTV 472
             +A   F+ M+   HKPD      MI  + +   + KA +L  E+ K GF     T   
Sbjct: 621 MTEADQVFESMLEKNHKPDGTAYNVMIHGHCRGGDIRKAYSLYKEMVKSGFLLHTVTVIA 680

Query: 473 LVDWLGRLQLINEAEQLLGKI---SELGEAPPFKIQVSL 508
           LV  L +   +NE   ++  +    EL EA   K+ V +
Sbjct: 681 LVKTLHKEGKVNELNSVIANVLRSCELSEAEQAKVLVEI 719



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/339 (20%), Positives = 134/339 (39%), Gaps = 48/339 (14%)

Query: 274 EDAERILKKMNENGIVPDIVTST-----VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKK 328
           EDA  + + + E     D+  ST     ++V  YS+   +D+A       ++HGF P   
Sbjct: 114 EDASLVFRSLQE---TYDLCNSTSSVFDLVVKSYSRLCLIDKALSIVHLSQAHGFMPGVL 170

Query: 329 VYNSMIMAYVNAGQP-KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGA------ 381
            YN+++ A + + +      ++   M+ S +  +   Y  L+R F   G++  A      
Sbjct: 171 SYNAVLDATIRSKRNISFAENVFKEMLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDR 230

Query: 382 ----GQITNI-------------------------MRIEEFQPTLESCTLLVEAYGQAGD 412
               G + N+                         M ++  +P L S  +++    + G 
Sbjct: 231 MEKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALKGLEPNLISYNVVINGLCREGR 290

Query: 413 PDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTV 472
             +       M + G+  D+    ++I  Y K+    +AL +  E+ + G  P   TYT 
Sbjct: 291 MKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTS 350

Query: 473 LVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKK 532
           L+  + +   +N A + L ++   G  P  +   +L D +++ G   +A + L   E   
Sbjct: 351 LIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLK--EMID 408

Query: 533 EQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
               P    +  +ING    G + DA  V   M+ +G  
Sbjct: 409 NGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLT 447


>gi|334185431|ref|NP_188439.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|322510063|sp|Q5G1S8.2|PP241_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g18110, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 1270; Flags: Precursor
 gi|9294066|dbj|BAB02023.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642528|gb|AEE76049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1440

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 99/425 (23%), Positives = 186/425 (43%), Gaps = 45/425 (10%)

Query: 190 KCKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLS 249
           + K +TDKILSL+  +  + +L     L+Q +  D+  ++  + +++ Q   +V E +  
Sbjct: 126 RVKFLTDKILSLKSNQFVADILD--ARLVQMTPTDYCFVVKSVGQESWQRALEVFEWLNL 183

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
                 N R  + ++    + N    A  I  +  E  +   +     ++ +YS++G   
Sbjct: 184 RHWHSPNARMVAAILGVLGRWNQESLAVEIFTRA-EPTVGDRVQVYNAMMGVYSRSGKFS 242

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAG--QPKLGMSLVDMMITSGIERSEEIYLA 367
           +A+E  +++R  G  PD   +N++I A + +G   P L + L+DM+  SG+      Y  
Sbjct: 243 KAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVELLDMVRNSGLRPDAITYNT 302

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAG---------------- 411
           LL + ++  ++ GA ++   M     QP L +   ++  YG+ G                
Sbjct: 303 LLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELELKG 362

Query: 412 -DPDQARSN------------------FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             PD    N                  +  M ++G   D+    ++I  YGK+  LD AL
Sbjct: 363 FFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLAL 422

Query: 453 NLLLELEK-DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
            L  +++   G  P   TYTVL+D LG+     EA  L+ ++ ++G  P  +   +L   
Sbjct: 423 QLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALICG 482

Query: 512 YARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
           YA+AG  ++A      +   +    PD+  +  +++ LL G   + A  ++  M + G  
Sbjct: 483 YAKAGKREEAEDTFSCM--LRSGTKPDNLAYSVMLDVLLRGNETRKAWGLYRDMISDGHT 540

Query: 570 ASERL 574
            S  L
Sbjct: 541 PSYTL 545



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 134/293 (45%), Gaps = 3/293 (1%)

Query: 218 LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L+P  I +  LL    R+ N     KV E  +     Q ++  Y+ +I  + +     +A
Sbjct: 293 LRPDAITYNTLLSACSRDSNLDGAVKVFE-DMEAHRCQPDLWTYNAMISVYGRCGLAAEA 351

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
           ER+  ++   G  PD VT   L++ +++  N ++ KE ++ ++  GF  D+  YN++I  
Sbjct: 352 ERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHM 411

Query: 337 YVNAGQPKLGMSLV-DMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
           Y   GQ  L + L  DM   SG       Y  L+ S  +      A  + + M     +P
Sbjct: 412 YGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKP 471

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
           TL++ + L+  Y +AG  ++A   F  M+R G KPD+   + M+    + N   KA  L 
Sbjct: 472 TLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWGLY 531

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSL 508
            ++  DG  P    Y +++  L +    ++ ++ +  + EL    P +I   L
Sbjct: 532 RDMISDGHTPSYTLYELMILGLMKENRSDDIQKTIRDMEELCGMNPLEISSVL 584



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/255 (21%), Positives = 112/255 (43%)

Query: 260  YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
            Y+ +I+A+ K+   + AE ++  + ++G  PD+ T   L+  Y++ G  +RA+  F ++ 
Sbjct: 755  YTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMM 814

Query: 320  SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
              G  P  +  N ++ A    G+ +    +V+ +   G + S+   L +L +FA+ G++ 
Sbjct: 815  RDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIF 874

Query: 380  GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
               +I + M+   + PT+    +++E   +      A      M     K +     SM+
Sbjct: 875  EVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSML 934

Query: 440  AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
              Y       K + +   +++ G EP   TY  L+    R +   E   L+ ++  LG  
Sbjct: 935  KMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLD 994

Query: 500  PPFKIQVSLCDMYAR 514
            P      SL   + +
Sbjct: 995  PKLDTYKSLISAFGK 1009



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 113/261 (43%), Gaps = 43/261 (16%)

Query: 253  FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
            +   +R Y  +I+   K   + DAE ++ +M E     ++     ++ MY+   +  +  
Sbjct: 888  YLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTV 947

Query: 313  EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
            + ++ ++  G +PD+  YN++I+ Y    +P+ G  L+  M   G++   + Y +L+ +F
Sbjct: 948  QVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAF 1007

Query: 373  AQ--C---------------------------------GDVRGAGQITNIMRIEEFQPTL 397
             +  C                                 G    A ++  +M+    +PTL
Sbjct: 1008 GKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTL 1067

Query: 398  ESCTLLVEAYGQAGDPDQAR---SNF-DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
             +  LL+ +Y  +G+P +A    SN  D  + L   P     +S+I AY +    +  + 
Sbjct: 1068 ATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLP----YSSVIDAYLRSKDYNSGIE 1123

Query: 454  LLLELEKDGFEPGPATYTVLV 474
             LLE++K+G EP    +T  V
Sbjct: 1124 RLLEMKKEGLEPDHRIWTCFV 1144



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 66/368 (17%), Positives = 147/368 (39%), Gaps = 35/368 (9%)

Query: 256  NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM-------------- 301
            +++ ++ L+ A+A+  C E A  I   M  +G  P + +  +L+H               
Sbjct: 786  DLKTWNSLMSAYAQCGCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELYVVV 845

Query: 302  ---------------------YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNA 340
                                 +++AGN+   K+ + S+++ G+ P  ++Y  MI      
Sbjct: 846  EELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKG 905

Query: 341  GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
             + +    +V  M  +  +    I+ ++L+ +    D +   Q+   ++    +P   + 
Sbjct: 906  KRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTY 965

Query: 401  TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
              L+  Y +   P++       M  LG  P      S+I+A+GK+  L++A  L  EL  
Sbjct: 966  NTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLS 1025

Query: 461  DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKK 520
             G +   + Y  ++         ++AE+LL  +   G  P       L   Y+ +G  ++
Sbjct: 1026 KGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQE 1085

Query: 521  ALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
            A + L  L+  + ++    +  +I+  L              M+ +G     R+    + 
Sbjct: 1086 AEKVLSNLKDTEVELTTLPYSSVIDAYLRSKDYNSGIERLLEMKKEGLEPDHRIWTCFVR 1145

Query: 581  SQTFNRQR 588
            + +F++++
Sbjct: 1146 AASFSKEK 1153



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 108/219 (49%), Gaps = 4/219 (1%)

Query: 248  LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
            + E   + +   Y+ LI  + ++   E+   ++++M   G+ P + T   L+  + K   
Sbjct: 953  IKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKC 1012

Query: 308  LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            L++A++ FE L S G + D+  Y++M+    ++G       L+ MM  +GIE +      
Sbjct: 1013 LEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHL 1072

Query: 368  LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
            L+ S++  G+ + A ++ + ++  E + T    + +++AY ++ D +        M + G
Sbjct: 1073 LMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAYLRSKDYNSGIERLLEMKKEG 1132

Query: 428  HKPDDRCTASMI--AAYGKKNLLDKALNLLLELEKDGFE 464
             +PD R     +  A++ K+ +  + + LL  LE  GF+
Sbjct: 1133 LEPDHRIWTCFVRAASFSKEKI--EVMLLLKALEDIGFD 1169



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 72/346 (20%), Positives = 134/346 (38%), Gaps = 23/346 (6%)

Query: 251 ESFQTNVRDYSKLIDAH--------AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMY 302
           +  Q  +RD  +L   +         K  C + A R LK    NG   +  T   ++  Y
Sbjct: 560 DDIQKTIRDMEELCGMNPLEISSVLVKGECFDLAARQLKVAITNGYELENDTLLSILGSY 619

Query: 303 SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY--VNAGQPKLGMSLVDMMITSGIER 360
           S +G    A E  E L+ H     + +  ++I+ +  VN     L     D  +      
Sbjct: 620 SSSGRHSEAFELLEFLKEHASGSKRLITEALIVLHCKVNNLSAALDEYFADPCVHGWCFG 679

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
           S  +Y  LL           A Q+ + +R+   + +   C  +V  Y + G P+ A    
Sbjct: 680 SSTMYETLLHCCVANEHYAEASQVFSDLRLSGCEASESVCKSMVVVYCKLGFPETAHQVV 739

Query: 421 DYMIRLG-HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
           +     G H         +I AYGK+ L  KA +++  L + G  P   T+  L+    +
Sbjct: 740 NQAETKGFHFACSPMYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQ 799

Query: 480 LQLINEAEQLLGKISELGEAPPFK-IQVSLCDMYARAGIEK-----KALQALGFLEAKKE 533
                 A  +   +   G +P  + I + L  +     +E+     + LQ +GF  +K  
Sbjct: 800 CGCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSS 859

Query: 534 QMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
            +       +++     G + + ++++  M+A G+  + RL   +I
Sbjct: 860 IL------LMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMI 899



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/284 (20%), Positives = 117/284 (41%), Gaps = 9/284 (3%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  L+          +A ++   +  +G          +V +Y K G  + A +      
Sbjct: 684 YETLLHCCVANEHYAEASQVFSDLRLSGCEASESVCKSMVVVYCKLGFPETAHQVVNQAE 743

Query: 320 SHGFQ-PDKKVYNSMIMAYVNAGQPKL---GMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + GF      +Y  +I AY   G+ KL     S+V  +  SG     + + +L+ ++AQC
Sbjct: 744 TKGFHFACSPMYTDIIEAY---GKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQC 800

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G    A  I N M  +   PT+ES  +L+ A    G  ++     + +  +G K      
Sbjct: 801 GCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSI 860

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             M+ A+ +   + +   +   ++  G+ P    Y ++++ L + + + +AE ++ ++ E
Sbjct: 861 LLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEE 920

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD 539
                   I  S+  MY      KK +Q   +   K+  + PD+
Sbjct: 921 ANFKVELAIWNSMLKMYTAIEDYKKTVQV--YQRIKETGLEPDE 962


>gi|356508736|ref|XP_003523110.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Glycine max]
          Length = 680

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 133/278 (47%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E   +   R Y+ L+  + +   L+DAE ++ +M + G+ PD  T ++L+ +Y+ AG 
Sbjct: 302 IRENGLEPRTRAYNALLKGYVRTGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDVYAHAGR 361

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            + A+   + + +   QP+  V++ ++  Y + G+ +    ++  M +SG++     Y  
Sbjct: 362 WESARIVLKEMEASNVQPNSYVFSRILANYRDKGEWQKSFQVLKDMKSSGVQPDRHFYNV 421

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++ +F +   +  A      M  E   P + +   L++ + ++G  D A   F  M + G
Sbjct: 422 MIDTFGKYNCLDHAMATFERMLSEGIPPDIVTWNTLIDCHCKSGRHDMAEELFSEMQQRG 481

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
           + P       MI + G++   ++    L +++  G +P   TYT LVD  G+    ++A 
Sbjct: 482 YSPCITTYNIMINSMGEQQRWEQVTAFLSKMQSQGLQPNSITYTTLVDVYGKSGRFSDAI 541

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
           + L  +   G  P   +  +L + YA+ G+ + A+ A 
Sbjct: 542 ECLEVLKSTGFKPTSTMYNALINAYAQRGLSELAVNAF 579



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/298 (22%), Positives = 136/298 (45%)

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
            +AE + +++ ENG+ P       L+  Y + G+L  A+     +   G +PD++ Y+ +
Sbjct: 293 HEAEALFEEIRENGLEPRTRAYNALLKGYVRTGSLKDAEFVVSEMEKAGVKPDEQTYSLL 352

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           I  Y +AG+ +    ++  M  S ++ +  ++  +L ++   G+ + + Q+   M+    
Sbjct: 353 IDVYAHAGRWESARIVLKEMEASNVQPNSYVFSRILANYRDKGEWQKSFQVLKDMKSSGV 412

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
           QP      ++++ +G+    D A + F+ M+  G  PD     ++I  + K    D A  
Sbjct: 413 QPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIPPDIVTWNTLIDCHCKSGRHDMAEE 472

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
           L  E+++ G+ P   TY ++++ +G  Q   +    L K+   G  P      +L D+Y 
Sbjct: 473 LFSEMQQRGYSPCITTYNIMINSMGEQQRWEQVTAFLSKMQSQGLQPNSITYTTLVDVYG 532

Query: 514 RAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAAS 571
           ++G    A++ L  L++   +     +  +IN     G  + A     LM  +G   S
Sbjct: 533 KSGRFSDAIECLEVLKSTGFKPTSTMYNALINAYAQRGLSELAVNAFRLMTTEGLTPS 590



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 76/353 (21%), Positives = 149/353 (42%), Gaps = 9/353 (2%)

Query: 241 FKVAELVLSE---ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTV 297
            K AE V+SE      + + + YS LID +A     E A  +LK+M  + + P+    + 
Sbjct: 327 LKDAEFVVSEMEKAGVKPDEQTYSLLIDVYAHAGRWESARIVLKEMEASNVQPNSYVFSR 386

Query: 298 LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG 357
           ++  Y   G   ++ +  + ++S G QPD+  YN MI  +         M+  + M++ G
Sbjct: 387 ILANYRDKGEWQKSFQVLKDMKSSGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEG 446

Query: 358 IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
           I      +  L+    + G    A ++ + M+   + P + +  +++ + G+    +Q  
Sbjct: 447 IPPDIVTWNTLIDCHCKSGRHDMAEELFSEMQQRGYSPCITTYNIMINSMGEQQRWEQVT 506

Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
           +    M   G +P+     +++  YGK      A+  L  L+  GF+P    Y  L++  
Sbjct: 507 AFLSKMQSQGLQPNSITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNALINAY 566

Query: 478 GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE-QMG 536
            +  L   A      ++  G  P      SL + +   G +++  +A   L+  KE  + 
Sbjct: 567 AQRGLSELAVNAFRLMTTEGLTPSLLALNSLINAF---GEDRRDAEAFAVLQYMKENNIE 623

Query: 537 PD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQ 587
           PD   +  ++  L+     Q    V+  M A G     + +  L S+  + +Q
Sbjct: 624 PDVVTYTTLMKALIRVEKFQKVPAVYEEMVASGCTPDRKARAMLRSALRYMKQ 676



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 124/294 (42%), Gaps = 37/294 (12%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLV-------------------- 299
           Y+ LI A A+   +E A  ++ KM  +G  PD V  + ++                    
Sbjct: 172 YNALIGACARNGDVEKALNLMSKMRRDGYQPDFVNYSSIIQYLTRSNKIDSPILQKLYAE 231

Query: 300 ----------HM-------YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
                     H+       +SKAG+  RA       +S+G  P      ++I+A  N+G+
Sbjct: 232 IETDKIEIDGHLMNDIIVGFSKAGDPTRAMRFLAMAQSNGLNPKPSTLVAVILALGNSGR 291

Query: 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402
                +L + +  +G+E     Y ALL+ + + G ++ A  + + M     +P  ++ +L
Sbjct: 292 THEAEALFEEIRENGLEPRTRAYNALLKGYVRTGSLKDAEFVVSEMEKAGVKPDEQTYSL 351

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           L++ Y  AG  + AR     M     +P+    + ++A Y  K    K+  +L +++  G
Sbjct: 352 LIDVYAHAGRWESARIVLKEMEASNVQPNSYVFSRILANYRDKGEWQKSFQVLKDMKSSG 411

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
            +P    Y V++D  G+   ++ A     ++   G  P      +L D + ++G
Sbjct: 412 VQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIPPDIVTWNTLIDCHCKSG 465



 Score = 47.4 bits (111), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 93/214 (43%), Gaps = 20/214 (9%)

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ-------AR 417
           Y AL+ + A+ GDV  A  + + MR + +QP   + + +++   ++   D        A 
Sbjct: 172 YNALIGACARNGDVEKALNLMSKMRRDGYQPDFVNYSSIIQYLTRSNKIDSPILQKLYAE 231

Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
              D +   GH  +D     +I  + K     +A+  L   + +G  P P+T   ++  L
Sbjct: 232 IETDKIEIDGHLMND-----IIVGFSKAGDPTRAMRFLAMAQSNGLNPKPSTLVAVILAL 286

Query: 478 GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG- 536
           G     +EAE L  +I E G  P  +   +L   Y R G  K A     F+ ++ E+ G 
Sbjct: 287 GNSGRTHEAEALFEEIRENGLEPRTRAYNALLKGYVRTGSLKDA----EFVVSEMEKAGV 342

Query: 537 -PDD--FERIINGLLAGGFLQDAQRVHGLMEAQG 567
            PD+  +  +I+     G  + A+ V   MEA  
Sbjct: 343 KPDEQTYSLLIDVYAHAGRWESARIVLKEMEASN 376


>gi|125551633|gb|EAY97342.1| hypothetical protein OsI_19265 [Oryza sativa Indica Group]
          Length = 793

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/384 (21%), Positives = 160/384 (41%), Gaps = 43/384 (11%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
            ++ +    N   Y+ ++ A+A    +++A  +  +M +NG VP++ T  ++  M  K  
Sbjct: 346 TMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKS 405

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
                 E  E +   G  P++  +N+M+      G       +++ M + G+E S + Y 
Sbjct: 406 RFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYN 465

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+ ++ +CG    A ++ + M    F P L +   L+    + GD   A+S    M++ 
Sbjct: 466 TLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKN 525

Query: 427 GHKPDDRCTASMIAAYGK-------------------------------KNL----LDKA 451
           G KP+D+  + ++  Y K                                N     L+  
Sbjct: 526 GFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGV 585

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
                E++  G++P    +  ++    +  L ++A ++   I + G +P      SL DM
Sbjct: 586 EKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDM 645

Query: 512 YARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
           YA++    +A + L  L  K  Q+ PD   +  +ING    G +++AQR+   M A G A
Sbjct: 646 YAKSNESWEAEKILKQL--KSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMA 703

Query: 570 ASERLKVALI----SSQTFNRQRQ 589
                   L+    S + FN  R+
Sbjct: 704 PCVVTYHTLVGGYASLEMFNEARE 727



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/326 (22%), Positives = 145/326 (44%), Gaps = 1/326 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG-NLDRAKEA 314
           +VR Y+ ++ A ++    E A ++  ++   G+VP IVT  V++ +Y + G +  R    
Sbjct: 179 DVRAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVAL 238

Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
            E +R+ G +PD    +++I A    G     ++  + +   G       Y ALL+ F +
Sbjct: 239 LEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGK 298

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
            G+   A ++   M     QP   +   L   Y +AG  ++A    D M   G  P+   
Sbjct: 299 AGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFT 358

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
             +++ AY     +D+AL L   ++K+G+ P   TY ++   LG+        ++L ++S
Sbjct: 359 YNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMS 418

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQ 554
             G  P      ++  +  + G+E    + L  +++   ++  D +  +I+     G   
Sbjct: 419 RSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRT 478

Query: 555 DAQRVHGLMEAQGFAASERLKVALIS 580
            A +++  M + GF        AL++
Sbjct: 479 YAFKMYDEMISSGFTPCLTTYNALLN 504



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 111/260 (42%)

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           V  Y+ L+    K     +A R+LK+M ++G  PD VT   L   Y++AG  + A +  +
Sbjct: 286 VVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLD 345

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
           ++ S G  P+   YN+++ AY N G+    ++L D M  +G   +   Y  +     +  
Sbjct: 346 TMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKS 405

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
                 ++   M      P   +   ++   G+ G  D      + M   G +       
Sbjct: 406 RFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYN 465

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
           ++I+AYG+      A  +  E+   GF P   TY  L++ L R    + A+ ++ K+ + 
Sbjct: 466 TLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKN 525

Query: 497 GEAPPFKIQVSLCDMYARAG 516
           G  P  +    L   YA+ G
Sbjct: 526 GFKPNDQSYSLLLQCYAKGG 545



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 108/256 (42%)

Query: 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320
           S +I A  ++  L+ A    + +   G VP +VT   L+ ++ KAGN   A    + +  
Sbjct: 255 STVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMED 314

Query: 321 HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRG 380
            G QPD   YN +   Y  AG  +     +D M + G+  +   Y  ++ ++A  G V  
Sbjct: 315 SGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDE 374

Query: 381 AGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIA 440
           A  + + M+   + P + +  L+    G+           + M R G  P+     +M+A
Sbjct: 375 ALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLA 434

Query: 441 AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
             GK+ + D    +L  ++  G E    TY  L+   GR      A ++  ++   G  P
Sbjct: 435 VCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTP 494

Query: 501 PFKIQVSLCDMYARAG 516
                 +L ++ +R G
Sbjct: 495 CLTTYNALLNVLSRQG 510



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/295 (21%), Positives = 123/295 (41%)

Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338
           +L++M   G+ PD  T++ ++    + G LD+A   FE L++ G  P    YN+++  + 
Sbjct: 238 LLEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFG 297

Query: 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398
            AG     + ++  M  SG +     Y  L  ++A+ G    A +  + M  +   P   
Sbjct: 298 KAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTF 357

Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
           +   ++ AY   G  D+A + FD M + G+ P+      +    GKK+     L +L E+
Sbjct: 358 TYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEM 417

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
            + G  P   T+  ++   G+  + +   ++L  +   G         +L   Y R G  
Sbjct: 418 SRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSR 477

Query: 519 KKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASER 573
             A +    + +         +  ++N L   G    AQ +   M   GF  +++
Sbjct: 478 TYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQ 532



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 65/291 (22%), Positives = 129/291 (44%), Gaps = 17/291 (5%)

Query: 208 SPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSE---ESFQTNVRDYSKLI 264
           +P L  +  LL        N+L R  + +T      A+ ++S+     F+ N + YS L+
Sbjct: 493 TPCLTTYNALL--------NVLSRQGDWST------AQSIVSKMLKNGFKPNDQSYSLLL 538

Query: 265 DAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQ 324
             +AK       E I K++    I P  V    LV    K   L+  ++AF+ +++ G++
Sbjct: 539 QCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYK 598

Query: 325 PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQI 384
           PD  ++NSM+  Y   G       + D +  SG+      Y +L+  +A+  +   A +I
Sbjct: 599 PDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKI 658

Query: 385 TNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGK 444
              ++  + +P + S   ++  + + G   +A+     MI  G  P      +++  Y  
Sbjct: 659 LKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYAS 718

Query: 445 KNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             + ++A  ++  +     +P   TY  +VD   + +  +EA + L +IS+
Sbjct: 719 LEMFNEAREVVNYMIHHNLKPMELTYRRVVDSYCKAKRYDEAREFLSEISD 769



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 104/230 (45%), Gaps = 2/230 (0%)

Query: 341 GQPKLGMSLVD-MMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLES 399
           GQ  +   L+D M +  G       Y  +L + ++ G    A Q+   +R +   PT+ +
Sbjct: 158 GQHDVVCDLLDEMPLPPGSRLDVRAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVT 217

Query: 400 CTLLVEAYGQAGDP-DQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
             ++++ YG+ G    +  +  + M   G +PDD   +++IAA G+  LLD+A+    +L
Sbjct: 218 YNVVLDVYGRMGRSWPRIVALLEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDL 277

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
           +  G  P   TY  L+   G+     EA ++L ++ + G  P       L   YARAG  
Sbjct: 278 KARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFF 337

Query: 519 KKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
           ++A + L  + +K        +  ++      G + +A  +   M+  G+
Sbjct: 338 EEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGY 387



 Score = 41.2 bits (95), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 41/204 (20%), Positives = 74/204 (36%), Gaps = 37/204 (18%)

Query: 402 LLVEAYGQAGDPDQARSNFDYM-IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
           ++V A G+ G  D      D M +  G + D R   +++ A  +    ++AL L  EL +
Sbjct: 149 MVVRALGREGQHDVVCDLLDEMPLPPGSRLDVRAYTTVLHALSRAGRYERALQLFAELRR 208

Query: 461 DGFEPGPATYTVLVDWLGRL------------------------------------QLIN 484
            G  P   TY V++D  GR+                                     L++
Sbjct: 209 QGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAAGVEPDDFTASTVIAACGRDGLLD 268

Query: 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERII 544
           +A      +   G  P      +L  ++ +AG   +AL+ L  +E    Q     +  + 
Sbjct: 269 QAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELA 328

Query: 545 NGLLAGGFLQDAQRVHGLMEAQGF 568
                 GF ++A +    M ++G 
Sbjct: 329 GTYARAGFFEEAAKCLDTMTSKGL 352


>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Vitis vinifera]
          Length = 656

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/340 (25%), Positives = 151/340 (44%), Gaps = 8/340 (2%)

Query: 247 VLSEESFQ----TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMY 302
           VL  E F+    + V  ++ +++   KE  L+ A   +  M   G  P++V+   ++H Y
Sbjct: 235 VLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGY 294

Query: 303 SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE 362
           S  GN++ A+   +++R  G +PD   Y S+I      G+ +    L D M+  G+  + 
Sbjct: 295 SSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNA 354

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
             Y  L+  +   GD+  A    + M  +   P++ +  LLV A    G   +A      
Sbjct: 355 VTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKE 414

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
           M + G  PD      +I  Y +     KA +L  E+   G EP   TYT L+  L R   
Sbjct: 415 MRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNR 474

Query: 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--F 540
           + EA+ L  KI + G +P   +  ++ D +   G  ++A   L   E  ++ + PD+  F
Sbjct: 475 MKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLK--EMDRKSVPPDEVTF 532

Query: 541 ERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
             ++ G    G +++A+ +   M+ +G          LIS
Sbjct: 533 NTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLIS 572



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 121/253 (47%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ L+ A   E  + +A+ ++K+M + GI+PD +T  +L++ YS+ GN  +A +  
Sbjct: 388 SVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLH 447

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             + S G +P    Y S+I       + K    L + ++  G+     ++ A++      
Sbjct: 448 NEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCAN 507

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G+V  A  +   M  +   P   +   L++   + G  ++AR   D M R G KPD    
Sbjct: 508 GNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISY 567

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I+ YG++  +  A  +  E+   GF P   TY  L+  L + Q  + AE+LL ++  
Sbjct: 568 NTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVN 627

Query: 496 LGEAPPFKIQVSL 508
            G +P     +SL
Sbjct: 628 KGISPDDSTYLSL 640



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 114/265 (43%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  LI    KE  LE+A  +  KM E G+VP+ VT   L+  Y   G+L+RA    + + 
Sbjct: 322 YGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMV 381

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P    YN ++ A    G+      ++  M   GI      Y  L+  +++CG+ +
Sbjct: 382 KKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAK 441

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  + N M  +  +PT  + T L+    +     +A   F+ ++  G  PD     +M+
Sbjct: 442 KAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMV 501

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             +     +++A  LL E+++    P   T+  L+    R   + EA  LL ++   G  
Sbjct: 502 DGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIK 561

Query: 500 PPFKIQVSLCDMYARAGIEKKALQA 524
           P      +L   Y R G  K A + 
Sbjct: 562 PDHISYNTLISGYGRRGDIKDAFRV 586



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 111/249 (44%)

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           ++A +    M E GIVP I T   ++ ++ K   ++ A   +  +           +N M
Sbjct: 196 DEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIM 255

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           +      G+ K     +  M   G + +   Y  ++  ++  G++ GA +I + MR++  
Sbjct: 256 VNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGI 315

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
           +P   +   L+    + G  ++A   FD M+ +G  P+     ++I  Y  K  L++A +
Sbjct: 316 EPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFS 375

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
              E+ K G  P  +TY +LV  L     + EA+ ++ ++ + G  P       L + Y+
Sbjct: 376 YRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYS 435

Query: 514 RAGIEKKAL 522
           R G  KKA 
Sbjct: 436 RCGNAKKAF 444



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/236 (20%), Positives = 93/236 (39%), Gaps = 45/236 (19%)

Query: 218 LQPSRIDWINLLDRLREQN-----TQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC 272
           ++P+ + + +L+  L  +N       L+ K+ +     +    +V  ++ ++D H     
Sbjct: 455 IEPTHVTYTSLIYVLSRRNRMKEADDLFEKILD-----QGVSPDVIMFNAMVDGHCANGN 509

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           +E A  +LK+M+   + PD VT   L+    + G ++ A+   + ++  G +PD   YN+
Sbjct: 510 VERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNT 569

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I  Y   G  K    + D M++ G                                   
Sbjct: 570 LISGYGRRGDIKDAFRVRDEMLSIG----------------------------------- 594

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLL 448
           F PTL +   L++   +  + D A      M+  G  PDD    S+I   G  + L
Sbjct: 595 FNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGNVDTL 650



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/280 (21%), Positives = 114/280 (40%), Gaps = 13/280 (4%)

Query: 308 LDRAKEAFES---LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
           L RA EAF+    ++  G  P  +  N M+  ++   + ++   L   M    I  +   
Sbjct: 192 LRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYT 251

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
           +  ++    + G ++ A +    M    F+P + S   ++  Y   G+ + AR   D M 
Sbjct: 252 FNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMR 311

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
             G +PD     S+I+   K+  L++A  L  ++ + G  P   TY  L+D       + 
Sbjct: 312 VKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLE 371

Query: 485 EAEQLLGKISELGEAP---PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--D 539
            A     ++ + G  P    + + V    M  R G     ++     E +K+ + PD   
Sbjct: 372 RAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIK-----EMRKKGIIPDAIT 426

Query: 540 FERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
           +  +ING    G  + A  +H  M ++G   +     +LI
Sbjct: 427 YNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLI 466


>gi|58013026|gb|AAW62966.1| chloroplast embryo-defective 1270 [Arabidopsis thaliana]
          Length = 1429

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 99/425 (23%), Positives = 186/425 (43%), Gaps = 45/425 (10%)

Query: 190 KCKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLS 249
           + K +TDKILSL+  +  + +L     L+Q +  D+  ++  + +++ Q   +V E +  
Sbjct: 126 RVKFLTDKILSLKSNQFVADILD--ARLVQMTPTDYCFVVKSVGQESWQRALEVFEWLNL 183

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
                 N R  + ++    + N    A  I  +  E  +   +     ++ +YS++G   
Sbjct: 184 RHWHSPNARMVAAILGVLGRWNQESLAVEIFTRA-EPTVGDRVQVYNAMMGVYSRSGKFS 242

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAG--QPKLGMSLVDMMITSGIERSEEIYLA 367
           +A+E  +++R  G  PD   +N++I A + +G   P L + L+DM+  SG+      Y  
Sbjct: 243 KAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVELLDMVRNSGLRPDAITYNT 302

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAG---------------- 411
           LL + ++  ++ GA ++   M     QP L +   ++  YG+ G                
Sbjct: 303 LLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELELKG 362

Query: 412 -DPDQARSN------------------FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             PD    N                  +  M ++G   D+    ++I  YGK+  LD AL
Sbjct: 363 FFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLAL 422

Query: 453 NLLLELEK-DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
            L  +++   G  P   TYTVL+D LG+     EA  L+ ++ ++G  P  +   +L   
Sbjct: 423 QLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALICG 482

Query: 512 YARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
           YA+AG  ++A      +   +    PD+  +  +++ LL G   + A  ++  M + G  
Sbjct: 483 YAKAGKREEAEDTFSCM--LRSGTKPDNLAYSVMLDVLLRGNETRKAWGLYRDMISDGHT 540

Query: 570 ASERL 574
            S  L
Sbjct: 541 PSYTL 545



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 134/293 (45%), Gaps = 3/293 (1%)

Query: 218 LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L+P  I +  LL    R+ N     KV E  +     Q ++  Y+ +I  + +     +A
Sbjct: 293 LRPDAITYNTLLSACSRDSNLDGAVKVFE-DMEAHRCQPDLWTYNAMISVYGRCGLAAEA 351

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
           ER+  ++   G  PD VT   L++ +++  N ++ KE ++ ++  GF  D+  YN++I  
Sbjct: 352 ERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHM 411

Query: 337 YVNAGQPKLGMSLV-DMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
           Y   GQ  L + L  DM   SG       Y  L+ S  +      A  + + M     +P
Sbjct: 412 YGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKP 471

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
           TL++ + L+  Y +AG  ++A   F  M+R G KPD+   + M+    + N   KA  L 
Sbjct: 472 TLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWGLY 531

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSL 508
            ++  DG  P    Y +++  L +    ++ ++ +  + EL    P +I   L
Sbjct: 532 RDMISDGHTPSYTLYELMILGLMKENRSDDIQKTIRDMEELCGMNPLEISSVL 584



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/255 (21%), Positives = 112/255 (43%)

Query: 260  YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
            Y+ +I+A+ K+   + AE ++  + ++G  PD+ T   L+  Y++ G  +RA+  F ++ 
Sbjct: 755  YTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMM 814

Query: 320  SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
              G  P  +  N ++ A    G+ +    +V+ +   G + S+   L +L +FA+ G++ 
Sbjct: 815  RDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIF 874

Query: 380  GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
               +I + M+   + PT+    +++E   +      A      M     K +     SM+
Sbjct: 875  EVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSML 934

Query: 440  AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
              Y       K + +   +++ G EP   TY  L+    R +   E   L+ ++  LG  
Sbjct: 935  KMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLD 994

Query: 500  PPFKIQVSLCDMYAR 514
            P      SL   + +
Sbjct: 995  PKLDTYKSLISAFGK 1009



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 113/261 (43%), Gaps = 43/261 (16%)

Query: 253  FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
            +   +R Y  +I+   K   + DAE ++ +M E     ++     ++ MY+   +  +  
Sbjct: 888  YLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTV 947

Query: 313  EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
            + ++ ++  G +PD+  YN++I+ Y    +P+ G  L+  M   G++   + Y +L+ +F
Sbjct: 948  QVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAF 1007

Query: 373  AQ--C---------------------------------GDVRGAGQITNIMRIEEFQPTL 397
             +  C                                 G    A ++  +M+    +PTL
Sbjct: 1008 GKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTL 1067

Query: 398  ESCTLLVEAYGQAGDPDQAR---SNF-DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
             +  LL+ +Y  +G+P +A    SN  D  + L   P     +S+I AY +    +  + 
Sbjct: 1068 ATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLP----YSSVIDAYLRSKDYNSGIE 1123

Query: 454  LLLELEKDGFEPGPATYTVLV 474
             LLE++K+G EP    +T  V
Sbjct: 1124 RLLEMKKEGLEPDHRIWTCFV 1144



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 66/368 (17%), Positives = 147/368 (39%), Gaps = 35/368 (9%)

Query: 256  NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM-------------- 301
            +++ ++ L+ A+A+  C E A  I   M  +G  P + +  +L+H               
Sbjct: 786  DLKTWNSLMSAYAQCGCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELYVVV 845

Query: 302  ---------------------YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNA 340
                                 +++AGN+   K+ + S+++ G+ P  ++Y  MI      
Sbjct: 846  EELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKG 905

Query: 341  GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
             + +    +V  M  +  +    I+ ++L+ +    D +   Q+   ++    +P   + 
Sbjct: 906  KRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTY 965

Query: 401  TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
              L+  Y +   P++       M  LG  P      S+I+A+GK+  L++A  L  EL  
Sbjct: 966  NTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLS 1025

Query: 461  DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKK 520
             G +   + Y  ++         ++AE+LL  +   G  P       L   Y+ +G  ++
Sbjct: 1026 KGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQE 1085

Query: 521  ALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
            A + L  L+  + ++    +  +I+  L              M+ +G     R+    + 
Sbjct: 1086 AEKVLSNLKDTEVELTTLPYSSVIDAYLRSKDYNSGIERLLEMKKEGLEPDHRIWTCFVR 1145

Query: 581  SQTFNRQR 588
            + +F++++
Sbjct: 1146 AASFSKEK 1153



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 108/219 (49%), Gaps = 4/219 (1%)

Query: 248  LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
            + E   + +   Y+ LI  + ++   E+   ++++M   G+ P + T   L+  + K   
Sbjct: 953  IKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKC 1012

Query: 308  LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            L++A++ FE L S G + D+  Y++M+    ++G       L+ MM  +GIE +      
Sbjct: 1013 LEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHL 1072

Query: 368  LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
            L+ S++  G+ + A ++ + ++  E + T    + +++AY ++ D +        M + G
Sbjct: 1073 LMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAYLRSKDYNSGIERLLEMKKEG 1132

Query: 428  HKPDDRCTASMI--AAYGKKNLLDKALNLLLELEKDGFE 464
             +PD R     +  A++ K+ +  + + LL  LE  GF+
Sbjct: 1133 LEPDHRIWTCFVRAASFSKEKI--EVMLLLKALEDIGFD 1169



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 72/346 (20%), Positives = 134/346 (38%), Gaps = 23/346 (6%)

Query: 251 ESFQTNVRDYSKLIDAH--------AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMY 302
           +  Q  +RD  +L   +         K  C + A R LK    NG   +  T   ++  Y
Sbjct: 560 DDIQKTIRDMEELCGMNPLEISSVLVKGECFDLAARQLKVAITNGYELENDTLLSILGSY 619

Query: 303 SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY--VNAGQPKLGMSLVDMMITSGIER 360
           S +G    A E  E L+ H     + +  ++I+ +  VN     L     D  +      
Sbjct: 620 SSSGRHSEAFELLEFLKEHASGSKRLITEALIVLHCKVNNLSAALDEYFADPCVHGWCFG 679

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
           S  +Y  LL           A Q+ + +R+   + +   C  +V  Y + G P+ A    
Sbjct: 680 SSTMYETLLHCCVANEHYAEASQVFSDLRLSGCEASESVCKSMVVVYCKLGFPETAHQVV 739

Query: 421 DYMIRLG-HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
           +     G H         +I AYGK+ L  KA +++  L + G  P   T+  L+    +
Sbjct: 740 NQAETKGFHFACSPMYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQ 799

Query: 480 LQLINEAEQLLGKISELGEAPPFK-IQVSLCDMYARAGIEK-----KALQALGFLEAKKE 533
                 A  +   +   G +P  + I + L  +     +E+     + LQ +GF  +K  
Sbjct: 800 CGCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSS 859

Query: 534 QMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
            +       +++     G + + ++++  M+A G+  + RL   +I
Sbjct: 860 IL------LMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMI 899



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/284 (20%), Positives = 117/284 (41%), Gaps = 9/284 (3%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  L+          +A ++   +  +G          +V +Y K G  + A +      
Sbjct: 684 YETLLHCCVANEHYAEASQVFSDLRLSGCEASESVCKSMVVVYCKLGFPETAHQVVNQAE 743

Query: 320 SHGFQ-PDKKVYNSMIMAYVNAGQPKL---GMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + GF      +Y  +I AY   G+ KL     S+V  +  SG     + + +L+ ++AQC
Sbjct: 744 TKGFHFACSPMYTDIIEAY---GKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQC 800

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G    A  I N M  +   PT+ES  +L+ A    G  ++     + +  +G K      
Sbjct: 801 GCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSI 860

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             M+ A+ +   + +   +   ++  G+ P    Y ++++ L + + + +AE ++ ++ E
Sbjct: 861 LLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEE 920

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD 539
                   I  S+  MY      KK +Q   +   K+  + PD+
Sbjct: 921 ANFKVELAIWNSMLKMYTAIEDYKKTVQV--YQRIKETGLEPDE 962


>gi|225433790|ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Vitis vinifera]
          Length = 1045

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/361 (22%), Positives = 150/361 (41%), Gaps = 51/361 (14%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
            + F  +   YSK+I      + +++A  + ++M  N +VPD+ T T+L+  + K G L 
Sbjct: 473 SKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQ 532

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
           +A++ F+ +   G  P+   Y ++I AY+ A +      L +MM++ G   +   Y AL+
Sbjct: 533 QARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALI 592

Query: 370 RSFAQCGDVRGAGQIT-------------------------------------------- 385
               + G +  A QI                                             
Sbjct: 593 DGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKV 652

Query: 386 -------NIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
                  ++M +E  +P       L++ + + G  D+A+  F  M   G+ P+    +S+
Sbjct: 653 KEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSL 712

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           I    K   LD AL +L  + ++   P    YT ++D L ++   +EA +L+  + E G 
Sbjct: 713 IDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGC 772

Query: 499 APPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQR 558
            P      ++ D + +AG   K L+ +  + AK        +  +IN   A G L DA +
Sbjct: 773 HPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQ 832

Query: 559 V 559
           +
Sbjct: 833 L 833



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 134/321 (41%), Gaps = 51/321 (15%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ LID+  K   L+ A +   +M  +G  P++VT T L+H Y KA  +  A E F
Sbjct: 514 DVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELF 573

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL------------VDMM--ITSGIERS 361
           E + S G  P+   Y ++I  +  +GQ +    +            VDM   I  G  R 
Sbjct: 574 EMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRD 633

Query: 362 EEI--YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
             I  Y AL+    +   V+ A  + ++M +E  +P       L++ + + G  D+A+  
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMV 693

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL---LE------------------- 457
           F  M   G+ P+    +S+I    K   LD AL +L   LE                   
Sbjct: 694 FTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCK 753

Query: 458 -------------LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKI 504
                        +E+ G  P   TYT ++D  G+   +++  +L+ ++   G AP F  
Sbjct: 754 VGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVT 813

Query: 505 QVSLCDMYARAGIEKKALQAL 525
              L +    AG+   A Q L
Sbjct: 814 YRVLINHCCAAGLLDDAHQLL 834



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 83/354 (23%), Positives = 153/354 (43%), Gaps = 37/354 (10%)

Query: 260 YSKLIDAHAKEN---------CL------EDAERILKKMNENGIVPDIVTSTVLVHMYSK 304
           Y +++DAH   N         CL      E A  I+++M   G +PD  T + ++ +   
Sbjct: 433 YGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCN 492

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
           A  +D A   FE ++S+   PD   Y  +I ++   G  +      D M+  G   +   
Sbjct: 493 ASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVT 552

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA-------R 417
           Y AL+ ++ +   +  A ++  +M  E   P + + T L++ + ++G  ++A       R
Sbjct: 553 YTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMR 612

Query: 418 SNFD-------YMIRLGH--KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPA 468
            N D       + I  G+   P+     +++    K + + +A +LL  +  +G EP   
Sbjct: 613 GNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHI 672

Query: 469 TYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFL 528
            Y  L+D   ++  ++EA+ +  K+SE G  P      SL D   R   +K+   AL  L
Sbjct: 673 VYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLID---RLFKDKRLDLALKVL 729

Query: 529 EAKKEQMGPDD---FERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
               E     +   +  +I+GL   G   +A R+  +ME +G   +     A+I
Sbjct: 730 SRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMI 783



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/343 (20%), Positives = 139/343 (40%), Gaps = 38/343 (11%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++ +E F+ +   Y+++I    + +  E+A   L +M  +  +P++VT  +L+    +  
Sbjct: 289 LIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKR 348

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            L R K     + + G  P ++++NS+I AY  +G       L+  M   G +    +Y 
Sbjct: 349 QLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYN 408

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ----------------- 409
            L+     CG+              E  P+L+   L  +AYG+                 
Sbjct: 409 ILIGGI--CGN--------------EKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLA 452

Query: 410 -----AGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
                AG  ++A S    M+  G  PD    + +I      + +D A  L  E++ +   
Sbjct: 453 RCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVV 512

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQA 524
           P   TYT+L+D   ++ L+ +A +   ++   G AP      +L   Y +A     A + 
Sbjct: 513 PDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANEL 572

Query: 525 LGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
              + ++        +  +I+G    G ++ A +++  M    
Sbjct: 573 FEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNA 615



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 118/284 (41%), Gaps = 18/284 (6%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           LE AE+   +M +  +V + V  + L      AG  ++A      + S GF PD   Y+ 
Sbjct: 426 LELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSK 485

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I    NA +      L + M ++ +      Y  L+ SF + G ++ A +  + M  + 
Sbjct: 486 VIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDG 545

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P + + T L+ AY +A     A   F+ M+  G  P+     ++I  + K   ++KA 
Sbjct: 546 CAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKAC 605

Query: 453 NLLLELE--------------KDGF--EPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
            +   +                DG   +P   TY  LVD L +   + EA  LL  +S  
Sbjct: 606 QIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVE 665

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF 540
           G  P   +  +L D + + G   +A   + F +  +   GP+ +
Sbjct: 666 GCEPNHIVYDALIDGFCKVGKLDEA--QMVFTKMSERGYGPNVY 707



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 105/256 (41%), Gaps = 5/256 (1%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           V+S E  + N   Y  LID   K   L++A+ +  KM+E G  P++ T + L+    K  
Sbjct: 661 VMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDK 720

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            LD A +    +  +   P+  +Y  MI      G+      L+ MM   G   +   Y 
Sbjct: 721 RLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYT 780

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           A++  F + G V    ++   M  +   P   +  +L+     AG  D A    D M + 
Sbjct: 781 AMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQT 840

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL---GRLQLI 483
                      +I  + ++ ++  +L LL E+ ++   P    Y +L+D     GRL+L 
Sbjct: 841 YWPKHMAGYRKVIEGFNREFII--SLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELA 898

Query: 484 NEAEQLLGKISELGEA 499
            E  + +   +    A
Sbjct: 899 LELHKEMSSCTSYSAA 914



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 77/372 (20%), Positives = 139/372 (37%), Gaps = 58/372 (15%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+    + + L+ A  + ++M+++G   D  T    VH+  KAG   R +EA   + 
Sbjct: 235 YNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAG---RWREALALIE 291

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
              F+ D  +Y  MI     A   +  M  +  M +S    +   Y  LL     CG +R
Sbjct: 292 KEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILL-----CGCLR 346

Query: 380 G-----AGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
                   +I ++M  E   P+      L+ AY ++GD   A      M   G +P    
Sbjct: 347 KRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVV 406

Query: 435 TASMIA-------------------AYGK-------------KNL---------LDKALN 453
              +I                    AYG+              NL          +KA +
Sbjct: 407 YNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYS 466

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
           ++ E+   GF P  +TY+ ++  L     ++ A  L  ++      P       L D + 
Sbjct: 467 IIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFC 526

Query: 514 RAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAAS 571
           + G+ ++A +   F E  ++   P+   +  +I+  L    +  A  +  +M ++G   +
Sbjct: 527 KVGLLQQARK--WFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPN 584

Query: 572 ERLKVALISSQT 583
                ALI    
Sbjct: 585 VVTYTALIDGHC 596



 Score = 45.1 bits (105), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 47/233 (20%), Positives = 87/233 (37%), Gaps = 12/233 (5%)

Query: 251 ESFQTNVRD-----YSKLIDAHAKENCLEDAERI----LKKMNENGIVPDIVTSTVLVHM 301
           E F   +RD       KL++   ++ C      +    L ++ + G  P  +T   LV +
Sbjct: 182 EQFLREIRDEDKEILGKLLNVLIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRV 241

Query: 302 YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS 361
           + +A  LD A      +   GF  D       +     AG+ +  ++L++       +  
Sbjct: 242 FLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREALALIE---KEEFKLD 298

Query: 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421
             IY  ++    +      A    + MR     P + +  +L+    +     + +    
Sbjct: 299 TVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILS 358

Query: 422 YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
            MI  G  P  R   S+I AY +      A  LL ++   G +PG   Y +L+
Sbjct: 359 MMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILI 411


>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
          Length = 1144

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 114/231 (49%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ +I+   KE  L+ A     +M + GI+P++VT + ++    KA  +D+A E  
Sbjct: 198 DVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVL 257

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
            S+  +G  P+ + YNS++  Y ++GQPK  +  +  M + G+E     Y +L+    + 
Sbjct: 258 TSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKN 317

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G    A ++ + M     +P + +   L++ Y   G   +     D M+R G  P+    
Sbjct: 318 GRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVF 377

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           + +I AY K+  +D+A+ +  ++ + G  P   TY  ++  L +   + +A
Sbjct: 378 SILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDA 428



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 89/383 (23%), Positives = 169/383 (44%), Gaps = 12/383 (3%)

Query: 195 TDKILSLEKEEDPSPLLAEWKELLQ----PSRIDWINLLDRLREQNTQLYFKVAELVLS- 249
           T  I    KE D       + E+L     P+ + + +++  L +   Q   K  E++ S 
Sbjct: 203 TTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCK--AQAMDKAMEVLTSM 260

Query: 250 -EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNL 308
            +     N R Y+ ++  +      ++A   LKKM+ +G+ PD+VT   L+    K G  
Sbjct: 261 VKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRC 320

Query: 309 DRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLAL 368
             A++ F+S+   G +P+   Y +++  Y   G       L+D+M+ +GI  +  ++  L
Sbjct: 321 TEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSIL 380

Query: 369 LRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH 428
           + ++A+ G V  A  + + MR +   P   +   ++    ++G  + A   F+ MI    
Sbjct: 381 ICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERL 440

Query: 429 KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQ 488
            P +    S+I +    +  DKA  L+LE+   G       +  ++D   +   + E+E+
Sbjct: 441 SPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEK 500

Query: 489 LLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIING 546
           L   +  +G  P      +L D Y  AG   +A + L  + +    M PD   +  +ING
Sbjct: 501 LFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVG--MKPDCVTYNTLING 558

Query: 547 LLAGGFLQDAQRVHGLMEAQGFA 569
                 ++DA  +   ME+ G +
Sbjct: 559 YCKISRMEDALVLFREMESSGVS 581



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 140/314 (44%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           +S LI A+AK+  ++ A  +  KM + G+ PD VT   ++ +  K+G ++ A   FE + 
Sbjct: 377 FSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMI 436

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
                P   VYNS+I +     +      L+  M+  GI      + +++ S  + G V 
Sbjct: 437 DERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVI 496

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            + ++ ++M     +P + + + L++ Y  AG  D+A      M+ +G KPD     ++I
Sbjct: 497 ESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLI 556

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             Y K + ++ AL L  E+E  G  P   TY +++  L + +    A++L   I+E G  
Sbjct: 557 NGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQ 616

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
                   +     +  +  +AL+    L     Q+    F  +I  LL  G   +A+ +
Sbjct: 617 LELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDL 676

Query: 560 HGLMEAQGFAASER 573
              + A G     R
Sbjct: 677 FAALSANGLVPDVR 690



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 99/218 (45%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++ +ID+H KE  + ++E++   M   G+ PDI+T + L+  Y  AG +D A +   S+ 
Sbjct: 482 FNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMV 541

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           S G +PD   YN++I  Y    + +  + L   M +SG+      Y  +L+   Q     
Sbjct: 542 SVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTA 601

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++   +     Q  L +  +++    +    D+A   F  +     + + R    MI
Sbjct: 602 AAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMI 661

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
            A  K    D+A +L   L  +G  P   TY+++ + L
Sbjct: 662 GALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENL 699



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 87/209 (41%), Gaps = 9/209 (4%)

Query: 240 YFKVAELVLSEESFQTNVR--------DYSKLIDAHAKENCLEDAERILKKMNENGIVPD 291
           + K   ++ SE+ F   VR         YS LID +     +++A ++L  M   G+ PD
Sbjct: 489 HCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPD 548

Query: 292 IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVD 351
            VT   L++ Y K   ++ A   F  + S G  PD   YN ++       +      L  
Sbjct: 549 CVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYV 608

Query: 352 MMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAG 411
            +  SG +     Y  +L    +      A ++   + + + Q    +  +++ A  + G
Sbjct: 609 GITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVG 668

Query: 412 DPDQARSNFDYMIRLGHKPDDRCTASMIA 440
             D+A+  F  +   G  PD R T S++A
Sbjct: 669 RNDEAKDLFAALSANGLVPDVR-TYSLMA 696



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 92/216 (42%), Gaps = 11/216 (5%)

Query: 187 ITGKCKLITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKVAE 245
           I G CK+         + ED   L  E +   + P  I +  +L  L +       K   
Sbjct: 556 INGYCKI--------SRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELY 607

Query: 246 LVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKA 305
           + ++E   Q  +  Y+ ++    K N  ++A R+ + +    +  +  T  +++    K 
Sbjct: 608 VGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKV 667

Query: 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
           G  D AK+ F +L ++G  PD + Y+ M    +  G  +    L   M  +G   +  + 
Sbjct: 668 GRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRML 727

Query: 366 LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCT 401
            +++R   Q GD+  AG  T +  I+E   +LE+ T
Sbjct: 728 NSIVRKLLQRGDITRAG--TYLFMIDEKHFSLEAST 761



 Score = 47.0 bits (110), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 55/252 (21%), Positives = 108/252 (42%), Gaps = 13/252 (5%)

Query: 325 PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQI 384
           P+   Y  +I +   AG+  LG + +  +I  G       +  LL+    C D R +  +
Sbjct: 89  PNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGL--CADKRTSDAM 146

Query: 385 TNIMR-IEEFQ--PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK--PDDRCTASMI 439
             ++R + +    P + S  +L++         +A      M   G    PD     ++I
Sbjct: 147 DIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVI 206

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             + K+  LDKA     E+   G  P   TY+ ++  L + Q +++A ++L  + + G  
Sbjct: 207 NGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVM 266

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFL-EAKKEQMGPD--DFERIINGLLAGGFLQDA 556
           P  +   S+   Y  +G  K   +A+GFL +   + + PD   +  +++ L   G   +A
Sbjct: 267 PNCRTYNSIVHGYCSSGQPK---EAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEA 323

Query: 557 QRVHGLMEAQGF 568
           +++   M  +G 
Sbjct: 324 RKMFDSMTKRGL 335


>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 915

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 121/253 (47%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ LID   +    + A R+L  MN+ G+VPD  T T ++    K+  ++ A + F
Sbjct: 461 DVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLF 520

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           +SL      P+  +Y ++I  Y  AG+      +++ M++     +   + AL+      
Sbjct: 521 DSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTD 580

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G ++ A  +   M   + QPT+ + T+L+    + GD D A   F  M+  G KPD    
Sbjct: 581 GKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTY 640

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            + I  Y ++  L  A +++ +++++G  P   TY+ L+   G L   N A  +L ++ +
Sbjct: 641 TTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKGYGDLGRTNSAFVVLKRMHD 700

Query: 496 LGEAPPFKIQVSL 508
            G  P     +SL
Sbjct: 701 TGCEPSQHTFLSL 713



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 150/343 (43%), Gaps = 47/343 (13%)

Query: 221 SRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERIL 280
           S  D + +LD  R+ N    F        E  ++  +  Y+ L+++ A+   +++ +++ 
Sbjct: 155 SVADTLFVLDLCRKMNKDESF--------ELKYKLIIGCYNTLLNSLARFGLVDEMKQVY 206

Query: 281 KKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNA 340
            +M E+ + P+I T   +V+ Y K GN++ A +    +   G  PD   Y S+IM Y   
Sbjct: 207 MEMLEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVSMIVEAGLDPDFFTYTSLIMGYCQR 266

Query: 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
                   +   M   G  R+E  Y  L+        +  A  +   M+ ++  PT+ + 
Sbjct: 267 KDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVERRIDEAMDLFVKMKDDDCYPTVRTY 326

Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
           T+L++A                                +    +K+   +ALNL+ E+E+
Sbjct: 327 TVLIKA--------------------------------LCGSERKS---EALNLVKEMEE 351

Query: 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKK 520
            G +P   TYTVL+D L     + +A +LLG++ E G  P      +L + Y + G+ + 
Sbjct: 352 KGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIED 411

Query: 521 ALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLM 563
           AL  +  +E++   + P+   R  N L+ G   ++  +  G++
Sbjct: 412 ALDVVELMESR--NLRPN--TRTYNELIKGYCKRNVHKAMGVL 450



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 113/246 (45%), Gaps = 1/246 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + ++     VR Y+ LI A        +A  ++K+M E GI P+I T TVL+        
Sbjct: 314 MKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCK 373

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L++A+E    +   G  P+   YN++I  Y   G  +  + +V++M +  +  +   Y  
Sbjct: 374 LEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNE 433

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L++ + +  +V  A  + N M   +  P + +   L++   ++G+ D A      M   G
Sbjct: 434 LIKGYCK-RNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRG 492

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD     SMI +  K   +++A +L   LE+    P    YT L+D   +   +NEA 
Sbjct: 493 LVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAH 552

Query: 488 QLLGKI 493
            +L K+
Sbjct: 553 LMLEKM 558



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/313 (21%), Positives = 136/313 (43%), Gaps = 56/313 (17%)

Query: 218 LQPS-RIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           LQP+   D I +   L++ +    ++  + +LS  + + +   Y+  I  + +E  L+DA
Sbjct: 598 LQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGT-KPDAHTYTTFIQTYCREGRLQDA 656

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI-- 334
           E ++ KM ENG+ PD+ T + L+  Y   G  + A    + +   G +P +  + S+I  
Sbjct: 657 EDMVAKMKENGVSPDLFTYSSLIKGYGDLGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKH 716

Query: 335 ---MAY--VNAGQPKLGM-----------SLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
              M Y  V  G+P + +            L++ M+  G+  + + Y  L+    + G++
Sbjct: 717 LLEMKYGKVKGGEPGVCVMSNMMEFDIVVELLEKMVEHGVTPNAKSYEKLMLGICEIGNL 776

Query: 379 RGAGQITNIMRIEE------------------------------------FQPTLESCTL 402
           R A ++ + M+ +E                                      P LESC +
Sbjct: 777 RVAEKVFDHMQQKEGISPSELVFNALLSCCCKLEKHNEAAKVVDDMICVGHLPQLESCKI 836

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           L+    + G+ ++  S F  +++ G+  D+     +I   GK+ L++    L   +EK+G
Sbjct: 837 LICRLYKKGEKERGTSVFQNLLQCGYYDDELAWKIIIDGVGKQGLVEAFYELFNVMEKNG 896

Query: 463 FEPGPATYTVLVD 475
                 TY++L++
Sbjct: 897 CTFSSQTYSLLIE 909



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 72/331 (21%), Positives = 127/331 (38%), Gaps = 34/331 (10%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI  + +   L+ A ++ K+M   G   + V  T L+H       +D A + F  ++
Sbjct: 256 YTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVERRIDEAMDLFVKMK 315

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
                P  + Y  +I A   + +    ++LV  M   GI+ +   Y  L+ S      + 
Sbjct: 316 DDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLE 375

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++   M  +   P + +   L+  Y + G  + A    + M     +P+ R    +I
Sbjct: 376 KARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELI 435

Query: 440 AAYGKKNL----------------------------------LDKALNLLLELEKDGFEP 465
             Y K+N+                                   D A  LL  +   G  P
Sbjct: 436 KGYCKRNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVP 495

Query: 466 GPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
            P TYT ++D L + + + EA  L   + +    P   +  +L D Y +AG   +A   L
Sbjct: 496 DPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLML 555

Query: 526 GFLEAKKEQMGPDDFERIINGLLAGGFLQDA 556
             + +K        F  +I+GL   G L++A
Sbjct: 556 EKMLSKNCLPNSLTFNALIHGLCTDGKLKEA 586



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 75/349 (21%), Positives = 146/349 (41%), Gaps = 31/349 (8%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N   ++ LI     +  L++A  + +KM +  + P + T T+L+H   K G+ D A   F
Sbjct: 566 NSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRF 625

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + + S G +PD   Y + I  Y   G+ +    +V  M  +G+      Y +L++ +   
Sbjct: 626 QQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKGYGDL 685

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEA-----YGQA--GDPDQA-RSN---FDYMI 424
           G    A  +   M     +P+  +   L++      YG+   G+P     SN   FD ++
Sbjct: 686 GRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHLLEMKYGKVKGGEPGVCVMSNMMEFDIVV 745

Query: 425 RL-------GHKPDDRCTASM---IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
            L       G  P+ +    +   I   G   + +K  + + +  K+G  P    +  L+
Sbjct: 746 ELLEKMVEHGVTPNAKSYEKLMLGICEIGNLRVAEKVFDHMQQ--KEGISPSELVFNALL 803

Query: 475 DWLGRLQLINEAEQLLGKISELGEAPPFK-IQVSLCDMYARAGIEKKALQALGFLEAKKE 533
               +L+  NEA +++  +  +G  P  +  ++ +C +Y +   E+        L+    
Sbjct: 804 SCCCKLEKHNEAAKVVDDMICVGHLPQLESCKILICRLYKKGEKERGTSVFQNLLQCGYY 863

Query: 534 QMGPDD---FERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
               DD   ++ II+G+   G ++    +  +ME  G   S +    LI
Sbjct: 864 ----DDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCTFSSQTYSLLI 908



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 93/215 (43%)

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
           Y  ++  + + G+V  A Q  +++      P   + T L+  Y Q  D D A   F  M 
Sbjct: 221 YNKMVNGYCKVGNVEEANQYVSMIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMP 280

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
             G + ++     +I     +  +D+A++L ++++ D   P   TYTVL+  L   +  +
Sbjct: 281 LKGCRRNEVAYTHLIHGLCVERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKS 340

Query: 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERII 544
           EA  L+ ++ E G  P       L D        +KA + LG +  K        +  +I
Sbjct: 341 EALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALI 400

Query: 545 NGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
           NG    G ++DA  V  LME++    + R    LI
Sbjct: 401 NGYCKRGMIEDALDVVELMESRNLRPNTRTYNELI 435


>gi|302761054|ref|XP_002963949.1| hypothetical protein SELMODRAFT_166434 [Selaginella moellendorffii]
 gi|300167678|gb|EFJ34282.1| hypothetical protein SELMODRAFT_166434 [Selaginella moellendorffii]
          Length = 1365

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 135/307 (43%), Gaps = 11/307 (3%)

Query: 235 QNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVT 294
           QN ++ F+     L +  F  N   YS L+ A+A+    E A R L  M   G+ P+   
Sbjct: 663 QNAEIVFRD----LQQHGFAGNTSAYSALLSAYAETGNFERATRALDNMVAAGLQPNATC 718

Query: 295 STVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMI 354
           +  ++  + +AG      E F+ L   G  P+ + +  +  A+   G  +   S+   M 
Sbjct: 719 ANYVLEAFGRAGKAKEISEFFQRLPEMGISPNSRTFVVIFHAFSRNGNLEEARSMYRQMK 778

Query: 355 TSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPD 414
            +G   S +++ ALL  +++      A ++   ++    +  ++    ++  Y + G   
Sbjct: 779 EAGFSPSIQVFKALLALYSRETVEIDAEELVKDIKKAGLELDIDIYNHMISLYSKLGSYR 838

Query: 415 QARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
            A   F  M  +G  PD     ++I  Y +  ++ +A  LL E+ K G  P  +TYT L+
Sbjct: 839 NAALVFKGMQEIGCSPDATTFNTLIMLYSRNQMVQEAQALLREMIKTGNAPNISTYTTLI 898

Query: 475 DWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ 534
              GRLQ   +AE +   I+E G  P       + ++Y +AG  +K       +E   EQ
Sbjct: 899 SAYGRLQAYEDAELVFKSIAETGCKPDATAYNVMINVYRKAGEHRK-------IEEIIEQ 951

Query: 535 MGPDDFE 541
           M  D FE
Sbjct: 952 MKVDGFE 958



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 108/216 (50%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI A +  N L DA  I ++M   G  PDI T   ++ +Y +AG ++ A   F  ++
Sbjct: 199 YNTLISACSLNNRLSDAILIFEEMQRQGCDPDIWTYNAMISVYGRAGRVEAASSIFRIMQ 258

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             GF PD   YNS++ A+   G+ +    +  MM  +     E  Y  ++  + + G  R
Sbjct: 259 EQGFTPDAVTYNSVLHAFARDGRIEEVERIRGMMRDARCSSDEITYNTMIHMYGKAGMHR 318

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++   M+ E   P   + T+L++  G+AG  ++A + F+ M++   +P  +  ++MI
Sbjct: 319 KAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVRPTLQAFSAMI 378

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
            AY K ++   A +    + + G  P    Y+V++D
Sbjct: 379 CAYAKADMFTDAEHTYSCMLRAGVRPDLLAYSVMLD 414



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 119/277 (42%), Gaps = 10/277 (3%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQ-----TNVRDYSKLIDAHAKENC 272
           L+P  I +  L+      N     ++++ +L  E  Q      ++  Y+ +I  + +   
Sbjct: 192 LRPDTITYNTLISACSLNN-----RLSDAILIFEEMQRQGCDPDIWTYNAMISVYGRAGR 246

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           +E A  I + M E G  PD VT   ++H +++ G ++  +     +R      D+  YN+
Sbjct: 247 VEAASSIFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVERIRGMMRDARCSSDEITYNT 306

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           MI  Y  AG  +    L   M   G       +  L+ +  + G V  A  +   M   +
Sbjct: 307 MIHMYGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQ 366

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
            +PTL++ + ++ AY +A     A   +  M+R G +PD    + M+  + K  + +K +
Sbjct: 367 VRPTLQAFSAMICAYAKADMFTDAEHTYSCMLRAGVRPDLLAYSVMLDVFFKAGMPEKCI 426

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
            L   +   G +P  + Y ++V    +   + E E L
Sbjct: 427 ILYKAMVGSGLKPELSVYAIMVRVFYQKSSVAEIENL 463



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 104/247 (42%)

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A  +L+ +   G+ PD +T   L+   S    L  A   FE ++  G  PD   YN+MI 
Sbjct: 180 ASSLLQDVYAAGLRPDTITYNTLISACSLNNRLSDAILIFEEMQRQGCDPDIWTYNAMIS 239

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
            Y  AG+ +   S+  +M   G       Y ++L +FA+ G +    +I  +MR      
Sbjct: 240 VYGRAGRVEAASSIFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVERIRGMMRDARCSS 299

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
              +   ++  YG+AG   +A   +  M   G  PD      +I   GK   +++A  + 
Sbjct: 300 DEITYNTMIHMYGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMF 359

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
            ++ K    P    ++ ++    +  +  +AE     +   G  P       + D++ +A
Sbjct: 360 EDMLKSQVRPTLQAFSAMICAYAKADMFTDAEHTYSCMLRAGVRPDLLAYSVMLDVFFKA 419

Query: 516 GIEKKAL 522
           G+ +K +
Sbjct: 420 GMPEKCI 426



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 77/358 (21%), Positives = 150/358 (41%), Gaps = 39/358 (10%)

Query: 194 ITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESF 253
           ++D I  L++ E     +  WKE L P+  D   ++ R+   + Q   ++ E +     +
Sbjct: 30  LSDAICRLDEHEFVRETVDGWKEQLAPT--DLCYVVKRVANTSWQRALELYECLNVARWY 87

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
             N R  + ++    + N    A+ +  +  E+ I   +     L+ +Y++ G+ +  ++
Sbjct: 88  APNPRMLAVMLSVLGRANQPGLAQELFDRA-ESSIGNCVQVYNSLMSVYARHGDWNSVQQ 146

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAG-QPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
               ++  G +PD   +N +I A    G Q  L  SL+  +  +G+      Y  L+ + 
Sbjct: 147 LLCRMQDRGCRPDLVTFNIVIKARTRGGMQEGLASSLLQDVYAAGLRPDTITYNTLISAC 206

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP-- 430
           +    +  A  I   M+ +   P + +   ++  YG+AG  + A S F  M   G  P  
Sbjct: 207 SLNNRLSDAILIFEEMQRQGCDPDIWTYNAMISVYGRAGRVEAASSIFRIMQEQGFTPDA 266

Query: 431 ---------------------------DDRCTA------SMIAAYGKKNLLDKALNLLLE 457
                                      D RC++      +MI  YGK  +  KA  L ++
Sbjct: 267 VTYNSVLHAFARDGRIEEVERIRGMMRDARCSSDEITYNTMIHMYGKAGMHRKAEELYVQ 326

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
           ++++G  P   T+TVL+D LG+   +NEA  +   + +    P  +   ++   YA+A
Sbjct: 327 MKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVRPTLQAFSAMICAYAKA 384



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/324 (20%), Positives = 134/324 (41%), Gaps = 49/324 (15%)

Query: 226  INLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMN 284
            I+L  +L   +N  L FK     + E     +   ++ LI  +++   +++A+ +L++M 
Sbjct: 828  ISLYSKLGSYRNAALVFKG----MQEIGCSPDATTFNTLIMLYSRNQMVQEAQALLREMI 883

Query: 285  ENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPK 344
            + G  P+I T T L+  Y +    + A+  F+S+   G +PD   YN MI  Y  AG+  
Sbjct: 884  KTGNAPNISTYTTLISAYGRLQAYEDAELVFKSIAETGCKPDATAYNVMINVYRKAGEH- 942

Query: 345  LGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
                                              R   +I   M+++ F+P+L +  +L+
Sbjct: 943  ----------------------------------RKIEEIIEQMKVDGFEPSLTTIHMLM 968

Query: 405  EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
            ++YG+ G   +A    + +  +G  PD     S+I ++        A+  L ++      
Sbjct: 969  DSYGKGGATGKAEEVLETLPEIGMSPDAIHYTSIINSHLNNKDYLSAVIWLRKMTDACVR 1028

Query: 465  PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQA 524
            P   T T  V      +  + A  LL  +SE G + P ++               K +Q 
Sbjct: 1029 PTHVTITCFVGAASVCERSSHALMLLKALSEAGFSLPLRLMTE---------CTPKVVQD 1079

Query: 525  LGFLEAKKEQMGPDDFERIINGLL 548
            +  +  + ++ GP+  + ++N L+
Sbjct: 1080 MQDIFDQLQESGPEACQGVVNVLM 1103



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/262 (21%), Positives = 112/262 (42%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y +L    AK     +AE  ++     G V       VLV  Y +AG  D A   F  + 
Sbjct: 544 YKRLAVMLAKAGRFSEAEEEMRTSQTYGQVQVSDFLKVLVASYDRAGMQDEALARFLDMT 603

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G + D +V  + +M Y   G   +   L+   + +   +   +++A++ S+ +    +
Sbjct: 604 TEGLEMDAEVLQTAVMCYCRKGFAFVAHELLIDCLHAFDVKDSAMHVAIIASYGKLKLWQ 663

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  +   ++   F     + + L+ AY + G+ ++A    D M+  G +P+  C   ++
Sbjct: 664 NAEIVFRDLQQHGFAGNTSAYSALLSAYAETGNFERATRALDNMVAAGLQPNATCANYVL 723

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            A+G+     +       L + G  P   T+ V+     R   + EA  +  ++ E G +
Sbjct: 724 EAFGRAGKAKEISEFFQRLPEMGISPNSRTFVVIFHAFSRNGNLEEARSMYRQMKEAGFS 783

Query: 500 PPFKIQVSLCDMYARAGIEKKA 521
           P  ++  +L  +Y+R  +E  A
Sbjct: 784 PSIQVFKALLALYSRETVEIDA 805



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 65/332 (19%), Positives = 122/332 (36%), Gaps = 55/332 (16%)

Query: 289 VPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMS 348
           V D      ++  Y K      A+  F  L+ HGF  +   Y++++ AY   G  +    
Sbjct: 643 VKDSAMHVAIIASYGKLKLWQNAEIVFRDLQQHGFAGNTSAYSALLSAYAETGNFERATR 702

Query: 349 LVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYG 408
            +D M+ +G++ +      +L +F + G  +   +    +      P   +  ++  A+ 
Sbjct: 703 ALDNMVAAGLQPNATCANYVLEAFGRAGKAKEISEFFQRLPEMGISPNSRTFVVIFHAFS 762

Query: 409 QAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE---- 464
           + G+ ++ARS +  M   G  P  +   +++A Y ++ +   A  L+ +++K G E    
Sbjct: 763 RNGNLEEARSMYRQMKEAGFSPSIQVFKALLALYSRETVEIDAEELVKDIKKAGLELDID 822

Query: 465 -------------------------------PGPATYTVLVDWLGRLQLINEAEQLLGKI 493
                                          P   T+  L+    R Q++ EA+ LL ++
Sbjct: 823 IYNHMISLYSKLGSYRNAALVFKGMQEIGCSPDATTFNTLIMLYSRNQMVQEAQALLREM 882

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--------------- 538
            + G AP      +L   Y R    + A   L F    +    PD               
Sbjct: 883 IKTGNAPNISTYTTLISAYGRLQAYEDA--ELVFKSIAETGCKPDATAYNVMINVYRKAG 940

Query: 539 ---DFERIINGLLAGGFLQDAQRVHGLMEAQG 567
                E II  +   GF      +H LM++ G
Sbjct: 941 EHRKIEEIIEQMKVDGFEPSLTTIHMLMDSYG 972


>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
           Japonica Group]
 gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
          Length = 648

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 139/313 (44%), Gaps = 4/313 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +VR ++ LI    +   +E+A +I K+M   GI PD+V+ + L+ ++++ G +D A    
Sbjct: 260 DVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYL 319

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +R  G  PD  +Y  +I  +  AG     + + D M+  G       Y  LL    + 
Sbjct: 320 REMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKE 379

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
             +  A  + N MR     P L + T L+  Y   G  D+A   FD M+    +PD    
Sbjct: 380 RRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTY 439

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I    ++  LDKA +L  ++      P   TY++L+D       + +A   L ++  
Sbjct: 440 NTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMIN 499

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFL 553
            G  P      S+   Y R+G   K  + L  +   K  + PD   +  +I+G +    +
Sbjct: 500 KGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNK--VSPDLITYNTLIHGYIKEDKM 557

Query: 554 QDAQRVHGLMEAQ 566
            DA ++  +ME +
Sbjct: 558 HDAFKLLNMMEKE 570



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 130/284 (45%), Gaps = 2/284 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ L++   KE  L DAE +L +M E G+ PD+ T T L+H Y   G LD+A + F
Sbjct: 365 DVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLF 424

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           +++ +   +PD   YN++I      G       L D M +  I  +   Y  L+ S  + 
Sbjct: 425 DTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEK 484

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G V  A    + M  +   P + +   +++ Y ++G+  + +     M+     PD    
Sbjct: 485 GQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITY 544

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I  Y K++ +  A  LL  +EK+  +P   TY +L++       + EA  +  K+  
Sbjct: 545 NTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCA 604

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD 539
            G  P     +S+ + +  AG  K+A Q     E  +    PDD
Sbjct: 605 KGIEPDRYTYMSMINGHVTAGNSKEAFQLHD--EMLQRGFAPDD 646



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 144/340 (42%), Gaps = 5/340 (1%)

Query: 246 LVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKA 305
           LV S  S + N    + ++  + K    +  + ++ +M +  + PD+VT  V+V    +A
Sbjct: 146 LVFSSNS-EVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRA 204

Query: 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
           G+ + A    +S+ S G +P    YNS++     +G       +   M   G+      +
Sbjct: 205 GDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSF 264

Query: 366 LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
             L+  F + G++  A +I   MR    +P L S + L+  + + G  D A +    M  
Sbjct: 265 TILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRC 324

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
            G  PD      +I  + +  L+  AL +  E+   G  P   TY  L++ L + + + +
Sbjct: 325 FGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLD 384

Query: 486 AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERI 543
           AE LL ++ E G  P      +L   Y   G   KALQ   F     +++ PD   +  +
Sbjct: 385 AEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQL--FDTMLNQRLRPDIVTYNTL 442

Query: 544 INGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQT 583
           I+G+   G L  A  +   M ++    +      LI S  
Sbjct: 443 IDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHC 482



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 109/217 (50%), Gaps = 2/217 (0%)

Query: 218 LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L+P  + +  L+D + R+ +      + + + S E F  +V  YS LID+H ++  +EDA
Sbjct: 432 LRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHV-TYSILIDSHCEKGQVEDA 490

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
              L +M   GI+P+I+T   ++  Y ++GN+ + ++  + +  +   PD   YN++I  
Sbjct: 491 FGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHG 550

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           Y+   +      L++MM    ++     Y  L+  F+  G+V+ AG I   M  +  +P 
Sbjct: 551 YIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPD 610

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
             +   ++  +  AG+  +A    D M++ G  PDD+
Sbjct: 611 RYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAPDDK 647



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 98/216 (45%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
            +  + ++  Y+ LID   ++  L+ A  +   M+   I P+ VT ++L+  + + G ++
Sbjct: 429 NQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVE 488

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A    + + + G  P+   YNS+I  Y  +G    G   +  M+ + +      Y  L+
Sbjct: 489 DAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLI 548

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
             + +   +  A ++ N+M  E+ QP + +  +L+  +   G+  +A   F+ M   G +
Sbjct: 549 HGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIE 608

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
           PD     SMI  +       +A  L  E+ + GF P
Sbjct: 609 PDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAP 644



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 117/274 (42%), Gaps = 6/274 (2%)

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           +L+  Y+++     A EAF  +  H         N+++ A   AG P L      ++ +S
Sbjct: 91  LLIRTYTQSRKPREAFEAFRLILDHRVPIPAAASNALLAALSRAGWPHLAADAYRLVFSS 150

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
             E +      ++ ++ +  +      + + M      P + +  ++V+A  +AGD + A
Sbjct: 151 NSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAA 210

Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476
            +  D M+  G KP      S++    +  + DKA  +  E++  G  P   ++T+L+  
Sbjct: 211 MALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGG 270

Query: 477 LGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFL-EAKKEQM 535
             R+  I EA ++  ++   G  P       L  ++AR G   K   A+ +L E +   +
Sbjct: 271 FCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRG---KMDHAMAYLREMRCFGL 327

Query: 536 GPDD--FERIINGLLAGGFLQDAQRVHGLMEAQG 567
            PD   +  +I G    G + DA RV   M   G
Sbjct: 328 VPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCG 361


>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
 gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
          Length = 698

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 140/315 (44%), Gaps = 4/315 (1%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++ E   + N+  ++ +++   K   +EDA ++  +M + G+ PD V+   LV  Y K G
Sbjct: 217 MMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVG 276

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
               A   F  +   G  PD   + S+I     AG  +  + LV  M   G++ +E  + 
Sbjct: 277 CSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFT 336

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           AL+  F + G +  A      MR    QP++     L+  Y   G  D+AR     M   
Sbjct: 337 ALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAK 396

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G KPD    +++++AY K      A  L  ++ ++G  P   TY+ L+  L   + + +A
Sbjct: 397 GVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDA 456

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERII 544
             L   +  LG  P      SL D + + G  ++AL      E  K  + PD   +  +I
Sbjct: 457 HVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHD--EMVKAGVLPDVVTYSVLI 514

Query: 545 NGLLAGGFLQDAQRV 559
           NGL      ++AQR+
Sbjct: 515 NGLSKSARTKEAQRL 529



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 88/370 (23%), Positives = 154/370 (41%), Gaps = 50/370 (13%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+  + K  C  +A  +  +M   GI+PD+VT T L+H+  KAGNL+RA      +R
Sbjct: 265 YNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMR 324

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G Q ++  + ++I  +   G     +  V  M    I+ S   Y AL+  +   G + 
Sbjct: 325 ERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMD 384

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGD-----------------PD-------- 414
            A ++   M  +  +P + + + ++ AY + GD                 PD        
Sbjct: 385 EARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLI 444

Query: 415 ----------QARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
                      A   F  MI LG +PD+    S+I  + K+  +++AL+L  E+ K G  
Sbjct: 445 RVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVL 504

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP---------------FKIQVSLC 509
           P   TY+VL++ L +     EA++LL K+      P                 K  ++L 
Sbjct: 505 PDVVTYSVLINGLSKSARTKEAQRLLFKLYHEEPVPANIKYDALMRCCRNAELKSVLALL 564

Query: 510 DMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
             +   G+  +A +    +  +   +    +  +I+G    G +  A   H  M   GFA
Sbjct: 565 KGFCMKGLMNEADKVYQSILDRNWNLDGSVYSVLIHGHCREGNVMKALSFHKQMLQCGFA 624

Query: 570 ASERLKVALI 579
            +    ++LI
Sbjct: 625 PNSTSTISLI 634



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 131/281 (46%), Gaps = 1/281 (0%)

Query: 287 GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLG 346
           G  P ++    ++   S A +L  A+  F+S+ S G  P+   YN ++ A    G  K  
Sbjct: 118 GYAPSVLAYNAVLLALSDA-SLPSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEA 176

Query: 347 MSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA 406
           +S++  M  +G + +   Y  L+ +F + G+V  A ++ ++MR    +P L +   +V  
Sbjct: 177 LSVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNG 236

Query: 407 YGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG 466
             +AG  + AR  FD M++ G  PD     +++  Y K     +AL++  E+ + G  P 
Sbjct: 237 ICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPD 296

Query: 467 PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALG 526
             T+T L+  + +   +  A  L+ ++ E G         +L D + + G    AL A+ 
Sbjct: 297 VVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLAVR 356

Query: 527 FLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
            +   + Q     +  +ING    G + +A+ +   MEA+G
Sbjct: 357 EMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKG 397



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 127/295 (43%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           L  A R    M  +G+ P++ T  +LV      G+   A      +R  G  P+   YN+
Sbjct: 138 LPSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSVLRDMRGAGCDPNAVTYNT 197

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           ++ A+  AG+      LVDMM   G++ +   + +++    + G +  A ++ + M  E 
Sbjct: 198 LVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEG 257

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P   S   LV  Y + G   +A S F  M R G  PD     S+I    K   L++A+
Sbjct: 258 LAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAV 317

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
            L+ E+ + G +    T+T L+D   +   +++A   + ++ +    P      +L + Y
Sbjct: 318 GLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGY 377

Query: 513 ARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
              G   +A + +  +EAK  +     +  I++     G    A +++  M   G
Sbjct: 378 CMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENG 432



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 119/268 (44%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ L+ A       ++A  +L+ M   G  P+ VT   LV  + +AG +DRA+   
Sbjct: 156 NVYTYNILVRALCGRGHRKEALSVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLV 215

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + +R  G +P+   +NS++     AG+ +    + D M+  G+      Y  L+  + + 
Sbjct: 216 DMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKV 275

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G    A  +   M  +   P + + T L+    +AG+ ++A      M   G + ++   
Sbjct: 276 GCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITF 335

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I  + KK  LD AL  + E+ +   +P    Y  L++    +  ++EA +L+ ++  
Sbjct: 336 TALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEA 395

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQ 523
            G  P      ++   Y + G    A Q
Sbjct: 396 KGVKPDVVTYSTILSAYCKNGDTHSAFQ 423



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 55/253 (21%), Positives = 116/253 (45%), Gaps = 15/253 (5%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  YS ++ A+ K      A ++ ++M ENG++PD +T + L+ +  +   L  A   F
Sbjct: 401 DVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLF 460

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           +++ S G QPD+  Y S+I  +   G  +  +SL D M+ +G+      Y  L+   ++ 
Sbjct: 461 KNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKS 520

Query: 376 GDVRGAGQITNIMRIEEFQPT---------------LESCTLLVEAYGQAGDPDQARSNF 420
              + A ++   +  EE  P                L+S   L++ +   G  ++A   +
Sbjct: 521 ARTKEAQRLLFKLYHEEPVPANIKYDALMRCCRNAELKSVLALLKGFCMKGLMNEADKVY 580

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
             ++      D    + +I  + ++  + KAL+   ++ + GF P   +   L+  L   
Sbjct: 581 QSILDRNWNLDGSVYSVLIHGHCREGNVMKALSFHKQMLQCGFAPNSTSTISLIRGLFEK 640

Query: 481 QLINEAEQLLGKI 493
            ++ EA+Q++ ++
Sbjct: 641 GMVVEADQVIQQL 653



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/260 (22%), Positives = 99/260 (38%), Gaps = 40/260 (15%)

Query: 322 GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGA 381
           G+ P    YN++++A  +A  P       D M++ G+  +   Y  L+R+    G  + A
Sbjct: 118 GYAPSVLAYNAVLLALSDASLPS-ARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEA 176

Query: 382 GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441
             +   MR     P   +   LV A+ +AG+ D+A    D M   G KP+     S++  
Sbjct: 177 LSVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNG 236

Query: 442 YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
             K   ++ A  +  E+ K+G  P   +Y  LV                           
Sbjct: 237 ICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGG------------------------- 271

Query: 502 FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRV 559
                     Y + G   +AL    F E  ++ + PD   F  +I+ +   G L+ A  +
Sbjct: 272 ----------YCKVGCSHEALSV--FAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGL 319

Query: 560 HGLMEAQGFAASERLKVALI 579
              M  +G   +E    ALI
Sbjct: 320 VREMRERGLQMNEITFTALI 339



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 93/223 (41%), Gaps = 15/223 (6%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LID H KE  +E A  +  +M + G++PD+VT +VL++  SK+     A+     L 
Sbjct: 475 YTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRLLFKLY 534

Query: 320 SHGFQPDKKVYNSMIMAYVNA----------GQPKLG-MSLVDMMITSGIERS----EEI 364
                P    Y++++    NA          G    G M+  D +  S ++R+      +
Sbjct: 535 HEEPVPANIKYDALMRCCRNAELKSVLALLKGFCMKGLMNEADKVYQSILDRNWNLDGSV 594

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
           Y  L+    + G+V  A      M    F P   S   L+    + G   +A      ++
Sbjct: 595 YSVLIHGHCREGNVMKALSFHKQMLQCGFAPNSTSTISLIRGLFEKGMVVEADQVIQQLL 654

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGP 467
                 D   + ++I    K+  +D  L++L  + +DG  P P
Sbjct: 655 NCCSLADAEASKALIDLNLKEGNVDAVLDVLHGMARDGLLPSP 697


>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 1219

 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 111/224 (49%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ +I+   KE  L+ A     +M + GI+P++VT + ++    KA  +D+A E  
Sbjct: 198 DVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVL 257

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
            S+  +G  P+ + YNS++  Y ++GQPK  +  +  M + G+E     Y +L+    + 
Sbjct: 258 TSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKN 317

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G    A ++ + M     +P + +   L++ Y   G   +     D M+R G  P+    
Sbjct: 318 GRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVF 377

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
           + +I AY K+  +D+A+ +  ++ + G  P   TY  ++  L +
Sbjct: 378 SILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCK 421



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 89/383 (23%), Positives = 169/383 (44%), Gaps = 12/383 (3%)

Query: 195 TDKILSLEKEEDPSPLLAEWKELLQ----PSRIDWINLLDRLREQNTQLYFKVAELVLS- 249
           T  I    KE D       + E+L     P+ + + +++  L +   Q   K  E++ S 
Sbjct: 203 TTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCK--AQAMDKAMEVLTSM 260

Query: 250 -EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNL 308
            +     N R Y+ ++  +      ++A   LKKM+ +G+ PD+VT   L+    K G  
Sbjct: 261 VKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRC 320

Query: 309 DRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLAL 368
             A++ F+S+   G +P+   Y +++  Y   G       L+D+M+ +GI  +  ++  L
Sbjct: 321 TEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSIL 380

Query: 369 LRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH 428
           + ++A+ G V  A  + + MR +   P   +   ++    ++G  + A   F+ MI    
Sbjct: 381 ICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERL 440

Query: 429 KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQ 488
            P +    S+I +    +  DKA  L+LE+   G       +  ++D   +   + E+E+
Sbjct: 441 SPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEK 500

Query: 489 LLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIING 546
           L   +  +G  P      +L D Y  AG   +A + L  + +    M PD   +  +ING
Sbjct: 501 LFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVG--MKPDCVTYNTLING 558

Query: 547 LLAGGFLQDAQRVHGLMEAQGFA 569
                 ++DA  +   ME+ G +
Sbjct: 559 YCKISRMEDALVLFREMESSGVS 581



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 140/314 (44%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           +S LI A+AK+  ++ A  +  KM + G+ PD VT   ++ +  K+G ++ A   FE + 
Sbjct: 377 FSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMI 436

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
                P   VYNS+I +     +      L+  M+  GI      + +++ S  + G V 
Sbjct: 437 DERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVI 496

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            + ++ ++M     +P + + + L++ Y  AG  D+A      M+ +G KPD     ++I
Sbjct: 497 ESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLI 556

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             Y K + ++ AL L  E+E  G  P   TY +++  L + +    A++L   I+E G  
Sbjct: 557 NGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQ 616

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
                   +     +  +  +AL+    L     Q+    F  +I  LL  G   +A+ +
Sbjct: 617 LELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDL 676

Query: 560 HGLMEAQGFAASER 573
              + A G     R
Sbjct: 677 FAALSANGLVPDVR 690



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 99/218 (45%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++ +ID+H KE  + ++E++   M   G+ PDI+T + L+  Y  AG +D A +   S+ 
Sbjct: 482 FNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMV 541

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           S G +PD   YN++I  Y    + +  + L   M +SG+      Y  +L+   Q     
Sbjct: 542 SVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTA 601

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++   +     Q  L +  +++    +    D+A   F  +     + + R    MI
Sbjct: 602 AAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMI 661

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
            A  K    D+A +L   L  +G  P   TY+++ + L
Sbjct: 662 GALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENL 699



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 87/209 (41%), Gaps = 9/209 (4%)

Query: 240 YFKVAELVLSEESFQTNVR--------DYSKLIDAHAKENCLEDAERILKKMNENGIVPD 291
           + K   ++ SE+ F   VR         YS LID +     +++A ++L  M   G+ PD
Sbjct: 489 HCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPD 548

Query: 292 IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVD 351
            VT   L++ Y K   ++ A   F  + S G  PD   YN ++       +      L  
Sbjct: 549 CVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYV 608

Query: 352 MMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAG 411
            +  SG +     Y  +L    +      A ++   + + + Q    +  +++ A  + G
Sbjct: 609 GITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVG 668

Query: 412 DPDQARSNFDYMIRLGHKPDDRCTASMIA 440
             D+A+  F  +   G  PD R T S++A
Sbjct: 669 RNDEAKDLFAALSANGLVPDVR-TYSLMA 696



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 92/216 (42%), Gaps = 11/216 (5%)

Query: 187 ITGKCKLITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKVAE 245
           I G CK+         + ED   L  E +   + P  I +  +L  L +       K   
Sbjct: 556 INGYCKI--------SRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELY 607

Query: 246 LVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKA 305
           + ++E   Q  +  Y+ ++    K N  ++A R+ + +    +  +  T  +++    K 
Sbjct: 608 VGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKV 667

Query: 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
           G  D AK+ F +L ++G  PD + Y+ M    +  G  +    L   M  +G   +  + 
Sbjct: 668 GRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRML 727

Query: 366 LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCT 401
            +++R   Q GD+  AG  T +  I+E   +LE+ T
Sbjct: 728 NSIVRKLLQRGDITRAG--TYLFMIDEKHFSLEAST 761



 Score = 47.0 bits (110), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 55/252 (21%), Positives = 108/252 (42%), Gaps = 13/252 (5%)

Query: 325 PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQI 384
           P+   Y  +I +   AG+  LG + +  +I  G       +  LL+    C D R +  +
Sbjct: 89  PNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGL--CADKRTSDAM 146

Query: 385 TNIMR-IEEFQ--PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK--PDDRCTASMI 439
             ++R + +    P + S  +L++         +A      M   G    PD     ++I
Sbjct: 147 DIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVI 206

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             + K+  LDKA     E+   G  P   TY+ ++  L + Q +++A ++L  + + G  
Sbjct: 207 NGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVM 266

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFL-EAKKEQMGPD--DFERIINGLLAGGFLQDA 556
           P  +   S+   Y  +G  K   +A+GFL +   + + PD   +  +++ L   G   +A
Sbjct: 267 PNCRTYNSIVHGYCSSGQPK---EAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEA 323

Query: 557 QRVHGLMEAQGF 568
           +++   M  +G 
Sbjct: 324 RKMFDSMTKRGL 335


>gi|449530367|ref|XP_004172167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like, partial [Cucumis sativus]
          Length = 564

 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 111/219 (50%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
            V  Y+ LI    ++  +E AE+IL +M   G+ P+  T T ++H Y+  G+  +A   F
Sbjct: 227 TVHTYNALILGLVEKRKMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFAYF 286

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             LR  G Q D   Y +++ A   +G+ +  +++   M    I R+  IY  L+  +A+ 
Sbjct: 287 TKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIYNILIDGWARR 346

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           GDV  A  +   M+ E  QP + + T  + A  +AGD  +A    + M  +G KP+ +  
Sbjct: 347 GDVWEAADLMQQMKREGVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTY 406

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
            ++I  + + +L +KAL+   E++  G +P  A Y  L+
Sbjct: 407 TTLINGWARASLPEKALSCFEEMKLSGLKPDRAVYHCLM 445



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 133/317 (41%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E+    N   Y  +I A+ +   ++ AE ++++M E GI   I     ++  Y+  G+ D
Sbjct: 11  EKHSSLNAIIYGNIIYAYCQRCNMDKAEALVREMEEEGIDAPIDIYHTMMDGYTMVGDED 70

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
           +    FE  +  G  P    Y  +I  Y   G+    + +   M  +GI+ + + Y  L+
Sbjct: 71  KCLLVFERFKECGLNPSVITYGCLINLYAKLGKVSKALEVSKEMEHAGIKHNMKTYSMLI 130

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
             F +  D   A  I   +  +  +P +     ++ A+   G  D+A      M +  HK
Sbjct: 131 NGFLKLKDWANAFAIFEDLIKDGIKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRHK 190

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           P  R    +I  + +K  + KAL++   +   G  P   TY  L+  L   + + +AEQ+
Sbjct: 191 PTTRTFMPIIHGFARKGEMKKALDVFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQI 250

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLA 549
           L +++  G +P      ++   YA  G   KA      L  +  Q+    +E ++     
Sbjct: 251 LDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFAYFTKLRDEGLQLDVYTYEALLKACCK 310

Query: 550 GGFLQDAQRVHGLMEAQ 566
            G +Q A  V   M AQ
Sbjct: 311 SGRMQSALAVTKEMSAQ 327



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 90/404 (22%), Positives = 170/404 (42%), Gaps = 48/404 (11%)

Query: 200 SLEKEEDPSPLLAE-WKEL-LQPSRIDW---INLLDRLREQNTQLYFKVAELVLSEESFQ 254
           ++  +ED   L+ E +KE  L PS I +   INL  +L + +  L  +V++  +     +
Sbjct: 64  TMVGDEDKCLLVFERFKECGLNPSVITYGCLINLYAKLGKVSKAL--EVSK-EMEHAGIK 120

Query: 255 TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA 314
            N++ YS LI+   K     +A  I + + ++GI PD+V    ++  +   G +DRA   
Sbjct: 121 HNMKTYSMLINGFLKLKDWANAFAIFEDLIKDGIKPDVVLYNNIITAFCGMGKMDRAVCT 180

Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
            + ++    +P  + +  +I  +   G+ K  + + DMM  SG   +   Y AL+    +
Sbjct: 181 VKEMQKQRHKPTTRTFMPIIHGFARKGEMKKALDVFDMMRMSGCIPTVHTYNALILGLVE 240

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
              +  A QI + M +    P   + T ++  Y   GD  +A + F  +   G + D   
Sbjct: 241 KRKMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFAYFTKLRDEGLQLDVYT 300

Query: 435 TASMIAAYGKKNLLDKAL-----------------------------------NLLLELE 459
             +++ A  K   +  AL                                   +L+ +++
Sbjct: 301 YEALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIYNILIDGWARRGDVWEAADLMQQMK 360

Query: 460 KDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEK 519
           ++G +P   TYT  ++   +   +  A + + ++  +G  P  K   +L + +ARA + +
Sbjct: 361 REGVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLINGWARASLPE 420

Query: 520 KALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLM 563
           KAL    F E K   + PD   R +   L    L  A   HG +
Sbjct: 421 KALSC--FEEMKLSGLKPD---RAVYHCLMTSLLSRATVAHGCI 459



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/250 (20%), Positives = 108/250 (43%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + EE     +  Y  ++D +      +    + ++  E G+ P ++T   L+++Y+K G 
Sbjct: 44  MEEEGIDAPIDIYHTMMDGYTMVGDEDKCLLVFERFKECGLNPSVITYGCLINLYAKLGK 103

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           + +A E  + +   G + + K Y+ +I  ++         ++ + +I  GI+    +Y  
Sbjct: 104 VSKALEVSKEMEHAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDLIKDGIKPDVVLYNN 163

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++ +F   G +  A      M+ +  +PT  +   ++  + + G+  +A   FD M   G
Sbjct: 164 IITAFCGMGKMDRAVCTVKEMQKQRHKPTTRTFMPIIHGFARKGEMKKALDVFDMMRMSG 223

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P      ++I    +K  ++KA  +L E+   G  P   TYT ++     L    +A 
Sbjct: 224 CIPTVHTYNALILGLVEKRKMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAF 283

Query: 488 QLLGKISELG 497
               K+ + G
Sbjct: 284 AYFTKLRDEG 293



 Score = 45.4 bits (106), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 43/216 (19%), Positives = 88/216 (40%)

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
           IY  ++ ++ Q  ++  A  +   M  E     ++    +++ Y   GD D+    F+  
Sbjct: 20  IYGNIIYAYCQRCNMDKAEALVREMEEEGIDAPIDIYHTMMDGYTMVGDEDKCLLVFERF 79

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483
              G  P       +I  Y K   + KAL +  E+E  G +    TY++L++   +L+  
Sbjct: 80  KECGLNPSVITYGCLINLYAKLGKVSKALEVSKEMEHAGIKHNMKTYSMLINGFLKLKDW 139

Query: 484 NEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERI 543
             A  +   + + G  P   +  ++   +   G   +A+  +  ++ ++ +     F  I
Sbjct: 140 ANAFAIFEDLIKDGIKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRHKPTTRTFMPI 199

Query: 544 INGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
           I+G    G ++ A  V  +M   G   +     ALI
Sbjct: 200 IHGFARKGEMKKALDVFDMMRMSGCIPTVHTYNALI 235


>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
 gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
          Length = 1636

 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 151/334 (45%), Gaps = 7/334 (2%)

Query: 252  SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311
            S   +V  YS ++D+  K   ++DA R+++ M   G  P++VT + L+H   KAG LD A
Sbjct: 943  SCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEA 1002

Query: 312  KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
                + +   G  P+   YN++I  +   G+      L++ M+  G + +   Y  LL +
Sbjct: 1003 TALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDA 1062

Query: 372  FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
            F +CG    A  +  +M  + + P L +   L++ + +  + ++A      MI+ G  P+
Sbjct: 1063 FCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPN 1122

Query: 432  DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
                 ++IA   K   + + + LL ++  +   P   T+  ++D + +   ++ A +L  
Sbjct: 1123 VVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFN 1182

Query: 492  KISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLE--AKKEQMGPD--DFERIINGL 547
             I E G  P      SL     ++   ++  QA   L    +K+   PD   +  +I+GL
Sbjct: 1183 LIQESGCTPNLVTYNSLVHGLCKS---RRFDQAEYLLREMTRKQGCSPDIITYNTVIDGL 1239

Query: 548  LAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
                 +  A ++   M + G A  +     +ISS
Sbjct: 1240 CKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISS 1273



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 146/311 (46%), Gaps = 6/311 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +I+  +K + L+DA R+L++M +NG  P++ +   ++H + KA  ++ A    E + 
Sbjct: 233 YNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMV 292

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G  PD   Y ++I       Q      ++D MI  G + +   Y  L+  F + GD+ 
Sbjct: 293 TRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLD 352

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
           GA ++   M    ++P   +   ++  + +  D ++A      MI+ G  PD    +++I
Sbjct: 353 GAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTII 412

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
           + + K   L +A +LL ++ + G  P  A  + L+D L +   I+ A++LL     +  A
Sbjct: 413 SGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCA 472

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAK-KEQMGPD--DFERIINGLLAGGFLQDA 556
           P       L     +A   K+  +A  +L+   K +  PD   +  +++GL     + DA
Sbjct: 473 PDVVAYSILIHALCKA---KRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDA 529

Query: 557 QRVHGLMEAQG 567
             +   M A G
Sbjct: 530 FLLFDRMRAAG 540



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 139/304 (45%), Gaps = 1/304 (0%)

Query: 254  QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
            Q NV  Y+ L+DA  K    EDA  +++ M E G VP++ T   L+ M+ K   ++RA +
Sbjct: 1050 QPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQ 1109

Query: 314  AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
               S+   G  P+   YN++I     A +   G+ L++ M+++        +  ++ +  
Sbjct: 1110 LLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMC 1169

Query: 374  QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR-LGHKPDD 432
            +   V  A ++ N+++     P L +   LV    ++   DQA      M R  G  PD 
Sbjct: 1170 KTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDI 1229

Query: 433  RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
                ++I    K   +D+A  L L++  DG  P   TY++++  L + + ++EA  +L  
Sbjct: 1230 ITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLEL 1289

Query: 493  ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
            + + G  P      +L D + + G   KAL+ L  L +K        F   I+ L   G 
Sbjct: 1290 MLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGR 1349

Query: 553  LQDA 556
            L+ A
Sbjct: 1350 LRQA 1353



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 139/317 (43%), Gaps = 6/317 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ +I+   K + +++A R++ KM + G  P+++T   LV  + + G+LD A E  
Sbjct: 299 DVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELV 358

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G++P+   YN+++  +      +    ++ MMI +G       Y  ++  F + 
Sbjct: 359 RKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKA 418

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +R A  +   M     +P +   + L++A  +A   D A+      I +   PD    
Sbjct: 419 GKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAY 478

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
           + +I A  K   L +A + L  + K+   P   TY  +VD L + + IN+A  L  ++  
Sbjct: 479 SILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRA 538

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE-QMGPD--DFERIINGLLAGGF 552
            G  P       +   + +   +     A   LE  KE +  PD   +  +INGL   G 
Sbjct: 539 AGVMPDVVTYSIVIHSFCK---DNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGT 595

Query: 553 LQDAQRVHGLMEAQGFA 569
           +  A  V   M   G A
Sbjct: 596 VDKAFDVFQEMLGCGCA 612



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 122/299 (40%), Gaps = 52/299 (17%)

Query: 242  KVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM 301
             V EL+L +  F      Y  LID   K   L+ A  IL+ +   G  PD+VT ++ +  
Sbjct: 1285 NVLELML-KNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDW 1343

Query: 302  YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS 361
             SK G L +A E  E++   G  PD   YN+++  + +A   +  + L ++M   G E  
Sbjct: 1344 LSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQCGCEPD 1403

Query: 362  EEIYLALLRSFAQ-------CGDVRGAGQITNIMRIEEFQPTLES-----------CTLL 403
               Y  L+              +V  +   T      E    LE+           C + 
Sbjct: 1404 NATYTTLVGHLVDKKSYKDLLAEVSKSMVDTGFKLNHELSSKLEASIEVEADVRLGCAI- 1462

Query: 404  VEAYGQAGDPDQARSNFDYM-------------IRLGHK------------------PDD 432
            V+ +G+ G P  AR  F+ M             + + HK                  PD 
Sbjct: 1463 VDMFGKCGSPQDARKVFEGMDQRNVVLWSAMLGVYVFHKQEEQAFGLWRVMGLEGVEPDA 1522

Query: 433  RCTASMIAAYGKKNLLDKALNLLLELEKD-GFEPGPATYTVLVDWLGRLQLINEAEQLL 490
                S++       LLD A++  + + +D G EPG   ++ ++D LGRL L+NEAE L+
Sbjct: 1523 VTFLSLLTMCCHAGLLDAAVDEFVSISRDYGLEPGVDHFSCVIDLLGRLGLVNEAEDLM 1581



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 76/355 (21%), Positives = 153/355 (43%), Gaps = 39/355 (10%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           +   Q NV  Y  L+D   +   L+ A  +++KM E G  P+ +T   ++H++ +  +++
Sbjct: 328 QRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDME 387

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
           RA +  + +   G  PD   Y+++I  +  AG+ +    L++ MI  G          L+
Sbjct: 388 RAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLI 447

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
            +  +   +  A ++  +    +  P + + ++L+ A  +A    +A S  D M++    
Sbjct: 448 DALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCY 507

Query: 430 PD------------------------DRCTAS-----------MIAAYGKKNLLDKALNL 454
           PD                        DR  A+           +I ++ K N LD A  +
Sbjct: 508 PDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKM 567

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
           L  +++    P   TY+ L++ L +   +++A  +  ++   G AP      +L D   +
Sbjct: 568 LERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCK 627

Query: 515 AGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQDAQRVHGLMEAQG 567
               ++A + L  +  +K+   PD   +  +INGL     L++A RV   M+ +G
Sbjct: 628 INKVEQAAEMLEIM--RKQSCTPDSITYTCLINGLCNASRLEEAWRVLREMKDKG 680



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 109/243 (44%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + +  F  NV  Y+ ++    K N +E+A  +L++M   G  PD+V+ T +++   K   
Sbjct: 256 MVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQ 315

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D A    + +   G QP+   Y +++  +   G     + LV  M   G   +   Y  
Sbjct: 316 VDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNN 375

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++  F +  D+  A Q+  +M      P   + + ++  + +AG   +A    + MIR G
Sbjct: 376 IMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRG 435

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            +PD  C +++I A  K   +D A  LL         P    Y++L+  L + + + EAE
Sbjct: 436 CRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAE 495

Query: 488 QLL 490
             L
Sbjct: 496 SWL 498



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 138/304 (45%), Gaps = 7/304 (2%)

Query: 247  VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMN-ENGIVPDIVTSTVLVHMYSKA 305
            ++ E     N+  Y+ L+    K    + AE +L++M  + G  PDI+T   ++    K+
Sbjct: 1183 LIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKS 1242

Query: 306  GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
              +DRA + F  + S G  PD   Y+ +I +           +++++M+ +G +     Y
Sbjct: 1243 KRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITY 1302

Query: 366  LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
              L+  F + G++  A +I  ++  +   P + + ++ ++   + G   QA    + M+R
Sbjct: 1303 GTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLR 1362

Query: 426  LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
             G  PD     +++  +   +L + A++L   + + G EP  ATYT LV   G L     
Sbjct: 1363 AGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQCGCEPDNATYTTLV---GHLVDKKS 1419

Query: 486  AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALG--FLEAKKEQMGPDDFERI 543
             + LL ++S+      FK+   L      A IE +A   LG   ++   +   P D  ++
Sbjct: 1420 YKDLLAEVSKSMVDTGFKLNHEL-SSKLEASIEVEADVRLGCAIVDMFGKCGSPQDARKV 1478

Query: 544  INGL 547
              G+
Sbjct: 1479 FEGM 1482



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 138/313 (44%), Gaps = 9/313 (2%)

Query: 249  SEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNL 308
            S+E +  +    + L+ A  +    +DA ++ +  N+    P++ T T+L+H   +AG++
Sbjct: 836  SQEGYNHDTYTCNCLLQALLRLKRPKDALQVYR--NKLCCSPNMFTFTILIHGLCRAGDI 893

Query: 309  DRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI-YLA 367
              A E  + +  HG   +  ++N +I    +A +    + L   M  SG    +   Y  
Sbjct: 894  GTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSALELFKEMEESGSCPPDVFTYST 953

Query: 368  LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
            ++ S  + G V  A ++   M  +   P + + + L+    +AG  D+A +    M R G
Sbjct: 954  IVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSG 1013

Query: 428  HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
              P+     ++I  + K   +D+A +LL E+   G +P   TYTVL+D   +     +A 
Sbjct: 1014 CSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAI 1073

Query: 488  QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
             L+  + E G  P      SL DM+ +    ++A Q L  +  K        +  +I GL
Sbjct: 1074 GLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGL 1133

Query: 548  LAGGFLQDAQRVH 560
                    A +VH
Sbjct: 1134 C------KATKVH 1140



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 111/245 (45%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V   S LIDA  K   ++ A+ +L+        PD+V  ++L+H   KA  L  A+   
Sbjct: 439 DVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWL 498

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + +  +   PD   YNS++     + +      L D M  +G+      Y  ++ SF + 
Sbjct: 499 DVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKD 558

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
            ++  A ++   M+  +  P + + + L+    +AG  D+A   F  M+  G  P+    
Sbjct: 559 NNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTY 618

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I    K N +++A  +L  + K    P   TYT L++ L     + EA ++L ++ +
Sbjct: 619 NTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLCNASRLEEAWRVLREMKD 678

Query: 496 LGEAP 500
            G  P
Sbjct: 679 KGCLP 683



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 109/236 (46%), Gaps = 1/236 (0%)

Query: 256  NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVP-DIVTSTVLVHMYSKAGNLDRAKEA 314
            NV  ++ +I        L+ A  + K+M E+G  P D+ T + +V    K+G +D A   
Sbjct: 911  NVILHNVVIKGLCSARKLDSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRL 970

Query: 315  FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
             E + S G  P+   Y+S++     AG+     +L+  M  SG   +   Y  ++    +
Sbjct: 971  VEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCK 1030

Query: 375  CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
             G +  A  +   M     QP + + T+L++A+ + G  + A    + M+  G+ P+   
Sbjct: 1031 LGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFT 1090

Query: 435  TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
              S++  + KK+ +++A  LL  + + G  P   +Y  ++  L +   ++E   LL
Sbjct: 1091 YNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLL 1146



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 102/227 (44%)

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL 349
           PD VT   +++  SK+  LD A    E +  +GF P+   YN+++  +  A + +  + L
Sbjct: 228 PDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWL 287

Query: 350 VDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409
           ++ M+T G       Y  ++    +   V  A ++ + M     QP + +   LV+ + +
Sbjct: 288 LEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCR 347

Query: 410 AGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPAT 469
            GD D A      M   G++P+     +++  + ++N +++A  +L  + + G  P    
Sbjct: 348 VGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAIN 407

Query: 470 YTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
           Y+ ++    +   + EA  LL ++   G  P      +L D   +A 
Sbjct: 408 YSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAA 454



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 92/213 (43%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           V+ +     +V  Y+ ++D   K   + DA  +  +M   G++PD+VT ++++H + K  
Sbjct: 500 VMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDN 559

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           NLD A +  E ++     PD   Y+++I     AG       +   M+  G   +   Y 
Sbjct: 560 NLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYN 619

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+    +   V  A ++  IMR +   P   + T L+     A   ++A      M   
Sbjct: 620 TLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLCNASRLEEAWRVLREMKDK 679

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELE 459
           G  PD     +++ A  K N L+    LL E+E
Sbjct: 680 GCLPDRMTYGTLLRALQKTNNLELVEQLLKEME 712



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 110/265 (41%), Gaps = 6/265 (2%)

Query: 242  KVAELVLSEESFQTN-----VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTST 296
            KV E VL  E   +N     +  ++ +IDA  K   ++ A  +   + E+G  P++VT  
Sbjct: 1138 KVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYN 1197

Query: 297  VLVHMYSKAGNLDRAKEAF-ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMIT 355
             LVH   K+   D+A+    E  R  G  PD   YN++I     + +      L   M++
Sbjct: 1198 SLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLS 1257

Query: 356  SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ 415
             G+   +  Y  ++ S  +   +  A  +  +M    F P   +   L++ + + G+ D+
Sbjct: 1258 DGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDK 1317

Query: 416  ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
            A      ++  G  PD    +  I    K+  L +A  LL  + + G  P   TY  L+ 
Sbjct: 1318 ALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLK 1377

Query: 476  WLGRLQLINEAEQLLGKISELGEAP 500
                  L  +A  L   + + G  P
Sbjct: 1378 GFCDASLTEDAVDLFEVMRQCGCEP 1402



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 82/374 (21%), Positives = 162/374 (43%), Gaps = 15/374 (4%)

Query: 211 LAEWKELLQPSRIDWINLLDRLREQNTQL-YFKVAELVLSEESFQTNVRDYSKLIDAHAK 269
           L E++  L P  +    +L RL +    L +F+ AE   + + +Q  +   + L++   K
Sbjct: 84  LDEYRGQLSPEIVG--KVLQRLIDPGAALVFFEWAE---TRDGYQHEIFCCNCLLNVLVK 138

Query: 270 ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKV 329
            +    A  + +   E     D VT + L+  + +AG +  A E F+ +   G +    V
Sbjct: 139 AHQYSQAHDLFRSRIEGQWGGDTVTYSTLISGFIRAGKILPAYELFDEMNRKGLKAHAGV 198

Query: 330 YNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389
           + S++    +AGQ    +     M +         Y  ++   ++   +  A ++   M 
Sbjct: 199 HKSILRGLCDAGQCSDAVLHFREM-SKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMV 257

Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD 449
              F P + S   ++  + +A   + A    + M+  G  PD     ++I    K + +D
Sbjct: 258 DNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVD 317

Query: 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLC 509
           +A  ++ ++ + G +P   TY  LVD   R+  ++ A +L+ K++E G  P      ++ 
Sbjct: 318 EACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIM 377

Query: 510 DMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQG 567
            ++ R    ++A Q L  +   +    PD  ++  II+G    G L++A   H L+E Q 
Sbjct: 378 HVFCRRNDMERAHQVLQMM--IQTGCPPDAINYSTIISGFCKAGKLREA---HDLLE-QM 431

Query: 568 FAASERLKVALISS 581
                R  VA +S+
Sbjct: 432 IRRGCRPDVACLST 445



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 97/235 (41%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  YS LI A  K   L +AE  L  M +N   PD+VT   +V    K+  ++ A   F
Sbjct: 474 DVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLF 533

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + +R+ G  PD   Y+ +I ++           +++ M  +        Y AL+    + 
Sbjct: 534 DRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKA 593

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G V  A  +   M      P L +   L++   +    +QA    + M +    PD    
Sbjct: 594 GTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITY 653

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
             +I      + L++A  +L E++  G  P   TY  L+  L +   +   EQLL
Sbjct: 654 TCLINGLCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRALQKTNNLELVEQLL 708



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 70/162 (43%), Gaps = 20/162 (12%)

Query: 254  QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
            Q NV  +S ++  +      E A  + + M   G+ PD VT   L+ M   AG LD A +
Sbjct: 1484 QRNVVLWSAMLGVYVFHKQEEQAFGLWRVMGLEGVEPDAVTFLSLLTMCCHAGLLDAAVD 1543

Query: 314  AFESL-RSHGFQPDKKVYNSMI-----MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
             F S+ R +G +P    ++ +I     +  VN  +        D+M+    + S   +  
Sbjct: 1544 EFVSISRDYGLEPGVDHFSCVIDLLGRLGLVNEAE--------DLMLGMPCKPSAATWNC 1595

Query: 368  LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409
            LL ++  CGD   A      +R+ E  PT  S  LL   Y Q
Sbjct: 1596 LLSAYKICGDFERA------LRVAELNPTQASYLLLSNMYAQ 1631



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 59/140 (42%), Gaps = 1/140 (0%)

Query: 233 REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDI 292
           ++ N    FK+ E  + E     +V  YS LI+   K   ++ A  + ++M   G  P++
Sbjct: 557 KDNNLDSAFKMLER-MKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNL 615

Query: 293 VTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDM 352
           VT   L+    K   +++A E  E +R     PD   Y  +I    NA + +    ++  
Sbjct: 616 VTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLCNASRLEEAWRVLRE 675

Query: 353 MITSGIERSEEIYLALLRSF 372
           M   G       Y  LLR+ 
Sbjct: 676 MKDKGCLPDRMTYGTLLRAL 695


>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
 gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
          Length = 500

 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 142/314 (45%), Gaps = 6/314 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +  + F  +V  Y+ +I A   EN L +A + L++M    + P++VT TVL+    K G 
Sbjct: 37  MVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGR 96

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D A      +R     P    YNS+I     A +      L++ M+ SG       Y  
Sbjct: 97  VDEAVALLSKMRKKCV-PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTT 155

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+  F +      A ++   +    F+P + + + L++   + G   +A   F  MI+ G
Sbjct: 156 LITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSG 215

Query: 428 H-KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
              P+     S+I+ + +   +D+A+NLL  + + G  P   TYT L++   +L  +++A
Sbjct: 216 SCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDA 275

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERII 544
             LL +++  G  P      SL D   R      A+  LG  E +++   P    +  I+
Sbjct: 276 YDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILG--EMRRKSCSPTVYTYNTIL 333

Query: 545 NGLLAGGFLQDAQR 558
           +G      L++A++
Sbjct: 334 DGYCRANQLEEARK 347



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 141/310 (45%), Gaps = 19/310 (6%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI    K     +A  +L++M  +G +PDI T T L+  + K+   D A   FE L 
Sbjct: 118 YNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLV 177

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI-YLALLRSFAQCGDV 378
           + GF+PD   Y+ +I      G+ K  + L   MI SG      + Y +L+  F + G +
Sbjct: 178 ARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKM 237

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             A  +   M      P + + T L+  + +    D A    + M R G  PD     S+
Sbjct: 238 DEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSL 297

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           +    ++N L  A+++L E+ +    P   TY  ++D   R   + EA + +  + E+ +
Sbjct: 298 MDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFM--LEEM-D 354

Query: 499 APP----FKIQV-SLCDMYARAGIEKKALQALGFL-EAKKEQMGPDD--FERIINGLLAG 550
            PP    F I +  LC +        ++ +A+  + EA++ +  PD   +  +I+GL   
Sbjct: 355 CPPNVVSFNIMIRGLCKV-------NRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCRE 407

Query: 551 GFLQDAQRVH 560
             + +A RV+
Sbjct: 408 KKVDEACRVY 417



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 116/288 (40%), Gaps = 8/288 (2%)

Query: 286 NGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKL 345
           N    D VT T L+    K   L++A      + S GF PD   Y ++I A     +   
Sbjct: 5   NSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHE 64

Query: 346 GMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVE 405
               ++ M    +  +   Y  L+    + G V  A  + + MR ++  PT  +   L+ 
Sbjct: 65  ARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMR-KKCVPTAVTYNSLIS 123

Query: 406 AYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
              +A    +A    + M+  G  PD     ++I  + K    D AL +  +L   GF P
Sbjct: 124 GLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRP 183

Query: 466 GPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQV-SLCDMYARAGIEKKALQA 524
              TY+ L+D L +   + EA  L G++ + G   P  +   SL   + R G   K  +A
Sbjct: 184 DVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMG---KMDEA 240

Query: 525 LGFLEAKKEQ-MGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
           +  LE   E    PD   +  ++NG      L DA  +   M  +G  
Sbjct: 241 MNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLT 288



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 73/323 (22%), Positives = 131/323 (40%), Gaps = 54/323 (16%)

Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311
           S   N   Y+ LI    +   +++A  +L++M E G  PD+VT T L++ + K   LD A
Sbjct: 216 SCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDA 275

Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
            +    +   G  PD   + S++                      G+ R   +       
Sbjct: 276 YDLLNQMTRKGLTPDVVTFTSLM---------------------DGLCRENRL------- 307

Query: 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI-RLGHKP 430
                    A  I   MR +   PT+ +   +++ Y +A   ++AR    +M+  +   P
Sbjct: 308 -------SDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARK---FMLEEMDCPP 357

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           +      MI    K N   +A+ L+ E  +    P    YT ++D L R + ++EA ++ 
Sbjct: 358 NVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVY 417

Query: 491 GKISELGEAPPFKIQVS-----LCDM----YARAGIEKKALQALG----FLEAKKEQMGP 537
            K+ E     P  I  S     LC+      AR  IEK  +  +G     ++A ++    
Sbjct: 418 RKMLEEPGCLPNSITYSTLVTGLCNAGMLDRARGYIEKGCVPNIGTYNLLIDAFRKANRD 477

Query: 538 DDFERIINGLLAGGF--LQDAQR 558
           +D   +++ ++  GF  +Q  QR
Sbjct: 478 EDARELLDDMVQRGFGVVQSHQR 500



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/251 (19%), Positives = 100/251 (39%), Gaps = 7/251 (2%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           ++E     +V  Y+ L++   K   L+DA  +L +M   G+ PD+VT T L+    +   
Sbjct: 247 MAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENR 306

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L  A      +R     P    YN+++  Y  A Q +       M+       +   +  
Sbjct: 307 LSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKF--MLEEMDCPPNVVSFNI 364

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR-L 426
           ++R   +      A ++    R     P +   T +++   +    D+A   +  M+   
Sbjct: 365 MIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEP 424

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G  P+    ++++       +LD+A   +    + G  P   TY +L+D   +     +A
Sbjct: 425 GCLPNSITYSTLVTGLCNAGMLDRARGYI----EKGCVPNIGTYNLLIDAFRKANRDEDA 480

Query: 487 EQLLGKISELG 497
            +LL  + + G
Sbjct: 481 RELLDDMVQRG 491


>gi|297745184|emb|CBI39176.3| unnamed protein product [Vitis vinifera]
          Length = 996

 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/361 (22%), Positives = 150/361 (41%), Gaps = 51/361 (14%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
            + F  +   YSK+I      + +++A  + ++M  N +VPD+ T T+L+  + K G L 
Sbjct: 473 SKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQ 532

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
           +A++ F+ +   G  P+   Y ++I AY+ A +      L +MM++ G   +   Y AL+
Sbjct: 533 QARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALI 592

Query: 370 RSFAQCGDVRGAGQI--------------------------------------------- 384
               + G +  A QI                                             
Sbjct: 593 DGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKV 652

Query: 385 ------TNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
                  ++M +E  +P       L++ + + G  D+A+  F  M   G+ P+    +S+
Sbjct: 653 KEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSL 712

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           I    K   LD AL +L  + ++   P    YT ++D L ++   +EA +L+  + E G 
Sbjct: 713 IDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGC 772

Query: 499 APPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQR 558
            P      ++ D + +AG   K L+ +  + AK        +  +IN   A G L DA +
Sbjct: 773 HPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQ 832

Query: 559 V 559
           +
Sbjct: 833 L 833



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 134/321 (41%), Gaps = 51/321 (15%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ LID+  K   L+ A +   +M  +G  P++VT T L+H Y KA  +  A E F
Sbjct: 514 DVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELF 573

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL------------VDMM--ITSGIERS 361
           E + S G  P+   Y ++I  +  +GQ +    +            VDM   I  G  R 
Sbjct: 574 EMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRD 633

Query: 362 EEI--YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
             I  Y AL+    +   V+ A  + ++M +E  +P       L++ + + G  D+A+  
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMV 693

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL---LE------------------- 457
           F  M   G+ P+    +S+I    K   LD AL +L   LE                   
Sbjct: 694 FTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCK 753

Query: 458 -------------LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKI 504
                        +E+ G  P   TYT ++D  G+   +++  +L+ ++   G AP F  
Sbjct: 754 VGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVT 813

Query: 505 QVSLCDMYARAGIEKKALQAL 525
              L +    AG+   A Q L
Sbjct: 814 YRVLINHCCAAGLLDDAHQLL 834



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 83/354 (23%), Positives = 153/354 (43%), Gaps = 37/354 (10%)

Query: 260 YSKLIDAHAKEN---------CL------EDAERILKKMNENGIVPDIVTSTVLVHMYSK 304
           Y +++DAH   N         CL      E A  I+++M   G +PD  T + ++ +   
Sbjct: 433 YGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCN 492

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
           A  +D A   FE ++S+   PD   Y  +I ++   G  +      D M+  G   +   
Sbjct: 493 ASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVT 552

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA-------R 417
           Y AL+ ++ +   +  A ++  +M  E   P + + T L++ + ++G  ++A       R
Sbjct: 553 YTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMR 612

Query: 418 SNFD-------YMIRLGH--KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPA 468
            N D       + I  G+   P+     +++    K + + +A +LL  +  +G EP   
Sbjct: 613 GNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHI 672

Query: 469 TYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFL 528
            Y  L+D   ++  ++EA+ +  K+SE G  P      SL D   R   +K+   AL  L
Sbjct: 673 VYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLID---RLFKDKRLDLALKVL 729

Query: 529 EAKKEQMGPDD---FERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
               E     +   +  +I+GL   G   +A R+  +ME +G   +     A+I
Sbjct: 730 SRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMI 783



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 70/343 (20%), Positives = 139/343 (40%), Gaps = 38/343 (11%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++ +E F+ +   Y+++I    + +  E+A   L +M  +  +P++VT  +L+    +  
Sbjct: 289 LIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKR 348

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            L R K     + + G  P ++++NS+I AY  +G       L+  M   G +    +Y 
Sbjct: 349 QLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYN 408

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ----------------- 409
            L+     CG+              E  P+L+   L  +AYG+                 
Sbjct: 409 ILIGGI--CGN--------------EKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLA 452

Query: 410 -----AGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
                AG  ++A S    M+  G  PD    + +I      + +D A  L  E++ +   
Sbjct: 453 RCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVV 512

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQA 524
           P   TYT+L+D   ++ L+ +A +   ++   G AP      +L   Y +A     A + 
Sbjct: 513 PDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANEL 572

Query: 525 LGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
              + ++        +  +I+G    G ++ A +++  M    
Sbjct: 573 FEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNA 615



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 118/284 (41%), Gaps = 18/284 (6%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           LE AE+   +M +  +V + V  + L      AG  ++A      + S GF PD   Y+ 
Sbjct: 426 LELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSK 485

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I    NA +      L + M ++ +      Y  L+ SF + G ++ A +  + M  + 
Sbjct: 486 VIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDG 545

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P + + T L+ AY +A     A   F+ M+  G  P+     ++I  + K   ++KA 
Sbjct: 546 CAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKAC 605

Query: 453 NLLLELE--------------KDGF--EPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
            +   +                DG   +P   TY  LVD L +   + EA  LL  +S  
Sbjct: 606 QIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVE 665

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF 540
           G  P   +  +L D + + G   +A   + F +  +   GP+ +
Sbjct: 666 GCEPNHIVYDALIDGFCKVGKLDEA--QMVFTKMSERGYGPNVY 707



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 105/256 (41%), Gaps = 5/256 (1%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           V+S E  + N   Y  LID   K   L++A+ +  KM+E G  P++ T + L+    K  
Sbjct: 661 VMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDK 720

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            LD A +    +  +   P+  +Y  MI      G+      L+ MM   G   +   Y 
Sbjct: 721 RLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYT 780

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           A++  F + G V    ++   M  +   P   +  +L+     AG  D A    D M + 
Sbjct: 781 AMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQT 840

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL---GRLQLI 483
                      +I  + ++ ++  +L LL E+ ++   P    Y +L+D     GRL+L 
Sbjct: 841 YWPKHMAGYRKVIEGFNREFII--SLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELA 898

Query: 484 NEAEQLLGKISELGEA 499
            E  + +   +    A
Sbjct: 899 LELHKEMSSCTSYSAA 914



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 77/372 (20%), Positives = 139/372 (37%), Gaps = 58/372 (15%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+    + + L+ A  + ++M+++G   D  T    VH+  KAG   R +EA   + 
Sbjct: 235 YNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAG---RWREALALIE 291

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
              F+ D  +Y  MI     A   +  M  +  M +S    +   Y  LL     CG +R
Sbjct: 292 KEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILL-----CGCLR 346

Query: 380 G-----AGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
                   +I ++M  E   P+      L+ AY ++GD   A      M   G +P    
Sbjct: 347 KRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVV 406

Query: 435 TASMIA-------------------AYGK-------------KNL---------LDKALN 453
              +I                    AYG+              NL          +KA +
Sbjct: 407 YNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYS 466

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
           ++ E+   GF P  +TY+ ++  L     ++ A  L  ++      P       L D + 
Sbjct: 467 IIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFC 526

Query: 514 RAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAAS 571
           + G+ ++A +   F E  ++   P+   +  +I+  L    +  A  +  +M ++G   +
Sbjct: 527 KVGLLQQARK--WFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPN 584

Query: 572 ERLKVALISSQT 583
                ALI    
Sbjct: 585 VVTYTALIDGHC 596



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 47/233 (20%), Positives = 87/233 (37%), Gaps = 12/233 (5%)

Query: 251 ESFQTNVRD-----YSKLIDAHAKENCLEDAERI----LKKMNENGIVPDIVTSTVLVHM 301
           E F   +RD       KL++   ++ C      +    L ++ + G  P  +T   LV +
Sbjct: 182 EQFLREIRDEDKEILGKLLNVLIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRV 241

Query: 302 YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS 361
           + +A  LD A      +   GF  D       +     AG+ +  ++L++       +  
Sbjct: 242 FLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREALALIE---KEEFKLD 298

Query: 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421
             IY  ++    +      A    + MR     P + +  +L+    +     + +    
Sbjct: 299 TVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILS 358

Query: 422 YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
            MI  G  P  R   S+I AY +      A  LL ++   G +PG   Y +L+
Sbjct: 359 MMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILI 411


>gi|255546465|ref|XP_002514292.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546748|gb|EEF48246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 608

 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/339 (21%), Positives = 160/339 (47%), Gaps = 11/339 (3%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L E+  +  +  Y+ L+ A  K    E    ++ K+ ENG+ PD +    +++ +S++GN
Sbjct: 84  LVEDGHRPTLITYTTLVAALTKLKHFESIFLLISKVEENGMKPDSILYNAMINAFSESGN 143

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG-IERSEEIYL 366
           +  A + F+ ++  G +P    +N++I  Y NAG+P+ G+ ++ +M   G ++ ++  Y 
Sbjct: 144 VKEAMKIFQKMKDTGCKPTTSTFNTLIKGYGNAGKPEEGLKMLHLMSLDGSVKPNDRTYN 203

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+R++    ++  A  + + M     QP + +  +L  AY Q G+  +A    D ++ +
Sbjct: 204 ILVRAWCSKKNIEEAWNVLHKMVASGIQPDVVTYNILARAYAQKGETLRAE---DLILEM 260

Query: 427 GHK---PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483
            ++   P++R    ++  Y K+  + +AL  +  +++ G  P    +  L+     +   
Sbjct: 261 QYEKVAPNERTCGIIVNGYCKEGNMIEALRFVYRMKELGVHPNLVIFNSLIKGFLDITDT 320

Query: 484 NEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFE 541
           +  ++ L  + E G  P      ++ + ++ AG+  K  +   F +  K  + PD   F 
Sbjct: 321 DGVDEALTLMEEYGVKPDVITFSTIMNAWSSAGLMDKCQEI--FNDMAKAGIEPDIHAFS 378

Query: 542 RIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
            +  G +  G  ++A+ V   M   G   +  +   +IS
Sbjct: 379 ILAKGYVRAGETENAESVLTSMAKSGVRPNVVICTTIIS 417



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 144/320 (45%), Gaps = 2/320 (0%)

Query: 241 FKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
            K+  L+  + S + N R Y+ L+ A   +  +E+A  +L KM  +GI PD+VT  +L  
Sbjct: 183 LKMLHLMSLDGSVKPNDRTYNILVRAWCSKKNIEEAWNVLHKMVASGIQPDVVTYNILAR 242

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
            Y++ G   RA++    ++     P+++    ++  Y   G     +  V  M   G+  
Sbjct: 243 AYAQKGETLRAEDLILEMQYEKVAPNERTCGIIVNGYCKEGNMIEALRFVYRMKELGVHP 302

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
           +  I+ +L++ F    D  G  +   +M     +P + + + ++ A+  AG  D+ +  F
Sbjct: 303 NLVIFNSLIKGFLDITDTDGVDEALTLMEEYGVKPDVITFSTIMNAWSSAGLMDKCQEIF 362

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD-WLGR 479
           + M + G +PD    + +   Y +    + A ++L  + K G  P     T ++  W   
Sbjct: 363 NDMAKAGIEPDIHAFSILAKGYVRAGETENAESVLTSMAKSGVRPNVVICTTIISGWCSA 422

Query: 480 LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD 539
            ++ N A+ +  K+ E+G +P  K   +L   YA A    KA + L  +E K        
Sbjct: 423 GKMEN-AKMVYEKMCEIGISPNLKTFETLIWGYAEARQPGKAEELLQLMEEKGVFPEKST 481

Query: 540 FERIINGLLAGGFLQDAQRV 559
            + + +     G L +A+R+
Sbjct: 482 IQLVADAWRNIGLLCEAKRI 501



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 61/274 (22%), Positives = 127/274 (46%), Gaps = 4/274 (1%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVL--SEESFQTNVRDYSKLIDAHAKENCLED 275
           +QP  + + N+L R   Q  +   +  +L+L    E    N R    +++ + KE  + +
Sbjct: 230 IQPDVVTY-NILARAYAQKGET-LRAEDLILEMQYEKVAPNERTCGIIVNGYCKEGNMIE 287

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A R + +M E G+ P++V    L+  +    + D   EA   +  +G +PD   +++++ 
Sbjct: 288 ALRFVYRMKELGVHPNLVIFNSLIKGFLDITDTDGVDEALTLMEEYGVKPDVITFSTIMN 347

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
           A+ +AG       + + M  +GIE     +  L + + + G+   A  +   M     +P
Sbjct: 348 AWSSAGLMDKCQEIFNDMAKAGIEPDIHAFSILAKGYVRAGETENAESVLTSMAKSGVRP 407

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
            +  CT ++  +  AG  + A+  ++ M  +G  P+ +   ++I  Y +     KA  LL
Sbjct: 408 NVVICTTIISGWCSAGKMENAKMVYEKMCEIGISPNLKTFETLIWGYAEARQPGKAEELL 467

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
             +E+ G  P  +T  ++ D    + L+ EA+++
Sbjct: 468 QLMEEKGVFPEKSTIQLVADAWRNIGLLCEAKRI 501



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 70/324 (21%), Positives = 141/324 (43%), Gaps = 2/324 (0%)

Query: 246 LVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKA 305
           + L + S +T V   +KL++    +    +A  I   + E+G  P ++T T LV   +K 
Sbjct: 48  VCLGKNSCRT-VHSRTKLMNILIGKGKPHEANLIFDNLVEDGHRPTLITYTTLVAALTKL 106

Query: 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
            + +        +  +G +PD  +YN+MI A+  +G  K  M +   M  +G + +   +
Sbjct: 107 KHFESIFLLISKVEENGMKPDSILYNAMINAFSESGNVKEAMKIFQKMKDTGCKPTTSTF 166

Query: 366 LALLRSFAQCGDVRGAGQITNIMRIE-EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
             L++ +   G      ++ ++M ++   +P   +  +LV A+    + ++A +    M+
Sbjct: 167 NTLIKGYGNAGKPEEGLKMLHLMSLDGSVKPNDRTYNILVRAWCSKKNIEEAWNVLHKMV 226

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
             G +PD      +  AY +K    +A +L+LE++ +   P   T  ++V+   +   + 
Sbjct: 227 ASGIQPDVVTYNILARAYAQKGETLRAEDLILEMQYEKVAPNERTCGIIVNGYCKEGNMI 286

Query: 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERII 544
           EA + + ++ ELG  P   I  SL   +          +AL  +E    +     F  I+
Sbjct: 287 EALRFVYRMKELGVHPNLVIFNSLIKGFLDITDTDGVDEALTLMEEYGVKPDVITFSTIM 346

Query: 545 NGLLAGGFLQDAQRVHGLMEAQGF 568
           N   + G +   Q +   M   G 
Sbjct: 347 NAWSSAGLMDKCQEIFNDMAKAGI 370


>gi|147833287|emb|CAN77475.1| hypothetical protein VITISV_041111 [Vitis vinifera]
          Length = 1010

 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/361 (22%), Positives = 150/361 (41%), Gaps = 51/361 (14%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
            + F  +   YSK+I      + +++A  + ++M  N +VPD+ T T+L+  + K G L 
Sbjct: 473 SKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQ 532

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
           +A++ F+ +   G  P+   Y ++I AY+ A +      L +MM++ G   +   Y AL+
Sbjct: 533 QARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALI 592

Query: 370 RSFAQCGDVRGAGQIT-------------------------------------------- 385
               + G +  A QI                                             
Sbjct: 593 DGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKV 652

Query: 386 -------NIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
                  ++M +E  +P       L++ + + G  D+A+  F  M   G+ P+    +S+
Sbjct: 653 KEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSL 712

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           I    K   LD AL +L  + ++   P    YT ++D L ++   +EA +L+  + E G 
Sbjct: 713 IDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGC 772

Query: 499 APPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQR 558
            P      ++ D + +AG   K L+ +  + AK        +  +IN   A G L DA +
Sbjct: 773 HPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQ 832

Query: 559 V 559
           +
Sbjct: 833 L 833



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 134/321 (41%), Gaps = 51/321 (15%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ LID+  K   L+ A +   +M  +G  P++VT T L+H Y KA  +  A E F
Sbjct: 514 DVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELF 573

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL------------VDMM--ITSGIERS 361
           E + S G  P+   Y ++I  +  +GQ +    +            VDM   I  G  R 
Sbjct: 574 EMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRD 633

Query: 362 EEI--YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
             I  Y AL+    +   V+ A  + ++M +E  +P       L++ + + G  D+A+  
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMV 693

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL---LE------------------- 457
           F  M   G+ P+    +S+I    K   LD AL +L   LE                   
Sbjct: 694 FTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCK 753

Query: 458 -------------LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKI 504
                        +E+ G  P   TYT ++D  G+   +++  +L+ ++   G AP F  
Sbjct: 754 VGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVT 813

Query: 505 QVSLCDMYARAGIEKKALQAL 525
              L +    AG+   A Q L
Sbjct: 814 YRVLINHCCAAGLLDDAHQLL 834



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 80/353 (22%), Positives = 151/353 (42%), Gaps = 31/353 (8%)

Query: 258 RDYSKLIDAHAKEN---------CL------EDAERILKKMNENGIVPDIVTSTVLVHMY 302
           + Y +++DAH   N         CL      E A  I+++M   G +PD  T + ++ + 
Sbjct: 431 KAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLL 490

Query: 303 SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE 362
             A  +D A   FE ++S+   PD   Y  +I ++   G  +      D M+  G   + 
Sbjct: 491 CNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNV 550

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA------ 416
             Y AL+ ++ +   +  A ++  +M  E   P + + T L++ + ++G  ++A      
Sbjct: 551 VTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYAR 610

Query: 417 -RSNFD-------YMIRLGH--KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG 466
            R N D       + I  G+   P+     +++    K + + +A +LL  +  +G EP 
Sbjct: 611 MRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPN 670

Query: 467 PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALG 526
              Y  L+D   ++  ++EA+ +  K+SE G  P      SL D   +      AL+ L 
Sbjct: 671 HIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLS 730

Query: 527 FLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
            +           +  +I+GL   G   +A R+  +ME +G   +     A+I
Sbjct: 731 RMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMI 783



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 70/343 (20%), Positives = 139/343 (40%), Gaps = 38/343 (11%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++ +E F+ +   Y+++I    + +  E+A   L +M  +  +P++VT  +L+    +  
Sbjct: 289 LIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKR 348

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            L R K     + + G  P ++++NS+I AY  +G       L+  M   G +    +Y 
Sbjct: 349 QLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYN 408

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ----------------- 409
            L+     CG+              E  P+L+   L  +AYG+                 
Sbjct: 409 ILIGGI--CGN--------------EKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLA 452

Query: 410 -----AGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
                AG  ++A S    M+  G  PD    + +I      + +D A  L  E++ +   
Sbjct: 453 RCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVV 512

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQA 524
           P   TYT+L+D   ++ L+ +A +   ++   G AP      +L   Y +A     A + 
Sbjct: 513 PDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANEL 572

Query: 525 LGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
              + ++        +  +I+G    G ++ A +++  M    
Sbjct: 573 FEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNA 615



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 118/284 (41%), Gaps = 18/284 (6%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           LE AE+   +M +  +V + V  + L      AG  ++A      + S GF PD   Y+ 
Sbjct: 426 LELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSK 485

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I    NA +      L + M ++ +      Y  L+ SF + G ++ A +  + M  + 
Sbjct: 486 VIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDG 545

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P + + T L+ AY +A     A   F+ M+  G  P+     ++I  + K   ++KA 
Sbjct: 546 CAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKAC 605

Query: 453 NLLLELE--------------KDGF--EPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
            +   +                DG   +P   TY  LVD L +   + EA  LL  +S  
Sbjct: 606 QIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVE 665

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF 540
           G  P   +  +L D + + G   +A   + F +  +   GP+ +
Sbjct: 666 GCEPNHIVYDALIDGFCKVGKLDEA--QMVFTKMSERGYGPNVY 707



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 105/256 (41%), Gaps = 5/256 (1%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           V+S E  + N   Y  LID   K   L++A+ +  KM+E G  P++ T + L+    K  
Sbjct: 661 VMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDK 720

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            LD A +    +  +   P+  +Y  MI      G+      L+ MM   G   +   Y 
Sbjct: 721 RLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYT 780

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           A++  F + G V    ++   M  +   P   +  +L+     AG  D A    D M + 
Sbjct: 781 AMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQT 840

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL---GRLQLI 483
                      +I  + ++ ++  +L LL E+ ++   P    Y +L+D     GRL+L 
Sbjct: 841 YWPKHMAGYRKVIEGFNREFII--SLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELA 898

Query: 484 NEAEQLLGKISELGEA 499
            E  + +   +    A
Sbjct: 899 LELHKXMSSCTSYSAA 914



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 77/372 (20%), Positives = 139/372 (37%), Gaps = 58/372 (15%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+    + + L+ A  + ++M+++G   D  T    VH+  KAG   R +EA   + 
Sbjct: 235 YNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAG---RWREALALIE 291

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
              F+ D  +Y  MI     A   +  M  +  M +S    +   Y  LL     CG +R
Sbjct: 292 KEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILL-----CGCLR 346

Query: 380 G-----AGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
                   +I ++M  E   P+      L+ AY ++GD   A      M   G +P    
Sbjct: 347 KRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVV 406

Query: 435 TASMIA-------------------AYGK-------------KNL---------LDKALN 453
              +I                    AYG+              NL          +KA +
Sbjct: 407 YNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYS 466

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
           ++ E+   GF P  +TY+ ++  L     ++ A  L  ++      P       L D + 
Sbjct: 467 IIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFC 526

Query: 514 RAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAAS 571
           + G+ ++A +   F E  ++   P+   +  +I+  L    +  A  +  +M ++G   +
Sbjct: 527 KVGLLQQARK--WFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPN 584

Query: 572 ERLKVALISSQT 583
                ALI    
Sbjct: 585 VVTYTALIDGHC 596



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 47/233 (20%), Positives = 87/233 (37%), Gaps = 12/233 (5%)

Query: 251 ESFQTNVRD-----YSKLIDAHAKENCLEDAERI----LKKMNENGIVPDIVTSTVLVHM 301
           E F   +RD       KL++   ++ C      +    L ++ + G  P  +T   LV +
Sbjct: 182 EQFLREIRDEDKEILGKLLNVLIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRV 241

Query: 302 YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS 361
           + +A  LD A      +   GF  D       +     AG+ +  ++L++       +  
Sbjct: 242 FLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREALALIE---KEEFKLD 298

Query: 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421
             IY  ++    +      A    + MR     P + +  +L+    +     + +    
Sbjct: 299 TVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILS 358

Query: 422 YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
            MI  G  P  R   S+I AY +      A  LL ++   G +PG   Y +L+
Sbjct: 359 MMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILI 411


>gi|168045490|ref|XP_001775210.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673423|gb|EDQ59946.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 404

 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 132/297 (44%), Gaps = 17/297 (5%)

Query: 233 REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKM---NENGIV 289
           R  N  L F+  E++L  E  Q +   Y+ L++A+ K    E+A  +   M   NE    
Sbjct: 61  RVHNATLLFQ--EMLL--EKCQADQYTYTALVNAYGKAKMFEEALAVFSHMKESNEPNCQ 116

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRS------HGFQPDKKVYNSMIMAYVNAGQP 343
           P+ VT   L+    K G  D+A + F  +R       HG +P+   YN +I A    G  
Sbjct: 117 PNTVTCNALIDALVKGGLYDQAIQVFFDMRDGTNGLEHGCEPNVITYNVLIDALCKEGLL 176

Query: 344 KLGMSLVDMMITSGIERSEE----IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLES 399
            +GM ++  M     ++S +     Y  L+ +  + G    A ++ ++M     QP   +
Sbjct: 177 DIGMKVLQYMRDGNTDQSVQPNSATYNTLINACGKGGLYEKAEELVDLMVEHGVQPDHIT 236

Query: 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELE 459
            T L++AYG+AG  + A + F  M       D     +MI AYG++ L  KA  +   ++
Sbjct: 237 YTALIDAYGKAGLWENAENTFKGMKGTNVSVDVMAYTAMIDAYGREGLYQKAEEMFKMMQ 296

Query: 460 KDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
             G  P   TY  L++  G+  L  E+  +   + E G      I  SL D Y +AG
Sbjct: 297 HSGLRPNQVTYLSLMEAYGKAGLPEESRNVFNIMRESGYEGNVLIYSSLIDAYGKAG 353



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 141/289 (48%), Gaps = 10/289 (3%)

Query: 219 QPSRIDWINLLDRL-----REQNTQLYFKVAELVLS-EESFQTNVRDYSKLIDAHAKENC 272
           QP+ +    L+D L      +Q  Q++F + +     E   + NV  Y+ LIDA  KE  
Sbjct: 116 QPNTVTCNALIDALVKGGLYDQAIQVFFDMRDGTNGLEHGCEPNVITYNVLIDALCKEGL 175

Query: 273 LEDAERILKKM----NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKK 328
           L+   ++L+ M     +  + P+  T   L++   K G  ++A+E  + +  HG QPD  
Sbjct: 176 LDIGMKVLQYMRDGNTDQSVQPNSATYNTLINACGKGGLYEKAEELVDLMVEHGVQPDHI 235

Query: 329 VYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIM 388
            Y ++I AY  AG  +   +    M  + +      Y A++ ++ + G  + A ++  +M
Sbjct: 236 TYTALIDAYGKAGLWENAENTFKGMKGTNVSVDVMAYTAMIDAYGREGLYQKAEEMFKMM 295

Query: 389 RIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLL 448
           +    +P   +   L+EAYG+AG P+++R+ F+ M   G++ +    +S+I AYGK    
Sbjct: 296 QHSGLRPNQVTYLSLMEAYGKAGLPEESRNVFNIMRESGYEGNVLIYSSLIDAYGKAGNY 355

Query: 449 DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
            +A  +L  + + G +P   TY+ ++    +     EA+ LL ++   G
Sbjct: 356 LEAARMLDMMRRAGCQPNLITYSAILSSCCKSNCWVEAQVLLRRLQVFG 404


>gi|414887392|tpg|DAA63406.1| TPA: hypothetical protein ZEAMMB73_124662 [Zea mays]
          Length = 795

 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 141/324 (43%), Gaps = 11/324 (3%)

Query: 264 IDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGF 323
           I   A+  CL +A  IL    E    PD    T LV  +S+AG    A   F+ +   G 
Sbjct: 160 IRVFARAGCLAEASAIL----EAAPAPDASAYTALVSAFSRAGRFRDAVAVFQRMVDGGV 215

Query: 324 QPDKKVYNSMIMAYVNAGQP-KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAG 382
           QP    YN +  AY     P K  ++LVD M   GIER    Y  L+    + G  R A 
Sbjct: 216 QPALVTYNVVFHAYSKMSVPWKEVVALVDSMKEDGIERDRYTYNTLISCCRRRGLHREAA 275

Query: 383 QITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAY 442
           Q+ + M+   F+P   +   L++ YG+A   ++A      M   G  P      S+I+AY
Sbjct: 276 QVFDEMKAAGFEPDKVTFNSLLDVYGKARKHEEAIGVLKRMENAGCTPSVVTYNSLISAY 335

Query: 443 GKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPF 502
            K  LL++AL L  E+E  G +P   TYT L+  L R+  I+ A     ++   G +P  
Sbjct: 336 VKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRVGKIDAALATYSEMVRNGCSPNL 395

Query: 503 KIQVSLCDMYARAGIEKKALQALG-FLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRV 559
               +L  ++   G+  K  + +  F + +     PD   +  +++     G   +   V
Sbjct: 396 CTYNALIKLH---GVRGKFTEMMAVFDDLRSAGYVPDVVTWNTLLSVFGQNGLDSEVSGV 452

Query: 560 HGLMEAQGFAASERLKVALISSQT 583
              M+  G+       V+LISS +
Sbjct: 453 FKEMKKAGYIPERDTYVSLISSYS 476



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/342 (21%), Positives = 148/342 (43%), Gaps = 40/342 (11%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG------------- 306
           Y+ L+ A ++     DA  + ++M + G+ P +VT  V+ H YSK               
Sbjct: 187 YTALVSAFSRAGRFRDAVAVFQRMVDGGVQPALVTYNVVFHAYSKMSVPWKEVVALVDSM 246

Query: 307 ----------------------NLDR-AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343
                                  L R A + F+ +++ GF+PDK  +NS++  Y  A + 
Sbjct: 247 KEDGIERDRYTYNTLISCCRRRGLHREAAQVFDEMKAAGFEPDKVTFNSLLDVYGKARKH 306

Query: 344 KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403
           +  + ++  M  +G   S   Y +L+ ++ + G +  A ++   M     +P + + T L
Sbjct: 307 EEAIGVLKRMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTL 366

Query: 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGF 463
           +    + G  D A + +  M+R G  P+     ++I  +G +    + + +  +L   G+
Sbjct: 367 ISGLDRVGKIDAALATYSEMVRNGCSPNLCTYNALIKLHGVRGKFTEMMAVFDDLRSAGY 426

Query: 464 EPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
            P   T+  L+   G+  L +E   +  ++ + G  P     VSL   Y+R G+  +A++
Sbjct: 427 VPDVVTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAME 486

Query: 524 ALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLM 563
              +    +  + PD   +  +++ L  GG  + A+++   M
Sbjct: 487 I--YKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEM 526



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 117/263 (44%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F+ +   ++ L+D + K    E+A  +LK+M   G  P +VT   L+  Y K G L+ A 
Sbjct: 286 FEPDKVTFNSLLDVYGKARKHEEAIGVLKRMENAGCTPSVVTYNSLISAYVKDGLLEEAL 345

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           E  + +   G +PD   Y ++I      G+    ++    M+ +G   +   Y AL++  
Sbjct: 346 ELKQEMEFRGMKPDVVTYTTLISGLDRVGKIDAALATYSEMVRNGCSPNLCTYNALIKLH 405

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
              G       + + +R   + P + +   L+  +GQ G   +    F  M + G+ P+ 
Sbjct: 406 GVRGKFTEMMAVFDDLRSAGYVPDVVTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYIPER 465

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               S+I++Y +  L D+A+ +   + + G  P  +TY  ++  L R     +AE+L  +
Sbjct: 466 DTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAE 525

Query: 493 ISELGEAPPFKIQVSLCDMYARA 515
           + +    P      SL   YA A
Sbjct: 526 MVDRDCKPDELSYSSLLHAYANA 548



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 131/301 (43%), Gaps = 3/301 (0%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELV--LSEESFQTNVRDYSKLIDAHAKENCLED 275
           +QP+ + + N++     + +  + +V  LV  + E+  + +   Y+ LI    +     +
Sbjct: 215 VQPALVTY-NVVFHAYSKMSVPWKEVVALVDSMKEDGIERDRYTYNTLISCCRRRGLHRE 273

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A ++  +M   G  PD VT   L+ +Y KA   + A    + + + G  P    YNS+I 
Sbjct: 274 AAQVFDEMKAAGFEPDKVTFNSLLDVYGKARKHEEAIGVLKRMENAGCTPSVVTYNSLIS 333

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
           AYV  G  +  + L   M   G++     Y  L+    + G +  A    + M      P
Sbjct: 334 AYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRVGKIDAALATYSEMVRNGCSP 393

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
            L +   L++ +G  G   +  + FD +   G+ PD     ++++ +G+  L  +   + 
Sbjct: 394 NLCTYNALIKLHGVRGKFTEMMAVFDDLRSAGYVPDVVTWNTLLSVFGQNGLDSEVSGVF 453

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
            E++K G+ P   TY  L+    R  L ++A ++  ++ E G  P      ++    AR 
Sbjct: 454 KEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARG 513

Query: 516 G 516
           G
Sbjct: 514 G 514



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 85/396 (21%), Positives = 161/396 (40%), Gaps = 45/396 (11%)

Query: 218 LQPSRIDWINL---LDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           ++P  + +  L   LDR+ + +  L    +E+V        N+  Y+ LI  H       
Sbjct: 356 MKPDVVTYTTLISGLDRVGKIDAAL-ATYSEMV--RNGCSPNLCTYNALIKLHGVRGKFT 412

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           +   +   +   G VPD+VT   L+ ++ + G        F+ ++  G+ P++  Y S+I
Sbjct: 413 EMMAVFDDLRSAGYVPDVVTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLI 472

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
            +Y   G     M +   MI +GI      Y A+L + A+ G    A ++   M   + +
Sbjct: 473 SSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMVDRDCK 532

Query: 395 PTLESCTLLVEAYGQAGDPDQARS-----------NFDYMIR----LGHKPDD------- 432
           P   S + L+ AY  A   D+ ++             +++++    + +K ++       
Sbjct: 533 PDELSYSSLLHAYANAKKLDKMKTLSEDIYAERIERHNWLVKTLVLVNNKVNNLPETEKA 592

Query: 433 -------RCT------ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
                  RC+       +M++ YGK  ++ K   +L  + ++      ATY  L+    R
Sbjct: 593 FQELRRRRCSLDINVLNAMVSIYGKNKMVKKVEEVLSLMMENSINHSAATYNSLMHMYSR 652

Query: 480 LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD- 538
           L    + E +L +I   G  P      ++   Y R G  K+A +   F E K   + PD 
Sbjct: 653 LGDCEKCESILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRL--FSEMKCSGVKPDI 710

Query: 539 -DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASER 573
             +   I   +A    ++A  +   +  QG   +ER
Sbjct: 711 VTYNIFIKSYVANIMFEEAIDLVRYLVTQGCRPNER 746



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 84/384 (21%), Positives = 144/384 (37%), Gaps = 74/384 (19%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA---- 311
           +V  Y+ LI A+ K+  LE+A  + ++M   G+ PD+VT T L+    + G +D A    
Sbjct: 324 SVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRVGKIDAALATY 383

Query: 312 -------------------------------KEAFESLRSHGFQPDKKVYNSMIMAYVNA 340
                                             F+ LRS G+ PD   +N+++  +   
Sbjct: 384 SEMVRNGCSPNLCTYNALIKLHGVRGKFTEMMAVFDDLRSAGYVPDVVTWNTLLSVFGQN 443

Query: 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
           G       +   M  +G     + Y++L+ S+++CG    A +I   M      P + + 
Sbjct: 444 GLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTY 503

Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL------ 454
             ++ A  + G  +QA   F  M+    KPD+   +S++ AY     LDK   L      
Sbjct: 504 NAVLSALARGGRWEQAEKLFAEMVDRDCKPDELSYSSLLHAYANAKKLDKMKTLSEDIYA 563

Query: 455 -----------LLELEKDGFEPGPAT------------------YTVLVDWLGRLQLINE 485
                       L L  +     P T                     +V   G+ +++ +
Sbjct: 564 ERIERHNWLVKTLVLVNNKVNNLPETEKAFQELRRRRCSLDINVLNAMVSIYGKNKMVKK 623

Query: 486 AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERI 543
            E++L  + E           SL  MY+R G  +K    L   E K   M PD   +  +
Sbjct: 624 VEEVLSLMMENSINHSAATYNSLMHMYSRLGDCEKCESIL--TEIKSSGMRPDRYSYNTV 681

Query: 544 INGLLAGGFLQDAQRVHGLMEAQG 567
           I      G +++A R+   M+  G
Sbjct: 682 IYAYGRKGQMKEASRLFSEMKCSG 705



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/304 (21%), Positives = 125/304 (41%), Gaps = 38/304 (12%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  LI ++++    + A  I K+M E GI PDI T   ++   ++ G  ++A++ F  + 
Sbjct: 468 YVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMV 527

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE----------------- 362
               +PD+  Y+S++ AY NA +     +L + +    IER                   
Sbjct: 528 DRDCKPDELSYSSLLHAYANAKKLDKMKTLSEDIYAERIERHNWLVKTLVLVNNKVNNLP 587

Query: 363 ------------------EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
                              +  A++  + +   V+   ++ ++M       +  +   L+
Sbjct: 588 ETEKAFQELRRRRCSLDINVLNAMVSIYGKNKMVKKVEEVLSLMMENSINHSAATYNSLM 647

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
             Y + GD ++  S    +   G +PD     ++I AYG+K  + +A  L  E++  G +
Sbjct: 648 HMYSRLGDCEKCESILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVK 707

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQA 524
           P   TY + +       +  EA  L+  +   G  P  +   S+   Y+R G   + ++A
Sbjct: 708 PDIVTYNIFIKSYVANIMFEEAIDLVRYLVTQGCRPNERTFNSILQGYSRHG---RMVEA 764

Query: 525 LGFL 528
             FL
Sbjct: 765 KSFL 768



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 66/317 (20%), Positives = 127/317 (40%), Gaps = 45/317 (14%)

Query: 220 PSRIDWINLLDR-----LREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           P R  +++L+       L +Q  ++Y +     + E     ++  Y+ ++ A A+    E
Sbjct: 463 PERDTYVSLISSYSRCGLFDQAMEIYKR-----MIEAGIYPDISTYNAVLSALARGGRWE 517

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK---------------------- 312
            AE++  +M +    PD ++ + L+H Y+ A  LD+ K                      
Sbjct: 518 QAEKLFAEMVDRDCKPDELSYSSLLHAYANAKKLDKMKTLSEDIYAERIERHNWLVKTLV 577

Query: 313 -------------EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
                        +AF+ LR      D  V N+M+  Y      K    ++ +M+ + I 
Sbjct: 578 LVNNKVNNLPETEKAFQELRRRRCSLDINVLNAMVSIYGKNKMVKKVEEVLSLMMENSIN 637

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
            S   Y +L+  +++ GD      I   ++    +P   S   ++ AYG+ G   +A   
Sbjct: 638 HSAATYNSLMHMYSRLGDCEKCESILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRL 697

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
           F  M   G KPD       I +Y    + ++A++L+  L   G  P   T+  ++    R
Sbjct: 698 FSEMKCSGVKPDIVTYNIFIKSYVANIMFEEAIDLVRYLVTQGCRPNERTFNSILQGYSR 757

Query: 480 LQLINEAEQLLGKISEL 496
              + EA+  L  + ++
Sbjct: 758 HGRMVEAKSFLSNLPKI 774


>gi|115475535|ref|NP_001061364.1| Os08g0248400 [Oryza sativa Japonica Group]
 gi|113623333|dbj|BAF23278.1| Os08g0248400, partial [Oryza sativa Japonica Group]
          Length = 440

 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 111/231 (48%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  YS +ID   KE   + A     +M E GI+PD+VT   +V    KA  +D+A +  
Sbjct: 205 DVVSYSTIIDGLFKEGDSDKAYSTYHEMLERGILPDVVTYNTIVAALCKAQAMDKAMDVL 264

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +  +G  PD   YNS++  Y ++GQ K  + +++ M + G+E     Y +L+    + 
Sbjct: 265 NRMVKNGVMPDCITYNSIVHGYCSSGQSKEAIGILEKMCSDGVEPDAVTYTSLMDYLCKN 324

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G    A +I + M     +P + + + L+  Y   G   + R   D M+R G +PD    
Sbjct: 325 GRCIEARKILDSMIKRGLKPNVITYSTLLHGYATKGALVEMRDLLDLMVRNGIQPDRHVF 384

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           + +I A  K   +D A+ +  ++ +    P   TY  L+D L +   +++A
Sbjct: 385 SILICACTKHQNVDVAMFVFSKMRQQRLTPDVVTYGTLIDGLCKSGRVDDA 435



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 79/162 (48%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ ++  +      ++A  IL+KM  +G+ PD VT T L+    K G    A++  +S+ 
Sbjct: 279 YNSIVHGYCSSGQSKEAIGILEKMCSDGVEPDAVTYTSLMDYLCKNGRCIEARKILDSMI 338

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +P+   Y++++  Y   G       L+D+M+ +GI+    ++  L+ +  +  +V 
Sbjct: 339 KRGLKPNVITYSTLLHGYATKGALVEMRDLLDLMVRNGIQPDRHVFSILICACTKHQNVD 398

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421
            A  + + MR +   P + +   L++   ++G  D A  N +
Sbjct: 399 VAMFVFSKMRQQRLTPDVVTYGTLIDGLCKSGRVDDAMLNLE 440



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 88/210 (41%), Gaps = 10/210 (4%)

Query: 325 PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQI 384
           P    Y  +I     AG+  LG + +  +I  G      I+  LL+S   C + R +  +
Sbjct: 96  PTLHTYGILIGCCCRAGRLDLGFAGLGNVIKKGYRVEPIIFTPLLKSL--CAEKRTSNAM 153

Query: 385 TNIMR-IEEF--QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG--HKPDDRCTASMI 439
             ++R + E    P + S  +L++         +A      M   G    PD    +++I
Sbjct: 154 NIVLRRMTELGCAPHVFSYNILLKGLCHESRSQEALELLHMMADDGGDCPPDVVSYSTII 213

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
               K+   DKA +   E+ + G  P   TY  +V  L + Q +++A  +L ++ + G  
Sbjct: 214 DGLFKEGDSDKAYSTYHEMLERGILPDVVTYNTIVAALCKAQAMDKAMDVLNRMVKNGVM 273

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLE 529
           P      S+   Y  +G  K   +A+G LE
Sbjct: 274 PDCITYNSIVHGYCSSGQSK---EAIGILE 300


>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
          Length = 791

 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 123/266 (46%), Gaps = 6/266 (2%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ +I+   KE   + A     +M + GI+PD+VT   ++    KA  +D+A E  
Sbjct: 195 DVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVL 254

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
            ++  +G  PD   YNS++  Y ++GQPK  +  +  M + G+E     Y  L+    + 
Sbjct: 255 NTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKN 314

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G    A +I + M     +P + +   L++ Y   G   +     D M+R G  PD    
Sbjct: 315 GRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVF 374

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
           + +I AY  +  +D+A+ +  ++ + G  P   TY  ++  L +   + +A     ++ +
Sbjct: 375 SILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMID 434

Query: 496 LGEAPPFKIQVSL------CDMYARA 515
            G +P   +  SL      C+ + RA
Sbjct: 435 EGLSPGNIVYNSLIHGLCTCNKWERA 460



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 140/310 (45%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ ++  +      ++A   LKKM  +G+ PD+VT ++L+    K G    A++ F+S+ 
Sbjct: 269 YNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMT 328

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +P+   Y +++  Y   G       L+D+M+ +GI     ++  L+ ++A  G V 
Sbjct: 329 KRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVD 388

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  + + MR +   P   +   ++    ++G  + A   F+ MI  G  P +    S+I
Sbjct: 389 QAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLI 448

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
                 N  ++A  L+LE+   G       +  ++D   +   + E+E+L   +  +G  
Sbjct: 449 HGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVK 508

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P      +L + Y  AG   +A++ L  + +   +     +  +ING      ++DA  +
Sbjct: 509 PNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVL 568

Query: 560 HGLMEAQGFA 569
              ME+ G +
Sbjct: 569 FKEMESSGVS 578



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 116/238 (48%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           +S LI A+A +  ++ A  +  KM + G+ P+ VT   ++ +  K+G ++ A   FE + 
Sbjct: 374 FSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMI 433

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P   VYNS+I       + +    L+  M+  GI  +   + +++ S  + G V 
Sbjct: 434 DEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVI 493

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            + ++  +M     +P + +   L+  Y  AG  D+A      M+ +G KP+    +++I
Sbjct: 494 ESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLI 553

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
             Y K + ++ AL L  E+E  G  P   TY +++  L + +    A++L  +I+E G
Sbjct: 554 NGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESG 611



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 138/297 (46%), Gaps = 7/297 (2%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNEN---GIVPDIVTSTVLVHMYSKAGNLDRAK 312
           NV  Y+ L+     EN  ++A  +L  M ++   G  PD+V+ T +++ + K G+ D+A 
Sbjct: 157 NVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAY 216

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
             +  +   G  PD   YNS+I A   A      M +++ M+ +G+      Y ++L  +
Sbjct: 217 STYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGY 276

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
              G  + A      MR +  +P + + +LL++   + G   +AR  FD M + G KP+ 
Sbjct: 277 CSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEI 336

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               +++  Y  K  L +   LL  + ++G  P    +++L+        +++A  +  K
Sbjct: 337 TTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSK 396

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGL 547
           + + G  P      ++  +  ++G  + A+  L F +   E + P +  +  +I+GL
Sbjct: 397 MRQQGLNPNAVTYGAVIGILCKSGRVEDAM--LYFEQMIDEGLSPGNIVYNSLIHGL 451



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/285 (20%), Positives = 130/285 (45%), Gaps = 4/285 (1%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           ++P  + +  L+D L +    +  +     +++   +  +  Y  L+  +A +  L +  
Sbjct: 297 VEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMH 356

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
            +L  M  NGI PD    ++L+  Y+  G +D+A   F  +R  G  P+   Y ++I   
Sbjct: 357 GLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGIL 416

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
             +G+ +  M   + MI  G+     +Y +L+     C     A ++  I+ + +    L
Sbjct: 417 CKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEEL--ILEMLDRGICL 474

Query: 398 ESCTL--LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
            +     +++++ + G   ++   F+ M+R+G KP+     ++I  Y     +D+A+ LL
Sbjct: 475 NTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLL 534

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
             +   G +P   TY+ L++   ++  + +A  L  ++   G +P
Sbjct: 535 SGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSP 579



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 140/328 (42%), Gaps = 6/328 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ +I A  K   ++ A  +L  M +NG++PD +T   ++H Y  +G    A    
Sbjct: 230 DVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFL 289

Query: 316 ESLRSHGFQPDKKVYNSMIMAYV-NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
           + +RS G +PD   Y S++M Y+   G+      + D M   G++     Y  LL+ +A 
Sbjct: 290 KKMRSDGVEPDVVTY-SLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYAT 348

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
            G +     + ++M      P     ++L+ AY   G  DQA   F  M + G  P+   
Sbjct: 349 KGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVT 408

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
             ++I    K   ++ A+    ++  +G  PG   Y  L+  L        AE+L+ ++ 
Sbjct: 409 YGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEML 468

Query: 495 ELGEAPPFKIQVSLCDMYARAG--IEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
           + G         S+ D + + G  IE + L  L      K  +    +  +ING    G 
Sbjct: 469 DRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNV--ITYNTLINGYCLAGK 526

Query: 553 LQDAQRVHGLMEAQGFAASERLKVALIS 580
           + +A ++   M + G   +      LI+
Sbjct: 527 MDEAMKLLSGMVSVGLKPNTVTYSTLIN 554



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 125/279 (44%), Gaps = 8/279 (2%)

Query: 216 ELLQPSRIDWINLLDRLREQNTQLYFKVAELVLS--EESFQTNVRDYSKLIDAHAKENCL 273
           E L P  I + +L+  L   N   + +  EL+L   +     N   ++ +ID+H KE  +
Sbjct: 435 EGLSPGNIVYNSLIHGLCTCNK--WERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRV 492

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
            ++E++ + M   G+ P+++T   L++ Y  AG +D A +    + S G +P+   Y+++
Sbjct: 493 IESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTL 552

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           I  Y    + +  + L   M +SG+      Y  +L+   Q      A ++   +RI E 
Sbjct: 553 INGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKEL--YVRITES 610

Query: 394 QPTLESCTLLVEAYGQAGD--PDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
              +E  T  +  +G   +   D A   F  +  +  K + R    MI A  K    D+A
Sbjct: 611 GTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEA 670

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
            +L +    +G  P   TY ++ + +    L+ E +QL 
Sbjct: 671 KDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLF 709



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 74/324 (22%), Positives = 124/324 (38%), Gaps = 47/324 (14%)

Query: 288 IVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGM 347
           + PD+ T  +L+    +AG LD    A  ++   GF+ D   +  ++       +    M
Sbjct: 83  VTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAM 142

Query: 348 SLVDMMITS-GIERSEEIYLALLRSFAQCGDVRGAGQITNIM---RIEEFQPTLESCTLL 403
            +V   +T  G   +   Y  LL+        + A ++ ++M   R     P + S T +
Sbjct: 143 DIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTV 202

Query: 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK--- 460
           +  + + GD D+A S +  M+  G  PD     S+IAA  K   +DKA+ +L  + K   
Sbjct: 203 INGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGV 262

Query: 461 --------------------------------DGFEPGPATYTVLVDWLGRLQLINEAEQ 488
                                           DG EP   TY++L+D+L +     EA +
Sbjct: 263 MPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARK 322

Query: 489 LLGKISELGEAPPFKIQVSLCDMYARAG--IEKKALQALGFLEAKKEQMGPDD--FERII 544
           +   +++ G  P      +L   YA  G  +E   L  L      +  + PD   F  +I
Sbjct: 323 IFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDL----MVRNGIHPDHYVFSILI 378

Query: 545 NGLLAGGFLQDAQRVHGLMEAQGF 568
                 G +  A  V   M  QG 
Sbjct: 379 CAYANQGKVDQAMLVFSKMRQQGL 402



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/240 (21%), Positives = 96/240 (40%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ LI+ +     +++A ++L  M   G+ P+ VT + L++ Y K   ++ A   F
Sbjct: 510 NVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLF 569

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + + S G  PD   YN ++       +      L   +  SG +     Y  +L    + 
Sbjct: 570 KEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKN 629

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
                A Q+   + + + +    +  ++++A  + G  D+A+  F      G  P+    
Sbjct: 630 KLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTY 689

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             M      + LL++   L L +E +G          +V  L +   I  A   L  I E
Sbjct: 690 RLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDE 749


>gi|413948663|gb|AFW81312.1| hypothetical protein ZEAMMB73_082399 [Zea mays]
          Length = 798

 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 136/304 (44%), Gaps = 4/304 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  YS +ID   KE  ++ A  +  +M   G  PD+VT + L+    KA  +++A+   
Sbjct: 202 NVVSYSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGLCKAQAMNKAEAIL 261

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + +   G  P+ + YN MI  Y + GQ +  + L+  M  SG++     Y+ L++ + + 
Sbjct: 262 QHMFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQYYCKI 321

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G    A  + + M  +  +P      +L+  Y   G     R   D MIR G   + R  
Sbjct: 322 GRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAF 381

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +I AY K   +DKA+    E+ ++G  P   +Y+ ++  L ++  + +A     ++  
Sbjct: 382 NILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVYHFNQMVS 441

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF--ERIINGLLAGGFL 553
            G +P      SL       G E K ++ L F E     + PD      I++ L   G +
Sbjct: 442 EGLSPNIISFTSLIHGLCSIG-EWKKVEELAF-EMINRGIHPDAIFMNTIMDNLCKEGRV 499

Query: 554 QDAQ 557
            +AQ
Sbjct: 500 VEAQ 503



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 148/342 (43%), Gaps = 10/342 (2%)

Query: 220 PSRIDWINLLDRLREQNTQLYFKVAELVLS---EESFQTNVRDYSKLIDAHAKENCLEDA 276
           P  + + +L+D L +         AE +L    ++    N R Y+ +I  +     LE+A
Sbjct: 236 PDVVTYSSLIDGLCKAQAM---NKAEAILQHMFDKGVMPNTRTYNIMIRGYCSLGQLEEA 292

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
            R+LKKM+ +G+ PD+VT  +L+  Y K G    A+  F+S+   G +P+  +Y+ ++  
Sbjct: 293 VRLLKKMSGSGLQPDVVTYILLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHG 352

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           Y   G       L+D+MI  GI      +  L+ ++A+ G V  A      MR    +P 
Sbjct: 353 YATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPD 412

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           + S + ++    + G  + A  +F+ M+  G  P+     S+I          K   L  
Sbjct: 413 VVSYSTVIHILCKIGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAF 472

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
           E+   G  P       ++D L +   + EA+     +  +G  P      +L D Y   G
Sbjct: 473 EMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVG 532

Query: 517 IEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQDA 556
              ++++   F       + PD   +  ++NG    G ++DA
Sbjct: 533 KMDESIKQ--FDRMVSIGLRPDSWTYNALLNGYFKNGRVEDA 572



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 53/253 (20%), Positives = 109/253 (43%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +  E    N+  ++ LI         +  E +  +M   GI PD +    ++    K G 
Sbjct: 439 MVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGR 498

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A++ F+ +   G +P+   YN++I  Y   G+    +   D M++ G+      Y A
Sbjct: 499 VVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKMDESIKQFDRMVSIGLRPDSWTYNA 558

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           LL  + + G V  A  +   M  ++ +    +  +++    QAG    AR  +  M+  G
Sbjct: 559 LLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIILHGLFQAGRIVAARELYMKMVDRG 618

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            +       +++    + + +D+AL +  +L    FE    T+ ++++ L ++  I+EA+
Sbjct: 619 TQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVWTFNIVINALLKVGRIDEAK 678

Query: 488 QLLGKISELGEAP 500
            L   +   G  P
Sbjct: 679 SLFSAMVLRGPVP 691



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 80/188 (42%)

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
            P + S + +++ + + G+ D+A   FD MI  G  PD    +S+I    K   ++KA  
Sbjct: 200 SPNVVSYSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGLCKAQAMNKAEA 259

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
           +L  +   G  P   TY +++     L  + EA +LL K+S  G  P     + L   Y 
Sbjct: 260 ILQHMFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQYYC 319

Query: 514 RAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASER 573
           + G   +A      +  K ++     +  +++G    G L D + +  LM   G     R
Sbjct: 320 KIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHR 379

Query: 574 LKVALISS 581
               LI +
Sbjct: 380 AFNILICA 387


>gi|297830278|ref|XP_002883021.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328861|gb|EFH59280.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 504

 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/328 (21%), Positives = 145/328 (44%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F+ ++  ++ L+      N +EDA  +  ++   G  P++VT T L+H   K  +L+ A 
Sbjct: 148 FEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMGFRPNVVTYTTLIHCLCKNRHLNHAV 207

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           E F  +  +G +P+   YNS++      G+      L+  M+  GI+ +   + AL+ +F
Sbjct: 208 EIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAF 267

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + G +  A ++  +M      P + + T L+      G  D+AR  F  M   G+ P++
Sbjct: 268 VKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPNE 327

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               ++I  + K   ++    +  E+ + G      TYTVL+     +   + A+++  +
Sbjct: 328 VTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGYCLVGRPDVAQEVFNQ 387

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
           +      P  +    L D     G  +KAL    ++  ++  +    +  II G+   G 
Sbjct: 388 MGSRRAPPDIRTYNVLLDGLCYNGYVEKALMIFKYMRKREMDINIVTYTIIIQGMCKVGK 447

Query: 553 LQDAQRVHGLMEAQGFAASERLKVALIS 580
           ++DA  +   + ++G   +      +IS
Sbjct: 448 VEDAFDLFCSLFSKGMKPNVITYTTMIS 475



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 114/253 (45%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + +   Q NV  ++ LIDA  K   + +A+ + K M +  + PD+ T T L++     G 
Sbjct: 248 MMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCTYGR 307

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           LD A++ F  + S+G+ P++  Y ++I  +  + + + G  +   M   G+  +   Y  
Sbjct: 308 LDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTV 367

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L++ +   G    A ++ N M      P + +  +L++     G  ++A   F YM +  
Sbjct: 368 LIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVEKALMIFKYMRKRE 427

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
              +      +I    K   ++ A +L   L   G +P   TYT ++    R   I+EA+
Sbjct: 428 MDINIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGFIHEAD 487

Query: 488 QLLGKISELGEAP 500
            L  K+ E G  P
Sbjct: 488 ALFKKMKEDGFLP 500



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/289 (20%), Positives = 122/289 (42%)

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A   L KM + G  PD+VT T L+H +     ++ A   F+ +   GF+P+   Y ++I 
Sbjct: 136 ASCFLGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMGFRPNVVTYTTLIH 195

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
                      + + + M  +GI  +   Y +L+    + G    A  +   M     QP
Sbjct: 196 CLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQP 255

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
            + + T L++A+ + G   +A+  +  MI++   PD     ++I        LD+A  + 
Sbjct: 256 NVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCTYGRLDEARQMF 315

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
             +E +G+ P   TYT L+    + + + +  ++  ++S+ G          L   Y   
Sbjct: 316 YLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGYCLV 375

Query: 516 GIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLME 564
           G    A +    + +++       +  +++GL   G+++ A  +   M 
Sbjct: 376 GRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVEKALMIFKYMR 424



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/274 (21%), Positives = 115/274 (41%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + +   + NV  Y+ L+    +     DA  +L+ M + GI P+++T T L+  + K G 
Sbjct: 213 MGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFVKVGK 272

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  AKE ++ +      PD   Y ++I      G+      +  +M ++G   +E  Y  
Sbjct: 273 IMEAKELYKVMIQMSVYPDVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTT 332

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+  F +   V    +I   M  +       + T+L++ Y   G PD A+  F+ M    
Sbjct: 333 LIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRR 392

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD R    ++        ++KAL +   + K   +    TYT+++  + ++  + +A 
Sbjct: 393 APPDIRTYNVLLDGLCYNGYVEKALMIFKYMRKREMDINIVTYTIIIQGMCKVGKVEDAF 452

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKA 521
            L   +   G  P      ++   + R G   +A
Sbjct: 453 DLFCSLFSKGMKPNVITYTTMISGFCRRGFIHEA 486



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 109/251 (43%)

Query: 215 KELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           K  +QP+ I +  L+D   +    +  K    V+ + S   +V  Y+ LI+       L+
Sbjct: 250 KRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCTYGRLD 309

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           +A ++   M  NG  P+ VT T L+H + K+  ++   + F  +   G   +   Y  +I
Sbjct: 310 EARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLI 369

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
             Y   G+P +   + + M +         Y  LL      G V  A  I   MR  E  
Sbjct: 370 QGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVEKALMIFKYMRKREMD 429

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
             + + T++++   + G  + A   F  +   G KP+     +MI+ + ++  + +A  L
Sbjct: 430 INIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGFIHEADAL 489

Query: 455 LLELEKDGFEP 465
             ++++DGF P
Sbjct: 490 FKKMKEDGFLP 500



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/321 (19%), Positives = 126/321 (39%)

Query: 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318
           +Y K++          +A  +  +M  +  +P IV  T L+ + +K    D     FE +
Sbjct: 49  NYRKILRNGLHNLQFNEALDLFTRMVHSRPLPSIVDFTRLLSVIAKMKRFDVVISLFEQM 108

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
           +  G  P     N ++     + QP      +  M+  G E     + +LL  F     +
Sbjct: 109 QILGISPVLYTCNIVMNCVCRSSQPCRASCFLGKMMKLGFEPDLVTFTSLLHGFCHWNRI 168

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             A  + + +    F+P + + T L+    +    + A   F+ M   G +P+     S+
Sbjct: 169 EDALALFDQIVGMGFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSL 228

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           ++   +      A  LL ++ K G +P   T+T L+D   ++  I EA++L   + ++  
Sbjct: 229 VSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSV 288

Query: 499 APPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQR 558
            P      +L +     G   +A Q    +E+         +  +I+G      ++D  +
Sbjct: 289 YPDVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTK 348

Query: 559 VHGLMEAQGFAASERLKVALI 579
           +   M  +G  A+      LI
Sbjct: 349 IFYEMSQKGLVANTITYTVLI 369



 Score = 42.0 bits (97), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 18/74 (24%), Positives = 38/74 (51%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  Y+ +I    K   +EDA  +   +   G+ P+++T T ++  + + G +  A   F
Sbjct: 431 NIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGFIHEADALF 490

Query: 316 ESLRSHGFQPDKKV 329
           + ++  GF P++ V
Sbjct: 491 KKMKEDGFLPNESV 504


>gi|410109955|gb|AFV61057.1| pentatricopeptide repeat-containing protein 11, partial [Phyla
           nodiflora]
          Length = 431

 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 123/261 (47%), Gaps = 6/261 (2%)

Query: 218 LQPSRIDWINLLD---RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           L+PS + +  L++   RL + +     K A   +       +V  YS LI+   KE+ ++
Sbjct: 173 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSA---MHASGVHPDVYTYSVLINGLCKESKMD 229

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           DA ++  +M E G+VP+ VT T L+  + K G +D A E ++ + S    PD   YN++I
Sbjct: 230 DANKLFDEMLEKGLVPNSVTFTTLIDGHCKNGWVDLAMEIYKQMLSQSLLPDLVTYNALI 289

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
                 G  K    L+D M   G++  +  Y  L+    + GD+  A +   +M  E  +
Sbjct: 290 YGLCKKGDLKQAHDLIDEMSMXGLKPDKITYTTLIDGCCKEGDLDTAFEHRKMMIQENIR 349

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
               + T L+    Q G    A      M+ +G KPD R    +I  + KK  + K   L
Sbjct: 350 LDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTRTYTMIINEFCKKGDVWKGSKL 409

Query: 455 LLELEKDGFEPGPATYTVLVD 475
           L E+++DG  P   TY VL++
Sbjct: 410 LKEMQRDGHVPSVVTYNVLMN 430



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 65/314 (20%), Positives = 146/314 (46%), Gaps = 7/314 (2%)

Query: 191 CKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWIN-LLDRLREQNTQLYFKVAELV-- 247
           C+ + + ++ L+  +       E  E   P+ + + N L+ R  ++      +VA+ V  
Sbjct: 110 CRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKEGD---IRVAQSVFD 166

Query: 248 -LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
            +++   + +V  Y+ L++ + +   L++  R+   M+ +G+ PD+ T +VL++   K  
Sbjct: 167 AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMHASGVHPDVYTYSVLINGLCKES 226

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            +D A + F+ +   G  P+   + ++I  +   G   L M +   M++  +      Y 
Sbjct: 227 KMDDANKLFDEMLEKGLVPNSVTFTTLIDGHCKNGWVDLAMEIYKQMLSQSLLPDLVTYN 286

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           AL+    + GD++ A  + + M +   +P   + T L++   + GD D A  +   MI+ 
Sbjct: 287 ALIYGLCKKGDLKQAHDLIDEMSMXGLKPDKITYTTLIDGCCKEGDLDTAFEHRKMMIQE 346

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
             + DD    ++I+   ++     A  +L E+   G +P   TYT++++   +   + + 
Sbjct: 347 NIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTRTYTMIINEFCKKGDVWKG 406

Query: 487 EQLLGKISELGEAP 500
            +LL ++   G  P
Sbjct: 407 SKLLKEMQRDGHVP 420



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 56/267 (20%), Positives = 110/267 (41%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E  +  ++  ++ L+    KE  +  A+ +   + + G+ P +V+   L++ Y + G+LD
Sbjct: 135 ECGYPASLYFFNILMHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 194

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
                  ++ + G  PD   Y+ +I       +      L D M+  G+  +   +  L+
Sbjct: 195 EGFRLKSAMHASGVHPDVYTYSVLINGLCKESKMDDANKLFDEMLEKGLVPNSVTFTTLI 254

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               + G V  A +I   M  +   P L +   L+    + GD  QA    D M   G K
Sbjct: 255 DGHCKNGWVDLAMEIYKQMLSQSLLPDLVTYNALIYGLCKKGDLKQAHDLIDEMSMXGLK 314

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     ++I    K+  LD A      + ++        YT L+  L +     +AE++
Sbjct: 315 PDKITYTTLIDGCCKEGDLDTAFEHRKMMIQENIRLDDVAYTALISGLCQEGRSVDAEKM 374

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAG 516
           L ++  +G  P  +    + + + + G
Sbjct: 375 LREMLSVGLKPDTRTYTMIINEFCKKG 401


>gi|357498921|ref|XP_003619749.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494764|gb|AES75967.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 680

 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 149/336 (44%), Gaps = 6/336 (1%)

Query: 216 ELLQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           +L+Q   + +  ++D + +++N    F +   ++S     +N+  YS LI        L+
Sbjct: 204 KLVQLDVVMYSTIIDSMCKDKNVNDAFDLYSEMVSRR-ISSNIVTYSALISGFCIVGKLK 262

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           DA  +  KM    I PD+ T  +LV  + K G +  AK     +   G +PD   YNS++
Sbjct: 263 DAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLM 322

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
             Y    +  +  S+++ M   G+  +   Y  ++  F +   V  A ++   M  ++  
Sbjct: 323 DGYCLVNEVNMAKSILNTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIF 382

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P + +   L++   ++G    A    D M   G +PD    +S++ A  K +L+DKA+ L
Sbjct: 383 PNVITYNSLIDGLCKSGRISYALELIDLMHDRGQQPDIITYSSILDALCKNHLVDKAIAL 442

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
           L++L+  G  P   TYT+L+D L +   + +A  +   +   G          +   +  
Sbjct: 443 LIKLKDQGIRPNMYTYTILIDGLCKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCS 502

Query: 515 AGIEKKALQALGFLEAKKEQMGPD--DFERIINGLL 548
            G+  +AL  L   + K     PD   +E II  L 
Sbjct: 503 HGLFDEALSLLS--KMKDNSCIPDAITYEIIICSLF 536



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 73/328 (22%), Positives = 135/328 (41%), Gaps = 39/328 (11%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           Q +V  YS +ID+  K+  + DA  +  +M    I  +IVT + L+  +   G L  A  
Sbjct: 207 QLDVVMYSTIIDSMCKDKNVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIG 266

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            F  + S    PD   +N ++ A+   G+ K   + + MM+  GI+     Y +L+  + 
Sbjct: 267 LFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYC 326

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
              +V  A  I N M       T+ S  +++  +                          
Sbjct: 327 LVNEVNMAKSILNTMSHRGVTATVRSYNIVINGF-------------------------- 360

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
           C   M+         D+A+ L  E+      P   TY  L+D L +   I+ A +L+  +
Sbjct: 361 CKIKMV---------DQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELIDLM 411

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGG 551
            + G+ P      S+ D   +  +  KA+  L  ++ K + + P+   +  +I+GL  GG
Sbjct: 412 HDRGQQPDIITYSSILDALCKNHLVDKAIALL--IKLKDQGIRPNMYTYTILIDGLCKGG 469

Query: 552 FLQDAQRVHGLMEAQGFAASERLKVALI 579
            L+DA+ +   +  +G+  +      +I
Sbjct: 470 RLEDARNIFEDLLVKGYNLTVNTYTVMI 497



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 51/244 (20%), Positives = 119/244 (48%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++ ++  + ++  Y+ L+D +   N +  A+ IL  M+  G+   + +  ++++ + K  
Sbjct: 305 MMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRGVTATVRSYNIVINGFCKIK 364

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            +D+A + F+ +      P+   YNS+I     +G+    + L+D+M   G +     Y 
Sbjct: 365 MVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELIDLMHDRGQQPDIITYS 424

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           ++L +  +   V  A  +   ++ +  +P + + T+L++   + G  + AR+ F+ ++  
Sbjct: 425 SILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDARNIFEDLLVK 484

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G+         MI  +    L D+AL+LL +++ +   P   TY +++  L      ++A
Sbjct: 485 GYNLTVNTYTVMIQGFCSHGLFDEALSLLSKMKDNSCIPDAITYEIIICSLFDKDENDKA 544

Query: 487 EQLL 490
           E+LL
Sbjct: 545 EKLL 548



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/314 (19%), Positives = 133/314 (42%), Gaps = 4/314 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N  +++ LI+   +   +  A  +L K+ + G  PD +T    +  +   G + +A    
Sbjct: 104 NFVNFNILINCFCQLGLIPFAFSVLAKILKMGYEPDTITLNTFIKGFCLKGQIHQALNFH 163

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + L + GF  D+  Y ++I      G+ +  + L+  +    ++    +Y  ++ S  + 
Sbjct: 164 DKLVALGFHLDQVSYGTLINGLCKVGETRAALELLRRVDGKLVQLDVVMYSTIIDSMCKD 223

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
            +V  A  + + M        + + + L+  +   G    A   F+ M      PD    
Sbjct: 224 KNVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENINPDVYTF 283

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             ++ A+ K+  + +A N L  + K G +P   TY  L+D    +  +N A+ +L  +S 
Sbjct: 284 NILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSH 343

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFL 553
            G     +    + + + +  +  +A++   F E   +Q+ P+   +  +I+GL   G +
Sbjct: 344 RGVTATVRSYNIVINGFCKIKMVDQAMKL--FKEMHHKQIFPNVITYNSLIDGLCKSGRI 401

Query: 554 QDAQRVHGLMEAQG 567
             A  +  LM  +G
Sbjct: 402 SYALELIDLMHDRG 415



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 13/170 (7%)

Query: 187 ITGKCKL-ITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAE 245
           I G CK+ + D+ + L KE          K++  P+ I + +L+D L +     Y    E
Sbjct: 357 INGFCKIKMVDQAMKLFKE-------MHHKQIF-PNVITYNSLIDGLCKSGRISY--ALE 406

Query: 246 LV--LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS 303
           L+  + +   Q ++  YS ++DA  K + ++ A  +L K+ + GI P++ T T+L+    
Sbjct: 407 LIDLMHDRGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLC 466

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMM 353
           K G L+ A+  FE L   G+      Y  MI  + + G     +SL+  M
Sbjct: 467 KGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALSLLSKM 516



 Score = 47.0 bits (110), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 63/271 (23%), Positives = 106/271 (39%), Gaps = 28/271 (10%)

Query: 219 QPSRIDWINLLDRLREQNTQLYFKVAELV-LSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           QP  I + ++LD L  +N  +   +A L+ L ++  + N+  Y+ LID   K   LEDA 
Sbjct: 417 QPDIITYSSILDALC-KNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDAR 475

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
            I + +   G    + T TV++  +   G  D A      ++ +   PD   Y  +I + 
Sbjct: 476 NIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALSLLSKMKDNSCIPDAITYEIIICSL 535

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA------------QCGDVRGAGQIT 385
            +  +      L+  MIT G+  S   Y +   SF             QC   + +G   
Sbjct: 536 FDKDENDKAEKLLREMITRGLLYSFLEYGSWSLSFMAAPAHFLNNDSLQCTSSQESGNWA 595

Query: 386 NIM--RIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI----RLGHKPDDRCTASMI 439
            ++  RI         C  ++          +  S   Y      + G+  D      MI
Sbjct: 596 KLLLERIY--------CDCVLTKSNMRDKDVECPSVIIYSTCDWSKQGYILDVNTYTVMI 647

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATY 470
             +    L D++L LL ++E +G  P   TY
Sbjct: 648 QGFCSHGLFDESLALLSKMEVNGCIPDAVTY 678


>gi|302794007|ref|XP_002978768.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
 gi|300153577|gb|EFJ20215.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
          Length = 713

 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 142/321 (44%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ ++D +A+      A ++ + M   G+ PDIVT  +LVH + KAG +D+A    E+++
Sbjct: 344 YAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVTYNILVHAFCKAGRMDKALGVLENIQ 403

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           ++   P  + Y S++  YV  G  +  + + D + T+G+      Y +LL   A+   + 
Sbjct: 404 ANRLLPTIETYTSILDGYVKGGHIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQME 463

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  + + M      P   S T L E Y +AGD ++A   F  M +     D     +++
Sbjct: 464 NARLMLDEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAYGALL 523

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            A  K   + +A+ +  ++   G +    TY  ++D   R   +++A  LL  + + G  
Sbjct: 524 KACCKSGAMQRAVEVFQQITDAGLKHNRITYCTMLDGWARKGELSKARDLLKDMQKHGFH 583

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
                  S      R+G  ++  + L  +  KK ++    +  +I+G LA      A   
Sbjct: 584 LDTICYTSFIKACFRSGDTEEVTETLAVMREKKLEVNARTYTTLIHGWLAAADPDQAISC 643

Query: 560 HGLMEAQGFAASERLKVALIS 580
           +   +A G      L   L+S
Sbjct: 644 YEQAKASGLQLDSALSNCLLS 664



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 144/323 (44%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ LI A+A+   +E A    ++M   GI  +      ++  Y+ AGN + A+  F
Sbjct: 165 NVHIYTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWF 224

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E  ++    P   VYNS++ AY  AG  +   +L+  M   G + +  +Y  +L  FA+ 
Sbjct: 225 EKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEI 284

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
            D        + ++     PT  +   +V+ + +AG+  +A    + M + G  P+    
Sbjct: 285 RDEEKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIY 344

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
           A ++  Y +      A  +  ++   G +P   TY +LV    +   +++A  +L  I  
Sbjct: 345 AMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVTYNILVHAFCKAGRMDKALGVLENIQA 404

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
               P  +   S+ D Y + G  +KAL+    ++    + G   +  +++GL     +++
Sbjct: 405 NRLLPTIETYTSILDGYVKGGHIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMEN 464

Query: 556 AQRVHGLMEAQGFAASERLKVAL 578
           A+ +   M A G   +ER   AL
Sbjct: 465 ARLMLDEMLANGVVPNERSYTAL 487



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 146/336 (43%)

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           +R+Y  L+D +A+      A    + M  + I P++   T L+H Y++A +++ A    E
Sbjct: 131 LREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVACTE 190

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
            + S G Q ++ V+ S+I  Y +AG  +      +      +     +Y ++++++ Q G
Sbjct: 191 EMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAG 250

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
           ++     +   M  E FQ  L   T ++  + +  D ++  S F  +   G  P      
Sbjct: 251 NMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYG 310

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
            ++  + K   + KAL++L E++K G  P    Y +++D   R      A ++   +   
Sbjct: 311 CIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSA 370

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDA 556
           G  P       L   + +AG   KAL  L  ++A +     + +  I++G + GG +Q A
Sbjct: 371 GLKPDIVTYNILVHAFCKAGRMDKALGVLENIQANRLLPTIETYTSILDGYVKGGHIQKA 430

Query: 557 QRVHGLMEAQGFAASERLKVALISSQTFNRQRQPTR 592
             V   ++  G         +L+S     RQ +  R
Sbjct: 431 LEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENAR 466



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 111/236 (47%), Gaps = 8/236 (3%)

Query: 248 LSEESFQTNVRDYSKLIDAHAK----ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS 303
           + EE FQ N+  Y+ +++  A+    E CL        ++   G+ P   T   +V +++
Sbjct: 262 MEEEGFQGNLGLYTTVLNGFAEIRDEEKCLS----FFHRLKACGLSPTAATYGCIVKLFT 317

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363
           KAGN+ +A +  E +  HG  P+K +Y  ++  Y   G       + + M+++G++    
Sbjct: 318 KAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIV 377

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
            Y  L+ +F + G +  A  +   ++     PT+E+ T +++ Y + G   +A   FD +
Sbjct: 378 TYNILVHAFCKAGRMDKALGVLENIQANRLLPTIETYTSILDGYVKGGHIQKALEVFDRI 437

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
              G +P      S+++   K   ++ A  +L E+  +G  P   +YT L +   R
Sbjct: 438 KTAGLRPGVVSYNSLLSGLAKARQMENARLMLDEMLANGVVPNERSYTALTEGYAR 493



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 73/346 (21%), Positives = 135/346 (39%), Gaps = 39/346 (11%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNL-- 308
           +  Q N   +  +I  +A     E AE   +K     +VP  +    +V  Y +AGN+  
Sbjct: 195 QGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNMET 254

Query: 309 ---------------------------------DRAKEAFESLRSHGFQPDKKVYNSMIM 335
                                            ++    F  L++ G  P    Y  ++ 
Sbjct: 255 VEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYGCIVK 314

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
            +  AG     + +++ M   G+  ++ IY  ++  +A+ GD   A ++   M     +P
Sbjct: 315 LFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKP 374

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
            + +  +LV A+ +AG  D+A    + +      P      S++  Y K   + KAL + 
Sbjct: 375 DIVTYNILVHAFCKAGRMDKALGVLENIQANRLLPTIETYTSILDGYVKGGHIQKALEVF 434

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
             ++  G  PG  +Y  L+  L + + +  A  +L ++   G  P  +   +L + YARA
Sbjct: 435 DRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLDEMLANGVVPNERSYTALTEGYARA 494

Query: 516 GIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRV 559
           G  +KA     F   KKE +  D   +  ++      G +Q A  V
Sbjct: 495 GDVEKAFGM--FQRMKKENLAIDIVAYGALLKACCKSGAMQRAVEV 538



 Score = 42.4 bits (98), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 68/166 (40%), Gaps = 3/166 (1%)

Query: 383 QITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH-KPDDRCTASMIAA 441
           +I N  ++ + +P L    LLV+ Y + GD   AR+ F+ M R  H KP+     S+I A
Sbjct: 118 KIVNAFQVID-KPVLREYGLLVDFYARHGDKVAARATFEAM-RASHIKPNVHIYTSLIHA 175

Query: 442 YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
           Y +   ++ A+    E+   G +   A +  ++           AE    K       P 
Sbjct: 176 YAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPG 235

Query: 502 FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
             +  S+   Y +AG  +     L  +E +  Q     +  ++NG 
Sbjct: 236 GIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGF 281


>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
 gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
          Length = 597

 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 138/320 (43%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E   Q N+  YS LID+  ++  + +A  I   M   GI PDI T T L+    K   
Sbjct: 224 MEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSR 283

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
              A      + S    PD   +N ++  +   G+    + ++  M   G+E +   Y +
Sbjct: 284 WKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSS 343

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+  ++   DV  A ++ ++M  +  +P + S  +L+  Y +A   D+A   F+ MI  G
Sbjct: 344 LMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQG 403

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P++    ++I  + +   L +A +L   +  +G  P   TY++L+D   +   + +A 
Sbjct: 404 LTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAF 463

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
           +L   +      P   +   L     ++G  K A +    L  +  Q     +  IINGL
Sbjct: 464 RLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGL 523

Query: 548 LAGGFLQDAQRVHGLMEAQG 567
              G L +A      MEA G
Sbjct: 524 CKEGLLDEALEAFRNMEADG 543



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 85/371 (22%), Positives = 156/371 (42%), Gaps = 16/371 (4%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESF--------QTNVRDYSKLIDAHAK 269
           LQP+ + +  L++ L         KV E   + E F        Q +V  Y+ +I+   K
Sbjct: 159 LQPTIVTFTTLINGL--------CKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCK 210

Query: 270 ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKV 329
                 A  +LKKM E G  P++VT + L+    +   ++ A + F  +++ G  PD   
Sbjct: 211 IGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFT 270

Query: 330 YNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389
           Y S+I       + K   +L++ M +  I      +  L+ +F + G V  A  +   M 
Sbjct: 271 YTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMT 330

Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD 449
               +P + + + L+  Y    D  +AR  F  MI  G KP+      +I  Y K   +D
Sbjct: 331 EMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRID 390

Query: 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLC 509
           +A+ L  E+   G  P   +Y  L+    +L  + EA+ L   +   G  P       L 
Sbjct: 391 EAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILL 450

Query: 510 DMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
           D + + G   KA +    +++   +     +  +++ +   G  +DA+++   +  QG  
Sbjct: 451 DGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQ 510

Query: 570 ASERLKVALIS 580
              +L   +I+
Sbjct: 511 PHVQLYTTIIN 521



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 140/310 (45%), Gaps = 21/310 (6%)

Query: 187 ITGKCKLITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKVAE 245
           I G CK          + ++ S LL E   L + P  + +  L+D   ++      KV+E
Sbjct: 275 IQGLCKF--------SRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEG-----KVSE 321

Query: 246 LV-----LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
            +     ++E   + NV  YS L+  ++    + +A ++   M   G  P+I +  +L++
Sbjct: 322 ALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILIN 381

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
            Y KA  +D A + F  +   G  P+   YN++I  +   G+ +    L   M T+G   
Sbjct: 382 GYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLP 441

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
               Y  LL  F + G +  A ++   M+    +P L   T+LV A  ++G+   AR  F
Sbjct: 442 DLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKLF 501

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
             +   G +P  +   ++I    K+ LLD+AL     +E DG  P   +Y V++   G L
Sbjct: 502 SELFVQGLQPHVQLYTTIINGLCKEGLLDEALEAFRNMEADGCPPDEISYNVIIR--GLL 559

Query: 481 QLINEAEQLL 490
           Q  +E+  LL
Sbjct: 560 QHKDESRALL 569



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 86/358 (24%), Positives = 158/358 (44%), Gaps = 6/358 (1%)

Query: 219 QPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           QP+ + +  L+D L R++       +    +  +    ++  Y+ LI    K +  ++A 
Sbjct: 230 QPNMVTYSTLIDSLCRDRLVNEALDIFS-YMKAKGISPDIFTYTSLIQGLCKFSRWKEAS 288

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
            +L +M    I+PDIVT  VLV  + K G +  A    +++   G +P+   Y+S++  Y
Sbjct: 289 ALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGY 348

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
                      L  +MIT G + +   Y  L+  + +   +  A Q+ N M  +   P  
Sbjct: 349 SLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNN 408

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
            S   L+  + Q G   +A+  F  M   G+ PD    + ++  + K+  L KA  L   
Sbjct: 409 VSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRA 468

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI 517
           ++    +P    YT+LV  + +     +A +L  ++   G  P  ++  ++ +   + G+
Sbjct: 469 MQSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGL 528

Query: 518 EKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQDAQRVHGLMEAQGFAASER 573
             +AL+A   +EA  +   PD+  +  II GLL       A  + G M  +GF A  R
Sbjct: 529 LDEALEAFRNMEA--DGCPPDEISYNVIIRGLLQHKDESRALLLVGEMRDRGFIADVR 584



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 85/365 (23%), Positives = 154/365 (42%), Gaps = 11/365 (3%)

Query: 211 LAEWKELLQ----PSRIDWINLLDRLREQNTQLYFKVAELVLSEE--SFQTNVRDYSKLI 264
           LA +  +L     P  I +  LL  + +   Q Y  V  L    E      N+   S  +
Sbjct: 77  LASFNHMLHRKPLPCIIQFAKLLSAIVKMG-QYYDVVISLSKQMELVGLSPNIYTLSIFM 135

Query: 265 DAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQ 324
           +   +   ++    +L K+ + G+ P IVT T L++   K G   +A E F+ + + G Q
Sbjct: 136 NCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQ 195

Query: 325 PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQI 384
           PD   YN++I      G+      L+  M  +G + +   Y  L+ S  +   V  A  I
Sbjct: 196 PDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDI 255

Query: 385 TNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGK 444
            + M+ +   P + + T L++   +     +A +  + M  L   PD      ++  + K
Sbjct: 256 FSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCK 315

Query: 445 KNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKI 504
           +  + +AL +L  + + G EP   TY+ L+        + EA +L   +   G  P    
Sbjct: 316 EGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFS 375

Query: 505 QVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQDAQRVHGL 562
              L + Y +A    +A+Q   F E   + + P++  +  +I+G    G L++AQ +   
Sbjct: 376 YNILINGYCKAKRIDEAMQL--FNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRN 433

Query: 563 MEAQG 567
           M   G
Sbjct: 434 MCTNG 438



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 109/278 (39%), Gaps = 31/278 (11%)

Query: 133 AEVEEKPKVITLPKRHGKIKYKIYGLDLSDPKWTEVAEKIHERGEMILPEEPKPITGKCK 192
            E+  +P V+T           +YG  L    WT+V E   +   +++ +  KP      
Sbjct: 330 TEMGVEPNVVTYSSL-------MYGYSL----WTDVVEA-RKLFHVMITKGCKPNIFSYN 377

Query: 193 LITDKILSLEKEEDPSPLLAEW-KELLQPSRIDWINL------LDRLREQNTQLYFKVAE 245
           ++ +     ++ ++   L  E   + L P+ + +  L      L +LRE         A+
Sbjct: 378 ILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLRE---------AQ 428

Query: 246 LVLSEESFQTNVRD---YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMY 302
            +        N+ D   YS L+D   K+  L  A R+ + M    + P++V  T+LVH  
Sbjct: 429 DLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAM 488

Query: 303 SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE 362
            K+GN   A++ F  L   G QP  ++Y ++I      G     +     M   G    E
Sbjct: 489 CKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEALEAFRNMEADGCPPDE 548

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
             Y  ++R   Q  D   A  +   MR   F   +  C
Sbjct: 549 ISYNVIIRGLLQHKDESRALLLVGEMRDRGFIADVRPC 586


>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
 gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
          Length = 500

 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 142/314 (45%), Gaps = 6/314 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +  + F  +V  Y+ +I A   EN L +A + L++M    + P++VT TVL+    K G 
Sbjct: 37  MVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGR 96

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D A      +R     P    YNS+I     A +      L++ M+ SG       Y  
Sbjct: 97  VDEAVALLSKMRKKCV-PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTT 155

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+  F +      A ++   +    F+P + + + L++   + G   +A   F  MI+ G
Sbjct: 156 LITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSG 215

Query: 428 H-KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
              P+     S+I+ + +   +D+A+NLL  + + G  P   TYT L++   +L  +++A
Sbjct: 216 SCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDA 275

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERII 544
             LL +++  G  P      SL D   R      A+  LG  E +++   P    +  I+
Sbjct: 276 YDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILG--EMRRKSCSPTVYTYNTIL 333

Query: 545 NGLLAGGFLQDAQR 558
           +G      L++A++
Sbjct: 334 DGYCRANQLEEARK 347



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 141/310 (45%), Gaps = 19/310 (6%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI    K     +A  +L++M  +G +PDI T T L+  + K+   D A   FE L 
Sbjct: 118 YNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLV 177

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI-YLALLRSFAQCGDV 378
           + GF+PD   Y+ +I      G+ K  + L   MI SG      + Y +L+  F + G +
Sbjct: 178 ARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKM 237

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             A  +   M      P + + T L+  + +    D A    + M R G  PD     S+
Sbjct: 238 DEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSL 297

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           +    ++N L  A+++L E+ +    P   TY  ++D   R   + EA + +  + E+ +
Sbjct: 298 MDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFM--LEEM-D 354

Query: 499 APP----FKIQV-SLCDMYARAGIEKKALQALGFL-EAKKEQMGPDD--FERIINGLLAG 550
            PP    F I +  LC +        ++ +A+  + EA++ +  PD   +  +I+GL   
Sbjct: 355 CPPNVVSFNIMIRGLCKV-------NRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCRE 407

Query: 551 GFLQDAQRVH 560
             + +A RV+
Sbjct: 408 KKVDEACRVY 417



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 116/288 (40%), Gaps = 8/288 (2%)

Query: 286 NGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKL 345
           N    D VT T L+    K   L++A      + S GF PD   Y ++I A     +   
Sbjct: 5   NSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHE 64

Query: 346 GMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVE 405
               ++ M    +  +   Y  L+    + G V  A  + + MR ++  PT  +   L+ 
Sbjct: 65  ARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMR-KKCVPTAVTYNSLIS 123

Query: 406 AYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
              +A    +A    + M+  G  PD     ++I  + K    D AL +  +L   GF P
Sbjct: 124 GLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRP 183

Query: 466 GPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQV-SLCDMYARAGIEKKALQA 524
              TY+ L+D L +   + EA  L G++ + G   P  +   SL   + R G   K  +A
Sbjct: 184 DVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMG---KMDEA 240

Query: 525 LGFLEAKKEQ-MGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
           +  LE   E    PD   +  ++NG      L DA  +   M  +G  
Sbjct: 241 MNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLT 288



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 78/358 (21%), Positives = 146/358 (40%), Gaps = 55/358 (15%)

Query: 218 LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
            +P  + +  L+D L +E   +    +   ++   S   N   Y+ LI    +   +++A
Sbjct: 181 FRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEA 240

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
             +L++M E G  PD+VT T L++ + K   LD A +    +   G  PD   + S++  
Sbjct: 241 MNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLM-- 298

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
                               G+ R   +  A+               I   MR +   PT
Sbjct: 299 -------------------DGLCRENRLSDAV--------------HILGEMRRKSCSPT 325

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMI-RLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
           + +   +++ Y +A   ++AR    +M+  +   P+      MI    K N   +A+ L+
Sbjct: 326 VYTYNTILDGYCRANQLEEARK---FMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELV 382

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVS-----LCD 510
            E  +    P    YT ++D L R + ++EA ++  K+ E     P  I  S     LC+
Sbjct: 383 EEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLITGLCN 442

Query: 511 M----YARAGIEKKALQALG----FLEAKKEQMGPDDFERIINGLLAGGF--LQDAQR 558
                 AR  IEK  +  +G     ++A ++    +D   +++ ++  GF  +Q  QR
Sbjct: 443 AGMLDRARGYIEKGCVPNIGTYNLLIDAFRKANRDEDARELLDDMVQRGFGGVQSHQR 500


>gi|110289336|gb|ABG66168.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
          Length = 484

 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 114/231 (49%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ +I+   KE  L+ A     +M + GI+P++VT + ++    KA  +D+A E  
Sbjct: 198 DVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVL 257

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
            S+  +G  P+ + YNS++  Y ++GQPK  +  +  M + G+E     Y +L+    + 
Sbjct: 258 TSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKN 317

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G    A ++ + M     +P + +   L++ Y   G   +     D M+R G  P+    
Sbjct: 318 GRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVF 377

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           + +I AY K+  +D+A+ +  ++ + G  P   TY  ++  L +   + +A
Sbjct: 378 SILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDA 428



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 123/275 (44%), Gaps = 8/275 (2%)

Query: 195 TDKILSLEKEEDPSPLLAEWKELLQ----PSRIDWINLLDRLREQNTQLYFKVAELVLS- 249
           T  I    KE D       + E+L     P+ + + +++  L +   Q   K  E++ S 
Sbjct: 203 TTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCK--AQAMDKAMEVLTSM 260

Query: 250 -EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNL 308
            +     N R Y+ ++  +      ++A   LKKM+ +G+ PD+VT   L+    K G  
Sbjct: 261 VKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRC 320

Query: 309 DRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLAL 368
             A++ F+S+   G +P+   Y +++  Y   G       L+D+M+ +GI  +  ++  L
Sbjct: 321 TEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSIL 380

Query: 369 LRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH 428
           + ++A+ G V  A  + + MR +   P   +   ++    ++G  + A   F+ MI    
Sbjct: 381 ICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERL 440

Query: 429 KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGF 463
            P +    S+I +    +  DKA +  L+   + F
Sbjct: 441 SPGNIVYNSLIHSLCIFDKWDKAKDYFLKCWIEAF 475



 Score = 46.2 bits (108), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 55/252 (21%), Positives = 108/252 (42%), Gaps = 13/252 (5%)

Query: 325 PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQI 384
           P+   Y  +I +   AG+  LG + +  +I  G       +  LL+    C D R +  +
Sbjct: 89  PNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGL--CADKRTSDAM 146

Query: 385 TNIMR-IEEFQ--PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK--PDDRCTASMI 439
             ++R + +    P + S  +L++         +A      M   G    PD     ++I
Sbjct: 147 DIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVI 206

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             + K+  LDKA     E+   G  P   TY+ ++  L + Q +++A ++L  + + G  
Sbjct: 207 NGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVM 266

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFL-EAKKEQMGPD--DFERIINGLLAGGFLQDA 556
           P  +   S+   Y  +G  K   +A+GFL +   + + PD   +  +++ L   G   +A
Sbjct: 267 PNCRTYNSIVHGYCSSGQPK---EAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEA 323

Query: 557 QRVHGLMEAQGF 568
           +++   M  +G 
Sbjct: 324 RKMFDSMTKRGL 335


>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 144/328 (43%), Gaps = 4/328 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ LI        L+       +M  NG +P++VT   L+  Y K G +D A    
Sbjct: 213 NVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLL 272

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           +S+ S G QP+   YN +I      G  K    +++ M   G    E  Y  LL  + + 
Sbjct: 273 KSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKE 332

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G+   A  I   M      P++ + T L+ +  +A + ++A   FD M   G +P++R  
Sbjct: 333 GNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTY 392

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I  + ++ LL++A  +L E+ + GF P   TY   +     L+ + EA  ++ ++ E
Sbjct: 393 TTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVE 452

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFL 553
            G AP      ++   + R G   +A Q     E  ++ + PD   +  +I GL     L
Sbjct: 453 KGLAPDVVSYSTIISGFCRKGELDRAFQMKQ--EMVEKGVSPDAVTYSSLIQGLCEMRRL 510

Query: 554 QDAQRVHGLMEAQGFAASERLKVALISS 581
            +A  +   M   G    E     LI++
Sbjct: 511 TEACDLSQEMLDMGLPPDEFTYTTLINA 538



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 141/314 (44%), Gaps = 4/314 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +S +  Q N+  Y+ +I+   +E  +++A  IL++M   G  PD VT   L++ Y K GN
Sbjct: 275 MSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGN 334

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
             +A      +  +G  P    Y ++I +   A      M   D M   G+  +E  Y  
Sbjct: 335 FHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTT 394

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+  F++ G +  A +I N M    F P++ +    +  +      ++A      M+  G
Sbjct: 395 LIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKG 454

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD    +++I+ + +K  LD+A  +  E+ + G  P   TY+ L+  L  ++ + EA 
Sbjct: 455 LAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEAC 514

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIIN 545
            L  ++ ++G  P      +L + Y   G   KAL      E   +   PD   +  +IN
Sbjct: 515 DLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHD--EMIHKGFLPDAVTYSVLIN 572

Query: 546 GLLAGGFLQDAQRV 559
           GL      ++A+R+
Sbjct: 573 GLNKQARTREAKRL 586



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 98/413 (23%), Positives = 177/413 (42%), Gaps = 52/413 (12%)

Query: 218 LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           +QP+ I +  +++ L RE + +  +++ E  +  + F  +   Y+ L++ + KE     A
Sbjct: 280 MQPNLISYNVIINGLCREGSMKEAWEILE-EMGYKGFTPDEVTYNTLLNGYCKEGNFHQA 338

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
             I  +M  NG+ P +VT T L++   KA NL+RA E F+ +R  G +P+++ Y ++I  
Sbjct: 339 LVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDG 398

Query: 337 YVNAGQPKLGMSLVDMMITSG-----------------IERSEEI--------------- 364
           +   G       +++ M  SG                 +ER EE                
Sbjct: 399 FSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPD 458

Query: 365 ---YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421
              Y  ++  F + G++  A Q+   M  +   P   + + L++   +     +A     
Sbjct: 459 VVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQ 518

Query: 422 YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ 481
            M+ +G  PD+    ++I AY  +  L+KAL+L  E+   GF P   TY+VL++ L +  
Sbjct: 519 EMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQA 578

Query: 482 LINEAEQLLGKISELGEAPP---------------FKIQVSLCDMYARAGIEKKALQALG 526
              EA++LL K+      P                FK  V+L   +   G+  +A +   
Sbjct: 579 RTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFE 638

Query: 527 FLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
            +  +  + G   +  II+G   GG L  A  ++  M   GF       + LI
Sbjct: 639 SMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLI 691



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 142/309 (45%), Gaps = 8/309 (2%)

Query: 253 FQTNVRDYSKLIDA--HAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           F   V  Y+ ++DA   ++ +    AE + ++M  + + P++ T  +L+  +   G L +
Sbjct: 173 FMPGVLSYNSVLDAIVRSRGSVKLSAEEVYREMIRSRVSPNVYTYNILIRGFCSVGELQK 232

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
               F  +  +G  P+   YN++I AY   G+      L+  M + G++ +   Y  ++ 
Sbjct: 233 GLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIIN 292

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
              + G ++ A +I   M  + F P   +   L+  Y + G+  QA      M+R G  P
Sbjct: 293 GLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSP 352

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
                 ++I +  K   L++A+    ++   G  P   TYT L+D   R  L+NEA ++L
Sbjct: 353 SVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRIL 412

Query: 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ-MGPD--DFERIINGL 547
            +++E G +P      +   ++    +E+   +ALG ++   E+ + PD   +  II+G 
Sbjct: 413 NEMTESGFSPSVVTYNAF--IHGHCVLERME-EALGVVQEMVEKGLAPDVVSYSTIISGF 469

Query: 548 LAGGFLQDA 556
              G L  A
Sbjct: 470 CRKGELDRA 478



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 77/346 (22%), Positives = 136/346 (39%), Gaps = 57/346 (16%)

Query: 218 LQPSRIDWINLLDRLREQN--TQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLED 275
           L+P+   +  L+D    Q    + Y  + E+  +E  F  +V  Y+  I  H     +E+
Sbjct: 385 LRPNERTYTTLIDGFSRQGLLNEAYRILNEM--TESGFSPSVVTYNAFIHGHCVLERMEE 442

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A  ++++M E G+ PD+V+ + ++  + + G LDRA +  + +   G  PD   Y+S+I 
Sbjct: 443 ALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQ 502

Query: 336 -----------------------------------AYVNAGQPKLGMSLVDMMITSGIER 360
                                              AY   G     + L D MI  G   
Sbjct: 503 GLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLP 562

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT-------LESCT--------LLVE 405
               Y  L+    +    R A ++   +  EE  P+       +E+C+         L++
Sbjct: 563 DAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIK 622

Query: 406 AYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
            +   G   +A   F+ M+   HKP +     +I  + +   L KA NL  E+   GF P
Sbjct: 623 GFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVP 682

Query: 466 GPATYTVLVDWLGRLQLINEAEQLLG---KISELGEAPPFKIQVSL 508
              T   L+  L +  +  E  +++G   +   L EA   K+ V +
Sbjct: 683 HTVTVITLIKALFKEGMNEEMSEVIGDTLRSCRLNEAELAKVLVEI 728



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 73/315 (23%), Positives = 131/315 (41%), Gaps = 12/315 (3%)

Query: 272 CLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYN 331
           CL+D+  +    N +  V D+     +V  YS    +D+A       +S GF P    YN
Sbjct: 130 CLKDSYHVY---NSSSAVFDL-----MVKSYSHLNMIDQAVNTINLAKSSGFMPGVLSYN 181

Query: 332 SMIMAYVNA-GQPKLGMSLVDM-MITSGIERSEEIYLALLRSFAQCGDV-RGAGQITNIM 388
           S++ A V + G  KL    V   MI S +  +   Y  L+R F   G++ +G G    + 
Sbjct: 182 SVLDAIVRSRGSVKLSAEEVYREMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEME 241

Query: 389 RIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLL 448
           R     P + +   L++AY + G  D+A      M   G +P+      +I    ++  +
Sbjct: 242 R-NGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSM 300

Query: 449 DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSL 508
            +A  +L E+   GF P   TY  L++   +    ++A  +  ++   G +P      +L
Sbjct: 301 KEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTAL 360

Query: 509 CDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
            +   +A    +A++    +  +  +     +  +I+G    G L +A R+   M   GF
Sbjct: 361 INSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGF 420

Query: 569 AASERLKVALISSQT 583
           + S     A I    
Sbjct: 421 SPSVVTYNAFIHGHC 435



 Score = 45.1 bits (105), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 51/256 (19%), Positives = 97/256 (37%), Gaps = 50/256 (19%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS LI    +   L +A  + ++M + G+ PD  T T L++ Y   G+L++A    + + 
Sbjct: 497 YSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMI 556

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV-----------DMMITSGIERSEEI---- 364
             GF PD   Y+ +I       + +    L+           D+   + IE    I    
Sbjct: 557 HKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKS 616

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
            +AL++ F   G +  A ++   M     +P      +++  + + G+  +A + +  MI
Sbjct: 617 VVALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMI 676

Query: 425 RLGHKPDDRCTASMIAAYGKKNL-----------------------------------LD 449
             G  P      ++I A  K+ +                                   ++
Sbjct: 677 HSGFVPHTVTVITLIKALFKEGMNEEMSEVIGDTLRSCRLNEAELAKVLVEINHKEGNME 736

Query: 450 KALNLLLELEKDGFEP 465
             LN+L ++ KDG  P
Sbjct: 737 AVLNVLTDMAKDGLLP 752


>gi|356499079|ref|XP_003518371.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Glycine max]
          Length = 615

 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 117/254 (46%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           V+  E    +V  +S LI+   KE  L++   +  +M   G+VP+ VT T L+    K G
Sbjct: 308 VMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDGQCKGG 367

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            +D A + F+ + + G +PD   YN++I      G  K    LV+ M  SG++  +  + 
Sbjct: 368 KVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTASGLKPDKITFT 427

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+    + GD+  A +I   M  E  +    + T L+    + G    A      M+  
Sbjct: 428 TLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCREGRVHDAGRMLTDMLSA 487

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G KPDD     +I  + KK  +     LL E++ DG  PG  TY  L++ L +   +  A
Sbjct: 488 GFKPDDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQMKNA 547

Query: 487 EQLLGKISELGEAP 500
           + LL  +  +G AP
Sbjct: 548 KMLLDAMLNVGVAP 561



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 121/281 (43%), Gaps = 3/281 (1%)

Query: 244 AELVLSE---ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
           A LV  E      +  V  ++ LI    K   +E+  R+   M   G+ PD+ T + L++
Sbjct: 267 ARLVFDEIPKRGLRPTVVSFNTLISGCCKSGDVEEGFRLKGVMESEGVCPDVFTFSALIN 326

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
              K G LD     F+ +   G  P+   + ++I      G+  L +    MM+  G+  
Sbjct: 327 GLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRP 386

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
               Y AL+    + GD++ A ++ N M     +P   + T L++   + GD + A    
Sbjct: 387 DLVTYNALINGLCKVGDLKEARRLVNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIK 446

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
             M+  G + DD    ++I+   ++  +  A  +L ++   GF+P   TYT+++D   + 
Sbjct: 447 RRMVEEGIELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCKK 506

Query: 481 QLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKA 521
             +    +LL ++   G  P      +L +   + G  K A
Sbjct: 507 GDVKMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQMKNA 547



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 67/152 (44%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++ LID   K+  +E A  I ++M E GI  D V  T L+    + G +  A      + 
Sbjct: 426 FTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCREGRVHDAGRMLTDML 485

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           S GF+PD   Y  +I  +   G  K+G  L+  M + G       Y AL+    + G ++
Sbjct: 486 SAGFKPDDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQMK 545

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAG 411
            A  + + M      P   +  +L++ + + G
Sbjct: 546 NAKMLLDAMLNVGVAPNDITYNILLDGHSKHG 577



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 77/160 (48%), Gaps = 2/160 (1%)

Query: 218 LQPSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L+P +I +  L+D   ++ + +   ++   ++ EE  + +   ++ LI    +E  + DA
Sbjct: 419 LKPDKITFTTLIDGCCKDGDMESALEIKRRMV-EEGIELDDVAFTALISGLCREGRVHDA 477

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
            R+L  M   G  PD  T T+++  + K G++    +  + ++S G  P    YN+++  
Sbjct: 478 GRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTYNALMNG 537

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
               GQ K    L+D M+  G+  ++  Y  LL   ++ G
Sbjct: 538 LCKQGQMKNAKMLLDAMLNVGVAPNDITYNILLDGHSKHG 577



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 52/273 (19%), Positives = 100/273 (36%), Gaps = 35/273 (12%)

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           ++R+   +  +   G+ P    +N ++  +  AG       + D +   G+  +   +  
Sbjct: 229 IERSWALYLEVLDSGYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNT 288

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    + GDV    ++  +M  E   P + + + L+    + G  D+    FD M   G
Sbjct: 289 LISGCCKSGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRG 348

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P+     ++I    K   +D AL     +   G  P   TY  L++ L ++  + EA 
Sbjct: 349 LVPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEAR 408

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
           +L+ +++  G  P  KI                                   F  +I+G 
Sbjct: 409 RLVNEMTASGLKPD-KIT----------------------------------FTTLIDGC 433

Query: 548 LAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
              G ++ A  +   M  +G    +    ALIS
Sbjct: 434 CKDGDMESALEIKRRMVEEGIELDDVAFTALIS 466


>gi|414875530|tpg|DAA52661.1| TPA: hypothetical protein ZEAMMB73_467633 [Zea mays]
          Length = 987

 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 119/253 (47%), Gaps = 3/253 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E+     V  Y+ LI    K++  ++A R+ + M +NG+ PD     VL     K+G 
Sbjct: 519 MQEDGITPGVIAYTTLIQGQCKKHEFDNAFRLFEMMEKNGLTPDEQAYNVLTDALCKSG- 577

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
             RA+EA+  L   G    K  Y S++  +  AG       L++ M+  G +     Y  
Sbjct: 578 --RAEEAYSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSV 635

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           LL++  +   +  A  I + M +   +  + + T+++    + G  D A+S F+ MI  G
Sbjct: 636 LLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSG 695

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
           HKP        I++Y K   +++A +L+ E+E+DG  P   TY + ++  G +  ++ A 
Sbjct: 696 HKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVTPDVVTYHIFINGCGHMGYMDRAF 755

Query: 488 QLLGKISELGEAP 500
             L ++ +    P
Sbjct: 756 STLKRMVDASCEP 768



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 141/334 (42%), Gaps = 8/334 (2%)

Query: 246 LVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKA 305
           LVLS + +   +R   +        +  E   ++   + + G++PD VT   ++  Y K 
Sbjct: 140 LVLSPKCYNLALRSLLRF-------DMTEYMGKLYSHLVQEGLLPDTVTYNTMIMAYCKK 192

Query: 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
           G+L  A   F  LR  G Q D    N++++ Y      +    L+ MM   G  R+E  Y
Sbjct: 193 GSLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSDLRKACWLLMMMPLMGCRRNEYSY 252

Query: 366 LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
             L++   +   VR A  +  +M  +     L   TLL++   + G    AR   D M  
Sbjct: 253 TILIQGLYEARCVREALVLVFMMVQDGCSLNLHMYTLLIKGLCKEGRIHDARGLLDEMPL 312

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
            G  P      +MI  Y K   +  AL +   +E++G  P   TY  L+  L   +L +E
Sbjct: 313 RGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYGLCGGKL-DE 371

Query: 486 AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIIN 545
           AE+LL      G  P      +L + Y +A     AL+    + +   ++    +  +IN
Sbjct: 372 AEELLNGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLIN 431

Query: 546 GLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
            L+    L++A+     M A G A +  +  ++I
Sbjct: 432 VLIKKCRLKEAKETLNEMFANGLAPNVVIYTSII 465



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 125/296 (42%), Gaps = 4/296 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ +ID + K   ++DA  I   M +NG  PD  T   L++     G LD A+E  
Sbjct: 318 SVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYGLC-GGKLDEAEELL 376

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
               + GF P    + ++I  Y  A +    + +   MI+S  +   + Y  L+    + 
Sbjct: 377 NGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKK 436

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
             ++ A +  N M      P +   T +++ Y + G    A   F  M   G  P+    
Sbjct: 437 CRLKEAKETLNEMFANGLAPNVVIYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTY 496

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            S+I    +   L KA+ L+ ++++DG  PG   YT L+    +    + A +L   + +
Sbjct: 497 GSLIYGLIQDKKLHKAMALITKMQEDGITPGVIAYTTLIQGQCKKHEFDNAFRLFEMMEK 556

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGG 551
            G  P  +    L D   ++G   +A +A  FL  K   +    +  +++G    G
Sbjct: 557 NGLTPDEQAYNVLTDALCKSG---RAEEAYSFLVRKGVVLTKVTYTSLVDGFSKAG 609



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 70/329 (21%), Positives = 129/329 (39%), Gaps = 3/329 (0%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F   V  ++ LI+ + K   ++DA R+   M  +    D+    VL+++  K   L  AK
Sbjct: 384 FTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAK 443

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           E    + ++G  P+  +Y S+I  Y   G     + +  +M   G   +   Y +L+   
Sbjct: 444 ETLNEMFANGLAPNVVIYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGL 503

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            Q   +  A  +   M+ +   P + + T L++   +  + D A   F+ M + G  PD+
Sbjct: 504 IQDKKLHKAMALITKMQEDGITPGVIAYTTLIQGQCKKHEFDNAFRLFEMMEKNGLTPDE 563

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
           +    +  A  K    ++A + L+   + G      TYT LVD   +    + A  L+ K
Sbjct: 564 QAYNVLTDALCKSGRAEEAYSFLV---RKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEK 620

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
           +   G          L     +     +AL  L  +     +     +  II+ ++  G 
Sbjct: 621 MVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGK 680

Query: 553 LQDAQRVHGLMEAQGFAASERLKVALISS 581
              A+ +   M + G   S       ISS
Sbjct: 681 HDHAKSLFNEMISSGHKPSATTYTVFISS 709



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 86/216 (39%), Gaps = 59/216 (27%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF---- 315
           Y+  I ++ K   +E+AE ++ +M  +G+ PD+VT  + ++     G +DRA        
Sbjct: 703 YTVFISSYCKIGQIEEAEHLIGEMERDGVTPDVVTYHIFINGCGHMGYMDRAFSTLKRMV 762

Query: 316 -----------------------------------------------ESLRSHGFQPDKK 328
                                                          E +  HG  P   
Sbjct: 763 DASCEPNCWTYWLLLKHFLKMSLINAHYIDTSGMWNWIELNTVWQLLERMMKHGLNPTVV 822

Query: 329 VYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQ----I 384
            Y+S+I  +  A + +    L+D M+   I  +EEIY  L++    C D++  G+    +
Sbjct: 823 TYSSIIAGFCKATRLEEACVLLDHMLGKAISPNEEIYTMLIKC---CCDIKLFGKDVSFV 879

Query: 385 TNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
           T+++    FQP LES   L+      GD D+A+S F
Sbjct: 880 TDMIEF-GFQPQLESYHYLIVGLCDEGDYDRAKSLF 914


>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
 gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
          Length = 695

 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 139/313 (44%), Gaps = 4/313 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +VR ++ LI    +   +E+A +I K+M   GI PD+V+ + L+ ++++ G +D A    
Sbjct: 199 DVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYL 258

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +R  G  PD  +Y  +I  +  AG     + + D M+  G       Y  LL    + 
Sbjct: 259 REMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKE 318

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
             +  A  + N MR     P L + T L+  Y   G  D+A   FD M+    +PD    
Sbjct: 319 RRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTY 378

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I    ++  LDKA +L  ++      P   TY++L+D       + +A   L ++  
Sbjct: 379 NTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMIN 438

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFL 553
            G  P      S+   Y R+G   K  + L  +   K  + PD   +  +I+G +    +
Sbjct: 439 KGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNK--VSPDLITYNTLIHGYIKEDKM 496

Query: 554 QDAQRVHGLMEAQ 566
            DA ++  +ME +
Sbjct: 497 HDAFKLLNMMEKE 509



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 125/268 (46%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ L++   KE  L DAE +L +M E G+ PD+ T T L+H Y   G LD+A + F
Sbjct: 304 DVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLF 363

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           +++ +   +PD   YN++I      G       L D M +  I  +   Y  L+ S  + 
Sbjct: 364 DTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEK 423

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G V  A    + M  +   P + +   +++ Y ++G+  + +     M+     PD    
Sbjct: 424 GQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITY 483

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I  Y K++ +  A  LL  +EK+  +P   TY +L++       + EA  +  K+  
Sbjct: 484 NTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCA 543

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQ 523
            G  P     +S+ + +  AG  K+A Q
Sbjct: 544 KGIEPDRYTYMSMINGHVTAGNSKEAFQ 571



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 144/340 (42%), Gaps = 5/340 (1%)

Query: 246 LVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKA 305
           LV S  S + N    + ++  + K    +  + ++ +M +  + PD+VT  V+V    +A
Sbjct: 85  LVFSSNS-EVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRA 143

Query: 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
           G+ + A    +S+ S G +P    YNS++     +G       +   M   G+      +
Sbjct: 144 GDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSF 203

Query: 366 LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
             L+  F + G++  A +I   MR    +P L S + L+  + + G  D A +    M  
Sbjct: 204 TILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRC 263

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
            G  PD      +I  + +  L+  AL +  E+   G  P   TY  L++ L + + + +
Sbjct: 264 FGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLD 323

Query: 486 AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERI 543
           AE LL ++ E G  P      +L   Y   G   KALQ   F     +++ PD   +  +
Sbjct: 324 AEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQL--FDTMLNQRLRPDIVTYNTL 381

Query: 544 INGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQT 583
           I+G+   G L  A  +   M ++    +      LI S  
Sbjct: 382 IDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHC 421



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 105/211 (49%), Gaps = 2/211 (0%)

Query: 218 LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L+P  + +  L+D + R+ +      + + + S E F  +V  YS LID+H ++  +EDA
Sbjct: 371 LRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHV-TYSILIDSHCEKGQVEDA 429

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
              L +M   GI+P+I+T   ++  Y ++GN+ + ++  + +  +   PD   YN++I  
Sbjct: 430 FGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHG 489

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           Y+   +      L++MM    ++     Y  L+  F+  G+V+ AG I   M  +  +P 
Sbjct: 490 YIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPD 549

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
             +   ++  +  AG+  +A    D M++ G
Sbjct: 550 RYTYMSMINGHVTAGNSKEAFQLHDEMLQRG 580



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/317 (22%), Positives = 137/317 (43%), Gaps = 24/317 (7%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
            +  + ++  Y+ LID   ++  L+ A  +   M+   I P+ VT ++L+  + + G ++
Sbjct: 368 NQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVE 427

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A    + + + G  P+   YNS+I  Y  +G    G   +  M+ + +      Y  L+
Sbjct: 428 DAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLI 487

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
             + +   +  A ++ N+M  E+ QP + +  +L+  +   G+  +A   F+ M   G +
Sbjct: 488 HGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIE 547

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     SMI  +       +A  L  E+ + G E   A  TV       + + N AE L
Sbjct: 548 PDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGKEKRRAAGTVQF-----VNIQNSAESL 602

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG-PDDFE------- 541
                   +  P  ++V+ C +Y  A  ++ A++   F+    E+   P +F+       
Sbjct: 603 --------KQMPMDLKVT-CSIYFFAKTQEFAIRGCAFVFGALEKSSTPLNFQGTRSLED 653

Query: 542 --RIINGLLAGGFLQDA 556
             +I+ GLL      DA
Sbjct: 654 HWKILVGLLGSLVHPDA 670



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 117/274 (42%), Gaps = 6/274 (2%)

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           +L+  Y+++     A EAF  +  H         N+++ A   AG P L      ++ +S
Sbjct: 30  LLIRTYTQSRKPREAFEAFRLILDHRVPIPAAASNALLAALSRAGWPHLAADAYRLVFSS 89

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
             E +      ++ ++ +  +      + + M      P + +  ++V+A  +AGD + A
Sbjct: 90  NSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAA 149

Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476
            +  D M+  G KP      S++    +  + DKA  +  E++  G  P   ++T+L+  
Sbjct: 150 MALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGG 209

Query: 477 LGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFL-EAKKEQM 535
             R+  I EA ++  ++   G  P       L  ++AR G   K   A+ +L E +   +
Sbjct: 210 FCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRG---KMDHAMAYLREMRCFGL 266

Query: 536 GPDD--FERIINGLLAGGFLQDAQRVHGLMEAQG 567
            PD   +  +I G    G + DA RV   M   G
Sbjct: 267 VPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCG 300


>gi|147803305|emb|CAN75473.1| hypothetical protein VITISV_002797 [Vitis vinifera]
          Length = 1356

 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/364 (22%), Positives = 152/364 (41%), Gaps = 35/364 (9%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F+ +V   + ++ +  K+   E    + ++M++ GI P++ T  +L++     GNL +A 
Sbjct: 194 FKPSVYTCNMILASMVKDKRTELVWSLFREMSDKGICPNVGTFNILINGLCVEGNLKKAG 253

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE------------- 359
              + +  +GF P    YN+++  Y   G+ K  + L+D MI  GIE             
Sbjct: 254 NLLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNL 313

Query: 360 ----RSEEIYL------------------ALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
               RS + YL                   L+  F + G +  A Q+ N M   +  P  
Sbjct: 314 CTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNC 373

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
            +   L+  +   GD ++A    D+M   G + ++    +++    K    + A  LL  
Sbjct: 374 VTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLER 433

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI 517
           +  +    G   YTVL+D L +  +++EA QL+G + + G  P      SL + + R G 
Sbjct: 434 MRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGN 493

Query: 518 EKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVA 577
            K A + +  +      +    +  +I      G + +A +V+ +M   G  A       
Sbjct: 494 IKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNV 553

Query: 578 LISS 581
           L+SS
Sbjct: 554 LVSS 557



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 107/237 (45%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  L++   K    E A+R+L++M  N +V   +  TVL+    K G LD A +   ++ 
Sbjct: 411 YGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMY 470

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  PD   Y+S+I  +   G  K    ++  M  SG+  ++ IY  L+ +F Q G+V 
Sbjct: 471 KDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVT 530

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++  +M          +C +LV +  + G   +A     +M R+G  P+      +I
Sbjct: 531 EAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCII 590

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
             YG       A +   ++ K G  P   TY  L+  L +   + EA++ L ++  +
Sbjct: 591 NGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYI 647



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 140/339 (41%), Gaps = 22/339 (6%)

Query: 229 LDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAH--AKENCLEDAERILKKMNEN 286
           L +LR  + +L  K  + V+ +   +     +   + AH   K    + A+ IL+ + + 
Sbjct: 82  LKQLRPVHGRLALKFLKWVIKQPGLELKHLTHMYCLTAHILVKARMYDSAKSILRHLCQM 141

Query: 287 GI------------------VPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKK 328
           GI                  +P +    +L+ +Y K G +D A E FE +   GF+P   
Sbjct: 142 GIGSKSIFGALMDTYPLCNSIPSVFD--LLIRVYLKEGMIDYAVETFELVGLVGFKPSVY 199

Query: 329 VYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIM 388
             N ++ + V   + +L  SL   M   GI  +   +  L+      G+++ AG +   M
Sbjct: 200 TCNMILASMVKDKRTELVWSLFREMSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQM 259

Query: 389 RIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLL 448
               F PT+ +   L+  Y + G    A    DYMI  G + D       I      +  
Sbjct: 260 EENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRS 319

Query: 449 DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSL 508
            KA  LL ++ K+   P   TY  L++   +   I  A Q+  ++S+   +P      +L
Sbjct: 320 AKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNAL 379

Query: 509 CDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
              +   G  ++AL+ L  +EA   ++    +  ++NGL
Sbjct: 380 IGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGTLLNGL 418



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 67/335 (20%), Positives = 137/335 (40%), Gaps = 2/335 (0%)

Query: 218  LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
            L P+ + +  L+D L +  + +  F   E ++ + +    V  ++ +ID+ ++   +  A
Sbjct: 720  LFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVA-FNAIIDSCSRRGQMMKA 778

Query: 277  ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
                  M   G+ P++ T  +L+H +SK   L R    + ++   G  PDK  ++S+I+ 
Sbjct: 779  NDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILG 838

Query: 337  YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
               +G P LG+ L+  MI  G    +  +  L+  +++ G +R A  + N M      P 
Sbjct: 839  LSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGVFPD 898

Query: 397  LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
             ++   +     +     ++      M+  G  P      ++I    +   +  A  L  
Sbjct: 899  RDTYNHIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKLKD 958

Query: 457  ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
            E+E  GF       + +V  L       +A  +L  +  +   P      +L   + R  
Sbjct: 959  EMEALGFGSHEVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDA 1018

Query: 517  IEKKALQALGFLEAKKEQMGPDDFERIINGLLAGG 551
               +AL+  G +E    ++    +  +I G+ A G
Sbjct: 1019 KIAEALKLKGVMELCGLKLDVVAYNVLIMGMCANG 1053



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 74/346 (21%), Positives = 133/346 (38%), Gaps = 41/346 (11%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           +  + +V  Y+  ID     +    A  +LKKM +  I P+ VT   L++ + K G +  
Sbjct: 297 KGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGV 356

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A + F  +      P+   YN++I  + + G  +  + L+D M  +G+  +E  Y  LL 
Sbjct: 357 AAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGTLLN 416

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
              +      A ++   MR+ +      + T+L++   + G  D+A      M + G  P
Sbjct: 417 GLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNP 476

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYT------------------- 471
           D    +S+I  + +   +  A  ++  + + G       Y+                   
Sbjct: 477 DVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVY 536

Query: 472 ----------------VLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
                           VLV  L R   + EAE+ L  +S +G  P       + + Y   
Sbjct: 537 AVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSI 596

Query: 516 GIEKKALQALGFL-EAKKEQMGPDDFE--RIINGLLAGGFLQDAQR 558
           G     L A  F  +  K    P  F    ++ GL  GG L +A++
Sbjct: 597 G---DPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKK 639



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 74/328 (22%), Positives = 135/328 (41%), Gaps = 15/328 (4%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+    K   L +A  +  KM +N ++PD  T + L+    + G    A   F +  
Sbjct: 656 YNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAM 715

Query: 320 SHG-FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
             G   P+  +Y  ++     AG PK      + M+  G       + A++ S ++ G +
Sbjct: 716 GRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQM 775

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             A    + MR     P L +  +L+  + +     +  S +  M+R G  PD     S+
Sbjct: 776 MKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSL 835

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           I    K  + D  + LL ++  +G      T+ +L++       + +A  L+  ++ LG 
Sbjct: 836 ILGLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGV 895

Query: 499 APPFKIQVSLCDMYARA--GIEKKAL---QALGFLEAKKEQMGPDDFERI--INGLLAGG 551
            P         D Y     G+ KK+      +   E  +  + P   + I  ING+   G
Sbjct: 896 FPDR-------DTYNHIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLINGMCRVG 948

Query: 552 FLQDAQRVHGLMEAQGFAASERLKVALI 579
            +Q A ++   MEA GF + E  + A++
Sbjct: 949 DIQGAFKLKDEMEALGFGSHEVAESAMV 976



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 64/291 (21%), Positives = 123/291 (42%), Gaps = 5/291 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNE-NGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318
           Y  L+    K   L +A++ L +++   G V  ++ +T+L     K+GNL  A   F+ +
Sbjct: 621 YGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAET-CKSGNLHEAVALFDKM 679

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG-IERSEEIYLALLRSFAQCGD 377
             +   PD   Y+S++      G+    + L    +  G +  +  +Y  L+   ++ G 
Sbjct: 680 VQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTCLVDGLSKAGH 739

Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
            + A      M  +   P   +   ++++  + G   +A   F  M   G  P+      
Sbjct: 740 PKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNI 799

Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK-ISEL 496
           ++  + KK  L + L+L   + ++G  P   T+  L+  L +  + +   +LLGK I E 
Sbjct: 800 LLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGVKLLGKMIMEG 859

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
             A  F   + L + Y+ +G  +KA   + F+         D +  I NGL
Sbjct: 860 TLADQFTFNI-LINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGL 909



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 56/273 (20%), Positives = 108/273 (39%), Gaps = 35/273 (12%)

Query: 260  YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
            +  LI   +K    +   ++L KM   G + D  T  +L++ YS++G + +A +    + 
Sbjct: 832  FHSLILGLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMRKAFDLVNFMN 891

Query: 320  SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
            + G  PD+  YN +          +    ++  M+ +G+      Y+ L+    + GD++
Sbjct: 892  TLGVFPDRDTYNHIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQ 951

Query: 380  GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            GA ++ + M    F     + + +V      G  + A    D+M+R+   P      +++
Sbjct: 952  GAFKLKDEMEALGFGSHEVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLM 1011

Query: 440  AAYGKKNLLDKALNL-----LLELEKD-------------------GFE----------- 464
              + +   + +AL L     L  L+ D                    FE           
Sbjct: 1012 HRFCRDAKIAEALKLKGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLC 1071

Query: 465  PGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
            P   TY VLVD +     + + E+LL  + E G
Sbjct: 1072 PNITTYAVLVDAISAANNLIQGEKLLTDLQERG 1104



 Score = 47.4 bits (111), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 45/241 (18%), Positives = 107/241 (44%), Gaps = 12/241 (4%)

Query: 258  RD-YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
            RD Y+ + +   K++   ++  +L +M ENG++P       L++   + G++  A +  +
Sbjct: 899  RDTYNHIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKLKD 958

Query: 317  SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
             + + GF   +   ++M+   ++ G+ +  M ++D M+   +  +   +  L+  F +  
Sbjct: 959  EMEALGFGSHEVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDA 1018

Query: 377  DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
             +  A ++  +M +   +  + +  +L+      GD   A   ++ M      P+    A
Sbjct: 1019 KIAEALKLKGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPNITTYA 1078

Query: 437  SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN-EAEQLLGKISE 495
             ++ A    N L +   LL +L++ G          L+ W G  Q ++ E    +GK++ 
Sbjct: 1079 VLVDAISAANNLIQGEKLLTDLQERG----------LISWGGSTQHLDKELTVAMGKLNY 1128

Query: 496  L 496
            +
Sbjct: 1129 I 1129


>gi|357151708|ref|XP_003575878.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Brachypodium distachyon]
          Length = 676

 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 153/341 (44%), Gaps = 4/341 (1%)

Query: 218 LQPSRIDWINLLDRLREQN-TQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L+P+     +L++ L +   T+  F++   ++   S++ NV  Y+ +I  + KE  L  A
Sbjct: 286 LKPNVYTHTSLINGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCKEGKLARA 345

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
           E +L +M E G+ P+  T T L+  + K G+ + A E    +R  GFQP+   YN++I  
Sbjct: 346 EMLLGRMVEQGLAPNTNTYTTLISGHCKEGSFNCAFELMNKMRREGFQPNIYTYNALIDG 405

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
               G+ +    ++ M    G++  +  Y  ++    + G +  A  + N M      P 
Sbjct: 406 LCKKGKIQEAYKVLRMANNQGLQLDKVTYTVMITEHCKQGHITYALDLFNRMAENGCHPD 465

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           + + T L+  Y Q    ++++  FD  + +   P  +   SMIA Y K      AL +  
Sbjct: 466 IHTYTTLIARYCQQRQMEESQKLFDKCLAIELVPTKQTYTSMIAGYCKVGKSTSALRVFE 525

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
            + ++G +    TY  L+  L +   + EA  L   + +    P     V+L   Y R  
Sbjct: 526 RMVQNGCQADSITYGALISGLCKESRLEEARALYEGMLDKRLVPCEVTPVTLAFEYCR-- 583

Query: 517 IEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQ 557
             +KA+ A+  L+   ++        ++  L A G ++DA 
Sbjct: 584 -REKAVVAVSILDRLDKRRKNHTVNVLVRKLSAIGHVEDAS 623



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/333 (21%), Positives = 141/333 (42%), Gaps = 2/333 (0%)

Query: 238 QLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTV 297
           +LY   A   +   S         +++ A A+   L +A  ++ +M  +G+   + T+  
Sbjct: 95  RLYVTAATTFVDRGSLPMAHEAMRRMVAAFAEAGRLPEAADMVFEMRSHGLPFCVETANW 154

Query: 298 LVHMYSKAGNLDRAKEAFESLRSHG-FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           ++      G+   A++ F+ + + G   PD + + ++I+     G+ +   +L+ +M   
Sbjct: 155 VLRAGLDTGSFAYARKVFDGMVTRGGLLPDARSFRALIVGCCRDGRMEEVDALLTVMQGQ 214

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
           G          ++R F Q G  R   ++   M      P + + T  ++   +     QA
Sbjct: 215 GFCLDNATCTVIVRVFCQKGRFRDVSELFRRMLEMGTPPNVVNYTAWIDGLCKRAYVKQA 274

Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG-FEPGPATYTVLVD 475
               + M+  G KP+     S+I    K    ++A  L L+L K   ++P   TYTV++ 
Sbjct: 275 FYVLEEMVAKGLKPNVYTHTSLINGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIG 334

Query: 476 WLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQM 535
              +   +  AE LLG++ E G AP      +L   + + G    A + +  +  +  Q 
Sbjct: 335 GYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLISGHCKEGSFNCAFELMNKMRREGFQP 394

Query: 536 GPDDFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
               +  +I+GL   G +Q+A +V  +   QG 
Sbjct: 395 NIYTYNALIDGLCKKGKIQEAYKVLRMANNQGL 427



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 58/287 (20%), Positives = 107/287 (37%), Gaps = 35/287 (12%)

Query: 298 LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMIT-S 356
           +V  +++AG L  A +    +RSHG     +  N ++ A ++ G       + D M+T  
Sbjct: 120 MVAAFAEAGRLPEAADMVFEMRSHGLPFCVETANWVLRAGLDTGSFAYARKVFDGMVTRG 179

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
           G+      + AL+    + G +     +  +M+ + F     +CT++V  + Q G     
Sbjct: 180 GLLPDARSFRALIVGCCRDGRMEEVDALLTVMQGQGFCLDNATCTVIVRVFCQKGRFRDV 239

Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476
              F  M+ +G  P+     + I    K+  + +A  +L E+   G +P   T+T L++ 
Sbjct: 240 SELFRRMLEMGTPPNVVNYTAWIDGLCKRAYVKQAFYVLEEMVAKGLKPNVYTHTSLING 299

Query: 477 LGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG 536
           L ++     A +L  K+ +     P                                   
Sbjct: 300 LCKIGWTERAFRLFLKLIKSSSYKP----------------------------------N 325

Query: 537 PDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQT 583
              +  +I G    G L  A+ + G M  QG A +      LIS   
Sbjct: 326 VHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLISGHC 372


>gi|115451769|ref|NP_001049485.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|108707037|gb|ABF94832.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113547956|dbj|BAF11399.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|125585525|gb|EAZ26189.1| hypothetical protein OsJ_10058 [Oryza sativa Japonica Group]
 gi|215706461|dbj|BAG93317.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 641

 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 141/313 (45%), Gaps = 20/313 (6%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF---- 315
           +S L D +AK   ++DA R+  +M     V D V+ T +V  Y   G   R  E F    
Sbjct: 205 WSALADMYAKCGRVDDARRVFDRMP----VRDAVSWTAMVERYFDGG---RGGEGFRLFL 257

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             LR+ G +P++  Y  ++ A         G  +   M  SG   S     ALLR +++C
Sbjct: 258 HMLRTRGVRPNEFTYAGVLRACAQFAVESFGRQVHGRMAKSGTGDSCFAESALLRMYSKC 317

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           GD+  A ++   M     +P L S T ++  Y Q G P++A   FD  +R G KPD    
Sbjct: 318 GDMGSAVRVFEAMA----KPDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIKPDHVTF 373

Query: 436 ASMIAAYGKKNLLDKALNLLLEL-EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
             +++A     L+DK L +   + E+   E     Y  ++D L R      AE+++G ++
Sbjct: 374 VGVLSACAHAGLVDKGLEIFHSIKEQYCIEHTADHYACVIDLLSRSGQFERAEKMIGNMA 433

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQ 554
                  +   +  C ++   G+ ++A +AL  +E +     P  +  + N   + G   
Sbjct: 434 VKPNKFLWASLLGGCRIHKNVGLARRAAEALFEIEPEN----PATYVTLANIYASVGLFD 489

Query: 555 DAQRVHGLMEAQG 567
           + + V  +ME++G
Sbjct: 490 EVEDVRRIMESKG 502



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/254 (22%), Positives = 113/254 (44%), Gaps = 17/254 (6%)

Query: 241 FKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
           F++   +L     + N   Y+ ++ A A+        ++  +M ++G        + L+ 
Sbjct: 253 FRLFLHMLRTRGVRPNEFTYAGVLRACAQFAVESFGRQVHGRMAKSGTGDSCFAESALLR 312

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
           MYSK G++  A   FE++     +PD   + ++I  Y   GQP+  +   DM + SGI+ 
Sbjct: 313 MYSKCGDMGSAVRVFEAMA----KPDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIKP 368

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF--QPTLESCTLLVEAYGQAGDPDQARS 418
               ++ +L + A  G V    +I + ++ E++  + T +    +++   ++G  ++A  
Sbjct: 369 DHVTFVGVLSACAHAGLVDKGLEIFHSIK-EQYCIEHTADHYACVIDLLSRSGQFERAEK 427

Query: 419 NFDYMIRLGHKPDDRCTASMIAA---YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
               M     KP+    AS++     +    L  +A   L E+E +     PATY  L +
Sbjct: 428 MIGNM---AVKPNKFLWASLLGGCRIHKNVGLARRAAEALFEIEPE----NPATYVTLAN 480

Query: 476 WLGRLQLINEAEQL 489
               + L +E E +
Sbjct: 481 IYASVGLFDEVEDV 494


>gi|293335157|ref|NP_001169529.1| uncharacterized protein LOC100383403 [Zea mays]
 gi|224029903|gb|ACN34027.1| unknown [Zea mays]
 gi|414887232|tpg|DAA63246.1| TPA: hypothetical protein ZEAMMB73_160132 [Zea mays]
          Length = 819

 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 110/217 (50%), Gaps = 2/217 (0%)

Query: 283 MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSH--GFQPDKKVYNSMIMAYVNA 340
           M  + + PD  T  +++H   K G    A E F S+R       PD   Y S++ +Y   
Sbjct: 284 MKSSKVAPDTCTMNIVIHCLVKIGLYGEAIELFNSMRERRTTCHPDVVTYTSIMYSYSVC 343

Query: 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
           GQ +   ++ D+M+  G+  +   Y ALL ++A  G    A +   +++    +P + S 
Sbjct: 344 GQAENCKAVFDIMVAEGVRPNIVSYNALLGAYASHGMHTEALETFKLLKQNGLRPDIVSY 403

Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
           T L+ AYG++  P++AR  F+ M +   KP+     ++I AYG   +L +A++LL E+E+
Sbjct: 404 TSLLNAYGRSAQPEKAREVFNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQ 463

Query: 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           DG +P   + + L+   GR + + + + +L      G
Sbjct: 464 DGIQPDVISISTLLTACGRCKQLTKIDIILAAAKSRG 500



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/334 (22%), Positives = 147/334 (44%), Gaps = 35/334 (10%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++  E  + N+  Y+ L+ A+A      +A    K + +NG+ PDIV+ T L++ Y ++ 
Sbjct: 355 IMVAEGVRPNIVSYNALLGAYASHGMHTEALETFKLLKQNGLRPDIVSYTSLLNAYGRSA 414

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL----------------- 349
             ++A+E F  +R +  +P+K  YN++I AY +AG  K  +SL                 
Sbjct: 415 QPEKAREVFNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPDVISIS 474

Query: 350 --------------VDMMITS----GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391
                         +D+++ +    GI+ +   Y + + S+   GD + A  +   MR  
Sbjct: 475 TLLTACGRCKQLTKIDIILAAAKSRGIQLNTVAYNSGIGSYLSLGDYKKALVLYTSMRAG 534

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
             +P   +  +L+    + G   ++   F+ M+ L         +S+I +Y K+  L +A
Sbjct: 535 NVKPDAVTYNILISGSCKLGRYVESLKFFEDMLDLNIHLTKEVYSSVICSYVKQGKLTEA 594

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
            +    +++ G  P   TYT L+           A  L  ++   G  P   +  SL + 
Sbjct: 595 ASTFNSMKETGCFPDVLTYTTLIKAYSDDGSWRRAWDLFKEMENNGTQPDAIVCSSLMEA 654

Query: 512 YARAGIEKKALQALGFLEAKKEQMGPDDFERIIN 545
             + G  ++ LQ + F++ KK Q+    +  II+
Sbjct: 655 LNKGGQPERVLQLIEFMKQKKIQLNQKAYFEIIS 688



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 116/251 (46%), Gaps = 24/251 (9%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS +I ++ K+  L +A      M E G  PD++T T L+  YS  G+  RA + F+ + 
Sbjct: 578 YSSVICSYVKQGKLTEAASTFNSMKETGCFPDVLTYTTLIKAYSDDGSWRRAWDLFKEME 637

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           ++G QPD  V +S++ A    GQP+  + L++ M    I+ +++ Y  ++ S     D +
Sbjct: 638 NNGTQPDAIVCSSLMEALNKGGQPERVLQLIEFMKQKKIQLNQKAYFEIISSCTMLRDWK 697

Query: 380 GAGQITNIMRIEEFQPTLESCTL-----LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
            A QI     IE    +L S +      ++   G+ G  +        M++L +K    C
Sbjct: 698 TASQI-----IEHLDSSLSSISFGTLNHILNFLGKCGRTES-------MMKLFYKMVTSC 745

Query: 435 TASMIAAYGK--KNLL-----DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
           +   ++ Y    +NLL      K + +L  +E  G  P    Y  ++ ++ R   ++   
Sbjct: 746 STVGLSTYTILLRNLLIVGKWRKYVEVLQWMEDAGVCPTLYMYQSVLPYIWRDNSMDYVT 805

Query: 488 QLLGKISELGE 498
            +  KI+ L E
Sbjct: 806 LMQEKINALRE 816



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 69/327 (21%), Positives = 133/327 (40%), Gaps = 39/327 (11%)

Query: 249 SEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNL 308
           ++E++      Y  +I  HA+ N ++ A  +  +M E    P+  T   L+H +++AG  
Sbjct: 145 NQENYCARNDIYGMMIRLHARHNKVDQARGLFFEMQEWRCKPNTDTYNSLIHAHARAGQW 204

Query: 309 DRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLAL 368
             A    + ++     P +  YN++I A   AG  K  + L   M  +G+      +  +
Sbjct: 205 CWAINIMDDMQRAAIPPSRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLITHNIV 264

Query: 369 LRSFAQCGDVRGAGQITNIMR---------------------------IEEF-------- 393
           L +F        A     IM+                           IE F        
Sbjct: 265 LSAFKNGAQYSKAIAYFEIMKSSKVAPDTCTMNIVIHCLVKIGLYGEAIELFNSMRERRT 324

Query: 394 --QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
              P + + T ++ +Y   G  +  ++ FD M+  G +P+     +++ AY    +  +A
Sbjct: 325 TCHPDVVTYTSIMYSYSVCGQAENCKAVFDIMVAEGVRPNIVSYNALLGAYASHGMHTEA 384

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
           L     L+++G  P   +YT L++  GR     +A ++  ++ +    P      +L D 
Sbjct: 385 LETFKLLKQNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNEMRKNACKPNKVSYNALIDA 444

Query: 512 YARAGIEKKALQALGFLEAKKEQMGPD 538
           Y  AG+ K+A+  L   E +++ + PD
Sbjct: 445 YGSAGMLKEAISLLH--EMEQDGIQPD 469



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 62/289 (21%), Positives = 121/289 (41%), Gaps = 42/289 (14%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVL--------- 298
           + + + + N   Y+ LIDA+     L++A  +L +M ++GI PD+++ + L         
Sbjct: 426 MRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPDVISISTLLTACGRCKQ 485

Query: 299 --------------------------VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
                                     +  Y   G+  +A   + S+R+   +PD   YN 
Sbjct: 486 LTKIDIILAAAKSRGIQLNTVAYNSGIGSYLSLGDYKKALVLYTSMRAGNVKPDAVTYNI 545

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I      G+    +   + M+   I  ++E+Y +++ S+ + G +  A    N M+   
Sbjct: 546 LISGSCKLGRYVESLKFFEDMLDLNIHLTKEVYSSVICSYVKQGKLTEAASTFNSMKETG 605

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P + + T L++AY   G   +A   F  M   G +PD    +S++ A  K    ++ L
Sbjct: 606 CFPDVLTYTTLIKAYSDDGSWRRAWDLFKEMENNGTQPDAIVCSSLMEALNKGGQPERVL 665

Query: 453 NLL-------LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
            L+       ++L +  +    ++ T+L DW    Q+I   +  L  IS
Sbjct: 666 QLIEFMKQKKIQLNQKAYFEIISSCTMLRDWKTASQIIEHLDSSLSSIS 714



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/250 (21%), Positives = 107/250 (42%), Gaps = 14/250 (5%)

Query: 226 INLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNE 285
           I L + +RE+ T              +   +V  Y+ ++ +++     E+ + +   M  
Sbjct: 313 IELFNSMRERRT--------------TCHPDVVTYTSIMYSYSVCGQAENCKAVFDIMVA 358

Query: 286 NGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKL 345
            G+ P+IV+   L+  Y+  G    A E F+ L+ +G +PD   Y S++ AY  + QP+ 
Sbjct: 359 EGVRPNIVSYNALLGAYASHGMHTEALETFKLLKQNGLRPDIVSYTSLLNAYGRSAQPEK 418

Query: 346 GMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVE 405
              + + M  +  + ++  Y AL+ ++   G ++ A  + + M  +  QP + S + L+ 
Sbjct: 419 AREVFNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPDVISISTLLT 478

Query: 406 AYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
           A G+     +           G + +     S I +Y       KAL L   +     +P
Sbjct: 479 ACGRCKQLTKIDIILAAAKSRGIQLNTVAYNSGIGSYLSLGDYKKALVLYTSMRAGNVKP 538

Query: 466 GPATYTVLVD 475
              TY +L+ 
Sbjct: 539 DAVTYNILIS 548


>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
 gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 125/256 (48%), Gaps = 2/256 (0%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E     ++  Y+ LI    K    + A ++L  + ENG+VPD  T +V +    K+  ++
Sbjct: 452 ESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRME 511

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A + F SL+  G + ++ +Y ++I  +  AG+    +SL++ M +     +   Y +L+
Sbjct: 512 EACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLI 571

Query: 370 RSFAQCGDVR-GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH 428
               + G V+ G   + N+ ++   +PT+ + T+L+E   + GD D A   F+ M+  GH
Sbjct: 572 YGVCKEGKVQEGLSMVENMSKMG-VKPTVATYTILIEEMLREGDFDHANRVFNQMVSFGH 630

Query: 429 KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQ 488
           KPD     + I  Y     + +A  ++  + + G  P   TYT+L+    RL L  +A  
Sbjct: 631 KPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAGVMPDSLTYTLLISAYERLGLAYDAFN 690

Query: 489 LLGKISELGEAPPFKI 504
           +L ++ + G  P   I
Sbjct: 691 VLKRMLDAGCDPSHPI 706



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/358 (23%), Positives = 155/358 (43%), Gaps = 52/358 (14%)

Query: 228 LLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENG 287
           LLD LR+ N            ++  F+ +VR Y++L+   A+   +++ +R+  +M  + 
Sbjct: 159 LLDFLRQMNRDD---------NDIKFKLSVRSYNELLMMLARFLMIDEMKRVYTEMLNDM 209

Query: 288 IVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGM 347
           IVP+I T   +V+ YSK GN+  A      +   G  PD   Y S+I+ Y          
Sbjct: 210 IVPNIYTLNTMVNAYSKMGNIVEANLYVSKIFQAGLSPDSFTYTSLILGYCRNNDVNSAY 269

Query: 348 SLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA- 406
            + +MM   G  R+E  Y  ++    + G +     +   MR ++  PT+ + T+++ A 
Sbjct: 270 KVFNMMPNKGCRRNEVSYTTIIHGLCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHAL 329

Query: 407 YGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG 466
           +G                      +DR            NL  + ++L  E+ +   EP 
Sbjct: 330 FG----------------------NDR------------NL--EGMDLFNEMRERSCEPN 353

Query: 467 PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALG 526
             TYTV+VD + + + ++E+ ++L ++ E G  P      +L   Y   G  + AL+ LG
Sbjct: 354 VHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILG 413

Query: 527 FLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTF 584
            +E+   +  P+  ER  N L+ G      + VH  M         +L  +L++  + 
Sbjct: 414 LMESNNCR--PN--ERTYNELICG--FSKRKHVHKAMTLLSKMLESKLTPSLVTYNSL 465



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 138/309 (44%), Gaps = 35/309 (11%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E S + NV  Y+ ++DA  KE  L+++ RIL +M E G+VP +VT   L+  Y + G 
Sbjct: 345 MRERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGR 404

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           ++ A E    + S+  +P+++ YN +I  +         M+L+  M+ S +  S   Y +
Sbjct: 405 IEAALEILGLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNS 464

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQP----------TL-------ESC---------- 400
           L+    + G    A ++ ++++     P          TL       E+C          
Sbjct: 465 LIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKG 524

Query: 401 --------TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
                   T L++ + +AG  D+A S  + M      P+     S+I    K+  + + L
Sbjct: 525 IKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGL 584

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
           +++  + K G +P  ATYT+L++ + R    + A ++  ++   G  P      +    Y
Sbjct: 585 SMVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTY 644

Query: 513 ARAGIEKKA 521
             +G  K+A
Sbjct: 645 CTSGNVKEA 653



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 116/260 (44%), Gaps = 3/260 (1%)

Query: 218 LQPSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L PS + + +L+  + +  +    +K+ +L L E     +   YS  ID   K   +E+A
Sbjct: 455 LTPSLVTYNSLIHVQCKAGHFDSAYKLLDL-LKENGLVPDQWTYSVFIDTLCKSKRMEEA 513

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
             +   + E GI  + V  T L+  + KAG +D A    E + S    P+   YNS+I  
Sbjct: 514 CDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYG 573

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
               G+ + G+S+V+ M   G++ +   Y  L+    + GD   A ++ N M     +P 
Sbjct: 574 VCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPD 633

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           + + T  +  Y  +G+  +A      MI  G  PD      +I+AY +  L   A N+L 
Sbjct: 634 VYTYTAFIHTYCTSGNVKEAEGMMARMIEAGVMPDSLTYTLLISAYERLGLAYDAFNVLK 693

Query: 457 ELEKDGFEPGPATYTVLVDW 476
            +   G +P    +  L+ W
Sbjct: 694 RMLDAGCDPSHPIWNNLI-W 712



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/335 (22%), Positives = 134/335 (40%), Gaps = 2/335 (0%)

Query: 248 LSEESFQTNVRDYSKLIDA-HAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           + E+     VR Y+ +I A    +  LE  + +  +M E    P++ T TV+V    K  
Sbjct: 310 MREDDCYPTVRTYTVIIHALFGNDRNLEGMD-LFNEMRERSCEPNVHTYTVMVDAMCKER 368

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            LD ++     +   G  P    YN++I  Y   G+ +  + ++ +M ++    +E  Y 
Sbjct: 369 KLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYN 428

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+  F++   V  A  + + M   +  P+L +   L+    +AG  D A    D +   
Sbjct: 429 ELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKEN 488

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G  PD    +  I    K   +++A +L   L++ G +     YT L+D   +   I+EA
Sbjct: 489 GLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEA 548

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
             LL ++      P      SL     + G  ++ L  +  +     +     +  +I  
Sbjct: 549 ISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEE 608

Query: 547 LLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
           +L  G    A RV   M + G         A I +
Sbjct: 609 MLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHT 643



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 74/344 (21%), Positives = 137/344 (39%), Gaps = 44/344 (12%)

Query: 242 KVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM 301
           K+ +  LS +SF      Y+ LI  + + N +  A ++   M   G   + V+ T ++H 
Sbjct: 239 KIFQAGLSPDSFT-----YTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHG 293

Query: 302 YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS 361
             +AG +D     F+ +R     P  + Y  +I A     +   GM L            
Sbjct: 294 LCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMDLF----------- 342

Query: 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421
                                   N MR    +P + + T++V+A  +    D++R   +
Sbjct: 343 ------------------------NEMRERSCEPNVHTYTVMVDAMCKERKLDESRRILN 378

Query: 422 YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ 481
            M+  G  P      ++I  Y ++  ++ AL +L  +E +   P   TY  L+    + +
Sbjct: 379 EMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELICGFSKRK 438

Query: 482 LINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--D 539
            +++A  LL K+ E    P      SL  +  +AG    A + L  L  K+  + PD   
Sbjct: 439 HVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLL--KENGLVPDQWT 496

Query: 540 FERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQT 583
           +   I+ L     +++A  +   ++ +G  A+E +  ALI    
Sbjct: 497 YSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHC 540


>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1246

 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 150/350 (42%), Gaps = 41/350 (11%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  Y+  I A  +   ++DA  I K+M++ G  PD++T TVL+     AG LD+AKE +
Sbjct: 269 NIYTYTICIRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELY 328

Query: 316 ESLR--SH---------------------------------GFQPDKKVYNSMIMAYVNA 340
             +R  SH                                 G+ PD   Y  +I A   +
Sbjct: 329 VKMRASSHSPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKS 388

Query: 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
           G       ++D+M T GI  +   Y  ++    +   +  A ++   M     +PT  S 
Sbjct: 389 GDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLGVKPTAFSY 448

Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPD-DRCTASM--IAAYGKKNLLDKALNLLLE 457
            L ++ YG++GDP +A   F+ M + G  P    C AS+  +A  G+   + +A ++  +
Sbjct: 449 VLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGR---ISEAEDIFND 505

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI 517
           L K G  P   TY +L+    +   I++A QLL ++   G  P   I  SL +   +AG 
Sbjct: 506 LHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGR 565

Query: 518 EKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
              A +  G L+  K       +  ++ GL   G +  A  + G M   G
Sbjct: 566 VDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALELFGSMTESG 615



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 124/270 (45%)

Query: 256  NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
            N   Y+ L+DAH K   +     +  +M   G  P+ +T  +++    K+ NL++A + +
Sbjct: 830  NNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLY 889

Query: 316  ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
              L S  F P    Y  +I   + AG+ +  M + + M+  G   +  IY  L+  F + 
Sbjct: 890  YELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKS 949

Query: 376  GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
            G++  A ++   M  E  +P L+S T+LVE     G  D+A   F+ +   G  PD    
Sbjct: 950  GEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSY 1009

Query: 436  ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
              +I   GK   LD+AL+L  E++  G  P   TY  L+  LG    ++ A ++  ++  
Sbjct: 1010 NFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQL 1069

Query: 496  LGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
            +G  P      +L   ++ +G + +A    
Sbjct: 1070 VGLEPSVFTYNALIRGHSLSGNKDQAFSVF 1099



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 153/375 (40%), Gaps = 51/375 (13%)

Query: 220 PSRIDWINLLDRL-----REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           P  I +  L+D L      ++  +LY K     +   S   +   Y  L+D   K   LE
Sbjct: 303 PDVITYTVLIDALCAAGKLDKAKELYVK-----MRASSHSPDRVTYITLMDKFGKVGDLE 357

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
             +R   +M  +G  PD+VT T+L+    K+G++DRA +  + + + G  P+   YN+MI
Sbjct: 358 TVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMI 417

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
              + A +    + L++ M + G++ +   Y+  +  + + GD   A      M+     
Sbjct: 418 CGLLKARRLDEALELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIM 477

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P++ +C   +    + G   +A   F+ + + G  PD      ++  Y K   +DKA  L
Sbjct: 478 PSIAACNASLYTLAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQL 537

Query: 455 LLELEKDGFEP---------------------------------GPA--TYTVLVDWLGR 479
           L E+   G EP                                  P   TY +L+  LG+
Sbjct: 538 LSEMISKGCEPDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGK 597

Query: 480 LQLINEAEQLLGKISELGEAPPFKIQV-SLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
              I +A +L G ++E G  PP  I   SL D  ++      AL+   F         PD
Sbjct: 598 EGKILKALELFGSMTESG-CPPNTITFNSLLDCLSKNDAVDLALKM--FCRMTMMNCNPD 654

Query: 539 --DFERIINGLLAGG 551
              +  II GL+  G
Sbjct: 655 VLTYNTIIYGLIREG 669



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 143/310 (46%), Gaps = 16/310 (5%)

Query: 201 LEKEEDPSPLLAEWKELLQPSRI----DWIN-LLDRLREQNTQLYFKVAELVLSEESFQT 255
           L+   DP+   + +K + Q +      D  N +L+ LREQ      ++ ++V   +  Q 
Sbjct: 105 LKSISDPNSAFSYFKIVSQLTNFVHTTDACNYMLEILREQR-----RIEDMVFVFDLMQK 159

Query: 256 -----NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
                N+  Y  +  A + +  +  A   L+KM E G + +  +   L+H+    G  + 
Sbjct: 160 KVIYRNLTTYMTIFKALSIKGGIGRAPFALRKMTEVGFILNAYSYNGLIHLL-LPGFCNE 218

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A + ++ + S G +P  K Y+++++A    G  +  M+L++ M + G+  +   Y   +R
Sbjct: 219 ALKVYKRMISEGMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTYTICIR 278

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
           +  +   +  A  I   M  E   P + + T+L++A   AG  D+A+  +  M    H P
Sbjct: 279 ALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRASSHSP 338

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           D     +++  +GK   L+       E+E DG+ P   TYT+L++ L +   ++ A  +L
Sbjct: 339 DRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFDML 398

Query: 491 GKISELGEAP 500
             ++  G  P
Sbjct: 399 DVMTTKGIFP 408



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 88/189 (46%)

Query: 260  YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
            Y+ LI+   K   ++ A  + KKM + GI PD+ + T+LV      G +D A + FE L+
Sbjct: 939  YNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELK 998

Query: 320  SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
              G  PD   YN +I     + +    +SL   M   GI      Y AL+      G V 
Sbjct: 999  LTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVD 1058

Query: 380  GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
             A ++   +++   +P++ +   L+  +  +G+ DQA S F  M+ +G  P+    A + 
Sbjct: 1059 VAVKMYEELQLVGLEPSVFTYNALIRGHSLSGNKDQAFSVFKKMMVVGCSPNTETFAQLP 1118

Query: 440  AAYGKKNLL 448
              Y +  L+
Sbjct: 1119 NKYPRAGLV 1127



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 77/343 (22%), Positives = 141/343 (41%), Gaps = 5/343 (1%)

Query: 226 INLLDRLREQNTQL-YFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMN 284
           + +L  + + N+   YFK+    L+     T+  +Y  +++   ++  +ED   +   M 
Sbjct: 102 MTILKSISDPNSAFSYFKIVS-QLTNFVHTTDACNY--MLEILREQRRIEDMVFVFDLMQ 158

Query: 285 ENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPK 344
           +  I  ++ T   +    S  G + RA  A   +   GF  +   YN +I   +  G   
Sbjct: 159 KKVIYRNLTTYMTIFKALSIKGGIGRAPFALRKMTEVGFILNAYSYNGLIHLLL-PGFCN 217

Query: 345 LGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
             + +   MI+ G++ S + Y AL+ +  + GD R    +   M+    +P + + T+ +
Sbjct: 218 EALKVYKRMISEGMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTYTICI 277

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
            A G+A   D A   F  M   G  PD      +I A      LDKA  L +++      
Sbjct: 278 RALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRASSHS 337

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQA 524
           P   TY  L+D  G++  +   ++   ++   G AP       L +   ++G   +A   
Sbjct: 338 PDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFDM 397

Query: 525 LGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
           L  +  K        +  +I GLL    L +A  +   ME+ G
Sbjct: 398 LDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLG 440



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 142/321 (44%), Gaps = 13/321 (4%)

Query: 275  DAERILKKMNEN-GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
            DA+ +  K  +N GI P + +   L+     +   ++A E FE ++S G  P+   YN +
Sbjct: 778  DAQNVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLL 837

Query: 334  IMAYVNAGQPKLGMSLVDM---MITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRI 390
            + A+   G+ K    L D+   M + G E +   +  ++ +  +  ++  A  +   +  
Sbjct: 838  LDAH---GKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMS 894

Query: 391  EEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDK 450
             +F PT  +   L++   +AG  +QA   F+ M+  G  P+      +I  +GK   +D 
Sbjct: 895  GDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDF 954

Query: 451  ALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCD 510
            A  L  ++ K+G  P   +YT+LV+ L     I+EA Q   ++   G  P     VS   
Sbjct: 955  ACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPD---TVSYNF 1011

Query: 511  MYARAGIEKKALQALG-FLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQG 567
            +    G  ++  +AL  F E K   + PD   +  +I  L   G +  A +++  ++  G
Sbjct: 1012 IINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVG 1071

Query: 568  FAASERLKVALISSQTFNRQR 588
               S     ALI   + +  +
Sbjct: 1072 LEPSVFTYNALIRGHSLSGNK 1092



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 105/266 (39%), Gaps = 35/266 (13%)

Query: 260  YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
            Y  LID   K    E A +I ++M + G  P+ V   +L++ + K+G +D A E F+ + 
Sbjct: 904  YGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMV 963

Query: 320  SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
              G +PD K Y  ++      G+           I   ++  EE                
Sbjct: 964  KEGIRPDLKSYTILVECLCITGR-----------IDEAVQYFEE---------------- 996

Query: 380  GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
                    +++    P   S   ++   G++   D+A S F  M   G  PD     ++I
Sbjct: 997  --------LKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALI 1048

Query: 440  AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
               G    +D A+ +  EL+  G EP   TY  L+         ++A  +  K+  +G +
Sbjct: 1049 LHLGIAGKVDVAVKMYEELQLVGLEPSVFTYNALIRGHSLSGNKDQAFSVFKKMMVVGCS 1108

Query: 500  PPFKIQVSLCDMYARAGIEKKALQAL 525
            P  +    L + Y RAG+      A+
Sbjct: 1109 PNTETFAQLPNKYPRAGLVHNPFGAV 1134



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 79/164 (48%)

Query: 248  LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
            + +E  + +++ Y+ L++       +++A +  +++   G+ PD V+   +++   K+  
Sbjct: 962  MVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRR 1021

Query: 308  LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            LD A   F  +++ G  PD   YN++I+    AG+  + + + + +   G+E S   Y A
Sbjct: 1022 LDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGLEPSVFTYNA 1081

Query: 368  LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAG 411
            L+R  +  G+   A  +   M +    P  E+   L   Y +AG
Sbjct: 1082 LIRGHSLSGNKDQAFSVFKKMMVVGCSPNTETFAQLPNKYPRAG 1125



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 72/386 (18%), Positives = 155/386 (40%), Gaps = 52/386 (13%)

Query: 212 AEWKEL-------LQPSRIDWINLLDRLREQNTQLYFKVAELV--LSEESFQTNVRDYSK 262
           A WK         L P+ + +  LL  L ++   L  K  EL   ++E     N   ++ 
Sbjct: 568 AAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKIL--KALELFGSMTESGCPPNTITFNS 625

Query: 263 LIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS-- 320
           L+D  +K + ++ A ++  +M      PD++T   +++   + G +D A   F  ++   
Sbjct: 626 LLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIREGRIDYAFWFFHQMKKFL 685

Query: 321 ----------------HG-----------------FQPDKKVYNSMIMAYVNAGQPKLGM 347
                           HG                  Q + + +  ++   +   + +  +
Sbjct: 686 SPDYVTLCTLIPGVVRHGRVEDAIKVVMEFVHQACLQTNSQFWGELMECILTEAEIEEAI 745

Query: 348 SLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITN-IMRIEEFQPTLESCTLLVEA 406
           S  ++++ + + + + + L L++   +      A  + +   +     PTLES   L++ 
Sbjct: 746 SFAEILVCNSVCQDDHVMLPLIKVLCKRKKALDAQNVFDKFTKNLGIHPTLESYNCLMDG 805

Query: 407 YGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG 466
              +   ++A   F+ M   G  P++     ++ A+GK   ++K  +L  E+   G EP 
Sbjct: 806 LLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPN 865

Query: 467 PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALG 526
             T+ +++  L +   +N+A  L  ++     +P       L D   +AG  ++A++   
Sbjct: 866 AITHNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKI-- 923

Query: 527 FLEAKKEQMGPDDFERIINGLLAGGF 552
           F E      GP+    +I  +L  GF
Sbjct: 924 FEEMLDYGCGPNS---VIYNILINGF 946


>gi|297807255|ref|XP_002871511.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297317348|gb|EFH47770.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1202

 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 89/374 (23%), Positives = 168/374 (44%), Gaps = 4/374 (1%)

Query: 218 LQPSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L PS I +  L+D   ++ N +  FKV E  +  ++ + ++  ++ L+    K   +EDA
Sbjct: 618 LLPSLITYNTLIDGYCKDGNPEKSFKVRER-MKADNIEPSLITFNTLLKGLFKAGMVEDA 676

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
           E +L +M + G VPD  T ++L   YS     D A   +E+    G + +    + ++ A
Sbjct: 677 ENVLTEMKDQGFVPDAFTFSILFDGYSSNDKADAALGVYETAVDSGLKMNAYTCSILLNA 736

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
               GQ +    ++   +  G+  +E +Y  ++  +++ GD+ GA    + M  +  +P 
Sbjct: 737 LCKEGQIEKAEEILGREMAKGLVPNEVLYNTMIDGYSRKGDLVGARMKIDAMEKQGMKPD 796

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
             +   L+  + + GD + A    + M   G  P       +I  YG+K   DK  +LL 
Sbjct: 797 HLAYNCLIRTFCELGDMENAEQEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDLLK 856

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
           E+E +G  P   +Y  L++ L +   + EA+ +   + + G +P  +I   L D     G
Sbjct: 857 EMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPNVRIYNMLIDGCCSKG 916

Query: 517 IEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKV 576
             + A +    +  K  ++    +  +I+GL   G L +A+ +   +  +G         
Sbjct: 917 KIEDAFRFSEEMFKKGIELNLVTYNTLIDGLSMNGKLAEAEDMLLEISRKGLKPDVFTYN 976

Query: 577 ALISSQTF--NRQR 588
           +LIS   F  N QR
Sbjct: 977 SLISGYRFAGNVQR 990



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 132/320 (41%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LID   K   ++DAE++  +M    ++P ++T   L+  Y K GN +++ +  E ++
Sbjct: 590 YNVLIDGLCKVRQMKDAEQLFDEMLARRLLPSLITYNTLIDGYCKDGNPEKSFKVRERMK 649

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           +   +P    +N+++     AG  +   +++  M   G       +  L   ++      
Sbjct: 650 ADNIEPSLITFNTLLKGLFKAGMVEDAENVLTEMKDQGFVPDAFTFSILFDGYSSNDKAD 709

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  +         +    +C++L+ A  + G  ++A       +  G  P++    +MI
Sbjct: 710 AALGVYETAVDSGLKMNAYTCSILLNALCKEGQIEKAEEILGREMAKGLVPNEVLYNTMI 769

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             Y +K  L  A   +  +EK G +P    Y  L+     L  +  AEQ + K+   G +
Sbjct: 770 DGYSRKGDLVGARMKIDAMEKQGMKPDHLAYNCLIRTFCELGDMENAEQEVNKMKLKGVS 829

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P  +    L   Y R     K    L  +E          +  +IN L  G  L +AQ V
Sbjct: 830 PSVETYNILIGGYGRKYEFDKCFDLLKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIV 889

Query: 560 HGLMEAQGFAASERLKVALI 579
              ME +G + + R+   LI
Sbjct: 890 KRDMEDRGVSPNVRIYNMLI 909



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 117/255 (45%), Gaps = 4/255 (1%)

Query: 220  PSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERI 279
            P+ + +  L++ L + +  L  ++ +  + +     NVR Y+ LID    +  +EDA R 
Sbjct: 865  PNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPNVRIYNMLIDGCCSKGKIEDAFRF 924

Query: 280  LKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339
             ++M + GI  ++VT   L+   S  G L  A++    +   G +PD   YNS+I  Y  
Sbjct: 925  SEEMFKKGIELNLVTYNTLIDGLSMNGKLAEAEDMLLEISRKGLKPDVFTYNSLISGYRF 984

Query: 340  AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLES 399
            AG  +  ++L + M TSGI+ + + Y  LL S      +    +I   M +   QP L  
Sbjct: 985  AGNVQRCIALYEEMKTSGIKPTLKTY-HLLISLCTKEGIELTKKIFGEMSL---QPDLLV 1040

Query: 400  CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELE 459
               ++  Y   GD D+A +    MI      D     S+I    K   L +  +L+ E++
Sbjct: 1041 YNGVLHCYAVHGDMDKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMK 1100

Query: 460  KDGFEPGPATYTVLV 474
                EP   TY ++V
Sbjct: 1101 AREMEPEADTYDIIV 1115



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 67/304 (22%), Positives = 118/304 (38%), Gaps = 35/304 (11%)

Query: 250  EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
            +   + N    S L++A  KE  +E AE IL +    G+VP+ V    ++  YS+ G+L 
Sbjct: 720  DSGLKMNAYTCSILLNALCKEGQIEKAEEILGREMAKGLVPNEVLYNTMIDGYSRKGDLV 779

Query: 310  RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
             A+   +++   G +PD   YN +I  +   G  +     V+ M   G+  S E Y  L+
Sbjct: 780  GARMKIDAMEKQGMKPDHLAYNCLIRTFCELGDMENAEQEVNKMKLKGVSPSVETYNILI 839

Query: 370  ------RSFAQCGD-------------VRGAGQITNIM----RIEEFQ------------ 394
                    F +C D             V   G + N +    ++ E Q            
Sbjct: 840  GGYGRKYEFDKCFDLLKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVS 899

Query: 395  PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
            P +    +L++     G  + A    + M + G + +     ++I        L +A ++
Sbjct: 900  PNVRIYNMLIDGCCSKGKIEDAFRFSEEMFKKGIELNLVTYNTLIDGLSMNGKLAEAEDM 959

Query: 455  LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
            LLE+ + G +P   TY  L+        +     L  ++   G  P  K    L  +  +
Sbjct: 960  LLEISRKGLKPDVFTYNSLISGYRFAGNVQRCIALYEEMKTSGIKPTLKTYHLLISLCTK 1019

Query: 515  AGIE 518
             GIE
Sbjct: 1020 EGIE 1023



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 126/301 (41%), Gaps = 12/301 (3%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           + +A  +   +   GI P   + T+L+    K          F ++    F+P K +Y  
Sbjct: 498 ISEAADLFFALRNEGIFPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGK 557

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
            I A V       G+ L + M    I  +  IY  L+    +   ++ A Q+ + M    
Sbjct: 558 AIQAAVKLSDVGKGLELFNRMKHDRISPTVFIYNVLIDGLCKVRQMKDAEQLFDEMLARR 617

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P+L +   L++ Y + G+P+++    + M     +P      +++    K  +++ A 
Sbjct: 618 LLPSLITYNTLIDGYCKDGNPEKSFKVRERMKADNIEPSLITFNTLLKGLFKAGMVEDAE 677

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
           N+L E++  GF P   T+++L D        ++A+  LG + E       K+    C + 
Sbjct: 678 NVLTEMKDQGFVPDAFTFSILFDGYSS---NDKADAALG-VYETAVDSGLKMNAYTCSIL 733

Query: 513 ARA----GIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQDAQRVHGLMEAQ 566
             A    G  +KA + LG   AK   + P++  +  +I+G    G L  A+     ME Q
Sbjct: 734 LNALCKEGQIEKAEEILGREMAKG--LVPNEVLYNTMIDGYSRKGDLVGARMKIDAMEKQ 791

Query: 567 G 567
           G
Sbjct: 792 G 792



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/275 (21%), Positives = 116/275 (42%), Gaps = 6/275 (2%)

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A + F +LR+ G  P       ++   V   Q ++ +++   ++ S    S+ +Y  
Sbjct: 498 ISEAADLFFALRNEGIFPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGK 557

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
            +++  +  DV    ++ N M+ +   PT+    +L++   +      A   FD M+   
Sbjct: 558 AIQAAVKLSDVGKGLELFNRMKHDRISPTVFIYNVLIDGLCKVRQMKDAEQLFDEMLARR 617

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P      ++I  Y K    +K+  +   ++ D  EP   T+  L+  L +  ++ +AE
Sbjct: 618 LLPSLITYNTLIDGYCKDGNPEKSFKVRERMKADNIEPSLITFNTLLKGLFKAGMVEDAE 677

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE---QMGPDDFERII 544
            +L ++ + G  P       L D Y+      KA  ALG  E   +   +M       ++
Sbjct: 678 NVLTEMKDQGFVPDAFTFSILFDGYSS---NDKADAALGVYETAVDSGLKMNAYTCSILL 734

Query: 545 NGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
           N L   G ++ A+ + G   A+G   +E L   +I
Sbjct: 735 NALCKEGQIEKAEEILGREMAKGLVPNEVLYNTMI 769



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 81/200 (40%), Gaps = 35/200 (17%)

Query: 248  LSEESF----QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS 303
             SEE F    + N+  Y+ LID  +    L +AE +L +++  G+ PD+ T   L+  Y 
Sbjct: 924  FSEEMFKKGIELNLVTYNTLIDGLSMNGKLAEAEDMLLEISRKGLKPDVFTYNSLISGYR 983

Query: 304  KAGNLDRAKEAFESLRSHG-------------------------------FQPDKKVYNS 332
             AGN+ R    +E +++ G                                QPD  VYN 
Sbjct: 984  FAGNVQRCIALYEEMKTSGIKPTLKTYHLLISLCTKEGIELTKKIFGEMSLQPDLLVYNG 1043

Query: 333  MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
            ++  Y   G      +L   MI   I   +  Y +L+    + G +     + + M+  E
Sbjct: 1044 VLHCYAVHGDMDKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMKARE 1103

Query: 393  FQPTLESCTLLVEAYGQAGD 412
             +P  ++  ++V+ + +  D
Sbjct: 1104 MEPEADTYDIIVKGHCEMKD 1123



 Score = 43.5 bits (101), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 60/126 (47%), Gaps = 4/126 (3%)

Query: 256  NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
             ++ Y  LI    KE  +E  ++I  +M+   + PD++    ++H Y+  G++D+A    
Sbjct: 1006 TLKTYHLLISLCTKEG-IELTKKIFGEMS---LQPDLLVYNGVLHCYAVHGDMDKAFNLQ 1061

Query: 316  ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
            + +       DK  YNS+I+  +  G+     SL+D M    +E   + Y  +++   + 
Sbjct: 1062 KQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMKAREMEPEADTYDIIVKGHCEM 1121

Query: 376  GDVRGA 381
             D  GA
Sbjct: 1122 KDYMGA 1127


>gi|414586743|tpg|DAA37314.1| TPA: hypothetical protein ZEAMMB73_981845 [Zea mays]
          Length = 524

 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 121/261 (46%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + +      V  Y+ L+ A   +    DA  +L++M +NG  PD+ T  +L++ Y K GN
Sbjct: 245 MVQRGIAMTVATYNLLMHALFMDARASDAYAVLEEMQKNGFSPDVFTYNILINGYCKEGN 304

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
             +A E FE +   G +     Y S+I  +   GQ +    L ++ +  GI     +Y A
Sbjct: 305 EKKALEVFEEMSQKGVRATAVTYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNA 364

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+ S    GD+  A +I   M  +   P   +   L+  +   G  D+AR+  D M + G
Sbjct: 365 LINSHCTGGDMERAYEIMAEMEKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRG 424

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            +PD     ++I+ Y  K  +  AL +  E+   GF P   TY  L+  L +++  ++AE
Sbjct: 425 IQPDLVSYNTLISGYSMKGDIKDALRVRDEMMDKGFNPTLMTYNALIQGLCKIRQGDDAE 484

Query: 488 QLLGKISELGEAPPFKIQVSL 508
            L+ ++   G  P     +SL
Sbjct: 485 NLMKEMVAKGITPDDSTYISL 505



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 101/230 (43%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + +  F  +V  Y+ LI+ + KE   + A  + ++M++ G+    VT T L++++S+ G 
Sbjct: 280 MQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRATAVTYTSLIYVFSRKGQ 339

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +      F      G +PD  +YN++I ++   G  +    ++  M    I   +  Y  
Sbjct: 340 VQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAEMEKKRIPPDDMTYNT 399

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+R F   G +  A  + + M     QP L S   L+  Y   GD   A    D M+  G
Sbjct: 400 LMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDIKDALRVRDEMMDKG 459

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
             P      ++I    K    D A NL+ E+   G  P  +TY  L++ L
Sbjct: 460 FNPTLMTYNALIQGLCKIRQGDDAENLMKEMVAKGITPDDSTYISLIEGL 509



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 75/370 (20%), Positives = 147/370 (39%), Gaps = 37/370 (10%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNE-NGIVPDIVTSTVLVHMYSKAGNLDRAKEA 314
           N   Y+ +I        ++ A  ++++M E  GI PD  T   L+  + K G ++ A + 
Sbjct: 146 NAVTYNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAVKV 205

Query: 315 FESLRSHG-FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
           F+ + + G   P   +YN++I  Y + G+  + +   + M+  GI  +   Y  L+ +  
Sbjct: 206 FDEMLTKGEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATYNLLMHALF 265

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM---------- 423
                  A  +   M+   F P + +  +L+  Y + G+  +A   F+ M          
Sbjct: 266 MDARASDAYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRATAV 325

Query: 424 -------------------------IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
                                    ++ G +PD     ++I ++     +++A  ++ E+
Sbjct: 326 TYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAEM 385

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
           EK    P   TY  L+     L  ++EA  L+ ++++ G  P      +L   Y+  G  
Sbjct: 386 EKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDI 445

Query: 519 KKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVAL 578
           K AL+    +  K        +  +I GL       DA+ +   M A+G    +   ++L
Sbjct: 446 KDALRVRDEMMDKGFNPTLMTYNALIQGLCKIRQGDDAENLMKEMVAKGITPDDSTYISL 505

Query: 579 ISSQTFNRQR 588
           I   T   +R
Sbjct: 506 IEGLTTEDER 515



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 120/283 (42%), Gaps = 6/283 (2%)

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG-FQPDKKVYNSMIMAYVNAGQPKLGMS 348
           P+ VT   ++  +   G +  A E    +R  G   PDK  Y ++I  +   G+ +  + 
Sbjct: 145 PNAVTYNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAVK 204

Query: 349 LVDMMITSG-IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAY 407
           + D M+T G +  S  +Y AL+  +   G +  A Q    M       T+ +  LL+ A 
Sbjct: 205 VFDEMLTKGEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATYNLLMHAL 264

Query: 408 GQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGP 467
                   A +  + M + G  PD      +I  Y K+    KAL +  E+ + G     
Sbjct: 265 FMDARASDAYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRATA 324

Query: 468 ATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGF 527
            TYT L+    R   + E ++L     + G  P   +  +L + +   G  ++A + +  
Sbjct: 325 VTYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMA- 383

Query: 528 LEAKKEQMGPDD--FERIINGLLAGGFLQDAQRVHGLMEAQGF 568
            E +K+++ PDD  +  ++ G    G L +A+ +   M  +G 
Sbjct: 384 -EMEKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGI 425



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 7/155 (4%)

Query: 235 QNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVT 294
           Q T   F VA     ++  + +V  Y+ LI++H     +E A  I+ +M +  I PD +T
Sbjct: 341 QETDRLFNVA----VKKGIRPDVVMYNALINSHCTGGDMERAYEIMAEMEKKRIPPDDMT 396

Query: 295 STVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMI 354
              L+  +   G LD A+   + +   G QPD   YN++I  Y   G  K  + + D M+
Sbjct: 397 YNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDIKDALRVRDEMM 456

Query: 355 TSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389
             G   +   Y AL++   +   +R      N+M+
Sbjct: 457 DKGFNPTLMTYNALIQGLCK---IRQGDDAENLMK 488


>gi|168030898|ref|XP_001767959.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162680801|gb|EDQ67234.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 957

 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/204 (34%), Positives = 99/204 (48%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+  + A+ K   L+ A  +  +M E  I P   T T+L+ ++SK G+L RA +AFE L 
Sbjct: 652 YNTSLKANLKSGNLKGALEVYGEMQEADIEPSAKTYTILISLFSKLGDLGRAVQAFEVLN 711

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           S     D+  Y+ MI  Y  AG+PK    L   M T G + +E IY  LL +FA+ G   
Sbjct: 712 SSEVGADEIAYSQMIHCYGCAGRPKEAADLFQEMETKGFKPNEVIYNNLLDAFARAGLFA 771

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  + + MR +   P+  +  LL+ AYG  G P  A S    M   G  PD R    +I
Sbjct: 772 EARLLLSDMRRKGCPPSSVTYLLLMSAYGSKGKPADAESLLHLMQDRGLYPDCRHYNEVI 831

Query: 440 AAYGKKNLLDKALNLLLELEKDGF 463
            AYG    L  A  +  EL+  G 
Sbjct: 832 RAYGNVGKLSDACRIFYELKTVGI 855



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 117/257 (45%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +I   A    LE+A  +  +M ENG + D VT ++LVH Y+K G    A    +  +
Sbjct: 582 YNTMIKLCAVCKELEEAIFVFDRMEENGRMFDAVTVSILVHAYTKEGRFKDAAGLMKRAK 641

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G   D   YN+ + A + +G  K  + +   M  + IE S + Y  L+  F++ GD+ 
Sbjct: 642 KVGVAMDTVAYNTSLKANLKSGNLKGALEVYGEMQEADIEPSAKTYTILISLFSKLGDLG 701

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A Q   ++   E      + + ++  YG AG P +A   F  M   G KP++    +++
Sbjct: 702 RAVQAFEVLNSSEVGADEIAYSQMIHCYGCAGRPKEAADLFQEMETKGFKPNEVIYNNLL 761

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            A+ +  L  +A  LL ++ + G  P   TY +L+   G      +AE LL  + + G  
Sbjct: 762 DAFARAGLFAEARLLLSDMRRKGCPPSSVTYLLLMSAYGSKGKPADAESLLHLMQDRGLY 821

Query: 500 PPFKIQVSLCDMYARAG 516
           P  +    +   Y   G
Sbjct: 822 PDCRHYNEVIRAYGNVG 838



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 114/238 (47%), Gaps = 1/238 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +I A  K    +++E +   M + GIVP   T T++++++SKAG    A E    ++
Sbjct: 250 YNTIICALGKLGRYQESEALYLDMKKQGIVPSKFTYTIMINVWSKAGRFASAAETLAEMQ 309

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G   D+ VY S+I  Y  AG  +    +   M T G+   E+ Y ++ +  A+ G   
Sbjct: 310 RSGCIADEVVYCSIINMYGKAGLYEEAEKIFKEMDTLGLLSHEKSYTSMAKVRAEAGRHA 369

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++ ++M  +    T  +   L+  + + GD +QA   ++ M+  G   +     +MI
Sbjct: 370 EALKLFDVMAEKGLLTTRMTWNTLLHCFVRIGDVEQATKVYNDMVEAG-SANVVTYGNMI 428

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
             Y K  +++ A NLL E+ + G +P    Y   V       +I++A  ++ ++ + G
Sbjct: 429 NLYSKFQMVEDAENLLAEMRESGVKPDEYIYGSFVKLYCNSDMIDKATMVVQEMKDDG 486



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 75/334 (22%), Positives = 131/334 (39%), Gaps = 35/334 (10%)

Query: 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320
           ++L+   A+   L +AE +L K+ E G       + +++++Y + G   +AK  F SL+ 
Sbjct: 513 NQLLIKRAEAGELREAELLLDKLVEAGGCIVDTAAVLMINLYGRRGLFQKAKSLFNSLQK 572

Query: 321 HGFQPDKKVYNSMI-----------------------------------MAYVNAGQPKL 345
               P   VYN+MI                                    AY   G+ K 
Sbjct: 573 KDHPPSLYVYNTMIKLCAVCKELEEAIFVFDRMEENGRMFDAVTVSILVHAYTKEGRFKD 632

Query: 346 GMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVE 405
              L+      G+      Y   L++  + G+++GA ++   M+  + +P+ ++ T+L+ 
Sbjct: 633 AAGLMKRAKKVGVAMDTVAYNTSLKANLKSGNLKGALEVYGEMQEADIEPSAKTYTILIS 692

Query: 406 AYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
            + + GD  +A   F+ +       D+   + MI  YG      +A +L  E+E  GF+P
Sbjct: 693 LFSKLGDLGRAVQAFEVLNSSEVGADEIAYSQMIHCYGCAGRPKEAADLFQEMETKGFKP 752

Query: 466 GPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
               Y  L+D   R  L  EA  LL  +   G  P     + L   Y   G    A   L
Sbjct: 753 NEVIYNNLLDAFARAGLFAEARLLLSDMRRKGCPPSSVTYLLLMSAYGSKGKPADAESLL 812

Query: 526 GFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
             ++ +        +  +I      G L DA R+
Sbjct: 813 HLMQDRGLYPDCRHYNEVIRAYGNVGKLSDACRI 846



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 109/249 (43%), Gaps = 6/249 (2%)

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL 349
           P ++  T L+ +Y +AG L  A+E    +   G +PD+     M+ AY    +    +  
Sbjct: 105 PSVIAYTTLLGIYGQAGKLTLAEETLSEMLDAGVEPDEVAGGCMLEAYARWERYDTLLEF 164

Query: 350 VDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409
            + M   G+  S  +Y  ++ +  +      A  +   + +E+ +P      +++    +
Sbjct: 165 YEAMRQRGLVPSAHVYRTMIVTLYKAERHSDALMLWEDLLVEKLEPNFVLYAIIIHILNK 224

Query: 410 AGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPAT 469
            G  + A   F  M   GH PD+    ++I A GK     ++  L L+++K G  P   T
Sbjct: 225 EGRTEDAVHTFKDMRAAGHLPDELLYNTIICALGKLGRYQESEALYLDMKKQGIVPSKFT 284

Query: 470 YTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKA------LQ 523
           YT++++   +      A + L ++   G      +  S+ +MY +AG+ ++A      + 
Sbjct: 285 YTIMINVWSKAGRFASAAETLAEMQRSGCIADEVVYCSIINMYGKAGLYEEAEKIFKEMD 344

Query: 524 ALGFLEAKK 532
            LG L  +K
Sbjct: 345 TLGLLSHEK 353



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 78/389 (20%), Positives = 166/389 (42%), Gaps = 33/389 (8%)

Query: 218 LQPSRIDWINLLDRLR-----EQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC 272
           L  +R+ W  LL         EQ T++Y  + E      +   NV  Y  +I+ ++K   
Sbjct: 383 LLTTRMTWNTLLHCFVRIGDVEQATKVYNDMVE------AGSANVVTYGNMINLYSKFQM 436

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQP------- 325
           +EDAE +L +M E+G+ PD       V +Y  +  +D+A    + ++  G +        
Sbjct: 437 VEDAENLLAEMRESGVKPDEYIYGSFVKLYCNSDMIDKATMVVQEMKDDGLESVCNEREM 496

Query: 326 -----------DKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
                      D ++ N +++    AG+ +    L+D ++ +G    +   + ++  + +
Sbjct: 497 FPLGQALQSPIDTQILNQLLIKRAEAGELREAELLLDKLVEAGGCIVDTAAVLMINLYGR 556

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
            G  + A  + N ++ ++  P+L     +++      + ++A   FD M   G   D   
Sbjct: 557 RGLFQKAKSLFNSLQKKDHPPSLYVYNTMIKLCAVCKELEEAIFVFDRMEENGRMFDAVT 616

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
            + ++ AY K+     A  L+   +K G       Y   +    +   +  A ++ G++ 
Sbjct: 617 VSILVHAYTKEGRFKDAAGLMKRAKKVGVAMDTVAYNTSLKANLKSGNLKGALEVYGEMQ 676

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGF 552
           E    P  K    L  ++++ G   +A+QA   L +   ++G D+  + ++I+     G 
Sbjct: 677 EADIEPSAKTYTILISLFSKLGDLGRAVQAFEVLNSS--EVGADEIAYSQMIHCYGCAGR 734

Query: 553 LQDAQRVHGLMEAQGFAASERLKVALISS 581
            ++A  +   ME +GF  +E +   L+ +
Sbjct: 735 PKEAADLFQEMETKGFKPNEVIYNNLLDA 763



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 121/291 (41%), Gaps = 43/291 (14%)

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL 349
           P+ V   +++H+ +K G  + A   F+ +R+ G  PD+ +YN++I A    G+ +   +L
Sbjct: 210 PNFVLYAIIIHILNKEGRTEDAVHTFKDMRAAGHLPDELLYNTIICALGKLGRYQESEAL 269

Query: 350 VDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQ-ITNIMRIEEFQPTLESCTLLVEAYG 408
              M   GI  S+  Y  ++  +++ G    A + +  + R       +  C++ +  YG
Sbjct: 270 YLDMKKQGIVPSKFTYTIMINVWSKAGRFASAAETLAEMQRSGCIADEVVYCSI-INMYG 328

Query: 409 QAGDPDQARSNFDYMIRLGHKPDDRCTASM----------------IAAYGKKNLLDKAL 452
           +AG  ++A   F  M  LG    ++   SM                     +K LL   +
Sbjct: 329 KAGLYEEAEKIFKEMDTLGLLSHEKSYTSMAKVRAEAGRHAEALKLFDVMAEKGLLTTRM 388

Query: 453 --NLLL-------------ELEKDGFEPGPA---TYTVLVDWLGRLQLINEAEQLLGKIS 494
             N LL             ++  D  E G A   TY  +++   + Q++ +AE LL ++ 
Sbjct: 389 TWNTLLHCFVRIGDVEQATKVYNDMVEAGSANVVTYGNMINLYSKFQMVEDAENLLAEMR 448

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIIN 545
           E G  P   I  S   +Y  + +  KA   +       ++M  D  E + N
Sbjct: 449 ESGVKPDEYIYGSFVKLYCNSDMIDKATMVV-------QEMKDDGLESVCN 492



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/299 (20%), Positives = 117/299 (39%), Gaps = 35/299 (11%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           +  +V  Y+ L+  + +   L  AE  L +M + G+ PD V    ++  Y++    D   
Sbjct: 103 YSPSVIAYTTLLGIYGQAGKLTLAEETLSEMLDAGVEPDEVAGGCMLEAYARWERYDTLL 162

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           E +E++R  G  P   VY +MI+    A +    + L + ++   +E +  +Y  ++   
Sbjct: 163 EFYEAMRQRGLVPSAHVYRTMIVTLYKAERHSDALMLWEDLLVEKLEPNFVLYAIIIHIL 222

Query: 373 AQCG----------DVRGAGQ----------ITNIMRIEEFQ---------------PTL 397
            + G          D+R AG           I  + ++  +Q               P+ 
Sbjct: 223 NKEGRTEDAVHTFKDMRAAGHLPDELLYNTIICALGKLGRYQESEALYLDMKKQGIVPSK 282

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
            + T+++  + +AG    A      M R G   D+    S+I  YGK  L ++A  +  E
Sbjct: 283 FTYTIMINVWSKAGRFASAAETLAEMQRSGCIADEVVYCSIINMYGKAGLYEEAEKIFKE 342

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
           ++  G      +YT +           EA +L   ++E G         +L   + R G
Sbjct: 343 MDTLGLLSHEKSYTSMAKVRAEAGRHAEALKLFDVMAEKGLLTTRMTWNTLLHCFVRIG 401


>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 794

 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 111/224 (49%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ +I+   KE  L+ A     +M + GI+P++VT + ++    KA  +D+A E  
Sbjct: 198 DVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVL 257

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
            S+  +G  P+ + YNS++  Y ++GQPK  +  +  M + G+E     Y +L+    + 
Sbjct: 258 TSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKN 317

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G    A ++ + M     +P + +   L++ Y   G   +     D M+R G  P+    
Sbjct: 318 GRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVF 377

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
           + +I AY K+  +D+A+ +  ++ + G  P   TY  ++  L +
Sbjct: 378 SILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCK 421



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 89/383 (23%), Positives = 169/383 (44%), Gaps = 12/383 (3%)

Query: 195 TDKILSLEKEEDPSPLLAEWKELLQ----PSRIDWINLLDRLREQNTQLYFKVAELVLS- 249
           T  I    KE D       + E+L     P+ + + +++  L +   Q   K  E++ S 
Sbjct: 203 TTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCK--AQAMDKAMEVLTSM 260

Query: 250 -EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNL 308
            +     N R Y+ ++  +      ++A   LKKM+ +G+ PD+VT   L+    K G  
Sbjct: 261 VKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRC 320

Query: 309 DRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLAL 368
             A++ F+S+   G +P+   Y +++  Y   G       L+D+M+ +GI  +  ++  L
Sbjct: 321 TEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSIL 380

Query: 369 LRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH 428
           + ++A+ G V  A  + + MR +   P   +   ++    ++G  + A   F+ MI    
Sbjct: 381 ICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERL 440

Query: 429 KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQ 488
            P +    S+I +    +  DKA  L+LE+   G       +  ++D   +   + E+E+
Sbjct: 441 SPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEK 500

Query: 489 LLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIING 546
           L   +  +G  P      +L D Y  AG   +A + L  + +    M PD   +  +ING
Sbjct: 501 LFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVG--MKPDCVTYNTLING 558

Query: 547 LLAGGFLQDAQRVHGLMEAQGFA 569
                 ++DA  +   ME+ G +
Sbjct: 559 YCKISRMEDALVLFREMESSGVS 581



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 140/314 (44%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           +S LI A+AK+  ++ A  +  KM + G+ PD VT   ++ +  K+G ++ A   FE + 
Sbjct: 377 FSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMI 436

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
                P   VYNS+I +     +      L+  M+  GI      + +++ S  + G V 
Sbjct: 437 DERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVI 496

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            + ++ ++M     +P + + + L++ Y  AG  D+A      M+ +G KPD     ++I
Sbjct: 497 ESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLI 556

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             Y K + ++ AL L  E+E  G  P   TY +++  L + +    A++L   I+E G  
Sbjct: 557 NGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQ 616

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
                   +     +  +  +AL+    L     Q+    F  +I  LL  G   +A+ +
Sbjct: 617 LELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDL 676

Query: 560 HGLMEAQGFAASER 573
              + A G     R
Sbjct: 677 FAALSANGLVPDVR 690



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 99/218 (45%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++ +ID+H KE  + ++E++   M   G+ PDI+T + L+  Y  AG +D A +   S+ 
Sbjct: 482 FNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMV 541

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           S G +PD   YN++I  Y    + +  + L   M +SG+      Y  +L+   Q     
Sbjct: 542 SVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTA 601

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++   +     Q  L +  +++    +    D+A   F  +     + + R    MI
Sbjct: 602 AAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMI 661

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
            A  K    D+A +L   L  +G  P   TY+++ + L
Sbjct: 662 GALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENL 699



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 87/209 (41%), Gaps = 9/209 (4%)

Query: 240 YFKVAELVLSEESFQTNVR--------DYSKLIDAHAKENCLEDAERILKKMNENGIVPD 291
           + K   ++ SE+ F   VR         YS LID +     +++A ++L  M   G+ PD
Sbjct: 489 HCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPD 548

Query: 292 IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVD 351
            VT   L++ Y K   ++ A   F  + S G  PD   YN ++       +      L  
Sbjct: 549 CVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYV 608

Query: 352 MMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAG 411
            +  SG +     Y  +L    +      A ++   + + + Q    +  +++ A  + G
Sbjct: 609 GITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVG 668

Query: 412 DPDQARSNFDYMIRLGHKPDDRCTASMIA 440
             D+A+  F  +   G  PD R T S++A
Sbjct: 669 RNDEAKDLFAALSANGLVPDVR-TYSLMA 696



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 92/216 (42%), Gaps = 11/216 (5%)

Query: 187 ITGKCKLITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKVAE 245
           I G CK+         + ED   L  E +   + P  I +  +L  L +       K   
Sbjct: 556 INGYCKI--------SRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELY 607

Query: 246 LVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKA 305
           + ++E   Q  +  Y+ ++    K N  ++A R+ + +    +  +  T  +++    K 
Sbjct: 608 VGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKV 667

Query: 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
           G  D AK+ F +L ++G  PD + Y+ M    +  G  +    L   M  +G   +  + 
Sbjct: 668 GRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRML 727

Query: 366 LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCT 401
            +++R   Q GD+  AG  T +  I+E   +LE+ T
Sbjct: 728 NSIVRKLLQRGDITRAG--TYLFMIDEKHFSLEAST 761



 Score = 45.8 bits (107), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 111/257 (43%), Gaps = 23/257 (8%)

Query: 325 PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQI 384
           P+   Y  +I +   AG+  LG + +  +I  G       +  LL+    C D R +  +
Sbjct: 89  PNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGL--CADKRTSDAM 146

Query: 385 TNIMRIEEFQPTLESCTLLVEAYG--QAGDPDQARSNFDYMIRLGHKPDD--RC------ 434
             ++R    + T   C   V +Y     G  D+ RS  + +  L   PDD   C      
Sbjct: 147 DIVLR----RMTQLGCIPNVFSYNILLKGLCDENRSQ-EALELLQMMPDDGGDCPPDVVS 201

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
             ++I  + K+  LDKA     E+   G  P   TY+ ++  L + Q +++A ++L  + 
Sbjct: 202 YTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMV 261

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFL-EAKKEQMGPD--DFERIINGLLAGG 551
           + G  P  +   S+   Y  +G  K   +A+GFL +   + + PD   +  +++ L   G
Sbjct: 262 KNGVMPNCRTYNSIVHGYCSSGQPK---EAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNG 318

Query: 552 FLQDAQRVHGLMEAQGF 568
              +A+++   M  +G 
Sbjct: 319 RCTEARKMFDSMTKRGL 335


>gi|302821741|ref|XP_002992532.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
 gi|300139734|gb|EFJ06470.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
          Length = 759

 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 125/271 (46%), Gaps = 1/271 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  Y+ +IDA +K      A RI ++M E G+ PD +T   L+    +A   +     F
Sbjct: 188 NLVVYNAVIDACSKGGDYPTALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDRIF 247

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMI-TSGIERSEEIYLALLRSFAQ 374
             +   G   D   YN++I  Y   GQ  LG +L++ M  +SGIE S   Y  ++  +A+
Sbjct: 248 AEMEERGIARDDVTYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAK 307

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
            G    A  +   MR +  +P       +V+ + + G+ D+A S    M   G   D   
Sbjct: 308 LGLAHEAIALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVT 367

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
             +++ +YGK+    +A++LL E+++ G  P   TY+ L+D   +     +A  L   + 
Sbjct: 368 YNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVK 427

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
           + G  P   +  +L D   + G   +AL  L
Sbjct: 428 KAGLQPDVVLYSTLVDGCCKNGSPDEALALL 458



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 153/352 (43%), Gaps = 22/352 (6%)

Query: 213 EWKELLQPSRIDW-------INLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLI 264
           +W  L Q  R  W       I+ L RL R    QL F  A        F  NV  YS LI
Sbjct: 107 DWMVLQQNLRSQWDKVTSTIISSLGRLGRSDWAQLIFDRA----VGAGFGNNVFVYSSLI 162

Query: 265 DAHAKENCLEDAERILKKMNENGIV--PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG 322
            A+ +   L  A  I + M    +V  P++V    ++   SK G+   A   F  +   G
Sbjct: 163 CAYGRSGKLAKAVEIFEAMK---VVCKPNLVVYNAVIDACSKGGDYPTALRIFREMLEQG 219

Query: 323 FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR-GA 381
             PD+  +N++I A   A + +    +   M   GI R +  Y  L+ ++ + G +  GA
Sbjct: 220 MSPDRITFNTLISAAGRANRWEECDRIFAEMEERGIARDDVTYNTLIATYCRGGQMHLGA 279

Query: 382 GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441
             +  + +    +P++ + + +++ Y + G   +A + F  M     +PD  C  +M+  
Sbjct: 280 ALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQNVEPDGICYNTMVDI 339

Query: 442 YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
           + +    D+A ++   +E+ GF     TY  L+D  G+     EA  LL ++ + G +P 
Sbjct: 340 HARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGASPN 399

Query: 502 FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGG 551
                +L D Y + G  + A+    F + KK  + PD   +  +++G    G
Sbjct: 400 ILTYSALIDAYCKHGFHRDAMAL--FQDVKKAGLQPDVVLYSTLVDGCCKNG 449



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 116/256 (45%), Gaps = 1/256 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL- 318
           ++ LI A  + N  E+ +RI  +M E GI  D VT   L+  Y + G +       E++ 
Sbjct: 227 FNTLISAAGRANRWEECDRIFAEMEERGIARDDVTYNTLIATYCRGGQMHLGAALMETMA 286

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
           +S G +P    Y++MI  Y   G     ++L   M    +E     Y  ++   A+ G+ 
Sbjct: 287 KSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQNVEPDGICYNTMVDIHARLGNF 346

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             A  I   M    F   + +   L+++YG+ G   +A S  + M + G  P+    +++
Sbjct: 347 DEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSAL 406

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           I AY K      A+ L  +++K G +P    Y+ LVD   +    +EA  LL ++++ G 
Sbjct: 407 IDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGI 466

Query: 499 APPFKIQVSLCDMYAR 514
            P      SL D Y R
Sbjct: 467 RPNVITYNSLLDAYGR 482



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 147/346 (42%), Gaps = 24/346 (6%)

Query: 260 YSKLIDAHAKENCLEDAERILKKM-NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318
           Y+ LI  + +   +     +++ M   +GI P ++T + ++  Y+K G    A   F+ +
Sbjct: 262 YNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEM 321

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
           R+   +PD   YN+M+  +   G      S+   M  +G  +    Y ALL S+ + G  
Sbjct: 322 RNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKF 381

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
           R A  +   M+     P + + + L++AY + G    A + F  + + G +PD    +++
Sbjct: 382 REAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTL 441

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE------QLLGK 492
           +    K    D+AL LL E+  +G  P   TY  L+D  GR  L+           LL +
Sbjct: 442 VDGCCKNGSPDEALALLEEMADNGIRPNVITYNSLLDAYGRQCLMVRKTFPKLRFFLLPR 501

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAG 550
           ++ L +      Q SL D   +  +   A +   F E  K  + P+   F  I+N     
Sbjct: 502 VTMLLKPSMQDDQQSLVDPKQKQALVLAAARV--FREMAKNGVKPNVVTFSSILNACSHC 559

Query: 551 GFLQDAQ-----------RVHGLMEAQGFAASERLKVALISSQTFN 585
             ++DA            RV+G+    G     R++V   +   FN
Sbjct: 560 ASVEDASNLLEAMRVFDGRVYGV--THGLLMGFRIRVWRDAETLFN 603



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 99/204 (48%)

Query: 245 ELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK 304
           E +      + +V  YS +ID +AK     +A  + ++M    + PD +    +V ++++
Sbjct: 283 ETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQNVEPDGICYNTMVDIHAR 342

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
            GN D A     ++   GF  D   YN+++ +Y   G+ +  MSL++ M   G   +   
Sbjct: 343 LGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILT 402

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
           Y AL+ ++ + G  R A  +   ++    QP +   + LV+   + G PD+A +  + M 
Sbjct: 403 YSALIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMA 462

Query: 425 RLGHKPDDRCTASMIAAYGKKNLL 448
             G +P+     S++ AYG++ L+
Sbjct: 463 DNGIRPNVITYNSLLDAYGRQCLM 486


>gi|242073534|ref|XP_002446703.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
 gi|241937886|gb|EES11031.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
          Length = 802

 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 86/392 (21%), Positives = 175/392 (44%), Gaps = 27/392 (6%)

Query: 204 EEDPSPLLAEWKELLQPSRIDWINLLDRLREQNT----------QLYFKVAELVLSEESF 253
           EE PSP L    E +    +    +L+++   N            + F++ ++++ +  F
Sbjct: 226 EELPSPDLLALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDMAFQIIKVMMGK-GF 284

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
             +   YSK+I    +   +E A  + ++M   G+ PD+ T T+L+  + KAG +++A+ 
Sbjct: 285 VPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYTILIDSFCKAGLIEQARS 344

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            F+ +RS G   +   Y +++ AY+ A Q      + + MI +G   +   Y AL+    
Sbjct: 345 WFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIFNRMIDAGCPPNTITYSALVDGLC 404

Query: 374 QCGDVRGAGQITNIM----------------RIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
           + G+++ A ++   +                  +   P + +   L++   +A     A+
Sbjct: 405 KAGEIQKACEVYTKLIGTSDNVGSDFYFEGKHTDSIAPNVVTYGALIDGLCKAHKVVDAQ 464

Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
              D M+  G +P+     ++I  + K   +D A  + L + K G+ P   TYT L+D +
Sbjct: 465 ELLDAMLSNGCEPNHIIYDALIDGFCKVGKIDNAQEVFLRMSKCGYLPTVHTYTSLIDAM 524

Query: 478 GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP 537
            + + ++ A ++L ++ E    P      ++ D   R G  +KAL+ L  +E K      
Sbjct: 525 FKDRRLDLAMKVLSQMVESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEEKGCSPNV 584

Query: 538 DDFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
             +  +I+GL   G +  + ++   M  +G A
Sbjct: 585 VTYTALIDGLGKSGKVDLSLQLFIQMSTKGCA 616



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 123/282 (43%), Gaps = 16/282 (5%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA- 314
           NV  Y+ L+ A+ K   L  A  I  +M + G  P+ +T + LV    KAG + +A E  
Sbjct: 357 NVVTYTALLHAYLKAKQLPQASDIFNRMIDAGCPPNTITYSALVDGLCKAGEIQKACEVY 416

Query: 315 ---------------FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
                          FE   +    P+   Y ++I     A +      L+D M+++G E
Sbjct: 417 TKLIGTSDNVGSDFYFEGKHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCE 476

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
            +  IY AL+  F + G +  A ++   M    + PT+ + T L++A  +    D A   
Sbjct: 477 PNHIIYDALIDGFCKVGKIDNAQEVFLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKV 536

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
              M+     P+     +MI    +     KAL LL  +E+ G  P   TYT L+D LG+
Sbjct: 537 LSQMVESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGK 596

Query: 480 LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKA 521
              ++ + QL  ++S  G AP +     L +    AG+  +A
Sbjct: 597 SGKVDLSLQLFIQMSTKGCAPNYVTYRVLINHCCAAGLLDEA 638



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 145/341 (42%), Gaps = 23/341 (6%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           +S   NV  Y  LID   K + + DA+ +L  M  NG  P+ +    L+  + K G +D 
Sbjct: 438 DSIAPNVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDALIDGFCKVGKIDN 497

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A+E F  +   G+ P    Y S+I A     +  L M ++  M+ S    +   Y A++ 
Sbjct: 498 AQEVFLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAMID 557

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
              + G+ + A ++ ++M  +   P + + T L++  G++G  D +   F  M   G  P
Sbjct: 558 GLCRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGCAP 617

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           +      +I       LLD+A +LL E+++  +      Y  +V    +  + +     L
Sbjct: 618 NYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYLQGYCSVVQGFSKKFIAS-----L 672

Query: 491 GKISEL---GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQM---------GPD 538
           G + EL   G  P   +   L D +++AG  ++A      LE  KE M           D
Sbjct: 673 GLLEELESHGTVPIAPVYGLLIDNFSKAGRLEEA------LELHKEMMELSSSLNITSKD 726

Query: 539 DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
            +  +I  L     L+ A  ++  +  +G      + V LI
Sbjct: 727 MYTSLIQALCLASQLEKAFELYSEITRKGVVPELSVFVCLI 767



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 80/381 (20%), Positives = 153/381 (40%), Gaps = 44/381 (11%)

Query: 244 AELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS 303
           A +++  E F+ +    +++I    + +  ++A   L +M  N  +P++VT   L+  + 
Sbjct: 94  ALVMIEREDFKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLTGFL 153

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG------ 357
           K   L   K     +   G  P+  ++NS++ +Y NA        L+  M   G      
Sbjct: 154 KKKQLGWCKRIINMMMKEGCNPNPSLFNSLVHSYCNARDYPYAYKLLKRMADCGCPPGYV 213

Query: 358 --------------------IERSEEIYLALLRS-----------FAQC----GDVRGAG 382
                               +  +E++Y  +L S           FA+C    G    A 
Sbjct: 214 AYNIFIGSICGGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDMAF 273

Query: 383 QITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAY 442
           QI  +M  + F P   + + ++    +A   ++A   F  M  +G  PD      +I ++
Sbjct: 274 QIIKVMMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYTILIDSF 333

Query: 443 GKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPF 502
            K  L+++A +   E+   G      TYT L+    + + + +A  +  ++ + G  PP 
Sbjct: 334 CKAGLIEQARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIFNRMIDAG-CPPN 392

Query: 503 KIQVS-LCDMYARAGIEKKALQALGFLEAKKEQMGPD-DFERIINGLLAGGFLQDAQRVH 560
            I  S L D   +AG  +KA +    L    + +G D  FE      +A   +     + 
Sbjct: 393 TITYSALVDGLCKAGEIQKACEVYTKLIGTSDNVGSDFYFEGKHTDSIAPNVVTYGALID 452

Query: 561 GLMEAQGFAASERLKVALISS 581
           GL +A     ++ L  A++S+
Sbjct: 453 GLCKAHKVVDAQELLDAMLSN 473



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 130/288 (45%), Gaps = 19/288 (6%)

Query: 220 PSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAER 278
           P+   + +L+D + +++   L  KV   ++ E S   NV  Y+ +ID   +    + A +
Sbjct: 512 PTVHTYTSLIDAMFKDRRLDLAMKVLSQMV-ESSCTPNVVTYTAMIDGLCRIGECQKALK 570

Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338
           +L  M E G  P++VT T L+    K+G +D + + F  + + G  P+   Y  +I    
Sbjct: 571 LLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGCAPNYVTYRVLINHCC 630

Query: 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ---- 394
            AG      SL+  M  +   +  + Y ++++ F++         I ++  +EE +    
Sbjct: 631 AAGLLDEAHSLLSEMKQTYWPKYLQGYCSVVQGFSK-------KFIASLGLLEELESHGT 683

Query: 395 -PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD----DRCTASMIAAYGKKNLLD 449
            P      LL++ + +AG  ++A      M+ L    +    D  T S+I A    + L+
Sbjct: 684 VPIAPVYGLLIDNFSKAGRLEEALELHKEMMELSSSLNITSKDMYT-SLIQALCLASQLE 742

Query: 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           KA  L  E+ + G  P  + +  L+  L ++   NEA QL   I + G
Sbjct: 743 KAFELYSEITRKGVVPELSVFVCLIKGLIKVNKWNEALQLCYSICDEG 790



 Score = 45.4 bits (106), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 80/187 (42%), Gaps = 7/187 (3%)

Query: 318 LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ--C 375
           L+  G++P    YN+++     AGQ  +G  +   M  SG    +      +  FAQ  C
Sbjct: 31  LKDFGYRPSGATYNALVQVLATAGQMDMGFRVQKEMSESGFCMDKFT----VGCFAQALC 86

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
            + R +  +  I R E+F+     CT ++    +A   D+A S    M      P+    
Sbjct: 87  KEGRWSDALVMIER-EDFKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTY 145

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            +++  + KK  L     ++  + K+G  P P+ +  LV      +    A +LL ++++
Sbjct: 146 RTLLTGFLKKKQLGWCKRIINMMMKEGCNPNPSLFNSLVHSYCNARDYPYAYKLLKRMAD 205

Query: 496 LGEAPPF 502
            G  P +
Sbjct: 206 CGCPPGY 212


>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
          Length = 691

 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 139/311 (44%), Gaps = 8/311 (2%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
            + N+  ++ +++   K   +EDA ++  +M   G+ PD V+   LV  Y KAG    A 
Sbjct: 216 LKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEAL 275

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
             F  +   G  PD   + S+I     AG  +  ++LV  M   G++ +E  + AL+  F
Sbjct: 276 SVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGF 335

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + G +  A      MR    +P++     L+  Y   G  D+AR     M   G KPD 
Sbjct: 336 CKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDV 395

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
              +++I+AY K      A  L  ++ + G  P   TY+ L+  L   + +++A  L   
Sbjct: 396 VTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKN 455

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG--PD--DFERIINGLL 548
           + +LG  P      SL D + + G  ++AL     L  K  + G  PD   +  +INGL 
Sbjct: 456 MIKLGLQPDEFTYTSLIDGHCKEGNVERALS----LHDKMVKAGVLPDVVTYSVLINGLS 511

Query: 549 AGGFLQDAQRV 559
                 +AQ++
Sbjct: 512 KSARAMEAQQL 522



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 156/370 (42%), Gaps = 50/370 (13%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+  + K  C  +A  +  +M + GI+PD+VT T L+H+  KAGNL+ A      +R
Sbjct: 258 YNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMR 317

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G Q ++  + ++I  +   G     +  V  M    I+ S   Y AL+  +   G + 
Sbjct: 318 ERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMD 377

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGD-----------------PD-------- 414
            A ++ + M  +  +P + + + ++ AY +  D                 PD        
Sbjct: 378 EARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLI 437

Query: 415 ----------QARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
                      A   F  MI+LG +PD+    S+I  + K+  +++AL+L  ++ K G  
Sbjct: 438 RVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVL 497

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP---------------FKIQVSLC 509
           P   TY+VL++ L +     EA+QLL K+      P                 K  ++L 
Sbjct: 498 PDVVTYSVLINGLSKSARAMEAQQLLFKLYHEEPIPANTKYDALMHCCRKAELKSVLALL 557

Query: 510 DMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
             +   G+  +A +    +  +   +    +  +I+G    G +  A   H  M  +GFA
Sbjct: 558 KGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQRGFA 617

Query: 570 ASERLKVALI 579
            +    ++LI
Sbjct: 618 PNSTSTISLI 627



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 141/316 (44%), Gaps = 8/316 (2%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ L+ A  +   ++ AER++  M + G+ P++VT   +V+   KAG ++ A++ F
Sbjct: 184 NVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVF 243

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + +   G  PD   YN+++  Y  AG     +S+   M   GI      + +L+    + 
Sbjct: 244 DEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKA 303

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G++  A  +   MR    Q    + T L++ + + G  D A      M +   KP   C 
Sbjct: 304 GNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCY 363

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I  Y     +D+A  LL E+E  G +P   TY+ ++    +    + A +L  ++ E
Sbjct: 364 NALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLE 423

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG--PDDF--ERIINGLLAGG 551
            G  P      SL     R   E+K L     L     ++G  PD+F    +I+G    G
Sbjct: 424 KGVLPDAITYSSL----IRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEG 479

Query: 552 FLQDAQRVHGLMEAQG 567
            ++ A  +H  M   G
Sbjct: 480 NVERALSLHDKMVKAG 495



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 135/299 (45%), Gaps = 1/299 (0%)

Query: 287 GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLG 346
           G VP ++    ++   S A +L  A+  F+S+ S G  P+   YN +I A    G  K  
Sbjct: 111 GYVPSVLAYNAVLLALSDA-SLTSARRFFDSMLSDGVAPNVYTYNILIRALCGRGHRKEA 169

Query: 347 MSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA 406
           +S++  M  +G   +   Y  L+ +F + G+V GA ++  +M     +P L +   +V  
Sbjct: 170 LSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNG 229

Query: 407 YGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG 466
             +AG  + AR  FD M+R G  PD     +++  Y K     +AL++  E+ + G  P 
Sbjct: 230 MCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPD 289

Query: 467 PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALG 526
             T+T L+  + +   +  A  L+ ++ E G         +L D + + G    AL A+ 
Sbjct: 290 VVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVR 349

Query: 527 FLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFN 585
            +   + +     +  +ING    G + +A+ +   MEA+G          +IS+   N
Sbjct: 350 GMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKN 408



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 64/274 (23%), Positives = 119/274 (43%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           L  A R    M  +G+ P++ T  +L+      G+   A      +R  G  P+   YN+
Sbjct: 131 LTSARRFFDSMLSDGVAPNVYTYNILIRALCGRGHRKEALSILRDMRGAGCGPNVVTYNT 190

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           ++ A+  AG+      LV MM+  G++ +   + +++    + G +  A ++ + M  E 
Sbjct: 191 LVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREG 250

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P   S   LV  Y +AG   +A S F  M + G  PD     S+I    K   L+ A+
Sbjct: 251 LAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAV 310

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
            L+ ++ + G +    T+T L+D   +   +++A   +  + +    P      +L + Y
Sbjct: 311 TLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGY 370

Query: 513 ARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
              G   +A + L  +EAK  +     +  II+ 
Sbjct: 371 CMVGRMDEARELLHEMEAKGLKPDVVTYSTIISA 404



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 113/259 (43%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ LI A       ++A  IL+ M   G  P++VT   LV  + +AG +D A+   
Sbjct: 149 NVYTYNILIRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLV 208

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G +P+   +NSM+     AG+ +    + D M+  G+      Y  L+  + + 
Sbjct: 209 GMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKA 268

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G    A  +   M  +   P + + T L+    +AG+ + A +    M   G + ++   
Sbjct: 269 GCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTF 328

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I  + KK  LD AL  +  + +   +P    Y  L++    +  ++EA +LL ++  
Sbjct: 329 TALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEA 388

Query: 496 LGEAPPFKIQVSLCDMYAR 514
            G  P      ++   Y +
Sbjct: 389 KGLKPDVVTYSTIISAYCK 407



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/258 (21%), Positives = 113/258 (43%), Gaps = 15/258 (5%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           +  + +V  YS +I A+ K      A  + ++M E G++PD +T + L+ +  +   L  
Sbjct: 389 KGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSD 448

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A   F+++   G QPD+  Y S+I  +   G  +  +SL D M+ +G+      Y  L+ 
Sbjct: 449 AHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLIN 508

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPT---------------LESCTLLVEAYGQAGDPDQ 415
             ++      A Q+   +  EE  P                L+S   L++ +   G  ++
Sbjct: 509 GLSKSARAMEAQQLLFKLYHEEPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNE 568

Query: 416 ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
           A   +  M+      D    + +I  + +   + KAL+   ++ + GF P   +   L+ 
Sbjct: 569 ADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQRGFAPNSTSTISLIR 628

Query: 476 WLGRLQLINEAEQLLGKI 493
            L    ++ EA+Q++ ++
Sbjct: 629 GLFENGMVVEADQVIQQL 646



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 112/268 (41%), Gaps = 25/268 (9%)

Query: 220 PSRIDWINLLDRLREQ----NTQLYFK-VAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           P  I + +L+  L E+    +  + FK + +L L  + F      Y+ LID H KE  +E
Sbjct: 428 PDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFT-----YTSLIDGHCKEGNVE 482

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM- 333
            A  +  KM + G++PD+VT +VL++  SK+     A++    L      P    Y+++ 
Sbjct: 483 RALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEEPIPANTKYDALM 542

Query: 334 ----------IMAYVNAGQPKLGMSLVDMMITSGIERS----EEIYLALLRSFAQCGDVR 379
                     ++A +     K  M+  D +  S ++R+      +Y  L+    + G+V 
Sbjct: 543 HCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVM 602

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A      M    F P   S   L+    + G   +A      ++      D   + ++I
Sbjct: 603 KALSFHKQMLQRGFAPNSTSTISLIRGLFENGMVVEADQVIQQLLNCCSLADAEASKALI 662

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGP 467
                +  +D  L++L  + KDG  P P
Sbjct: 663 DLNLNEGNVDAVLDVLHGMAKDGLLPSP 690


>gi|302816960|ref|XP_002990157.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
 gi|300142012|gb|EFJ08717.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
          Length = 760

 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 125/271 (46%), Gaps = 1/271 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  Y+ +IDA +K      A RI ++M E G+ PD +T   L+    +A   +     F
Sbjct: 189 NLVVYNAVIDACSKGGDYPTALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDRIF 248

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMI-TSGIERSEEIYLALLRSFAQ 374
             +   G   D   YN++I  Y   GQ  LG +L++ M  +SGIE S   Y  ++  +A+
Sbjct: 249 AEMEERGIARDDVTYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAK 308

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
            G    A  +   MR +  +P       +V+ + + G+ D+A S    M   G   D   
Sbjct: 309 LGLAHEAIALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVT 368

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
             +++ +YGK+    +A++LL E+++ G  P   TY+ L+D   +     +A  L   + 
Sbjct: 369 YNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVK 428

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
           + G  P   +  +L D   + G   +AL  L
Sbjct: 429 KAGLQPDVVLYSTLVDGCCKNGSPDEALALL 459



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 153/352 (43%), Gaps = 22/352 (6%)

Query: 213 EWKELLQPSRIDW-------INLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLI 264
           +W  L Q  R  W       I+ L RL R    QL F  A        F  NV  YS LI
Sbjct: 108 DWMVLQQNLRSQWDKVTSTIISSLGRLGRSDWAQLIFDRA----VGAGFGNNVFVYSSLI 163

Query: 265 DAHAKENCLEDAERILKKMNENGIV--PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG 322
            A+ +   L  A  I + M    +V  P++V    ++   SK G+   A   F  +   G
Sbjct: 164 CAYGRSGKLAKAVEIFEAMK---VVCKPNLVVYNAVIDACSKGGDYPTALRIFREMLEQG 220

Query: 323 FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR-GA 381
             PD+  +N++I A   A + +    +   M   GI R +  Y  L+ ++ + G +  GA
Sbjct: 221 MSPDRITFNTLISAAGRANRWEECDRIFAEMEERGIARDDVTYNTLIATYCRGGQMHLGA 280

Query: 382 GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441
             +  + +    +P++ + + +++ Y + G   +A + F  M     +PD  C  +M+  
Sbjct: 281 ALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQNVEPDGICYNTMVDI 340

Query: 442 YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
           + +    D+A ++   +E+ GF     TY  L+D  G+     EA  LL ++ + G +P 
Sbjct: 341 HARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGASPN 400

Query: 502 FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGG 551
                +L D Y + G  + A+    F + KK  + PD   +  +++G    G
Sbjct: 401 ILTYSALIDAYCKHGFHRDAMAL--FQDVKKAGLQPDVVLYSTLVDGCCKNG 450



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 116/256 (45%), Gaps = 1/256 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL- 318
           ++ LI A  + N  E+ +RI  +M E GI  D VT   L+  Y + G +       E++ 
Sbjct: 228 FNTLISAAGRANRWEECDRIFAEMEERGIARDDVTYNTLIATYCRGGQMHLGAALMETMA 287

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
           +S G +P    Y++MI  Y   G     ++L   M    +E     Y  ++   A+ G+ 
Sbjct: 288 KSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQNVEPDGICYNTMVDIHARLGNF 347

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             A  I   M    F   + +   L+++YG+ G   +A S  + M + G  P+    +++
Sbjct: 348 DEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSAL 407

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           I AY K      A+ L  +++K G +P    Y+ LVD   +    +EA  LL ++++ G 
Sbjct: 408 IDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGI 467

Query: 499 APPFKIQVSLCDMYAR 514
            P      SL D Y R
Sbjct: 468 RPNVITYNSLLDAYGR 483



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 147/346 (42%), Gaps = 24/346 (6%)

Query: 260 YSKLIDAHAKENCLEDAERILKKM-NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318
           Y+ LI  + +   +     +++ M   +GI P ++T + ++  Y+K G    A   F+ +
Sbjct: 263 YNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEM 322

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
           R+   +PD   YN+M+  +   G      S+   M  +G  +    Y ALL S+ + G  
Sbjct: 323 RNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKF 382

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
           R A  +   M+     P + + + L++AY + G    A + F  + + G +PD    +++
Sbjct: 383 REAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTL 442

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE------QLLGK 492
           +    K    D+AL LL E+  +G  P   TY  L+D  GR  L+           LL +
Sbjct: 443 VDGCCKNGSPDEALALLEEMADNGIRPNVITYNSLLDAYGRQCLMVRKNFPKLRFFLLPR 502

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAG 550
           ++ L +      Q SL D   +  +   A +   F E  K  + P+   F  I+N     
Sbjct: 503 VTMLLKPSVDYDQQSLVDPKQKQALVLAAARV--FREMAKNGVKPNVVTFSSILNACSHC 560

Query: 551 GFLQDAQ-----------RVHGLMEAQGFAASERLKVALISSQTFN 585
             ++DA            RV+G+    G     R++V   +   FN
Sbjct: 561 ASVEDASSLLEAMRVFDGRVYGV--THGLLMGFRIRVWRDAETLFN 604



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 99/204 (48%)

Query: 245 ELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK 304
           E +      + +V  YS +ID +AK     +A  + ++M    + PD +    +V ++++
Sbjct: 284 ETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQNVEPDGICYNTMVDIHAR 343

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
            GN D A     ++   GF  D   YN+++ +Y   G+ +  MSL++ M   G   +   
Sbjct: 344 LGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILT 403

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
           Y AL+ ++ + G  R A  +   ++    QP +   + LV+   + G PD+A +  + M 
Sbjct: 404 YSALIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMA 463

Query: 425 RLGHKPDDRCTASMIAAYGKKNLL 448
             G +P+     S++ AYG++ L+
Sbjct: 464 DNGIRPNVITYNSLLDAYGRQCLM 487


>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
 gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 156/354 (44%), Gaps = 6/354 (1%)

Query: 239 LYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVL 298
           L  KV E +L + + +  +  Y+ LI+A+  E  +++A ++L +M   G+ PD  T  V+
Sbjct: 97  LALKVFEELLKDNNCKPTLITYTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVI 156

Query: 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
                K G +DRA E   +L S G +PD   YN ++ A +N G+   G   +  + + G 
Sbjct: 157 TRGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGC 216

Query: 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418
           E +   Y  L+ S  + G +  +  +  +M+ +   P       L+ A+ + G  D A  
Sbjct: 217 EPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIE 276

Query: 419 NFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLG 478
             D MI  G  PD     +++AA  K    D A+ +  +L++ G  P  ++Y  +   L 
Sbjct: 277 FLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTM---LS 333

Query: 479 RLQLINEAEQLLGKISEL---GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQM 535
            L    +  + LG IS++   G  P      SL     R G+  +A+  L  + + + Q 
Sbjct: 334 ALWSSGDRYRALGMISQMLSKGIDPDVITYNSLISCLCRDGMVDEAIGLLADMLSGRFQP 393

Query: 536 GPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQ 589
               ++ ++ GL     + DA  V   M   G   +E     LI    F+  R 
Sbjct: 394 NIVSYKTVLLGLCKAHRIDDAIEVLAAMIENGCQPNETTYTLLIEGIGFSGSRT 447



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/345 (22%), Positives = 142/345 (41%), Gaps = 40/345 (11%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E+  + +V  Y+ +I    K N +E A+ +L +M   G  PD+VT  +++  +   G +D
Sbjct: 37  EKHGKPDVFAYNAVISGFCKANRIESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKID 96

Query: 310 RAKEAFES-LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLAL 368
            A + FE  L+ +  +P    Y  +I AY+  G     + L+D M++ G+E     Y  +
Sbjct: 97  LALKVFEELLKDNNCKPTLITYTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVI 156

Query: 369 LRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR----------- 417
            R   + G V  A +    +     +P + +  +L+ A    G  D+             
Sbjct: 157 TRGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGC 216

Query: 418 --SNFDYMIRL----------------------GHKPDDRCTASMIAAYGKKNLLDKALN 453
             +   Y I +                      G  PD  C   +IAA+ ++  LD A+ 
Sbjct: 217 EPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIE 276

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
            L  +  DGF P    Y  ++  L +    + A ++ GK+ E+G  P      ++     
Sbjct: 277 FLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSALW 336

Query: 514 RAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDA 556
            +G   +AL  +  + +K   + PD   +  +I+ L   G + +A
Sbjct: 337 SSGDRYRALGMISQMLSK--GIDPDVITYNSLISCLCRDGMVDEA 379



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/296 (22%), Positives = 126/296 (42%), Gaps = 24/296 (8%)

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL 349
           PD++  T L+  +  + N+D+A      L  HG +PD   YN++I  +  A + +   ++
Sbjct: 8   PDVILCTKLIKGFFNSRNIDKATRVMGILEKHG-KPDVFAYNAVISGFCKANRIESAKTV 66

Query: 350 VDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQIT-NIMRIEEFQPTLESCTLLVEAYG 408
           +D M   G       +  ++ +F   G +  A ++   +++    +PTL + T+L+EAY 
Sbjct: 67  LDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTILIEAYI 126

Query: 409 QAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPA 468
             G  D+A    D M+  G +PD      +     K+  +D+A   +  L   G +P   
Sbjct: 127 LEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPDVI 186

Query: 469 TYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFL 528
           TY +L+  L      +E E+ + +I   G  P       L     R G   K  +++  +
Sbjct: 187 TYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDG---KIEESVNLV 243

Query: 529 EAKKEQ-MGPDDFE------------------RIINGLLAGGFLQDAQRVHGLMEA 565
           +  KE+ + PD +                     ++ ++  GFL D    + +M A
Sbjct: 244 KVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCMICDGFLPDIVNYNTIMAA 299



 Score = 39.7 bits (91), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 21/87 (24%), Positives = 47/87 (54%), Gaps = 1/87 (1%)

Query: 388 MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447
           M  +++QP +  CT L++ +  + + D+A      + + G KPD     ++I+ + K N 
Sbjct: 1   MVAKDYQPDVILCTKLIKGFFNSRNIDKATRVMGILEKHG-KPDVFAYNAVISGFCKANR 59

Query: 448 LDKALNLLLELEKDGFEPGPATYTVLV 474
           ++ A  +L  +++ GF P   T+ +++
Sbjct: 60  IESAKTVLDRMKRKGFSPDVVTHNIMI 86


>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 111/224 (49%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ +I+   KE  L+ A     +M + GI+P++VT + ++    KA  +D+A E  
Sbjct: 198 DVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVL 257

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
            S+  +G  P+ + YNS++  Y ++GQPK  +  +  M + G+E     Y +L+    + 
Sbjct: 258 TSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKN 317

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G    A ++ + M     +P + +   L++ Y   G   +     D M+R G  P+    
Sbjct: 318 GRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVF 377

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
           + +I AY K+  +D+A+ +  ++ + G  P   TY  ++  L +
Sbjct: 378 SILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCK 421



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 89/383 (23%), Positives = 169/383 (44%), Gaps = 12/383 (3%)

Query: 195 TDKILSLEKEEDPSPLLAEWKELLQ----PSRIDWINLLDRLREQNTQLYFKVAELVLS- 249
           T  I    KE D       + E+L     P+ + + +++  L +   Q   K  E++ S 
Sbjct: 203 TTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCK--AQAMDKAMEVLTSM 260

Query: 250 -EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNL 308
            +     N R Y+ ++  +      ++A   LKKM+ +G+ PD+VT   L+    K G  
Sbjct: 261 VKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRC 320

Query: 309 DRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLAL 368
             A++ F+S+   G +P+   Y +++  Y   G       L+D+M+ +GI  +  ++  L
Sbjct: 321 TEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSIL 380

Query: 369 LRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH 428
           + ++A+ G V  A  + + MR +   P   +   ++    ++G  + A   F+ MI    
Sbjct: 381 ICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERL 440

Query: 429 KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQ 488
            P +    S+I +    +  DKA  L+LE+   G       +  ++D   +   + E+E+
Sbjct: 441 SPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEK 500

Query: 489 LLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIING 546
           L   +  +G  P      +L D Y  AG   +A + L  + +    M PD   +  +ING
Sbjct: 501 LFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVG--MKPDCVTYNTLING 558

Query: 547 LLAGGFLQDAQRVHGLMEAQGFA 569
                 ++DA  +   ME+ G +
Sbjct: 559 YCKISRMEDALVLFREMESSGVS 581



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 140/314 (44%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           +S LI A+AK+  ++ A  +  KM + G+ PD VT   ++ +  K+G ++ A   FE + 
Sbjct: 377 FSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMI 436

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
                P   VYNS+I +     +      L+  M+  GI      + +++ S  + G V 
Sbjct: 437 DERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVI 496

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            + ++ ++M     +P + + + L++ Y  AG  D+A      M+ +G KPD     ++I
Sbjct: 497 ESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLI 556

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             Y K + ++ AL L  E+E  G  P   TY +++  L + +    A++L   I+E G  
Sbjct: 557 NGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQ 616

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
                   +     +  +  +AL+    L     Q+    F  +I  LL  G   +A+ +
Sbjct: 617 LELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDL 676

Query: 560 HGLMEAQGFAASER 573
              + A G     R
Sbjct: 677 FAALSANGLVPDVR 690



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 99/218 (45%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++ +ID+H KE  + ++E++   M   G+ PDI+T + L+  Y  AG +D A +   S+ 
Sbjct: 482 FNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMV 541

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           S G +PD   YN++I  Y    + +  + L   M +SG+      Y  +L+   Q     
Sbjct: 542 SVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTA 601

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++   +     Q  L +  +++    +    D+A   F  +     + + R    MI
Sbjct: 602 AAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMI 661

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
            A  K    D+A +L   L  +G  P   TY+++ + L
Sbjct: 662 GALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENL 699



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 87/209 (41%), Gaps = 9/209 (4%)

Query: 240 YFKVAELVLSEESFQTNVR--------DYSKLIDAHAKENCLEDAERILKKMNENGIVPD 291
           + K   ++ SE+ F   VR         YS LID +     +++A ++L  M   G+ PD
Sbjct: 489 HCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPD 548

Query: 292 IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVD 351
            VT   L++ Y K   ++ A   F  + S G  PD   YN ++       +      L  
Sbjct: 549 CVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYV 608

Query: 352 MMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAG 411
            +  SG +     Y  +L    +      A ++   + + + Q    +  +++ A  + G
Sbjct: 609 GITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVG 668

Query: 412 DPDQARSNFDYMIRLGHKPDDRCTASMIA 440
             D+A+  F  +   G  PD R T S++A
Sbjct: 669 RNDEAKDLFAALSANGLVPDVR-TYSLMA 696



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 92/216 (42%), Gaps = 11/216 (5%)

Query: 187 ITGKCKLITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKVAE 245
           I G CK+         + ED   L  E +   + P  I +  +L  L +       K   
Sbjct: 556 INGYCKI--------SRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELY 607

Query: 246 LVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKA 305
           + ++E   Q  +  Y+ ++    K N  ++A R+ + +    +  +  T  +++    K 
Sbjct: 608 VGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKV 667

Query: 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
           G  D AK+ F +L ++G  PD + Y+ M    +  G  +    L   M  +G   +  + 
Sbjct: 668 GRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRML 727

Query: 366 LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCT 401
            +++R   Q GD+  AG  T +  I+E   +LE+ T
Sbjct: 728 NSIVRKLLQRGDITRAG--TYLFMIDEKHFSLEAST 761



 Score = 42.4 bits (98), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 53/252 (21%), Positives = 108/252 (42%), Gaps = 13/252 (5%)

Query: 325 PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQI 384
           P+   Y  ++ +   AG+  LG + +  +I  G       +  +L+    C D R +  +
Sbjct: 89  PNLCTYGILMGSCCCAGRLDLGFAALGNVIKKGFIVDAIAFTPMLKGL--CADKRTSDAM 146

Query: 385 TNIMR-IEEFQ--PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK--PDDRCTASMI 439
             ++R + +    P + S  +L++         +A      M   G    PD     ++I
Sbjct: 147 DIVLRRMTQLGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTTVI 206

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             + K+  LDKA     E+   G  P   TY+ ++  L + Q +++A ++L  + + G  
Sbjct: 207 NGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVM 266

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFL-EAKKEQMGPD--DFERIINGLLAGGFLQDA 556
           P  +   S+   Y  +G  K   +A+GFL +   + + PD   +  +++ L   G   +A
Sbjct: 267 PNCRTYNSIVHGYCSSGQPK---EAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEA 323

Query: 557 QRVHGLMEAQGF 568
           +++   M  +G 
Sbjct: 324 RKMFDSMTKRGL 335


>gi|357122970|ref|XP_003563186.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Brachypodium distachyon]
          Length = 675

 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 144/322 (44%), Gaps = 1/322 (0%)

Query: 261 SKLIDAHAKENCLEDAERILKKMNENG-IVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           + LI A      + +AE +  +    G I P       L+  Y K G+L  A++  + + 
Sbjct: 274 TALISALGGAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMS 333

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  PD+  Y+ ++ AY  AG+ +    L+  M   G++ S  ++  +L  F   GD +
Sbjct: 334 DCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQ 393

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  +   M     QP      ++++ +G+      A   F+ M   G +PD     ++I
Sbjct: 394 KAFAVLREMHASGVQPDRHFYNVMIDTFGKYNCLGHAMDAFNRMREEGIEPDVVTWNTLI 453

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            A+ K    D+A+ L  E+ +    PG  TY ++++ LG  +     E +L ++ E G  
Sbjct: 454 DAHRKGGRHDRAMELFEEMRESNCPPGTTTYNIMINLLGEQERWVGVETMLSEMKEQGLV 513

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P      +L D+Y R+G  K+A++ +  ++A   +  P  +  ++N     G    A  V
Sbjct: 514 PNIITYTTLVDVYGRSGRFKEAIECIEVMKADGLKPSPTMYHALVNAYAQRGLADHALNV 573

Query: 560 HGLMEAQGFAASERLKVALISS 581
              M A G  AS  +  +L+++
Sbjct: 574 VKAMRADGLEASTVVLNSLMNA 595



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 136/286 (47%), Gaps = 1/286 (0%)

Query: 245 ELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK 304
           E  L+ E  +   R Y+ L+  + K   L++AE++L +M++ G+ PD  T ++LV  Y++
Sbjct: 295 EFFLAGE-IKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSDCGVAPDEATYSLLVDAYTR 353

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
           AG  + A+   + + + G +P   V++ ++  + + G  +   +++  M  SG++     
Sbjct: 354 AGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMHASGVQPDRHF 413

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
           Y  ++ +F +   +  A    N MR E  +P + +   L++A+ + G  D+A   F+ M 
Sbjct: 414 YNVMIDTFGKYNCLGHAMDAFNRMREEGIEPDVVTWNTLIDAHRKGGRHDRAMELFEEMR 473

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
                P       MI   G++        +L E+++ G  P   TYT LVD  GR     
Sbjct: 474 ESNCPPGTTTYNIMINLLGEQERWVGVETMLSEMKEQGLVPNIITYTTLVDVYGRSGRFK 533

Query: 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEA 530
           EA + +  +   G  P   +  +L + YA+ G+   AL  +  + A
Sbjct: 534 EAIECIEVMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRA 579



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 125/288 (43%), Gaps = 15/288 (5%)

Query: 222 RIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILK 281
           R DW      LRE +                 Q +   Y+ +ID   K NCL  A     
Sbjct: 389 RGDWQKAFAVLREMHAS-------------GVQPDRHFYNVMIDTFGKYNCLGHAMDAFN 435

Query: 282 KMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAG 341
           +M E GI PD+VT   L+  + K G  DRA E FE +R     P    YN MI   +   
Sbjct: 436 RMREEGIEPDVVTWNTLIDAHRKGGRHDRAMELFEEMRESNCPPGTTTYNIMI-NLLGEQ 494

Query: 342 QPKLGM-SLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
           +  +G+ +++  M   G+  +   Y  L+  + + G  + A +   +M+ +  +P+    
Sbjct: 495 ERWVGVETMLSEMKEQGLVPNIITYTTLVDVYGRSGRFKEAIECIEVMKADGLKPSPTMY 554

Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
             LV AY Q G  D A +    M   G +       S++ A+G+   + +A ++L  +++
Sbjct: 555 HALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLMNAFGEDRRVVEAFSVLQFMKE 614

Query: 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSL 508
           +   P   TYT L+  L R++  ++   +  ++   G AP  K +  L
Sbjct: 615 NDLRPDVITYTTLMKALIRIEQFDKVPVIYEEMITSGCAPDRKARAML 662



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 112/229 (48%), Gaps = 4/229 (1%)

Query: 215 KELLQPSRIDWINLLDRLREQNTQLYFKVAELV--LSEESFQTNVRDYSKLIDAHAKENC 272
           +E ++P  + W  L+D  R+     + +  EL   + E +       Y+ +I+   ++  
Sbjct: 439 EEGIEPDVVTWNTLIDAHRKGGR--HDRAMELFEEMRESNCPPGTTTYNIMINLLGEQER 496

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
               E +L +M E G+VP+I+T T LV +Y ++G    A E  E +++ G +P   +Y++
Sbjct: 497 WVGVETMLSEMKEQGLVPNIITYTTLVDVYGRSGRFKEAIECIEVMKADGLKPSPTMYHA 556

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           ++ AY   G     +++V  M   G+E S  +  +L+ +F +   V  A  +   M+  +
Sbjct: 557 LVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLMNAFGEDRRVVEAFSVLQFMKEND 616

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441
            +P + + T L++A  +    D+    ++ MI  G  PD +  A + +A
Sbjct: 617 LRPDVITYTTLMKALIRIEQFDKVPVIYEEMITSGCAPDRKARAMLRSA 665



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 121/309 (39%), Gaps = 39/309 (12%)

Query: 278 RILKKMNENGIVPDIVT-STVLVHMYSKAGNLDRA--KEAFESLRSHGFQPDKKVYNSMI 334
           R+L  + E+G +PD+ + S +L  + +     D A  +     LR    +PD  +++ +I
Sbjct: 183 RLLALIREHGFLPDLASYSHLLASLLNTRDPPDAAILERLLGDLRESRLEPDAPLFSDLI 242

Query: 335 MAYVNAGQPKLGMSL------------------------------------VDMMITSGI 358
            A+  A  P   + L                                    ++  +   I
Sbjct: 243 SAFARAALPDAALDLLASAQAIGLTPRSNAVTALISALGGAGRVAEAEALFLEFFLAGEI 302

Query: 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418
           +     Y ALL+ + + G ++ A Q+ + M      P   + +LLV+AY +AG  + AR 
Sbjct: 303 KPRTRAYNALLKGYVKIGSLKNAEQVLDEMSDCGVAPDEATYSLLVDAYTRAGRWESARI 362

Query: 419 NFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLG 478
               M   G KP     + ++A +  +    KA  +L E+   G +P    Y V++D  G
Sbjct: 363 LLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMHASGVQPDRHFYNVMIDTFG 422

Query: 479 RLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
           +   +  A     ++ E G  P      +L D + + G   +A++    +       G  
Sbjct: 423 KYNCLGHAMDAFNRMREEGIEPDVVTWNTLIDAHRKGGRHDRAMELFEEMRESNCPPGTT 482

Query: 539 DFERIINGL 547
            +  +IN L
Sbjct: 483 TYNIMINLL 491


>gi|356523854|ref|XP_003530549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g16890, mitochondrial-like [Glycine max]
          Length = 678

 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 122/250 (48%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L  +   +NV  Y+ +I+   +   +++A    + M   G+VP++VT   L++ + K G 
Sbjct: 420 LISDGLISNVFSYNMIINCFCRAKLMDNASEAFRDMQVRGVVPNLVTFNTLINGHCKDGA 479

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D+A++  ESL  +G +PD   ++S++       + +  +     MI  GI  +  IY  
Sbjct: 480 IDKARKLLESLLENGLKPDIFTFSSIVDGLCQIKRTEEALECFTEMIEWGINPNAVIYNI 539

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+RS    GDV  + ++   M+ E   P   S   L++ + +    ++A+  FD M R G
Sbjct: 540 LIRSLCTIGDVARSVKLLRRMQKEGISPDTYSYNALIQIFCRMNKVEKAKKLFDSMSRSG 599

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD+   ++ I A  +   L++A  +   +E +G  P      +++  L + + + EA+
Sbjct: 600 LNPDNYTYSAFIEALSESGRLEEAKKMFYSMEANGCSPDSYICNLIIKILVQQEYVEEAQ 659

Query: 488 QLLGKISELG 497
            ++ +  + G
Sbjct: 660 NIIERCRQKG 669



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/290 (21%), Positives = 124/290 (42%), Gaps = 6/290 (2%)

Query: 281 KKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI-MAYVN 339
           + +   G  P      V++    K   L    + FE LR  G +     Y ++I + Y N
Sbjct: 348 RVLGRGGYFPGNSVFNVVMACLVKGAELRETCDVFEILRKQGVKAGIGAYLALIEVLYKN 407

Query: 340 AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLES 399
             + + G  +   +I+ G+  +   Y  ++  F +   +  A +    M++    P L +
Sbjct: 408 EWREE-GDRVYGQLISDGLISNVFSYNMIINCFCRAKLMDNASEAFRDMQVRGVVPNLVT 466

Query: 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELE 459
              L+  + + G  D+AR   + ++  G KPD    +S++    +    ++AL    E+ 
Sbjct: 467 FNTLINGHCKDGAIDKARKLLESLLENGLKPDIFTFSSIVDGLCQIKRTEEALECFTEMI 526

Query: 460 KDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEK 519
           + G  P    Y +L+  L  +  +  + +LL ++ + G +P      +L  ++ R    +
Sbjct: 527 EWGINPNAVIYNILIRSLCTIGDVARSVKLLRRMQKEGISPDTYSYNALIQIFCRMNKVE 586

Query: 520 KALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQDAQRVHGLMEAQG 567
           KA +   F    +  + PD+  +   I  L   G L++A+++   MEA G
Sbjct: 587 KAKKL--FDSMSRSGLNPDNYTYSAFIEALSESGRLEEAKKMFYSMEANG 634



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 69/336 (20%), Positives = 140/336 (41%), Gaps = 16/336 (4%)

Query: 232 LREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPD 291
           L   +  ++ +++ L LS  +     R Y+ LIDA  K N ++ A    ++M  +  V D
Sbjct: 159 LANYSAHVFCQISFLGLSPTT-----RLYNALIDALVKSNSIDLAYLKFQQMAADNCVAD 213

Query: 292 IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVD 351
             T   L+H   K G +D A      ++  G  P+   Y  +I  +  A +      + +
Sbjct: 214 RFTYNTLIHGVCKVGVVDEALRLVRQMKDKGHFPNVFTYTMLIEGFCIASRVDEAFGVFE 273

Query: 352 MMITSGIERSEEIYLALLRSFAQCGDVRGAGQ-ITNIMRIEEFQPTLE---SCTLLVEAY 407
            M  SG+  +E    AL+    +C D   A + ++  +  E+ Q  +    +C  ++  Y
Sbjct: 274 TMKDSGVYPNEATVRALVHGVFRCVDPSKALELLSEFLDREQEQERVHFMLACDTVL--Y 331

Query: 408 GQAGDPDQARSNFDYMIRL----GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGF 463
             A +   A+    ++ R+    G+ P +     ++A   K   L +  ++   L K G 
Sbjct: 332 CLANN-SMAKEMVVFLRRVLGRGGYFPGNSVFNVVMACLVKGAELRETCDVFEILRKQGV 390

Query: 464 EPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
           + G   Y  L++ L + +   E +++ G++   G          + + + RA +   A +
Sbjct: 391 KAGIGAYLALIEVLYKNEWREEGDRVYGQLISDGLISNVFSYNMIINCFCRAKLMDNASE 450

Query: 524 ALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           A   ++ +        F  +ING    G +  A+++
Sbjct: 451 AFRDMQVRGVVPNLVTFNTLINGHCKDGAIDKARKL 486



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 68/169 (40%), Gaps = 3/169 (1%)

Query: 293 VTSTVLVHMYSKAGNL---DRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL 349
           VT  +L  + +  G L   + +   F  +   G  P  ++YN++I A V +    L    
Sbjct: 142 VTEDLLCALLASWGRLGLANYSAHVFCQISFLGLSPTTRLYNALIDALVKSNSIDLAYLK 201

Query: 350 VDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409
              M           Y  L+    + G V  A ++   M+ +   P + + T+L+E +  
Sbjct: 202 FQQMAADNCVADRFTYNTLIHGVCKVGVVDEALRLVRQMKDKGHFPNVFTYTMLIEGFCI 261

Query: 410 AGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
           A   D+A   F+ M   G  P++    +++    +     KAL LL E 
Sbjct: 262 ASRVDEAFGVFETMKDSGVYPNEATVRALVHGVFRCVDPSKALELLSEF 310



 Score = 39.7 bits (91), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 69/160 (43%), Gaps = 4/160 (2%)

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
           F+ T +    L+ ++G+ G  + +   F  +  LG  P  R   ++I A  K N +D A 
Sbjct: 140 FRVTEDLLCALLASWGRLGLANYSAHVFCQISFLGLSPTTRLYNALIDALVKSNSIDLAY 199

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
               ++  D       TY  L+  + ++ +++EA +L+ ++ + G  P       L + +
Sbjct: 200 LKFQQMAADNCVADRFTYNTLIHGVCKVGVVDEALRLVRQMKDKGHFPNVFTYTMLIEGF 259

Query: 513 ARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
               I  +  +A G  E  K+  G    E  +  L+ G F
Sbjct: 260 C---IASRVDEAFGVFETMKDS-GVYPNEATVRALVHGVF 295


>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
 gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
          Length = 1115

 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 133/291 (45%), Gaps = 2/291 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +  E  + +++ +S L+ A  K   ++    +L++M   G+ P+I T T+ + +  + G 
Sbjct: 220 MVSEGLKPSLKTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGRDGK 279

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D A    + +   G  PD   Y  +I A   A +    M L   M +S  +  +  Y+ 
Sbjct: 280 IDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVT 339

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           LL  F+ CG +    +I   M  + + P + + T+LV A  +AG  ++A    D M + G
Sbjct: 340 LLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQG 399

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P+     ++I+   + N LD AL+L   +E  G EP   TY +L+D+ G+     +A 
Sbjct: 400 VLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKAL 459

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
           +   K+   G AP   I      +Y+ A + +       F E K   + PD
Sbjct: 460 ETFEKMKARGIAP--NIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPD 508



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 122/264 (46%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  L+D  +    L+  E+I  +M  +G  PD+VT T+LV+   KAG ++ A +  +++R
Sbjct: 337 YVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMR 396

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P+   YN++I   + A +    + L   M + G+E +   Y+ L+    + G   
Sbjct: 397 KQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPG 456

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A +    M+     P + +C   + +  + G   +A++ F+ +   G  PD      M+
Sbjct: 457 KALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMM 516

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             Y K   +D+A+ LL E+ K   EP       L+D L +   + EA Q+  ++ E+  A
Sbjct: 517 KCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLA 576

Query: 500 PPFKIQVSLCDMYARAGIEKKALQ 523
           P       L     + G  +KA+Q
Sbjct: 577 PTVVTYNILLAGLGKEGQIQKAVQ 600



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 148/319 (46%), Gaps = 14/319 (4%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ LIDA      L+DA  +  KM  +   PD VT   L+  +S  G+LD+ ++ +
Sbjct: 298 DVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIW 357

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             + + G+ PD   +  ++ A   AG+      L+D M   G+  +   Y  L+    + 
Sbjct: 358 TEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRA 417

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD-DRC 434
             +  A  + + M     +PT  +  LL++ +G++G P +A   F+ M   G  P+   C
Sbjct: 418 NRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVAC 477

Query: 435 TASM--IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
            AS+  +A  G+   L +A  +  EL+  G  P   TY +++    ++  ++EA +LL +
Sbjct: 478 NASLYSLAEMGR---LGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSE 534

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAG-- 550
           +S++   P   +  SL D   +AG  ++A Q       + E+M         N LLAG  
Sbjct: 535 MSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMF----CRMEEMNLAPTVVTYNILLAGLG 590

Query: 551 --GFLQDAQRVHGLMEAQG 567
             G +Q A ++   M   G
Sbjct: 591 KEGQIQKAVQLFESMNGHG 609



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 118/257 (45%)

Query: 260  YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
            Y+ LIDAH K   + +   +  +M   G  P+ +T  +++    K+  LD+A + + +L 
Sbjct: 828  YNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLV 887

Query: 320  SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
            S  F P    +  +I   + +G+      + D M+  G   +  IY  L+  + + G V 
Sbjct: 888  SGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVD 947

Query: 380  GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
             A +    M  E  +P L+S T+LV+    AG  D A   F+ + + G  PD      MI
Sbjct: 948  TACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMI 1007

Query: 440  AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
               G+    ++AL+L  E++  G  P   TY  L+  LG + +I EA ++  ++  +G  
Sbjct: 1008 NGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLK 1067

Query: 500  PPFKIQVSLCDMYARAG 516
            P      +L   Y  +G
Sbjct: 1068 PNVFTYNALIRGYTLSG 1084



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 124/284 (43%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++  +  + NV  Y  +  +      L  A   L+KM E G V +  +   L+H   ++G
Sbjct: 149 LMQRQIIRRNVDTYLIIFKSLFIRGGLRQAPSALEKMREAGFVLNAYSYNGLIHFLLQSG 208

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
               A E +  + S G +P  K ++++++A       K  M L++ M + G+  +   Y 
Sbjct: 209 FCKEALEVYRRMVSEGLKPSLKTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTYT 268

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
             +R   + G +  A +I   M  +   P + + T+L++A   A   D A   F  M   
Sbjct: 269 ICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSS 328

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
            HKPD     +++  +     LDK   +  E+E DG+ P   T+T+LV+ L +   INEA
Sbjct: 329 SHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEA 388

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEA 530
             LL  + + G  P      +L     RA     AL     +E+
Sbjct: 389 FDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMES 432



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 145/328 (44%), Gaps = 10/328 (3%)

Query: 262  KLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSH 321
            K++  H K +   +    +K   E G+ P +    +L+  + +  N++ A   FE ++S 
Sbjct: 762  KVLCKHKKTSVARNV--FVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSA 819

Query: 322  GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGA 381
            G  PD   YNS+I A+  +G+      L D M+T G + +   Y  ++ +  +   +  A
Sbjct: 820  GCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKA 879

Query: 382  GQITNIMRIEEFQPTLESCTL--LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
              +   +   +F PT   CT   L++   ++G  D A   FD M+  G +P+      ++
Sbjct: 880  MDLYYNLVSGDFSPT--PCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILV 937

Query: 440  AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
              YGK   +D A      + K+G  P   +YT+LVD L     +++A     K+ + G  
Sbjct: 938  NGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLD 997

Query: 500  PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQ 557
            P       + +   R+   ++AL    F E +   + PD   +  +I  L   G +++A 
Sbjct: 998  PDLVAYNLMINGLGRSQRTEEALSL--FHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAG 1055

Query: 558  RVHGLMEAQGFAASERLKVALISSQTFN 585
            +++  ++  G   +     ALI   T +
Sbjct: 1056 KIYEELQFIGLKPNVFTYNALIRGYTLS 1083



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/370 (21%), Positives = 161/370 (43%), Gaps = 11/370 (2%)

Query: 193 LITDKILSLEKEEDPSPLLAEWKELLQ-PSRIDWINLLDRLREQNTQLYFKVAELVLSE- 250
           ++ D + +  K +D   L  + K     P ++ ++ LLD+  +     +    E + +E 
Sbjct: 304 VLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCG---HLDKVEKIWTEM 360

Query: 251 --ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNL 308
             + +  +V  ++ L++A  K   + +A  +L  M + G++P++ T   L+    +A  L
Sbjct: 361 EADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRL 420

Query: 309 DRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLAL 368
           D A + F ++ S G +P    Y  +I  +  +G P   +   + M   GI  +     A 
Sbjct: 421 DDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNAS 480

Query: 369 LRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH 428
           L S A+ G +  A  + N ++     P   +  ++++ Y + G  D+A      M ++  
Sbjct: 481 LYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQC 540

Query: 429 KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQ 488
           +PD     S+I    K   +++A  +   +E+    P   TY +L+  LG+   I +A Q
Sbjct: 541 EPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQ 600

Query: 489 LLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIING 546
           L   ++  G +P      +L D   +      AL+   F +       PD   F  II+G
Sbjct: 601 LFESMNGHGCSPNTITFNTLLDCLCKNDEVDLALKM--FYKMTTMNCRPDVLTFNTIIHG 658

Query: 547 LLAGGFLQDA 556
            +    +++A
Sbjct: 659 FIKQNQIKNA 668



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/259 (22%), Positives = 115/259 (44%)

Query: 250  EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
            E   +  ++ Y+ LID   + + +E A  + ++M   G  PD  T   L+  + K+G ++
Sbjct: 783  ELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKIN 842

Query: 310  RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
               + ++ + + G +P+   YN +I   V + +    M L   +++     +   +  L+
Sbjct: 843  ELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLI 902

Query: 370  RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
                + G +  A ++ + M     +P      +LV  YG+ G  D A   F  M++ G +
Sbjct: 903  DGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIR 962

Query: 430  PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
            PD +    ++        +D AL+   +L++ G +P    Y ++++ LGR Q   EA  L
Sbjct: 963  PDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSL 1022

Query: 490  LGKISELGEAPPFKIQVSL 508
              ++   G  P      SL
Sbjct: 1023 FHEMQNRGIVPDLYTYNSL 1041



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 103/252 (40%), Gaps = 4/252 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  LID H K      A    +KM   GI P+IV     ++  ++ G L  AK  F  L+
Sbjct: 442 YILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELK 501

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           S G  PD   YN M+  Y   GQ    + L+  M     E    +  +L+ +  + G V 
Sbjct: 502 SSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVE 561

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A Q+   M      PT+ +  +L+   G+ G   +A   F+ M   G  P+     +++
Sbjct: 562 EAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLL 621

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
               K + +D AL +  ++      P   T+  ++    +   I  A  L  ++ +L   
Sbjct: 622 DCLCKNDEVDLALKMFYKMTTMNCRPDVLTFNTIIHGFIKQNQIKNAIWLFHQMKKLLRP 681

Query: 500 PPFKIQVSLCDM 511
                 V+LC +
Sbjct: 682 D----HVTLCTL 689



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 71/328 (21%), Positives = 134/328 (40%), Gaps = 16/328 (4%)

Query: 266 AHAKENC------------LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
            H  E C            +ED   +   M    I  ++ T  ++       G L +A  
Sbjct: 121 VHTTETCNHMLEILRVHRRVEDMAFVFDLMQRQIIRRNVDTYLIIFKSLFIRGGLRQAPS 180

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
           A E +R  GF  +   YN +I   + +G  K  + +   M++ G++ S + + AL+ +  
Sbjct: 181 ALEKMREAGFVLNAYSYNGLIHFLLQSGFCKEALEVYRRMVSEGLKPSLKTFSALMVASG 240

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           +  +++    +   M     +P + + T+ +   G+ G  D+A      M   G  PD  
Sbjct: 241 KRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVV 300

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
               +I A      LD A+ L  +++    +P   TY  L+D       +++ E++  ++
Sbjct: 301 TYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEM 360

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGG 551
              G AP       L +   +AG   +A   L  +  +K+ + P+   +  +I+GLL   
Sbjct: 361 EADGYAPDVVTFTILVNALCKAGRINEAFDLLDTM--RKQGVLPNLHTYNTLISGLLRAN 418

Query: 552 FLQDAQRVHGLMEAQGFAASERLKVALI 579
            L DA  +   ME+ G   +    + LI
Sbjct: 419 RLDDALDLFSNMESLGVEPTAYTYILLI 446



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 81/172 (47%)

Query: 260  YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
            Y+ L++ + K   ++ A    K+M + GI PD+ + T+LV +   AG +D A   FE L+
Sbjct: 933  YNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLK 992

Query: 320  SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
              G  PD   YN MI     + + +  +SL   M   GI      Y +L+ +    G + 
Sbjct: 993  QAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIE 1052

Query: 380  GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
             AG+I   ++    +P + +   L+  Y  +G+ + A   +  M+  G  P+
Sbjct: 1053 EAGKIYEELQFIGLKPNVFTYNALIRGYTLSGNSELAYGIYKKMMVGGCDPN 1104



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 101/261 (38%), Gaps = 45/261 (17%)

Query: 219  QPSRIDWINLLDRLREQN-----TQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCL 273
            +P+ I +  ++  L + N       LY+      L    F      +  LID   K   L
Sbjct: 857  KPNTITYNMVISNLVKSNRLDKAMDLYYN-----LVSGDFSPTPCTFGPLIDGLLKSGRL 911

Query: 274  EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
            +DA  +   M   G  P+     +LV+ Y K G++D A E F+ +   G +PD K Y   
Sbjct: 912  DDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYT-- 969

Query: 334  IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
                           LVD++  +G  R ++  L       Q G                 
Sbjct: 970  --------------ILVDILCIAG--RVDDA-LHYFEKLKQAG----------------L 996

Query: 394  QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
             P L +  L++   G++   ++A S F  M   G  PD     S+I   G   ++++A  
Sbjct: 997  DPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGK 1056

Query: 454  LLLELEKDGFEPGPATYTVLV 474
            +  EL+  G +P   TY  L+
Sbjct: 1057 IYEELQFIGLKPNVFTYNALI 1077



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 68/149 (45%), Gaps = 8/149 (5%)

Query: 215  KELLQPSRIDWINLLDRL----REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKE 270
            KE ++P    +  L+D L    R  +   YF+     L +     ++  Y+ +I+   + 
Sbjct: 958  KEGIRPDLKSYTILVDILCIAGRVDDALHYFEK----LKQAGLDPDLVAYNLMINGLGRS 1013

Query: 271  NCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVY 330
               E+A  +  +M   GIVPD+ T   L+      G ++ A + +E L+  G +P+   Y
Sbjct: 1014 QRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKPNVFTY 1073

Query: 331  NSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
            N++I  Y  +G  +L   +   M+  G +
Sbjct: 1074 NALIRGYTLSGNSELAYGIYKKMMVGGCD 1102



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 31/149 (20%), Positives = 69/149 (46%)

Query: 248  LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
            + +E  + +++ Y+ L+D       ++DA    +K+ + G+ PD+V   ++++   ++  
Sbjct: 956  MVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQR 1015

Query: 308  LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
             + A   F  +++ G  PD   YNS+I+     G  +    + + +   G++ +   Y A
Sbjct: 1016 TEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKPNVFTYNA 1075

Query: 368  LLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
            L+R +   G+   A  I   M +    P 
Sbjct: 1076 LIRGYTLSGNSELAYGIYKKMMVGGCDPN 1104


>gi|302782654|ref|XP_002973100.1| hypothetical protein SELMODRAFT_442013 [Selaginella moellendorffii]
 gi|300158853|gb|EFJ25474.1| hypothetical protein SELMODRAFT_442013 [Selaginella moellendorffii]
          Length = 674

 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 128/267 (47%), Gaps = 3/267 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           ++    Q +   +S LI+   +    E+A +  ++M   GIVPD VT   ++ MY + G 
Sbjct: 169 MTGRGIQPDNYTFSTLINCAKRCRQPEEALKWFERMKSEGIVPDEVTYNSVIDMYGRVGR 228

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           ++ A E +E L+S  ++ D   Y ++   Y  AG  +  + LV  M  SG   +  I   
Sbjct: 229 VNEAVELYEKLKSVNWKLDTVTYGAIANVYARAGDYQSIIQLVQEMRDSGSSPNAVIMNT 288

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+ + ++ G V  A ++ N MR     PT  + ++LVE Y + G  DQA   ++ +   G
Sbjct: 289 LMGTLSKAGKVNQAKKVFNEMRTSGVSPTPVTLSILVEMYTRVGAYDQAFEVYETLKTEG 348

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            K D     S++ A  +   +++A ++L E+++ G  P   TY   ++      +++ A 
Sbjct: 349 WKCDVAVYNSLMKACVEGGRVEQAEDILKEMKRAGCNPDHLTYRTAMNTYATKGMVDPAR 408

Query: 488 QLLGKISELG---EAPPFKIQVSLCDM 511
           ++  K+  L    + P F + +  C +
Sbjct: 409 RMFDKVVALNGKPDTPLFTVMIRACKL 435



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 103/201 (51%), Gaps = 1/201 (0%)

Query: 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320
           + L+   +K   +  A+++  +M  +G+ P  VT ++LV MY++ G  D+A E +E+L++
Sbjct: 287 NTLMGTLSKAGKVNQAKKVFNEMRTSGVSPTPVTLSILVEMYTRVGAYDQAFEVYETLKT 346

Query: 321 HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRG 380
            G++ D  VYNS++ A V  G+ +    ++  M  +G       Y   + ++A  G V  
Sbjct: 347 EGWKCDVAVYNSLMKACVEGGRVEQAEDILKEMKRAGCNPDHLTYRTAMNTYATKGMVDP 406

Query: 381 AGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG-HKPDDRCTASMI 439
           A ++ + +     +P     T+++ A   AG+ +QA   FD M+  G   PD+R +  ++
Sbjct: 407 ARRMFDKVVALNGKPDTPLFTVMIRACKLAGEIEQASKIFDEMMESGCCSPDERVSGMLL 466

Query: 440 AAYGKKNLLDKALNLLLELEK 460
           +        D+ L +L  L+K
Sbjct: 467 SCMAMAKNDDERLAILDCLDK 487



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/268 (19%), Positives = 116/268 (43%), Gaps = 7/268 (2%)

Query: 306 GNLDRAKEA---FESLRSHG--FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
            N++R ++A   FE L++    ++ ++  YN M+    N  Q +L   LV+ M   GI+ 
Sbjct: 117 NNINRWEKALAFFEWLKARPELYEINRYTYNVMLKILRNGRQLELSEKLVEEMTGRGIQP 176

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
               +  L+    +C     A +    M+ E   P   +   +++ YG+ G  ++A   +
Sbjct: 177 DNYTFSTLINCAKRCRQPEEALKWFERMKSEGIVPDEVTYNSVIDMYGRVGRVNEAVELY 236

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
           + +  +  K D     ++   Y +       + L+ E+   G  P       L+  L + 
Sbjct: 237 EKLKSVNWKLDTVTYGAIANVYARAGDYQSIIQLVQEMRDSGSSPNAVIMNTLMGTLSKA 296

Query: 481 QLINEAEQLLGKISELGEAP-PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD 539
             +N+A+++  ++   G +P P  + + L +MY R G   +A +    L+ +  +     
Sbjct: 297 GKVNQAKKVFNEMRTSGVSPTPVTLSI-LVEMYTRVGAYDQAFEVYETLKTEGWKCDVAV 355

Query: 540 FERIINGLLAGGFLQDAQRVHGLMEAQG 567
           +  ++   + GG ++ A+ +   M+  G
Sbjct: 356 YNSLMKACVEGGRVEQAEDILKEMKRAG 383


>gi|410109913|gb|AFV61036.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           aristata]
          Length = 431

 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 121/261 (46%), Gaps = 6/261 (2%)

Query: 218 LQPSRIDWINLLD---RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           L+PS + +  L++   RL + +     K A L       Q +V  YS LI+   KE+ ++
Sbjct: 173 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLA---SGVQPDVYTYSVLINGLCKESKMD 229

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           DA  +  +M   G+VP+ VT T L+  + K G +D A E ++ + S    PD   YN++I
Sbjct: 230 DANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLI 289

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
                 G  K    L+D M   G++  +  Y  L+    + GD+  A +    M  E  +
Sbjct: 290 YGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIR 349

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
               + T L+    Q G    A      M+ +G KPD R    +I  + KK  + K   L
Sbjct: 350 LDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGXKL 409

Query: 455 LLELEKDGFEPGPATYTVLVD 475
           L E+++DG  P   TY VL++
Sbjct: 410 LKEMQRDGHVPSVVTYNVLMN 430



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 87/191 (45%)

Query: 285 ENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPK 344
           E G    +    +L+H + K G++  A+  F+++   G +P    YN+++  Y+  G   
Sbjct: 135 ECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 194

Query: 345 LGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
            G  L   M+ SG++     Y  L+    +   +  A ++ + M ++   P   + T L+
Sbjct: 195 EGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLI 254

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
           + + + G  D A   +  M+     PD     ++I    KK  L +A +L+ E+   G +
Sbjct: 255 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLK 314

Query: 465 PGPATYTVLVD 475
           P   TYT L+D
Sbjct: 315 PDKITYTTLID 325



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/267 (20%), Positives = 111/267 (41%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E  +  ++  ++ L+    K+  +  A+ +   + + G+ P +V+   L++ Y + G+LD
Sbjct: 135 ECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 194

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
                  ++ + G QPD   Y+ +I       +      L D M+  G+  +   +  L+
Sbjct: 195 EGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLI 254

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               + G V  A +I   M  +   P L +   L+    + GD  QA    D M   G K
Sbjct: 255 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLK 314

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     ++I    K+  LD A      + ++        YT L+  L +     +AE++
Sbjct: 315 PDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKM 374

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAG 516
           L ++  +G  P  +    + + + + G
Sbjct: 375 LREMLSVGLKPDARTYTMIINEFCKKG 401


>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Glycine max]
          Length = 1113

 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 148/350 (42%), Gaps = 41/350 (11%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  Y+  I    +   ++DA  ILK M + G  PD+VT TVL+     AG LD+AKE +
Sbjct: 261 NIYTYTICIRVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELY 320

Query: 316 ESLR--SH---------------------------------GFQPDKKVYNSMIMAYVNA 340
             +R  SH                                 G+ PD   Y  ++ A   +
Sbjct: 321 TKMRASSHKPDLVTYITLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKS 380

Query: 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
           G+      ++D+M   GI  +   Y  L+        +  A ++ N M      PT  S 
Sbjct: 381 GKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSY 440

Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPD-DRCTASM--IAAYGKKNLLDKALNLLLE 457
            L ++ YG+ GDP++A   F+ M + G  P    C AS+  +A  G+   + +A ++  +
Sbjct: 441 VLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACNASLYSLAEMGR---IREAKDIFND 497

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI 517
           +   G  P   TY +++    +   I++A +LL ++   G  P   +  SL D   +AG 
Sbjct: 498 IHNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGR 557

Query: 518 EKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
             +A Q  G L+  K       +  +I GL   G L  A  + G M+  G
Sbjct: 558 VDEAWQMFGRLKDLKLAPTVVTYNILITGLGKEGKLLKALDLFGSMKESG 607



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 127/270 (47%)

Query: 256  NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
            N+  Y+ L+DAH K   +++   +  +M   G  P+I+T  +++    K+ ++++A + +
Sbjct: 822  NIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIISALVKSNSINKALDLY 881

Query: 316  ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
              + S  F P    Y  +I   + AG+ +  M + + M     + +  IY  L+  F + 
Sbjct: 882  YEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILINGFGKA 941

Query: 376  GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
            G+V  A  +   M  E  +P L+S T+LVE     G  D A   F+ +   G  PD    
Sbjct: 942  GNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDPDTVSY 1001

Query: 436  ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
              MI   GK   L++AL+L  E++  G  P   TY  L+   G   ++++A ++  ++  
Sbjct: 1002 NLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAGKMFEELQF 1061

Query: 496  LGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
            +G  P      +L   ++++G + +A    
Sbjct: 1062 MGLEPNVFTYNALIRGHSKSGNKDRAFSVF 1091



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 85/374 (22%), Positives = 147/374 (39%), Gaps = 49/374 (13%)

Query: 220 PSRIDWINLLDRL-----REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           P  + +  L+D L      ++  +LY K     +   S + ++  Y  L+        LE
Sbjct: 295 PDVVTYTVLIDALCAAGKLDKAKELYTK-----MRASSHKPDLVTYITLMSKFGNYGDLE 349

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
             +R   +M  +G  PD+VT T+LV    K+G +D+A +  + +R  G  P+   YN++I
Sbjct: 350 TVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLI 409

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
              +N  +    + L + M + G+  +   Y+  +  + + GD   A      M+     
Sbjct: 410 SGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIM 469

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P++ +C   + +  + G   +A+  F+ +   G  PD      M+  Y K   +DKA  L
Sbjct: 470 PSIAACNASLYSLAEMGRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKATKL 529

Query: 455 LLELEKDGFEP---------------------------------GP--ATYTVLVDWLGR 479
           L E+  +G EP                                  P   TY +L+  LG+
Sbjct: 530 LTEMLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDLKLAPTVVTYNILITGLGK 589

Query: 480 LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD- 538
              + +A  L G + E G  P      +L D   +      AL+   F         PD 
Sbjct: 590 EGKLLKALDLFGSMKESGCPPNTVTFNALLDCLCKNDAVDLALKM--FCRMTIMNCSPDV 647

Query: 539 -DFERIINGLLAGG 551
             +  II GL+  G
Sbjct: 648 LTYNTIIYGLIKEG 661



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 87/382 (22%), Positives = 158/382 (41%), Gaps = 46/382 (12%)

Query: 198 ILSLEKEEDPSPLLAEWKELLQ-------PSRIDWINLLDRLREQNTQLYFKVAELVLSE 250
           I +L+   DP+  L+ +K + Q       P   +++    R+  +   + F V +L + +
Sbjct: 93  IGALKSISDPNSALSYFKMVSQLPNIVHTPETCNYMLEFLRVHGRVEDMAF-VFDL-MQK 150

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           +    N   Y  +  A + +  +  A   L KM + G V +  +   L++   + G    
Sbjct: 151 QVINRNPNTYLTIFKALSIKGGIRQAPFALGKMRQAGFVLNAYSYNGLIYFLLQPGFCKE 210

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A + ++ + S G +P  K Y+++++A          M L++ M T G+  +   Y   +R
Sbjct: 211 ALKVYKRMISEGLKPSMKTYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYTYTICIR 270

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
              + G +  A  I   M  E   P + + T+L++A   AG  D+A+  +  M    HKP
Sbjct: 271 VLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKP 330

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR----------- 479
           D     ++++ +G    L+       E+E DG+ P   TYT+LV+ L +           
Sbjct: 331 DLVTYITLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDML 390

Query: 480 ------------------------LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
                                   L+ ++EA +L   +  LG AP     V   D Y + 
Sbjct: 391 DVMRVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFIDYYGKL 450

Query: 516 GIEKKALQALGFLEAKKEQMGP 537
           G  +KAL    F + KK  + P
Sbjct: 451 GDPEKALDT--FEKMKKRGIMP 470



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 117/262 (44%)

Query: 260  YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
            Y+ L+D     N  E A ++  +M   G  P+I T  +L+  + K+  +D   E +  + 
Sbjct: 791  YNCLMDGLLGCNITEAALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELYNEML 850

Query: 320  SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
              G +P+   +N +I A V +      + L   +I+     +   Y  L+    + G   
Sbjct: 851  CRGCKPNIITHNIIISALVKSNSINKALDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSE 910

Query: 380  GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
             A +I   M   + +P      +L+  +G+AG+ + A   F  MI+ G +PD +    ++
Sbjct: 911  EAMKIFEEMPDYQCKPNCAIYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILV 970

Query: 440  AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
                    +D A++   EL+  G +P   +Y ++++ LG+ + + EA  L  ++   G +
Sbjct: 971  ECLFMTGRVDDAVHYFEELKLTGLDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGIS 1030

Query: 500  PPFKIQVSLCDMYARAGIEKKA 521
            P      +L   +  AG+  +A
Sbjct: 1031 PELYTYNALILHFGNAGMVDQA 1052



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 83/176 (47%)

Query: 256  NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
            N   Y+ LI+   K   +  A  + K+M + GI PD+ + T+LV      G +D A   F
Sbjct: 927  NCAIYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYF 986

Query: 316  ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
            E L+  G  PD   YN MI     + + +  +SL   M   GI      Y AL+  F   
Sbjct: 987  EELKLTGLDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNA 1046

Query: 376  GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
            G V  AG++   ++    +P + +   L+  + ++G+ D+A S F  M+ +G  P+
Sbjct: 1047 GMVDQAGKMFEELQFMGLEPNVFTYNALIRGHSKSGNKDRAFSVFKKMMIVGCSPN 1102



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 79/358 (22%), Positives = 138/358 (38%), Gaps = 10/358 (2%)

Query: 226 INLLDRLREQNTQL-YFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMN 284
           I  L  + + N+ L YFK+   + +            + +  H +   +ED   +   M 
Sbjct: 93  IGALKSISDPNSALSYFKMVSQLPNIVHTPETCNYMLEFLRVHGR---VEDMAFVFDLMQ 149

Query: 285 ENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPK 344
           +  I  +  T   +    S  G + +A  A   +R  GF  +   YN +I   +  G  K
Sbjct: 150 KQVINRNPNTYLTIFKALSIKGGIRQAPFALGKMRQAGFVLNAYSYNGLIYFLLQPGFCK 209

Query: 345 LGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNI---MRIEEFQPTLESCT 401
             + +   MI+ G++ S + Y AL+ +    G  R  G I ++   M     +P + + T
Sbjct: 210 EALKVYKRMISEGLKPSMKTYSALMVAL---GRRRDTGTIMDLLEEMETLGLRPNIYTYT 266

Query: 402 LLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD 461
           + +   G+AG  D A      M   G  PD      +I A      LDKA  L  ++   
Sbjct: 267 ICIRVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRAS 326

Query: 462 GFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKA 521
             +P   TY  L+   G    +   ++   ++   G AP       L +   ++G   +A
Sbjct: 327 SHKPDLVTYITLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQA 386

Query: 522 LQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
              L  +  +        +  +I+GLL    L +A  +   ME+ G A +    V  I
Sbjct: 387 FDMLDVMRVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFI 444



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/221 (21%), Positives = 96/221 (43%)

Query: 253  FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
            F      Y  LI    K    E+A +I ++M +    P+     +L++ + KAGN++ A 
Sbjct: 889  FSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILINGFGKAGNVNIAC 948

Query: 313  EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
            + F+ +   G +PD K Y  ++      G+    +   + +  +G++     Y  ++   
Sbjct: 949  DLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDPDTVSYNLMINGL 1008

Query: 373  AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
             +   +  A  + + M+     P L +   L+  +G AG  DQA   F+ +  +G +P+ 
Sbjct: 1009 GKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAGKMFEELQFMGLEPNV 1068

Query: 433  RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVL 473
                ++I  + K    D+A ++  ++   G  P   T+  L
Sbjct: 1069 FTYNALIRGHSKSGNKDRAFSVFKKMMIVGCSPNAGTFAQL 1109



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 106/251 (42%), Gaps = 19/251 (7%)

Query: 357  GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
            G   + E Y  L+     C     A ++   M+     P + +  LL++A+G++   D+ 
Sbjct: 783  GTHPTPESYNCLMDGLLGCNITEAALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRIDEL 842

Query: 417  RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476
               ++ M+  G KP+      +I+A  K N ++KAL+L  E+    F P P TY  L+  
Sbjct: 843  FELYNEMLCRGCKPNIITHNIIISALVKSNSINKALDLYYEIISGDFSPTPCTYGPLIGG 902

Query: 477  LGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG 536
            L +     EA ++  ++ +    P   I   L + + +AG    A     F    KE + 
Sbjct: 903  LLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILINGFGKAGNVNIACDL--FKRMIKEGIR 960

Query: 537  PD--DFERIINGLLAGGFLQDAQ------RVHGL--------MEAQGFAASERLKVAL-I 579
            PD   +  ++  L   G + DA       ++ GL        +   G   S RL+ AL +
Sbjct: 961  PDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDPDTVSYNLMINGLGKSRRLEEALSL 1020

Query: 580  SSQTFNRQRQP 590
             S+  NR   P
Sbjct: 1021 FSEMKNRGISP 1031



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 71/147 (48%)

Query: 250  EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
            +E  + +++ Y+ L++       ++DA    +++   G+ PD V+  ++++   K+  L+
Sbjct: 956  KEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDPDTVSYNLMINGLGKSRRLE 1015

Query: 310  RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
             A   F  +++ G  P+   YN++I+ + NAG       + + +   G+E +   Y AL+
Sbjct: 1016 EALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAGKMFEELQFMGLEPNVFTYNALI 1075

Query: 370  RSFAQCGDVRGAGQITNIMRIEEFQPT 396
            R  ++ G+   A  +   M I    P 
Sbjct: 1076 RGHSKSGNKDRAFSVFKKMMIVGCSPN 1102



 Score = 39.3 bits (90), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 37/87 (42%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
            V  Y+ LI    KE  L  A  +   M E+G  P+ VT   L+    K   +D A + F
Sbjct: 576 TVVTYNILITGLGKEGKLLKALDLFGSMKESGCPPNTVTFNALLDCLCKNDAVDLALKMF 635

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
             +      PD   YN++I   +  G+
Sbjct: 636 CRMTIMNCSPDVLTYNTIIYGLIKEGR 662


>gi|125558723|gb|EAZ04259.1| hypothetical protein OsI_26403 [Oryza sativa Indica Group]
          Length = 528

 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 144/304 (47%), Gaps = 3/304 (0%)

Query: 245 ELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK 304
           E  L+ E  +   R Y+ L+  + K   L++AE++L +M++ G+ PD  T ++LV  Y++
Sbjct: 148 EFFLAGE-IKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTR 206

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
           AG  + A+   + + + G +P   V++ ++  + + G+ +   +++  M  SG+      
Sbjct: 207 AGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHF 266

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
           Y  ++ +F +   +  A    + MR E  +P + +   L++A+ + G  D+A   FD M 
Sbjct: 267 YNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEM- 325

Query: 425 RLGHKPDDRCTAS-MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483
           R  + P    T + MI   G++   +    +L E+++ G  P   TYT LVD  GR    
Sbjct: 326 RESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRF 385

Query: 484 NEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERI 543
            EA   +  +   G  P   +  +L + YA+ G+   AL  +  + A   +        +
Sbjct: 386 KEAVDCIEAMKADGLKPSSTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSL 445

Query: 544 INGL 547
           IN  
Sbjct: 446 INAF 449



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 156/365 (42%), Gaps = 8/365 (2%)

Query: 220 PSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRD--YSKLIDAHAKENCLEDAE 277
           P   D I+   R R  +  L     EL+ S ++     R    + LI +      + +AE
Sbjct: 89  PLFSDLISAFARARLPDAAL-----ELLASAQAIGLTPRSNAVTALISSLGSARRVAEAE 143

Query: 278 RILKKMNENG-IVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
            +  +    G I P       L+  Y K G+L  A++  + +   G  PD+  Y+ ++ A
Sbjct: 144 ALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDA 203

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           Y  AG+ +    L+  M   G++ S  ++  +L  F   G+ + A  +   M     +P 
Sbjct: 204 YTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPD 263

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
                ++++ +G+      A   FD M   G +PD     ++I A+ K    D+A+ L  
Sbjct: 264 RHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFD 323

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
           E+ +     G  TY ++++ LG  Q     E +L ++ E G  P      +L D+Y R+G
Sbjct: 324 EMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSG 383

Query: 517 IEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKV 576
             K+A+  +  ++A   +     +  ++N     G    A  V   M A G  AS  +  
Sbjct: 384 RFKEAVDCIEAMKADGLKPSSTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLN 443

Query: 577 ALISS 581
           +LI++
Sbjct: 444 SLINA 448



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 111/249 (44%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           +S+++         + A  +L++M+ +G+ PD     V++  + K   L  A +AF+ +R
Sbjct: 232 FSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMR 291

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +PD   +N++I A+   G+    + L D M  S        Y  ++    +     
Sbjct: 292 EEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWE 351

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
           G   +   M+ +   P + + T LV+ YG++G   +A    + M   G KP      +++
Sbjct: 352 GVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSSTMYHALV 411

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            AY ++ L D ALN++  +  DG E        L++  G  + I EA  +L  + E G  
Sbjct: 412 NAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLR 471

Query: 500 PPFKIQVSL 508
           P      +L
Sbjct: 472 PDVITYTTL 480



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 110/249 (44%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +ID   K NCL  A     +M E GI PD+VT   L+  + K G  DRA E F+ +R
Sbjct: 267 YNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMR 326

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
                     YN MI       + +   +++  M   G+  +   Y  L+  + + G  +
Sbjct: 327 ESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFK 386

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A      M+ +  +P+      LV AY Q G  D A +    M   G +       S+I
Sbjct: 387 EAVDCIEAMKADGLKPSSTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLI 446

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            A+G+   + +A ++L  ++++G  P   TYT L+  L R++   +   +  ++   G A
Sbjct: 447 NAFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKALIRVEQFEKVPVIYEEMITSGCA 506

Query: 500 PPFKIQVSL 508
           P  K +  L
Sbjct: 507 PDRKARAML 515



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 113/244 (46%), Gaps = 21/244 (8%)

Query: 203 KEEDPSPLLAEWKELL----QPSRID-WINLLDRLREQNTQLYFKVAELVLSEESFQTNV 257
           +EE   P +  W  L+    +  R D  I L D +RE N  L                  
Sbjct: 291 REEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPL----------------GT 334

Query: 258 RDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFES 317
             Y+ +I+   +E   E  E +L +M E G+VP+I+T T LV +Y ++G    A +  E+
Sbjct: 335 TTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEA 394

Query: 318 LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
           +++ G +P   +Y++++ AY   G     +++V  M   G+E S  +  +L+ +F +   
Sbjct: 395 MKADGLKPSSTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAFGEDRR 454

Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
           +  A  +   M+    +P + + T L++A  +    ++    ++ MI  G  PD +  A 
Sbjct: 455 IAEAFSVLQFMKENGLRPDVITYTTLMKALIRVEQFEKVPVIYEEMITSGCAPDRKARAM 514

Query: 438 MIAA 441
           + +A
Sbjct: 515 LRSA 518



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 114/264 (43%), Gaps = 1/264 (0%)

Query: 285 ENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPK 344
           E+ + PD    + L+  +++A   D A E   S ++ G  P      ++I +  +A +  
Sbjct: 81  ESRLEPDAPLFSDLISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVA 140

Query: 345 LGMSL-VDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403
              +L ++  +   I+     Y ALL+ + + G ++ A Q+ + M      P   + +LL
Sbjct: 141 EAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLL 200

Query: 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGF 463
           V+AY +AG  + AR     M   G KP     + ++A +  +    KA  +L E+   G 
Sbjct: 201 VDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGV 260

Query: 464 EPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
            P    Y V++D  G+   +  A     ++ E G  P      +L D + + G   +A++
Sbjct: 261 RPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIE 320

Query: 524 ALGFLEAKKEQMGPDDFERIINGL 547
               +      +G   +  +IN L
Sbjct: 321 LFDEMRESNCPLGTTTYNIMINLL 344


>gi|326508346|dbj|BAJ99440.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 819

 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 108/217 (49%), Gaps = 2/217 (0%)

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQ--PDKKVYNSM 333
           A    + M    I PD  T  +++H   K G    A +   S+R    Q  PD   Y S+
Sbjct: 277 ATGYFEMMKGANIAPDTFTLNIVIHCLVKVGQHGDAVDLLNSMREKRVQCSPDVVTYTSI 336

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           I +Y   GQ +   ++ DMM+  G++ +   Y ALL ++A  G    A  I  +++    
Sbjct: 337 IHSYYVCGQVENCKAVFDMMVAEGVKPNIVSYNALLGAYASHGMHTEAFGIFKLLKQNGL 396

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
           +P + S T L+ AYG++  P++AR  F+ M +   KP+     ++I AYG   +  +A++
Sbjct: 397 RPDVVSYTTLLNAYGRSAQPEKAREVFNEMRKNSCKPNKVSYNALIDAYGSAGMFKEAIS 456

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           LL E+EKDG  P   + + L+   GR +   + + +L
Sbjct: 457 LLHEMEKDGIPPDVVSISTLLAACGRCRQTTKIDTVL 493



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 84/386 (21%), Positives = 157/386 (40%), Gaps = 74/386 (19%)

Query: 224 DWINLLDRLREQNTQL-------------YFKVAEL--------VLSEESFQTNVRDYSK 262
           D ++LL+ +RE+  Q              Y+   ++        ++  E  + N+  Y+ 
Sbjct: 311 DAVDLLNSMREKRVQCSPDVVTYTSIIHSYYVCGQVENCKAVFDMMVAEGVKPNIVSYNA 370

Query: 263 LIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG 322
           L+ A+A      +A  I K + +NG+ PD+V+ T L++ Y ++   ++A+E F  +R + 
Sbjct: 371 LLGAYASHGMHTEAFGIFKLLKQNGLRPDVVSYTTLLNAYGRSAQPEKAREVFNEMRKNS 430

Query: 323 FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMM-----------ITS--------------- 356
            +P+K  YN++I AY +AG  K  +SL+  M           I++               
Sbjct: 431 CKPNKVSYNALIDAYGSAGMFKEAISLLHEMEKDGIPPDVVSISTLLAACGRCRQTTKID 490

Query: 357 ---------GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAY 407
                    GIE +   Y + + S+   GD   A ++   M      P   +  +L+   
Sbjct: 491 TVLEAAKFRGIELNIVAYNSGIGSYLSFGDYEKALKLYATMMASNVNPDAVTYNILISGL 550

Query: 408 GQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGP 467
            + G   ++   F+ M+ L         +S+I +Y K++ L +A +  + ++  G  P  
Sbjct: 551 CKLGKYAESLKFFEDMVDLRIPLTKEVYSSLICSYVKQDKLAEAESTFINMKASGCFPDV 610

Query: 468 ATYTVLV-------DWLGRLQLINEAEQLLGKISELGEA--PPFKIQVSLCDMYARAGIE 518
            TYT ++        W     L  E E         G A  P   I  SL +   +    
Sbjct: 611 LTYTAMIQAYTDHGSWTSVWDLFKEME---------GNAILPDAIICSSLMEALNKGNQY 661

Query: 519 KKALQALGFLEAKKEQMGPDDFERII 544
            + LQ + F+  +  Q+    +  II
Sbjct: 662 GRVLQLMKFMHDQCIQLNQKAYFEII 687



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 81/370 (21%), Positives = 153/370 (41%), Gaps = 42/370 (11%)

Query: 249 SEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNL 308
           ++E++      Y  +I  HA+ N ++ A  +  +M E    PD      L++ +++AG  
Sbjct: 145 NQENYCARNDIYGMMIQLHARHNQVDQARGLFFEMQEWRCKPDADIYNSLINAHARAGLW 204

Query: 309 DRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER---SEEIY 365
             A    + +      P +  YN+++ A   AG  K  + L   MI +G+     +  I 
Sbjct: 205 RWAINIMDDMLRAAIPPSRATYNNVVNACGAAGNWKKALELCKKMIRNGVGPDLVTHNIV 264

Query: 366 LA--------------------------------LLRSFAQCGDVRGAGQITNIMRIEEF 393
           L+                                ++    + G    A  + N MR +  
Sbjct: 265 LSAFKNGFQYTKATGYFEMMKGANIAPDTFTLNIVIHCLVKVGQHGDAVDLLNSMREKRV 324

Query: 394 Q--PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
           Q  P + + T ++ +Y   G  +  ++ FD M+  G KP+     +++ AY    +  +A
Sbjct: 325 QCSPDVVTYTSIIHSYYVCGQVENCKAVFDMMVAEGVKPNIVSYNALLGAYASHGMHTEA 384

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQV-SLCD 510
             +   L+++G  P   +YT L++  GR     +A ++  ++ +     P K+   +L D
Sbjct: 385 FGIFKLLKQNGLRPDVVSYTTLLNAYGRSAQPEKAREVFNEMRK-NSCKPNKVSYNALID 443

Query: 511 MYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAA 570
            Y  AG+ K+A+  L   E +K+ + P D   I   L A G  +   ++  ++EA  F  
Sbjct: 444 AYGSAGMFKEAISLLH--EMEKDGI-PPDVVSISTLLAACGRCRQTTKIDTVLEAAKFRG 500

Query: 571 SERLKVALIS 580
            E   VA  S
Sbjct: 501 IELNIVAYNS 510



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 103/232 (44%), Gaps = 24/232 (10%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS LI ++ K++ L +AE     M  +G  PD++T T ++  Y+  G+     + F+ + 
Sbjct: 578 YSSLICSYVKQDKLAEAESTFINMKASGCFPDVLTYTAMIQAYTDHGSWTSVWDLFKEME 637

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
            +   PD  + +S++ A     Q    + L+  M    I+ +++ Y  ++ S +   D +
Sbjct: 638 GNAILPDAIICSSLMEALNKGNQYGRVLQLMKFMHDQCIQLNQKAYFEIIASCSMLRDWK 697

Query: 380 GAGQITNIMRIEEFQPTLESCTL-----LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
            A +I     IE    +L S ++     L+   G+ G  +        M++L +K    C
Sbjct: 698 TASEI-----IEHLDSSLPSISVGKLNYLLNFLGKCGKTES-------MMKLFYKMVSSC 745

Query: 435 TASMIAAYGK--KNLLD-----KALNLLLELEKDGFEPGPATYTVLVDWLGR 479
           +   ++ Y    +NLL      K + +L  +E  G  P    Y  ++ ++ R
Sbjct: 746 STVGLSTYKVLLRNLLAVGKWRKYVEVLQWMEDAGVRPTLYMYQNVLPYIWR 797



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/289 (19%), Positives = 114/289 (39%), Gaps = 42/289 (14%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVL--------- 298
           + + S + N   Y+ LIDA+      ++A  +L +M ++GI PD+V+ + L         
Sbjct: 426 MRKNSCKPNKVSYNALIDAYGSAGMFKEAISLLHEMEKDGIPPDVVSISTLLAACGRCRQ 485

Query: 299 --------------------------VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
                                     +  Y   G+ ++A + + ++ +    PD   YN 
Sbjct: 486 TTKIDTVLEAAKFRGIELNIVAYNSGIGSYLSFGDYEKALKLYATMMASNVNPDAVTYNI 545

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I      G+    +   + M+   I  ++E+Y +L+ S+ +   +  A      M+   
Sbjct: 546 LISGLCKLGKYAESLKFFEDMVDLRIPLTKEVYSSLICSYVKQDKLAEAESTFINMKASG 605

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P + + T +++AY   G        F  M      PD    +S++ A  K N   + L
Sbjct: 606 CFPDVLTYTAMIQAYTDHGSWTSVWDLFKEMEGNAILPDAIICSSLMEALNKGNQYGRVL 665

Query: 453 NLL-------LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
            L+       ++L +  +    A+ ++L DW    ++I   +  L  IS
Sbjct: 666 QLMKFMHDQCIQLNQKAYFEIIASCSMLRDWKTASEIIEHLDSSLPSIS 714



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/284 (20%), Positives = 115/284 (40%), Gaps = 5/284 (1%)

Query: 258 RDYSKLIDAHAKENCLEDAERILKKM-NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           R++  LI   A    LE A  +   M N+           +++ ++++   +D+A+  F 
Sbjct: 118 RNFPLLIREMAFSGSLEHAVYVFCWMKNQENYCARNDIYGMMIQLHARHNQVDQARGLFF 177

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
            ++    +PD  +YNS+I A+  AG  +  ++++D M+ + I  S   Y  ++ +    G
Sbjct: 178 EMQEWRCKPDADIYNSLINAHARAGLWRWAINIMDDMLRAAIPPSRATYNNVVNACGAAG 237

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
           + + A ++   M      P L +  +++ A+       +A   F+ M      PD     
Sbjct: 238 NWKKALELCKKMIRNGVGPDLVTHNIVLSAFKNGFQYTKATGYFEMMKGANIAPDTFTLN 297

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGP--ATYTVLVDWLGRLQLINEAEQLLGKIS 494
            +I    K      A++LL  + +   +  P   TYT ++        +   + +   + 
Sbjct: 298 IVIHCLVKVGQHGDAVDLLNSMREKRVQCSPDVVTYTSIIHSYYVCGQVENCKAVFDMMV 357

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
             G  P      +L   YA  G+  +A      L  K+  + PD
Sbjct: 358 AEGVKPNIVSYNALLGAYASHGMHTEAFGIFKLL--KQNGLRPD 399


>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
 gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
          Length = 737

 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 109/234 (46%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ L+DA  K   + DA  IL+ M E G  P++VT   L++ + K GN+D A   F
Sbjct: 235 SVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLF 294

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +  +   PD   YN +I  Y    +P+ G  L+  M+  G E +   Y  L+ S  + 
Sbjct: 295 NQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKS 354

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G    A  +  +M   + +P+  +  L+++ + + G  D A   F  M   G  PD    
Sbjct: 355 GKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTY 414

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
             MI+   + N +D A  LL  + + G  P   TY  +V  L +   ++EA ++
Sbjct: 415 NIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEV 468



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 105/231 (45%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           VL    +  +V   S LID   K   L+DAE++L++M  NG  PD+V  T+L+H + KA 
Sbjct: 471 VLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKAD 530

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            LD++   F  +   G  P    Y+ +I     + + + G  L+  M+  G+     +Y 
Sbjct: 531 QLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYT 590

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           +++    +      A ++  +M+     PT+ +  +LV+   +    D+A    + M   
Sbjct: 591 SVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESD 650

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
           G  PD     S+   + K    DKA  L   ++  G  P P  Y++L+  L
Sbjct: 651 GCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSRGCSPTPFMYSLLLTKL 701



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 128/284 (45%), Gaps = 6/284 (2%)

Query: 220 PSRIDWINLLDRLREQNTQLYFKVAELVLS---EESFQTNVRDYSKLIDAHAKENCLEDA 276
           PS I +  L+D L +         A L+L    E     NV  Y+ LI+   K   +++A
Sbjct: 234 PSVITYTILVDALCKSAR---ISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEA 290

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
             +  +M EN   PD+ T  +L+  Y K        +  + +  +G +P+   YN+++ +
Sbjct: 291 VVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDS 350

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
            V +G+     +L  MM+    + S   +  ++  F + G +  A ++  +M      P 
Sbjct: 351 LVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPD 410

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           + +  +++    +A   D AR   + M   G  PD     S+++   K + +D+A  +  
Sbjct: 411 IYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYE 470

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
            L   G+     T + L+D L + + +++AE+LL ++   G AP
Sbjct: 471 VLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAP 514



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 129/312 (41%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N   Y+ L+D+  K     DA  + + M      P   T  +++ M+ K G LD A E F
Sbjct: 340 NFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELF 399

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + +   G  PD   YN MI     A +      L++ M  +G       Y +++    + 
Sbjct: 400 QLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKA 459

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
             V  A ++  ++R   +   + +C+ L++   ++   D A      M R G  PD    
Sbjct: 460 SQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAY 519

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +I  + K + LDK+L    E+   G  P   TY++++D L +   + +   LL  + E
Sbjct: 520 TILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLE 579

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
            G  P   +  S+ D   ++    +A +    ++          +  +++ L     L +
Sbjct: 580 RGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDE 639

Query: 556 AQRVHGLMEAQG 567
           A  +  +ME+ G
Sbjct: 640 AIHLLEVMESDG 651



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 141/319 (44%), Gaps = 8/319 (2%)

Query: 239 LYFKVAELVLSEESFQ--------TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVP 290
           ++ KV +L L+ E FQ         ++  Y+ +I    + N ++DA ++L++M E G  P
Sbjct: 385 MFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPP 444

Query: 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV 350
           D+VT   +V    KA  +D A E +E LR+ G+  D    +++I     + +      L+
Sbjct: 445 DVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLL 504

Query: 351 DMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410
             M  +G       Y  L+  F +   +  +    + M  +   PT+ + +++++   ++
Sbjct: 505 REMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKS 564

Query: 411 GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATY 470
                       M+  G  PD     S+I    K +  D+A  L   +++ G  P   TY
Sbjct: 565 ARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTY 624

Query: 471 TVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEA 530
            VLVD L ++  ++EA  LL  +   G  P      S+ D + ++    KA +    +++
Sbjct: 625 NVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKS 684

Query: 531 KKEQMGPDDFERIINGLLA 549
           +     P  +  ++  L+A
Sbjct: 685 RGCSPTPFMYSLLLTKLVA 703



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 56/261 (21%), Positives = 111/261 (42%), Gaps = 4/261 (1%)

Query: 310 RAKEAFESLRSHGF---QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           +A+EA++  ++H      PD   Y+++I  +  A   +    L+D M   GI     +Y 
Sbjct: 147 KAQEAYDLFKNHRCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYN 206

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            +++     G V  A      M+     P++ + T+LV+A  ++     A    + MI  
Sbjct: 207 TIIKGLCDNGRVDSALVHYRDMQ-RNCAPSVITYTILVDALCKSARISDASLILEDMIEA 265

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G  P+     ++I  + K   +D+A+ L  ++ ++   P   TY +L+D   + +   + 
Sbjct: 266 GCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDG 325

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
            +LL ++ + G  P F    +L D   ++G    A      +  +  +     F  +I+ 
Sbjct: 326 AKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDM 385

Query: 547 LLAGGFLQDAQRVHGLMEAQG 567
               G L  A  +  LM  +G
Sbjct: 386 FCKVGQLDLAYELFQLMTDRG 406


>gi|297834714|ref|XP_002885239.1| EMB1270 [Arabidopsis lyrata subsp. lyrata]
 gi|297331079|gb|EFH61498.1| EMB1270 [Arabidopsis lyrata subsp. lyrata]
          Length = 1429

 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 136/293 (46%), Gaps = 3/293 (1%)

Query: 218 LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L+P  I +  LL    R+ N +   KV E  +     Q ++  Y+ +I  + +     +A
Sbjct: 293 LRPDAITYNTLLSACSRDSNLEGAVKVFE-DMEAHRCQPDLWTYNAMISVYGRCGLAAEA 351

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
           ER+  ++   G  PD VT   L++ +++  N ++ KE ++ ++  GF  D+  YN++I  
Sbjct: 352 ERLFIELELKGFSPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHM 411

Query: 337 YVNAGQPKLGMSLV-DMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
           Y   GQ  L + L  DM   SG       Y  L+ S  +      A  + + M     +P
Sbjct: 412 YGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRSVEAAALMSEMLDVGIKP 471

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
           TL++ + L+  Y +AG  ++A   F  M+R G KPD+   + M+    + N   KA  L 
Sbjct: 472 TLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWVLY 531

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSL 508
            ++  DG  P  + Y +++  L +    ++ ++ +  + EL    P +I   L
Sbjct: 532 RDMISDGHTPSHSLYELMILGLMKENRSDDVQKTIRDMEELCGMNPLEISSVL 584



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 99/430 (23%), Positives = 187/430 (43%), Gaps = 45/430 (10%)

Query: 190 KCKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLS 249
           + K +TDKILSL+  +  + +L      + P+  D+  ++  + +++ Q   +V E +  
Sbjct: 126 RVKFLTDKILSLKPNQFVADILDARPVQMTPT--DYCFVVKSVGQESWQRALEVFEWLNL 183

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
                 N R  + ++    + N    A  I  +  E  +   +     ++ +YS++G   
Sbjct: 184 RHWHSPNARMVAAILGVLGRWNQESLAVEIFTRA-EPTVGDRVQVYNAMMGVYSRSGKFS 242

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAG--QPKLGMSLVDMMITSGIERSEEIYLA 367
           +A+E  +++R  G  PD   +N++I A + +G   P L + L+DM+  SG+      Y  
Sbjct: 243 KAQELLDAMRQRGCVPDLISFNTLINARLKSGGLTPNLVVELLDMVRNSGLRPDAITYNT 302

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAG---------------- 411
           LL + ++  ++ GA ++   M     QP L +   ++  YG+ G                
Sbjct: 303 LLSACSRDSNLEGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFIELELKG 362

Query: 412 -DPDQARSN------------------FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             PD    N                  +  M ++G   D+    ++I  YGK+  LD AL
Sbjct: 363 FSPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLAL 422

Query: 453 NLLLELEK-DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
            L  +++   G  P   TYTVL+D LG+     EA  L+ ++ ++G  P  +   +L   
Sbjct: 423 QLYKDMKGLSGRNPDAITYTVLIDSLGKANRSVEAAALMSEMLDVGIKPTLQTYSALICG 482

Query: 512 YARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
           YA+AG  ++A      +   +    PD+  +  +++ LL G   + A  ++  M + G  
Sbjct: 483 YAKAGKREEAEDTFSCM--LRSGTKPDNLAYSVMLDVLLRGNETRKAWVLYRDMISDGHT 540

Query: 570 ASERLKVALI 579
            S  L   +I
Sbjct: 541 PSHSLYELMI 550



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/264 (21%), Positives = 115/264 (43%)

Query: 260  YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
            Y+ +I+A+ K    + AE ++  + ++G  PD+ T   L+  Y++ G  +RA+  F ++ 
Sbjct: 755  YTDIIEAYGKLKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAECGCYERARAIFNTMM 814

Query: 320  SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
              G  P  +  N ++ A    G+ +    +V+ +   G + S+   L +L +FA+ G++ 
Sbjct: 815  RDGPSPTVESINKLLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIF 874

Query: 380  GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
               +I + M+   + PT+    +++E   +      A      M     K +     SM+
Sbjct: 875  EVNKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSML 934

Query: 440  AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
              Y       K + +   +++ G EP   TY  L+    R +   E   L+ ++  LG  
Sbjct: 935  KMYTVIEDYKKTVQVYQRIKESGLEPDETTYNTLIIMYCRDRRPEEGYSLMQQMRNLGLD 994

Query: 500  PPFKIQVSLCDMYARAGIEKKALQ 523
            P      SL   + +    ++A Q
Sbjct: 995  PKLDTYKSLISAFGKQKCLEQAEQ 1018



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/268 (21%), Positives = 122/268 (45%), Gaps = 11/268 (4%)

Query: 244  AELVLSE---ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
            AE+++SE    +F+  +  ++ ++  +      +   ++ +++ E+G+ PD  T   L+ 
Sbjct: 911  AEIMVSEMEEANFKVELAIWNSMLKMYTVIEDYKKTVQVYQRIKESGLEPDETTYNTLII 970

Query: 301  MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
            MY +    +      + +R+ G  P    Y S+I A+      +    L + +++ G++ 
Sbjct: 971  MYCRDRRPEEGYSLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKL 1030

Query: 361  SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR--- 417
                Y  +++     G    A ++  +M+    +PTL +  LL+ +Y  +G+P +A    
Sbjct: 1031 DRSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVL 1090

Query: 418  SNF-DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476
            SN  +  + L   P     +S+I AY +       +  LLE++K+G EP    +T  V  
Sbjct: 1091 SNLKNTEVELTTLP----YSSVIDAYLRSKDYKSGIERLLEMKKEGLEPDHRIWTCFVRA 1146

Query: 477  LGRLQLINEAEQLLGKISELGEAPPFKI 504
                +  +E   LL  + ++G   P ++
Sbjct: 1147 ASFSKEKSEVMLLLKALQDIGFDIPIRL 1174



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 92/375 (24%), Positives = 154/375 (41%), Gaps = 28/375 (7%)

Query: 198  ILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNV 257
            I +    + PSP +    +LL    +D      RL E    LY  V EL   +  F+ + 
Sbjct: 809  IFNTMMRDGPSPTVESINKLLHALCVD-----GRLEE----LYVVVEEL--QDMGFKISK 857

Query: 258  RDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFES 317
                 ++DA A+   + +  +I   M   G +P I    +++ +  K   +  A+     
Sbjct: 858  SSILLMLDAFARAGNIFEVNKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSE 917

Query: 318  LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
            +    F+ +  ++NSM+  Y      K  + +   +  SG+E  E  Y  L+  +  C D
Sbjct: 918  MEEANFKVELAIWNSMLKMYTVIEDYKKTVQVYQRIKESGLEPDETTYNTLIIMY--CRD 975

Query: 378  VRG--AGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
             R      +   MR     P L++   L+ A+G+    +QA   F+ ++  G K D    
Sbjct: 976  RRPEEGYSLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFY 1035

Query: 436  ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS- 494
             +M+          KA  LL  ++  G EP  AT  +L+          EAE++L  +  
Sbjct: 1036 HTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKN 1095

Query: 495  ---ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLL-AG 550
               EL   P      S+ D Y R+   K  ++ L  LE KKE + PD   RI    + A 
Sbjct: 1096 TEVELTTLP----YSSVIDAYLRSKDYKSGIERL--LEMKKEGLEPD--HRIWTCFVRAA 1147

Query: 551  GFLQDAQRVHGLMEA 565
             F ++   V  L++A
Sbjct: 1148 SFSKEKSEVMLLLKA 1162



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/369 (17%), Positives = 147/369 (39%), Gaps = 35/369 (9%)

Query: 256  NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM-------------- 301
            +++ ++ L+ A+A+  C E A  I   M  +G  P + +   L+H               
Sbjct: 786  DLKTWNSLMSAYAECGCYERARAIFNTMMRDGPSPTVESINKLLHALCVDGRLEELYVVV 845

Query: 302  ---------------------YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNA 340
                                 +++AGN+    + + S+++ G+ P  ++Y  MI      
Sbjct: 846  EELQDMGFKISKSSILLMLDAFARAGNIFEVNKIYSSMKAAGYLPTIRLYRMMIELLCKG 905

Query: 341  GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
             + +    +V  M  +  +    I+ ++L+ +    D +   Q+   ++    +P   + 
Sbjct: 906  KRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTVIEDYKKTVQVYQRIKESGLEPDETTY 965

Query: 401  TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
              L+  Y +   P++  S    M  LG  P      S+I+A+GK+  L++A  L  EL  
Sbjct: 966  NTLIIMYCRDRRPEEGYSLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLS 1025

Query: 461  DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKK 520
             G +   + Y  ++         ++AE+LL  +   G  P       L   Y+ +G  ++
Sbjct: 1026 KGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQE 1085

Query: 521  ALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
            A + L  L+  + ++    +  +I+  L     +        M+ +G     R+    + 
Sbjct: 1086 AEKVLSNLKNTEVELTTLPYSSVIDAYLRSKDYKSGIERLLEMKKEGLEPDHRIWTCFVR 1145

Query: 581  SQTFNRQRQ 589
            + +F++++ 
Sbjct: 1146 AASFSKEKS 1154



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 74/350 (21%), Positives = 133/350 (38%), Gaps = 31/350 (8%)

Query: 251 ESFQTNVRDYSKLIDAH--------AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMY 302
           +  Q  +RD  +L   +         K  C + A R LK    NG   +  T   ++  Y
Sbjct: 560 DDVQKTIRDMEELCGMNPLEISSVLVKGECFDLAARQLKVAITNGYELENDTLLSILGSY 619

Query: 303 SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY--VNAGQPKLGMSLVDMMITSGIER 360
           S +G    A E  E L+ H     + +  ++I+ +  VN     L   L D  +      
Sbjct: 620 SSSGRHSEAFELLEFLKEHASGSKRLINEALIVLHCKVNNIGAALDEYLADPCVHGWCFG 679

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
              +Y  LL           A Q+ + +R+   +P+   C  +V  Y + G P+ A    
Sbjct: 680 GSTMYETLLHCCVANEHYAEASQVFSELRLSGCEPSESVCKSMVVVYCKLGFPETAYQVV 739

Query: 421 DYMIRLG-HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
           +     G H         +I AYGK  L  KA +++  L + G  P   T+  L+     
Sbjct: 740 NQAETKGFHFACSPMYTDIIEAYGKLKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAE 799

Query: 480 LQLINEAEQLLGKISELGEAPPF----KIQVSLC------DMYARAGIEKKALQALGFLE 529
                 A  +   +   G +P      K+  +LC      ++Y    +  + LQ +GF  
Sbjct: 800 CGCYERARAIFNTMMRDGPSPTVESINKLLHALCVDGRLEELY----VVVEELQDMGFKI 855

Query: 530 AKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
           +K   +       +++     G + +  +++  M+A G+  + RL   +I
Sbjct: 856 SKSSIL------LMLDAFARAGNIFEVNKIYSSMKAAGYLPTIRLYRMMI 899



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 59/284 (20%), Positives = 118/284 (41%), Gaps = 9/284 (3%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  L+          +A ++  ++  +G  P       +V +Y K G  + A +      
Sbjct: 684 YETLLHCCVANEHYAEASQVFSELRLSGCEPSESVCKSMVVVYCKLGFPETAYQVVNQAE 743

Query: 320 SHGFQ-PDKKVYNSMIMAYVNAGQPKL---GMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + GF      +Y  +I AY   G+ KL     S+V  +  SG     + + +L+ ++A+C
Sbjct: 744 TKGFHFACSPMYTDIIEAY---GKLKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAEC 800

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G    A  I N M  +   PT+ES   L+ A    G  ++     + +  +G K      
Sbjct: 801 GCYERARAIFNTMMRDGPSPTVESINKLLHALCVDGRLEELYVVVEELQDMGFKISKSSI 860

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             M+ A+ +   + +   +   ++  G+ P    Y ++++ L + + + +AE ++ ++ E
Sbjct: 861 LLMLDAFARAGNIFEVNKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEE 920

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD 539
                   I  S+  MY      KK +Q   +   K+  + PD+
Sbjct: 921 ANFKVELAIWNSMLKMYTVIEDYKKTVQV--YQRIKESGLEPDE 962


>gi|242070015|ref|XP_002450284.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
 gi|241936127|gb|EES09272.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
          Length = 727

 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 126/291 (43%), Gaps = 2/291 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L        V  Y+ LID + +   LE+A R+ ++M E G  PD+ T T+L++   K  N
Sbjct: 410 LRRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVCTYTILMNGSHKVRN 469

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L  A+E F+ + S G QPD   YN+ I A +  G       L ++M+  GI      Y  
Sbjct: 470 LPMAREFFDEMLSKGLQPDCFAYNTRICAELILGDTHKAFQLREVMMLKGIYPDTVTYNV 529

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++    + G+++ A  +   M  +  QP   + T L+ A+ + G   +AR   + M+  G
Sbjct: 530 IIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGLLSEARKLLNGMVSDG 589

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            +P       +I    ++  L  A     ++   G EP   TY VL+  L R      A 
Sbjct: 590 LQPSVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCRTGRTLLAY 649

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
               ++ E G AP       L D   R G    A++   + E  +  + PD
Sbjct: 650 HHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRL--YFEMHQNGIPPD 698



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 127/297 (42%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI A  +   ++  E +  +M   GI+P +VT   ++H   K+  ++ A+  F  +R
Sbjct: 317 YNPLITALLERGFVQKVEALQMEMENEGIMPTLVTYNAIIHGLLKSEQVEAAQLKFAEMR 376

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G  PD   YNSM+  Y  AG  K  + L+  +  +G+  +   Y  L+  + + G + 
Sbjct: 377 AMGLLPDLITYNSMLNGYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLE 436

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++   M  +   P + + T+L+    +  +   AR  FD M+  G +PD     + I
Sbjct: 437 EARRLKEEMVEQGCFPDVCTYTILMNGSHKVRNLPMAREFFDEMLSKGLQPDCFAYNTRI 496

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            A        KA  L   +   G  P   TY V++D L +   + +A+ L  K+   G  
Sbjct: 497 CAELILGDTHKAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQ 556

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDA 556
           P       L   +   G+  +A + L  + +   Q     +  +I+     G L  A
Sbjct: 557 PDCITYTCLIHAHCERGLLSEARKLLNGMVSDGLQPSVVTYTILIHTCCRRGNLYSA 613



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 77/358 (21%), Positives = 136/358 (37%), Gaps = 39/358 (10%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +  E     +  Y+ +I    K   +E A+    +M   G++PD++T   +++ Y KAGN
Sbjct: 340 MENEGIMPTLVTYNAIIHGLLKSEQVEAAQLKFAEMRAMGLLPDLITYNSMLNGYCKAGN 399

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAG-------------------------- 341
           L  A      LR  G  P    YN++I  Y   G                          
Sbjct: 400 LKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVCTYTI 459

Query: 342 ---------QPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
                       +     D M++ G++     Y   + +    GD   A Q+  +M ++ 
Sbjct: 460 LMNGSHKVRNLPMAREFFDEMLSKGLQPDCFAYNTRICAELILGDTHKAFQLREVMMLKG 519

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P   +  ++++   + G+   A+     M+  G +PD      +I A+ ++ LL +A 
Sbjct: 520 IYPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGLLSEAR 579

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
            LL  +  DG +P   TYT+L+    R   +  A     K+ ++G  P       L    
Sbjct: 580 KLLNGMVSDGLQPSVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHAL 639

Query: 513 ARAGIEKKALQALGFLEAKKEQMGPDDFER--IINGLLAGGFLQDAQRVHGLMEAQGF 568
            R G  +  L    F E  +  + P+ +    +I+G    G   DA R++  M   G 
Sbjct: 640 CRTG--RTLLAYHHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQNGI 695



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 71/152 (46%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           + P  + +  ++D L +       K  ++ +  +  Q +   Y+ LI AH +   L +A 
Sbjct: 520 IYPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGLLSEAR 579

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
           ++L  M  +G+ P +VT T+L+H   + GNL  A   F  +   G +P++  YN +I A 
Sbjct: 580 KLLNGMVSDGLQPSVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHAL 639

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
              G+  L       M+  G+  ++  Y  L+
Sbjct: 640 CRTGRTLLAYHHFHEMLERGLAPNKYTYTLLI 671



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 76/334 (22%), Positives = 138/334 (41%), Gaps = 5/334 (1%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNE--NGIVPDIVTSTVLVHMYSKAGNLDR 310
            +  +  Y+ L+D+  KE   ++A  +LK+M     G + + VT  V++   ++ G+L+ 
Sbjct: 239 IEPTIVTYNTLLDSFLKEGRKDEASMLLKEMETQGGGCLLNDVTYNVVISFLAREGHLEN 298

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A +  +S+R    +     YN +I A +  G  +   +L   M   GI  +   Y A++ 
Sbjct: 299 AAKLVDSMRLSK-KASSFTYNPLITALLERGFVQKVEALQMEMENEGIMPTLVTYNAIIH 357

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
              +   V  A      MR     P L +   ++  Y +AG+  +A      + R G  P
Sbjct: 358 GLLKSEQVEAAQLKFAEMRAMGLLPDLITYNSMLNGYCKAGNLKEALWLLGDLRRAGLAP 417

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
                 ++I  Y +   L++A  L  E+ + G  P   TYT+L++   +++ +  A +  
Sbjct: 418 TVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVCTYTILMNGSHKVRNLPMAREFF 477

Query: 491 GKISELGEAP-PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLA 549
            ++   G  P  F     +C      G   KA Q    +  K        +  II+GL  
Sbjct: 478 DEMLSKGLQPDCFAYNTRICAELI-LGDTHKAFQLREVMMLKGIYPDTVTYNVIIDGLCK 536

Query: 550 GGFLQDAQRVHGLMEAQGFAASERLKVALISSQT 583
            G L+DA+ +   M + G          LI +  
Sbjct: 537 TGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHC 570



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 110/258 (42%), Gaps = 7/258 (2%)

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
           AF  +  HG  PD +  N ++    +A +     ++   M+   IE +   Y  LL SF 
Sbjct: 195 AFRVVACHGVAPDVRDCNCVLRVLRDAARWDDVRAVYREMLQLEIEPTIVTYNTLLDSFL 254

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCT--LLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
           + G    A  +   M  +     L   T  +++    + G  + A    D M RL  K  
Sbjct: 255 KEGRKDEASMLLKEMETQGGGCLLNDVTYNVVISFLAREGHLENAAKLVDSM-RLSKKAS 313

Query: 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
                 +I A  ++  + K   L +E+E +G  P   TY  ++  L + + +  A+    
Sbjct: 314 SFTYNPLITALLERGFVQKVEALQMEMENEGIMPTLVTYNAIIHGLLKSEQVEAAQLKFA 373

Query: 492 KISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLA 549
           ++  +G  P      S+ + Y +AG  K+AL  LG  + ++  + P    +  +I+G   
Sbjct: 374 EMRAMGLLPDLITYNSMLNGYCKAGNLKEALWLLG--DLRRAGLAPTVLTYNTLIDGYCR 431

Query: 550 GGFLQDAQRVHGLMEAQG 567
            G L++A+R+   M  QG
Sbjct: 432 LGGLEEARRLKEEMVEQG 449



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/251 (21%), Positives = 98/251 (39%), Gaps = 36/251 (14%)

Query: 286 NGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKL 345
           +G+ PD+     ++ +   A   D  +  +  +     +P    YN+++ +++  G+   
Sbjct: 202 HGVAPDVRDCNCVLRVLRDAARWDDVRAVYREMLQLEIEPTIVTYNTLLDSFLKEGRKDE 261

Query: 346 GMSLVDMMIT--SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRI------------- 390
              L+  M T   G   ++  Y  ++   A+ G +  A ++ + MR+             
Sbjct: 262 ASMLLKEMETQGGGCLLNDVTYNVVISFLAREGHLENAAKLVDSMRLSKKASSFTYNPLI 321

Query: 391 ---------------------EEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
                                E   PTL +   ++    ++   + A+  F  M  +G  
Sbjct: 322 TALLERGFVQKVEALQMEMENEGIMPTLVTYNAIIHGLLKSEQVEAAQLKFAEMRAMGLL 381

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     SM+  Y K   L +AL LL +L + G  P   TY  L+D   RL  + EA +L
Sbjct: 382 PDLITYNSMLNGYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEARRL 441

Query: 490 LGKISELGEAP 500
             ++ E G  P
Sbjct: 442 KEEMVEQGCFP 452



 Score = 47.0 bits (110), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 64/157 (40%), Gaps = 4/157 (2%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELV--LSEESFQTNVRDYSKLIDAHAKENCLED 275
           LQP  I +  L+    E+   L  +  +L+  +  +  Q +V  Y+ LI    +   L  
Sbjct: 555 LQPDCITYTCLIHAHCERG--LLSEARKLLNGMVSDGLQPSVVTYTILIHTCCRRGNLYS 612

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A    +KM + GI P+ +T  VL+H   + G    A   F  +   G  P+K  Y  +I 
Sbjct: 613 AYGWFRKMLDVGIEPNEITYNVLIHALCRTGRTLLAYHHFHEMLERGLAPNKYTYTLLID 672

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
                G     + L   M  +GI      + AL + F
Sbjct: 673 GNCREGNWADAIRLYFEMHQNGIPPDYCTHNALFKGF 709


>gi|218192399|gb|EEC74826.1| hypothetical protein OsI_10663 [Oryza sativa Indica Group]
          Length = 703

 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 141/313 (45%), Gaps = 20/313 (6%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF---- 315
           +S L D +AK   ++DA R+  +M     V D V+ T +V  Y   G   R  E F    
Sbjct: 205 WSALADMYAKCGRVDDARRVFDRMP----VRDAVSWTAMVERYFDGG---RGGEGFRLFL 257

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             LR+ G +P++  Y  ++ A         G  +   M  SG   S     ALLR +++C
Sbjct: 258 HMLRTRGVRPNEFTYAGVLRACAEFAVESFGRQVHGRMAKSGTGDSCFAESALLRMYSKC 317

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           GD+  A ++   M     +P L S T ++  Y Q G P++A   FD  +R G KPD    
Sbjct: 318 GDMGSAVRVFEAMA----KPDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIKPDHVTF 373

Query: 436 ASMIAAYGKKNLLDKALNLLLEL-EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
             +++A     L+DK L +   + E+   E     Y  ++D L R      AE+++G ++
Sbjct: 374 VGVLSACAHAGLVDKGLEIFHSIKEQYCIEHTADHYACVIDLLSRSGQFERAEKMIGNMA 433

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQ 554
                  +   +  C ++   G+ ++A +AL  +E +     P  +  + N   + G   
Sbjct: 434 VKPNKFLWASLLGGCRIHKNVGLARRAAEALFEIEPEN----PATYVTLANIYASVGLFD 489

Query: 555 DAQRVHGLMEAQG 567
           + + V  +ME++G
Sbjct: 490 EVEDVRRIMESKG 502



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/254 (22%), Positives = 113/254 (44%), Gaps = 17/254 (6%)

Query: 241 FKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
           F++   +L     + N   Y+ ++ A A+        ++  +M ++G        + L+ 
Sbjct: 253 FRLFLHMLRTRGVRPNEFTYAGVLRACAEFAVESFGRQVHGRMAKSGTGDSCFAESALLR 312

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
           MYSK G++  A   FE++     +PD   + ++I  Y   GQP+  +   DM + SGI+ 
Sbjct: 313 MYSKCGDMGSAVRVFEAMA----KPDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIKP 368

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF--QPTLESCTLLVEAYGQAGDPDQARS 418
               ++ +L + A  G V    +I + ++ E++  + T +    +++   ++G  ++A  
Sbjct: 369 DHVTFVGVLSACAHAGLVDKGLEIFHSIK-EQYCIEHTADHYACVIDLLSRSGQFERAEK 427

Query: 419 NFDYMIRLGHKPDDRCTASMIAA---YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
               M     KP+    AS++     +    L  +A   L E+E +     PATY  L +
Sbjct: 428 MIGNM---AVKPNKFLWASLLGGCRIHKNVGLARRAAEALFEIEPE----NPATYVTLAN 480

Query: 476 WLGRLQLINEAEQL 489
               + L +E E +
Sbjct: 481 IYASVGLFDEVEDV 494


>gi|225452992|ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 644

 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 142/320 (44%), Gaps = 4/320 (1%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           E FQ +V  Y+ LI+   K      A R+L+ M +    PD+V    L+H   K     +
Sbjct: 173 EGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQ 232

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A   F  + + G  P+    NS++ A  N G+ K   +L++ M+ S I  +      ++ 
Sbjct: 233 AFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLTTVVD 292

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
           +  + G V  A  + ++M     +P + + T L++ +    + D+A   FD M+  G  P
Sbjct: 293 ALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHKGCAP 352

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           +     ++I  Y K   +DKA+ L  E+ +    P   TY  L+  L  +  + +A  L 
Sbjct: 353 NVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAIALF 412

Query: 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLL 548
            ++   G+ P       L D   +     KA+  L  +E     + PD   +  +I+G+ 
Sbjct: 413 REMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEG--SNLDPDIQIYTIVIDGMC 470

Query: 549 AGGFLQDAQRVHGLMEAQGF 568
             G L+DA+ +   + ++G 
Sbjct: 471 RAGELEDARDLFSNLSSKGL 490



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 153/355 (43%), Gaps = 14/355 (3%)

Query: 220 PSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQT--NVRDYSKLIDAHAKENCLEDAE 277
           PS +D+  +L  + +   + Y  V  L    +SF    NV   + LI++    N +  A 
Sbjct: 72  PSIVDFAKILTSITK--VKRYSTVLSLSRKMDSFGIPHNVYTLNVLINSFCHLNRVNFAF 129

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
            +L K+ + G  PD  + T L+      G +  A   F+ +   GFQPD  +Y ++I   
Sbjct: 130 SVLAKILKLGCQPDTASFTTLIKGLCLEGQIGEALHLFDKMIWEGFQPDVVIYATLINGL 189

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNI---MRIEEFQ 394
              G     + L+  M     +    +Y  L+ S   C D R   Q  N+   M  +   
Sbjct: 190 CKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSL--CKD-RQQTQAFNLFSEMITKGIS 246

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P + +C  LV A    G+     +  + M+     P+     +++ A  K+ ++ +A ++
Sbjct: 247 PNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLTTVVDALCKEGMVAQAHDV 306

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
           +  + + G EP   TYT L+D       ++EA ++   +   G AP      +L + Y +
Sbjct: 307 VDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHKGCAPNVFSYNTLINGYCK 366

Query: 515 AGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQG 567
             IE+       F E  ++++ P+   +  +I+GL   G LQDA  +   M A G
Sbjct: 367 --IERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAIALFREMVACG 419



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/322 (21%), Positives = 135/322 (41%), Gaps = 13/322 (4%)

Query: 211 LAEWKEL-----------LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVR 258
           L EWK +           + P+ I    ++D L +E        V +++  +   + +V 
Sbjct: 262 LGEWKHVNTLLNEMVDSKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMF-QSGVEPDVV 320

Query: 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318
            Y+ LID H   + +++A ++   M   G  P++ +   L++ Y K   +D+A   FE +
Sbjct: 321 TYTALIDGHCLRSEMDEAVKVFDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEM 380

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
                 P+   YN++I    + G+ +  ++L   M+  G       Y  LL    +   +
Sbjct: 381 CRQKLIPNTVTYNTLIHGLCHVGRLQDAIALFREMVACGQIPDLVTYRILLDYLCKNCHL 440

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             A  +   +      P ++  T++++   +AG+ + AR  F  +   G KP+      M
Sbjct: 441 DKAMALLKAIEGSNLDPDIQIYTIVIDGMCRAGELEDARDLFSNLSSKGLKPNVWTYNIM 500

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
                K+ LLD+A  L +E++++       TY  +     R    + A QLL ++   G 
Sbjct: 501 THGLCKRGLLDEATKLFMEMDENACSADGCTYNTITQGFLRNNETSRAIQLLEEMLARGF 560

Query: 499 APPFKIQVSLCDMYARAGIEKK 520
           +        L  M +  G+++ 
Sbjct: 561 SCDVSTTTLLVGMLSDDGLDQS 582



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 67/363 (18%), Positives = 123/363 (33%), Gaps = 45/363 (12%)

Query: 207 PSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDA 266
           PSP L+      +   + +  L D L   N  L+               ++ D++K++ +
Sbjct: 34  PSPFLSLLHNRFRSKYLHFNTLDDALSSFNRMLHMHPPP----------SIVDFAKILTS 83

Query: 267 HAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPD 326
             K         + +KM+  GI  ++ T  VL++ +     ++ A      +   G QPD
Sbjct: 84  ITKVKRYSTVLSLSRKMDSFGIPHNVYTLNVLINSFCHLNRVNFAFSVLAKILKLGCQPD 143

Query: 327 KKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITN 386
              + ++I      GQ    + L D MI  G                             
Sbjct: 144 TASFTTLIKGLCLEGQIGEALHLFDKMIWEG----------------------------- 174

Query: 387 IMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKN 446
                 FQP +     L+    + G    A      M +   +PD     ++I +  K  
Sbjct: 175 ------FQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDR 228

Query: 447 LLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQV 506
              +A NL  E+   G  P   T   LV  L  L        LL ++ +    P      
Sbjct: 229 QQTQAFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLT 288

Query: 507 SLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQ 566
           ++ D   + G+  +A   +  +     +     +  +I+G      + +A +V  +M  +
Sbjct: 289 TVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHK 348

Query: 567 GFA 569
           G A
Sbjct: 349 GCA 351


>gi|254939549|ref|NP_001157212.1| pentatricopeptide repeat10 [Zea mays]
 gi|218684531|gb|ACL01094.1| chloroplast pentatricopeptide repeat protein 10 [Zea mays]
 gi|223948163|gb|ACN28165.1| unknown [Zea mays]
 gi|413943497|gb|AFW76146.1| pentatricopeptide repeat10 [Zea mays]
          Length = 786

 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 144/325 (44%), Gaps = 4/325 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + +  F  NV  Y+ ++    K++       +L +M+ +G  P+ VT   ++ +  K G 
Sbjct: 376 MKKTGFVPNVNTYNLVLGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGM 435

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            D      E +RS G +  +  YN++I AY   G       + + M ++G       Y A
Sbjct: 436 EDYVTRVLEGMRSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFTPCITTYNA 495

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           LL   ++ GD   A  I + MR + F+P  +S +LL++ Y + G+     +  + +   G
Sbjct: 496 LLNVLSRQGDWSTAQSIVSKMRTKGFKPNEQSYSLLLQCYAKGGNVAGIAAIENEVYGSG 555

Query: 428 HK-PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
              P      +++ A  K   LD       E++  G+ P    +  ++    +  + ++A
Sbjct: 556 AVFPSWVILRTLVIANFKCRRLDGMETAFQEVKARGYNPDLVIFNSMLSIYAKNGMYSKA 615

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERII 544
            ++   I   G +P      SL DMYA+     +A + L  L+   + M PD   +  +I
Sbjct: 616 TEVFDSIKRSGLSPDLITYNSLMDMYAKCSESWEAEKILNQLKCS-QTMKPDVVSYNTVI 674

Query: 545 NGLLAGGFLQDAQRVHGLMEAQGFA 569
           NG    G +++AQRV   M A G A
Sbjct: 675 NGFCKQGLVKEAQRVLSEMVADGMA 699



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 109/260 (41%)

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           V  Y+ L+    K     +A R+L +M +NG  PD VT   L   Y++AG  + A    +
Sbjct: 280 VVTYNALLQVFGKAGNYTEALRVLGEMEQNGCQPDAVTYNELAGTYARAGFFEEAARCLD 339

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
           ++ S G  P+   YN+++ AY N G+    ++L D M  +G   +   Y  +L    +  
Sbjct: 340 TMASKGLLPNAFTYNTVMTAYGNVGKVDEALALFDQMKKTGFVPNVNTYNLVLGMLGKKS 399

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
                 ++   M      P   +   ++   G+ G  D      + M   G +       
Sbjct: 400 RFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMRSCGVELSRDTYN 459

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
           ++IAAYG+      A  +  E+   GF P   TY  L++ L R    + A+ ++ K+   
Sbjct: 460 TLIAAYGRCGSRTNAFKMYNEMTSAGFTPCITTYNALLNVLSRQGDWSTAQSIVSKMRTK 519

Query: 497 GEAPPFKIQVSLCDMYARAG 516
           G  P  +    L   YA+ G
Sbjct: 520 GFKPNEQSYSLLLQCYAKGG 539



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 64/295 (21%), Positives = 123/295 (41%)

Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338
           +L +M   G+ PD  T++ ++    + G +D A   FE L++ G  P    YN+++  + 
Sbjct: 232 LLDEMRAAGVEPDGFTASTVIAACCRDGLVDEAVAFFEDLKARGHAPCVVTYNALLQVFG 291

Query: 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398
            AG     + ++  M  +G +     Y  L  ++A+ G    A +  + M  +   P   
Sbjct: 292 KAGNYTEALRVLGEMEQNGCQPDAVTYNELAGTYARAGFFEEAARCLDTMASKGLLPNAF 351

Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
           +   ++ AYG  G  D+A + FD M + G  P+      ++   GKK+     L +L E+
Sbjct: 352 TYNTVMTAYGNVGKVDEALALFDQMKKTGFVPNVNTYNLVLGMLGKKSRFTVMLEMLGEM 411

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
            + G  P   T+  ++   G+  + +   ++L  +   G         +L   Y R G  
Sbjct: 412 SRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMRSCGVELSRDTYNTLIAAYGRCGSR 471

Query: 519 KKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASER 573
             A +    + +         +  ++N L   G    AQ +   M  +GF  +E+
Sbjct: 472 TNAFKMYNEMTSAGFTPCITTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNEQ 526



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 132/315 (41%), Gaps = 38/315 (12%)

Query: 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ--PKLGMS 348
           D+   T ++H  S+AG  +RA E F  LR  G  P    YN ++  Y   G+  P++ ++
Sbjct: 173 DVRAYTTVLHALSRAGRYERALELFAELRRQGVAPTLVTYNVVLDVYGRMGRSWPRI-VA 231

Query: 349 LVDMMITSGIE-------------------------------RSEE----IYLALLRSFA 373
           L+D M  +G+E                               R        Y ALL+ F 
Sbjct: 232 LLDEMRAAGVEPDGFTASTVIAACCRDGLVDEAVAFFEDLKARGHAPCVVTYNALLQVFG 291

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           + G+   A ++   M     QP   +   L   Y +AG  ++A    D M   G  P+  
Sbjct: 292 KAGNYTEALRVLGEMEQNGCQPDAVTYNELAGTYARAGFFEEAARCLDTMASKGLLPNAF 351

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
              +++ AYG    +D+AL L  +++K GF P   TY +++  LG+        ++LG++
Sbjct: 352 TYNTVMTAYGNVGKVDEALALFDQMKKTGFVPNVNTYNLVLGMLGKKSRFTVMLEMLGEM 411

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFL 553
           S  G  P      ++  +  + G+E    + L  + +   ++  D +  +I      G  
Sbjct: 412 SRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMRSCGVELSRDTYNTLIAAYGRCGSR 471

Query: 554 QDAQRVHGLMEAQGF 568
            +A +++  M + GF
Sbjct: 472 TNAFKMYNEMTSAGF 486



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 111/263 (42%), Gaps = 14/263 (5%)

Query: 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320
           S +I A  ++  +++A    + +   G  P +VT   L+ ++ KAGN   A      +  
Sbjct: 249 STVIAACCRDGLVDEAVAFFEDLKARGHAPCVVTYNALLQVFGKAGNYTEALRVLGEMEQ 308

Query: 321 HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRG 380
           +G QPD   YN +   Y  AG  +     +D M + G+  +   Y  ++ ++   G V  
Sbjct: 309 NGCQPDAVTYNELAGTYARAGFFEEAARCLDTMASKGLLPNAFTYNTVMTAYGNVGKVDE 368

Query: 381 AGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI-------RLGHKPDDR 433
           A  + + M+   F P + +  L++   G+       +S F  M+       R G  P+  
Sbjct: 369 ALALFDQMKKTGFVPNVNTYNLVLGMLGK-------KSRFTVMLEMLGEMSRSGCTPNRV 421

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
              +M+A  GK+ + D    +L  +   G E    TY  L+   GR      A ++  ++
Sbjct: 422 TWNTMLAVCGKRGMEDYVTRVLEGMRSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEM 481

Query: 494 SELGEAPPFKIQVSLCDMYARAG 516
           +  G  P      +L ++ +R G
Sbjct: 482 TSAGFTPCITTYNALLNVLSRQG 504



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 74/351 (21%), Positives = 143/351 (40%), Gaps = 40/351 (11%)

Query: 220 PSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERI 279
           P+R+ W  +L    ++  + Y       +     + +   Y+ LI A+ +     +A ++
Sbjct: 418 PNRVTWNTMLAVCGKRGMEDYVTRVLEGMRSCGVELSRDTYNTLIAAYGRCGSRTNAFKM 477

Query: 280 LKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339
             +M   G  P I T   L+++ S+ G+   A+     +R+ GF+P+++ Y+ ++  Y  
Sbjct: 478 YNEMTSAGFTPCITTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNEQSYSLLLQCYAK 537

Query: 340 AGQPKLGMSLVDMMITSG-IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398
            G      ++ + +  SG +  S  I   L+ +  +C  + G       ++   + P L 
Sbjct: 538 GGNVAGIAAIENEVYGSGAVFPSWVILRTLVIANFKCRRLDGMETAFQEVKARGYNPDLV 597

Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD-------------------------- 432
               ++  Y + G   +A   FD + R G  PD                           
Sbjct: 598 IFNSMLSIYAKNGMYSKATEVFDSIKRSGLSPDLITYNSLMDMYAKCSESWEAEKILNQL 657

Query: 433 RCTASM----------IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
           +C+ +M          I  + K+ L+ +A  +L E+  DG  P   TY  LV     L++
Sbjct: 658 KCSQTMKPDVVSYNTVINGFCKQGLVKEAQRVLSEMVADGMAPCAVTYHTLVGGYSSLEM 717

Query: 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE 533
            +EA +++G + + G  P       + + Y RA   K+  +A GFL    E
Sbjct: 718 FSEAREVIGYMVQHGLKPMELTYRRVVESYCRA---KRFEEARGFLSEVSE 765



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 64/132 (48%), Gaps = 17/132 (12%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKV-----AELVLSE----ESFQTNVRDYSKLIDAHA 268
           L P  I + +L+D        +Y K      AE +L++    ++ + +V  Y+ +I+   
Sbjct: 627 LSPDLITYNSLMD--------MYAKCSESWEAEKILNQLKCSQTMKPDVVSYNTVINGFC 678

Query: 269 KENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKK 328
           K+  +++A+R+L +M  +G+ P  VT   LV  YS       A+E    +  HG +P + 
Sbjct: 679 KQGLVKEAQRVLSEMVADGMAPCAVTYHTLVGGYSSLEMFSEAREVIGYMVQHGLKPMEL 738

Query: 329 VYNSMIMAYVNA 340
            Y  ++ +Y  A
Sbjct: 739 TYRRVVESYCRA 750



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 44/204 (21%), Positives = 76/204 (37%), Gaps = 37/204 (18%)

Query: 402 LLVEAYGQAGDPDQARSNFDYM-IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
           ++V A G+ G  D   +  D   +  G + D R   +++ A  +    ++AL L  EL +
Sbjct: 143 MVVRALGREGQHDAVCALLDETPLPPGSRLDVRAYTTVLHALSRAGRYERALELFAELRR 202

Query: 461 DGFEPGPATYTVLVDWLGRL------------------------------------QLIN 484
            G  P   TY V++D  GR+                                     L++
Sbjct: 203 QGVAPTLVTYNVVLDVYGRMGRSWPRIVALLDEMRAAGVEPDGFTASTVIAACCRDGLVD 262

Query: 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERII 544
           EA      +   G AP      +L  ++ +AG   +AL+ LG +E    Q     +  + 
Sbjct: 263 EAVAFFEDLKARGHAPCVVTYNALLQVFGKAGNYTEALRVLGEMEQNGCQPDAVTYNELA 322

Query: 545 NGLLAGGFLQDAQRVHGLMEAQGF 568
                 GF ++A R    M ++G 
Sbjct: 323 GTYARAGFFEEAARCLDTMASKGL 346


>gi|357460281|ref|XP_003600422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355489470|gb|AES70673.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 512

 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 143/307 (46%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           FQ N   Y  LI+   K    + A  +L++++   +  D+V    ++    K   ++ A 
Sbjct: 170 FQLNQVSYRTLINGLCKVGQTKAALEMLRRIDGKLVRLDVVMYNTIIDGVCKDKLVNDAF 229

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           + +  + +    P    YN++I      GQ K  + L+  MI   I  +   +  L+ +F
Sbjct: 230 DFYSEMVAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILENINPTVYTFSILVDAF 289

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + G V+ A  +  +M  ++ +P + +   L+  Y    + ++A S F+ M ++G  PD 
Sbjct: 290 CKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIGVAPDV 349

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
              + MI+ + K  ++D+A+ L  E+      P   TY  L+D L +   I+ A +L+G+
Sbjct: 350 HSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGLCKSGRISYALKLIGE 409

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
           + + G+ P      SL D   +     KA++ L  L+    Q     +  +INGL   G 
Sbjct: 410 MHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQPSVCTYNILINGLCKSGR 469

Query: 553 LQDAQRV 559
           L+DAQ+V
Sbjct: 470 LKDAQKV 476



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/203 (21%), Positives = 95/203 (46%)

Query: 246 LVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKA 305
           +V+ ++  + N+  Y+ L++ +   N +  AE I   M + G+ PD+ + ++++  + K 
Sbjct: 303 VVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIGVAPDVHSYSIMISGFCKI 362

Query: 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
             +D A + FE +      PD   YNS+I     +G+    + L+  M   G   +   Y
Sbjct: 363 KMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGLCKSGRISYALKLIGEMHDRGQPPNIITY 422

Query: 366 LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
            +LL +  +   V  A ++   ++    QP++ +  +L+    ++G    A+  F+ ++ 
Sbjct: 423 NSLLDALCKNHHVDKAIELLTKLKDHNIQPSVCTYNILINGLCKSGRLKDAQKVFEDVLV 482

Query: 426 LGHKPDDRCTASMIAAYGKKNLL 448
            G+  D     +MI  + KK  +
Sbjct: 483 NGYNIDVYTYNTMIKGFCKKGFV 505



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 69/377 (18%), Positives = 153/377 (40%), Gaps = 45/377 (11%)

Query: 234 EQNTQLYFKVAELV------LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENG 287
             +T LY ++  LV      L +++   ++  + K++ +  K N       + ++M  NG
Sbjct: 40  SNSTTLYSQLHNLVSSFNHLLHQKNPTPSIIQFGKILGSLVKANHYSIVVSLHRQMEFNG 99

Query: 288 IVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGM 347
           I  ++VT ++L++ +S+ G+   +   F ++   G++PD     ++I      G     +
Sbjct: 100 IASNLVTLSILINCFSQLGHNSLSFSVFSNILKKGYEPDAITLTTLIKGLCLKGDIHKAL 159

Query: 348 SLVDMMITSGIERSEEIYLALLRSFAQCGDVRGA--------GQITNI------------ 387
              D ++  G + ++  Y  L+    + G  + A        G++  +            
Sbjct: 160 HFHDKVLALGFQLNQVSYRTLINGLCKVGQTKAALEMLRRIDGKLVRLDVVMYNTIIDGV 219

Query: 388 ---------------MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
                          M  +   PT+ +   L+      G    A      MI     P  
Sbjct: 220 CKDKLVNDAFDFYSEMVAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILENINPTV 279

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
              + ++ A+ K+  + +A N+ + + K   +P   TY  L++    +  +N+AE +   
Sbjct: 280 YTFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNT 339

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAG 550
           ++++G AP       +   + +  +  +A++   F E   +Q+ PD   +  +I+GL   
Sbjct: 340 MAQIGVAPDVHSYSIMISGFCKIKMVDEAMKL--FEEMHCKQIFPDVVTYNSLIDGLCKS 397

Query: 551 GFLQDAQRVHGLMEAQG 567
           G +  A ++ G M  +G
Sbjct: 398 GRISYALKLIGEMHDRG 414


>gi|32488707|emb|CAE03450.1| OSJNBa0088H09.8 [Oryza sativa Japonica Group]
          Length = 905

 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 125/253 (49%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
            V  Y+ LI    +++ ++ A  +L KM+  GI P+  T T+++  Y+ +G++ +A E F
Sbjct: 582 TVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYF 641

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             ++  G + D  +Y +++ A   +G+ +  +++   M    I R+  IY  L+  +A+ 
Sbjct: 642 TKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARR 701

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           GDV  A  +   M+ +   P + + T  + A  +AGD  +A    + M+ +G KP+ +  
Sbjct: 702 GDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTY 761

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I  + + +L D+AL    E++  G +P  A+Y  LV  L     + E     G IS 
Sbjct: 762 TTLIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLVTSLLSRATVMEGSTYTGIISV 821

Query: 496 LGEAPPFKIQVSL 508
             E     + V L
Sbjct: 822 CREMSENDLTVDL 834



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 140/321 (43%), Gaps = 1/321 (0%)

Query: 246 LVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKA 305
           L L+  ++   +  ++K+ D+H   N +E AE ++++M E+GI   I     ++H Y+  
Sbjct: 363 LELTIVTYSILISGFAKINDSHQSGN-MERAEELVREMEEDGIDAPIDVYHSMMHGYTII 421

Query: 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
            N ++    FE L+  GF+P    Y  ++  YV  G+    +S+   M + GI+ + + Y
Sbjct: 422 QNENKCLVVFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTY 481

Query: 366 LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
             L+  F    D   A  I   M     QP      LL+EA+ + G+ D+A    + M +
Sbjct: 482 SMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQK 541

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
              +P +R    +I  Y     +  AL+ L  + + G  P   TY  L+  L R   +  
Sbjct: 542 ERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQR 601

Query: 486 AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIIN 545
           A  +L K+S  G  P       +   YA +G   KA +    ++    ++    +E ++ 
Sbjct: 602 AVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLR 661

Query: 546 GLLAGGFLQDAQRVHGLMEAQ 566
                G +Q A  V   M  Q
Sbjct: 662 ACCKSGRMQSALAVTREMSFQ 682



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 91/414 (21%), Positives = 173/414 (41%), Gaps = 55/414 (13%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAE----LVLSEE----SFQTNVRDYSKLIDAHAK 269
            +PS I +  LL+        LY K+ +    L +S+E      + N + YS LI+    
Sbjct: 439 FKPSIISYGCLLN--------LYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIH 490

Query: 270 ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKV 329
            +   +A  I ++M  +G+ PD     +L+  + K GN+DRA    E ++    QP  + 
Sbjct: 491 LHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRA 550

Query: 330 YNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389
           +  +I  Y  AG  K  +  +D+M  SG   +   Y AL+    +   V+ A  + + M 
Sbjct: 551 FRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMS 610

Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD 449
           I    P   + T+++  Y  +GD  +A   F  +   G K D     +++ A  K   + 
Sbjct: 611 IAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQ 670

Query: 450 KAL-----------------------------------NLLLELEKDGFEPGPATYTVLV 474
            AL                                   +L+ ++++DG  P   TYT  +
Sbjct: 671 SALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYI 730

Query: 475 DWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ 534
           +   +   +  AE+++ ++ ++G  P  K   +L   +AR  +  +AL+   F E K   
Sbjct: 731 NACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKC--FEEMKLAG 788

Query: 535 MGPDD--FERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNR 586
           + PD+  +  ++  LL+   + +     G++      +   L V L ++  ++R
Sbjct: 789 LKPDEASYHCLVTSLLSRATVMEGSTYTGIISVCREMSENDLTVDLRTAVHWSR 842



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 130/294 (44%), Gaps = 16/294 (5%)

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           +++  Y+K G+   A+  FE++R+ G +P+  V+ S++ AY  A   +  +S V+ M + 
Sbjct: 302 LMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSE 361

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL---------LVEAY 407
           G+E +   Y  L+  FA+  D   +G   N+ R EE    +E   +         ++  Y
Sbjct: 362 GLELTIVTYSILISGFAKINDSHQSG---NMERAEELVREMEEDGIDAPIDVYHSMMHGY 418

Query: 408 GQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGP 467
               + ++    F+ +   G KP       ++  Y K   + KAL++  E+E  G +   
Sbjct: 419 TIIQNENKCLVVFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNN 478

Query: 468 ATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGF 527
            TY++L++    L     A  +  ++   G  P   I   L + + + G   +A+  L  
Sbjct: 479 KTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILE- 537

Query: 528 LEAKKEQMGPDD--FERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
            + +KE+M P +  F  II G    G ++ A     LM   G   +     ALI
Sbjct: 538 -KMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALI 590



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 68/321 (21%), Positives = 133/321 (41%), Gaps = 6/321 (1%)

Query: 258 RDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFES 317
           R++  +I  +AK      A    + M   GI P+    T LVH Y+ A ++  A    E 
Sbjct: 298 REFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEE 357

Query: 318 LRSHGFQPDKKVYNSMIMAYV------NAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
           ++S G +     Y+ +I  +        +G  +    LV  M   GI+   ++Y +++  
Sbjct: 358 MKSEGLELTIVTYSILISGFAKINDSHQSGNMERAEELVREMEEDGIDAPIDVYHSMMHG 417

Query: 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
           +    +      +   ++   F+P++ S   L+  Y + G   +A S    M   G K +
Sbjct: 418 YTIIQNENKCLVVFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHN 477

Query: 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
           ++  + +I  +   +    A  +  E+ + G +P  A Y +L++   ++  ++ A  +L 
Sbjct: 478 NKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILE 537

Query: 492 KISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGG 551
           K+ +    P  +    + + YA AG  K AL  L  +           +  +I+GL+   
Sbjct: 538 KMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKH 597

Query: 552 FLQDAQRVHGLMEAQGFAASE 572
            +Q A  V   M   G   +E
Sbjct: 598 KVQRAVSVLDKMSIAGITPNE 618


>gi|449437378|ref|XP_004136469.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial-like [Cucumis sativus]
 gi|449503560|ref|XP_004162063.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial-like [Cucumis sativus]
          Length = 615

 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 159/330 (48%), Gaps = 16/330 (4%)

Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311
           SF+ ++R Y+ LI+   +   L+ A+R+  +M +N I P +VT   L+  Y +  +++ A
Sbjct: 262 SFEPSIRAYNILINGWFRSRKLKHAQRLWFEMKKNKISPTVVTYGTLIEGYCRMRSVEIA 321

Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPK--LGMSLVDMMITSGIERSEEIYLALL 369
            E  + +R  G +P+  VYN ++ A   AG+ K  LGM    M++  G   S   Y +L+
Sbjct: 322 IELVDEMRREGIEPNAIVYNPIVDALGEAGRFKEALGMMERFMVLEQGPTIS--TYNSLV 379

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
           + + + GD+ GA +I  +M    F PT  +       + + G  +++ S ++ MI  G+ 
Sbjct: 380 KGYCKAGDLSGASKILKMMIGRGFTPTPTTYNYFFRFFSKYGKIEESMSLYNKMIESGYA 439

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD      ++    ++  L+ A+ +  E++  GF+   AT T+L+  L ++    EA   
Sbjct: 440 PDKLTYHLLLKMLCEEERLNLAVQVCNEMKARGFDMDLATSTMLMHLLCKMHKFEEAFAE 499

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKA--LQALGFLEAKKEQMGPDDFERIINGL 547
              +   G  P +     L D + + G+ K A  LQ +       E++ PD + +  + +
Sbjct: 500 FEHMIHRGIVPQYLTFCRLHDEFMKRGLTKMASKLQEMMSSVPHSEKL-PDTYNQTPDSI 558

Query: 548 LAGGFLQDAQRVHGLMEAQGFAASERLKVA 577
                   A+R   + +A+  A SE LKV 
Sbjct: 559 -------RARRTSIMRKAE--AMSEMLKVC 579



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 118/284 (41%), Gaps = 13/284 (4%)

Query: 226 INLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNE 285
           IN+L + RE ++      + L   EESF  +V  +  LI  +A+   ++ A R      E
Sbjct: 161 INVLAKSREFDSAWSLITSRLRGGEESFLVSVEVFVILIRRYARAGMVQPAIRTY----E 216

Query: 286 NGIVPDIVTST-------VLVHMYSKAGNLDRAKEAFESLRSHG--FQPDKKVYNSMIMA 336
                + ++ T       +L+    K G++  A E F   R  G  F+P  + YN +I  
Sbjct: 217 FACNLETISGTGSEGLFEILLDSLCKEGHVRVASEYFNRKREMGSSFEPSIRAYNILING 276

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           +  + + K    L   M  + I  +   Y  L+  + +   V  A ++ + MR E  +P 
Sbjct: 277 WFRSRKLKHAQRLWFEMKKNKISPTVVTYGTLIEGYCRMRSVEIAIELVDEMRREGIEPN 336

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
                 +V+A G+AG   +A    +  + L   P      S++  Y K   L  A  +L 
Sbjct: 337 AIVYNPIVDALGEAGRFKEALGMMERFMVLEQGPTISTYNSLVKGYCKAGDLSGASKILK 396

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
            +   GF P P TY     +  +   I E+  L  K+ E G AP
Sbjct: 397 MMIGRGFTPTPTTYNYFFRFFSKYGKIEESMSLYNKMIESGYAP 440



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 87/190 (45%), Gaps = 6/190 (3%)

Query: 245 ELV--LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMN--ENGIVPDIVTSTVLVH 300
           ELV  +  E  + N   Y+ ++DA  +    ++A  ++++    E G  P I T   LV 
Sbjct: 323 ELVDEMRREGIEPNAIVYNPIVDALGEAGRFKEALGMMERFMVLEQG--PTISTYNSLVK 380

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
            Y KAG+L  A +  + +   GF P    YN     +   G+ +  MSL + MI SG   
Sbjct: 381 GYCKAGDLSGASKILKMMIGRGFTPTPTTYNYFFRFFSKYGKIEESMSLYNKMIESGYAP 440

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
            +  Y  LL+   +   +  A Q+ N M+   F   L + T+L+    +    ++A + F
Sbjct: 441 DKLTYHLLLKMLCEEERLNLAVQVCNEMKARGFDMDLATSTMLMHLLCKMHKFEEAFAEF 500

Query: 421 DYMIRLGHKP 430
           ++MI  G  P
Sbjct: 501 EHMIHRGIVP 510



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 70/318 (22%), Positives = 136/318 (42%), Gaps = 37/318 (11%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL-----RSHGFQPDK 327
           LEDA      ++  GIVP   +S++L  ++    + D + +   SL     +  GF+P  
Sbjct: 107 LEDA------LDRTGIVP---SSSLLEAVFD---HFDSSPKFLHSLFLWAAKKSGFRPSA 154

Query: 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER---SEEIYLALLRSFAQCGDVRGAGQI 384
            ++N +I     + +     SL+   +  G E    S E+++ L+R +A+ G V+ A   
Sbjct: 155 ALFNRLINVLAKSREFDSAWSLITSRLRGGEESFLVSVEVFVILIRRYARAGMVQPA--- 211

Query: 385 TNIMRIEEFQPTLESCT---------LLVEAYGQAGDPDQARSNFDYMIRLG--HKPDDR 433
              +R  EF   LE+ +         +L+++  + G    A   F+    +G   +P  R
Sbjct: 212 ---IRTYEFACNLETISGTGSEGLFEILLDSLCKEGHVRVASEYFNRKREMGSSFEPSIR 268

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
               +I  + +   L  A  L  E++K+   P   TY  L++   R++ +  A +L+ ++
Sbjct: 269 AYNILINGWFRSRKLKHAQRLWFEMKKNKISPTVVTYGTLIEGYCRMRSVEIAIELVDEM 328

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFL 553
              G  P   +   + D    AG  K+AL  +      ++      +  ++ G    G L
Sbjct: 329 RREGIEPNAIVYNPIVDALGEAGRFKEALGMMERFMVLEQGPTISTYNSLVKGYCKAGDL 388

Query: 554 QDAQRVHGLMEAQGFAAS 571
             A ++  +M  +GF  +
Sbjct: 389 SGASKILKMMIGRGFTPT 406



 Score = 39.3 bits (90), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 12/159 (7%)

Query: 234 EQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIV 293
           E++  LY K+ E       +  +   Y  L+    +E  L  A ++  +M   G   D+ 
Sbjct: 424 EESMSLYNKMIE-----SGYAPDKLTYHLLLKMLCEEERLNLAVQVCNEMKARGFDMDLA 478

Query: 294 TSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMM 353
           TST+L+H+  K    + A   FE +   G  P    +  +   ++  G  K+   L +MM
Sbjct: 479 TSTMLMHLLCKMHKFEEAFAEFEHMIHRGIVPQYLTFCRLHDEFMKRGLTKMASKLQEMM 538

Query: 354 ITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
             S +  SE+    L  ++ Q  D   A + T+IMR  E
Sbjct: 539 --SSVPHSEK----LPDTYNQTPDSIRARR-TSIMRKAE 570


>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
          Length = 648

 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 105/229 (45%), Gaps = 1/229 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LID   KENCL +A ++   M   G  PDIVT ++L++ Y KA  +D     F  + 
Sbjct: 382 YNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREIS 441

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           S G  P+   YN++++ +  +G+      L   M++ G+  S   Y  LL      G++ 
Sbjct: 442 SKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELN 501

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A +I   M+       +    +++     A   D A S F  +   G KPD      MI
Sbjct: 502 KALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMI 561

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV-DWLGRLQLINEAE 487
               KK  L +A  L  ++++DG  P   TY +L+   LG   LI+  E
Sbjct: 562 GGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVE 610



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 131/320 (40%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E  FQ +   Y  +++   K      A  + +KM E  I   +V  ++++    K G+
Sbjct: 230 MVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGS 289

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            D A   F  +   G + D   Y+S+I    N G+   G  ++  MI   I      + A
Sbjct: 290 FDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSA 349

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+  F + G +  A ++ N M      P   +   L++ + +     +A   FD M+  G
Sbjct: 350 LIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKG 409

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            +PD    + +I +Y K   +D  + L  E+   G  P   TY  LV    +   +N A+
Sbjct: 410 CEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAK 469

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
           +L  ++   G  P       L D     G   KAL+    ++  +  +G   +  II+G+
Sbjct: 470 ELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGM 529

Query: 548 LAGGFLQDAQRVHGLMEAQG 567
                + DA  +   +  +G
Sbjct: 530 CNASKVDDAWSLFCSLSDKG 549



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 125/277 (45%), Gaps = 2/277 (0%)

Query: 218 LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
            QP  + +  +L+RL +  N+ L   +    + E + + +V  YS +ID+  K+   +DA
Sbjct: 235 FQPDEVTYGPVLNRLCKSGNSALALDLFR-KMEERNIKASVVQYSIVIDSLCKDGSFDDA 293

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
             +  +M   GI  D+VT + L+      G  D   +    +      PD   ++++I  
Sbjct: 294 LSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDV 353

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           +V  G+      L + MIT GI      Y +L+  F +   +  A Q+ ++M  +  +P 
Sbjct: 354 FVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPD 413

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           + + ++L+ +Y +A   D     F  +   G  P+     +++  + +   L+ A  L  
Sbjct: 414 IVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQ 473

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
           E+   G  P   TY +L+D L     +N+A ++  K+
Sbjct: 474 EMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKM 510



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/265 (21%), Positives = 124/265 (46%), Gaps = 10/265 (3%)

Query: 218 LQPSRIDWINLLDRLREQNT-----QLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC 272
           + P  I + +L+D   ++N      Q++    +L++S+   + ++  YS LI+++ K   
Sbjct: 375 IAPDTITYNSLIDGFCKENCLHEANQMF----DLMVSKGC-EPDIVTYSILINSYCKAKR 429

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           ++D  R+ ++++  G++P+ +T   LV  + ++G L+ AKE F+ + S G  P    Y  
Sbjct: 430 VDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGI 489

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           ++    + G+    + + + M  S +     IY  ++        V  A  +   +  + 
Sbjct: 490 LLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKG 549

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
            +P + +  +++    + G   +A   F  M   G  PDD     +I A+   + L  ++
Sbjct: 550 VKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSV 609

Query: 453 NLLLELEKDGFEPGPATYTVLVDWL 477
            L+ E++  GF    +T  +++D L
Sbjct: 610 ELIEEMKVCGFSADSSTIKMVIDML 634



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 68/321 (21%), Positives = 131/321 (40%), Gaps = 4/321 (1%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           ++ +   +S L++    E  + +A  ++ +M E    PD+VT + L++     G +  A 
Sbjct: 165 YEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEAL 224

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
              + +  +GFQPD+  Y  ++     +G   L + L   M    I+ S   Y  ++ S 
Sbjct: 225 VLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSL 284

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + G    A  + N M ++  +  + + + L+      G  D        MI     PD 
Sbjct: 285 CKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDV 344

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
              +++I  + K+  L +A  L  E+   G  P   TY  L+D   +   ++EA Q+   
Sbjct: 345 VTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDL 404

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAG 550
           +   G  P       L + Y +A      ++   F E   + + P+   +  ++ G    
Sbjct: 405 MVSKGCEPDIVTYSILINSYCKAKRVDDGMRL--FREISSKGLIPNTITYNTLVLGFCQS 462

Query: 551 GFLQDAQRVHGLMEAQGFAAS 571
           G L  A+ +   M ++G   S
Sbjct: 463 GKLNAAKELFQEMVSRGVPPS 483



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/306 (19%), Positives = 126/306 (41%)

Query: 263 LIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG 322
           +I+ + ++  L  A  +L +  + G  PD +T + LV+ +   G +  A    + +    
Sbjct: 140 MINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMK 199

Query: 323 FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAG 382
            +PD    +++I      G+    + L+D M+  G +  E  Y  +L    + G+   A 
Sbjct: 200 QRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALAL 259

Query: 383 QITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAY 442
            +   M     + ++   ++++++  + G  D A S F+ M   G K D    +S+I   
Sbjct: 260 DLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGL 319

Query: 443 GKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPF 502
                 D    +L E+      P   T++ L+D   +   + EA++L  ++   G AP  
Sbjct: 320 CNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDT 379

Query: 503 KIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGL 562
               SL D + +     +A Q    + +K  +     +  +IN       + D  R+   
Sbjct: 380 ITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFRE 439

Query: 563 MEAQGF 568
           + ++G 
Sbjct: 440 ISSKGL 445


>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
 gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 148/308 (48%), Gaps = 3/308 (0%)

Query: 203 KEEDPSPLLAEWKEL-LQPSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVRDY 260
           K E+ S +L + KE+ L+P+ + +  L+D    + N ++ F   + ++  E     V  Y
Sbjct: 276 KLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMV-REGLMPTVSTY 334

Query: 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320
           + LI A   +  +++A+ I+K+M+E G+VPD VT  +L++ Y + GN+ +A    + + S
Sbjct: 335 NMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMIS 394

Query: 321 HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRG 380
            G QP +  Y S+I      G+ K    L + ++  GI     ++ AL+      G++  
Sbjct: 395 KGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDR 454

Query: 381 AGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIA 440
           A  +   M   +  P   +   L++   + G  + AR   + M   G KPD     ++I+
Sbjct: 455 AFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLIS 514

Query: 441 AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
            Y K+  +  A  +  E+   GF P   TY  L+  L + +  + AEQLL ++   G  P
Sbjct: 515 GYSKRGDMKDAFRVRDEMLSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEMISKGITP 574

Query: 501 PFKIQVSL 508
                +SL
Sbjct: 575 NDNTYLSL 582



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 148/343 (43%), Gaps = 8/343 (2%)

Query: 247 VLSEESF----QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMY 302
           VL  E F    +++V  ++ +I+   KE  L+ A+  +  M   GI P++VT   ++H Y
Sbjct: 177 VLYAEMFRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGY 236

Query: 303 SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE 362
              G ++ A+  F+ ++  G +PD   Y S I      G+ +    +++ M   G+  + 
Sbjct: 237 CSRGRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTA 296

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
             Y  L+  +   G++  A    + M  E   PT+ +  +L+ A       D+A      
Sbjct: 297 VTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKE 356

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
           M   G  PD      +I  Y +   + KA  L  E+   G +P   TYT L+  L +   
Sbjct: 357 MSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGR 416

Query: 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--F 540
           + +A+ L  KI   G  P   +  +L D +   G   +A   L   E  + ++ PD+  F
Sbjct: 417 MKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLK--EMDQMKVVPDEVTF 474

Query: 541 ERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQT 583
             ++ G    G ++ A+ +   M+++G          LIS  +
Sbjct: 475 NTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYS 517



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 115/265 (43%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y   I    KE  LE+A  +L+KM E G+ P  VT   L+  Y   GNL+ A +  + + 
Sbjct: 264 YGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMV 323

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P    YN +I A     +      ++  M   G+      Y  L+  + +CG+V+
Sbjct: 324 REGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGNVK 383

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  + + M  +  QPT  + T L+    + G   QA   F+ ++R G  PD     ++I
Sbjct: 384 KAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALI 443

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             +     +D+A  +L E+++    P   T+  L+    R   +  A +L+ ++   G  
Sbjct: 444 DGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIK 503

Query: 500 PPFKIQVSLCDMYARAGIEKKALQA 524
           P      +L   Y++ G  K A + 
Sbjct: 504 PDHISYNTLISGYSKRGDMKDAFRV 528



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 69/303 (22%), Positives = 133/303 (43%), Gaps = 4/303 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V   + ++    K N  E A  +  +M    I   +VT  +++++  K G L +AKE  
Sbjct: 155 HVHACNDMLSLFLKSNRTEKAWVLYAEMFRMRIKSSVVTFNIMINVLCKEGKLKKAKEFI 214

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             + + G +P+   YN++I  Y + G+ +    + D+M   G++     Y + +    + 
Sbjct: 215 GLMEALGIKPNVVTYNTIIHGYCSRGRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKE 274

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A  +   M+    +PT  +   L++ Y   G+ + A    D M+R G  P     
Sbjct: 275 GKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTY 334

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +I A      +D+A  ++ E+ + G  P   TY +L++   R   + +A  L  ++  
Sbjct: 335 NMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMIS 394

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFL 553
            G  P      SL  + ++ G  K+A     F +  ++ + PD   F  +I+G  A G +
Sbjct: 395 KGIQPTRVTYTSLIYVLSKRGRMKQADDL--FEKIVRKGIFPDLIMFNALIDGHCANGNM 452

Query: 554 QDA 556
             A
Sbjct: 453 DRA 455



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 56/263 (21%), Positives = 111/263 (42%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  LI A  +    +DA      M   G++P +     ++ ++ K+   ++A   +  + 
Sbjct: 124 YDLLIRACCELKRGDDAFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAEMF 183

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
               +     +N MI      G+ K     + +M   GI+ +   Y  ++  +   G V 
Sbjct: 184 RMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVE 243

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
           GA  I ++M+    +P   +    +    + G  ++A    + M  +G +P      ++I
Sbjct: 244 GARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLI 303

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             Y  K  L+ A +   ++ ++G  P  +TY +L+  L     ++EA+ ++ ++SE G  
Sbjct: 304 DGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLV 363

Query: 500 PPFKIQVSLCDMYARAGIEKKAL 522
           P       L + Y R G  KKA 
Sbjct: 364 PDSVTYNILINGYCRCGNVKKAF 386



 Score = 39.3 bits (90), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 59/278 (21%), Positives = 111/278 (39%), Gaps = 28/278 (10%)

Query: 288 IVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV-NAGQPKLG 346
           I P ++ ST L  ++ K  +L     AF+ +   GF         + MA + +A   K  
Sbjct: 35  ITPSLI-STALTSLH-KTPDL-----AFQFVTHIGFGDLDIKSKCLAMAVISHAPNSKPS 87

Query: 347 MSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA 406
           + L+   I SG+    E+       F + G  RG   I   +  +          LL+ A
Sbjct: 88  LQLLKETINSGVYSIREV-------FNELGVARGVLGIKTYVLYD----------LLIRA 130

Query: 407 YGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG 466
             +    D A   FD M   G  P       M++ + K N  +KA  L  E+ +   +  
Sbjct: 131 CCELKRGDDAFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAEMFRMRIKSS 190

Query: 467 PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALG 526
             T+ ++++ L +   + +A++ +G +  LG  P      ++   Y   G  + A     
Sbjct: 191 VVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVEGARMIFD 250

Query: 527 FLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLME 564
            ++ +  +     +   I+G+   G L++A    G++E
Sbjct: 251 LMKCRGVKPDSYTYGSFISGMCKEGKLEEAS---GMLE 285


>gi|357123699|ref|XP_003563545.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Brachypodium distachyon]
          Length = 492

 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 125/278 (44%), Gaps = 2/278 (0%)

Query: 235 QNTQLYFKVAELVL--SEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDI 292
           ++  ++ K  +L++   E   + +V+ Y+ LID   K   L DA R+ +KM   GI PDI
Sbjct: 204 RDNGMWKKATDLIMEMQELGVELDVKIYNGLIDTFGKYGQLADARRLFEKMRAEGIKPDI 263

Query: 293 VTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDM 352
            T   L+  + + GN+ RA   F +++  G  PD K++ S+I      G+      L D 
Sbjct: 264 ATWNALIRWHCRVGNMKRALRFFAAMQEEGMYPDPKIFMSIISRLGEQGKWDELKKLFDK 323

Query: 353 MITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGD 412
           M   G++ S  +Y  L+  + Q G  R A +    ++ EE   +     +L  AY Q G 
Sbjct: 324 MRNRGLKESGAVYAVLVDIYGQYGRFRDAHECVAALKAEELHLSPSIFCVLANAYAQQGL 383

Query: 413 PDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTV 472
            +Q  +    M   G +P+      +I A+       +A+ +   ++  G  P   TYT 
Sbjct: 384 CEQTVNVLQLMEAEGIEPNLVMLNLLINAFSTAGRHLEAVAVFQHIKDSGMSPDVVTYTT 443

Query: 473 LVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCD 510
           L+    R++   +  ++  ++   G  P  K +  L D
Sbjct: 444 LMKGFMRVKKFEKVSEVYNEMERAGCTPDRKAREMLHD 481



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 145/316 (45%), Gaps = 4/316 (1%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           ++PS   +  L+  L      L  +   L +     + +   Y+ L++       L  A+
Sbjct: 84  MRPSAAAYARLIRALARAGRTLEAEALLLEMRHLGLRPDAAHYNALLEGLLARAHLCLAD 143

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
           R+L +M ++G+  +  T  +L+  Y++AG L+ +      ++  G Q D   Y++++  Y
Sbjct: 144 RLLLQMADDGVARNRRTYMLLLDAYARAGRLEDSWWVLGEMKRRGIQLDTAGYSTLVRLY 203

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
            + G  K    L+  M   G+E   +IY  L+ +F + G +  A ++   MR E  +P +
Sbjct: 204 RDNGMWKKATDLIMEMQELGVELDVKIYNGLIDTFGKYGQLADARRLFEKMRAEGIKPDI 263

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
            +   L+  + + G+  +A   F  M   G  PD +   S+I+  G++   D+   L  +
Sbjct: 264 ATWNALIRWHCRVGNMKRALRFFAAMQEEGMYPDPKIFMSIISRLGEQGKWDELKKLFDK 323

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG--KISELGEAPPFKIQVSLCDMYARA 515
           +   G +   A Y VLVD  G+     +A + +   K  EL  +P   I   L + YA+ 
Sbjct: 324 MRNRGLKESGAVYAVLVDIYGQYGRFRDAHECVAALKAEELHLSPS--IFCVLANAYAQQ 381

Query: 516 GIEKKALQALGFLEAK 531
           G+ ++ +  L  +EA+
Sbjct: 382 GLCEQTVNVLQLMEAE 397



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 91/418 (21%), Positives = 169/418 (40%), Gaps = 6/418 (1%)

Query: 153 YKIYGLDLSDPKWTEVAEKIHERGEMILPEEPKPITGKCKLITDKILSLEKEEDPSPLLA 212
           ++ Y  D+     +++A  +H   +M             +LI   +    +  +   LL 
Sbjct: 54  WESYNRDIQPHASSDLAHSLHVLADMEAAGMRPSAAAYARLIR-ALARAGRTLEAEALLL 112

Query: 213 EWKEL-LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKEN 271
           E + L L+P    +  LL+ L  +          L ++++    N R Y  L+DA+A+  
Sbjct: 113 EMRHLGLRPDAAHYNALLEGLLARAHLCLADRLLLQMADDGVARNRRTYMLLLDAYARAG 172

Query: 272 CLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYN 331
            LED+  +L +M   GI  D    + LV +Y   G   +A +    ++  G + D K+YN
Sbjct: 173 RLEDSWWVLGEMKRRGIQLDTAGYSTLVRLYRDNGMWKKATDLIMEMQELGVELDVKIYN 232

Query: 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391
            +I  +   GQ      L + M   GI+     + AL+R   + G+++ A +    M+ E
Sbjct: 233 GLIDTFGKYGQLADARRLFEKMRAEGIKPDIATWNALIRWHCRVGNMKRALRFFAAMQEE 292

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
              P  +    ++   G+ G  D+ +  FD M   G K      A ++  YG+      A
Sbjct: 293 GMYPDPKIFMSIISRLGEQGKWDELKKLFDKMRNRGLKESGAVYAVLVDIYGQYGRFRDA 352

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
              +  L+ +     P+ + VL +   +  L  +   +L  +   G  P   +   L + 
Sbjct: 353 HECVAALKAEELHLSPSIFCVLANAYAQQGLCEQTVNVLQLMEAEGIEPNLVMLNLLINA 412

Query: 512 YARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQG 567
           ++ AG   +A+    F   K   M PD   +  ++ G +     +    V+  ME  G
Sbjct: 413 FSTAGRHLEAVAV--FQHIKDSGMSPDVVTYTTLMKGFMRVKKFEKVSEVYNEMERAG 468


>gi|167998294|ref|XP_001751853.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162696951|gb|EDQ83288.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 657

 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 126/279 (45%), Gaps = 1/279 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E+ F  +   +S L+ A A     E A  +++KM EN   P++V+   L+  Y K GN
Sbjct: 374 IQEKGFTPDFITWSSLLGACANAGQAEKAVAVMEKMKENNFTPNVVSWCYLLKAYQKTGN 433

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            ++ +E F S+ + G  P++  +NS++ AY    Q K  +  ++     G++     +  
Sbjct: 434 WEKTEEIFHSMLNSGCPPNEVAWNSLLSAYEKGRQWKRVLYTIEKQEELGVKLDVVAWST 493

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
            + + A+ G  + A +    M+    QP + + + L++AYG  G  ++A S F  M+  G
Sbjct: 494 TISALAKAGQWQLAEKKIRQMKQSGCQPNIVTYSSLIKAYGDVGLWNKAESVFKSMLLEG 553

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLE-LEKDGFEPGPATYTVLVDWLGRLQLINEA 486
            +PD +   +++ AY K   LDK +      + + G +P    Y  +            A
Sbjct: 554 IRPDSKACCALLRAYAKGRQLDKVMFFFDSMMPRYGIKPDKYAYAAIFWACWTCGEWQRA 613

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
              +  +   G  P   I  +L  MY   G   KA++ L
Sbjct: 614 ADYMENMEAAGCTPDTMIYTTLITMYEAHGQVDKAMEIL 652



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 71/332 (21%), Positives = 139/332 (41%), Gaps = 7/332 (2%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F   + +++++  A A+     ++  +L+ M E G  P +     L+  Y K  N + A 
Sbjct: 309 FSFAIGEFTEMQWACARARNSRESLGLLQAMIEQGCEPRLENYNALLCAYEKTANWEEAV 368

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
                ++  GF PD   ++S++ A  NAGQ +  +++++ M  +    +   +  LL+++
Sbjct: 369 RTVVWIQEKGFTPDFITWSSLLGACANAGQAEKAVAVMEKMKENNFTPNVVSWCYLLKAY 428

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + G+     +I + M      P   +   L+ AY +     +     +    LG K D 
Sbjct: 429 QKTGNWEKTEEIFHSMLNSGCPPNEVAWNSLLSAYEKGRQWKRVLYTIEKQEELGVKLDV 488

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
              ++ I+A  K      A   + ++++ G +P   TY+ L+   G + L N+AE +   
Sbjct: 489 VAWSTTISALAKAGQWQLAEKKIRQMKQSGCQPNIVTYSSLIKAYGDVGLWNKAESVFKS 548

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG--PDDFER--IINGLL 548
           +   G  P  K   +L   YA+    ++  + + F ++   + G  PD +    I     
Sbjct: 549 MLLEGIRPDSKACCALLRAYAKG---RQLDKVMFFFDSMMPRYGIKPDKYAYAAIFWACW 605

Query: 549 AGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
             G  Q A      MEA G      +   LI+
Sbjct: 606 TCGEWQRAADYMENMEAAGCTPDTMIYTTLIT 637



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 59/285 (20%), Positives = 121/285 (42%), Gaps = 4/285 (1%)

Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311
           S + N    + LI        L +A ++ + M + GI   I T   L+    + G  D A
Sbjct: 203 SVEPNAHVCTTLIAVLGYGRRLPEALKLFRWMEKQGIERPIYTFNALMVACGRCGAGDTA 262

Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
            E FE ++  G  PD   +  ++ A   AG+ K   S +++M   G   +   +  +  +
Sbjct: 263 VELFEEMKELGLAPDNITFRGLVSATTAAGKWKAAQSFINLMQAGGFSFAIGEFTEMQWA 322

Query: 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
            A+  + R +  +   M  +  +P LE+   L+ AY +  + ++A     ++   G  PD
Sbjct: 323 CARARNSRESLGLLQAMIEQGCEPRLENYNALLCAYEKTANWEEAVRTVVWIQEKGFTPD 382

Query: 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
               +S++ A       +KA+ ++ +++++ F P   ++  L+    +     + E++  
Sbjct: 383 FITWSSLLGACANAGQAEKAVAVMEKMKENNFTPNVVSWCYLLKAYQKTGNWEKTEEIFH 442

Query: 492 KISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG 536
            +   G  P      SL   Y +    K+ L  +     K+E++G
Sbjct: 443 SMLNSGCPPNEVAWNSLLSAYEKGRQWKRVLYTI----EKQEELG 483



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/300 (20%), Positives = 114/300 (38%), Gaps = 35/300 (11%)

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           +  ++ L+ A  +    + A  + ++M E G+ PD +T   LV   + AG    A+    
Sbjct: 243 IYTFNALMVACGRCGAGDTAVELFEEMKELGLAPDNITFRGLVSATTAAGKWKAAQSFIN 302

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF---- 372
            +++ GF      +  M  A   A   +  + L+  MI  G E   E Y ALL ++    
Sbjct: 303 LMQAGGFSFAIGEFTEMQWACARARNSRESLGLLQAMIEQGCEPRLENYNALLCAYEKTA 362

Query: 373 -------------------------------AQCGDVRGAGQITNIMRIEEFQPTLESCT 401
                                          A  G    A  +   M+   F P + S  
Sbjct: 363 NWEEAVRTVVWIQEKGFTPDFITWSSLLGACANAGQAEKAVAVMEKMKENNFTPNVVSWC 422

Query: 402 LLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD 461
            L++AY + G+ ++    F  M+  G  P++    S+++AY K     + L  + + E+ 
Sbjct: 423 YLLKAYQKTGNWEKTEEIFHSMLNSGCPPNEVAWNSLLSAYEKGRQWKRVLYTIEKQEEL 482

Query: 462 GFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKA 521
           G +     ++  +  L +      AE+ + ++ + G  P      SL   Y   G+  KA
Sbjct: 483 GVKLDVVAWSTTISALAKAGQWQLAEKKIRQMKQSGCQPNIVTYSSLIKAYGDVGLWNKA 542



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 112/284 (39%), Gaps = 7/284 (2%)

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           + + +KL+        L   E I+  ++E G+  D+ +  V+V    +  N D A   F 
Sbjct: 138 LHNLAKLVAVRVASEDLGSDEDIMGVVHETGLRVDVRSMNVVVWQLGQMRNWDAASRVFR 197

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
           + RS   +P+  V  ++I       +    + L   M   GIER    + AL+ +  +CG
Sbjct: 198 AFRSASVEPNAHVCTTLIAVLGYGRRLPEALKLFRWMEKQGIERPIYTFNALMVACGRCG 257

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
               A ++   M+     P   +   LV A   AG    A+S  + M   G         
Sbjct: 258 AGDTAVELFEEMKELGLAPDNITFRGLVSATTAAGKWKAAQSFINLMQAGGFSFAIGEFT 317

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
            M  A  +     ++L LL  + + G EP    Y  L+    +     EA + +  I E 
Sbjct: 318 EMQWACARARNSRESLGLLQAMIEQGCEPRLENYNALLCAYEKTANWEEAVRTVVWIQEK 377

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF 540
           G  P F    SL    A AG  +KA+  +       E+M  ++F
Sbjct: 378 GFTPDFITWSSLLGACANAGQAEKAVAVM-------EKMKENNF 414



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/287 (19%), Positives = 114/287 (39%), Gaps = 10/287 (3%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           V+ E   + +VR  + ++    +    + A R+ +      + P+    T L+ +     
Sbjct: 163 VVHETGLRVDVRSMNVVVWQLGQMRNWDAASRVFRAFRSASVEPNAHVCTTLIAVLGYGR 222

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            L  A + F  +   G +     +N++++A    G     + L + M   G+      + 
Sbjct: 223 RLPEALKLFRWMEKQGIERPIYTFNALMVACGRCGAGDTAVELFEEMKELGLAPDNITFR 282

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+ +    G  + A    N+M+   F   +   T +  A  +A +  ++      MI  
Sbjct: 283 GLVSATTAAGKWKAAQSFINLMQAGGFSFAIGEFTEMQWACARARNSRESLGLLQAMIEQ 342

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G +P      +++ AY K    ++A+  ++ +++ GF P   T++ L   LG      +A
Sbjct: 343 GCEPRLENYNALLCAYEKTANWEEAVRTVVWIQEKGFTPDFITWSSL---LGACANAGQA 399

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE 533
           E+ +  + ++ E       VS C +        KA Q  G  E  +E
Sbjct: 400 EKAVAVMEKMKENNFTPNVVSWCYLL-------KAYQKTGNWEKTEE 439


>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 1032

 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 122/276 (44%), Gaps = 15/276 (5%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E+  + N   Y   I+ ++K   ++ AER  K M  +GIVP+ V  T+L+  +   GN
Sbjct: 547 MGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGN 606

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
              A   F+ +   G  PD + Y+++I +    G+ K  M +    + +G+     +Y +
Sbjct: 607 TVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNS 666

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+  F + GD+  A Q+ + M      P +     L+    + G+  +AR  FD +    
Sbjct: 667 LISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKD 726

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR-------L 480
             PD    +++I  Y K   L +A  L  E+   G  P    Y +L+D  G+       L
Sbjct: 727 LVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKAL 786

Query: 481 QLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
            L +EA+Q       +G    F    SL D + + G
Sbjct: 787 SLFHEAQQ-----KSVGSLSAFN---SLIDSFCKHG 814



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 96/401 (23%), Positives = 169/401 (42%), Gaps = 18/401 (4%)

Query: 157 GLDLSDPKWTEVAEKIHERGEM---------ILPEEPKPITGKCKLITDKILSLEKEEDP 207
           GL L+   +  +   I + GEM         +L    +P T    L+ D  L        
Sbjct: 376 GLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKA 435

Query: 208 SPLLAEWK-ELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSE---ESFQTNVRDYSKL 263
             LLAE K   L PS   +  L+  L   +     + A  VL +      + NV  Y  L
Sbjct: 436 CELLAEMKARKLTPSPFTYSVLISGLCHSSD---LQKANEVLDQMIRNGVKPNVFMYGTL 492

Query: 264 IDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGF 323
           I A+ +E+  E A  +LK M  NG++PD+     L+    +A  ++ AK     +   G 
Sbjct: 493 IKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGI 552

Query: 324 QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQ 383
           +P+   Y + I  Y  +G+ ++       M++SGI  +  IY  L++     G+   A  
Sbjct: 553 KPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALS 612

Query: 384 ITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYG 443
               M  +   P + + + ++ +  + G   +A   F   ++ G  PD     S+I+ + 
Sbjct: 613 TFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFC 672

Query: 444 KKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFK 503
           K+  ++KA  L  E+  +G  P    Y  L++ L +L  + +A +L  +I E    P   
Sbjct: 673 KEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVV 732

Query: 504 IQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERII 544
              ++ D Y ++G   +A +   F E   + + PD +   I
Sbjct: 733 TYSTIIDGYCKSGNLTEAFKL--FDEMISKGISPDGYIYCI 771



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 127/257 (49%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+D   K+   ++A+ I + M  +G+ P+  T T L+  + K GN++ A    + + 
Sbjct: 314 YTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMI 373

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G + +   YN+MI     AG+    MSL + M+ +G+E     Y  L+  + +  D+ 
Sbjct: 374 TRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMA 433

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++   M+  +  P+  + ++L+     + D  +A    D MIR G KP+     ++I
Sbjct: 434 KACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLI 493

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            AY +++  + A+ LL  +  +G  P    Y  L+  L R + + EA+ LL  + E G  
Sbjct: 494 KAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIK 553

Query: 500 PPFKIQVSLCDMYARAG 516
           P      +  ++Y+++G
Sbjct: 554 PNAHTYGAFINLYSKSG 570



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 145/323 (44%), Gaps = 6/323 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS LI      + L+ A  +L +M  NG+ P++     L+  Y +    + A E  + + 
Sbjct: 454 YSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMI 513

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQP-KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
           ++G  PD   YN +I+    A +  +  M LVDM    GI+ +   Y A +  +++ G++
Sbjct: 514 ANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMG-EKGIKPNAHTYGAFINLYSKSGEI 572

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
           + A +    M      P     T+L++ +   G+  +A S F  M+  G  PD R  +++
Sbjct: 573 QVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAI 632

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           I +  K     +A+ + L+  K G  P    Y  L+    +   I +A QL  ++   G 
Sbjct: 633 IHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGI 692

Query: 499 APPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDA 556
            P   +  +L +   + G   KA +   F E +++ + PD   +  II+G    G L +A
Sbjct: 693 NPNIVVYNTLINGLCKLGEVTKAREL--FDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEA 750

Query: 557 QRVHGLMEAQGFAASERLKVALI 579
            ++   M ++G +    +   LI
Sbjct: 751 FKLFDEMISKGISPDGYIYCILI 773



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 133/327 (40%), Gaps = 4/327 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N   Y+ LID   KE  +E+A RI  +M   G+  ++VT   ++   +KAG + +A   F
Sbjct: 345 NRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLF 404

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G +PD   YN +I  Y+ +        L+  M    +  S   Y  L+      
Sbjct: 405 NEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHS 464

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
            D++ A ++ + M     +P +     L++AY Q    + A      MI  G  PD  C 
Sbjct: 465 SDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCY 524

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +I    +   +++A  LL+++ + G +P   TY   ++   +   I  AE+    +  
Sbjct: 525 NCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLS 584

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFL 553
            G  P   I   L   +   G   +AL     +  K   + PD   +  II+ L   G  
Sbjct: 585 SGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEK--GLIPDIRAYSAIIHSLSKNGKT 642

Query: 554 QDAQRVHGLMEAQGFAASERLKVALIS 580
           ++A  V       G      L  +LIS
Sbjct: 643 KEAMGVFLKFLKTGVVPDVFLYNSLIS 669



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 87/175 (49%)

Query: 256  NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
            N+  Y+ LIDA+ K   +E+AE++   M    I+P+ +T T L+  Y++ GN  +    F
Sbjct: 834  NIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLF 893

Query: 316  ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
            + + + G   D   Y  M  AY   G+    + L++  +  GI+  ++++ AL+    + 
Sbjct: 894  KDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKE 953

Query: 376  GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
              +    ++ + M  EE   + ++C  L+  + ++G+ D+A      M RLG  P
Sbjct: 954  KQISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKVLGVMQRLGWVP 1008



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 111/267 (41%), Gaps = 34/267 (12%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI    KE  +E A ++  +M  NGI P+IV    L++   K G + +A+E F+ + 
Sbjct: 664 YNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIE 723

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL------------- 366
                PD   Y+++I  Y  +G       L D MI+ GI     IY              
Sbjct: 724 EKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLE 783

Query: 367 ---------------------ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVE 405
                                +L+ SF + G V  A ++ + M  ++  P + + T+L++
Sbjct: 784 KALSLFHEAQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILID 843

Query: 406 AYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
           AYG+A   ++A   F  M      P+     S++ +Y +     K ++L  ++E  G   
Sbjct: 844 AYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIAC 903

Query: 466 GPATYTVLVDWLGRLQLINEAEQLLGK 492
               Y V+     +     EA +LL K
Sbjct: 904 DAIAYGVMASAYCKEGKSLEALKLLNK 930



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 68/317 (21%), Positives = 127/317 (40%), Gaps = 9/317 (2%)

Query: 255 TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA 314
           +N+  +   ID       L +A  +       G  P ++    L+    KA  +    + 
Sbjct: 170 SNLTVFDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKV 229

Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE----IYLALLR 370
           + S+      PD   Y ++I A+   G    G      M+ S +E+  +     Y A + 
Sbjct: 230 YGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGK-----MVLSEMEKECKPNLFTYNAFIG 284

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
              Q G V  A ++  +M  +   P   + TLLV+ + +     +A+  F+ M   G  P
Sbjct: 285 GLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNP 344

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           +     ++I  + K+  +++AL +  E+   G +    TY  ++  + +   + +A  L 
Sbjct: 345 NRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLF 404

Query: 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAG 550
            ++   G  P       L D Y ++    KA + L  ++A+K    P  +  +I+GL   
Sbjct: 405 NEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHS 464

Query: 551 GFLQDAQRVHGLMEAQG 567
             LQ A  V   M   G
Sbjct: 465 SDLQKANEVLDQMIRNG 481


>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
 gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 110/224 (49%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ +I+   KE  L+ A     +M + GI+P++VT   ++    KA  +D+A E  
Sbjct: 198 DVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVL 257

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
            S+  +G  P+ + YNS++  Y ++GQPK  +  +  M + G+E     Y +L+    + 
Sbjct: 258 TSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKN 317

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G    A ++ + M     +P + +   L++ Y   G   +     D M+R G  P+    
Sbjct: 318 GRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVF 377

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
           + +I AY K+  +D+A+ +  ++ + G  P   TY  ++  L +
Sbjct: 378 SILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCK 421



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 89/383 (23%), Positives = 169/383 (44%), Gaps = 12/383 (3%)

Query: 195 TDKILSLEKEEDPSPLLAEWKELLQ----PSRIDWINLLDRLREQNTQLYFKVAELVLS- 249
           T  I    KE D       + E+L     P+ + + +++  L +   Q   K  E++ S 
Sbjct: 203 TTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCK--AQAMDKAMEVLTSM 260

Query: 250 -EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNL 308
            +     N R Y+ ++  +      ++A   LKKM+ +G+ PD+VT   L+    K G  
Sbjct: 261 VKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRC 320

Query: 309 DRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLAL 368
             A++ F+S+   G +P+   Y +++  Y   G       L+D+M+ +GI  +  ++  L
Sbjct: 321 TEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSIL 380

Query: 369 LRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH 428
           + ++A+ G V  A  + + MR +   P   +   ++    ++G  + A   F+ MI    
Sbjct: 381 ICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERL 440

Query: 429 KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQ 488
            P +    S+I +    +  DKA  L+LE+   G       +  ++D   +   + E+E+
Sbjct: 441 SPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEK 500

Query: 489 LLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIING 546
           L   +  +G  P      +L D Y  AG   +A + L  + +    M PD   +  +ING
Sbjct: 501 LFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVG--MKPDCVTYNTLING 558

Query: 547 LLAGGFLQDAQRVHGLMEAQGFA 569
                 ++DA  +   ME+ G +
Sbjct: 559 YCKISRMEDALVLFREMESSGVS 581



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 140/314 (44%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           +S LI A+AK+  ++ A  +  KM + G+ PD VT   ++ +  K+G ++ A   FE + 
Sbjct: 377 FSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMI 436

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
                P   VYNS+I +     +      L+  M+  GI      + +++ S  + G V 
Sbjct: 437 DERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVI 496

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            + ++ ++M     +P + + + L++ Y  AG  D+A      M+ +G KPD     ++I
Sbjct: 497 ESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLI 556

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             Y K + ++ AL L  E+E  G  P   TY +++  L + +    A++L   I+E G  
Sbjct: 557 NGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQ 616

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
                   +     +  +  +AL+    L     Q+    F  +I  LL  G   +A+ +
Sbjct: 617 LELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDL 676

Query: 560 HGLMEAQGFAASER 573
              + A G     R
Sbjct: 677 FAALSANGLVPDVR 690



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 64/296 (21%), Positives = 138/296 (46%), Gaps = 6/296 (2%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENG--IVPDIVTSTVLVHMYSKAGNLDRAKE 313
           NV  Y+ L+     EN  ++A  +L+ M ++G    PD+V+ T +++ + K G+LD+A  
Sbjct: 161 NVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYG 220

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            +  +   G  P+   YNS+I A   A      M ++  M+ +G+  +   Y +++  + 
Sbjct: 221 TYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYC 280

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
             G  + A      M  +  +P + +   L++   + G   +AR  FD M + G KP+  
Sbjct: 281 SSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEIT 340

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
              +++  Y  K  L +   LL  + ++G  P    +++L+    +   +++A  +  K+
Sbjct: 341 TYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKM 400

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGL 547
            + G  P      ++  +  ++G  + A++   F +   E++ P +  +  +I+ L
Sbjct: 401 RQQGLNPDTVTYGTVIGILCKSGRVEDAMRY--FEQMIDERLSPGNIVYNSLIHSL 454



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 99/218 (45%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++ +ID+H KE  + ++E++   M   G+ P+I+T + L+  Y  AG +D A +   S+ 
Sbjct: 482 FNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMV 541

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           S G +PD   YN++I  Y    + +  + L   M +SG+      Y  +L+   Q     
Sbjct: 542 SVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTA 601

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++   +     Q  L +  +++    +    D+A   F  +     + + R    MI
Sbjct: 602 AAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMI 661

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
            A  K    D+A +L   L  +G  P   TY+++ + L
Sbjct: 662 GALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENL 699



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 1/185 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  YS LID +     +++A ++L  M   G+ PD VT   L++ Y K   ++ A   F
Sbjct: 513 NIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLF 572

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             + S G  PD   YN ++       +      L   +  SG +     Y  +L    + 
Sbjct: 573 REMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKN 632

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
                A ++   + + + Q    +  +++ A  + G  D+A+  F  +   G  PD R T
Sbjct: 633 NLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVR-T 691

Query: 436 ASMIA 440
            S++A
Sbjct: 692 YSLMA 696



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 92/216 (42%), Gaps = 11/216 (5%)

Query: 187 ITGKCKLITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKVAE 245
           I G CK+         + ED   L  E +   + P  I +  +L  L +       K   
Sbjct: 556 INGYCKI--------SRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELY 607

Query: 246 LVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKA 305
           + ++E   Q  +  Y+ ++    K N  ++A R+ + +    +  +  T  +++    K 
Sbjct: 608 VGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKV 667

Query: 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
           G  D AK+ F +L ++G  PD + Y+ M    +  G  +    L   M  +G   +  + 
Sbjct: 668 GRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRML 727

Query: 366 LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCT 401
            +++R   Q GD+  AG  T +  I+E   +LE+ T
Sbjct: 728 NSIVRKLLQRGDITRAG--TYLFMIDEKHFSLEAST 761



 Score = 45.4 bits (106), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 110/257 (42%), Gaps = 23/257 (8%)

Query: 325 PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQI 384
           P+   Y  +I +   AG+  LG + +  +I  G       +  LL+    C D R +  +
Sbjct: 89  PNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGL--CADKRTSDAM 146

Query: 385 TNIMRIEEFQPTLESCTLLVEAYG--QAGDPDQARSNFDYMIRLGHKPDD--RC------ 434
             ++R    + T   C   V +Y     G  D+ RS  + +  L   PDD   C      
Sbjct: 147 DIVLR----RMTQLGCIPNVFSYNILLKGLCDENRSQ-EALELLQMMPDDGGDCPPDVVS 201

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
             ++I  + K+  LDKA     E+   G  P   TY  ++  L + Q +++A ++L  + 
Sbjct: 202 YTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMV 261

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFL-EAKKEQMGPD--DFERIINGLLAGG 551
           + G  P  +   S+   Y  +G  K   +A+GFL +   + + PD   +  +++ L   G
Sbjct: 262 KNGVMPNCRTYNSIVHGYCSSGQPK---EAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNG 318

Query: 552 FLQDAQRVHGLMEAQGF 568
              +A+++   M  +G 
Sbjct: 319 RCTEARKMFDSMTKRGL 335


>gi|297848576|ref|XP_002892169.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338011|gb|EFH68428.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 662

 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 143/335 (42%), Gaps = 38/335 (11%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F   V   + LI +  K   +E+   + +KM ENGI P + T   L++    A  +D A+
Sbjct: 183 FPMTVSPGNSLIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAE 242

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
             FE + S   +PD   YN+MI  Y  AGQ +  +  + +M T G+E  +  Y+ ++++ 
Sbjct: 243 RVFEVMESGRIKPDVVTYNTMIKGYCKAGQTQKALEKLRVMETKGLEADKITYMTMIQAC 302

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
               D      +   M  +  Q    + +L++    + G  ++  + F+ MIR G KP+ 
Sbjct: 303 YADSDFSSCVALYQEMDEKGLQVPPHAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNV 362

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTV-------------------- 472
                +I  Y K   ++ A+ LL  +  +GF P   TY+V                    
Sbjct: 363 AIYTVLIDGYAKTGSVEDAIRLLHRMIDEGFNPDVVTYSVVVNGLCKNGRVEEAMDYFQT 422

Query: 473 ---------------LVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI 517
                          L+D LG+   ++EAE+L  ++SE G         +L D + + G 
Sbjct: 423 CRFNGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHG- 481

Query: 518 EKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
             K  +AL   +  +E+ G D        L++G F
Sbjct: 482 --KVDEALALFKRMEEEEGCDQTVYTYTILISGMF 514



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 133/286 (46%), Gaps = 9/286 (3%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ LID +AK   +EDA R+L +M + G  PD+VT +V+V+   K G ++ A + F
Sbjct: 361 NVAIYTVLIDGYAKTGSVEDAIRLLHRMIDEGFNPDVVTYSVVVNGLCKNGRVEEAMDYF 420

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           ++ R +G   +   Y+S+I     AG+      L + M   G  R    Y AL+ +F + 
Sbjct: 421 QTCRFNGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKH 480

Query: 376 GDVRGAGQITNIMRIEE-FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
           G V  A  +   M  EE    T+ + T+L+    +    ++A   +D MI  G  P   C
Sbjct: 481 GKVDEALALFKRMEEEEGCDQTVYTYTILISGMFKEHRNEEALKLWDMMIDKGITPTAAC 540

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
             ++         + +A  +L EL   G     A    +++ L +   I EA +L   I+
Sbjct: 541 LRALSTGLCLSGKVARACKILDELAPMGVILDAACED-MINTLCKAGRIKEACKLADGIT 599

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK----KEQMG 536
           E G   P +I+  + +   + G   KA  A+  + +K     E+MG
Sbjct: 600 ERGREVPGRIRTVMINALRKVG---KADLAMKLMHSKIGIGYERMG 642



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/284 (21%), Positives = 115/284 (40%), Gaps = 4/284 (1%)

Query: 298 LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG 357
           LV + + A ++DR +     +R   F       NS+I ++   G  +  + +   M  +G
Sbjct: 158 LVDVLALAKDVDRIRFICSEIRKFEFPMTVSPGNSLIKSFGKLGMVEELLWVWRKMKENG 217

Query: 358 IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
           IE +   Y  L+        V  A ++  +M     +P + +   +++ Y +AG   +A 
Sbjct: 218 IEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDVVTYNTMIKGYCKAGQTQKAL 277

Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
                M   G + D     +MI A    +     + L  E+++ G +  P  +++++  L
Sbjct: 278 EKLRVMETKGLEADKITYMTMIQACYADSDFSSCVALYQEMDEKGLQVPPHAFSLVIGGL 337

Query: 478 GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP 537
            +   +NE   +   +   G  P   I   L D YA+ G  + A++ L       E   P
Sbjct: 338 CKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKTGSVEDAIRLLH--RMIDEGFNP 395

Query: 538 D--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
           D   +  ++NGL   G +++A          G A +     +LI
Sbjct: 396 DVVTYSVVVNGLCKNGRVEEAMDYFQTCRFNGLAINSMFYSSLI 439


>gi|356530296|ref|XP_003533718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Glycine max]
          Length = 830

 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 89/395 (22%), Positives = 164/395 (41%), Gaps = 45/395 (11%)

Query: 218 LQPSRIDWINLLDRL----REQNT-QLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC 272
           + P+ I +  ++D      RE +  +L+ K+ +L  +      NV  Y+ ++    K++ 
Sbjct: 388 VMPNAITYTTVIDAYGKAGREDDALRLFSKMKDLGCAP-----NVYTYNSVLAMLGKKSR 442

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
            ED  ++L +M  NG  P+  T   ++ + S+ G  +   +    +++ GF+PDK  +N+
Sbjct: 443 TEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNT 502

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I +Y   G       +   M+ SG       Y ALL + A  GD + A  +   M+ + 
Sbjct: 503 LISSYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLNALAHRGDWKAAESVIQDMQTKG 562

Query: 393 FQPTLESCTLLVEAYGQAGD-----------------PDQ------ARSN---------- 419
           F+P   S +LL+  Y +AG+                 P          SN          
Sbjct: 563 FKPNETSYSLLLHCYSKAGNVRGIEKVEKEIYDGQVFPSWILLRTLVLSNHKCRHLRGME 622

Query: 420 --FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
             FD + + G+KPD     SM++ + +  +  KA  +L  + + G +P   TY  L+D  
Sbjct: 623 RAFDQLQKYGYKPDLVVINSMLSMFSRNKMFSKAREMLHFIHECGLQPNLFTYNCLMDLY 682

Query: 478 GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP 537
            R     +AE++L  I      P      ++   + R G+ ++A++ L  +  K  Q   
Sbjct: 683 VREDECWKAEEVLKGIQNSVPEPDVVSYNTVIKGFCRKGLMQEAIRVLSEMTTKGIQPTI 742

Query: 538 DDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572
             +   ++G        +A  V   M       SE
Sbjct: 743 VTYNTFLSGYAGMELFDEANEVIRFMIEHNCRPSE 777



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 100/422 (23%), Positives = 177/422 (41%), Gaps = 49/422 (11%)

Query: 197 KILSLEKEEDPSPLLAEWKELL----QPSRID--WINLLDRL--REQNTQLYFKVAELVL 248
           K L L    + + LL EW  L     Q  R+D   + L+ R+  RE    +  K+ +L+ 
Sbjct: 149 KALDLSGNWERALLLFEWGWLHFGSDQNLRLDNQVVELMVRILGRESQHSIASKLFDLI- 207

Query: 249 SEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN- 307
             E +  +VR Y+ ++ A+A+    + A  +  KM   G+ P +VT  V++ +Y K G  
Sbjct: 208 PVEKYSLDVRAYTTILHAYARSGKYKRAIDLFDKMEGIGLDPTLVTYNVMLDVYGKMGRS 267

Query: 308 -----------------------------------LDRAKEAFESLRSHGFQPDKKVYNS 332
                                              LD A++    L+ +G++P   +YNS
Sbjct: 268 WGRILELLDEMRSKGLEFDEFTCSTVISACGREGMLDEARKFLAELKLNGYKPGTVMYNS 327

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           M+  +  AG     +S++  M  +        Y  L  ++ + G +     + + M  + 
Sbjct: 328 MLQVFGKAGIYTEALSILKEMEDNNCPPDSITYNELAATYVRAGFLDEGMAVIDTMTSKG 387

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P   + T +++AYG+AG  D A   F  M  LG  P+     S++A  GKK+  +  +
Sbjct: 388 VMPNAITYTTVIDAYGKAGREDDALRLFSKMKDLGCAPNVYTYNSVLAMLGKKSRTEDVI 447

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
            +L E++ +G  P  AT+  ++         N   ++L ++   G  P      +L   Y
Sbjct: 448 KVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISSY 507

Query: 513 ARAGIEKKALQALGFLEAKKEQMGP--DDFERIINGLLAGGFLQDAQRVHGLMEAQGFAA 570
           AR G E  + +  G  E  K    P    +  ++N L   G  + A+ V   M+ +GF  
Sbjct: 508 ARCGSEVDSAKMYG--EMVKSGFTPCVTTYNALLNALAHRGDWKAAESVIQDMQTKGFKP 565

Query: 571 SE 572
           +E
Sbjct: 566 NE 567



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/257 (22%), Positives = 102/257 (39%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ ++    K     +A  ILK+M +N   PD +T   L   Y +AG LD      +++ 
Sbjct: 325 YNSMLQVFGKAGIYTEALSILKEMEDNNCPPDSITYNELAATYVRAGFLDEGMAVIDTMT 384

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           S G  P+   Y ++I AY  AG+    + L   M   G   +   Y ++L    +     
Sbjct: 385 SKGVMPNAITYTTVIDAYGKAGREDDALRLFSKMKDLGCAPNVYTYNSVLAMLGKKSRTE 444

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
              ++   M++    P   +   ++    + G  +        M   G +PD     ++I
Sbjct: 445 DVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLI 504

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
           ++Y +      +  +  E+ K GF P   TY  L++ L        AE ++  +   G  
Sbjct: 505 SSYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLNALAHRGDWKAAESVIQDMQTKGFK 564

Query: 500 PPFKIQVSLCDMYARAG 516
           P       L   Y++AG
Sbjct: 565 PNETSYSLLLHCYSKAG 581



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/357 (19%), Positives = 148/357 (41%), Gaps = 38/357 (10%)

Query: 203 KEEDPSPLLAEWK-ELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYS 261
           + ED   +L E K     P+R  W  +L    E+    Y       +    F+ +   ++
Sbjct: 442 RTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFN 501

Query: 262 KLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSH 321
            LI ++A+     D+ ++  +M ++G  P + T   L++  +  G+   A+   + +++ 
Sbjct: 502 TLISSYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLNALAHRGDWKAAESVIQDMQTK 561

Query: 322 GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL-ALLRSFAQCGDVRG 380
           GF+P++  Y+ ++  Y  AG  + G+  V+  I  G      I L  L+ S  +C  +RG
Sbjct: 562 GFKPNETSYSLLLHCYSKAGNVR-GIEKVEKEIYDGQVFPSWILLRTLVLSNHKCRHLRG 620

Query: 381 AGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD--------- 431
             +  + ++   ++P L     ++  + +     +AR    ++   G +P+         
Sbjct: 621 MERAFDQLQKYGYKPDLVVINSMLSMFSRNKMFSKAREMLHFIHECGLQPNLFTYNCLMD 680

Query: 432 -----DRC---------------------TASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
                D C                       ++I  + +K L+ +A+ +L E+   G +P
Sbjct: 681 LYVREDECWKAEEVLKGIQNSVPEPDVVSYNTVIKGFCRKGLMQEAIRVLSEMTTKGIQP 740

Query: 466 GPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522
              TY   +     ++L +EA +++  + E    P       L D Y +AG  ++A+
Sbjct: 741 TIVTYNTFLSGYAGMELFDEANEVIRFMIEHNCRPSELTYKILVDGYCKAGKHEEAM 797



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 67/296 (22%), Positives = 124/296 (41%), Gaps = 41/296 (13%)

Query: 241 FKVAELVLSE---ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTV 297
           +K AE V+ +   + F+ N   YS L+  ++K   +   E++ K++ +  + P  +    
Sbjct: 548 WKAAESVIQDMQTKGFKPNETSYSLLLHCYSKAGNVRGIEKVEKEIYDGQVFPSWILLRT 607

Query: 298 LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG 357
           LV    K  +L   + AF+ L+ +G++PD  V NSM           L M   + M +  
Sbjct: 608 LVLSNHKCRHLRGMERAFDQLQKYGYKPDLVVINSM-----------LSMFSRNKMFSKA 656

Query: 358 IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
            E        +L    +CG                 QP L +   L++ Y +  +  +A 
Sbjct: 657 RE--------MLHFIHECG----------------LQPNLFTYNCLMDLYVREDECWKAE 692

Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
                +     +PD     ++I  + +K L+ +A+ +L E+   G +P   TY   +   
Sbjct: 693 EVLKGIQNSVPEPDVVSYNTVIKGFCRKGLMQEAIRVLSEMTTKGIQPTIVTYNTFLSGY 752

Query: 478 GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE 533
             ++L +EA +++  + E    P       L D Y +AG   K  +A+ F+   KE
Sbjct: 753 AGMELFDEANEVIRFMIEHNCRPSELTYKILVDGYCKAG---KHEEAMDFVTKIKE 805


>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22470, mitochondrial; Flags: Precursor
 gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
 gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 619

 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 105/229 (45%), Gaps = 1/229 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LID   KENCL +A ++   M   G  PDIVT ++L++ Y KA  +D     F  + 
Sbjct: 353 YNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREIS 412

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           S G  P+   YN++++ +  +G+      L   M++ G+  S   Y  LL      G++ 
Sbjct: 413 SKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELN 472

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A +I   M+       +    +++     A   D A S F  +   G KPD      MI
Sbjct: 473 KALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMI 532

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV-DWLGRLQLINEAE 487
               KK  L +A  L  ++++DG  P   TY +L+   LG   LI+  E
Sbjct: 533 GGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVE 581



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 131/320 (40%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E  FQ +   Y  +++   K      A  + +KM E  I   +V  ++++    K G+
Sbjct: 201 MVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGS 260

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            D A   F  +   G + D   Y+S+I    N G+   G  ++  MI   I      + A
Sbjct: 261 FDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSA 320

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+  F + G +  A ++ N M      P   +   L++ + +     +A   FD M+  G
Sbjct: 321 LIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKG 380

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            +PD    + +I +Y K   +D  + L  E+   G  P   TY  LV    +   +N A+
Sbjct: 381 CEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAK 440

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
           +L  ++   G  P       L D     G   KAL+    ++  +  +G   +  II+G+
Sbjct: 441 ELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGM 500

Query: 548 LAGGFLQDAQRVHGLMEAQG 567
                + DA  +   +  +G
Sbjct: 501 CNASKVDDAWSLFCSLSDKG 520



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 125/277 (45%), Gaps = 2/277 (0%)

Query: 218 LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
            QP  + +  +L+RL +  N+ L   +    + E + + +V  YS +ID+  K+   +DA
Sbjct: 206 FQPDEVTYGPVLNRLCKSGNSALALDLFR-KMEERNIKASVVQYSIVIDSLCKDGSFDDA 264

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
             +  +M   GI  D+VT + L+      G  D   +    +      PD   ++++I  
Sbjct: 265 LSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDV 324

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           +V  G+      L + MIT GI      Y +L+  F +   +  A Q+ ++M  +  +P 
Sbjct: 325 FVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPD 384

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           + + ++L+ +Y +A   D     F  +   G  P+     +++  + +   L+ A  L  
Sbjct: 385 IVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQ 444

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
           E+   G  P   TY +L+D L     +N+A ++  K+
Sbjct: 445 EMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKM 481



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/265 (21%), Positives = 124/265 (46%), Gaps = 10/265 (3%)

Query: 218 LQPSRIDWINLLDRLREQNT-----QLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC 272
           + P  I + +L+D   ++N      Q++    +L++S+   + ++  YS LI+++ K   
Sbjct: 346 IAPDTITYNSLIDGFCKENCLHEANQMF----DLMVSKGC-EPDIVTYSILINSYCKAKR 400

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           ++D  R+ ++++  G++P+ +T   LV  + ++G L+ AKE F+ + S G  P    Y  
Sbjct: 401 VDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGI 460

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           ++    + G+    + + + M  S +     IY  ++        V  A  +   +  + 
Sbjct: 461 LLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKG 520

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
            +P + +  +++    + G   +A   F  M   G  PDD     +I A+   + L  ++
Sbjct: 521 VKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSV 580

Query: 453 NLLLELEKDGFEPGPATYTVLVDWL 477
            L+ E++  GF    +T  +++D L
Sbjct: 581 ELIEEMKVCGFSADSSTIKMVIDML 605



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 68/321 (21%), Positives = 131/321 (40%), Gaps = 4/321 (1%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           ++ +   +S L++    E  + +A  ++ +M E    PD+VT + L++     G +  A 
Sbjct: 136 YEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEAL 195

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
              + +  +GFQPD+  Y  ++     +G   L + L   M    I+ S   Y  ++ S 
Sbjct: 196 VLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSL 255

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + G    A  + N M ++  +  + + + L+      G  D        MI     PD 
Sbjct: 256 CKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDV 315

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
              +++I  + K+  L +A  L  E+   G  P   TY  L+D   +   ++EA Q+   
Sbjct: 316 VTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDL 375

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAG 550
           +   G  P       L + Y +A      ++   F E   + + P+   +  ++ G    
Sbjct: 376 MVSKGCEPDIVTYSILINSYCKAKRVDDGMRL--FREISSKGLIPNTITYNTLVLGFCQS 433

Query: 551 GFLQDAQRVHGLMEAQGFAAS 571
           G L  A+ +   M ++G   S
Sbjct: 434 GKLNAAKELFQEMVSRGVPPS 454



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/306 (19%), Positives = 126/306 (41%)

Query: 263 LIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG 322
           +I+ + ++  L  A  +L +  + G  PD +T + LV+ +   G +  A    + +    
Sbjct: 111 MINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMK 170

Query: 323 FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAG 382
            +PD    +++I      G+    + L+D M+  G +  E  Y  +L    + G+   A 
Sbjct: 171 QRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALAL 230

Query: 383 QITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAY 442
            +   M     + ++   ++++++  + G  D A S F+ M   G K D    +S+I   
Sbjct: 231 DLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGL 290

Query: 443 GKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPF 502
                 D    +L E+      P   T++ L+D   +   + EA++L  ++   G AP  
Sbjct: 291 CNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDT 350

Query: 503 KIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGL 562
               SL D + +     +A Q    + +K  +     +  +IN       + D  R+   
Sbjct: 351 ITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFRE 410

Query: 563 MEAQGF 568
           + ++G 
Sbjct: 411 ISSKGL 416


>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
 gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
          Length = 725

 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 88/371 (23%), Positives = 168/371 (45%), Gaps = 14/371 (3%)

Query: 219 QPSRIDWINLLDRL---REQNTQL-YFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           +P+ I + N++  L   R+ ++ L  FK  E      S   +V  YS ++D+  K   ++
Sbjct: 181 RPNAITYNNIMHGLCSGRKLDSALQLFKEME---ESGSCPPDVFTYSTIVDSLVKSGKVD 237

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           DA R+++ M   G  P++VT + L+H   KAG LD A    + +   G  P+   YN++I
Sbjct: 238 DACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTII 297

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
             +   G+      L++ M+  G + +   Y  LL +F +CG    A  +  +M  + + 
Sbjct: 298 DGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYV 357

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P L +   L++ + +  + ++A      MI+ G  P+     ++IA   K   + + + L
Sbjct: 358 PNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLL 417

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
           L ++  +   P   T+  ++D + +   ++ A +L   I E G  P      SL     +
Sbjct: 418 LEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCK 477

Query: 515 AGIEKKALQALGFLE--AKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAA 570
           +   ++  QA   L    +K+   PD   +  +I+GL     +  A ++   M + G A 
Sbjct: 478 S---RRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAP 534

Query: 571 SERLKVALISS 581
            +     +ISS
Sbjct: 535 DDVTYSIVISS 545



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 139/304 (45%), Gaps = 1/304 (0%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           Q NV  Y+ L+DA  K    EDA  +++ M E G VP++ T   L+ M+ K   ++RA +
Sbjct: 322 QPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQ 381

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
              S+   G  P+   YN++I     A +   G+ L++ M+++        +  ++ +  
Sbjct: 382 LLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMC 441

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR-LGHKPDD 432
           +   V  A ++ N+++     P L +   LV    ++   DQA      M R  G  PD 
Sbjct: 442 KTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDI 501

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               ++I    K   +D+A  L L++  DG  P   TY++++  L + + ++EA  +L  
Sbjct: 502 ITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLEL 561

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
           + + G  P      +L D + + G   KAL+ L  L +K        F   I+ L   G 
Sbjct: 562 MLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGR 621

Query: 553 LQDA 556
           L+ A
Sbjct: 622 LRQA 625



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 137/311 (44%), Gaps = 39/311 (12%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +I+  +K + L+DA R+L++M +NG  P++ +   ++H + KA  ++ A    E + 
Sbjct: 47  YNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMV 106

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  PD   Y ++I       Q      ++D MI  G + +   Y  L+  F + GD+ 
Sbjct: 107 MRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLD 166

Query: 380 GAGQIT----------------NIMR-----------IEEFQ---------PTLESCTLL 403
           GA ++                 NIM            ++ F+         P + + + +
Sbjct: 167 GAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTI 226

Query: 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGF 463
           V++  ++G  D A    + M+  G  P+    +S++    K   LD+A  LL  + + G 
Sbjct: 227 VDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGC 286

Query: 464 EPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
            P   TY  ++D   +L  I+EA  LL ++ + G  P       L D + + G   KA  
Sbjct: 287 SPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCG---KAED 343

Query: 524 ALGFLEAKKEQ 534
           A+G +E   E+
Sbjct: 344 AIGLVEVMVEK 354



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 133/284 (46%), Gaps = 3/284 (1%)

Query: 219 QPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           QP+ + +  LLD   +    +    + E V+ E+ +  N+  Y+ L+D   K++ +E A 
Sbjct: 322 QPNVVTYTVLLDAFCKCGKAEDAIGLVE-VMVEKGYVPNLFTYNSLLDMFCKKDEVERAC 380

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
           ++L  M + G VP++V+   ++    KA  +       E + S+   PD   +N++I A 
Sbjct: 381 QLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAM 440

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIM-RIEEFQPT 396
               +  +   L +++  SG   +   Y +L+    +      A  +   M R +   P 
Sbjct: 441 CKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPD 500

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           + +   +++   ++   D+A   F  M+  G  PDD   + +I++  K   +D+A N+L 
Sbjct: 501 IITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLE 560

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
            + K+GF+PG  TY  L+D   +   +++A ++L  +   G  P
Sbjct: 561 LMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYP 604



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 120/260 (46%), Gaps = 4/260 (1%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMN-ENGIVPDIVTSTVLVHMYSKA 305
           ++ E     N+  Y+ L+    K    + AE +L++M  + G  PDI+T   ++    K+
Sbjct: 455 LIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKS 514

Query: 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
             +DRA + F  + S G  PD   Y+ +I +           +++++M+ +G +     Y
Sbjct: 515 KRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITY 574

Query: 366 LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
             L+  F + G++  A +I  ++  +   P + + ++ ++   + G   QA    + M+R
Sbjct: 575 GTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLR 634

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
            G  PD     +++  +   +  + A++L   + + G EP  ATYT LV   G L     
Sbjct: 635 AGLVPDTVTYNTLLKGFCDASRTEDAVDLFEVMRQCGCEPDNATYTTLV---GHLVDKKS 691

Query: 486 AEQLLGKISELGEAPPFKIQ 505
            + LL ++S+      FK+ 
Sbjct: 692 YKDLLAEVSKSMVDTGFKLN 711



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 109/265 (41%), Gaps = 6/265 (2%)

Query: 242 KVAELVLSEESFQTN-----VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTST 296
           KV E VL  E   +N     +  ++ +IDA  K   ++ A  +   + E+G  P++VT  
Sbjct: 410 KVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYN 469

Query: 297 VLVHMYSKAGNLDRAKEAF-ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMIT 355
            LVH   K+   D+A+    E  R  G  PD   YN++I     + +      L   M++
Sbjct: 470 SLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLS 529

Query: 356 SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ 415
            G+   +  Y  ++ S  +   +  A  +  +M    F P   +   L++ + + G+ D+
Sbjct: 530 DGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDK 589

Query: 416 ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
           A      ++  G  PD    +  I    K+  L +A  LL  + + G  P   TY  L+ 
Sbjct: 590 ALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLK 649

Query: 476 WLGRLQLINEAEQLLGKISELGEAP 500
                    +A  L   + + G  P
Sbjct: 650 GFCDASRTEDAVDLFEVMRQCGCEP 674



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 61/288 (21%), Positives = 118/288 (40%), Gaps = 2/288 (0%)

Query: 283 MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
           MN  G+         ++     AG    A   F  + S    PD   YN+MI     + +
Sbjct: 1   MNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREM-SKTCPPDSVTYNTMINGLSKSDR 59

Query: 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402
               + L++ M+ +G   +   Y  +L  F +   V  A  +   M +    P + S T 
Sbjct: 60  LDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTT 119

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           ++    +    D+A    D MI+ G +P+     +++  + +   LD A+ L+ ++ + G
Sbjct: 120 VINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERG 179

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVS-LCDMYARAGIEKKA 521
           + P   TY  ++  L   + ++ A QL  ++ E G  PP     S + D   ++G    A
Sbjct: 180 YRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDA 239

Query: 522 LQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
            + +  + +K        +  +++GL   G L +A  +   M   G +
Sbjct: 240 CRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCS 287



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 103/232 (44%), Gaps = 11/232 (4%)

Query: 241 FKVAELVLSE----ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTST 296
           F  AE +L E    +    ++  Y+ +ID   K   ++ A ++  +M  +G+ PD VT +
Sbjct: 481 FDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYS 540

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           +++    K   +D A    E +  +GF P    Y ++I  +   G     + ++ ++++ 
Sbjct: 541 IVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSK 600

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
           G       +   +   ++ G +R AG++   M      P   +   L++ +  A   + A
Sbjct: 601 GSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASRTEDA 660

Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL--NLLLELEKDGFEPG 466
              F+ M + G +PD+    +++      +L+DK    +LL E+ K   + G
Sbjct: 661 VDLFEVMRQCGCEPDNATYTTLVG-----HLVDKKSYKDLLAEVSKSMVDTG 707


>gi|449499490|ref|XP_004160831.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 81/357 (22%), Positives = 149/357 (41%), Gaps = 55/357 (15%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F  +   YS++I      + +E+A  + K+M   G+VPD+ T T+L+  +SKAG + +A 
Sbjct: 485 FVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAH 544

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
              + +   G +P    Y ++I AY+ A +  +   L ++MI  G   +   Y AL+  +
Sbjct: 545 NWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGY 604

Query: 373 AQCGDVRGAGQITNIMR------------------------------------------- 389
            + G++  A QI   MR                                           
Sbjct: 605 CKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDA 664

Query: 390 --------IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441
                   ++  +P       L++ + +A   D+A+  F  M+  G+ P+    +S+I  
Sbjct: 665 RDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVERGYNPNVYTYSSLIDR 724

Query: 442 YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
             K   LD  L +L ++ ++   P    YT ++D L ++   +EA +L+  + E G  P 
Sbjct: 725 LFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPN 784

Query: 502 FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDA 556
                ++ D + +AG   K L+   F E   +   P+   +  +IN   A G L +A
Sbjct: 785 VVTYTAMIDGFGKAGKVDKCLEL--FREMGSKGCAPNFVTYTVLINHCCATGHLDEA 839



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 65/288 (22%), Positives = 133/288 (46%), Gaps = 6/288 (2%)

Query: 236 NTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTS 295
           +  +YFK+   V      + NV  Y  L+D   K + ++DA  +L+ M  +G  P+ +  
Sbjct: 628 DVDMYFKIKNNVAE----KPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVY 683

Query: 296 TVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMIT 355
             L+  + KA  LD A+E F  +   G+ P+   Y+S+I       +  L + ++  M+ 
Sbjct: 684 DALIDGFCKAAKLDEAQEVFHKMVERGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLE 743

Query: 356 SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ 415
           +    +  IY  ++   ++      A ++  +M  +  +P + + T +++ +G+AG  D+
Sbjct: 744 NSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDK 803

Query: 416 ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
               F  M   G  P+      +I        LD+A  LL E+++  +    ++Y  +++
Sbjct: 804 CLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIE 863

Query: 476 WLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
              R  +++    LL ++ + G AP   +   L D + +AG  + AL+
Sbjct: 864 GYKREFILSLG--LLEEVEKNGSAPTILLYKVLIDNFVKAGRLEVALE 909



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 75/342 (21%), Positives = 132/342 (38%), Gaps = 41/342 (11%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++ +E F  N   Y+K+I    + +  E+A   L +M     +P++ T  +L+       
Sbjct: 298 LIEKEDFVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKK 357

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMM------------- 353
            L R K     + + G  P   ++NS++ AY  +        L+  M             
Sbjct: 358 QLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYN 417

Query: 354 -----ITSG--------IERSEEIYLALLR-----------SFAQC----GDVRGAGQIT 385
                I SG         E +E+ Y  +L            SFA+C    G    A ++ 
Sbjct: 418 ILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVI 477

Query: 386 NIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKK 445
           + M    F P   + + ++     A   + A   F  M   G  PD      +I  + K 
Sbjct: 478 HEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKA 537

Query: 446 NLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQ 505
            ++ +A N L E+ +DG EP   TYT L+    + + ++ A +L   +   G  P     
Sbjct: 538 GIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITY 597

Query: 506 VSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
            +L D Y ++G  +KA Q    +    +    D + +I N +
Sbjct: 598 TALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNV 639



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 104/260 (40%), Gaps = 16/260 (6%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
            E AE+   +M   G V + V            G  ++A +    +  +GF PD   Y+ 
Sbjct: 435 FELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSE 494

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I    NA + +    L   M  +G+      Y  L+  F++ G ++ A    + M  + 
Sbjct: 495 VIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDG 554

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
            +PT+ + T L+ AY +A     A   F+ MI  G  P+     ++I  Y K   ++KA 
Sbjct: 555 CEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKAC 614

Query: 453 NLLLELEKDG--------F--------EPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
            +   +  D         F        +P   TY  LVD L +   + +A  LL  +   
Sbjct: 615 QIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVD 674

Query: 497 GEAPPFKIQVSLCDMYARAG 516
           G  P   +  +L D + +A 
Sbjct: 675 GCEPNTIVYDALIDGFCKAA 694



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 64/303 (21%), Positives = 126/303 (41%), Gaps = 16/303 (5%)

Query: 288 IVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGM 347
            VP+ +    ++    +A   + A +    +RS    P+ + Y  ++   +N  Q     
Sbjct: 304 FVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCK 363

Query: 348 SLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAY 407
            ++ MMI  G   S  I+ +L+ ++ +  D   A ++   M   E +P      +L+ + 
Sbjct: 364 RILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSI 423

Query: 408 GQAGDP------DQARSNFDYMIRLG---HKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
              G+       + A   ++ M+  G   +K +    A  +  +GK    +KA  ++ E+
Sbjct: 424 CSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGK---FEKAYKVIHEM 480

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
             +GF P  +TY+ ++ +L     +  A  L  ++   G  P       L D +++AGI 
Sbjct: 481 MGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGII 540

Query: 519 KKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKV 576
           K+A   L   E  ++   P    +  +I+  L    +  A  +  LM A+G   +     
Sbjct: 541 KQAHNWLD--EMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYT 598

Query: 577 ALI 579
           ALI
Sbjct: 599 ALI 601


>gi|449446442|ref|XP_004140980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 81/357 (22%), Positives = 149/357 (41%), Gaps = 55/357 (15%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F  +   YS++I      + +E+A  + K+M   G+VPD+ T T+L+  +SKAG + +A 
Sbjct: 485 FVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAH 544

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
              + +   G +P    Y ++I AY+ A +  +   L ++MI  G   +   Y AL+  +
Sbjct: 545 NWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGY 604

Query: 373 AQCGDVRGAGQITNIMR------------------------------------------- 389
            + G++  A QI   MR                                           
Sbjct: 605 CKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDA 664

Query: 390 --------IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441
                   ++  +P       L++ + +A   D+A+  F  M+  G+ P+    +S+I  
Sbjct: 665 RDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVEHGYNPNVYTYSSLIDR 724

Query: 442 YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
             K   LD  L +L ++ ++   P    YT ++D L ++   +EA +L+  + E G  P 
Sbjct: 725 LFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPN 784

Query: 502 FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDA 556
                ++ D + +AG   K L+   F E   +   P+   +  +IN   A G L +A
Sbjct: 785 VVTYTAMIDGFGKAGKVDKCLEL--FREMGSKGCAPNFVTYTVLINHCCATGHLDEA 839



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 134/288 (46%), Gaps = 6/288 (2%)

Query: 236 NTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTS 295
           +  +YFK+   V      + NV  Y  L+D   K + ++DA  +L+ M  +G  P+ +  
Sbjct: 628 DVDMYFKIKNNVAE----KPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVY 683

Query: 296 TVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMIT 355
             L+  + KA  LD A+E F  +  HG+ P+   Y+S+I       +  L + ++  M+ 
Sbjct: 684 DALIDGFCKAAKLDEAQEVFHKMVEHGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLE 743

Query: 356 SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ 415
           +    +  IY  ++   ++      A ++  +M  +  +P + + T +++ +G+AG  D+
Sbjct: 744 NSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDK 803

Query: 416 ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
               F  M   G  P+      +I        LD+A  LL E+++  +    ++Y  +++
Sbjct: 804 CLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIE 863

Query: 476 WLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
              R  +++    LL ++ + G AP   +   L D + +AG  + AL+
Sbjct: 864 GYKREFILSLG--LLEEVEKNGSAPIILLYKVLIDNFVKAGRLEVALE 909



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 75/342 (21%), Positives = 132/342 (38%), Gaps = 41/342 (11%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++ +E F  N   Y+K+I    + +  E+A   L +M     +P++ T  +L+       
Sbjct: 298 LIEKEDFVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKK 357

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMM------------- 353
            L R K     + + G  P   ++NS++ AY  +        L+  M             
Sbjct: 358 QLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYN 417

Query: 354 -----ITSG--------IERSEEIYLALLR-----------SFAQC----GDVRGAGQIT 385
                I SG         E +E+ Y  +L            SFA+C    G    A ++ 
Sbjct: 418 ILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVI 477

Query: 386 NIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKK 445
           + M    F P   + + ++     A   + A   F  M   G  PD      +I  + K 
Sbjct: 478 HEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKA 537

Query: 446 NLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQ 505
            ++ +A N L E+ +DG EP   TYT L+    + + ++ A +L   +   G  P     
Sbjct: 538 GIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITY 597

Query: 506 VSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
            +L D Y ++G  +KA Q    +    +    D + +I N +
Sbjct: 598 TALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNV 639



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 104/260 (40%), Gaps = 16/260 (6%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
            E AE+   +M   G V + V            G  ++A +    +  +GF PD   Y+ 
Sbjct: 435 FELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSE 494

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I    NA + +    L   M  +G+      Y  L+  F++ G ++ A    + M  + 
Sbjct: 495 VIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDG 554

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
            +PT+ + T L+ AY +A     A   F+ MI  G  P+     ++I  Y K   ++KA 
Sbjct: 555 CEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKAC 614

Query: 453 NLLLELEKDG--------F--------EPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
            +   +  D         F        +P   TY  LVD L +   + +A  LL  +   
Sbjct: 615 QIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVD 674

Query: 497 GEAPPFKIQVSLCDMYARAG 516
           G  P   +  +L D + +A 
Sbjct: 675 GCEPNTIVYDALIDGFCKAA 694



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 64/303 (21%), Positives = 126/303 (41%), Gaps = 16/303 (5%)

Query: 288 IVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGM 347
            VP+ +    ++    +A   + A +    +RS    P+ + Y  ++   +N  Q     
Sbjct: 304 FVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCK 363

Query: 348 SLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAY 407
            ++ MMI  G   S  I+ +L+ ++ +  D   A ++   M   E +P      +L+ + 
Sbjct: 364 RILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSI 423

Query: 408 GQAGDP------DQARSNFDYMIRLG---HKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
              G+       + A   ++ M+  G   +K +    A  +  +GK    +KA  ++ E+
Sbjct: 424 CSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGK---FEKAYKVIHEM 480

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
             +GF P  +TY+ ++ +L     +  A  L  ++   G  P       L D +++AGI 
Sbjct: 481 MGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGII 540

Query: 519 KKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKV 576
           K+A   L   E  ++   P    +  +I+  L    +  A  +  LM A+G   +     
Sbjct: 541 KQAHNWLD--EMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYT 598

Query: 577 ALI 579
           ALI
Sbjct: 599 ALI 601


>gi|357485461|ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514353|gb|AES95976.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 894

 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 73/333 (21%), Positives = 145/333 (43%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           +L+   F  +V  Y++L    ++   +++   + K M  +G+ P++++   +V+ + K G
Sbjct: 145 LLTHHEFSLSVTSYNRLFMVLSRFGLIDELNCLFKDMLNDGVEPNLISFNTMVNAHCKIG 204

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           N+  AK  F  L   GF  D   Y S+I+ Y    +      + ++M   G  R+E  Y 
Sbjct: 205 NVVVAKAYFCGLMKFGFCCDSFTYTSLILGYCKIHELGDAYKVFEIMPQEGCLRNEVSYT 264

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+  F + G +  A ++   M+ +   P + + T+LV A+ + G   +A   F+ M+  
Sbjct: 265 NLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMVEN 324

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G +P+      +I  + K   +D+ + +L  + + G       +  L+D   +  ++ +A
Sbjct: 325 GIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDGYCKRGMMEDA 384

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
             +L  +      P  +    L   + R     +A+  L  +   K       +  +I+G
Sbjct: 385 ICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNTLIHG 444

Query: 547 LLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
           L     +  A R+H LM   GF   +R   A I
Sbjct: 445 LCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFI 477



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 73/327 (22%), Positives = 144/327 (44%), Gaps = 1/327 (0%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F  +   Y+ LI  + K + L DA ++ + M + G + + V+ T L+H + + G +D A 
Sbjct: 221 FCCDSFTYTSLILGYCKIHELGDAYKVFEIMPQEGCLRNEVSYTNLIHGFCEVGKIDEAL 280

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           E F  ++  G  PD   Y  ++ A+   G+    +   + M+ +GIE +   Y  L+  F
Sbjct: 281 ELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPNVYTYTVLIDYF 340

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + G +    ++ + M  +    ++     L++ Y + G  + A    D M      P+ 
Sbjct: 341 CKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDGYCKRGMMEDAICVLDSMKLNKVCPNS 400

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
           R    +I  + +K  +D+A+ LL ++ ++   P   TY  L+  L + ++++ A +L   
Sbjct: 401 RTYNELICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNTLIHGLCKARVVDSAWRLHHL 460

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
           + + G  P  +   +  D   + G  ++A Q    L+ K  +     +  +I+G      
Sbjct: 461 MIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEKHAEANEFLYTALIDGYCKAEK 520

Query: 553 LQDAQRVHGLMEAQG-FAASERLKVAL 578
             DA  +   M  +G F  S    V L
Sbjct: 521 FSDAHLLFKRMLFEGCFPNSITFNVLL 547



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 150/326 (46%), Gaps = 7/326 (2%)

Query: 241 FKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
           +KV E ++ +E    N   Y+ LI    +   +++A  +  +M E+G  PD+ T TVLV 
Sbjct: 245 YKVFE-IMPQEGCLRNEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLVA 303

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
            + + G    A + FE +  +G +P+   Y  +I  +   G+   GM ++  M+  G+  
Sbjct: 304 AFCEVGKETEALKFFEEMVENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVS 363

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
           S   + AL+  + + G +  A  + + M++ +  P   +   L+  + +    D+A +  
Sbjct: 364 SVVPFNALIDGYCKRGMMEDAICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMALL 423

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
           + M      P+     ++I    K  ++D A  L   + KDGF P   T+   +D L ++
Sbjct: 424 NKMYENKLSPNLVTYNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCLCKM 483

Query: 481 QLINEAEQLLGKISE-LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD 539
             + +A Q+   + E   EA  F +  +L D Y +A  EK +   L F     E   P+ 
Sbjct: 484 GKVEQAHQVFESLKEKHAEANEF-LYTALIDGYCKA--EKFSDAHLLFKRMLFEGCFPNS 540

Query: 540 --FERIINGLLAGGFLQDAQRVHGLM 563
             F  +++GL   G ++DA  +  +M
Sbjct: 541 ITFNVLLDGLRKEGKVEDAMSLVDVM 566



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 87/373 (23%), Positives = 156/373 (41%), Gaps = 52/373 (13%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E     N+  Y+ LI    K   ++ A R+   M ++G VPD  T    +    K G 
Sbjct: 426 MYENKLSPNLVTYNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCLCKMGK 485

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +++A + FESL+    + ++ +Y ++I  Y  A +      L   M+  G   +   +  
Sbjct: 486 VEQAHQVFESLKEKHAEANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEGCFPNSITFNV 545

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           LL    + G V  A  + ++M   + +PT+ + T+L+E   +  D D+A    D MI  G
Sbjct: 546 LLDGLRKEGKVEDAMSLVDVMGKFDAKPTVHTYTILIEEILRESDFDRANMFLDQMISSG 605

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            +P+     + I AY ++  L +A  ++++++++G       Y VLV+  G +  ++ A 
Sbjct: 606 CQPNVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEGILLDSFIYDVLVNAYGCIGQLDSAF 665

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--------- 538
            +L ++ + G  P  +    L             L+ L F +  KE MG D         
Sbjct: 666 GVLIRMFDTGCEPSRQTYSIL-------------LKHLIFEKYNKEGMGLDLNSTNISVD 712

Query: 539 --------DFE----------------------RIINGLLAGGFLQDAQRVHGLMEAQGF 568
                   DFE                      ++I GL     L  A R+   M+  G 
Sbjct: 713 NANIWKIADFEIITMLFEKMVEQGCVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKESGI 772

Query: 569 AASERLKVALISS 581
           + SE +  +L+SS
Sbjct: 773 SPSENIHNSLLSS 785



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 58/267 (21%), Positives = 111/267 (41%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E+   ++V  ++ LID + K   +EDA  +L  M  N + P+  T   L+  + +  ++D
Sbjct: 358 EKGLVSSVVPFNALIDGYCKRGMMEDAICVLDSMKLNKVCPNSRTYNELICGFCRKKSMD 417

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
           RA      +  +   P+   YN++I     A        L  +MI  G    +  + A +
Sbjct: 418 RAMALLNKMYENKLSPNLVTYNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFI 477

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               + G V  A Q+   ++ +  +      T L++ Y +A     A   F  M+  G  
Sbjct: 478 DCLCKMGKVEQAHQVFESLKEKHAEANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEGCF 537

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           P+      ++    K+  ++ A++L+  + K   +P   TYT+L++ + R    + A   
Sbjct: 538 PNSITFNVLLDGLRKEGKVEDAMSLVDVMGKFDAKPTVHTYTILIEEILRESDFDRANMF 597

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAG 516
           L ++   G  P      +    Y R G
Sbjct: 598 LDQMISSGCQPNVVTYTAFIKAYCRQG 624



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 151/354 (42%), Gaps = 32/354 (9%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L E+  + N   Y+ LID + K     DA  + K+M   G  P+ +T  VL+    K G 
Sbjct: 496 LKEKHAEANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDGLRKEGK 555

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           ++ A    + +     +P    Y  +I   +           +D MI+SG + +   Y A
Sbjct: 556 VEDAMSLVDVMGKFDAKPTVHTYTILIEEILRESDFDRANMFLDQMISSGCQPNVVTYTA 615

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCT--LLVEAYGQAGDPDQARSNFDYMIR 425
            ++++ + G +  A ++  +++I+E    L+S    +LV AYG  G  D A      M  
Sbjct: 616 FIKAYCRQGRLLEAEEM--VVKIKEEGILLDSFIYDVLVNAYGCIGQLDSAFGVLIRMFD 673

Query: 426 LGHKPDDRCTASMIA------AYGKKNL----------LDKA----------LNLLLE-L 458
            G +P  R T S++        Y K+ +          +D A          + +L E +
Sbjct: 674 TGCEP-SRQTYSILLKHLIFEKYNKEGMGLDLNSTNISVDNANIWKIADFEIITMLFEKM 732

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
            + G  P   TY+ L+  L +++ ++ A +L   + E G +P   I  SL     + G+ 
Sbjct: 733 VEQGCVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKESGISPSENIHNSLLSSCCKLGMH 792

Query: 519 KKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572
           ++AL+ L  +         + ++ ++ GL   G  + A+ +   + + G+   E
Sbjct: 793 EEALRLLDSMMEYNHLAHLESYKLLVCGLFEQGNQEKAEEIFRSLLSCGYNYDE 846



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/253 (20%), Positives = 108/253 (42%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E   + NV  Y+ LID   K   +++   +L  M E G+V  +V    L+  Y K G 
Sbjct: 321 MVENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDGYCKRGM 380

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           ++ A    +S++ +   P+ + YN +I  +         M+L++ M  + +  +   Y  
Sbjct: 381 MEDAICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNT 440

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    +   V  A ++ ++M  + F P   +    ++   + G  +QA   F+ +    
Sbjct: 441 LIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEKH 500

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            + ++    ++I  Y K      A  L   +  +G  P   T+ VL+D L +   + +A 
Sbjct: 501 AEANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDGLRKEGKVEDAM 560

Query: 488 QLLGKISELGEAP 500
            L+  + +    P
Sbjct: 561 SLVDVMGKFDAKP 573



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 79/357 (22%), Positives = 150/357 (42%), Gaps = 27/357 (7%)

Query: 220 PSRIDWINLLDRLREQNTQLYFKVAEL-----VLSEESFQTNVRDYSKLIDAHAKENCLE 274
           P+ I +  LLD LR++      KV +      V+ +   +  V  Y+ LI+   +E+  +
Sbjct: 538 PNSITFNVLLDGLRKEG-----KVEDAMSLVDVMGKFDAKPTVHTYTILIEEILRESDFD 592

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
            A   L +M  +G  P++VT T  +  Y + G L  A+E    ++  G   D  +Y+ ++
Sbjct: 593 RANMFLDQMISSGCQPNVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEGILLDSFIYDVLV 652

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA-QCGDVRGAGQITNIMRIEEF 393
            AY   GQ      ++  M  +G E S + Y  LL+    +  +  G G   N   I   
Sbjct: 653 NAYGCIGQLDSAFGVLIRMFDTGCEPSRQTYSILLKHLIFEKYNKEGMGLDLNSTNISVD 712

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
              +           +  D +     F+ M+  G  P+    + +I    K   L  A  
Sbjct: 713 NANI----------WKIADFEIITMLFEKMVEQGCVPNVNTYSKLIKGLCKVEHLSLAFR 762

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE---LGEAPPFKIQVSLCD 510
           L   +++ G  P    +  L+    +L +  EA +LL  + E   L     +K+ V  C 
Sbjct: 763 LFNHMKESGISPSENIHNSLLSSCCKLGMHEEALRLLDSMMEYNHLAHLESYKLLV--CG 820

Query: 511 MYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
           ++ + G ++KA +    L +         ++ +++GL+  G++ +  ++  +ME  G
Sbjct: 821 LFEQ-GNQEKAEEIFRSLLSCGYNYDEVVWKVLLDGLVRKGYVDECSQLRDIMEKTG 876



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 64/281 (22%), Positives = 113/281 (40%), Gaps = 26/281 (9%)

Query: 219 QPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAER 278
           QP+ + +   +     Q   L  +   + + EE    +   Y  L++A+     L+ A  
Sbjct: 607 QPNVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEGILLDSFIYDVLVNAYGCIGQLDSAFG 666

Query: 279 ILKKMNENGIVPDIVTSTVLV-HM----YSKAG----------NLDRAK----------- 312
           +L +M + G  P   T ++L+ H+    Y+K G          ++D A            
Sbjct: 667 VLIRMFDTGCEPSRQTYSILLKHLIFEKYNKEGMGLDLNSTNISVDNANIWKIADFEIIT 726

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
             FE +   G  P+   Y+ +I          L   L + M  SGI  SE I+ +LL S 
Sbjct: 727 MLFEKMVEQGCVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKESGISPSENIHNSLLSSC 786

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + G    A ++ + M        LES  LLV    + G+ ++A   F  ++  G+  D+
Sbjct: 787 CKLGMHEEALRLLDSMMEYNHLAHLESYKLLVCGLFEQGNQEKAEEIFRSLLSCGYNYDE 846

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVL 473
                ++    +K  +D+   L   +EK G      T+T+L
Sbjct: 847 VVWKVLLDGLVRKGYVDECSQLRDIMEKTGCRLHSDTHTML 887


>gi|297746072|emb|CBI16128.3| unnamed protein product [Vitis vinifera]
          Length = 563

 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 124/268 (46%), Gaps = 4/268 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E     NV  Y+ LI    +E  + +AER++ +M  +G+ P++++   L+  Y   GN
Sbjct: 295 MRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGN 354

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           LD+A   F  ++S G  P    YN +I  +  A        +V  M   G+  S+  Y  
Sbjct: 355 LDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTI 414

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+ +  +  ++  A QI + M        +    +L+      GD  +A   F  +  + 
Sbjct: 415 LMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMH 474

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            KP+D    +MI  Y K+    +AL LL E+ ++G  P  A+Y   +  L + +   EAE
Sbjct: 475 LKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIQILCKDEKWTEAE 534

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARA 515
            LL  + ELG  P     +S+ +M ++A
Sbjct: 535 VLLKDMIELGLKP----SISIWNMISKA 558



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 129/303 (42%), Gaps = 4/303 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E     NV  Y+ LID   K   +E  +++  KM E  +V +  T TVL++ + K G 
Sbjct: 190 MEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGL 249

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
                E +E ++  G  P+   YNSMI    N G+      L D M   G+  +   Y  
Sbjct: 250 KKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNT 309

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    Q   V  A ++   M+ +   P L S   L++ Y   G+ D+A S F+ M   G
Sbjct: 310 LIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSG 369

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P       +IA + +        +++ E+E  G  P   TYT+L+D L R   I +A 
Sbjct: 370 QSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAF 429

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
           Q+   + + G      I   L       G  K+A +   F    +  + P+D   I N +
Sbjct: 430 QIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKL--FKSLDEMHLKPNDV--IYNTM 485

Query: 548 LAG 550
           + G
Sbjct: 486 IYG 488



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 131/328 (39%), Gaps = 13/328 (3%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           +SF T+V  +  +I+AH +    E A     +M   G+VP   T   L+ +  K+   ++
Sbjct: 89  DSFPTHVLIHEAIINAHVRSQLPEQALFYFNQMIGRGLVPGSNTFNNLLILLIKSNFFEK 148

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A   F   + +  + D   +  MI      G    G  ++  M   G+  +  +Y  L+ 
Sbjct: 149 AWRVFNETKGN-VKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLID 207

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
              + GD+    Q+   M   +      + T+L+  + + G        ++ M   G  P
Sbjct: 208 GCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVP 267

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           +     SMI        L+ A  L  E+ + G      TY  L+  L + + + EAE+L+
Sbjct: 268 NVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLM 327

Query: 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAG 550
            ++   G +P      +L D Y   G   KA     F + K     P       N L+AG
Sbjct: 328 CRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSL--FNQMKSSGQSPS--LATYNILIAG 383

Query: 551 GFLQDAQRVHGL------MEAQGFAASE 572
               +A+   G+      MEA+G + S+
Sbjct: 384 --FSEAKNSAGVTDMVREMEARGLSPSK 409



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/320 (18%), Positives = 128/320 (40%), Gaps = 1/320 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++ L+    K N  E A R+  +   N +  D+ +  +++    + G LD+  E    + 
Sbjct: 133 FNNLLILLIKSNFFEKAWRVFNETKGN-VKLDVYSFGIMIKGCCEVGYLDKGFEVLGQME 191

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P+  VY ++I      G  + G  L   M    +  ++  Y  L+  F + G  +
Sbjct: 192 EMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKK 251

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
              ++   M++    P + +   ++      G  + A   FD M   G   +     ++I
Sbjct: 252 DGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLI 311

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
               ++  + +A  L+  +++DG  P   +Y  L+D    +  +++A  L  ++   G++
Sbjct: 312 GGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQS 371

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P       L   ++ A         +  +EA+        +  +++ L+    ++ A ++
Sbjct: 372 PSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQI 431

Query: 560 HGLMEAQGFAASERLKVALI 579
           +  ME  G  A   +   LI
Sbjct: 432 YSSMEKAGLVADIYIYGVLI 451


>gi|302769103|ref|XP_002967971.1| hypothetical protein SELMODRAFT_145138 [Selaginella moellendorffii]
 gi|300164709|gb|EFJ31318.1| hypothetical protein SELMODRAFT_145138 [Selaginella moellendorffii]
          Length = 1354

 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 135/307 (43%), Gaps = 11/307 (3%)

Query: 235 QNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVT 294
           QN ++ F+     L    F  N   YS L+ A+A+    E A R L  M   G+ P+   
Sbjct: 652 QNAEIVFRD----LQRHGFAGNTSAYSALLSAYAETGNFERATRALDNMVAAGLQPNAAC 707

Query: 295 STVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMI 354
           +  ++  + +AG      E ++ L   G  P+ + +  +  A+   G  +   S+   M 
Sbjct: 708 ANYVLEAFGRAGKAKELSEFYQRLPEMGITPNSRTFVVIFHAFSRNGNLEEARSMYRQMR 767

Query: 355 TSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPD 414
            +G   S +++ ALL  +++      A ++   ++    +  ++    ++  Y + G   
Sbjct: 768 EAGFSPSIQVFKALLALYSRETVEIDAEELVKDIKKAGLELDMDIYNHMISLYSKLGSYR 827

Query: 415 QARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
           +A   F  M  +G  PD     ++I  Y +  ++ +A  LL E+ K G  P  +TYT L+
Sbjct: 828 KAALVFKGMQEIGCSPDATTFNTLIMLYSRNQMVQEAQALLREMIKTGNAPNISTYTTLI 887

Query: 475 DWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ 534
              GRLQ   +AE +   I+E G  P       + ++Y +AG  +K       +E   EQ
Sbjct: 888 SAYGRLQAYEDAELVFKSIAETGCKPDATAYNVMINVYRKAGEHRK-------IEEVIEQ 940

Query: 535 MGPDDFE 541
           M  D FE
Sbjct: 941 MKADGFE 947



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 108/216 (50%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI A +  N L DA  I ++M   G  PDI T   ++ +Y +AG ++ A   F  ++
Sbjct: 188 YNTLISACSLNNRLSDAILIFEEMQRQGCDPDIWTYNAMISVYGRAGRVEAASSIFRIMQ 247

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             GF PD   YNS++ A+   G+ +    +  MM  +     E  Y  ++  + + G  R
Sbjct: 248 EQGFTPDAVTYNSVLHAFARDGRIEEVERIRGMMRDARCSSDEITYNTMIHMYGKAGMHR 307

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++   M+ E   P   + T+L++  G+AG  ++A + F+ M++   +P  +  ++MI
Sbjct: 308 KAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVRPTLQAFSAMI 367

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
            AY K ++   A +    + + G  P    Y+V++D
Sbjct: 368 CAYAKADMFSDAEHTYSCMLRAGVRPDLLAYSVMLD 403



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 119/277 (42%), Gaps = 10/277 (3%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQ-----TNVRDYSKLIDAHAKENC 272
           L+P  I +  L+      N     ++++ +L  E  Q      ++  Y+ +I  + +   
Sbjct: 181 LRPDTITYNTLISACSLNN-----RLSDAILIFEEMQRQGCDPDIWTYNAMISVYGRAGR 235

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           +E A  I + M E G  PD VT   ++H +++ G ++  +     +R      D+  YN+
Sbjct: 236 VEAASSIFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVERIRGMMRDARCSSDEITYNT 295

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           MI  Y  AG  +    L   M   G       +  L+ +  + G V  A  +   M   +
Sbjct: 296 MIHMYGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQ 355

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
            +PTL++ + ++ AY +A     A   +  M+R G +PD    + M+  + K  + +K +
Sbjct: 356 VRPTLQAFSAMICAYAKADMFSDAEHTYSCMLRAGVRPDLLAYSVMLDVFFKAEMPEKCI 415

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
            L   +   G +P  + Y ++V    +   + E E L
Sbjct: 416 ILYKAMVGSGLKPELSVYAIMVRVFYQKSSLAEIENL 452



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 77/358 (21%), Positives = 150/358 (41%), Gaps = 39/358 (10%)

Query: 194 ITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESF 253
           ++D I  L++ E     +  WKE L P+  D   ++ R+   + Q   ++ E +     +
Sbjct: 19  LSDAICRLDEHEFVRETVDGWKEQLAPT--DLCYVVKRVANTSWQRALELYECLNVARWY 76

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
             N R  + ++    + N    A+ +  +  E+ I   +     L+ +Y++ G+ +  ++
Sbjct: 77  APNPRMLAVMLSVLGRANQPGLAQELFDRA-ESSIGNCVQVYNSLMSVYARHGDWNSVQQ 135

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAG-QPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
               ++  G +PD   +N +I A    G Q  L  SL+  +  +G+      Y  L+ + 
Sbjct: 136 LLCRMQDRGCRPDLVTFNIVIKARTRGGMQEGLASSLLQDVYAAGLRPDTITYNTLISAC 195

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP-- 430
           +    +  A  I   M+ +   P + +   ++  YG+AG  + A S F  M   G  P  
Sbjct: 196 SLNNRLSDAILIFEEMQRQGCDPDIWTYNAMISVYGRAGRVEAASSIFRIMQEQGFTPDA 255

Query: 431 ---------------------------DDRCTA------SMIAAYGKKNLLDKALNLLLE 457
                                      D RC++      +MI  YGK  +  KA  L ++
Sbjct: 256 VTYNSVLHAFARDGRIEEVERIRGMMRDARCSSDEITYNTMIHMYGKAGMHRKAEELYVQ 315

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
           ++++G  P   T+TVL+D LG+   +NEA  +   + +    P  +   ++   YA+A
Sbjct: 316 MKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVRPTLQAFSAMICAYAKA 373



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/247 (22%), Positives = 104/247 (42%)

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A  +L+ +   G+ PD +T   L+   S    L  A   FE ++  G  PD   YN+MI 
Sbjct: 169 ASSLLQDVYAAGLRPDTITYNTLISACSLNNRLSDAILIFEEMQRQGCDPDIWTYNAMIS 228

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
            Y  AG+ +   S+  +M   G       Y ++L +FA+ G +    +I  +MR      
Sbjct: 229 VYGRAGRVEAASSIFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVERIRGMMRDARCSS 288

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
              +   ++  YG+AG   +A   +  M   G  PD      +I   GK   +++A  + 
Sbjct: 289 DEITYNTMIHMYGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMF 348

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
            ++ K    P    ++ ++    +  + ++AE     +   G  P       + D++ +A
Sbjct: 349 EDMLKSQVRPTLQAFSAMICAYAKADMFSDAEHTYSCMLRAGVRPDLLAYSVMLDVFFKA 408

Query: 516 GIEKKAL 522
            + +K +
Sbjct: 409 EMPEKCI 415



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 59/289 (20%), Positives = 120/289 (41%), Gaps = 44/289 (15%)

Query: 260  YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
            ++ LI  +++   +++A+ +L++M + G  P+I T T L+  Y +    + A+  F+S+ 
Sbjct: 848  FNTLIMLYSRNQMVQEAQALLREMIKTGNAPNISTYTTLISAYGRLQAYEDAELVFKSIA 907

Query: 320  SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
              G +PD   YN MI  Y  AG+                                    R
Sbjct: 908  ETGCKPDATAYNVMINVYRKAGEH-----------------------------------R 932

Query: 380  GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
               ++   M+ + F+P+L +  +L+++YG+ G   +A    + +  +G  PD     S+I
Sbjct: 933  KIEEVIEQMKADGFEPSLTTIHMLMDSYGKGGATGKAEEVLETLPEIGMSPDAIHYTSII 992

Query: 440  AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             ++        A+  L ++      P   T T  V      +  + A  LL  +SE G +
Sbjct: 993  NSHLNNKDYLSAVIWLRKMTDACVRPTHVTITCFVGAASVCERSSHALMLLKALSEAGFS 1052

Query: 500  PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLL 548
             P ++               K +Q +  +  + ++ GP+  + ++N L+
Sbjct: 1053 LPLRLMTE---------CTPKVVQDMQDIFDQLQESGPEACQGVVNVLM 1092



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/225 (21%), Positives = 100/225 (44%)

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           VLV  Y +AG  D A   F  + + G + D +V  + +M Y   G   +   L+   + +
Sbjct: 570 VLVASYDRAGMQDEALARFLDMTTEGLEMDAEVLQTAVMCYCRKGFAFVAHELLIDCLHA 629

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
              +   +++A++ S+ +    + A  +   ++   F     + + L+ AY + G+ ++A
Sbjct: 630 FEVKDSAMHVAIIASYGKLKLWQNAEIVFRDLQRHGFAGNTSAYSALLSAYAETGNFERA 689

Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476
               D M+  G +P+  C   ++ A+G+     +       L + G  P   T+ V+   
Sbjct: 690 TRALDNMVAAGLQPNAACANYVLEAFGRAGKAKELSEFYQRLPEMGITPNSRTFVVIFHA 749

Query: 477 LGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKA 521
             R   + EA  +  ++ E G +P  ++  +L  +Y+R  +E  A
Sbjct: 750 FSRNGNLEEARSMYRQMREAGFSPSIQVFKALLALYSRETVEIDA 794



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 65/332 (19%), Positives = 123/332 (37%), Gaps = 55/332 (16%)

Query: 289 VPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMS 348
           V D      ++  Y K      A+  F  L+ HGF  +   Y++++ AY   G  +    
Sbjct: 632 VKDSAMHVAIIASYGKLKLWQNAEIVFRDLQRHGFAGNTSAYSALLSAYAETGNFERATR 691

Query: 349 LVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYG 408
            +D M+ +G++ +      +L +F + G  +   +    +      P   +  ++  A+ 
Sbjct: 692 ALDNMVAAGLQPNAACANYVLEAFGRAGKAKELSEFYQRLPEMGITPNSRTFVVIFHAFS 751

Query: 409 QAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE---- 464
           + G+ ++ARS +  M   G  P  +   +++A Y ++ +   A  L+ +++K G E    
Sbjct: 752 RNGNLEEARSMYRQMREAGFSPSIQVFKALLALYSRETVEIDAEELVKDIKKAGLELDMD 811

Query: 465 -------------------------------PGPATYTVLVDWLGRLQLINEAEQLLGKI 493
                                          P   T+  L+    R Q++ EA+ LL ++
Sbjct: 812 IYNHMISLYSKLGSYRKAALVFKGMQEIGCSPDATTFNTLIMLYSRNQMVQEAQALLREM 871

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--------------- 538
            + G AP      +L   Y R    + A   L F    +    PD               
Sbjct: 872 IKTGNAPNISTYTTLISAYGRLQAYEDA--ELVFKSIAETGCKPDATAYNVMINVYRKAG 929

Query: 539 ---DFERIINGLLAGGFLQDAQRVHGLMEAQG 567
                E +I  + A GF      +H LM++ G
Sbjct: 930 EHRKIEEVIEQMKADGFEPSLTTIHMLMDSYG 961



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 11/114 (9%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  Y+ LI A+ +    EDAE + K + E G  PD     V++++Y KAG   + +E  
Sbjct: 879 NISTYTTLISAYGRLQAYEDAELVFKSIAETGCKPDATAYNVMINVYRKAGEHRKIEEVI 938

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQ-----------PKLGMSLVDMMITSGI 358
           E +++ GF+P     + ++ +Y   G            P++GMS   +  TS I
Sbjct: 939 EQMKADGFEPSLTTIHMLMDSYGKGGATGKAEEVLETLPEIGMSPDAIHYTSII 992



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 51/99 (51%), Gaps = 3/99 (3%)

Query: 244 AELV---LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
           AELV   ++E   + +   Y+ +I+ + K       E ++++M  +G  P + T  +L+ 
Sbjct: 899 AELVFKSIAETGCKPDATAYNVMINVYRKAGEHRKIEEVIEQMKADGFEPSLTTIHMLMD 958

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339
            Y K G   +A+E  E+L   G  PD   Y S+I +++N
Sbjct: 959 SYGKGGATGKAEEVLETLPEIGMSPDAIHYTSIINSHLN 997


>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
 gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 128/264 (48%), Gaps = 2/264 (0%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           + P+ + +  L+D L ++      ++    ++E+  + ++  Y+ L+D +  +  + +A+
Sbjct: 299 VMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAK 358

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
           ++ + M   G  P   +  +L++ Y K+  +D AK     +      PD   Y++++   
Sbjct: 359 KVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGL 418

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
              G+PK  ++L   M + G   +   Y+ LL  F + G +  A ++   M+ ++ +P +
Sbjct: 419 CQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNI 478

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
              T+L+E    AG  + A+  F  +   G +PD R    MI    K+ L D+A +L  +
Sbjct: 479 VHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRK 538

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQ 481
           +E DGF P   +Y V++   G LQ
Sbjct: 539 MEDDGFLPNSCSYNVMIQ--GFLQ 560



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 137/324 (42%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ +I+   K      A  + KKM +NG  P++VT + ++    K   ++ A E  
Sbjct: 197 NVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFL 256

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G  P+   YNS++  + N GQ      L   M+   +  +   +  L+    + 
Sbjct: 257 SEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKE 316

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G V  A  +   M  +  +P + +   L++ Y      ++A+  F+ MIR G  P     
Sbjct: 317 GMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSY 376

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +I  Y K   +D+A +LL E+      P   TY+ L+  L +L    EA  L  ++  
Sbjct: 377 NILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCS 436

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
            G  P     V L D + + G   +AL+ L  ++ KK +     +  +I G+   G L+ 
Sbjct: 437 YGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLEV 496

Query: 556 AQRVHGLMEAQGFAASERLKVALI 579
           A+ +   +   G     R    +I
Sbjct: 497 AKELFSKLFGDGTRPDIRTYTVMI 520



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/309 (23%), Positives = 138/309 (44%), Gaps = 12/309 (3%)

Query: 219 QPSRIDWINLLDRL---REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLED 275
           +P+ + +  ++D L   R  N  + F ++E+V  E     NV  Y+ ++        L +
Sbjct: 230 KPNVVTYSTIIDSLCKDRLVNDAMEF-LSEMV--ERGIPPNVFTYNSIVHGFCNLGQLNE 286

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A R+ K+M    ++P+ VT T+LV    K G +  A+  FE++   G +PD   YN+++ 
Sbjct: 287 ATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMD 346

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
            Y           + ++MI  G       Y  L+  + +   +  A  +   M  +   P
Sbjct: 347 GYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNP 406

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
              + + L++   Q G P +A + F  M   G  P+      ++  + K   LD+AL LL
Sbjct: 407 DTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLL 466

Query: 456 LELEKDGFEPGPATYTVLVDWL---GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
             +++   EP    YT+L++ +   G+L++   A++L  K+   G  P  +    +    
Sbjct: 467 KSMKEKKLEPNIVHYTILIEGMFIAGKLEV---AKELFSKLFGDGTRPDIRTYTVMIKGL 523

Query: 513 ARAGIEKKA 521
            + G+  +A
Sbjct: 524 LKEGLSDEA 532



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 81/351 (23%), Positives = 146/351 (41%), Gaps = 2/351 (0%)

Query: 219 QPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           +P+ I +  +++ L +  NT +   V +  + +   + NV  YS +ID+  K+  + DA 
Sbjct: 195 EPNVISYTTVINGLCKTGNTSMAVDVFK-KMEQNGCKPNVVTYSTIIDSLCKDRLVNDAM 253

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
             L +M E GI P++ T   +VH +   G L+ A   F+ +      P+   +  ++   
Sbjct: 254 EFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGL 313

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
              G       + + M   G+E     Y AL+  +     +  A ++  IM  +   P  
Sbjct: 314 CKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGA 373

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
            S  +L+  Y ++   D+A+S    M      PD    ++++    +     +ALNL  E
Sbjct: 374 HSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKE 433

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI 517
           +   G  P   TY +L+D   +   ++EA +LL  + E    P       L +    AG 
Sbjct: 434 MCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGK 493

Query: 518 EKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
            + A +    L     +     +  +I GLL  G   +A  +   ME  GF
Sbjct: 494 LEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGF 544



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/291 (18%), Positives = 122/291 (41%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V ++ K + + AK+        +  +M+   +  ++ +  +L++   +  ++D +    
Sbjct: 92  SVVEFGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYSLNILINCLCRLNHVDFSVSVL 151

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G  PD   +N++I    N G+ K  + L + M+  G E +   Y  ++    + 
Sbjct: 152 GKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKT 211

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G+   A  +   M     +P + + + ++++  +    + A      M+  G  P+    
Sbjct: 212 GNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTY 271

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            S++  +     L++A  L  E+      P   T+T+LVD L +  +++EA  +   ++E
Sbjct: 272 NSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTE 331

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
            G  P      +L D Y    +  +A +    +  K    G   +  +ING
Sbjct: 332 KGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILING 382



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 96/227 (42%), Gaps = 15/227 (6%)

Query: 187 ITGKCKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAEL 246
           I G CK       S   +E  S L   + + L P  + +  L+  L     QL      L
Sbjct: 380 INGYCK-------SRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGL----CQLGRPKEAL 428

Query: 247 VLSEE--SF--QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMY 302
            L +E  S+    N+  Y  L+D   K   L++A ++LK M E  + P+IV  T+L+   
Sbjct: 429 NLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGM 488

Query: 303 SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE 362
             AG L+ AKE F  L   G +PD + Y  MI   +  G       L   M   G   + 
Sbjct: 489 FIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNS 548

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409
             Y  +++ F Q  D   A ++ + M  + F   L +  +L++   Q
Sbjct: 549 CSYNVMIQGFLQNQDSSTAIRLIDEMVGKRFSVNLSTFQMLLDLESQ 595



 Score = 41.2 bits (95), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 66/154 (42%)

Query: 414 DQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVL 473
           D A ++F  M+R+  +P        + ++ KK      ++L  +++         +  +L
Sbjct: 75  DDALASFYRMVRINPRPSVVEFGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYSLNIL 134

Query: 474 VDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE 533
           ++ L RL  ++ +  +LGK+ +LG  P      +L +     G  K+A++    +  +  
Sbjct: 135 INCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGH 194

Query: 534 QMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
           +     +  +INGL   G    A  V   ME  G
Sbjct: 195 EPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNG 228


>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
          Length = 975

 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 118/245 (48%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  +S LID+  KE  L +AE + K+M   GI PD +T T L+  + K  +LD+A +  
Sbjct: 430 NVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMV 489

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + + S G  P+ + +N +I  Y  A +   G+ L   M   G+      Y  L++ F + 
Sbjct: 490 DLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCEL 549

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A ++   M   +  P + +  +L++     G+ ++A   F+ + +   + D    
Sbjct: 550 GKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIY 609

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +I      + +D A +L   L   G +PG  TY +++  L +   ++EAE L  K+ E
Sbjct: 610 NIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEE 669

Query: 496 LGEAP 500
            G AP
Sbjct: 670 DGHAP 674



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 132/320 (41%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E   Q N   Y  +++   K      A  +L+KM E  I  D V  ++++    K G+
Sbjct: 317 MVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGS 376

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           LD A   F  +   G   +   YN +I  + NAG+   G  L+  MI   I  +   +  
Sbjct: 377 LDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSV 436

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+ SF + G +R A ++   M      P   + T L++ + +    D+A    D M+  G
Sbjct: 437 LIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKG 496

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P+ R    +I  Y K N +D  L L  ++   G      TY  L+     L  +N A+
Sbjct: 497 CDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAK 556

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
           +L  ++      P       L D     G  +KAL+    +E  K ++    +  II+G+
Sbjct: 557 ELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGM 616

Query: 548 LAGGFLQDAQRVHGLMEAQG 567
                + DA  +   +  +G
Sbjct: 617 CNASKVDDAWDLFCSLPLKG 636



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 58/261 (22%), Positives = 124/261 (47%), Gaps = 2/261 (0%)

Query: 218 LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           + P  I + +L+D   +E +     ++ +L++S+     N+R ++ LI+ + K N ++D 
Sbjct: 462 IAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGC-DPNIRTFNILINGYCKANRIDDG 520

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
             + +KM+  G+V D VT   L+  + + G L+ AKE F+ + S    P+   Y  ++  
Sbjct: 521 LELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDG 580

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
             + G+ +  + + + +  S +E    IY  ++        V  A  +   + ++  +P 
Sbjct: 581 LCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPG 640

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           +++  +++    + G   +A   F  M   GH PD      +I A+       K++ L+ 
Sbjct: 641 VKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIE 700

Query: 457 ELEKDGFEPGPATYTVLVDWL 477
           EL++ GF    +T  +++D L
Sbjct: 701 ELKRCGFSVDASTIKMVIDML 721



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/322 (22%), Positives = 127/322 (39%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E + + +   YS +ID   K   L++A  +  +M   GI  +I+T  +L+  +  AG 
Sbjct: 352 MEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGR 411

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            D   +    +      P+   ++ +I ++V  G+ +    L   MI  GI      Y +
Sbjct: 412 WDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTS 471

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+  F +   +  A Q+ ++M  +   P + +  +L+  Y +A   D     F  M   G
Sbjct: 472 LIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRG 531

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
              D     ++I  + +   L+ A  L  E+      P   TY +L+D L       +A 
Sbjct: 532 VVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKAL 591

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
           ++  KI +        I   +      A     A      L  K  + G   +  +I GL
Sbjct: 592 EIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGL 651

Query: 548 LAGGFLQDAQRVHGLMEAQGFA 569
              G L +A+ +   ME  G A
Sbjct: 652 CKKGPLSEAELLFRKMEEDGHA 673



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 113/263 (42%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           ++ N   +S LI+    E  + +A  ++ +M E G  PD++T   LV+    +G    A 
Sbjct: 252 YEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAM 311

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
              + +  +G QP+   Y  ++     +GQ  L M L+  M    I+     Y  ++   
Sbjct: 312 LLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGL 371

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + G +  A  + N M ++     + +  +L+  +  AG  D        MI+    P+ 
Sbjct: 372 CKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNV 431

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
              + +I ++ K+  L +A  L  E+   G  P   TYT L+D   +   +++A Q++  
Sbjct: 432 VTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDL 491

Query: 493 ISELGEAPPFKIQVSLCDMYARA 515
           +   G  P  +    L + Y +A
Sbjct: 492 MVSKGCDPNIRTFNILINGYCKA 514



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/326 (21%), Positives = 134/326 (41%), Gaps = 4/326 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+   S +I+   +   L  A   + K+ + G  P+ +T + L++     G +  A E  
Sbjct: 220 NLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELV 279

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + +   G +PD    N+++     +G+    M L+D M+  G + +   Y  +L    + 
Sbjct: 280 DRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKS 339

Query: 376 GDVRGAGQITNIMRIEEFQPTLESC--TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           G    A ++  + ++EE    L++   +++++   + G  D A + F+ M   G   +  
Sbjct: 340 GQTALAMEL--LRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNII 397

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
               +I  +      D    LL ++ K    P   T++VL+D   +   + EAE+L  ++
Sbjct: 398 TYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEM 457

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFL 553
              G AP      SL D + +     KA Q +  + +K        F  +ING      +
Sbjct: 458 IHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRI 517

Query: 554 QDAQRVHGLMEAQGFAASERLKVALI 579
            D   +   M  +G  A       LI
Sbjct: 518 DDGLELFRKMSLRGVVADTVTYNTLI 543



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 73/375 (19%), Positives = 144/375 (38%), Gaps = 6/375 (1%)

Query: 206 DPSPLLAEWKELLQPSRID-WINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLI 264
           D   +L    E L+P+  D WI  +D   +   +    +A +V ++ +     R  S L+
Sbjct: 104 DLRHILTSIGEKLEPNEFDEWIKEVDVGSDGKIRYEDFIARMVANDRNLSYRERLRSGLV 163

Query: 265 DAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQ 324
           D  A     +DA  + + M  +  +P ++  + L    +K    D      + +   G  
Sbjct: 164 DIKA-----DDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIA 218

Query: 325 PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQI 384
            +    + MI  +    +  L  S +  +I  G E +   +  L+      G V  A ++
Sbjct: 219 HNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALEL 278

Query: 385 TNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGK 444
            + M     +P L +   LV     +G   +A    D M+  G +P+      ++    K
Sbjct: 279 VDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCK 338

Query: 445 KNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKI 504
                 A+ LL ++E+   +     Y++++D L +   ++ A  L  ++   G       
Sbjct: 339 SGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIIT 398

Query: 505 QVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLME 564
              L   +  AG      + L  +  +K       F  +I+  +  G L++A+ +H  M 
Sbjct: 399 YNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMI 458

Query: 565 AQGFAASERLKVALI 579
            +G A       +LI
Sbjct: 459 HRGIAPDTITYTSLI 473


>gi|410109901|gb|AFV61030.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           microcephala]
          Length = 431

 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 121/261 (46%), Gaps = 6/261 (2%)

Query: 218 LQPSRIDWINLLD---RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           L+PS + +  L++   RL + +     K A L       Q +V  YS LI+   KE+ ++
Sbjct: 173 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLA---SGVQPDVYTYSVLINGLCKESKMD 229

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           DA  +  +M   G+VP+ VT T L+  + K G +D A E ++ + S    PD   YN++I
Sbjct: 230 DANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLI 289

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
                 G  K    L+D M   G++  +  Y  L+    + GD+  A +    M  E  +
Sbjct: 290 YGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIR 349

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
               + T L+    Q G    A      M+ +G KPD R    +I  + KK  + K   L
Sbjct: 350 LDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKL 409

Query: 455 LLELEKDGFEPGPATYTVLVD 475
           L E+++DG  P   TY VL++
Sbjct: 410 LKEMQRDGHVPSVVTYNVLMN 430



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 87/191 (45%)

Query: 285 ENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPK 344
           E G    +    +L+H + K G++  A+  F+++   G +P    YN+++  Y+  G   
Sbjct: 135 ECGYPASLYFFNILMHRFCKDGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 194

Query: 345 LGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
            G  L   M+ SG++     Y  L+    +   +  A ++ + M ++   P   + T L+
Sbjct: 195 EGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLI 254

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
           + + + G  D A   +  M+     PD     ++I    KK  L +A +L+ E+   G +
Sbjct: 255 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLK 314

Query: 465 PGPATYTVLVD 475
           P   TYT L+D
Sbjct: 315 PDKITYTTLID 325



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/267 (20%), Positives = 111/267 (41%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E  +  ++  ++ L+    K+  +  A+ +   + + G+ P +V+   L++ Y + G+LD
Sbjct: 135 ECGYPASLYFFNILMHRFCKDGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 194

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
                  ++ + G QPD   Y+ +I       +      L D M+  G+  +   +  L+
Sbjct: 195 EGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLI 254

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               + G V  A +I   M  +   P L +   L+    + GD  QA    D M   G K
Sbjct: 255 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLK 314

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     ++I    K+  LD A      + ++        YT L+  L +     +AE++
Sbjct: 315 PDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKM 374

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAG 516
           L ++  +G  P  +    + + + + G
Sbjct: 375 LREMLSVGLKPDARTYTMIINEFCKKG 401


>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Vitis vinifera]
          Length = 582

 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 155/346 (44%), Gaps = 1/346 (0%)

Query: 239 LYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVL 298
           L  KV + +L +    T V  Y+ LI+A   E  + +A ++L++M   G++PD+ T   +
Sbjct: 190 LALKVLDQLLLDNCMPT-VITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAI 248

Query: 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
           +    K G ++RA E   SL S G +PD   YN ++ A++N G+   G  LV  M + G 
Sbjct: 249 IRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGC 308

Query: 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418
           E ++  Y  L+ S  + G +  A  +  +M  +E  P   S   L+ A  + G  D A  
Sbjct: 309 EPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIG 368

Query: 419 NFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLG 478
             DYMI  G  PD     +++AA  K    ++AL +  +L   G  P  ++Y  ++  L 
Sbjct: 369 IMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALW 428

Query: 479 RLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
                + A  ++  +   G  P      SL     R G+ ++A+  L  +E    +    
Sbjct: 429 SCGDRSRALGMVPAMISKGVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVI 488

Query: 539 DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTF 584
            +  ++ GL     + DA  +   M  +G   +E   + LI    F
Sbjct: 489 SYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGF 534



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 147/304 (48%), Gaps = 3/304 (0%)

Query: 242 KVAELV--LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLV 299
           + AEL+  L+ +  + +V  Y+ L+ A   +   ++ E+++ +M   G  P+ VT ++L+
Sbjct: 260 RAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILI 319

Query: 300 HMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
               + G +D A    + +      PD   Y+ +I A    G+  L + ++D MI++G  
Sbjct: 320 SSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCL 379

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
                Y  +L +  + G+   A +I N +R     P + S   ++ A    GD  +A   
Sbjct: 380 PDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGM 439

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
              MI  G  PD+    S+I+   +  L+++A+ LL ++E+ GF P   +Y +++  L +
Sbjct: 440 VPAMISKGVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCK 499

Query: 480 LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD 539
           ++ I++A  +  ++ E G  P     + L +    AG   +A++    L + ++ +  D 
Sbjct: 500 VRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAMELANSLFS-RDVISQDS 558

Query: 540 FERI 543
           F+R+
Sbjct: 559 FKRL 562



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 76/356 (21%), Positives = 141/356 (39%), Gaps = 39/356 (10%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIV---------------- 293
           E   + +V  Y+ +I    K N +E A ++L +M   G +PDIV                
Sbjct: 130 ESHTEPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLG 189

Query: 294 -------------------TSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
                              T T+L+      G ++ A +  E + + G  PD   YN++I
Sbjct: 190 LALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAII 249

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
                 G  +    L+  + + G +     Y  LLR+F   G      ++   M     +
Sbjct: 250 RGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCE 309

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P   + ++L+ +  + G  D+A S    MI     PD      +I+A  K+  LD A+ +
Sbjct: 310 PNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGI 369

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
           +  +  +G  P    Y  ++  L +    N+A ++  K+  +G  P      ++      
Sbjct: 370 MDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWS 429

Query: 515 AGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQDAQRVHGLMEAQGF 568
            G   +AL  +  + +K   + PD+  +  +I+ L   G +++A  +   ME  GF
Sbjct: 430 CGDRSRALGMVPAMISKG--VDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGF 483



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 66/308 (21%), Positives = 133/308 (43%), Gaps = 5/308 (1%)

Query: 262 KLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSH 321
           KL++   K     ++   L+ +   G  PD++  T L+  +    N+++A    E L SH
Sbjct: 73  KLLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILESH 132

Query: 322 GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGA 381
             +PD   YN++I  +    + +    +++ M   G       Y  ++ S      +  A
Sbjct: 133 T-EPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLA 191

Query: 382 GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441
            ++ + + ++   PT+ + T+L+EA    G  ++A    + M+  G  PD     ++I  
Sbjct: 192 LKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRG 251

Query: 442 YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
             K+ ++++A  L+  L   G +P   +Y +L+         +E E+L+ ++   G  P 
Sbjct: 252 MCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPN 311

Query: 502 FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRV 559
                 L     R G   +A+  L  +  K  ++ PD   ++ +I+ L   G L  A  +
Sbjct: 312 KVTYSILISSLCRFGRIDEAISVLKVMIEK--ELTPDTYSYDPLISALCKEGRLDLAIGI 369

Query: 560 HGLMEAQG 567
              M + G
Sbjct: 370 MDYMISNG 377



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/255 (21%), Positives = 109/255 (42%), Gaps = 4/255 (1%)

Query: 236 NTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTS 295
           N  LYF      L  + +  +V   +KLI        +E A R+++ + E+   PD+   
Sbjct: 85  NESLYFLEC---LVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEIL-ESHTEPDVFAY 140

Query: 296 TVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMIT 355
             ++  + K   ++ A +    +++ GF PD   YN MI +  N  +  L + ++D ++ 
Sbjct: 141 NAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLL 200

Query: 356 SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ 415
                +   Y  L+ +    G +  A ++   M      P + +   ++    + G  ++
Sbjct: 201 DNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVER 260

Query: 416 ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
           A      +   G KPD      ++ A+  +   D+   L+ E+   G EP   TY++L+ 
Sbjct: 261 AAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILIS 320

Query: 476 WLGRLQLINEAEQLL 490
            L R   I+EA  +L
Sbjct: 321 SLCRFGRIDEAISVL 335


>gi|413948659|gb|AFW81308.1| hypothetical protein ZEAMMB73_549819 [Zea mays]
          Length = 795

 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 136/303 (44%), Gaps = 4/303 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           + R Y+ +I  +     LE+A R+LKKM+ +G+ PD+VT ++L+  Y K G    A+  F
Sbjct: 269 DTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSVF 328

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           +S+   G +P+  +Y+ ++  Y   G       L+D+MI  GI      +  L+ ++A+ 
Sbjct: 329 DSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKH 388

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G V  A      MR    +P + S + ++    + G  + A  +F+ M+  G  P+    
Sbjct: 389 GAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEGLSPNIISF 448

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            S+I          K   L  E+   G  P       ++D L +   + EA+     +  
Sbjct: 449 TSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIH 508

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFL 553
           +G  P      +L D Y   G   ++++ L  + +    + PD   +  ++NG    G +
Sbjct: 509 IGVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIG--LRPDSWTYNSLLNGYFKNGRV 566

Query: 554 QDA 556
           +DA
Sbjct: 567 EDA 569



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 133/304 (43%), Gaps = 4/304 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ +ID   KE  ++ A  +  +M   G+ PD+VT   L+    KA  +D+A    
Sbjct: 199 NVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAIL 258

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + +   G  PD + YN MI  Y + GQ +  + L+  M  SG++     Y  L++ + + 
Sbjct: 259 QHMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKI 318

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G    A  + + M  +  +P      +L+  Y   G     R   D MIR G   + R  
Sbjct: 319 GRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAF 378

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +I AY K   +DKA+    E+ ++G  P   +Y+ ++  L +   + +A     ++  
Sbjct: 379 NILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVS 438

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF--ERIINGLLAGGFL 553
            G +P      SL       G E K ++ L F E     + PD      I++ L   G +
Sbjct: 439 EGLSPNIISFTSLIHGLCSIG-EWKKVEELAF-EMINRGIHPDAIFMNTIMDNLCKEGRV 496

Query: 554 QDAQ 557
            +AQ
Sbjct: 497 VEAQ 500



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/253 (20%), Positives = 111/253 (43%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +  E    N+  ++ LI         +  E +  +M   GI PD +    ++    K G 
Sbjct: 436 MVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGR 495

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A++ F+ +   G +PD   YN++I  Y   G+    +  +D M++ G+      Y +
Sbjct: 496 VVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDSWTYNS 555

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           LL  + + G V  A  +   M  ++ +    +  +++    QAG    AR  +  M+  G
Sbjct: 556 LLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIMLHGLFQAGRIVAARELYMKMVDRG 615

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            +       +++    + + +D+AL +  +L    FE    T++++++ L ++  I+EA+
Sbjct: 616 TQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVRTFSIVINALLKVGRIDEAK 675

Query: 488 QLLGKISELGEAP 500
            L   +   G  P
Sbjct: 676 SLFSAMVLRGPVP 688



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 77/188 (40%)

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
            P + S   +++ + + G+ D+A   F  M+  G  PD     S+I    K   +DKA+ 
Sbjct: 197 SPNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVA 256

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
           +L  +   G  P   TY +++     L  + EA +LL K+S  G  P       L   Y 
Sbjct: 257 ILQHMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYC 316

Query: 514 RAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASER 573
           + G   +A      +  K ++     +  +++G    G L D + +  LM   G     R
Sbjct: 317 KIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHR 376

Query: 574 LKVALISS 581
               LI +
Sbjct: 377 AFNILICA 384



 Score = 43.5 bits (101), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 48/87 (55%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L  + F+ +VR +S +I+A  K   +++A+ +   M   G VPD++T ++++  + + G 
Sbjct: 646 LRSKEFELDVRTFSIVINALLKVGRIDEAKSLFSAMVLRGPVPDVITYSLMIKSHIEEGL 705

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMI 334
           L+ +   F S+  +G   D  + N ++
Sbjct: 706 LEESDNLFLSMEKNGCAADSHMLNIIV 732



 Score = 43.5 bits (101), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 61/278 (21%), Positives = 106/278 (38%), Gaps = 13/278 (4%)

Query: 304 KAGNLDR--AKEAFESLRSHGFQPDKKVYNSMIMAYVNA---GQPK----LGMSLVDMMI 354
           ++G+L R  A   F+ L           +NS++     A     P+    L +SL + M+
Sbjct: 24  RSGSLGREDALNLFDELLPQARPASVHAFNSVLTVVARADSSSSPRHSAALAVSLFNTMV 83

Query: 355 TSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPD 414
            SG+     I   L+R F   G +  A     +     ++    +   L++        D
Sbjct: 84  RSGVNMMAAIIGILIRCFCTVGRLDLAFAAFALFLKTGWRVQNVTLNQLIKGLCDGNRTD 143

Query: 415 QARSN-FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG---FEPGPATY 470
            A    F  M  LG+ PD     ++I     +    +AL LL+ +  DG     P   +Y
Sbjct: 144 DAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLIHMTADGGYNCSPNVVSY 203

Query: 471 TVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEA 530
             ++D   +   +++A  L  ++   G  P      SL D   +A    KA+  L  +  
Sbjct: 204 NTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFD 263

Query: 531 KKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
           K        +  +I G  + G L++A R+   M   G 
Sbjct: 264 KGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGL 301


>gi|242050640|ref|XP_002463064.1| hypothetical protein SORBIDRAFT_02g037020 [Sorghum bicolor]
 gi|241926441|gb|EER99585.1| hypothetical protein SORBIDRAFT_02g037020 [Sorghum bicolor]
          Length = 558

 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 119/259 (45%), Gaps = 37/259 (14%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +I+A       + A  + KKM ENG+ PD++T  +++  +       +A   FE ++
Sbjct: 226 YNNVINACGAAGNWKKALELCKKMTENGVGPDLITHNIVLSAFKNGAQYSKAIAYFEIMK 285

Query: 320 SHGFQPDKKV-------------------------------------YNSMIMAYVNAGQ 342
           S    PD                                        Y S++ +Y   GQ
Sbjct: 286 SSKVAPDTCTMNIVIHCLVKVALYGEAIELFNSMRERRTICPPDVVTYTSIMYSYSVCGQ 345

Query: 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402
            +   ++ DMM+  G+  +   Y ALL ++A  G    A +   +++   F+P + S T 
Sbjct: 346 AENCKAVFDMMVAEGVRPNIVSYNALLGAYASHGMHTEALETFKLLKQNGFKPDIVSYTS 405

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           L+ AYG++  P++AR  F+ M +   KP+     ++I AYG   +L +A++LL E+E+DG
Sbjct: 406 LLNAYGRSALPEKAREVFNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDG 465

Query: 463 FEPGPATYTVLVDWLGRLQ 481
            +P   + + L+   GR +
Sbjct: 466 IQPDVISISTLLTACGRCR 484



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 74/326 (22%), Positives = 146/326 (44%), Gaps = 15/326 (4%)

Query: 221 SRIDWINLLDRLREQNTQ------LYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           +R D   ++ RL  ++ Q      L+F+     + E   + +   Y+ LI AHA+     
Sbjct: 151 ARNDIYGMMIRLHARHNQVDQARGLFFE-----MQEWRCKPDTDTYNSLIHAHARAGQWR 205

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
            A  I+  M    I P   T   +++    AGN  +A E  + +  +G  PD   +N ++
Sbjct: 206 WAINIMDDMQRAAIPPSRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLITHNIVL 265

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE-- 392
            A+ N  Q    ++  ++M +S +         ++    +      A ++ N MR     
Sbjct: 266 SAFKNGAQYSKAIAYFEIMKSSKVAPDTCTMNIVIHCLVKVALYGEAIELFNSMRERRTI 325

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P + + T ++ +Y   G  +  ++ FD M+  G +P+     +++ AY    +  +AL
Sbjct: 326 CPPDVVTYTSIMYSYSVCGQAENCKAVFDMMVAEGVRPNIVSYNALLGAYASHGMHTEAL 385

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
                L+++GF+P   +YT L++  GR  L  +A ++  ++ +    P      +L D Y
Sbjct: 386 ETFKLLKQNGFKPDIVSYTSLLNAYGRSALPEKAREVFNEMRKNACKPNKVSYNALIDAY 445

Query: 513 ARAGIEKKALQALGFLEAKKEQMGPD 538
             AG+ K+A+  L   E +++ + PD
Sbjct: 446 GSAGMLKEAISLLH--EMEQDGIQPD 469



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 86/185 (46%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++  E  + N+  Y+ L+ A+A      +A    K + +NG  PDIV+ T L++ Y ++ 
Sbjct: 355 MMVAEGVRPNIVSYNALLGAYASHGMHTEALETFKLLKQNGFKPDIVSYTSLLNAYGRSA 414

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
             ++A+E F  +R +  +P+K  YN++I AY +AG  K  +SL+  M   GI+       
Sbjct: 415 LPEKAREVFNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPDVISIS 474

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            LL +  +C      G I    +    Q    +    + +Y   GD  +A   +  M   
Sbjct: 475 TLLTACGRCRQPTKIGIILAAAKSRGIQLNTVAYNSGIGSYLSLGDYKKALELYTSMRTG 534

Query: 427 GHKPD 431
             KPD
Sbjct: 535 NVKPD 539



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 107/241 (44%), Gaps = 4/241 (1%)

Query: 239 LYFKVAELVLSEESFQT----NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVT 294
           LY +  EL  S    +T    +V  Y+ ++ +++     E+ + +   M   G+ P+IV+
Sbjct: 308 LYGEAIELFNSMRERRTICPPDVVTYTSIMYSYSVCGQAENCKAVFDMMVAEGVRPNIVS 367

Query: 295 STVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMI 354
              L+  Y+  G    A E F+ L+ +GF+PD   Y S++ AY  +  P+    + + M 
Sbjct: 368 YNALLGAYASHGMHTEALETFKLLKQNGFKPDIVSYTSLLNAYGRSALPEKAREVFNEMR 427

Query: 355 TSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPD 414
            +  + ++  Y AL+ ++   G ++ A  + + M  +  QP + S + L+ A G+   P 
Sbjct: 428 KNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPDVISISTLLTACGRCRQPT 487

Query: 415 QARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
           +           G + +     S I +Y       KAL L   +     +P   TY +L+
Sbjct: 488 KIGIILAAAKSRGIQLNTVAYNSGIGSYLSLGDYKKALELYTSMRTGNVKPDAVTYNILI 547

Query: 475 D 475
            
Sbjct: 548 S 548



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 62/132 (46%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + + + + N   Y+ LIDA+     L++A  +L +M ++GI PD+++ + L+    +   
Sbjct: 426 MRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPDVISISTLLTACGRCRQ 485

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
             +      + +S G Q +   YNS I +Y++ G  K  + L   M T  ++     Y  
Sbjct: 486 PTKIGIILAAAKSRGIQLNTVAYNSGIGSYLSLGDYKKALELYTSMRTGNVKPDAVTYNI 545

Query: 368 LLRSFAQCGDVR 379
           L+    + G  R
Sbjct: 546 LISGSCKLGSFR 557


>gi|449461223|ref|XP_004148341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Cucumis sativus]
 gi|449507064|ref|XP_004162923.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Cucumis sativus]
          Length = 844

 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 136/321 (42%), Gaps = 14/321 (4%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ ++    K++  E+  +IL  M  NG  P+ +T   L+ M    G        F
Sbjct: 442 NVCTYNSILALLGKKSRSEEMIKILSDMRINGCPPNRITWNTLLAMCGDKGKHKFVNHVF 501

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +++ GF+P K  +N++I AY   G       + D M+ +G       Y ALL + A+ 
Sbjct: 502 REMKNCGFEPGKDTFNTLISAYGRCGSELDAAKMYDEMMKAGFTPCATTYNALLNALARR 561

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK------ 429
           GD + A  +   MR + F+P   S +L++  Y + G       N   + R+G        
Sbjct: 562 GDWKAAESVLLDMRNKGFKPNETSFSLMLHCYAKGG-------NVRGLERIGKDIYDGQI 614

Query: 430 -PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQ 488
            P      ++I A  K   +        EL K+G++P    +  ++    +  +   A++
Sbjct: 615 FPSWVLLRTLILANFKCRAVRGMERAFEELMKNGYKPDMVIFNSMLSIFAKNNMYERAQK 674

Query: 489 LLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLL 548
           +L  I E G  P      SL +MYAR G   KA + L  L    E      +  II G  
Sbjct: 675 MLDLIRESGLQPDLVTYNSLMNMYARRGECWKAEEILKGLIKSGESPDLVSYNTIIKGFC 734

Query: 549 AGGFLQDAQRVHGLMEAQGFA 569
             G +Q+A RV   M  +G  
Sbjct: 735 RQGLMQEAIRVMSEMTTRGIC 755



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 80/370 (21%), Positives = 167/370 (45%), Gaps = 10/370 (2%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELV--LSEESFQTNVRDYSKLIDAHAKENCLED 275
           L PS + +  +LD +  +  + + K+ +L+  +  E  Q +    S +I A  +E  + +
Sbjct: 263 LSPSLVTYNVMLD-VYGKMGRSWDKILDLLDEMRNEGLQFDEFTCSTVISACGREGLINE 321

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A+    ++  +G  P  VT   L+ ++ KAG    A    + +  +    D   YN ++ 
Sbjct: 322 AKEFFVELKSSGYEPGTVTYNALLQVFGKAGIYSEALNILKEMEDNNCTLDSVTYNELVA 381

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
           AYV AG  + G +++D M   G+  +   Y  ++ ++ + G    A Q+ N M+     P
Sbjct: 382 AYVRAGFYEEGATVIDTMTRKGVMPNAVTYTTVINAYGRAGKEVKALQLFNQMKKSGCVP 441

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT-ASMIAAYGKKNLLDKALNL 454
            + +   ++   G+    ++       M R+   P +R T  +++A  G K       ++
Sbjct: 442 NVCTYNSILALLGKKSRSEEMIKILSDM-RINGCPPNRITWNTLLAMCGDKGKHKFVNHV 500

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
             E++  GFEPG  T+  L+   GR     +A ++  ++ + G  P      +L +  AR
Sbjct: 501 FREMKNCGFEPGKDTFNTLISAYGRCGSELDAAKMYDEMMKAGFTPCATTYNALLNALAR 560

Query: 515 AGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQDAQRV-HGLMEAQGFAAS 571
            G  K A   L  L+ + +   P++  F  +++    GG ++  +R+   + + Q F + 
Sbjct: 561 RGDWKAAESVL--LDMRNKGFKPNETSFSLMLHCYAKGGNVRGLERIGKDIYDGQIFPSW 618

Query: 572 ERLKVALISS 581
             L+  ++++
Sbjct: 619 VLLRTLILAN 628



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 142/347 (40%), Gaps = 46/347 (13%)

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A ++L K+  +    D+   T ++H YS+ G   +A   FE ++  G  P    YN M+ 
Sbjct: 216 ALKLLDKIPIDKYSLDVRACTTILHAYSRNGKYKQAIAMFERMKDCGLSPSLVTYNVMLD 275

Query: 336 AYVNAGQP--KLGMSLVDMM-----------------------------------ITSGI 358
            Y   G+   K+ + L+D M                                    +SG 
Sbjct: 276 VYGKMGRSWDKI-LDLLDEMRNEGLQFDEFTCSTVISACGREGLINEAKEFFVELKSSGY 334

Query: 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMR-IEEFQPTLESCTL--LVEAYGQAGDPDQ 415
           E     Y ALL+ F + G    A    NI++ +E+   TL+S T   LV AY +AG  ++
Sbjct: 335 EPGTVTYNALLQVFGKAGIYSEA---LNILKEMEDNNCTLDSVTYNELVAAYVRAGFYEE 391

Query: 416 ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
             +  D M R G  P+     ++I AYG+     KAL L  +++K G  P   TY  ++ 
Sbjct: 392 GATVIDTMTRKGVMPNAVTYTTVINAYGRAGKEVKALQLFNQMKKSGCVPNVCTYNSILA 451

Query: 476 WLGRLQLINEAEQLLGKISELGEAPPFKIQ-VSLCDMYARAGIEKKALQALGFLEAKKEQ 534
            LG+     E  ++L  +  +   PP +I   +L  M    G  K        ++    +
Sbjct: 452 LLGKKSRSEEMIKILSDM-RINGCPPNRITWNTLLAMCGDKGKHKFVNHVFREMKNCGFE 510

Query: 535 MGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
            G D F  +I+     G   DA +++  M   GF        AL+++
Sbjct: 511 PGKDTFNTLISAYGRCGSELDAAKMYDEMMKAGFTPCATTYNALLNA 557



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/262 (20%), Positives = 114/262 (43%), Gaps = 3/262 (1%)

Query: 241 FKVAELVL---SEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTV 297
           +K AE VL     + F+ N   +S ++  +AK   +   ERI K + +  I P  V    
Sbjct: 564 WKAAESVLLDMRNKGFKPNETSFSLMLHCYAKGGNVRGLERIGKDIYDGQIFPSWVLLRT 623

Query: 298 LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG 357
           L+    K   +   + AFE L  +G++PD  ++NSM+  +      +    ++D++  SG
Sbjct: 624 LILANFKCRAVRGMERAFEELMKNGYKPDMVIFNSMLSIFAKNNMYERAQKMLDLIRESG 683

Query: 358 IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
           ++     Y +L+  +A+ G+   A +I   +      P L S   +++ + + G   +A 
Sbjct: 684 LQPDLVTYNSLMNMYARRGECWKAEEILKGLIKSGESPDLVSYNTIIKGFCRQGLMQEAI 743

Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
                M   G  P      + ++ Y  + +  +   ++  + +   +P   TY ++VD  
Sbjct: 744 RVMSEMTTRGICPCIFTYNTFVSGYAGRGMFAEVDEVISYMIQKNCKPNELTYKIIVDGY 803

Query: 478 GRLQLINEAEQLLGKISELGEA 499
            + +   +A   +  I  + ++
Sbjct: 804 CKARKYQDAMDFIFGIKNIDDS 825


>gi|359493281|ref|XP_002272603.2| PREDICTED: pentatricopeptide repeat-containing protein At5g55840-like
            [Vitis vinifera]
          Length = 2037

 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 82/364 (22%), Positives = 152/364 (41%), Gaps = 35/364 (9%)

Query: 253  FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
            F+ +V   + ++ +  K+   E    + ++M++ GI P++ T  +L++     GNL +A 
Sbjct: 945  FKPSVYTCNMILASMVKDKRTELVWSLFREMSDKGICPNVGTFNILINGLCVEGNLKKAG 1004

Query: 313  EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE------------- 359
               + +  +GF P    YN+++  Y   G+ K  + L+D MI  GIE             
Sbjct: 1005 NLLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNL 1064

Query: 360  ----RSEEIYL------------------ALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
                RS + YL                   L+  F + G +  A Q+ N M   +  P  
Sbjct: 1065 CTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNC 1124

Query: 398  ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
             +   L+  +   GD ++A    D+M   G + ++    +++    K    + A  LL  
Sbjct: 1125 VTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLER 1184

Query: 458  LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI 517
            +  +    G   YTVL+D L +  +++EA QL+G + + G  P      SL + + R G 
Sbjct: 1185 MRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGN 1244

Query: 518  EKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVA 577
             K A + +  +      +    +  +I      G + +A +V+ +M   G  A       
Sbjct: 1245 IKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNV 1304

Query: 578  LISS 581
            L+SS
Sbjct: 1305 LVSS 1308



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 106/234 (45%)

Query: 260  YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
            Y  L++   K    E A+R+L++M  N +V   +  TVL+    K G LD A +   ++ 
Sbjct: 1162 YGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMY 1221

Query: 320  SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
              G  PD   Y+S+I  +   G  K    ++  M  SG+  ++ IY  L+ +F Q G+V 
Sbjct: 1222 KDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVT 1281

Query: 380  GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
             A ++  +M          +C +LV +  + G   +A     +M R+G  P+      +I
Sbjct: 1282 EAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCII 1341

Query: 440  AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
              YG       A +   ++ K G  P   TY  L+  L +   + EA++ L ++
Sbjct: 1342 NGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRL 1395



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 140/339 (41%), Gaps = 22/339 (6%)

Query: 229  LDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAH--AKENCLEDAERILKKMNEN 286
            L +LR  + +L  K  + V+ +   +     +   + AH   K    + A+ IL+ + + 
Sbjct: 833  LKQLRPVHGRLALKFLKWVIKQPGLELKHLTHMYCLTAHILVKARMYDSAKSILRHLCQM 892

Query: 287  GI------------------VPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKK 328
            GI                  +P +    +L+ +Y K G +D A E FE +   GF+P   
Sbjct: 893  GIGSKSIFGALMDTYPLCNSIPSVFD--LLIRVYLKEGMIDYAVETFELVGLVGFKPSVY 950

Query: 329  VYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIM 388
              N ++ + V   + +L  SL   M   GI  +   +  L+      G+++ AG +   M
Sbjct: 951  TCNMILASMVKDKRTELVWSLFREMSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQM 1010

Query: 389  RIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLL 448
                F PT+ +   L+  Y + G    A    DYMI  G + D       I      +  
Sbjct: 1011 EENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRS 1070

Query: 449  DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSL 508
             KA  LL ++ K+   P   TY  L++   +   I  A Q+  ++S+   +P      +L
Sbjct: 1071 AKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNAL 1130

Query: 509  CDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
               +   G  ++AL+ L  +EA   ++    +  ++NGL
Sbjct: 1131 IGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGTLLNGL 1169



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/292 (20%), Positives = 118/292 (40%)

Query: 260  YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
            ++ +ID+ ++   +  A      M   G+ P++ T  +L+H +SK   L R    + ++ 
Sbjct: 1513 FNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMM 1572

Query: 320  SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
              G  PDK  ++S+I+    +G P LG+ L+  MI  G    +  +  L+  +++ G +R
Sbjct: 1573 REGIFPDKLTFHSLILGLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMR 1632

Query: 380  GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
             A  + N M      P  ++   +     +     ++      M+  G  P      ++I
Sbjct: 1633 KAFDLVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLI 1692

Query: 440  AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
                +   +  A  L  E+E  GF       + +V  L       +A  +L  +  +   
Sbjct: 1693 NGMCRVGDIQGAFKLKDEMEALGFGSHEVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLL 1752

Query: 500  PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGG 551
            P      +L   + R     +AL+  G +E    ++    +  +I G+ A G
Sbjct: 1753 PTIATFTTLMHRFCRDAKIAEALKLKGVMELCGLKLDVVAYNVLIMGMCANG 1804



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 74/343 (21%), Positives = 132/343 (38%), Gaps = 41/343 (11%)

Query: 254  QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
            + +V  Y+  ID     +    A  +LKKM +  I P+ VT   L++ + K G +  A +
Sbjct: 1051 EADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQ 1110

Query: 314  AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
             F  +      P+   YN++I  + + G  +  + L+D M  +G+  +E  Y  LL    
Sbjct: 1111 VFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGTLLNGLC 1170

Query: 374  QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
            +      A ++   MR+ +      + T+L++   + G  D+A      M + G  PD  
Sbjct: 1171 KHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVI 1230

Query: 434  CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYT---------------------- 471
              +S+I  + +   +  A  ++  + + G       Y+                      
Sbjct: 1231 TYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVM 1290

Query: 472  -------------VLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
                         VLV  L R   + EAE+ L  +S +G  P       + + Y   G  
Sbjct: 1291 NCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIG-- 1348

Query: 519  KKALQALGFL-EAKKEQMGPDDFE--RIINGLLAGGFLQDAQR 558
               L A  F  +  K    P  F    ++ GL  GG L +A++
Sbjct: 1349 -DPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKK 1390



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 74/328 (22%), Positives = 135/328 (41%), Gaps = 15/328 (4%)

Query: 260  YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
            Y+ L+    K   L +A  +  KM +N ++PD  T + L+    + G    A   F +  
Sbjct: 1407 YNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAM 1466

Query: 320  SHG-FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
              G   P+  +Y  ++     AG PK      + M+  G       + A++ S ++ G +
Sbjct: 1467 GRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQM 1526

Query: 379  RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
              A    + MR     P L +  +L+  + +     +  S +  M+R G  PD     S+
Sbjct: 1527 MKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSL 1586

Query: 439  IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
            I    K  + D  + LL ++  +G      T+ +L++       + +A  L+  ++ LG 
Sbjct: 1587 ILGLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGV 1646

Query: 499  APPFKIQVSLCDMYARA--GIEKKAL---QALGFLEAKKEQMGPDDFERI--INGLLAGG 551
             P         D Y     G+ KK+      +   E  +  + P   + I  ING+   G
Sbjct: 1647 FPDR-------DTYNHIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLINGMCRVG 1699

Query: 552  FLQDAQRVHGLMEAQGFAASERLKVALI 579
             +Q A ++   MEA GF + E  + A++
Sbjct: 1700 DIQGAFKLKDEMEALGFGSHEVAESAMV 1727



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 64/291 (21%), Positives = 123/291 (42%), Gaps = 5/291 (1%)

Query: 260  YSKLIDAHAKENCLEDAERILKKMNE-NGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318
            Y  L+    K   L +A++ L +++   G V  ++ +T+L     K+GNL  A   F+ +
Sbjct: 1372 YGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAET-CKSGNLHEAVALFDKM 1430

Query: 319  RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG-IERSEEIYLALLRSFAQCGD 377
              +   PD   Y+S++      G+    + L    +  G +  +  +Y  L+   ++ G 
Sbjct: 1431 VQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTCLVDGLSKAGH 1490

Query: 378  VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
             + A      M  +   P   +   ++++  + G   +A   F  M   G  P+      
Sbjct: 1491 PKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNI 1550

Query: 438  MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK-ISEL 496
            ++  + KK  L + L+L   + ++G  P   T+  L+  L +  + +   +LLGK I E 
Sbjct: 1551 LLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGVKLLGKMIMEG 1610

Query: 497  GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
              A  F   + L + Y+ +G  +KA   + F+         D +  I NGL
Sbjct: 1611 TLADQFTFNI-LINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGL 1660



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/273 (20%), Positives = 108/273 (39%), Gaps = 35/273 (12%)

Query: 260  YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
            +  LI   +K    +   ++L KM   G + D  T  +L++ YS++G + +A +    + 
Sbjct: 1583 FHSLILGLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMRKAFDLVNFMN 1642

Query: 320  SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
            + G  PD+  YN +          +    ++  M+ +G+      Y+ L+    + GD++
Sbjct: 1643 TLGVFPDRDTYNHIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQ 1702

Query: 380  GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            GA ++ + M    F     + + +V      G  + A    D+M+R+   P      +++
Sbjct: 1703 GAFKLKDEMEALGFGSHEVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLM 1762

Query: 440  AAYGKKNLLDKALNL-----LLELEKD-------------------GFE----------- 464
              + +   + +AL L     L  L+ D                    FE           
Sbjct: 1763 HRFCRDAKIAEALKLKGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLC 1822

Query: 465  PGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
            P   TY VLVD +     + + E+LL  + E G
Sbjct: 1823 PNITTYAVLVDAISAANNLIQGEKLLTDLQERG 1855



 Score = 46.6 bits (109), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 45/241 (18%), Positives = 107/241 (44%), Gaps = 12/241 (4%)

Query: 258  RD-YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
            RD Y+ + +   K++   ++  +L +M ENG++P       L++   + G++  A +  +
Sbjct: 1650 RDTYNHIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKLKD 1709

Query: 317  SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
             + + GF   +   ++M+   ++ G+ +  M ++D M+   +  +   +  L+  F +  
Sbjct: 1710 EMEALGFGSHEVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDA 1769

Query: 377  DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
             +  A ++  +M +   +  + +  +L+      GD   A   ++ M      P+    A
Sbjct: 1770 KIAEALKLKGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPNITTYA 1829

Query: 437  SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN-EAEQLLGKISE 495
             ++ A    N L +   LL +L++ G          L+ W G  Q ++ E    +GK++ 
Sbjct: 1830 VLVDAISAANNLIQGEKLLTDLQERG----------LISWGGSTQHLDKELTVAMGKLNY 1879

Query: 496  L 496
            +
Sbjct: 1880 I 1880



 Score = 45.8 bits (107), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 94/242 (38%)

Query: 256  NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
            N+  Y+ L+   +K+  L     +   M   GI PD +T   L+   SK+G  D   +  
Sbjct: 1544 NLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGVKLL 1603

Query: 316  ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
              +   G   D+  +N +I  Y  +G+ +    LV+ M T G+    + Y  +     + 
Sbjct: 1604 GKMIMEGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNKK 1663

Query: 376  GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
               R +  + + M      P       L+    + GD   A    D M  LG    +   
Sbjct: 1664 SAFRESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAE 1723

Query: 436  ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++M+         + A+ +L  + +    P  AT+T L+    R   I EA +L G +  
Sbjct: 1724 SAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALKLKGVMEL 1783

Query: 496  LG 497
             G
Sbjct: 1784 CG 1785


>gi|15224262|ref|NP_179484.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75099137|sp|O64624.1|PP163_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g18940
 gi|3004555|gb|AAC09028.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|15983785|gb|AAL10489.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
 gi|38564280|gb|AAR23719.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
 gi|330251736|gb|AEC06830.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 86/361 (23%), Positives = 157/361 (43%), Gaps = 16/361 (4%)

Query: 215 KELLQPSRIDWINLLDRL-----REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAK 269
           K+ + P+ I +  ++D        ++  +L++      + E     N   Y+ ++    K
Sbjct: 379 KKGVMPNAITYTTVIDAYGKAGKEDEALKLFYS-----MKEAGCVPNTCTYNAVLSLLGK 433

Query: 270 ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKV 329
           ++   +  ++L  M  NG  P+  T   ++ +    G        F  ++S GF+PD+  
Sbjct: 434 KSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDT 493

Query: 330 YNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389
           +N++I AY   G       +   M  +G       Y ALL + A+ GD R    + + M+
Sbjct: 494 FNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMK 553

Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK-PDDRCTASMIAAYGKKNLL 448
            + F+PT  S +L+++ Y + G+        +  I+ G   P      +++ A  K   L
Sbjct: 554 SKGFKPTETSYSLMLQCYAKGGN-YLGIERIENRIKEGQIFPSWMLLRTLLLANFKCRAL 612

Query: 449 DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSL 508
             +       +K G++P    +  ++    R  + ++AE +L  I E G +P      SL
Sbjct: 613 AGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSL 672

Query: 509 CDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQ 566
            DMY R G   KA + L  LE  K Q+ PD   +  +I G    G +Q+A R+   M  +
Sbjct: 673 MDMYVRRGECWKAEEILKTLE--KSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTER 730

Query: 567 G 567
           G
Sbjct: 731 G 731



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 96/446 (21%), Positives = 187/446 (41%), Gaps = 60/446 (13%)

Query: 185 KPITG--------KCKLITDKILSLEKEEDPS------PLLAEWKELLQPS---RIDW-- 225
           +P+TG        K +L+   ++SL K  D S        L EW  L   S   ++D   
Sbjct: 118 QPLTGLSRFFDSVKSELLRTDLVSLVKGLDDSGHWERAVFLFEWLVLSSNSGALKLDHQV 177

Query: 226 INLLDRLREQNTQLYFKVAELVLSE---ESFQTNVRDYSKLIDAHAKENCLEDAERILKK 282
           I +  R+  + +Q  + VA  +L +   + +  +VR Y+ ++ A+++    E A  + ++
Sbjct: 178 IEIFVRILGRESQ--YSVAAKLLDKIPLQEYLLDVRAYTTILHAYSRTGKYEKAIDLFER 235

Query: 283 MNENGIVPDIVTSTVLVHMYSKAGN----------------------------------- 307
           M E G  P +VT  V++ ++ K G                                    
Sbjct: 236 MKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREG 295

Query: 308 -LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            L  AKE F  L+S G++P    YN+++  +  AG     +S++  M  +        Y 
Sbjct: 296 LLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYN 355

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+ ++ + G  + A  +  +M  +   P   + T +++AYG+AG  D+A   F  M   
Sbjct: 356 ELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEA 415

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G  P+     ++++  GKK+  ++ + +L +++ +G  P  AT+  ++   G   +    
Sbjct: 416 GCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFV 475

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
            ++  ++   G  P      +L   Y R G E  A +  G +           +  ++N 
Sbjct: 476 NRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNA 535

Query: 547 LLAGGFLQDAQRVHGLMEAQGFAASE 572
           L   G  +  + V   M+++GF  +E
Sbjct: 536 LARKGDWRSGENVISDMKSKGFKPTE 561



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/231 (21%), Positives = 110/231 (47%), Gaps = 8/231 (3%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E S   +   Y++L+ A+ +    ++A  +++ M + G++P+ +T T ++  Y KAG 
Sbjct: 342 MEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGK 401

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            D A + F S++  G  P+   YN+++       +    + ++  M ++G   +   +  
Sbjct: 402 EDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNT 461

Query: 368 LLRSFAQCGDVRGAGQITNI----MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
           +L   A CG+ +G  +  N     M+   F+P  ++   L+ AYG+ G    A   +  M
Sbjct: 462 ML---ALCGN-KGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEM 517

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
            R G         +++ A  +K       N++ +++  GF+P   +Y++++
Sbjct: 518 TRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLML 568



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/300 (20%), Positives = 124/300 (41%), Gaps = 2/300 (0%)

Query: 219 QPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAER 278
            P+R  W  +L     +    +       +    F+ +   ++ LI A+ +     DA +
Sbjct: 453 SPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASK 512

Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338
           +  +M   G    + T   L++  ++ G+    +     ++S GF+P +  Y+ M+  Y 
Sbjct: 513 MYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYA 572

Query: 339 NAGQPKLGMSLVDMMITSG-IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
             G   LG+  ++  I  G I  S  +   LL +  +C  + G+ +   + +   ++P +
Sbjct: 573 KGGN-YLGIERIENRIKEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDM 631

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
                ++  + +    DQA    + +   G  PD     S++  Y ++    KA  +L  
Sbjct: 632 VIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKT 691

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI 517
           LEK   +P   +Y  ++    R  L+ EA ++L +++E G  P      +    Y   G+
Sbjct: 692 LEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGM 751



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/281 (18%), Positives = 110/281 (39%), Gaps = 35/281 (12%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           ++   F   V  Y+ L++A A++      E ++  M   G  P   + ++++  Y+K GN
Sbjct: 517 MTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGN 576

Query: 308 L-------DRAKE----------------------------AFESLRSHGFQPDKKVYNS 332
                   +R KE                            AF   + HG++PD  ++NS
Sbjct: 577 YLGIERIENRIKEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNS 636

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           M+  +           +++ +   G+      Y +L+  + + G+   A +I   +   +
Sbjct: 637 MLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQ 696

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
            +P L S   +++ + + G   +A      M   G +P      + ++ Y    +  +  
Sbjct: 697 LKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAEIE 756

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
           +++  + K+   P   T+ ++VD   R    +EA   + KI
Sbjct: 757 DVIECMAKNDCRPNELTFKMVVDGYCRAGKYSEAMDFVSKI 797



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 82/184 (44%), Gaps = 8/184 (4%)

Query: 241 FKVAELVLSEESF--------QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDI 292
           FK   L  SE +F        + ++  ++ ++    + N  + AE IL+ + E+G+ PD+
Sbjct: 607 FKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDL 666

Query: 293 VTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDM 352
           VT   L+ MY + G   +A+E  ++L     +PD   YN++I  +   G  +  + ++  
Sbjct: 667 VTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSE 726

Query: 353 MITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGD 412
           M   GI      Y   +  +   G       +   M   + +P   +  ++V+ Y +AG 
Sbjct: 727 MTERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKNDCRPNELTFKMVVDGYCRAGK 786

Query: 413 PDQA 416
             +A
Sbjct: 787 YSEA 790


>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 129/281 (45%), Gaps = 2/281 (0%)

Query: 245 ELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK 304
           E+V++    + N   Y+ L+ AHAKE  +E++  IL++M E GI+PD+     L+  + K
Sbjct: 441 EMVMN--GLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCK 498

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
           A  ++ A+     +     +P+   Y + I  Y  AG+ ++     + M++ G+  +  I
Sbjct: 499 AKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGI 558

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
           Y AL+    + G+V  A  +   +        +++ ++L+    + G   +A   F  + 
Sbjct: 559 YTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQ 618

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
             G  P+     S+I+   K+  +DKA  LL E+   G  P   TY +L+D L +   I 
Sbjct: 619 EKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIE 678

Query: 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
            A+ L   I   G  P      ++ D Y ++     A Q L
Sbjct: 679 RAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLL 719



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/324 (21%), Positives = 142/324 (43%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LID   ++  +E A RI  +M   GI  +++    L++   KAG +++A E  + + 
Sbjct: 314 YNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMM 373

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +PD + Y+ +I  +           L+D M    +  +   Y  ++    +CG+++
Sbjct: 374 EKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQ 433

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
           G   I   M +   +P     T L+ A+ + G  +++R   + M   G  PD  C  S+I
Sbjct: 434 GTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLI 493

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             + K   +++A   L+E+ +    P   TY   +D   +   +  A++   ++   G  
Sbjct: 494 IGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVL 553

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P   I  +L + + + G   +A     F+ +++       +  +I+GL   G + +A  +
Sbjct: 554 PNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGI 613

Query: 560 HGLMEAQGFAASERLKVALISSQT 583
              ++ +G   +     +LIS   
Sbjct: 614 FSELQEKGLLPNAFTYNSLISGSC 637



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 118/269 (43%), Gaps = 1/269 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L E+    N   Y+ LI    K+  ++ A ++L++M   GI PDIVT  +L+    KAG 
Sbjct: 617 LQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGE 676

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           ++RAK  F+ +   G  P+   Y +M+  Y  +  P     L++ M+  G+     IY  
Sbjct: 677 IERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNV 736

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           +L    +      A  +   M  + F  T+ S   L+E Y ++G   +A    + MI   
Sbjct: 737 ILNFCCKEEKFEKALDLFQEMLEKGFASTV-SFNTLIEGYCKSGKLQEANHLLEEMIEKQ 795

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P+     S+I    K  ++ +A  L LE+++    P   TYT L+     +  ++E  
Sbjct: 796 FIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVS 855

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAG 516
            L  ++   G  P       + D Y R G
Sbjct: 856 ALFEEMVAKGIEPDKMTYYVMIDAYCREG 884



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 140/312 (44%), Gaps = 5/312 (1%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E   + N   Y   ID ++K   +E A+R   +M   G++P++   T L+  + K GN+ 
Sbjct: 514 ERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVT 573

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A   F  + S     D + Y+ +I      G+      +   +   G+  +   Y +L+
Sbjct: 574 EAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLI 633

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               + G+V  A Q+   M I+   P + +  +L++   +AG+ ++A++ FD +   G  
Sbjct: 634 SGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLT 693

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           P+    A+M+  Y K      A  LL E+   G  P    Y V++++  + +   +A  L
Sbjct: 694 PNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDL 753

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGL 547
             ++ E G A       +L + Y ++G  ++A   L   E  ++Q  P+   +  +I+  
Sbjct: 754 FQEMLEKGFASTVSFN-TLIEGYCKSGKLQEANHLLE--EMIEKQFIPNHVTYTSLIDHN 810

Query: 548 LAGGFLQDAQRV 559
              G + +A+R+
Sbjct: 811 CKAGMMGEAKRL 822



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 72/346 (20%), Positives = 152/346 (43%), Gaps = 6/346 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E+  + + + YS LI+ H +   +  A  +L +M +  + P ++T +V+++   + GN
Sbjct: 372 MMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGN 431

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L         +  +G +P+  VY +++ A+   G+ +    +++ M   GI      Y +
Sbjct: 432 LQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNS 491

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+  F +   +  A      M     +P   +    ++ Y +AG+ + A   F+ M+  G
Sbjct: 492 LIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCG 551

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P+     ++I  + K+  + +A ++   +          TY+VL+  L R   ++EA 
Sbjct: 552 VLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAF 611

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIIN 545
            +  ++ E G  P      SL     + G   KA Q L   E   + + PD   +  +I+
Sbjct: 612 GIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLE--EMCIKGINPDIVTYNILID 669

Query: 546 GLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQPT 591
           GL   G ++ A+ +   +E +G   +     A++    + + + PT
Sbjct: 670 GLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDG--YCKSKNPT 713



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 150/335 (44%), Gaps = 26/335 (7%)

Query: 218 LQPSRIDWINLL-DRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
            +PS +   +LL D L+    +L++KV + + + +    +V  Y+ +I AH K   ++DA
Sbjct: 185 FRPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVL-PDVYTYTNMISAHCKVGNVKDA 243

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
           +R+L +M E                  KA  LD A E   S+   G  PD   Y+ +I  
Sbjct: 244 KRVLLEMGE------------------KARLLDEAIELKRSMVDKGLVPDLYTYDILING 285

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           +    + +    ++  MI  G++     Y AL+  F + GD+  A +I + M     +  
Sbjct: 286 FCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEAN 345

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           L     L+    +AG  ++A      M+  G +PD +  + +I  + +   + +A  LL 
Sbjct: 346 LIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLD 405

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
           E++K    P   TY+V+++ L R   +     +L ++   G  P   +  +L   +A+ G
Sbjct: 406 EMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEG 465

Query: 517 IEKKALQALGFLEAKKEQ-MGPDDFERIINGLLAG 550
              +  ++   LE  +EQ + PD F    N L+ G
Sbjct: 466 ---RVEESRMILERMREQGILPDVF--CYNSLIIG 495



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 92/184 (50%), Gaps = 7/184 (3%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E+ F + V  ++ LI+ + K   L++A  +L++M E   +P+ VT T L+    KAG + 
Sbjct: 759 EKGFASTV-SFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMG 817

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            AK  +  ++     P  K Y S++  Y N G      +L + M+  GIE  +  Y  ++
Sbjct: 818 EAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMI 877

Query: 370 RSFAQCGDVRGAGQITNIMRIE------EFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
            ++ + G+V  A ++ + + ++       F+  L +C+++   +  AG+ D+A      M
Sbjct: 878 DAYCREGNVMEACKLKDEILVKGMPMKSGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSM 937

Query: 424 IRLG 427
           ++ G
Sbjct: 938 VKFG 941



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 111/248 (44%), Gaps = 7/248 (2%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N   Y+ ++D + K      A ++L++M   G+ PD     V+++   K    ++A + F
Sbjct: 695 NCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLF 754

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + +   GF      +N++I  Y  +G+ +    L++ MI      +   Y +L+    + 
Sbjct: 755 QEMLEKGFASTVS-FNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKA 813

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A ++   M+     PT ++ T L+  Y   G+  +  + F+ M+  G +PD    
Sbjct: 814 GMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTY 873

Query: 436 ASMIAAYGKKNLLDKALNLLLEL------EKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
             MI AY ++  + +A  L  E+       K GF  G  T +V+         ++EA ++
Sbjct: 874 YVMIDAYCREGNVMEACKLKDEILVKGMPMKSGFRLGLPTCSVIARGFQIAGNMDEAAEV 933

Query: 490 LGKISELG 497
           L  + + G
Sbjct: 934 LRSMVKFG 941


>gi|125600636|gb|EAZ40212.1| hypothetical protein OsJ_24656 [Oryza sativa Japonica Group]
          Length = 661

 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 75/337 (22%), Positives = 149/337 (44%), Gaps = 36/337 (10%)

Query: 245 ELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK 304
           E  L+ E  +   R Y+ L+  + K   L++AE++L +M++ G+ PD  T ++LV  Y++
Sbjct: 281 EFFLAGE-IKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTR 339

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
           AG  + A+   + + + G +P   V++ ++  + + G+ +   +++  M  SG+      
Sbjct: 340 AGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHF 399

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
           Y  ++ +F +   +  A    + MR E  +P + +   L++A+ + G  D+A   FD   
Sbjct: 400 YNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFD--- 456

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
                                           E+ +     G  TY ++++ LG  Q   
Sbjct: 457 --------------------------------EMRESNCPLGTTTYNIMINLLGEEQRWE 484

Query: 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERII 544
             E +L ++ E G  P      +L D+Y R+G  K+A+  +  ++A   +  P  +  ++
Sbjct: 485 GVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSPTMYHALV 544

Query: 545 NGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
           N     G    A  V   M A G  AS  +  +LI++
Sbjct: 545 NAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINA 581



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 109/241 (45%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           +S+++         + A  +L++M+ +G+ PD     V++  + K   L  A +AF+ +R
Sbjct: 365 FSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMR 424

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +PD   +N++I A+   G+    + L D M  S        Y  ++    +     
Sbjct: 425 EEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWE 484

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
           G   +   M+ +   P + + T LV+ YG++G   +A    + M   G KP      +++
Sbjct: 485 GVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSPTMYHALV 544

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            AY ++ L D ALN++  +  DG E        L++  G  + I EA  +L  + E G  
Sbjct: 545 NAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLR 604

Query: 500 P 500
           P
Sbjct: 605 P 605



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 110/249 (44%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +ID   K NCL  A     +M E GI PD+VT   L+  + K G  DRA E F+ +R
Sbjct: 400 YNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMR 459

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
                     YN MI       + +   +++  M   G+  +   Y  L+  + + G  +
Sbjct: 460 ESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFK 519

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A      M+ +  +P+      LV AY Q G  D A +    M   G +       S+I
Sbjct: 520 EAVDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLI 579

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            A+G+   + +A ++L  ++++G  P   TYT L+  L R++   +   +  ++   G A
Sbjct: 580 NAFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKALIRVEQFEKVPVIYEEMITSGCA 639

Query: 500 PPFKIQVSL 508
           P  K +  L
Sbjct: 640 PDRKARAML 648



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 112/244 (45%), Gaps = 21/244 (8%)

Query: 203 KEEDPSPLLAEWKELLQP----SRID-WINLLDRLREQNTQLYFKVAELVLSEESFQTNV 257
           +EE   P +  W  L+       R D  I L D +RE N  L                  
Sbjct: 424 REEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPL----------------GT 467

Query: 258 RDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFES 317
             Y+ +I+   +E   E  E +L +M E G+VP+I+T T LV +Y ++G    A +  E+
Sbjct: 468 TTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEA 527

Query: 318 LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
           +++ G +P   +Y++++ AY   G     +++V  M   G+E S  +  +L+ +F +   
Sbjct: 528 MKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAFGEDRR 587

Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
           +  A  +   M+    +P + + T L++A  +    ++    ++ MI  G  PD +  A 
Sbjct: 588 IAEAFSVLQFMKENGLRPDVITYTTLMKALIRVEQFEKVPVIYEEMITSGCAPDRKARAM 647

Query: 438 MIAA 441
           + +A
Sbjct: 648 LRSA 651



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/305 (22%), Positives = 130/305 (42%), Gaps = 4/305 (1%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMN---ENGIVPDIVTSTVLVHMYS 303
           +L E SF  ++  YS L+          +A  + + +    E+ + PD    + L+  ++
Sbjct: 173 LLREHSFLPDLASYSHLLALLLNTRDPPEAALLDRLLGDLRESRLEPDAPLFSDLISAFA 232

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL-VDMMITSGIERSE 362
           +A   D A E   S ++ G  P      ++I +  +A +     +L ++  +   I+   
Sbjct: 233 RARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAEAEALFLEFFLAGEIKPRT 292

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
             Y ALL+ + + G ++ A Q+ + M      P   + +LLV+AY +AG  + AR     
Sbjct: 293 RAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKE 352

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
           M   G KP     + ++A +  +    KA  +L E+   G  P    Y V++D  G+   
Sbjct: 353 MEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNC 412

Query: 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFER 542
           +  A     ++ E G  P      +L D + + G   +A++    +      +G   +  
Sbjct: 413 LGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNI 472

Query: 543 IINGL 547
           +IN L
Sbjct: 473 MINLL 477


>gi|242047602|ref|XP_002461547.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
 gi|241924924|gb|EER98068.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
          Length = 696

 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 145/325 (44%), Gaps = 3/325 (0%)

Query: 244 AELVLSE---ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
           AE VL +   E    N   Y+ LI  +       +A RILK+M+ +G  P++VT ++L+ 
Sbjct: 306 AEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLID 365

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
              K+G    A+E F S+   G +P+   Y S++  Y   G      ++ D+M+ +G+  
Sbjct: 366 CLCKSGLHAEAREIFNSMIQSGQKPNASTYGSLLHGYATEGNLVDMNNVKDLMVQNGMRP 425

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
              ++   + ++ +CG +  A    N M+ + F P + + T +++   + G  D A S F
Sbjct: 426 GRHVFNIEIYAYCKCGRLDEASLTFNKMQQQGFMPDIVAYTTVIDGLCKIGRLDDAMSRF 485

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
             MI  G  PD     ++I  +      +KA  L  E+   G  P   T+  ++D L + 
Sbjct: 486 CQMIDDGLSPDIITFNTLIHGFALHGKWEKAEELFYEMMDRGIPPNVNTFNSMIDKLFKE 545

Query: 481 QLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF 540
             + EA +L   +   G  P      ++   Y  AG   + ++ L  +     +     F
Sbjct: 546 GKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPTAVTF 605

Query: 541 ERIINGLLAGGFLQDAQRVHGLMEA 565
             +++G+++ G   D      L+++
Sbjct: 606 NTLLDGMVSMGLKPDVVTCKTLIDS 630



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 139/314 (44%), Gaps = 4/314 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ +I    KE  +  A  +  KM ++GI P++VT   ++    K   +D+A+   
Sbjct: 251 NVVSYTTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVL 310

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + +      P+   YNS+I  Y+++GQ    + ++  M   G   +   Y  L+    + 
Sbjct: 311 QQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLIDCLCKS 370

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G    A +I N M     +P   +   L+  Y   G+     +  D M++ G +P     
Sbjct: 371 GLHAEAREIFNSMIQSGQKPNASTYGSLLHGYATEGNLVDMNNVKDLMVQNGMRPGRHVF 430

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
              I AY K   LD+A     ++++ GF P    YT ++D L ++  +++A     ++ +
Sbjct: 431 NIEIYAYCKCGRLDEASLTFNKMQQQGFMPDIVAYTTVIDGLCKIGRLDDAMSRFCQMID 490

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP--DDFERIINGLLAGGFL 553
            G +P      +L   +A  G  +KA +   F E     + P  + F  +I+ L   G +
Sbjct: 491 DGLSPDIITFNTLIHGFALHGKWEKAEEL--FYEMMDRGIPPNVNTFNSMIDKLFKEGKV 548

Query: 554 QDAQRVHGLMEAQG 567
            +A+++  LM   G
Sbjct: 549 TEARKLFDLMPRAG 562



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/296 (21%), Positives = 124/296 (41%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV   + +ID   K   ++ AE +L++M +  I+P+  T   L+H Y  +G    A    
Sbjct: 286 NVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRIL 345

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + +   G +P+   Y+ +I     +G       + + MI SG + +   Y +LL  +A  
Sbjct: 346 KEMSRDGQRPNVVTYSMLIDCLCKSGLHAEAREIFNSMIQSGQKPNASTYGSLLHGYATE 405

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G++     + ++M     +P      + + AY + G  D+A   F+ M + G  PD    
Sbjct: 406 GNLVDMNNVKDLMVQNGMRPGRHVFNIEIYAYCKCGRLDEASLTFNKMQQQGFMPDIVAY 465

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I    K   LD A++   ++  DG  P   T+  L+          +AE+L  ++ +
Sbjct: 466 TTVIDGLCKIGRLDDAMSRFCQMIDDGLSPDIITFNTLIHGFALHGKWEKAEELFYEMMD 525

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGG 551
            G  P      S+ D   + G   +A +    +     +     +  +I+G    G
Sbjct: 526 RGIPPNVNTFNSMIDKLFKEGKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFIAG 581



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 66/320 (20%), Positives = 118/320 (36%), Gaps = 61/320 (19%)

Query: 325 PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQI 384
           PD   +  +I    +AG   LG + +  +I +G+      +  LLR+   C + R +  +
Sbjct: 142 PDIATFGILISCCCDAGCLNLGFAALGQIIKTGLRAQAVTFTPLLRTL--CAEKRTSDAM 199

Query: 385 TNIMR--------------------------IEE--------------FQPTLESCTLLV 404
             ++R                           EE                P + S T ++
Sbjct: 200 NIVLRRMPELGCTPDVFSYTTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPNVVSYTTVI 259

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
             + + GD  +A + F  M+  G  P+     S+I    K   +DKA  +L ++  +   
Sbjct: 260 HGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIM 319

Query: 465 PGPATYTVLVD-WLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
           P   TY  L+  +L   Q   EA ++L ++S  G+ P       L D   ++G+  +A +
Sbjct: 320 PNCTTYNSLIHGYLSSGQW-TEAVRILKEMSRDGQRPNVVTYSMLIDCLCKSGLHAEARE 378

Query: 524 ALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG--------------FA 569
               +    ++     +  +++G    G L D   V  LM   G              + 
Sbjct: 379 IFNSMIQSGQKPNASTYGSLLHGYATEGNLVDMNNVKDLMVQNGMRPGRHVFNIEIYAYC 438

Query: 570 ASERLKVALISSQTFNRQRQ 589
              RL  A   S TFN+ +Q
Sbjct: 439 KCGRLDEA---SLTFNKMQQ 455


>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
 gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
          Length = 573

 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 150/315 (47%), Gaps = 3/315 (0%)

Query: 183 EPKPITGKCKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRL-REQNTQLYF 241
           E +P      +I D      + +       + +E + P+   +  +++ L + + T   +
Sbjct: 2   ECQPTVVTWTIIIDGFCKANQLKQALACFEKMREFVAPNERTYNVVVNGLCKARLTSKAY 61

Query: 242 KVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKM-NENGIVPDIVTSTVLVH 300
           +V + +   +S   ++  YS +I+   K+  ++ A  IL++M   +GI PD+VT T +V 
Sbjct: 62  EVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVD 121

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
              + G +DRA E    ++  G +PDK  ++++I  + NA +    + L   ++TS   +
Sbjct: 122 GLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWK 181

Query: 361 SEEI-YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
            + + Y AL+  F + G++  A ++  +M   +  P + + + L+    +AGD DQA   
Sbjct: 182 PDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDL 241

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
           F  M   G  P+     ++I      + +D A  L+ E+      P   +Y  L+D   R
Sbjct: 242 FRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCR 301

Query: 480 LQLINEAEQLLGKIS 494
           L  I EA+QL  +++
Sbjct: 302 LGRIEEAKQLFKEMA 316



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 140/324 (43%), Gaps = 1/324 (0%)

Query: 241 FKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
            K+ + +L+  S++ +V  Y+ LID   K   LE A ++L  M     VP++VT + L+H
Sbjct: 168 LKLYKEILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLH 227

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
              KAG+LD+A + F  + S G  P+   Y ++I     A +      L+D M  +    
Sbjct: 228 GLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPP 287

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
               Y ALL  + + G +  A Q+   M  +   P   + T LV  +  A   ++AR   
Sbjct: 288 DTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLL 347

Query: 421 DYM-IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
           + M    G  PD    + ++A Y +     +A   + E+      P   TY+ L+D L +
Sbjct: 348 ENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCK 407

Query: 480 LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD 539
              ++ A ++L  +      P      S+     R G   +A + L  + A   + G   
Sbjct: 408 AGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVT 467

Query: 540 FERIINGLLAGGFLQDAQRVHGLM 563
           +  ++ G    G ++ A  +  +M
Sbjct: 468 YTTLLEGFSRTGRMEIAYELFEVM 491



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 114/246 (46%), Gaps = 8/246 (3%)

Query: 260 YSKLIDAHAKENCLEDAERILKKM-NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318
           Y+ L+      + LE+A  +L+ M    GI PD+VT +++V  YS+A     A E  + +
Sbjct: 327 YTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEM 386

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
            +    P+   Y+S+I     AG+    M ++  M+   +E S   + +++ +  + GD+
Sbjct: 387 IARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDM 446

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM-------IRLGHKPD 431
             A ++   M     +P + + T L+E + + G  + A   F+ M           +   
Sbjct: 447 DEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRKKAKKSSSAANLVP 506

Query: 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
           ++  +++I    K   +DKA+ ++ EL     EP       +VD L R     EA +L+ 
Sbjct: 507 EQAFSALIRGLCKAREIDKAMAVVEELRSRECEPAEEDCLAIVDGLLRAGRTEEAGKLIN 566

Query: 492 KISELG 497
            IS++G
Sbjct: 567 SISKVG 572



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/179 (21%), Positives = 82/179 (45%), Gaps = 7/179 (3%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N   YS LID   K   ++ A  +LK M    + P + T   ++    + G++D A +  
Sbjct: 394 NAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLL 453

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS-------EEIYLAL 368
            ++ +HG +P    Y +++  +   G+ ++   L ++M     + S       E+ + AL
Sbjct: 454 VAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRKKAKKSSSAANLVPEQAFSAL 513

Query: 369 LRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           +R   +  ++  A  +   +R  E +P  E C  +V+   +AG  ++A    + + ++G
Sbjct: 514 IRGLCKAREIDKAMAVVEELRSRECEPAEEDCLAIVDGLLRAGRTEEAGKLINSISKVG 572


>gi|224713520|gb|ACN62067.1| PPR-816 [Zea mays]
          Length = 816

 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 137/313 (43%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ +ID   KE  +  A  + K+M + GI PD+VT + +VH   KA  +D+A+   
Sbjct: 220 DVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFL 279

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             + + G  PD   YN++I  Y + GQ K  + +   M    I         L+ S  + 
Sbjct: 280 RQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKY 339

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G ++ A  + + M ++   P + S T+++  Y   G        FD M+  G  P     
Sbjct: 340 GKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTF 399

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +I AY    +LDKA+ +  E+   G +P   TY  ++  L R+  +++A +   ++ +
Sbjct: 400 NVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMID 459

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
            G  P       L   +   G   KA + +  +     ++    F  IIN L   G + D
Sbjct: 460 QGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMD 519

Query: 556 AQRVHGLMEAQGF 568
           AQ +  L    G 
Sbjct: 520 AQNIFDLTVNVGL 532



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 125/287 (43%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI  ++     ++A R+ K+M    I+PD+V    L+    K G +  A++ F+++ 
Sbjct: 294 YNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMA 353

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  PD   Y  M+  Y   G       L D+M+  GI      +  L++++A CG + 
Sbjct: 354 MKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLD 413

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  I N MR    +P + +   ++ A  + G  D A   F+ MI  G  PD      +I
Sbjct: 414 KAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLI 473

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             +     L KA  L+ E+  +G       +  +++ L +L  + +A+ +      +G  
Sbjct: 474 QGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLH 533

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
           P   +   L D Y   G  +KAL+    + +   +     +  ++NG
Sbjct: 534 PDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNG 580



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 101/218 (46%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++ LI A+A    L+ A  I  +M ++G+ P +VT   ++    + G +D A E F  + 
Sbjct: 399 FNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMI 458

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  PDK  Y+ +I  +   G       L+  ++ +G+      + +++ +  + G V 
Sbjct: 459 DQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVM 518

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  I ++       P      +L++ Y   G  ++A   FD M+  G +P+     +++
Sbjct: 519 DAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLV 578

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
             Y K   +D+ L+L  E+ + G +P    Y +++D L
Sbjct: 579 NGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGL 616



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/306 (21%), Positives = 130/306 (42%), Gaps = 6/306 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIV--PDIVTSTVLVHMYSKAGNLDRAKE 313
           +V  Y+ L+ +   +     A+ +L+ M E G V  PD+V    ++  + K G++++A +
Sbjct: 183 DVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACD 242

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            F+ +   G  PD   Y+S++ A   A       + +  M+  G+      Y  L+  ++
Sbjct: 243 LFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYS 302

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
             G  + A ++   MR +   P + +   L+ +  + G   +AR  FD M   G  PD  
Sbjct: 303 STGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVF 362

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
               M+  Y  K  L    +L   +  DG  P   T+ VL+       ++++A  +  ++
Sbjct: 363 SYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEM 422

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGG 551
            + G  P     +++     R G    A++   F +   + + PD   +  +I G    G
Sbjct: 423 RDHGVKPHVVTYMTVIAALCRIGKMDDAMEK--FNQMIDQGVVPDKYAYHCLIQGFCTHG 480

Query: 552 FLQDAQ 557
            L  A+
Sbjct: 481 SLLKAK 486



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 106/242 (43%), Gaps = 2/242 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  LI        L  A+ ++ ++  NG+  DIV    +++   K G +  A+  F+   
Sbjct: 469 YHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTV 528

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G  PD  VYN ++  Y   G+ +  + + D M+++GIE +   Y  L+  + + G + 
Sbjct: 529 NVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRID 588

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
               +   M  +  +P+     ++++   +AG    A+  F  M   G    ++CT S++
Sbjct: 589 EGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAM-NKCTYSIV 647

Query: 440 A-AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
                K    D+A+ L  EL     +    T   ++  + + + + EA+ L   IS  G 
Sbjct: 648 LRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGL 707

Query: 499 AP 500
            P
Sbjct: 708 VP 709



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 106/278 (38%), Gaps = 36/278 (12%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+D +     +E A R+   M   GI P++V    LV+ Y K G +D     F  + 
Sbjct: 539 YNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREML 598

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF--AQCGD 377
             G +P   +YN +I     AG+          M  SGI  ++  Y  +LR     +C D
Sbjct: 599 QKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFD 658

Query: 378 --------VRGAGQITNIM-------------RIEE------------FQPTLESCTLLV 404
                   +R      +I+             R+EE              P   + ++++
Sbjct: 659 EAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMI 718

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
               + G  ++A   F  M   G +PD R    ++    KKN + +A   L ++++  F 
Sbjct: 719 TNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFS 778

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLL-GKISELGEAPP 501
               T  +LVD         E  + L  K   L EA P
Sbjct: 779 LEHLTAMLLVDLFSSKGTCREQIRFLPAKYHFLAEASP 816



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 111/276 (40%), Gaps = 14/276 (5%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           VLS  S+      Y+ L+D   + +  E A     ++   G+  D + ++ L+  + +A 
Sbjct: 108 VLSPTSYT-----YAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEA- 161

Query: 307 NLDRAKEAFESLRSH----GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE 362
              R  EA + L       G  PD   YN ++ +  N G+      L+ MM   G   S 
Sbjct: 162 --KRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSP 219

Query: 363 EI--YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
           ++  Y  ++  F + GDV  A  +   M      P L + + +V A  +A   D+A +  
Sbjct: 220 DVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFL 279

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
             M+  G  PD+    ++I  Y       +A+ +  E+ +    P       L+  L + 
Sbjct: 280 RQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKY 339

Query: 481 QLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
             I EA  +   ++  G+ P       + + YA  G
Sbjct: 340 GKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKG 375



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 91/207 (43%), Gaps = 8/207 (3%)

Query: 211 LAEWKELLQ----PSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDA 266
           L+ ++E+LQ    PS I +  ++D L E    +  KV    ++E     N   YS ++  
Sbjct: 591 LSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRG 650

Query: 267 HAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPD 326
             K  C ++A  + K++    +  DI+T   ++    +   ++ AK+ F S+   G  P 
Sbjct: 651 LFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPC 710

Query: 327 KKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITN 386
              Y+ MI   +  G  +    +   M  +G E    +   ++R   +  ++  AG   +
Sbjct: 711 AVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLS 770

Query: 387 IMRIEEFQPTLESCT--LLVEAYGQAG 411
             +I+E   +LE  T  LLV+ +   G
Sbjct: 771 --KIDERNFSLEHLTAMLLVDLFSSKG 795


>gi|255557939|ref|XP_002519998.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540762|gb|EEF42322.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 498

 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 114/241 (47%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +ID   K   L++A  +L  M + GI PDIVT   L+  + KAGNL +A E F  ++
Sbjct: 199 YNSIIDTFGKYGELDEALEVLSNMQQQGITPDIVTWNSLIRWHCKAGNLSKALELFSKMQ 258

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G  PD K+  ++I      G+  +     D+M + G ++S  IY  L+  + Q G  +
Sbjct: 259 AQGLYPDPKILVTIISRLAEQGKWNIIRENFDIMKSWGYKKSGAIYAILVDIYGQYGRFQ 318

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A +  + ++ E   P+     +L  AY Q G  +Q       M   G +P+      +I
Sbjct: 319 DAEECISALKSEGILPSASMFCVLANAYAQQGLCEQTVKVLQLMEAEGIEPNLIMLNVLI 378

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            A+G      +AL++   +++ G  P   TY+ L+    R +  +E  ++  ++   G  
Sbjct: 379 NAFGIAGRHREALSIYHHMKESGISPDVVTYSTLMKAYIRARKFDEVPEIYSEMESSGCT 438

Query: 500 P 500
           P
Sbjct: 439 P 439



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 119/269 (44%), Gaps = 7/269 (2%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           LS ES+ + + D  K+ D       ++ A  +L  M   G  P  ++ T L+      G 
Sbjct: 19  LSGESYNSCICDCCKVGD-------VDKAMTLLADMQSLGFHPSSLSYTCLIETLLSVGR 71

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
              A+  ++ +   G +P  K+YN M+  ++  G  ++   ++ ++   G+ R++E Y  
Sbjct: 72  TLEAEALYQEMMCFGLKPRLKLYNIMLRGFLKKGLLRVAERVLRILDDLGLHRNQETYEI 131

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           LL      G +     + N M+ + FQ      + ++  Y   G   +A    + +  +G
Sbjct: 132 LLDYNVNAGRLEDTWSVINEMKQKGFQLNSFVYSKVIGLYRDNGMWKKAIGIIEEIREMG 191

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
              D     S+I  +GK   LD+AL +L  +++ G  P   T+  L+ W  +   +++A 
Sbjct: 192 MPLDKHIYNSIIDTFGKYGELDEALEVLSNMQQQGITPDIVTWNSLIRWHCKAGNLSKAL 251

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAG 516
           +L  K+   G  P  KI V++    A  G
Sbjct: 252 ELFSKMQAQGLYPDPKILVTIISRLAEQG 280



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 83/406 (20%), Positives = 166/406 (40%), Gaps = 15/406 (3%)

Query: 183 EPKPITGKCKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFK 242
            P  ++  C  + + +LS+ +  +   L  E        R+   N++  LR    +   +
Sbjct: 53  HPSSLSYTC--LIETLLSVGRTLEAEALYQEMMCFGLKPRLKLYNIM--LRGFLKKGLLR 108

Query: 243 VAELVL---SEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLV 299
           VAE VL    +     N   Y  L+D +     LED   ++ +M + G   +    + ++
Sbjct: 109 VAERVLRILDDLGLHRNQETYEILLDYNVNAGRLEDTWSVINEMKQKGFQLNSFVYSKVI 168

Query: 300 HMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
            +Y   G   +A    E +R  G   DK +YNS+I  +   G+    + ++  M   GI 
Sbjct: 169 GLYRDNGMWKKAIGIIEEIREMGMPLDKHIYNSIIDTFGKYGELDEALEVLSNMQQQGIT 228

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
                + +L+R   + G++  A ++ + M+ +   P  +    ++    + G  +  R N
Sbjct: 229 PDIVTWNSLIRWHCKAGNLSKALELFSKMQAQGLYPDPKILVTIISRLAEQGKWNIIREN 288

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
           FD M   G+K      A ++  YG+      A   +  L+ +G  P  + + VL +   +
Sbjct: 289 FDIMKSWGYKKSGAIYAILVDIYGQYGRFQDAEECISALKSEGILPSASMFCVLANAYAQ 348

Query: 480 LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD- 538
             L  +  ++L  +   G  P   +   L + +  AG  ++AL    +   K+  + PD 
Sbjct: 349 QGLCEQTVKVLQLMEAEGIEPNLIMLNVLINAFGIAGRHREALSI--YHHMKESGISPDV 406

Query: 539 -DFERIINGLLAGGFLQDAQRVHGLMEAQGFA----ASERLKVALI 579
             +  ++   +      +   ++  ME+ G      A E L+ AL+
Sbjct: 407 VTYSTLMKAYIRARKFDEVPEIYSEMESSGCTPDKKAREILQAALM 452



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/277 (21%), Positives = 121/277 (43%)

Query: 303 SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE 362
            K G++D+A      ++S GF P    Y  +I   ++ G+     +L   M+  G++   
Sbjct: 32  CKVGDVDKAMTLLADMQSLGFHPSSLSYTCLIETLLSVGRTLEAEALYQEMMCFGLKPRL 91

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
           ++Y  +LR F + G +R A ++  I+         E+  +L++    AG  +   S  + 
Sbjct: 92  KLYNIMLRGFLKKGLLRVAERVLRILDDLGLHRNQETYEILLDYNVNAGRLEDTWSVINE 151

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
           M + G + +    + +I  Y    +  KA+ ++ E+ + G       Y  ++D  G+   
Sbjct: 152 MKQKGFQLNSFVYSKVIGLYRDNGMWKKAIGIIEEIREMGMPLDKHIYNSIIDTFGKYGE 211

Query: 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFER 542
           ++EA ++L  + + G  P      SL   + +AG   KAL+    ++A+     P     
Sbjct: 212 LDEALEVLSNMQQQGITPDIVTWNSLIRWHCKAGNLSKALELFSKMQAQGLYPDPKILVT 271

Query: 543 IINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
           II+ L   G     +    +M++ G+  S  +   L+
Sbjct: 272 IISRLAEQGKWNIIRENFDIMKSWGYKKSGAIYAILV 308



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 110/263 (41%), Gaps = 39/263 (14%)

Query: 355 TSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPD 414
           ++G E S E Y + +    + GDV  A  +   M+   F P+  S T L+E     G   
Sbjct: 14  STGQELSGESYNSCICDCCKVGDVDKAMTLLADMQSLGFHPSSLSYTCLIETLLSVGRTL 73

Query: 415 QARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
           +A + +  M+  G KP  +    M+  + KK LL  A  +L  L+  G      TY +L+
Sbjct: 74  EAEALYQEMMCFGLKPRLKLYNIMLRGFLKKGLLRVAERVLRILDDLGLHRNQETYEILL 133

Query: 475 DW---LGRLQ----LINEAEQ----------------------------LLGKISELGEA 499
           D+    GRL+    +INE +Q                            ++ +I E+G  
Sbjct: 134 DYNVNAGRLEDTWSVINEMKQKGFQLNSFVYSKVIGLYRDNGMWKKAIGIIEEIREMGMP 193

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQ 557
               I  S+ D + + G   +AL+ L  ++  ++ + PD   +  +I      G L  A 
Sbjct: 194 LDKHIYNSIIDTFGKYGELDEALEVLSNMQ--QQGITPDIVTWNSLIRWHCKAGNLSKAL 251

Query: 558 RVHGLMEAQGFAASERLKVALIS 580
            +   M+AQG     ++ V +IS
Sbjct: 252 ELFSKMQAQGLYPDPKILVTIIS 274


>gi|147784915|emb|CAN72973.1| hypothetical protein VITISV_019486 [Vitis vinifera]
          Length = 550

 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 124/268 (46%), Gaps = 4/268 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E     NV  Y+ LI    +E  + +AER++ +M  +G+ P++++   L+  Y   GN
Sbjct: 282 MRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGN 341

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           LD+A   F  ++S G  P    YN +I  +  A        +V  M   G+  S+  Y  
Sbjct: 342 LDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTI 401

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+ +  +  ++  A QI + M        +    +L+      GD  +A   F  +  + 
Sbjct: 402 LMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMH 461

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            KP+D    +MI  Y K+    +AL LL E+ ++G  P  A+Y   +  L + +   EAE
Sbjct: 462 LKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIXILCKDEKWTEAE 521

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARA 515
            LL  + ELG  P     +S+ +M ++A
Sbjct: 522 VLLKDMIELGLKP----SISIWNMISKA 545



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 129/303 (42%), Gaps = 4/303 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E     NV  Y+ LID   K   +E  +++  KM E  +V +  T TVL++ + K G 
Sbjct: 177 MEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGL 236

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
                E +E ++  G  P+   YNSMI    N G+      L D M   G+  +   Y  
Sbjct: 237 KKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNT 296

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    Q   V  A ++   M+ +   P L S   L++ Y   G+ D+A S F+ M   G
Sbjct: 297 LIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSG 356

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P       +IA + +        +++ E+E  G  P   TYT+L+D L R   I +A 
Sbjct: 357 QSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAF 416

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
           Q+   + + G      I   L       G  K+A +   F    +  + P+D   I N +
Sbjct: 417 QIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKL--FKSLDEMHLKPNDV--IYNTM 472

Query: 548 LAG 550
           + G
Sbjct: 473 IYG 475



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 131/328 (39%), Gaps = 13/328 (3%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           +SF T+V  +  +I+AH +    E A     +M   G+VP   T   L+ +  K+   ++
Sbjct: 76  DSFPTHVLIHEAIINAHVRSQLPEQALFYXNQMIGRGLVPGSNTFNNLLILLIKSNFFEK 135

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A   F   + +  + D   +  MI      G    G  ++  M   G+  +  +Y  L+ 
Sbjct: 136 AWRVFNETKGN-VKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLID 194

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
              + GD+    Q+   M   +      + T+L+  + + G        ++ M   G  P
Sbjct: 195 GCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVP 254

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           +     SMI        L+ A  L  E+ + G      TY  L+  L + + + EAE+L+
Sbjct: 255 NVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLM 314

Query: 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAG 550
            ++   G +P      +L D Y   G   KA     F + K     P       N L+AG
Sbjct: 315 CRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSL--FNQMKSSGQSPS--LATYNILIAG 370

Query: 551 GFLQDAQRVHGL------MEAQGFAASE 572
               +A+   G+      MEA+G + S+
Sbjct: 371 --FSEAKNSAGVTDMVREMEARGLSPSK 396



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/320 (18%), Positives = 128/320 (40%), Gaps = 1/320 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++ L+    K N  E A R+  +   N +  D+ +  +++    + G LD+  E    + 
Sbjct: 120 FNNLLILLIKSNFFEKAWRVFNETKGN-VKLDVYSFGIMIKGCCEVGYLDKGFEVLGQME 178

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P+  VY ++I      G  + G  L   M    +  ++  Y  L+  F + G  +
Sbjct: 179 EMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKK 238

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
              ++   M++    P + +   ++      G  + A   FD M   G   +     ++I
Sbjct: 239 DGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLI 298

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
               ++  + +A  L+  +++DG  P   +Y  L+D    +  +++A  L  ++   G++
Sbjct: 299 GGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQS 358

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P       L   ++ A         +  +EA+        +  +++ L+    ++ A ++
Sbjct: 359 PSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQI 418

Query: 560 HGLMEAQGFAASERLKVALI 579
           +  ME  G  A   +   LI
Sbjct: 419 YSSMEKAGLVADIYIYGVLI 438


>gi|15226907|ref|NP_181058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100538|sp|O82178.1|PP186_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g35130
 gi|3668091|gb|AAC61823.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253974|gb|AEC09068.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 591

 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 94/366 (25%), Positives = 164/366 (44%), Gaps = 13/366 (3%)

Query: 199 LSLEKEEDPSPLLAEW---KELLQPSRIDWINLLDRLREQNTQLYFKVAE---LVLSEES 252
           L L K+ D   L+ EW   K   QP  I + NLL     Q  Q  +K AE   + L E  
Sbjct: 129 LRLNKKWDSIILVCEWILRKSSFQPDVICF-NLLIDAYGQKFQ--YKEAESLYVQLLESR 185

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTV----LVHMYSKAGNL 308
           +      Y+ LI A+     +E AE +L +M  + + P  +  TV    +  +  + GN 
Sbjct: 186 YVPTEDTYALLIKAYCMAGLIERAEVVLVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNT 245

Query: 309 DRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLAL 368
           + A + F+ ++    +P  + YN MI  Y  A +  +   L   M +   + +   Y AL
Sbjct: 246 EEAIDVFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTAL 305

Query: 369 LRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH 428
           + +FA+ G    A +I   ++ +  +P +     L+E+Y +AG P  A   F  M  +G 
Sbjct: 306 VNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGC 365

Query: 429 KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQ 488
           +PD      M+ AYG+  L   A  +  E+++ G  P   ++ +L+    + + + + E 
Sbjct: 366 EPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEA 425

Query: 489 LLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLL 548
           ++ ++SE G  P   +  S+ ++Y R G   K  + L  +E          +  +IN   
Sbjct: 426 IVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYG 485

Query: 549 AGGFLQ 554
             GFL+
Sbjct: 486 KAGFLE 491



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 127/279 (45%), Gaps = 2/279 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +I+ + K +    + ++  +M  +   P+I T T LV+ +++ G  ++A+E FE L+
Sbjct: 267 YNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQ 326

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +PD  VYN+++ +Y  AG P     +  +M   G E     Y  ++ ++ + G   
Sbjct: 327 EDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHS 386

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  +   M+     PT++S  LL+ AY +A D  +  +    M   G +PD     SM+
Sbjct: 387 DAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSML 446

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             YG+     K   +L E+E        +TY +L++  G+   +   E+L  ++ E    
Sbjct: 447 NLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELKEKNFR 506

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
           P      S    Y+R  +  K L+   F E       PD
Sbjct: 507 PDVVTWTSRIGAYSRKKLYVKCLEV--FEEMIDSGCAPD 543



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 123/265 (46%), Gaps = 17/265 (6%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  Y+ L++A A+E   E AE I +++ E+G+ PD+     L+  YS+AG    A E F
Sbjct: 298 NICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIF 357

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             ++  G +PD+  YN M+ AY  AG      ++ + M   GI  + + ++ LL ++++ 
Sbjct: 358 SLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKA 417

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR-LGHKPDDRC 434
            DV     I   M     +P       ++  YG+ G        F  M + L    +  C
Sbjct: 418 RDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLG-------QFTKMEKILAEMENGPC 470

Query: 435 TAS------MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQ 488
           TA       +I  YGK   L++   L +EL++  F P   T+T  +    R +L  +  +
Sbjct: 471 TADISTYNILINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRIGAYSRKKLYVKCLE 530

Query: 489 LLGKISELGEAP---PFKIQVSLCD 510
           +  ++ + G AP     K+ +S C 
Sbjct: 531 VFEEMIDSGCAPDGGTAKVLLSACS 555



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 123/284 (43%), Gaps = 16/284 (5%)

Query: 318 LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
           LR   FQPD   +N +I AY    Q K   SL   ++ S    +E+ Y  L++++   G 
Sbjct: 146 LRKSSFQPDVICFNLLIDAYGQKFQYKEAESLYVQLLESRYVPTEDTYALLIKAYCMAGL 205

Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA-----GDPDQARSNFDYMIRLGHKPDD 432
           +  A  +   M+     P     T+   AY +      G+ ++A   F  M R   KP  
Sbjct: 206 IERAEVVLVEMQNHHVSPKTIGVTVY-NAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTT 264

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
                MI  YGK +    +  L  E+     +P   TYT LV+   R  L  +AE++  +
Sbjct: 265 ETYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQ 324

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG--PD--DFERIINGLL 548
           + E G  P   +  +L + Y+RAG    A +    +    + MG  PD   +  +++   
Sbjct: 325 LQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLM----QHMGCEPDRASYNIMVDAYG 380

Query: 549 AGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQPTR 592
             G   DA+ V   M+  G A + +  + L+S+  +++ R  T+
Sbjct: 381 RAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSA--YSKARDVTK 422


>gi|334184699|ref|NP_001189682.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330253975|gb|AEC09069.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 613

 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 94/366 (25%), Positives = 164/366 (44%), Gaps = 13/366 (3%)

Query: 199 LSLEKEEDPSPLLAEW---KELLQPSRIDWINLLDRLREQNTQLYFKVAE---LVLSEES 252
           L L K+ D   L+ EW   K   QP  I + NLL     Q  Q  +K AE   + L E  
Sbjct: 151 LRLNKKWDSIILVCEWILRKSSFQPDVICF-NLLIDAYGQKFQ--YKEAESLYVQLLESR 207

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTV----LVHMYSKAGNL 308
           +      Y+ LI A+     +E AE +L +M  + + P  +  TV    +  +  + GN 
Sbjct: 208 YVPTEDTYALLIKAYCMAGLIERAEVVLVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNT 267

Query: 309 DRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLAL 368
           + A + F+ ++    +P  + YN MI  Y  A +  +   L   M +   + +   Y AL
Sbjct: 268 EEAIDVFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTAL 327

Query: 369 LRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH 428
           + +FA+ G    A +I   ++ +  +P +     L+E+Y +AG P  A   F  M  +G 
Sbjct: 328 VNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGC 387

Query: 429 KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQ 488
           +PD      M+ AYG+  L   A  +  E+++ G  P   ++ +L+    + + + + E 
Sbjct: 388 EPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEA 447

Query: 489 LLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLL 548
           ++ ++SE G  P   +  S+ ++Y R G   K  + L  +E          +  +IN   
Sbjct: 448 IVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYG 507

Query: 549 AGGFLQ 554
             GFL+
Sbjct: 508 KAGFLE 513



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 127/279 (45%), Gaps = 2/279 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +I+ + K +    + ++  +M  +   P+I T T LV+ +++ G  ++A+E FE L+
Sbjct: 289 YNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQ 348

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +PD  VYN+++ +Y  AG P     +  +M   G E     Y  ++ ++ + G   
Sbjct: 349 EDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHS 408

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  +   M+     PT++S  LL+ AY +A D  +  +    M   G +PD     SM+
Sbjct: 409 DAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSML 468

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             YG+     K   +L E+E        +TY +L++  G+   +   E+L  ++ E    
Sbjct: 469 NLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELKEKNFR 528

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
           P      S    Y+R  +  K L+   F E       PD
Sbjct: 529 PDVVTWTSRIGAYSRKKLYVKCLEV--FEEMIDSGCAPD 565



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 123/265 (46%), Gaps = 17/265 (6%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  Y+ L++A A+E   E AE I +++ E+G+ PD+     L+  YS+AG    A E F
Sbjct: 320 NICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIF 379

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             ++  G +PD+  YN M+ AY  AG      ++ + M   GI  + + ++ LL ++++ 
Sbjct: 380 SLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKA 439

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR-LGHKPDDRC 434
            DV     I   M     +P       ++  YG+ G        F  M + L    +  C
Sbjct: 440 RDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLG-------QFTKMEKILAEMENGPC 492

Query: 435 TAS------MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQ 488
           TA       +I  YGK   L++   L +EL++  F P   T+T  +    R +L  +  +
Sbjct: 493 TADISTYNILINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRIGAYSRKKLYVKCLE 552

Query: 489 LLGKISELGEAP---PFKIQVSLCD 510
           +  ++ + G AP     K+ +S C 
Sbjct: 553 VFEEMIDSGCAPDGGTAKVLLSACS 577



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 123/284 (43%), Gaps = 16/284 (5%)

Query: 318 LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
           LR   FQPD   +N +I AY    Q K   SL   ++ S    +E+ Y  L++++   G 
Sbjct: 168 LRKSSFQPDVICFNLLIDAYGQKFQYKEAESLYVQLLESRYVPTEDTYALLIKAYCMAGL 227

Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA-----GDPDQARSNFDYMIRLGHKPDD 432
           +  A  +   M+     P     T+   AY +      G+ ++A   F  M R   KP  
Sbjct: 228 IERAEVVLVEMQNHHVSPKTIGVTVY-NAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTT 286

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
                MI  YGK +    +  L  E+     +P   TYT LV+   R  L  +AE++  +
Sbjct: 287 ETYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQ 346

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG--PD--DFERIINGLL 548
           + E G  P   +  +L + Y+RAG    A +    +    + MG  PD   +  +++   
Sbjct: 347 LQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLM----QHMGCEPDRASYNIMVDAYG 402

Query: 549 AGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQPTR 592
             G   DA+ V   M+  G A + +  + L+S+  +++ R  T+
Sbjct: 403 RAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSA--YSKARDVTK 444


>gi|326501502|dbj|BAK02540.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 673

 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 137/303 (45%), Gaps = 1/303 (0%)

Query: 245 ELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK 304
           E  L+ E  +   R Y+ L+  + K   L++AE +L +M+E G+ PD  T ++LV  Y++
Sbjct: 293 EFFLAGE-IKPRTRAYNALLKGYVKIGSLKNAEHVLDEMSECGVAPDEATYSLLVDAYTR 351

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
           AG  + A+   + + + G +P   V++ ++  + + G  +   +++  M  SG++     
Sbjct: 352 AGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMHASGVQPDRHF 411

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
           Y  ++ +F +   +  A  + N MR E  +P + +   L++A+ + G  D A   F  M 
Sbjct: 412 YNVMIDTFGKYNCLGHAMDVFNRMRGEGIEPDVVTWNTLIDAHCKGGRHDCAMELFKEMR 471

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
                P       MI   G++        ++ E+++ G  P   TYT LVD  GR     
Sbjct: 472 ESNCPPGTTTYNIMINLLGEQERWVGVETMMSEMKEQGLVPNIITYTTLVDVYGRSGRYK 531

Query: 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERII 544
           EA   +  +   G  P   +  +L + YA+ G+   AL  +  + A   +        +I
Sbjct: 532 EAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLI 591

Query: 545 NGL 547
           N  
Sbjct: 592 NAF 594



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 148/340 (43%), Gaps = 3/340 (0%)

Query: 245 ELVLSEESFQTNVRD--YSKLIDAHAKENCLEDAERILKKMNENG-IVPDIVTSTVLVHM 301
           EL+ S ++     R    + LI A      + +AE +  +    G I P       L+  
Sbjct: 254 ELLASAQAIGLTPRSNAVTALISALGIAGRVPEAEALFLEFFLAGEIKPRTRAYNALLKG 313

Query: 302 YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS 361
           Y K G+L  A+   + +   G  PD+  Y+ ++ AY  AG+ +    L+  M   G++ S
Sbjct: 314 YVKIGSLKNAEHVLDEMSECGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPS 373

Query: 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421
             ++  +L  F   GD + A  +   M     QP      ++++ +G+      A   F+
Sbjct: 374 SYVFSRILAGFRDRGDWQKAFAVLREMHASGVQPDRHFYNVMIDTFGKYNCLGHAMDVFN 433

Query: 422 YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ 481
            M   G +PD     ++I A+ K    D A+ L  E+ +    PG  TY ++++ LG  +
Sbjct: 434 RMRGEGIEPDVVTWNTLIDAHCKGGRHDCAMELFKEMRESNCPPGTTTYNIMINLLGEQE 493

Query: 482 LINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFE 541
                E ++ ++ E G  P      +L D+Y R+G  K+A+  +  ++A   +  P  + 
Sbjct: 494 RWVGVETMMSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYH 553

Query: 542 RIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
            ++N     G    A  V   M A G  AS  +  +LI++
Sbjct: 554 ALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINA 593



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 123/288 (42%), Gaps = 15/288 (5%)

Query: 222 RIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILK 281
           R DW      LRE +                 Q +   Y+ +ID   K NCL  A  +  
Sbjct: 387 RGDWQKAFAVLREMHAS-------------GVQPDRHFYNVMIDTFGKYNCLGHAMDVFN 433

Query: 282 KMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAG 341
           +M   GI PD+VT   L+  + K G  D A E F+ +R     P    YN MI   +   
Sbjct: 434 RMRGEGIEPDVVTWNTLIDAHCKGGRHDCAMELFKEMRESNCPPGTTTYNIMI-NLLGEQ 492

Query: 342 QPKLGM-SLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
           +  +G+ +++  M   G+  +   Y  L+  + + G  + A      M+ +  +P+    
Sbjct: 493 ERWVGVETMMSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMY 552

Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
             LV AY Q G  D A +    M   G +       S+I A+G+   + +A ++L  +++
Sbjct: 553 HALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAFGEDRRVVEAFSVLQFMKE 612

Query: 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSL 508
           + F P   TYT L+  L R++  ++   +  ++   G AP  K +  L
Sbjct: 613 NDFRPDVITYTTLMKALIRVEQFDKVPVIYEEMITSGCAPDRKARAML 660



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 131/305 (42%), Gaps = 4/305 (1%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDA---ERILKKMNENGIVPDIVTSTVLVHMYS 303
           ++ E +F  ++  YS L+ +        DA   ER+L  + ++ + PD    + L+  ++
Sbjct: 185 LIREHNFLPDLASYSHLLASLLNTRDPPDAAILERLLGDLRDSRLEPDAPLFSDLISAFA 244

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ-PKLGMSLVDMMITSGIERSE 362
           +A   D A E   S ++ G  P      ++I A   AG+ P+     ++  +   I+   
Sbjct: 245 RAALPDAALELLASAQAIGLTPRSNAVTALISALGIAGRVPEAEALFLEFFLAGEIKPRT 304

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
             Y ALL+ + + G ++ A  + + M      P   + +LLV+AY +AG  + AR     
Sbjct: 305 RAYNALLKGYVKIGSLKNAEHVLDEMSECGVAPDEATYSLLVDAYTRAGRWESARILLKE 364

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
           M   G KP     + ++A +  +    KA  +L E+   G +P    Y V++D  G+   
Sbjct: 365 MEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMHASGVQPDRHFYNVMIDTFGKYNC 424

Query: 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFER 542
           +  A  +  ++   G  P      +L D + + G    A++    +       G   +  
Sbjct: 425 LGHAMDVFNRMRGEGIEPDVVTWNTLIDAHCKGGRHDCAMELFKEMRESNCPPGTTTYNI 484

Query: 543 IINGL 547
           +IN L
Sbjct: 485 MINLL 489



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 110/230 (47%), Gaps = 8/230 (3%)

Query: 216 ELLQPSRIDWINLLDRL----REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKEN 271
           E ++P  + W  L+D      R       FK     + E +       Y+ +I+   ++ 
Sbjct: 438 EGIEPDVVTWNTLIDAHCKGGRHDCAMELFKE----MRESNCPPGTTTYNIMINLLGEQE 493

Query: 272 CLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYN 331
                E ++ +M E G+VP+I+T T LV +Y ++G    A +  E++++ G +P   +Y+
Sbjct: 494 RWVGVETMMSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYH 553

Query: 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391
           +++ AY   G     +++V  M   G+E S  +  +L+ +F +   V  A  +   M+  
Sbjct: 554 ALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAFGEDRRVVEAFSVLQFMKEN 613

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441
           +F+P + + T L++A  +    D+    ++ MI  G  PD +  A + +A
Sbjct: 614 DFRPDVITYTTLMKALIRVEQFDKVPVIYEEMITSGCAPDRKARAMLRSA 663



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 105/236 (44%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           +S+++         + A  +L++M+ +G+ PD     V++  + K   L  A + F  +R
Sbjct: 377 FSRILAGFRDRGDWQKAFAVLREMHASGVQPDRHFYNVMIDTFGKYNCLGHAMDVFNRMR 436

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +PD   +N++I A+   G+    M L   M  S        Y  ++    +     
Sbjct: 437 GEGIEPDVVTWNTLIDAHCKGGRHDCAMELFKEMRESNCPPGTTTYNIMINLLGEQERWV 496

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
           G   + + M+ +   P + + T LV+ YG++G   +A    + M   G KP      +++
Sbjct: 497 GVETMMSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALV 556

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            AY ++ L D ALN++  +  DG E        L++  G  + + EA  +L  + E
Sbjct: 557 NAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAFGEDRRVVEAFSVLQFMKE 612


>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 129/281 (45%), Gaps = 2/281 (0%)

Query: 245 ELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK 304
           E+V++    + N   Y+ L+ AHAKE  +E++  IL++M E GI+PD+     L+  + K
Sbjct: 450 EMVMN--GLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCK 507

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
           A  ++ A+     +     +P+   Y + I  Y  AG+ ++     + M++ G+  +  I
Sbjct: 508 AKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGI 567

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
           Y AL+    + G+V  A  +   +        +++ ++L+    + G   +A   F  + 
Sbjct: 568 YTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQ 627

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
             G  P+     S+I+   K+  +DKA  LL E+   G  P   TY +L+D L +   I 
Sbjct: 628 EKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIE 687

Query: 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
            A+ L   I   G  P      ++ D Y ++     A Q L
Sbjct: 688 RAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLL 728



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 69/324 (21%), Positives = 142/324 (43%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LID   ++  +E A RI  +M   GI  +++    L++   KAG +++A E  + + 
Sbjct: 323 YNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMM 382

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +PD + Y+ +I  +           L+D M    +  +   Y  ++    +CG+++
Sbjct: 383 EKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQ 442

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
           G   I   M +   +P     T L+ A+ + G  +++R   + M   G  PD  C  S+I
Sbjct: 443 GTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLI 502

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             + K   +++A   L+E+ +    P   TY   +D   +   +  A++   ++   G  
Sbjct: 503 IGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVL 562

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P   I  +L + + + G   +A     F+ +++       +  +I+GL   G + +A  +
Sbjct: 563 PNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGI 622

Query: 560 HGLMEAQGFAASERLKVALISSQT 583
              ++ +G   +     +LIS   
Sbjct: 623 FSELQEKGLLPNAFTYNSLISGSC 646



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 159/335 (47%), Gaps = 8/335 (2%)

Query: 218 LQPSRIDWINLL-DRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
            +PS +   +LL D L+    +L++KV + + + +    +V  Y+ +I AH K   ++DA
Sbjct: 176 FRPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVL-PDVYTYTNMISAHCKVGNVKDA 234

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
           +R+L +M E G  P++VT  V++    +A  LD A E   S+   G  PD   Y+ +I  
Sbjct: 235 KRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILING 294

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           +    + +    ++  MI  G++     Y AL+  F + GD+  A +I + M     +  
Sbjct: 295 FCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEAN 354

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           L     L+    +AG  ++A      M+  G +PD +  + +I  + +   + +A  LL 
Sbjct: 355 LIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLD 414

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
           E++K    P   TY+V+++ L R   +     +L ++   G  P   +  +L   +A+ G
Sbjct: 415 EMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEG 474

Query: 517 IEKKALQALGFLEAKKEQ-MGPDDFERIINGLLAG 550
              +  ++   LE  +EQ + PD F    N L+ G
Sbjct: 475 ---RVEESRMILERMREQGILPDVF--CYNSLIIG 504



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 118/269 (43%), Gaps = 1/269 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L E+    N   Y+ LI    K+  ++ A ++L++M   GI PDIVT  +L+    KAG 
Sbjct: 626 LQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGE 685

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           ++RAK  F+ +   G  P+   Y +M+  Y  +  P     L++ M+  G+     IY  
Sbjct: 686 IERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNV 745

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           +L    +      A  +   M  + F  T+ S   L+E Y ++G   +A    + MI   
Sbjct: 746 ILNFCCKEEKFEKALDLFQEMLEKGFASTV-SFNTLIEGYCKSGKLQEANHLLEEMIEKQ 804

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P+     S+I    K  ++ +A  L LE+++    P   TYT L+     +  ++E  
Sbjct: 805 FIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVS 864

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAG 516
            L  ++   G  P       + D Y R G
Sbjct: 865 ALFEEMVAKGIEPDKMTYYVMIDAYCREG 893



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 140/312 (44%), Gaps = 5/312 (1%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E   + N   Y   ID ++K   +E A+R   +M   G++P++   T L+  + K GN+ 
Sbjct: 523 ERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVT 582

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A   F  + S     D + Y+ +I      G+      +   +   G+  +   Y +L+
Sbjct: 583 EAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLI 642

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               + G+V  A Q+   M I+   P + +  +L++   +AG+ ++A++ FD +   G  
Sbjct: 643 SGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLT 702

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           P+    A+M+  Y K      A  LL E+   G  P    Y V++++  + +   +A  L
Sbjct: 703 PNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDL 762

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGL 547
             ++ E G A       +L + Y ++G  ++A   L   E  ++Q  P+   +  +I+  
Sbjct: 763 FQEMLEKGFASTVSFN-TLIEGYCKSGKLQEANHLLE--EMIEKQFIPNHVTYTSLIDHN 819

Query: 548 LAGGFLQDAQRV 559
              G + +A+R+
Sbjct: 820 CKAGMMGEAKRL 831



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 72/346 (20%), Positives = 152/346 (43%), Gaps = 6/346 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E+  + + + YS LI+ H +   +  A  +L +M +  + P ++T +V+++   + GN
Sbjct: 381 MMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGN 440

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L         +  +G +P+  VY +++ A+   G+ +    +++ M   GI      Y +
Sbjct: 441 LQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNS 500

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+  F +   +  A      M     +P   +    ++ Y +AG+ + A   F+ M+  G
Sbjct: 501 LIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCG 560

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P+     ++I  + K+  + +A ++   +          TY+VL+  L R   ++EA 
Sbjct: 561 VLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAF 620

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIIN 545
            +  ++ E G  P      SL     + G   KA Q L   E   + + PD   +  +I+
Sbjct: 621 GIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLE--EMCIKGINPDIVTYNILID 678

Query: 546 GLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQPT 591
           GL   G ++ A+ +   +E +G   +     A++    + + + PT
Sbjct: 679 GLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDG--YCKSKNPT 722



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 85/178 (47%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E+ F  N   Y+ LID + K   + +A+R+  +M E  ++P   T T L+H Y   GN+ 
Sbjct: 802 EKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMS 861

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
                FE + + G +PDK  Y  MI AY   G       L D ++  G+  S   Y AL+
Sbjct: 862 EVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMSVAAYDALI 921

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++  +  +     ++ N +    F+  L +C+++   +  AG+ D+A      M++ G
Sbjct: 922 QALCKKEEFFEVLKLLNEIGESGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSMVKFG 979



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 117/260 (45%), Gaps = 5/260 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N   Y+ ++D + K      A ++L++M   G+ PD     V+++   K    ++A + F
Sbjct: 704 NCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLF 763

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + +   GF      +N++I  Y  +G+ +    L++ MI      +   Y +L+    + 
Sbjct: 764 QEMLEKGFASTVS-FNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKA 822

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A ++   M+     PT ++ T L+  Y   G+  +  + F+ M+  G +PD    
Sbjct: 823 GMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTY 882

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             MI AY ++  + +A  L  E+   G     A Y  L+  L + +   E  +LL +I E
Sbjct: 883 YVMIDAYCREGNVMEACKLKDEILVKGMPMSVAAYDALIQALCKKEEFFEVLKLLNEIGE 942

Query: 496 LGEAPPFKIQVSLCDMYARA 515
            G    F++ +  C + AR 
Sbjct: 943 SG----FRLGLPTCSVIARG 958



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 70/328 (21%), Positives = 125/328 (38%), Gaps = 35/328 (10%)

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL 349
           P+ V   +L+  Y K G L  A   F   ++  F+P     NS++   +   + +L   +
Sbjct: 143 PNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKV 202

Query: 350 VDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409
            D M    +      Y  ++ +  + G+V+ A ++   M  +   P L +  +++    +
Sbjct: 203 FDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCR 262

Query: 410 AGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPAT 469
           A   D+A      M+  G  PD      +I  +  +    +A  +LLE+   G +P P T
Sbjct: 263 ARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPIT 322

Query: 470 YTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL------- 522
           Y  L+D   R   I +A ++  ++   G      I  +L +   +AG  +KAL       
Sbjct: 323 YNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMM 382

Query: 523 --------QALGFL------------------EAKKEQMGPD--DFERIINGLLAGGFLQ 554
                   Q    L                  E KK ++ P    +  IINGL   G LQ
Sbjct: 383 EKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQ 442

Query: 555 DAQRVHGLMEAQGFAASERLKVALISSQ 582
               +   M   G   +  +   L+++ 
Sbjct: 443 GTNAILREMVMNGLKPNAVVYTTLMTAH 470


>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
 gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
          Length = 724

 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 121/261 (46%), Gaps = 5/261 (1%)

Query: 244 AELVLSE---ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
           A L+L E   + F  N   Y+ LI A  K   + +A  +  +M+  G  PDI T   L+ 
Sbjct: 436 AGLILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIF 495

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
              +   ++ A   +  +   G   +   +N++I A++  G+ +  + LV+ M+  G   
Sbjct: 496 GLCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPL 555

Query: 361 SEEIYLALLRSFAQCGDV-RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
            E  Y  L+++  + G V +G G    ++R +   P++ +C +L+  +  AG    A   
Sbjct: 556 DEITYNGLIKALCKTGAVEKGLGLFEEMIR-KGLTPSIITCNILINGFCTAGKVHNALEF 614

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
              MI  G  PD     S+I    K+  + +ALNL  +L+ +G +P   TY  L+ WL R
Sbjct: 615 MRDMIHRGFSPDIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQPDSITYNTLICWLCR 674

Query: 480 LQLINEAEQLLGKISELGEAP 500
               ++A  LL +  E G  P
Sbjct: 675 EGAFDDACFLLYRGVENGFVP 695



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 70/316 (22%), Positives = 136/316 (43%), Gaps = 7/316 (2%)

Query: 256 NVRDYSKLIDAHAKENCLEDAER-ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA 314
           NV  ++ L++   +   L +A   +  KM  NG VPD+ T + LV+   K G    A E 
Sbjct: 345 NVVHFNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALEL 404

Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
              + + G +P+   Y  +I  +   GQ +    ++  M+T G   +   Y AL+ +  +
Sbjct: 405 VNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCK 464

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
            G +  A  +   M  +  +P + +   L+    +  + + A + +  M+  G   +   
Sbjct: 465 HGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVT 524

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
             ++I A+ ++  + +AL L+ ++   G      TY  L+  L +   + +   L  ++ 
Sbjct: 525 FNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMI 584

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFL-EAKKEQMGPD--DFERIINGLLAGG 551
             G  P       L + +  AG   K   AL F+ +       PD   +  +INGL   G
Sbjct: 585 RKGLTPSIITCNILINGFCTAG---KVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRG 641

Query: 552 FLQDAQRVHGLMEAQG 567
            +Q+A  +   ++A+G
Sbjct: 642 RIQEALNLFEKLQAEG 657



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 69/324 (21%), Positives = 135/324 (41%), Gaps = 12/324 (3%)

Query: 249 SEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNL 308
           +++ +  +   Y  LID        +  +R+L +M E GIV       +++  Y +AG  
Sbjct: 96  AQKGYCHSFSVYYLLIDKLGAAAGFKVIDRLLLQMKEEGIVFRESLFILIMKYYGRAGLP 155

Query: 309 DRAKEAFESLRS-HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            +A      ++  +  +P  + YN ++   V    P +  ++   M++ G+  ++  +  
Sbjct: 156 GQATRLLLDMKGVYCCEPSFRSYNVVLDVLVVGNCPSVASNVFYDMLSKGVSPNDYTFGL 215

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++++     +V  A  +   M      P       L++A  +    D+A    + M  +G
Sbjct: 216 VMKALCMVNEVDNACLLLRDMTKHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEMFLMG 275

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD     ++I  + + N + +   L+  +   GF P   TY  L+  L +   I+EA+
Sbjct: 276 CPPDVNTFNTVIYGFCRLNRVLEGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCRIDEAQ 335

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG--PD--DFERI 543
            LL K+      P      +L + + R G   +  +A  F+  K    G  PD   F  +
Sbjct: 336 ALLSKVP----GPNVVHFNTLVNGFVRNG---RLNEATAFVYDKMINNGYVPDVFTFSTL 388

Query: 544 INGLLAGGFLQDAQRVHGLMEAQG 567
           +NGL   G    A  +   M+A+G
Sbjct: 389 VNGLCKKGLFGSALELVNDMDAKG 412


>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
 gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 89/389 (22%), Positives = 161/389 (41%), Gaps = 17/389 (4%)

Query: 187 ITGKCKL--ITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRL---REQNTQLYF 241
           I G CK+   T+ +  L+K E+            +P  + +  ++D L   R  N  +YF
Sbjct: 183 IKGLCKIGHTTNALQLLKKMEEKG---------CKPDVVAYNTVIDSLCKDRRANEAMYF 233

Query: 242 KVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM 301
             +E+V  ++    NV  YS ++        L +A  + K+M    ++P+ VT T+LV  
Sbjct: 234 -FSEMV--DQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDG 290

Query: 302 YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS 361
             K G +  A+  FE +  +G +PD   Y++++  Y    Q      L D+M+  G   S
Sbjct: 291 LCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPS 350

Query: 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421
             +Y  L+    +   +  A  + + M   +  P   + + L++ + QAG P  A+  F 
Sbjct: 351 VRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFK 410

Query: 422 YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ 481
            M   G  PD    + ++    K   LD+A  LL  +++   EP    Y +L+  +    
Sbjct: 411 EMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQGMCNFG 470

Query: 482 LINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFE 541
            +  A +L   +   G  P       +     + G+  +A +    +           + 
Sbjct: 471 KLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGCLPNSCTYN 530

Query: 542 RIINGLLAGGFLQDAQRVHGLMEAQGFAA 570
             I G L  G   +A R+   M  +GF+A
Sbjct: 531 VAIQGFLRNGDPSNAVRLIEEMVGRGFSA 559



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 85/375 (22%), Positives = 156/375 (41%), Gaps = 16/375 (4%)

Query: 214 WKELLQPSRIDWINLLDRLREQNTQLYFKVAELV-----LSEESFQTNVRDYSKLIDAHA 268
           +K  LQP+ + +  LL+ L  +      K+ + V     + +  F  ++  Y+ +I    
Sbjct: 133 FKLGLQPTHVTFGTLLNGLCSKA-----KIIDAVKLFDEIGKMGFAPSLITYTTIIKGLC 187

Query: 269 KENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKK 328
           K     +A ++LKKM E G  PD+V    ++    K    + A   F  +   G  P+  
Sbjct: 188 KIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVV 247

Query: 329 VYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIM 388
            Y+S++  + N GQ     SL   MI   +  +   +  L+    + G +  A ++  +M
Sbjct: 248 TYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMM 307

Query: 389 RIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLL 448
                +P   + + L++ Y      D+A+  FD M+  G  P  R    +I  + K   L
Sbjct: 308 TENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRL 367

Query: 449 DKALNLLLELEKDGFEPGPATYTVLVDWL---GRLQLINEAEQLLGKISELGEAPPFKIQ 505
           ++A  LL E+      P   TY+ L+      GR Q+   A++L  ++   G  P     
Sbjct: 368 NEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQV---AQKLFKEMCSYGLLPDSITY 424

Query: 506 VSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEA 565
             L D   + G   +A + L  ++  K +     +  +I G+   G L+ A+ +   +  
Sbjct: 425 SILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQGMCNFGKLEAARELFSNLFV 484

Query: 566 QGFAASERLKVALIS 580
           +G   S      +IS
Sbjct: 485 KGIQPSVVTYTVMIS 499



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 113/231 (48%), Gaps = 2/231 (0%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++  + F  +VR Y+ LI+ H K   L +A+ +L +M +  + PD VT + L+  + +AG
Sbjct: 341 IMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAG 400

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
               A++ F+ + S+G  PD   Y+ ++      G       L+  M  S IE    IY 
Sbjct: 401 RPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYN 460

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L++     G +  A ++ + + ++  QP++ + T+++    + G  ++A   F  M+  
Sbjct: 461 ILIQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVN 520

Query: 427 GHKPDDRCTASM-IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476
           G  P+  CT ++ I  + +      A+ L+ E+   GF    +T+ +L+D 
Sbjct: 521 GCLPNS-CTYNVAIQGFLRNGDPSNAVRLIEEMVGRGFSADSSTFQMLLDL 570



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/331 (19%), Positives = 137/331 (41%), Gaps = 39/331 (11%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++KL+ +  K+        + K+M+ + I P++ T T+L++    + N D    AF +L 
Sbjct: 72  FNKLLGSLVKKKHYSTVISLCKQMDLSNIRPNVYTLTILINCLCHS-NRDHVHFAFSALG 130

Query: 320 SH---GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
                G QP    + +++    +  +    + L D +   G   S   Y  +++   + G
Sbjct: 131 KMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCKIG 190

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
               A Q+   M  +  +P + +   ++++  +    ++A   F  M+  G  P+    +
Sbjct: 191 HTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYS 250

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
           S++  +     L++A +L  ++      P   T+T+LVD L +  +I EA ++   ++E 
Sbjct: 251 SILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTEN 310

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDA 556
           G  P         D Y                           +  +++G      + +A
Sbjct: 311 GVEP---------DAYT--------------------------YSALMDGYCLQSQMDEA 335

Query: 557 QRVHGLMEAQGFAASERLKVALISSQTFNRQ 587
           Q++  +M  +GFA S R+   LI+    +R+
Sbjct: 336 QKLFDIMVGKGFAPSVRVYNILINGHCKSRR 366



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 75/384 (19%), Positives = 154/384 (40%), Gaps = 46/384 (11%)

Query: 193 LITDKIL-SLEKEEDPSPLLAEWKEL----LQPSRIDWINLLDRLREQN-TQLYFKVAEL 246
           ++ +K+L SL K++  S +++  K++    ++P+      L++ L   N   ++F  + L
Sbjct: 70  VVFNKLLGSLVKKKHYSTVISLCKQMDLSNIRPNVYTLTILINCLCHSNRDHVHFAFSAL 129

Query: 247 -VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKA 305
             + +   Q     +  L++    +  + DA ++  ++ + G  P ++T T ++    K 
Sbjct: 130 GKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCKI 189

Query: 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
           G+   A +  + +   G +PD   YN++I +     +    M     M+  GI  +   Y
Sbjct: 190 GHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTY 249

Query: 366 LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
            ++L  F   G +  A  +   M      P   + T+LV+   + G   +AR  F+ M  
Sbjct: 250 SSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMM-- 307

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
                                             ++G EP   TY+ L+D       ++E
Sbjct: 308 ---------------------------------TENGVEPDAYTYSALMDGYCLQSQMDE 334

Query: 486 AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERI 543
           A++L   +   G AP  ++   L + + ++    +A   L   E     + PD   +  +
Sbjct: 335 AQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLS--EMYDRDLTPDTVTYSTL 392

Query: 544 INGLLAGGFLQDAQRVHGLMEAQG 567
           + G    G  Q AQ++   M + G
Sbjct: 393 MQGFCQAGRPQVAQKLFKEMCSYG 416


>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
 gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 142/313 (45%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  YS +I+ +     L+   +++++M   G+ P++ T   ++ +  K+G +D A+   
Sbjct: 9   DVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERVL 68

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             + + G  PD  VY ++I  +   G  +    L D M    I      Y A++    +C
Sbjct: 69  REMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRC 128

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A ++ N M     +P   + T L++ Y ++G+ ++A S  + M++ G  P+    
Sbjct: 129 GKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTY 188

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++     K   +D A  LL E+   G +    TY  LV+ L +   I +A +L+ ++  
Sbjct: 189 TALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEV 248

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
            G  P      +L D Y + G   KA + L  +  +  Q     F  ++NG    G L+D
Sbjct: 249 AGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLED 308

Query: 556 AQRVHGLMEAQGF 568
            +R+   M  +G 
Sbjct: 309 GERLLAWMLEKGI 321



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 145/328 (44%), Gaps = 3/328 (0%)

Query: 244 AELVLSEESFQTNVRD---YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
           AE VL E   Q  V D   Y+ LID   K   ++ A ++  +M +  IVPD +  T ++ 
Sbjct: 64  AERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVIC 123

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
              + G +  A + F  + S G +PD+  Y ++I  Y  +G+ +   SL + M+ SG+  
Sbjct: 124 GLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTP 183

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
           +   Y AL     + G V  A ++ + M  +  Q  + +   LV    ++G+  QA    
Sbjct: 184 NVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLM 243

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
           + M   G  PD     +++ AY K   + KA  LL E+   G +P   T+ VL++     
Sbjct: 244 EEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMS 303

Query: 481 QLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF 540
            ++ + E+LL  + E G  P      SL   Y      +   +    + A+      + +
Sbjct: 304 GMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTY 363

Query: 541 ERIINGLLAGGFLQDAQRVHGLMEAQGF 568
             +I G      +++A  +H  M  +GF
Sbjct: 364 NILIKGHCKARNMKEAWFLHKEMAEKGF 391



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/281 (20%), Positives = 113/281 (40%), Gaps = 35/281 (12%)

Query: 287 GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLG 346
           G  PD+V+ + +++ Y   G L +  +  + ++  G +P+   YNS+I+    +G+    
Sbjct: 5   GDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDA 64

Query: 347 MSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA 406
             ++  MI  GI     +Y  L+  F + G+++ A ++ + M  +   P   + T ++  
Sbjct: 65  ERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICG 124

Query: 407 YGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG 466
             + G   +A   F+ M   G +PD+                                  
Sbjct: 125 LCRCGKMMEADKVFNKMFSRGVEPDE---------------------------------- 150

Query: 467 PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALG 526
             TYT L+D   +   + +A  L  ++ + G  P      +L D   + G    A + L 
Sbjct: 151 -VTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLH 209

Query: 527 FLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
            +  K  Q+    +  ++NGL   G ++ A ++   ME  G
Sbjct: 210 EMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAG 250



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/299 (20%), Positives = 119/299 (39%), Gaps = 35/299 (11%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LID + K   +E A  +  +M ++G+ P++VT T L     K G +D A E    + 
Sbjct: 153 YTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMC 212

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G Q +   YNS++     +G  +  + L++ M  +G+      +  L+ ++ + G++ 
Sbjct: 213 GKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMV 272

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++   M     QPT+ +  +L+  +  +G  +       +M+  G  P+     S++
Sbjct: 273 KAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLM 332

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD-----------WLGRLQL------ 482
             Y  +N +     +   +   G  P   TY +L+            W    ++      
Sbjct: 333 KQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMAEKGFN 392

Query: 483 ------------------INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
                             I+EA +L  ++   G A   +I     D+    G  + AL+
Sbjct: 393 LTASSYNSIIKGFFKKKKISEARELFEEMRREGMAADAEIYNLFVDISYGEGNMETALE 451



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 16/131 (12%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEE--------SFQTNVRDYSKLIDAHAK 269
           + P  I +  L+D         Y K  E+V + E          Q  V  ++ L++    
Sbjct: 251 MYPDTITFTTLMDA--------YCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCM 302

Query: 270 ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKV 329
              LED ER+L  M E GI+P+  T   L+  Y    N+    E ++ + + G  PD   
Sbjct: 303 SGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNT 362

Query: 330 YNSMIMAYVNA 340
           YN +I  +  A
Sbjct: 363 YNILIKGHCKA 373



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 44/205 (21%), Positives = 91/205 (44%), Gaps = 2/205 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++ L+DA+ K   +  A  +L++M + G+ P ++T  VL++ +  +G L+  +     + 
Sbjct: 258 FTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWML 317

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P+   YNS++  Y      +    +   M   G+      Y  L++   +  +++
Sbjct: 318 EKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMK 377

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  +   M  + F  T  S   +++ + +     +AR  F+ M R G   D       +
Sbjct: 378 EAWFLHKEMAEKGFNLTASSYNSIIKGFFKKKKISEARELFEEMRREGMAADAEIYNLFV 437

Query: 440 -AAYGKKNLLDKALNLLLELEKDGF 463
             +YG+ N ++ AL L  E  ++ F
Sbjct: 438 DISYGEGN-METALELCDEAIENCF 461


>gi|225432035|ref|XP_002273694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Vitis vinifera]
          Length = 666

 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/319 (22%), Positives = 141/319 (44%), Gaps = 6/319 (1%)

Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311
           SF  +V  Y+ LI+   KE   E+A ++L +M   GI P++++ T +++  S AGN++ +
Sbjct: 241 SFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELS 300

Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
                 + + G  P+   + S+I  +   G     +   D MI  G+  +   Y AL+  
Sbjct: 301 LAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHG 360

Query: 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
                 +  A  + N M I    P + + + L++ Y +AGD D A   +++MI  G  P+
Sbjct: 361 LCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPN 420

Query: 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
                 M+    + ++ ++A  L+  ++ +   P   T+   +  L     ++ A ++  
Sbjct: 421 VVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFD 480

Query: 492 KISELGEAPPFKIQVSLCDMYARAGIEKKALQALGF---LEAKKEQMGPDDFERIINGLL 548
           ++   G  P       L D   +   +++  +A G    +E +  ++    +  II G  
Sbjct: 481 QMGNSGCFPNTTTYNELLDSLLK---DRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYC 537

Query: 549 AGGFLQDAQRVHGLMEAQG 567
             G L +A  + G M  +G
Sbjct: 538 CAGMLGEALELLGKMVVRG 556



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/331 (21%), Positives = 133/331 (40%), Gaps = 2/331 (0%)

Query: 218 LQPSRIDWINLLDRLREQ-NTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           + P+ I +  +++ L +  N +L   V   + +      N+  ++ LI     +    +A
Sbjct: 277 IDPNVISYTTIINALSDAGNVELSLAVLAKMFARGC-SPNLHTFTSLIKGFFLKGGSHEA 335

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
                +M   G+VP++V    L+H      +L  A   F  +  +G  P+ + Y+++I  
Sbjct: 336 LDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDG 395

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           Y  AG       + + MIT G   +   Y  ++    +      A  +   M++E   P 
Sbjct: 396 YAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPN 455

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
             +    ++    +G  D A   FD M   G  P+      ++ +  K     +A  L+ 
Sbjct: 456 TVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVK 515

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
           ++E  G E    TY  ++       ++ EA +LLGK+   G  P       + D Y + G
Sbjct: 516 DMEHRGIELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQG 575

Query: 517 IEKKALQALGFLEAKKEQMGPDDFERIINGL 547
               A+Q +  L A K       +  +I+G+
Sbjct: 576 KVNIAIQLMDRLSAGKWHPDIIAYTSLISGI 606



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/341 (21%), Positives = 137/341 (40%), Gaps = 30/341 (8%)

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           V+ Y+ ++DA   EN  +    I   M ++G+ P++ T  +L+    K   +D A +   
Sbjct: 146 VKIYNHILDALLDENRFQMINPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLV 205

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPK----LGMS------------------------ 348
            + S G  PD+  Y ++I +    G+ K    L MS                        
Sbjct: 206 EMSSKGCDPDEVSYTTLISSLCKLGKVKEARELAMSFTPSVPVYNALINGVCKEYTFEEA 265

Query: 349 --LVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA 406
             L+D M+  GI+ +   Y  ++ + +  G+V  +  +   M      P L + T L++ 
Sbjct: 266 FQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKG 325

Query: 407 YGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG 466
           +   G   +A   +D MIR G  P+     +++     K  L  A+++  ++E +G  P 
Sbjct: 326 FFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPN 385

Query: 467 PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALG 526
             TY+ L+D   +   ++ A ++   +   G  P       + D+  R  +  +A   + 
Sbjct: 386 VRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIE 445

Query: 527 FLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
            ++ +        F   I GL   G +  A +V   M   G
Sbjct: 446 NMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSG 486



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 103/245 (42%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NVR YS LID +AK   L+ A  +   M  +G  P++V  T +V +  +    ++A    
Sbjct: 385 NVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLI 444

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E+++     P+   +N+ I     +G+    + + D M  SG   +   Y  LL S  + 
Sbjct: 445 ENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKD 504

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
                A  +   M     +  L +   ++  Y  AG   +A      M+  G KPD    
Sbjct: 505 RRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITV 564

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +I AY K+  ++ A+ L+  L    + P    YT L+  +     + EA   L ++  
Sbjct: 565 NIVIDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLS 624

Query: 496 LGEAP 500
            G +P
Sbjct: 625 EGISP 629



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 79/357 (22%), Positives = 159/357 (44%), Gaps = 12/357 (3%)

Query: 227 NLLDRLR-EQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNE 285
           ++L RL+ E +  L  +  + + + +SF+     Y  +I+  A E  ++  + +L++M  
Sbjct: 45  DVLKRLKHEHDITLALEYFKSIANSKSFKHTPLTYQMMIEKLASEREMDCVQYLLQQMKL 104

Query: 286 NGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKL 345
            GI         ++  Y +AG+ ++A + F  ++    +P  K+YN ++ A ++  + ++
Sbjct: 105 EGISCSEDLFISVIGSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQM 164

Query: 346 GMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVE 405
              +   M   G+E +   Y  LL++  +   V GA ++   M  +   P   S T L+ 
Sbjct: 165 INPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLIS 224

Query: 406 AYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
           +  + G   +AR      + +   P      ++I    K+   ++A  LL E+   G +P
Sbjct: 225 SLCKLGKVKEARE-----LAMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDP 279

Query: 466 GPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
              +YT +++ L     +  +  +L K+   G +P      SL   +   G    + +AL
Sbjct: 280 NVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKG---GSHEAL 336

Query: 526 GFLE-AKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
            F +   +E + P+   +  +++GL +   L DA  V   ME  G   + R   ALI
Sbjct: 337 DFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALI 393


>gi|147825385|emb|CAN75494.1| hypothetical protein VITISV_030525 [Vitis vinifera]
          Length = 821

 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 147/340 (43%), Gaps = 12/340 (3%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E     NV  Y+ ++    K++ LE+   +L  M  NG  P+ VT   ++ M    G 
Sbjct: 411 MKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLAMCGNKGM 470

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
                  F  ++S GF+P++  +N++I AY   G     + + + MI +G       Y A
Sbjct: 471 HKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIKAGFTPCVTTYNA 530

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           LL + A+ GD   A  +   M+ + F+P   S +L++  Y + G+  +     +  I  G
Sbjct: 531 LLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGN-GRGIEKIEEEIYNG 589

Query: 428 HK-PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           H  P      +++ A  K+  L        E  K G++P    +  ++    + ++ + A
Sbjct: 590 HIFPSWILLRTLVLANFKRRALMGMERAFQEFCKHGYKPDLVLFNSMLSIFAKNKMYDRA 649

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERII 544
            ++L  I E G  P      SL DMYAR G   K  + L  ++  K    PD   +  +I
Sbjct: 650 HEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGEEILKGIQ--KSGGKPDLVSYNTVI 707

Query: 545 NGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTF 584
            G    G +Q+A R    M   G      ++  +++  TF
Sbjct: 708 KGFCRQGLMQEAIRTLSEMTISG------IRPCIVTYNTF 741



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 147/337 (43%), Gaps = 5/337 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG- 306
           +S E +  +VR ++ ++ A+++    E A  + +KM + G+ P +VT  V++ +Y K G 
Sbjct: 200 ISVEEYSLDVRAWTTILHAYSRIGKYERAITMFEKMRKTGLSPTLVTYNVMLDVYGKMGR 259

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           + ++     + +RS+G + D+   +++I A    G           + + G       Y 
Sbjct: 260 SWNKILGLLDEMRSNGLEFDEFTCSTVISACGREGLLDEARKFFARLKSEGYVAGTFTYN 319

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           +LL+ F + G    A  I   M      P L +   LV AY +AG  ++     D MIR 
Sbjct: 320 SLLQVFGKAGIYSEALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRK 379

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G  P+     ++I AYGK    DKAL+   ++++ G  P   TY  ++  LG+   + E 
Sbjct: 380 GIMPNAITYTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEM 439

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP--DDFERII 544
             +L  +   G AP      ++  M    G+ K   +   F E K     P  D F  +I
Sbjct: 440 IDMLCDMRSNGCAPNSVTWNTMLAMCGNKGMHKYVNRV--FREMKSCGFEPNRDTFNALI 497

Query: 545 NGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
                 G   D  +++  M   GF        AL+++
Sbjct: 498 GAYGRCGSQIDVVKMYEEMIKAGFTPCVTTYNALLNA 534



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/251 (20%), Positives = 108/251 (43%)

Query: 246 LVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKA 305
           L +  + F+ N   YS +++ +AK       E+I +++    I P  +    LV    K 
Sbjct: 549 LDMKSKGFKPNETSYSLMLNCYAKGGNGRGIEKIEEEIYNGHIFPSWILLRTLVLANFKR 608

Query: 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
             L   + AF+    HG++PD  ++NSM+  +           ++ ++  SG++     Y
Sbjct: 609 RALMGMERAFQEFCKHGYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTY 668

Query: 366 LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
            +L+  +A+ G+     +I   ++    +P L S   +++ + + G   +A      M  
Sbjct: 669 NSLMDMYARGGECWKGEEILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTI 728

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
            G +P      + +A Y  K +  +   ++  + +    P   TY ++VD   + +   E
Sbjct: 729 SGIRPCIVTYNTFVAGYSGKGMFSEVEEVISYMIQHDCRPNELTYKIVVDGYCKGKKYKE 788

Query: 486 AEQLLGKISEL 496
           A   +  I+E+
Sbjct: 789 AMDFVSNITEM 799


>gi|224138172|ref|XP_002326536.1| predicted protein [Populus trichocarpa]
 gi|222833858|gb|EEE72335.1| predicted protein [Populus trichocarpa]
          Length = 697

 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/304 (22%), Positives = 140/304 (46%), Gaps = 5/304 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           LS + ++ ++  YS LI    K + ++ A  ++ +M +NG+VPD +    L+  Y + G 
Sbjct: 356 LSAKGYKHDLISYSTLIHGFLKGHNVKSANNLVHEMRKNGLVPDYIIYISLIREYCRKGC 415

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L  A + F ++   G QPD    N ++  Y + GQ +  +  ++ M    I  +   Y  
Sbjct: 416 LKEALKNFYTMLQDGLQPDIITCNHIVDQYCSRGQFEEALIYINQMKDQNILPNSYTYSV 475

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYG-QAGDPDQARSNFDYMIRL 426
           ++    +   V  A ++  +M  +   P++   T +++ Y  Q  +P +A   +  M +L
Sbjct: 476 IINWLCKYQAVEKAWEVLPVMFKDNIFPSVIHYTTIMDGYAKQFKNPMKAWKLYRKMPKL 535

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G KPD+     ++  + K+  + KALNL  E+ ++G       +T ++D   R+  +  A
Sbjct: 536 GCKPDNVTLTVLVDMFSKRGKMSKALNLFKEMAEEGLSRDEFAFTAIIDGYCRVGNVKRA 595

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
             +  K+      P  K    L D + +  +++  +  +   + K+  + PD   +    
Sbjct: 596 WSMYKKMKRNNVTPNVKTYTCLVDGFCK--LKRLDMATMLIDDMKRNSVTPD--VKTYTA 651

Query: 547 LLAG 550
           L+AG
Sbjct: 652 LIAG 655



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 119/288 (41%), Gaps = 42/288 (14%)

Query: 256 NVRDYSKLIDAHAKENC-----LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           NV  Y+ +I+ + KE       +E A  IL++M E G  P +VT  V +H   + G+++ 
Sbjct: 184 NVYTYTIMINFYCKERHGQNIDMEQASLILEEMEEKGENPTVVTYGVYIHGLCRVGSIED 243

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A    + LRS     +   YN++I  +   G+P   + L++ M   GI            
Sbjct: 244 AWNKIQDLRSSNQPLNIYCYNALIQGFCQKGRPDEALKLLEEMKDEGI------------ 291

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
                                   P + S ++LV A+   GD +   +    M     KP
Sbjct: 292 -----------------------SPDIYSYSILVNAFCTEGDIESGMNLIQEMEHCNKKP 328

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
              C  S++     K L++  LN   EL   G++    +Y+ L+    +   +  A  L+
Sbjct: 329 PLVCCTSVLMGLRTKGLVNDCLNFFHELSAKGYKHDLISYSTLIHGFLKGHNVKSANNLV 388

Query: 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
            ++ + G  P + I +SL   Y R G  K+AL+   F    ++ + PD
Sbjct: 389 HEMRKNGLVPDYIIYISLIREYCRKGCLKEALK--NFYTMLQDGLQPD 434



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/336 (22%), Positives = 149/336 (44%), Gaps = 7/336 (2%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + +E    ++  YS L++A   E  +E    ++++M      P +V  T ++      G 
Sbjct: 286 MKDEGISPDIYSYSILVNAFCTEGDIESGMNLIQEMEHCNKKPPLVCCTSVLMGLRTKGL 345

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           ++     F  L + G++ D   Y+++I  ++     K   +LV  M  +G+     IY++
Sbjct: 346 VNDCLNFFHELSAKGYKHDLISYSTLIHGFLKGHNVKSANNLVHEMRKNGLVPDYIIYIS 405

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+R + + G ++ A +    M  +  QP + +C  +V+ Y   G  ++A    + M    
Sbjct: 406 LIREYCRKGCLKEALKNFYTMLQDGLQPDIITCNHIVDQYCSRGQFEEALIYINQMKDQN 465

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN--E 485
             P+    + +I    K   ++KA  +L  + KD   P    YT ++D   + Q  N  +
Sbjct: 466 ILPNSYTYSVIINWLCKYQAVEKAWEVLPVMFKDNIFPSVIHYTTIMDGYAK-QFKNPMK 524

Query: 486 AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERI 543
           A +L  K+ +LG  P       L DM+++ G   KAL    F E  +E +  D+  F  I
Sbjct: 525 AWKLYRKMPKLGCKPDNVTLTVLVDMFSKRGKMSKALNL--FKEMAEEGLSRDEFAFTAI 582

Query: 544 INGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
           I+G    G ++ A  ++  M+      + +    L+
Sbjct: 583 IDGYCRVGNVKRAWSMYKKMKRNNVTPNVKTYTCLV 618



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 117/259 (45%), Gaps = 5/259 (1%)

Query: 218 LQPSRIDWINLLDRL--REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLED 275
           LQP  I   +++D+   R Q  +    + ++   +++   N   YS +I+   K   +E 
Sbjct: 431 LQPDIITCNHIVDQYCSRGQFEEALIYINQM--KDQNILPNSYTYSVIINWLCKYQAVEK 488

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKA-GNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           A  +L  M ++ I P ++  T ++  Y+K   N  +A + +  +   G +PD      ++
Sbjct: 489 AWEVLPVMFKDNIFPSVIHYTTIMDGYAKQFKNPMKAWKLYRKMPKLGCKPDNVTLTVLV 548

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
             +   G+    ++L   M   G+ R E  + A++  + + G+V+ A  +   M+     
Sbjct: 549 DMFSKRGKMSKALNLFKEMAEEGLSRDEFAFTAIIDGYCRVGNVKRAWSMYKKMKRNNVT 608

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P +++ T LV+ + +    D A    D M R    PD +   ++IA Y +   +D+A  +
Sbjct: 609 PNVKTYTCLVDGFCKLKRLDMATMLIDDMKRNSVTPDVKTYTALIAGYQRIENIDRAYEV 668

Query: 455 LLELEKDGFEPGPATYTVL 473
             E++K G  P    Y  L
Sbjct: 669 FDEMKKKGTLPDHIAYLTL 687



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 123/253 (48%), Gaps = 8/253 (3%)

Query: 183 EPKPITGKCKLITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRL-REQNTQLY 240
           +P  IT  C  I D+  S  + E+    + + K+  + P+   +  +++ L + Q  +  
Sbjct: 432 QPDIIT--CNHIVDQYCSRGQFEEALIYINQMKDQNILPNSYTYSVIINWLCKYQAVEKA 489

Query: 241 FKVAELVLSEESFQTNVRDYSKLIDAHAKE--NCLEDAERILKKMNENGIVPDIVTSTVL 298
           ++V  ++  +  F + V  Y+ ++D +AK+  N ++ A ++ +KM + G  PD VT TVL
Sbjct: 490 WEVLPVMFKDNIFPS-VIHYTTIMDGYAKQFKNPMK-AWKLYRKMPKLGCKPDNVTLTVL 547

Query: 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
           V M+SK G + +A   F+ +   G   D+  + ++I  Y   G  K   S+   M  + +
Sbjct: 548 VDMFSKRGKMSKALNLFKEMAEEGLSRDEFAFTAIIDGYCRVGNVKRAWSMYKKMKRNNV 607

Query: 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418
             + + Y  L+  F +   +  A  + + M+     P +++ T L+  Y +  + D+A  
Sbjct: 608 TPNVKTYTCLVDGFCKLKRLDMATMLIDDMKRNSVTPDVKTYTALIAGYQRIENIDRAYE 667

Query: 419 NFDYMIRLGHKPD 431
            FD M + G  PD
Sbjct: 668 VFDEMKKKGTLPD 680


>gi|356554658|ref|XP_003545661.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 675

 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 131/284 (46%), Gaps = 10/284 (3%)

Query: 227 NLLDRLREQNTQLYFKV-------AELVLSEESFQ---TNVRDYSKLIDAHAKENCLEDA 276
           NL+  L   NT +Y          A L+ +E  F+    +V  Y+ LID   +   L+ A
Sbjct: 325 NLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDVA 384

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
            R+  +M ++G  PD+ T T+LV  + K GNL  AKE F+ + + G QPD+  Y + I+ 
Sbjct: 385 MRLKDEMIKHGPDPDVFTFTILVRGFCKLGNLPMAKELFDEMLNRGLQPDRFAYITRIVG 444

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
            +  G P     + + M+  G       Y   +    + G+++ A ++   M      P 
Sbjct: 445 ELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPD 504

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
             + T ++ A+  AG   +AR+ F  M+  G  P       +I +Y  +  L  A+    
Sbjct: 505 HVTYTSIIHAHLMAGHLRKARAVFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFF 564

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
           E+ + G  P   TY  L++ L +++ +++A +   ++   G +P
Sbjct: 565 EMHEKGVHPNVITYNALINGLCKVRKMDQAYKFFTEMQAKGISP 608



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 148/363 (40%), Gaps = 35/363 (9%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
            + +   Y  LI  + ++  L++A R+ ++M   G VP +VT   +++   K G +  A+
Sbjct: 256 LEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRGAVPTLVTYNTIMYGLCKWGRVSDAR 315

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           +  + + +    PD   YN++I  Y   G       L   +   G+  S   Y  L+   
Sbjct: 316 KLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRFRGLVPSVVTYNTLIDGL 375

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + GD+  A ++ + M      P + + T+LV  + + G+   A+  FD M+  G +PD 
Sbjct: 376 CRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVRGFCKLGNLPMAKELFDEMLNRGLQPDR 435

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               + I    K     KA  +  E+   GF P   TY V +D L +L  + EA +L+ K
Sbjct: 436 FAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKK 495

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKA------------------------------- 521
           +   G  P      S+   +  AG  +KA                               
Sbjct: 496 MLYNGLVPDHVTYTSIIHAHLMAGHLRKARAVFLEMLSKGIFPSVVTYTVLIHSYAVRGR 555

Query: 522 --LQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVA 577
             L  L F E  ++ + P+   +  +INGL     +  A +    M+A+G + ++     
Sbjct: 556 LKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYKFFTEMQAKGISPNKYTYTI 615

Query: 578 LIS 580
           LI+
Sbjct: 616 LIN 618



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 120/254 (47%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           V+ E   +  V  Y+ ++D+  K+  +++A ++L +M + G +P+ VT  VLV+  S +G
Sbjct: 180 VMVECGIRPTVVTYNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNVLVNGLSHSG 239

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            L++AKE  + +   G +     Y+ +I  Y   GQ      L + M++ G   +   Y 
Sbjct: 240 ELEQAKELIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRGAVPTLVTYN 299

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            ++    + G V  A ++ ++M  +   P L S   L+  Y + G+  +A   F  +   
Sbjct: 300 TIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRFR 359

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G  P      ++I    +   LD A+ L  E+ K G +P   T+T+LV    +L  +  A
Sbjct: 360 GLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVRGFCKLGNLPMA 419

Query: 487 EQLLGKISELGEAP 500
           ++L  ++   G  P
Sbjct: 420 KELFDEMLNRGLQP 433



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 129/306 (42%), Gaps = 12/306 (3%)

Query: 269 KENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKK 328
           +++ ++ A  +   M E GI P +VT   ++  + K G +  A +    ++  G  P+  
Sbjct: 167 RDSSIDVAREVYNVMVECGIRPTVVTYNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDV 226

Query: 329 VYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIM 388
            YN ++    ++G+ +    L+  M+  G+E S   Y  L+R + + G +  A ++   M
Sbjct: 227 TYNVLVNGLSHSGELEQAKELIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEM 286

Query: 389 RIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLL 448
                 PTL +   ++    + G    AR   D M+     PD     ++I  Y +   +
Sbjct: 287 LSRGAVPTLVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNI 346

Query: 449 DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSL 508
            +A  L  EL   G  P   TY  L+D L R+  ++ A +L  ++ + G  P       L
Sbjct: 347 GEAFLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTIL 406

Query: 509 CDMYARAGIEKKALQALGFLEAKKEQMGPDDF---ERIINGLLAGGFLQDAQRVHGLME- 564
              + + G    A +   F E     + PD F    RI+  L  G    D  +  G+ E 
Sbjct: 407 VRGFCKLGNLPMAKEL--FDEMLNRGLQPDRFAYITRIVGELKLG----DPSKAFGMQEE 460

Query: 565 --AQGF 568
             A+GF
Sbjct: 461 MLARGF 466



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 106/230 (46%), Gaps = 3/230 (1%)

Query: 218 LQPSRIDWIN-LLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           LQP R  +I  ++  L+  +    F + E +L+   F  ++  Y+  ID   K   L++A
Sbjct: 431 LQPDRFAYITRIVGELKLGDPSKAFGMQEEMLAR-GFPPDLITYNVFIDGLHKLGNLKEA 489

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
             ++KKM  NG+VPD VT T ++H +  AG+L +A+  F  + S G  P    Y  +I +
Sbjct: 490 SELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARAVFLEMLSKGIFPSVVTYTVLIHS 549

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           Y   G+ KL +     M   G+  +   Y AL+    +   +  A +    M+ +   P 
Sbjct: 550 YAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYKFFTEMQAKGISPN 609

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKN 446
             + T+L+      G   +A   +  M+    +PD  CT S +  +  K+
Sbjct: 610 KYTYTILINENCNLGHWQEALRLYKDMLDREIQPDS-CTHSALLKHLNKD 658



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 162/375 (43%), Gaps = 28/375 (7%)

Query: 240 YFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKM----NENGIVPDIVTS 295
           +F+ AE    +  F+ +   Y+ ++D  A+   +  A  +++K+     ENG+V D++  
Sbjct: 67  FFRWAE---RQTGFKRSELTYAVILDILARNGLMRSAYCVMEKVVSVKMENGVV-DVLIL 122

Query: 296 TVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP-KLGMSLVDMMI 354
            +L+ +Y+K   L++    F  + S G  PD K  N ++    +      +   + ++M+
Sbjct: 123 DLLLWIYAKKSMLEKCLLVFYKMVSKGMLPDLKNCNRVLRLLRDRDSSIDVAREVYNVMV 182

Query: 355 TSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPD 414
             GI  +   Y  +L SF + G V+ A Q+   M+     P   +  +LV     +G+ +
Sbjct: 183 ECGIRPTVVTYNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNVLVNGLSHSGELE 242

Query: 415 QARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
           QA+     M+RLG +        +I  Y +K  LD+A  L  E+   G  P   TY  ++
Sbjct: 243 QAKELIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRGAVPTLVTYNTIM 302

Query: 475 DWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ 534
             L +   +++A +LL  +      P      +L   Y R G   +A   L F E +   
Sbjct: 303 YGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAF--LLFAELRFRG 360

Query: 535 MGPD--DFERIINGLLAGGFLQDAQRV------HG--------LMEAQGFAASERLKVAL 578
           + P    +  +I+GL   G L  A R+      HG         +  +GF     L +A 
Sbjct: 361 LVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVRGFCKLGNLPMAK 420

Query: 579 -ISSQTFNRQRQPTR 592
            +  +  NR  QP R
Sbjct: 421 ELFDEMLNRGLQPDR 435


>gi|115472657|ref|NP_001059927.1| Os07g0548300 [Oryza sativa Japonica Group]
 gi|28564790|dbj|BAC57720.1| putative crp1 protein [Oryza sativa Japonica Group]
 gi|113611463|dbj|BAF21841.1| Os07g0548300 [Oryza sativa Japonica Group]
          Length = 661

 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/337 (22%), Positives = 149/337 (44%), Gaps = 36/337 (10%)

Query: 245 ELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK 304
           E  L+ E  +   R Y+ L+  + K   L++AE++L +M++ G+ PD  T ++LV  Y++
Sbjct: 281 EFFLAGE-IKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTR 339

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
           AG  + A+   + + + G +P   V++ ++  + + G+ +   +++  M  SG+      
Sbjct: 340 AGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHF 399

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
           Y  ++ +F +   +  A    + MR E  +P + +   L++A+ + G  D+A   FD   
Sbjct: 400 YNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFD--- 456

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
                                           E+ +     G  TY ++++ LG  Q   
Sbjct: 457 --------------------------------EMRESNCPLGTTTYNIMINLLGEEQRWE 484

Query: 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERII 544
             E +L ++ E G  P      +L D+Y R+G  K+A+  +  ++A   +  P  +  ++
Sbjct: 485 GVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSPTMYHALV 544

Query: 545 NGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
           N     G    A  V   M A G  AS  +  +LI++
Sbjct: 545 NAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINA 581



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 109/241 (45%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           +S+++         + A  +L++M+ +G+ PD     V++  + K   L  A +AF+ +R
Sbjct: 365 FSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMR 424

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +PD   +N++I A+   G+    + L D M  S        Y  ++    +     
Sbjct: 425 EEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWE 484

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
           G   +   M+ +   P + + T LV+ YG++G   +A    + M   G KP      +++
Sbjct: 485 GVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSPTMYHALV 544

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            AY ++ L D ALN++  +  DG E        L++  G  + I EA  +L  + E G  
Sbjct: 545 NAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLR 604

Query: 500 P 500
           P
Sbjct: 605 P 605



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 110/249 (44%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +ID   K NCL  A     +M E GI PD+VT   L+  + K G  DRA E F+ +R
Sbjct: 400 YNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMR 459

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
                     YN MI       + +   +++  M   G+  +   Y  L+  + + G  +
Sbjct: 460 ESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFK 519

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A      M+ +  +P+      LV AY Q G  D A +    M   G +       S+I
Sbjct: 520 EAVDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLI 579

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            A+G+   + +A ++L  ++++G  P   TYT L+  L R++   +   +  ++   G A
Sbjct: 580 NAFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKALIRVEQFEKVPVIYEEMITSGCA 639

Query: 500 PPFKIQVSL 508
           P  K +  L
Sbjct: 640 PDRKARAML 648



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 112/244 (45%), Gaps = 21/244 (8%)

Query: 203 KEEDPSPLLAEWKELLQP----SRID-WINLLDRLREQNTQLYFKVAELVLSEESFQTNV 257
           +EE   P +  W  L+       R D  I L D +RE N  L                  
Sbjct: 424 REEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPL----------------GT 467

Query: 258 RDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFES 317
             Y+ +I+   +E   E  E +L +M E G+VP+I+T T LV +Y ++G    A +  E+
Sbjct: 468 TTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEA 527

Query: 318 LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
           +++ G +P   +Y++++ AY   G     +++V  M   G+E S  +  +L+ +F +   
Sbjct: 528 MKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAFGEDRR 587

Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
           +  A  +   M+    +P + + T L++A  +    ++    ++ MI  G  PD +  A 
Sbjct: 588 IAEAFSVLQFMKENGLRPDVITYTTLMKALIRVEQFEKVPVIYEEMITSGCAPDRKARAM 647

Query: 438 MIAA 441
           + +A
Sbjct: 648 LRSA 651



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 131/305 (42%), Gaps = 4/305 (1%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMN---ENGIVPDIVTSTVLVHMYS 303
           +L E SF  ++  YS L+ +        DA  + + +    E+ + PD    + L+  ++
Sbjct: 173 LLREHSFLPDLASYSHLLASLLNTRDPPDAALLDRLLGDLRESRLEPDAPLFSDLISAFA 232

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL-VDMMITSGIERSE 362
           +A   D A E   S ++ G  P      ++I +  +A +     +L ++  +   I+   
Sbjct: 233 RARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAEAEALFLEFFLAGEIKPRT 292

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
             Y ALL+ + + G ++ A Q+ + M      P   + +LLV+AY +AG  + AR     
Sbjct: 293 RAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKE 352

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
           M   G KP     + ++A +  +    KA  +L E+   G  P    Y V++D  G+   
Sbjct: 353 MEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNC 412

Query: 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFER 542
           +  A     ++ E G  P      +L D + + G   +A++    +      +G   +  
Sbjct: 413 LGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNI 472

Query: 543 IINGL 547
           +IN L
Sbjct: 473 MINLL 477


>gi|357145546|ref|XP_003573680.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 739

 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 131/312 (41%), Gaps = 19/312 (6%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F  +   Y+  +  + +   L  A R+   M   G V    T T L+H    AG +  A 
Sbjct: 103 FAPDSHAYTSFVVGYCRAGLLAHACRLFVLMPLRGCVRTAFTYTALLHGLCGAGMVREAM 162

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
             F  +++ G  PD  VY +M+     AG+ +   +L+   +  G E +  +Y AL+  +
Sbjct: 163 SVFAGMQADGCAPDPHVYATMVHGLCGAGRTREAETLLSDAMAEGFEPNVVVYNALIDGY 222

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
              GD+  A  +   M +    P + + T L+  + ++   D+A   F  M+  G  P+ 
Sbjct: 223 CNVGDLELAVDVFERMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNV 282

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               ++I        LD A  LL  +E  G  P   T +VL+D L + + + EA+ LLG 
Sbjct: 283 VTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQLLLGS 342

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
           + + G      +  SL D   +AG    A                   +R++  L++ GF
Sbjct: 343 LIQKGIKVNEIVYTSLIDGLCKAGRFAAA-------------------DRLMQTLVSQGF 383

Query: 553 LQDAQRVHGLME 564
           + DA     L++
Sbjct: 384 VPDAHTYSSLID 395



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 153/372 (41%), Gaps = 35/372 (9%)

Query: 220 PSRIDWINLLDRLREQNTQLYFKVAELVLS---EESFQTNVRDYSKLIDAHAKENCLEDA 276
           P    + +L+D L  Q        A LVL    E+  Q +   Y+ +ID   +E   + +
Sbjct: 385 PDAHTYSSLIDGLCRQKE---LSEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVGADGS 441

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
           ++IL KM   GI PD+ T T+ V  Y   G ++ A+     +  HG  P+   YN++I  
Sbjct: 442 KKILDKMIAAGIKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALICG 501

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGA-GQITNIMRIEEFQP 395
           Y N G      S    M+ +G + +EE Y  LLR   +            +I +I E + 
Sbjct: 502 YANLGLTSQAFSTFKHMVANGCKPNEESYTVLLRLLIKKESSNNIPANSVSIWKIAEMK- 560

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
                                    + M++L    +       + +  + + LD+A  LL
Sbjct: 561 -------------------YLHGLLEEMVKLQLPSEIDIYNCFLTSLCRVDRLDEAKILL 601

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFK----IQVSLCDM 511
           +E++     P    YT ++    RL+++ EA   +  + + G  P  +    I  SLC+ 
Sbjct: 602 IEMQSANLTPSEDVYTSIIACCCRLKMLTEALTFVDSMVKSGYIPQLESYRHIISSLCE- 660

Query: 512 YARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAAS 571
               G  + A Q  G + +K+       +  +I+GLL  G++ +   +  +ME + +  S
Sbjct: 661 ---EGSIQTAKQVFGDMLSKEYNYEEIAWRILIDGLLQKGYVAECSSLLSVMEEKNYRPS 717

Query: 572 ERLKVALISSQT 583
           + L   L    T
Sbjct: 718 DALYARLTGKIT 729



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 129/307 (42%), Gaps = 22/307 (7%)

Query: 240 YFKVAELVLSEESFQ--------TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPD 291
           Y  V +L L+ + F+         NVR Y++LI    K   L+ A  +  +M + G+VP+
Sbjct: 222 YCNVGDLELAVDVFERMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPN 281

Query: 292 IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVD 351
           +VT T L+      G LD A    +S+ + G  P++   + +I A     +      L+ 
Sbjct: 282 VVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQLLLG 341

Query: 352 MMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAG 411
            +I  GI+ +E +Y +L+    + G    A ++   +  + F P   + + L++   +  
Sbjct: 342 SLIQKGIKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQGFVPDAHTYSSLIDGLCRQK 401

Query: 412 DPDQARSNFDYMIRLGHKPDDRCTASMI-------AAYGKKNLLDKALNLLLELEKDGFE 464
           +  +A    D M+  G +P       +I        A G K +LDK +         G +
Sbjct: 402 ELSEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVGADGSKKILDKMI-------AAGIK 454

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQA 524
           P   TYT+ V        + +AE ++  + + G  P      +L   YA  G+  +A   
Sbjct: 455 PDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALICGYANLGLTSQAFST 514

Query: 525 LGFLEAK 531
              + A 
Sbjct: 515 FKHMVAN 521



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 106/241 (43%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ ++          +AE +L      G  P++V    L+  Y   G+L+ A + FE + 
Sbjct: 180 YATMVHGLCGAGRTREAETLLSDAMAEGFEPNVVVYNALIDGYCNVGDLELAVDVFERMD 239

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
            +G  P+ + Y  +I  +  + +    M L   M+ +G+  +   Y AL++     G + 
Sbjct: 240 VNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLD 299

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++   M      P   +C++L++A  +     +A+     +I+ G K ++    S+I
Sbjct: 300 CAYRLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLI 359

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
               K      A  L+  L   GF P   TY+ L+D L R + ++EA  +L  + E G  
Sbjct: 360 DGLCKAGRFAAADRLMQTLVSQGFVPDAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQ 419

Query: 500 P 500
           P
Sbjct: 420 P 420



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 97/217 (44%)

Query: 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320
           S LIDA  K   + +A+ +L  + + GI  + +  T L+    KAG    A    ++L S
Sbjct: 321 SVLIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVS 380

Query: 321 HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRG 380
            GF PD   Y+S+I       +    M ++D M+  G++ S   Y  ++    +     G
Sbjct: 381 QGFVPDAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVGADG 440

Query: 381 AGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIA 440
           + +I + M     +P + + T+ V +Y   G  + A     +M+  G  P+     ++I 
Sbjct: 441 SKKILDKMIAAGIKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALIC 500

Query: 441 AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
            Y    L  +A +    +  +G +P   +YTVL+  L
Sbjct: 501 GYANLGLTSQAFSTFKHMVANGCKPNEESYTVLLRLL 537



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 116/326 (35%), Gaps = 43/326 (13%)

Query: 258 RDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFES 317
           R  +  + A A+   L D E    +M       ++ T T L++ Y  AG+L  +K    S
Sbjct: 42  RCLNAFLMALARHRMLADMESFASRMPAR----NLRTYTTLINAYCLAGDLPASKRHLSS 97

Query: 318 LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
           L   GF PD   Y S ++ Y  AG       L  +M   G  R+   Y ALL      G 
Sbjct: 98  LLRAGFAPDSHAYTSFVVGYCRAGLLAHACRLFVLMPLRGCVRTAFTYTALLHGLCGAGM 157

Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
           VR                                   +A S F  M   G  PD    A+
Sbjct: 158 VR-----------------------------------EAMSVFAGMQADGCAPDPHVYAT 182

Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           M+          +A  LL +   +GFEP    Y  L+D    +  +  A  +  ++   G
Sbjct: 183 MVHGLCGAGRTREAETLLSDAMAEGFEPNVVVYNALIDGYCNVGDLELAVDVFERMDVNG 242

Query: 498 EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQD 555
            +P  +    L   + ++    +A+    F       + P+   +  +I G  + G L  
Sbjct: 243 CSPNVRTYTELISGFCKSRKLDRAMML--FSRMVDAGLVPNVVTYTALIQGQCSDGQLDC 300

Query: 556 AQRVHGLMEAQGFAASERLKVALISS 581
           A R+   ME  G   +E     LI +
Sbjct: 301 AYRLLQSMENSGLVPNEWTCSVLIDA 326



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 83/198 (41%), Gaps = 6/198 (3%)

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           L + T L+ AY  AGD   ++ +   ++R G  PD     S +  Y +  LL  A  L +
Sbjct: 72  LRTYTTLINAYCLAGDLPASKRHLSSLLRAGFAPDSHAYTSFVVGYCRAGLLAHACRLFV 131

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
            +   G      TYT L+  L    ++ EA  +   +   G AP   +  ++      AG
Sbjct: 132 LMPLRGCVRTAFTYTALLHGLCGAGMVREAMSVFAGMQADGCAPDPHVYATMVHGLCGAG 191

Query: 517 IEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERL 574
             ++A   L   +A  E   P+   +  +I+G    G L+ A  V   M+  G + + R 
Sbjct: 192 RTREAETLLS--DAMAEGFEPNVVVYNALIDGYCNVGDLELAVDVFERMDVNGCSPNVRT 249

Query: 575 KVALISSQTFNRQRQPTR 592
              LIS   F + R+  R
Sbjct: 250 YTELISG--FCKSRKLDR 265


>gi|225445998|ref|XP_002267263.1| PREDICTED: pentatricopeptide repeat-containing protein At2g18940
           [Vitis vinifera]
 gi|297735424|emb|CBI17864.3| unnamed protein product [Vitis vinifera]
          Length = 821

 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 147/340 (43%), Gaps = 12/340 (3%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E     NV  Y+ ++    K++ LE+   +L  M  NG  P+ VT   ++ M    G 
Sbjct: 411 MKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLAMCGNKGM 470

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
                  F  ++S GF+P++  +N++I AY   G     + + + MI +G       Y A
Sbjct: 471 HKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIKAGFTPCVTTYNA 530

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           LL + A+ GD   A  +   M+ + F+P   S +L++  Y + G+  +     +  I  G
Sbjct: 531 LLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGN-GRGIEKIEEEIYNG 589

Query: 428 HK-PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           H  P      +++ A  K+  L        E  K G++P    +  ++    + ++ + A
Sbjct: 590 HIFPSWILLRTLVLANFKRRALMGMERAFQEFCKHGYKPDLVLFNSMLSIFAKNKMYDRA 649

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERII 544
            ++L  I E G  P      SL DMYAR G   K  + L  ++  K    PD   +  +I
Sbjct: 650 HEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGEEILKGIQ--KSGGKPDLVSYNTVI 707

Query: 545 NGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTF 584
            G    G +Q+A R    M   G      ++  +++  TF
Sbjct: 708 KGFCRQGLMQEAIRTLSEMTISG------IRPCIVTYNTF 741



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 147/337 (43%), Gaps = 5/337 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG- 306
           +S E +  +VR ++ ++ A+++    E A  + +KM + G+ P +VT  V++ +Y K G 
Sbjct: 200 ISVEEYSLDVRAWTTILHAYSRIGKYERAITMFEKMRKTGLSPTLVTYNVMLDVYGKMGR 259

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           + ++     + +RS+G + D+   +++I A    G           + + G       Y 
Sbjct: 260 SWNKILGLLDEMRSNGLEFDEFTCSTVISACGREGLLDEARKFFARLKSEGYVAGTFTYN 319

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           +LL+ F + G    A  I   M      P L +   LV AY +AG  ++     D MIR 
Sbjct: 320 SLLQVFGKAGIYSEALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRK 379

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G  P+     ++I AYGK    DKAL+   ++++ G  P   TY  ++  LG+   + E 
Sbjct: 380 GIMPNAITYTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEM 439

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP--DDFERII 544
             +L  +   G AP      ++  M    G+ K   +   F E K     P  D F  +I
Sbjct: 440 IDMLCDMRSNGCAPNSVTWNTMLAMCGNKGMHKYVNRV--FREMKSCGFEPNRDTFNALI 497

Query: 545 NGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
                 G   D  +++  M   GF        AL+++
Sbjct: 498 GAYGRCGSQIDVVKMYEEMIKAGFTPCVTTYNALLNA 534



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/251 (20%), Positives = 108/251 (43%)

Query: 246 LVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKA 305
           L +  + F+ N   YS +++ +AK       E+I +++    I P  +    LV    K 
Sbjct: 549 LDMKSKGFKPNETSYSLMLNCYAKGGNGRGIEKIEEEIYNGHIFPSWILLRTLVLANFKR 608

Query: 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
             L   + AF+    HG++PD  ++NSM+  +           ++ ++  SG++     Y
Sbjct: 609 RALMGMERAFQEFCKHGYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTY 668

Query: 366 LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
            +L+  +A+ G+     +I   ++    +P L S   +++ + + G   +A      M  
Sbjct: 669 NSLMDMYARGGECWKGEEILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTI 728

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
            G +P      + +A Y  K +  +   ++  + +    P   TY ++VD   + +   E
Sbjct: 729 SGIRPCIVTYNTFVAGYSGKGMFSEVEEVISYMIQHDCRPNELTYKIVVDGYCKGKKYKE 788

Query: 486 AEQLLGKISEL 496
           A   +  I+E+
Sbjct: 789 AMDFVSNITEM 799


>gi|359490014|ref|XP_002275213.2| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Vitis vinifera]
          Length = 494

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/338 (22%), Positives = 155/338 (45%), Gaps = 4/338 (1%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
            + ++R Y+ ++ +  ++  LE A+++L +M+  GI  +  T   LV  Y +AG L+   
Sbjct: 89  LKLDLRVYNVMLRSCLRKGLLELADKVLAEMDALGIGRNRATYEALVDYYGRAGRLNDVW 148

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
                +   GF PD  VY+ +I  Y + G  K  M +V  +   G+   + IY +++ +F
Sbjct: 149 AVIGEMSRDGFGPDSFVYSKVIGVYRDNGMWKKAMEIVREIREMGVSLDKRIYNSIIDTF 208

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            +CG++  A ++   M+ E  +P + +   L++ + +AGD  +A   F  M   G  PD 
Sbjct: 209 GKCGELSEALEVFEKMQEEGVKPDIMTWNSLIQWHCKAGDVGKALELFSKMQEEGLYPDP 268

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
           +   ++I+  G++   D        ++  G +   A Y +LVD  G+       E+ +  
Sbjct: 269 KIFITIISRLGEQGKWDVIKRNFENMKCRGHQRSGAIYAILVDIYGQYGRFQGPEECISA 328

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
           +   G  P   +   L + YA+ G+ ++ ++ L  +E +  +        +IN     G 
Sbjct: 329 LKSEGIQPSASMFCVLANAYAQQGLCEQTVKVLQLMETEGIEPNLIMLNMLINAFGIAGR 388

Query: 553 LQDAQRVHGLMEAQGFA----ASERLKVALISSQTFNR 586
             +A  V+  ++  G +        L  A I ++ F++
Sbjct: 389 HLEALSVYHHIKDTGISPDVVTYSTLMKACIRARKFDK 426



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 125/271 (46%), Gaps = 2/271 (0%)

Query: 235 QNTQLYFKVAELV--LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDI 292
           ++  ++ K  E+V  + E     + R Y+ +ID   K   L +A  + +KM E G+ PDI
Sbjct: 174 RDNGMWKKAMEIVREIREMGVSLDKRIYNSIIDTFGKCGELSEALEVFEKMQEEGVKPDI 233

Query: 293 VTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDM 352
           +T   L+  + KAG++ +A E F  ++  G  PD K++ ++I      G+  +     + 
Sbjct: 234 MTWNSLIQWHCKAGDVGKALELFSKMQEEGLYPDPKIFITIISRLGEQGKWDVIKRNFEN 293

Query: 353 MITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGD 412
           M   G +RS  IY  L+  + Q G  +G  +  + ++ E  QP+     +L  AY Q G 
Sbjct: 294 MKCRGHQRSGAIYAILVDIYGQYGRFQGPEECISALKSEGIQPSASMFCVLANAYAQQGL 353

Query: 413 PDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTV 472
            +Q       M   G +P+      +I A+G      +AL++   ++  G  P   TY+ 
Sbjct: 354 CEQTVKVLQLMETEGIEPNLIMLNMLINAFGIAGRHLEALSVYHHIKDTGISPDVVTYST 413

Query: 473 LVDWLGRLQLINEAEQLLGKISELGEAPPFK 503
           L+    R +  ++  ++  ++   G  P  K
Sbjct: 414 LMKACIRARKFDKVPEIYEEMESAGCTPDRK 444



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 101/212 (47%)

Query: 356 SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ 415
           +G E S  +Y A +R   + GDV  A ++   M    F  +L S T ++EA G  G   +
Sbjct: 17  NGEELSGVVYNARIRESCRVGDVDKAMKLLAQMEALGFSLSLGSYTTVIEALGSVGRTLE 76

Query: 416 ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
           A + F  M+ LG K D R    M+ +  +K LL+ A  +L E++  G     ATY  LVD
Sbjct: 77  AEAIFREMVHLGLKLDLRVYNVMLRSCLRKGLLELADKVLAEMDALGIGRNRATYEALVD 136

Query: 476 WLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQM 535
           + GR   +N+   ++G++S  G  P   +   +  +Y   G+ KKA++ +  +      +
Sbjct: 137 YYGRAGRLNDVWAVIGEMSRDGFGPDSFVYSKVIGVYRDNGMWKKAMEIVREIREMGVSL 196

Query: 536 GPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
               +  II+     G L +A  V   M+ +G
Sbjct: 197 DKRIYNSIIDTFGKCGELSEALEVFEKMQEEG 228



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 60/269 (22%), Positives = 121/269 (44%), Gaps = 5/269 (1%)

Query: 245 ELVLSEESFQTNVRDYSKLI-DAHAKENC----LEDAERILKKMNENGIVPDIVTSTVLV 299
           ++ + E S   N  + S ++ +A  +E+C    ++ A ++L +M   G    + + T ++
Sbjct: 6   QVSVEEVSISENGEELSGVVYNARIRESCRVGDVDKAMKLLAQMEALGFSLSLGSYTTVI 65

Query: 300 HMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
                 G    A+  F  +   G + D +VYN M+ + +  G  +L   ++  M   GI 
Sbjct: 66  EALGSVGRTLEAEAIFREMVHLGLKLDLRVYNVMLRSCLRKGLLELADKVLAEMDALGIG 125

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
           R+   Y AL+  + + G +     +   M  + F P     + ++  Y   G   +A   
Sbjct: 126 RNRATYEALVDYYGRAGRLNDVWAVIGEMSRDGFGPDSFVYSKVIGVYRDNGMWKKAMEI 185

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
              +  +G   D R   S+I  +GK   L +AL +  +++++G +P   T+  L+ W  +
Sbjct: 186 VREIREMGVSLDKRIYNSIIDTFGKCGELSEALEVFEKMQEEGVKPDIMTWNSLIQWHCK 245

Query: 480 LQLINEAEQLLGKISELGEAPPFKIQVSL 508
              + +A +L  K+ E G  P  KI +++
Sbjct: 246 AGDVGKALELFSKMQEEGLYPDPKIFITI 274



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 117/259 (45%), Gaps = 8/259 (3%)

Query: 283 MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
           ++ENG     V     +    + G++D+A +    + + GF      Y ++I A  + G+
Sbjct: 14  ISENGEELSGVVYNARIRESCRVGDVDKAMKLLAQMEALGFSLSLGSYTTVIEALGSVGR 73

Query: 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQI---TNIMRIEEFQPTLES 399
                ++   M+  G++    +Y  +LRS  + G +  A ++    + + I   + T E+
Sbjct: 74  TLEAEAIFREMVHLGLKLDLRVYNVMLRSCLRKGLLELADKVLAEMDALGIGRNRATYEA 133

Query: 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELE 459
              LV+ YG+AG  +   +    M R G  PD    + +I  Y    +  KA+ ++ E+ 
Sbjct: 134 ---LVDYYGRAGRLNDVWAVIGEMSRDGFGPDSFVYSKVIGVYRDNGMWKKAMEIVREIR 190

Query: 460 KDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEK 519
           + G       Y  ++D  G+   ++EA ++  K+ E G  P      SL   + +AG   
Sbjct: 191 EMGVSLDKRIYNSIIDTFGKCGELSEALEVFEKMQEEGVKPDIMTWNSLIQWHCKAGDVG 250

Query: 520 KALQALGFLEAKKEQMGPD 538
           KAL+   F + ++E + PD
Sbjct: 251 KALEL--FSKMQEEGLYPD 267


>gi|302143623|emb|CBI22376.3| unnamed protein product [Vitis vinifera]
          Length = 554

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 128/269 (47%)

Query: 292 IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVD 351
           ++T TVL+ +  K     +A E  E +   G  PD   YNS++      G+ +    ++ 
Sbjct: 270 LITYTVLIELVCKHCGTVQAMEVLEDMAIEGCYPDIVTYNSLVNYTCKQGKYEDTALIIY 329

Query: 352 MMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAG 411
            +++ G+  +   Y  LL S    G      +I  IM      PT+ +  +L+    + G
Sbjct: 330 NLLSHGMGPNTVTYNTLLHSLCTHGYWDEVDEILLIMNTTSQPPTVVTYNILINGLCKYG 389

Query: 412 DPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYT 471
             D+A + FD M+     PD     +++AA  K+ ++D+AL+LL  L      PG  TY 
Sbjct: 390 LLDRAINFFDQMVSHNCLPDIITYNTLLAALCKEGMVDEALHLLHSLNDTRCSPGLITYN 449

Query: 472 VLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK 531
           +++D L +   + +A +L G++ E G AP      +L     R  + + AL  L  +  +
Sbjct: 450 IVIDGLAKKGCMEKAMELYGEMIERGFAPDDITHRTLFWGLFRLDLVEDALVILKEMNKR 509

Query: 532 KEQMGPDDFERIINGLLAGGFLQDAQRVH 560
            +++    F  +I+GL A G +++A ++H
Sbjct: 510 NQRIKNSAFRFVIHGLCAAGMIEEANQLH 538



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/332 (22%), Positives = 131/332 (39%), Gaps = 21/332 (6%)

Query: 261 SKLIDAHAKEN-------CL------------EDAERILKKMNENGIVPDIVTSTVLVHM 301
           S+LID  A+ N       C+            E A R+LK M  +G +PDI+T  +LV  
Sbjct: 150 SRLIDVMARRNQIPYFPSCINLIRGLIKLESTERATRVLKIMVMSGGIPDIITYNMLVGG 209

Query: 302 YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS 361
             K G L  A E  + +   G  PD   YN+++    + G     +      +  G    
Sbjct: 210 LCKKGLLKTAIELLDEMSLSGCPPDAITYNTILRCMFDHGGFDQAIGFWKDQLRKGCPAY 269

Query: 362 EEIYLALLRSFA-QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
              Y  L+      CG V+ A ++   M IE   P + +   LV    + G  +      
Sbjct: 270 LITYTVLIELVCKHCGTVQ-AMEVLEDMAIEGCYPDIVTYNSLVNYTCKQGKYEDTALII 328

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
             ++  G  P+     +++ +       D+   +LL +      P   TY +L++ L + 
Sbjct: 329 YNLLSHGMGPNTVTYNTLLHSLCTHGYWDEVDEILLIMNTTSQPPTVVTYNILINGLCKY 388

Query: 481 QLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF 540
            L++ A     ++      P      +L     + G+  +AL  L  L   +   G   +
Sbjct: 389 GLLDRAINFFDQMVSHNCLPDIITYNTLLAALCKEGMVDEALHLLHSLNDTRCSPGLITY 448

Query: 541 ERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572
             +I+GL   G ++ A  ++G M  +GFA  +
Sbjct: 449 NIVIDGLAKKGCMEKAMELYGEMIERGFAPDD 480



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/249 (21%), Positives = 104/249 (41%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           ++ E    ++  Y+ L++   K+   ED   I+  +  +G+ P+ VT   L+H     G 
Sbjct: 296 MAIEGCYPDIVTYNSLVNYTCKQGKYEDTALIIYNLLSHGMGPNTVTYNTLLHSLCTHGY 355

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            D   E    + +    P    YN +I      G     ++  D M++         Y  
Sbjct: 356 WDEVDEILLIMNTTSQPPTVVTYNILINGLCKYGLLDRAINFFDQMVSHNCLPDIITYNT 415

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           LL +  + G V  A  + + +      P L +  ++++   + G  ++A   +  MI  G
Sbjct: 416 LLAALCKEGMVDEALHLLHSLNDTRCSPGLITYNIVIDGLAKKGCMEKAMELYGEMIERG 475

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PDD    ++     + +L++ AL +L E+ K       + +  ++  L    +I EA 
Sbjct: 476 FAPDDITHRTLFWGLFRLDLVEDALVILKEMNKRNQRIKNSAFRFVIHGLCAAGMIEEAN 535

Query: 488 QLLGKISEL 496
           QL  K++EL
Sbjct: 536 QLHQKLTEL 544



 Score = 43.5 bits (101), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 45/113 (39%)

Query: 246 LVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKA 305
           L+++  S    V  Y+ LI+   K   L+ A     +M  +  +PDI+T   L+    K 
Sbjct: 364 LIMNTTSQPPTVVTYNILINGLCKYGLLDRAINFFDQMVSHNCLPDIITYNTLLAALCKE 423

Query: 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
           G +D A     SL      P    YN +I      G  +  M L   MI  G 
Sbjct: 424 GMVDEALHLLHSLNDTRCSPGLITYNIVIDGLAKKGCMEKAMELYGEMIERGF 476


>gi|357130063|ref|XP_003566676.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 822

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 112/220 (50%), Gaps = 3/220 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LIDA+ K   +++A  I  +M E G++PD  T   ++  +S+ G L  A + F  + 
Sbjct: 405 YNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMI 464

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL-ALLRSFAQCGDV 378
           + G +PD  VYNS+I  +   G       L+  M++ GI R   ++  +++ S  + G V
Sbjct: 465 AMGLKPDTIVYNSLIQGFCMHGNLVKAKELISEMMSRGIPRPNTVFFNSIINSLCKEGRV 524

Query: 379 RGAGQITN-IMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
             A  I + ++ I E +P + +   L++ YG  G  ++A    D MI +G +PD    ++
Sbjct: 525 VEAQDIFDLVIHIGE-RPDVITFNSLIDGYGLVGKMEKAFGVLDAMISVGIEPDVVTYSA 583

Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
           ++  Y +   +D  L L  E+   G +P   TY +++  L
Sbjct: 584 LLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIILHGL 623



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 90/378 (23%), Positives = 154/378 (40%), Gaps = 44/378 (11%)

Query: 197 KILSLEKEEDPSP--LLAEWKEL-LQPSRIDWINLLDRLREQN-TQLYFKVAE-LVLSEE 251
           K L   K  D +   LL    EL ++P  I +  +L  L E + +Q    +   +V    
Sbjct: 162 KCLCHAKRSDDAVNVLLHRMPELGVEPDTISYSTVLKSLCEDSRSQRALDLLHTMVKKSG 221

Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311
               NV  Y+ +I    +E  +  A  +  +M + G+VPD+VT +  +    KA  +D+A
Sbjct: 222 GCSPNVVSYNTVIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKA 281

Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
           +     + S+GF+PDK  YN MI  Y   GQ K          T+G+ R           
Sbjct: 282 ELVLRQMISNGFEPDKVTYNCMIHGYSILGQWKE---------TAGMFRE---------- 322

Query: 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
                           M      P + +C   + +  + G   +A   FD M   GHKPD
Sbjct: 323 ----------------MTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPD 366

Query: 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
               + ++  Y  +  +   LNL   +E +G     + Y +L+D  G+  +++EA  +  
Sbjct: 367 LVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDEAMLIFT 426

Query: 492 KISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLA 549
           ++ E G  P      ++   ++R G    A+    F +     + PD   +  +I G   
Sbjct: 427 QMQERGVMPDAWTYGTVIAAFSRMGRLADAMDK--FNQMIAMGLKPDTIVYNSLIQGFCM 484

Query: 550 GGFLQDAQRVHGLMEAQG 567
            G L  A+ +   M ++G
Sbjct: 485 HGNLVKAKELISEMMSRG 502



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 141/372 (37%), Gaps = 43/372 (11%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  YS  IDA  K   ++ AE +L++M  NG  PD VT   ++H YS  G        F
Sbjct: 261 DVVTYSSYIDALCKARAMDKAELVLRQMISNGFEPDKVTYNCMIHGYSILGQWKETAGMF 320

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G  PD    NS + +    G+ K      D M   G +     Y  LL  +A  
Sbjct: 321 REMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAE 380

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ-------------------- 415
           G V     + N M             +L++AYG+ G  D+                    
Sbjct: 381 GYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTY 440

Query: 416 ---------------ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
                          A   F+ MI +G KPD     S+I  +     L KA  L+ E+  
Sbjct: 441 GTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTIVYNSLIQGFCMHGNLVKAKELISEMMS 500

Query: 461 DGF-EPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEK 519
            G   P    +  +++ L +   + EA+ +   +  +GE P      SL D Y   G+  
Sbjct: 501 RGIPRPNTVFFNSIINSLCKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGY---GLVG 557

Query: 520 KALQALGFLEAK-KEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKV 576
           K  +A G L+A     + PD   +  +++G    G + D   +   M ++G   +  +  
Sbjct: 558 KMEKAFGVLDAMISVGIEPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTT-ITY 616

Query: 577 ALISSQTFNRQR 588
            +I    FN  R
Sbjct: 617 GIILHGLFNDGR 628



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/249 (21%), Positives = 113/249 (45%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N   ++ +I++  KE  + +A+ I   +   G  PD++T   L+  Y   G +++A    
Sbjct: 507 NTVFFNSIINSLCKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGVL 566

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           +++ S G +PD   Y++++  Y   G+   G+ L   M++ G++ +   Y  +L      
Sbjct: 567 DAMISVGIEPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIILHGLFND 626

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G   GA ++ + M        + +C +++    +    D+A + F  +  +  K +    
Sbjct: 627 GRTVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIALFKKLGAMNVKFNIAII 686

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            +MI A  K    ++A  L   +   G  P  +TY V++  L +   + EA+ +   + +
Sbjct: 687 NTMIDAMYKVRKREEANELFDSISATGLVPNASTYGVMITNLLKEGSVEEADNMFSLMEK 746

Query: 496 LGEAPPFKI 504
            G AP  ++
Sbjct: 747 SGCAPSSRL 755



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 71/317 (22%), Positives = 131/317 (41%), Gaps = 3/317 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  +I A ++   L DA     +M   G+ PD +    L+  +   GNL +AKE    + 
Sbjct: 440 YGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTIVYNSLIQGFCMHGNLVKAKELISEMM 499

Query: 320 SHGF-QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI-YLALLRSFAQCGD 377
           S G  +P+   +NS+I +    G+      + D++I  G ER + I + +L+  +   G 
Sbjct: 500 SRGIPRPNTVFFNSIINSLCKEGRVVEAQDIFDLVIHIG-ERPDVITFNSLIDGYGLVGK 558

Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
           +  A  + + M     +P + + + L++ Y + G  D     F  M+  G KP       
Sbjct: 559 MEKAFGVLDAMISVGIEPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGI 618

Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           ++           A  +  E+ + G     +T  +++  L R    +EA  L  K+  + 
Sbjct: 619 ILHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIALFKKLGAMN 678

Query: 498 EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQ 557
                 I  ++ D   +    ++A +    + A         +  +I  LL  G +++A 
Sbjct: 679 VKFNIAIINTMIDAMYKVRKREEANELFDSISATGLVPNASTYGVMITNLLKEGSVEEAD 738

Query: 558 RVHGLMEAQGFAASERL 574
            +  LME  G A S RL
Sbjct: 739 NMFSLMEKSGCAPSSRL 755



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 64/298 (21%), Positives = 119/298 (39%), Gaps = 7/298 (2%)

Query: 289 VPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMS 348
           +P + T  +L+    +A         F      G + D  V N ++    +A +    ++
Sbjct: 116 LPTVCTYNILMDCCCRAHRPTVGFALFGRFLKTGLKTDVIVANILLKCLCHAKRSDDAVN 175

Query: 349 -LVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQI----TNIMRIEEFQPTLESCTLL 403
            L+  M   G+E     Y  +L+S   C D R    +    T + +     P + S   +
Sbjct: 176 VLLHRMPELGVEPDTISYSTVLKSL--CEDSRSQRALDLLHTMVKKSGGCSPNVVSYNTV 233

Query: 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGF 463
           +  + + G+  +A + F  M++ G  PD    +S I A  K   +DKA  +L ++  +GF
Sbjct: 234 IHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLRQMISNGF 293

Query: 464 EPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
           EP   TY  ++     L    E   +  +++  G  P      S      + G  K+A +
Sbjct: 294 EPDKVTYNCMIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAE 353

Query: 524 ALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
               + AK  +     +  +++G  A G++ D   +   ME  G  A   +   LI +
Sbjct: 354 FFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDA 411


>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Brachypodium distachyon]
          Length = 692

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 96/399 (24%), Positives = 175/399 (43%), Gaps = 36/399 (9%)

Query: 194 ITDKILSLEKE----EDPSPLLAEWKELLQPSRIDWIN--LLDRLREQNTQLYFKVAELV 247
           + D +LSL  +    +D    LA  +EL  P      N  LL   RE++++L +++ E +
Sbjct: 130 VVDTLLSLLADRGLLDDAVLALARVRELRVPPNTRTCNHILLCLARERSSELAWRLFEQL 189

Query: 248 LSEESFQTN------------------------------VRDYSKLIDAHAKENCLEDAE 277
            +   F  N                              V  Y+ LID + K   LE+ E
Sbjct: 190 PAPNVFTFNIMIDFLCKEGDLAEARALLARMKAIGCSPDVVTYNSLIDGYGKCGELEEVE 249

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
           +++ +M   G  PD+VT   LV+ + K G ++RA   F  ++  G   +   +++ + A+
Sbjct: 250 KLVGEMRGCGCRPDVVTYNALVNCFCKFGRMERAYSYFAEMKREGVMANVVTFSTFVDAF 309

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
              G  +  M L   M   G++ +E  Y  L+    + G +  A  +TN M  +     +
Sbjct: 310 CKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVPLNV 369

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
            + T+LV+   + G   +A   F  M R G + ++    ++I  +      ++AL+LL E
Sbjct: 370 VTYTVLVDGLCKEGKVAEAEDVFRLMERAGIRANELLYTTLIHGHFVYKNSERALSLLSE 429

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI 517
           ++  G E   + Y  L+  L  LQ ++EA+ LL K+ E G  P   I  ++ D   +A  
Sbjct: 430 MKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDACFKARK 489

Query: 518 EKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDA 556
           E +A+  L  +     +     +  +++GL   G + +A
Sbjct: 490 ESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEA 528



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 130/309 (42%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +  E    NV  +S  +DA  K   + +A ++  +M   G+ P+ VT T LV    KAG 
Sbjct: 290 MKREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGR 349

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           LD A      +   G   +   Y  ++      G+      +  +M  +GI  +E +Y  
Sbjct: 350 LDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGIRANELLYTT 409

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+       +   A  + + M+ +  +  +     L+         D+A+S  + M   G
Sbjct: 410 LIHGHFVYKNSERALSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECG 469

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            KP++    +++ A  K     +A+ LL ++   GF P   TY  LVD L +   I+EA 
Sbjct: 470 LKPNNVIYTNIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAI 529

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
               K+ +LG  P  +   +L D   + G   KA+  L  +  K   +       +++G 
Sbjct: 530 SHFNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGH 589

Query: 548 LAGGFLQDA 556
           L  G LQDA
Sbjct: 590 LKQGNLQDA 598



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 81/184 (44%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E   + N   Y+ ++DA  K     +A  +L+KM ++G  P+IVT   LV    KAG+
Sbjct: 465 MDECGLKPNNVIYTNIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGS 524

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D A   F  +   G +P+ + Y +++      G+    + L+D MI  G+     +  +
Sbjct: 525 IDEAISHFNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTS 584

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    + G+++ A  +   M     Q  L   T  V  +       +AR     MI  G
Sbjct: 585 LMDGHLKQGNLQDAFALKAKMINSGLQLDLYGYTCFVWGFCNLNMIQEAREVLSEMIENG 644

Query: 428 HKPD 431
             PD
Sbjct: 645 ITPD 648



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 110/249 (44%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + ++  + +V  Y  LI        L++A+ +L KM+E G+ P+ V  T ++    KA  
Sbjct: 430 MKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDACFKARK 489

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
              A    + +   GF+P+   Y +++     AG     +S  + M+  G+E + + Y A
Sbjct: 490 ESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTA 549

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    + G +  A  + + M  +        CT L++ + + G+   A +    MI  G
Sbjct: 550 LVDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQDAFALKAKMINSG 609

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            + D       +  +   N++ +A  +L E+ ++G  P    Y  L++   +L  + EA 
Sbjct: 610 LQLDLYGYTCFVWGFCNLNMIQEAREVLSEMIENGITPDAVVYNCLINKCQKLGNMEEAA 669

Query: 488 QLLGKISEL 496
            L  ++  L
Sbjct: 670 ILQNEMESL 678



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/220 (20%), Positives = 94/220 (42%), Gaps = 1/220 (0%)

Query: 198 ILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTN 256
           + +L+K ++   LL +  E  L+P+ + + N++D   +   +         + +  F+ N
Sbjct: 449 LCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDACFKARKESEAIALLQKMMDSGFRPN 508

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           +  Y  L+D   K   +++A     KM + G+ P++   T LV    K G LD+A    +
Sbjct: 509 IVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVLLLD 568

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
            +   G   D  V  S++  ++  G  +   +L   MI SG++     Y   +  F    
Sbjct: 569 EMIDKGMSLDNVVCTSLMDGHLKQGNLQDAFALKAKMINSGLQLDLYGYTCFVWGFCNLN 628

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
            ++ A ++ + M      P       L+    + G+ ++A
Sbjct: 629 MIQEAREVLSEMIENGITPDAVVYNCLINKCQKLGNMEEA 668



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 93/224 (41%), Gaps = 17/224 (7%)

Query: 194 ITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLREQNT-----QLYFKVAELV 247
           I D      KE +   LL +  +   +P+ + +  L+D L +  +       + K+ +L 
Sbjct: 480 IMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDL- 538

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
                 + NV+ Y+ L+D   K   L+ A  +L +M + G+  D V  T L+  + K GN
Sbjct: 539 ----GLEPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGN 594

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L  A      + + G Q D   Y   +  + N    +    ++  MI +GI     +Y  
Sbjct: 595 LQDAFALKAKMINSGLQLDLYGYTCFVWGFCNLNMIQEAREVLSEMIENGITPDAVVYNC 654

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAG 411
           L+    + G++  A  + N M       +L SCT    A G  G
Sbjct: 655 LINKCQKLGNMEEAAILQNEME------SLLSCTNADAASGSDG 692


>gi|115438490|ref|NP_001043552.1| Os01g0611900 [Oryza sativa Japonica Group]
 gi|21104680|dbj|BAB93270.1| fertility restorer homologue-like [Oryza sativa Japonica Group]
 gi|113533083|dbj|BAF05466.1| Os01g0611900 [Oryza sativa Japonica Group]
 gi|125571150|gb|EAZ12665.1| hypothetical protein OsJ_02580 [Oryza sativa Japonica Group]
 gi|215767882|dbj|BAH00111.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 800

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 135/312 (43%), Gaps = 4/312 (1%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           + F  NV  Y+ L+  H  +   + A  +L +M +NG+  +  T   L++     G +  
Sbjct: 450 KGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCE 509

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
             E  +   + GF P    YNS+I  ++ AG      ++   M   GI  +   Y + + 
Sbjct: 510 VGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFID 569

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
            + +      A ++ N +R +  +P + +   L+  + Q G+   A      M++ G  P
Sbjct: 570 GYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIFGFCQEGNMSHALQVLVLMLKDGLLP 629

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           +     S I  Y    ++++AL L  ++ K+G +   ATYT L+D   +   +  A +L 
Sbjct: 630 NISVYNSFITGYKNLKMMEEALRLYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLY 689

Query: 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLL 548
            ++   G  P      +L     R G    A + L   E  +  + P+   +  +ING L
Sbjct: 690 SEMVAKGNIPDHITFTALTHGLCRNGDIDDARKLLD--EMNRLDIRPNVLMYNMLINGYL 747

Query: 549 AGGFLQDAQRVH 560
             G LQ+A R+H
Sbjct: 748 RNGKLQEAFRLH 759



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 99/219 (45%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  Y+  ID + K +C + A ++L  +   G+ PDI     L+  + + GN+  A +  
Sbjct: 560 NIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIFGFCQEGNMSHALQVL 619

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G  P+  VYNS I  Y N    +  + L + MI  GI+     Y  L+  F++ 
Sbjct: 620 VLMLKDGLLPNISVYNSFITGYKNLKMMEEALRLYEKMIKEGIDLDTATYTTLIDGFSKD 679

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G+V  A ++ + M  +   P   + T L     + GD D AR   D M RL  +P+    
Sbjct: 680 GNVTFALKLYSEMVAKGNIPDHITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMY 739

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
             +I  Y +   L +A  L  E+ +    P   TY +LV
Sbjct: 740 NMLINGYLRNGKLQEAFRLHDEMLERKIMPDDTTYDILV 778



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 132/308 (42%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI    +   + +A  + +KMNE G+ P IVT   L+  Y   G +D A + +  + 
Sbjct: 389 YNILIHWLCQRRKIREALNLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMP 448

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             GF P+   Y +++  ++N        +L+  M  +G+  ++  Y  L+      G V 
Sbjct: 449 GKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVC 508

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
             G++      E F PT  +   ++  + +AG    A + +  M   G  P+     S I
Sbjct: 509 EVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFI 568

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             Y K +  D AL +L ++   G  P  A Y  L+    +   ++ A Q+L  + + G  
Sbjct: 569 DGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIFGFCQEGNMSHALQVLVLMLKDGLL 628

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P   +  S    Y    + ++AL+    +  +   +    +  +I+G    G +  A ++
Sbjct: 629 PNISVYNSFITGYKNLKMMEEALRLYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKL 688

Query: 560 HGLMEAQG 567
           +  M A+G
Sbjct: 689 YSEMVAKG 696



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/292 (22%), Positives = 124/292 (42%), Gaps = 2/292 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + +     N   Y+ LI+       + +   +LK+    G VP  +T   +++ + KAG 
Sbjct: 482 MKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGM 541

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A   ++ + + G  P+   Y S I  Y       L + +++ +   G+      Y +
Sbjct: 542 MGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNS 601

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+  F Q G++  A Q+  +M  +   P +      +  Y      ++A   ++ MI+ G
Sbjct: 602 LIFGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRLYEKMIKEG 661

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
              D     ++I  + K   +  AL L  E+   G  P   T+T L   L R   I++A 
Sbjct: 662 IDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTALTHGLCRNGDIDDAR 721

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD 539
           +LL +++ L   P   +   L + Y R G  ++A +     E  + ++ PDD
Sbjct: 722 KLLDEMNRLDIRPNVLMYNMLINGYLRNGKLQEAFRLHD--EMLERKIMPDD 771



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 116/271 (42%), Gaps = 1/271 (0%)

Query: 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320
           + L+  +  +  +  A  I ++   +G+VP  VT TVL+   ++ G  ++A E    +R 
Sbjct: 286 TTLMHGYCLQREVRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRD 345

Query: 321 HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRG 380
           HG  P    +N +I   +N    K  +SL   M  SGI  +   Y  L+    Q   +R 
Sbjct: 346 HGLLPSTNEFNMVIKGLLNDKLWKDAVSLFKEMADSGIPDAFT-YNILIHWLCQRRKIRE 404

Query: 381 AGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIA 440
           A  +   M     +P + +   L+  Y   G  D+A   +  M   G  P+     +++ 
Sbjct: 405 ALNLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMK 464

Query: 441 AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
            +  K   DKA  LL E++++G      TY  L++ L  +  + E  ++L +    G  P
Sbjct: 465 GHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVP 524

Query: 501 PFKIQVSLCDMYARAGIEKKALQALGFLEAK 531
                 S+ + + +AG+   A      + AK
Sbjct: 525 TAMTYNSIINGFIKAGMMGSAFAVYQQMCAK 555



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 71/321 (22%), Positives = 130/321 (40%), Gaps = 1/321 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           +  ++ A  KE   +DA R+  +M  + I PD    +V +    K  + +RA      ++
Sbjct: 180 FDVVMRACFKEGMYDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLVLRKMQ 239

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             GF P    +NS++   V  G+ +  + + D ++ +G + S  +   L+  +    +VR
Sbjct: 240 DAGFVPWDFTFNSVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQREVR 299

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  I      +   PT  + T+L+    + G P++A      M   G  P       +I
Sbjct: 300 KALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNMVI 359

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
                  L   A++L  E+   G  P   TY +L+ WL + + I EA  L  K++E G  
Sbjct: 360 KGLLNDKLWKDAVSLFKEMADSGI-PDAFTYNILIHWLCQRRKIREALNLWEKMNETGVK 418

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P      SL   Y   G   +A++    +  K        +  ++ G +       A  +
Sbjct: 419 PYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYAL 478

Query: 560 HGLMEAQGFAASERLKVALIS 580
              M+  G + ++     LI+
Sbjct: 479 LAEMKQNGVSCNDYTYNTLIN 499



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 65/135 (48%), Gaps = 5/135 (3%)

Query: 231 RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVP 290
           ++ E+  +LY K     + +E    +   Y+ LID  +K+  +  A ++  +M   G +P
Sbjct: 645 KMMEEALRLYEK-----MIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIP 699

Query: 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV 350
           D +T T L H   + G++D A++  + +     +P+  +YN +I  Y+  G+ +    L 
Sbjct: 700 DHITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNGKLQEAFRLH 759

Query: 351 DMMITSGIERSEEIY 365
           D M+   I   +  Y
Sbjct: 760 DEMLERKIMPDDTTY 774



 Score = 47.0 bits (110), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 77/172 (44%), Gaps = 1/172 (0%)

Query: 233 REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDI 292
           +E N     +V  L+L ++    N+  Y+  I  +     +E+A R+ +KM + GI  D 
Sbjct: 608 QEGNMSHALQVLVLML-KDGLLPNISVYNSFITGYKNLKMMEEALRLYEKMIKEGIDLDT 666

Query: 293 VTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDM 352
            T T L+  +SK GN+  A + +  + + G  PD   + ++       G       L+D 
Sbjct: 667 ATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTALTHGLCRNGDIDDARKLLDE 726

Query: 353 MITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
           M    I  +  +Y  L+  + + G ++ A ++ + M   +  P   +  +LV
Sbjct: 727 MNRLDIRPNVLMYNMLINGYLRNGKLQEAFRLHDEMLERKIMPDDTTYDILV 778



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 81/192 (42%)

Query: 283 MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
           M   G+ PD  + T L+ + +++ +   A      +R  G   D  +++ ++ A    G 
Sbjct: 133 MEARGVTPDAKSRTDLLAVTARSASAADALALLAEMRGKGRPLDAWMFDVVMRACFKEGM 192

Query: 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402
               + L D M  S IE  + +    + S  +  D   A  +   M+   F P   +   
Sbjct: 193 YDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLVLRKMQDAGFVPWDFTFNS 252

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           +V+   + G  ++A    D ++  G K       +++  Y  +  + KAL++  E  +DG
Sbjct: 253 VVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQREVRKALDIFEETLRDG 312

Query: 463 FEPGPATYTVLV 474
             P   TYTVL+
Sbjct: 313 LVPTDVTYTVLI 324


>gi|357454999|ref|XP_003597780.1| Beta-D-galactosidase [Medicago truncatula]
 gi|357455013|ref|XP_003597787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355486828|gb|AES68031.1| Beta-D-galactosidase [Medicago truncatula]
 gi|355486835|gb|AES68038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 101/415 (24%), Positives = 174/415 (41%), Gaps = 29/415 (6%)

Query: 170 EKIHE-RGEMILPEEPKPITGKCKLITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWIN 227
           EK+HE   EM       P T     +      L +++    L  E KE  LQP+   +  
Sbjct: 212 EKVHELYNEMCSEGHCFPDTVTYSALISAFGKLNRDDSAVRLFDEMKENGLQPTAKIYTT 271

Query: 228 LLDRLREQNTQLYFKVAELVLSEESFQ-----------TNVRDYSKLIDAHAKENCLEDA 276
           L+         +YFK+ ++   EE+               V  Y++LI    K   +EDA
Sbjct: 272 LMG--------IYFKLGKV---EEALNLVHEMRMRRCVPTVYTYTELIRGLGKSGRVEDA 320

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
             + K M ++G  PD+V    L+++  ++  L  A E FE +R     P+   YN++I +
Sbjct: 321 YGVYKNMLKDGCKPDVVLMNNLINILGRSDRLKEAVELFEEMRLLNCTPNVVTYNTIIKS 380

Query: 337 -YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
            + +   P    S ++ M   G+  S   Y  L+  F +   V  A  +   M  + F P
Sbjct: 381 LFEDKAPPSEASSWLERMKKDGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPP 440

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
              +   L+ + G+A   + A   F  +         R  A MI  +GK    ++A+ L 
Sbjct: 441 CPAAYCSLINSLGKAKRYEAANELFQELKENCGSSSVRVYAVMIKHFGKCGRFNEAMGLF 500

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
            E++K G  P    Y  L+  + R  +++EA  L   + E G  P       + +  AR 
Sbjct: 501 NEMKKLGCIPDVYAYNALITGMVRADMMDEAFSLFRTMEENGCNPDINSHNIILNGLART 560

Query: 516 GIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
           G  K+A++   F + K   + PD   +  ++  L   G  ++A ++   M ++GF
Sbjct: 561 GGPKRAMEM--FAKMKSSTIKPDAVSYNTVLGCLSRAGLFEEATKLMKEMNSKGF 613



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 117/260 (45%), Gaps = 2/260 (0%)

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQ-PDKKVYNSMIMAYVNAGQPKLGMS 348
           P   T   ++ M  + G+ ++  E +  + S G   PD   Y+++I A+    +    + 
Sbjct: 193 PTAGTYNSVILMLMQEGHHEKVHELYNEMCSEGHCFPDTVTYSALISAFGKLNRDDSAVR 252

Query: 349 LVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYG 408
           L D M  +G++ + +IY  L+  + + G V  A  + + MR+    PT+ + T L+   G
Sbjct: 253 LFDEMKENGLQPTAKIYTTLMGIYFKLGKVEEALNLVHEMRMRRCVPTVYTYTELIRGLG 312

Query: 409 QAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPA 468
           ++G  + A   +  M++ G KPD     ++I   G+ + L +A+ L  E+      P   
Sbjct: 313 KSGRVEDAYGVYKNMLKDGCKPDVVLMNNLINILGRSDRLKEAVELFEEMRLLNCTPNVV 372

Query: 469 TYTVLVDWLGRLQL-INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGF 527
           TY  ++  L   +   +EA   L ++ + G  P       L D + +    +KAL  L  
Sbjct: 373 TYNTIIKSLFEDKAPPSEASSWLERMKKDGVVPSSFTYSILIDGFCKTNRVEKALLLLEE 432

Query: 528 LEAKKEQMGPDDFERIINGL 547
           ++ K     P  +  +IN L
Sbjct: 433 MDEKGFPPCPAAYCSLINSL 452



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 95/221 (42%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS LID   K N +E A  +L++M+E G  P       L++   KA   + A E F+ L+
Sbjct: 410 YSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINSLGKAKRYEAANELFQELK 469

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
            +      +VY  MI  +   G+    M L + M   G       Y AL+    +   + 
Sbjct: 470 ENCGSSSVRVYAVMIKHFGKCGRFNEAMGLFNEMKKLGCIPDVYAYNALITGMVRADMMD 529

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  +   M      P + S  +++    + G P +A   F  M     KPD     +++
Sbjct: 530 EAFSLFRTMEENGCNPDINSHNIILNGLARTGGPKRAMEMFAKMKSSTIKPDAVSYNTVL 589

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
               +  L ++A  L+ E+   GFE    TY+ +++ +G++
Sbjct: 590 GCLSRAGLFEEATKLMKEMNSKGFEYDLITYSSILEAVGKV 630



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 72/163 (44%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L E    ++VR Y+ +I    K     +A  +  +M + G +PD+     L+    +A  
Sbjct: 468 LKENCGSSSVRVYAVMIKHFGKCGRFNEAMGLFNEMKKLGCIPDVYAYNALITGMVRADM 527

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D A   F ++  +G  PD   +N ++      G PK  M +   M +S I+     Y  
Sbjct: 528 MDEAFSLFRTMEENGCNPDINSHNIILNGLARTGGPKRAMEMFAKMKSSTIKPDAVSYNT 587

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410
           +L   ++ G    A ++   M  + F+  L + + ++EA G+ 
Sbjct: 588 VLGCLSRAGLFEEATKLMKEMNSKGFEYDLITYSSILEAVGKV 630



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 62/128 (48%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ LI    + + +++A  + + M ENG  PDI +  ++++  ++ G   RA E F
Sbjct: 511 DVYAYNALITGMVRADMMDEAFSLFRTMEENGCNPDINSHNIILNGLARTGGPKRAMEMF 570

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             ++S   +PD   YN+++     AG  +    L+  M + G E     Y ++L +  + 
Sbjct: 571 AKMKSSTIKPDAVSYNTVLGCLSRAGLFEEATKLMKEMNSKGFEYDLITYSSILEAVGKV 630

Query: 376 GDVRGAGQ 383
            + R   +
Sbjct: 631 DEDRNMAE 638


>gi|224058846|ref|XP_002299640.1| predicted protein [Populus trichocarpa]
 gi|222846898|gb|EEE84445.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 106/411 (25%), Positives = 176/411 (42%), Gaps = 22/411 (5%)

Query: 170 EKIHE-RGEMILPEEPKPITGKCKLITDKILSLEKEEDPSPLLAEWK-ELLQPSRIDWIN 227
           EKIHE   EM    +  P T    ++    + L +++    L  E K   L P+   +  
Sbjct: 183 EKIHELYHEMCNEGDCFPDTMTYSVLVSAFVKLGRDDYAIRLFDEMKANGLHPTAKIYTT 242

Query: 228 LLDRLREQNTQLYFKVAE-----LV--LSEESFQTNVRDYSKLIDAHAKENCLEDAERIL 280
           LL         +YFK  +     LV  + ++     V  Y++LI    K   +EDA  + 
Sbjct: 243 LL--------AIYFKSGDEKALGLVQEMKDKGCAPTVFTYTELIKGLGKSGRVEDAYSVF 294

Query: 281 KKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNA 340
             M ++G  PD+V    L++++ KAG L+ A + F+ +RS    P+   YN++I A   +
Sbjct: 295 LNMLKDGCKPDVVLINNLINIFGKAGRLEDALKLFDQMRSLKCAPNVVTYNTVIKALFES 354

Query: 341 GQPKL-GMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLES 399
             P     S  + M  +G+  S   Y  L+  F +   V  A  +   M  + F P   +
Sbjct: 355 KAPASEAASWFEKMKANGVTPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAA 414

Query: 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELE 459
              L+ A G+A   + A   F  +     +   R  A MI   GK     +A++L  E++
Sbjct: 415 YCSLINALGKAKRYEAANELFLELKENCGRSSARIYAVMIKNLGKCGRPSEAVDLFNEMK 474

Query: 460 KDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEK 519
           K G  P    Y  L+  L R  +I EA   L  + E G  P       + +  AR G  +
Sbjct: 475 KIGCNPDVYAYNALMSGLVRAGMIEEAFSALRTMEENGCTPDLNSHNIILNGLARTGRPE 534

Query: 520 KALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
           +A +   F++ K   + PD   +  I+  L   G  ++A ++   M ++GF
Sbjct: 535 QATEM--FMKMKDSLIKPDAVSYNTILGSLSRSGMFEEAAKLMREMGSRGF 583



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 97/221 (43%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS LID   K N +E A  +L++M+E G  P       L++   KA   + A E F  L+
Sbjct: 380 YSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFLELK 439

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
            +  +   ++Y  MI      G+P   + L + M   G       Y AL+    + G + 
Sbjct: 440 ENCGRSSARIYAVMIKNLGKCGRPSEAVDLFNEMKKIGCNPDVYAYNALMSGLVRAGMIE 499

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A      M      P L S  +++    + G P+QA   F  M     KPD     +++
Sbjct: 500 EAFSALRTMEENGCTPDLNSHNIILNGLARTGRPEQATEMFMKMKDSLIKPDAVSYNTIL 559

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
            +  +  + ++A  L+ E+   GFE    TY+ +++ +G++
Sbjct: 560 GSLSRSGMFEEAAKLMREMGSRGFEYDHITYSSILEAVGKV 600



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 68/287 (23%), Positives = 117/287 (40%), Gaps = 38/287 (13%)

Query: 298 LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM---------------------- 335
           +V +  KA  +++A   F  ++S   +P    YNSMI+                      
Sbjct: 137 VVKILGKAKMVNKALSVFYQIKSRKCKPTASTYNSMILMLMQEGHHEKIHELYHEMCNEG 196

Query: 336 --------------AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGA 381
                         A+V  G+    + L D M  +G+  + +IY  LL  + + GD +  
Sbjct: 197 DCFPDTMTYSVLVSAFVKLGRDDYAIRLFDEMKANGLHPTAKIYTTLLAIYFKSGDEKAL 256

Query: 382 GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441
           G +   M+ +   PT+ + T L++  G++G  + A S F  M++ G KPD     ++I  
Sbjct: 257 GLVQE-MKDKGCAPTVFTYTELIKGLGKSGRVEDAYSVFLNMLKDGCKPDVVLINNLINI 315

Query: 442 YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL-INEAEQLLGKISELGEAP 500
           +GK   L+ AL L  ++      P   TY  ++  L   +   +EA     K+   G  P
Sbjct: 316 FGKAGRLEDALKLFDQMRSLKCAPNVVTYNTVIKALFESKAPASEAASWFEKMKANGVTP 375

Query: 501 PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
                  L D + +    +KAL  L  ++ K     P  +  +IN L
Sbjct: 376 SSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINAL 422



 Score = 45.4 bits (106), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 37/170 (21%), Positives = 74/170 (43%)

Query: 246 LVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKA 305
           L L E   +++ R Y+ +I    K     +A  +  +M + G  PD+     L+    +A
Sbjct: 436 LELKENCGRSSARIYAVMIKNLGKCGRPSEAVDLFNEMKKIGCNPDVYAYNALMSGLVRA 495

Query: 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
           G ++ A  A  ++  +G  PD   +N ++      G+P+    +   M  S I+     Y
Sbjct: 496 GMIEEAFSALRTMEENGCTPDLNSHNIILNGLARTGRPEQATEMFMKMKDSLIKPDAVSY 555

Query: 366 LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ 415
             +L S ++ G    A ++   M    F+    + + ++EA G+  + D+
Sbjct: 556 NTILGSLSRSGMFEEAAKLMREMGSRGFEYDHITYSSILEAVGKVDEDDE 605


>gi|224031359|gb|ACN34755.1| unknown [Zea mays]
          Length = 504

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 115/245 (46%), Gaps = 4/245 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS ++D +A+    E+   +  +   +G  PD V   VL  M+ +AG+ D  +  F+ +R
Sbjct: 49  YSAVLDVYAQLGMKEEVLALFDRARGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFKEMR 108

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +P+  VYN+++ A    G+P L  +L + MI  G+E +     AL + + +    R
Sbjct: 109 EVGIKPNIFVYNALLEALGKTGKPGLARNLFEEMIDQGVEPNARTLTALAKIYGRARWGR 168

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM----IRLGHKPDDRCT 435
            A Q+ + MR  +       C  L+      G   +A   F+ M     R   KPD    
Sbjct: 169 DALQLWDKMRELKLPADSILCNTLLSMCADVGLVAEAEQLFNEMKDPECRDVPKPDKWSY 228

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            +MI  YG     D AL L  E+ K G EP   +YT+++  LG+ + I +A ++L    E
Sbjct: 229 TAMINIYGSNGDTDSALQLFAEMLKGGIEPNIMSYTIVIQCLGKARRIQQAVEVLESGLE 288

Query: 496 LGEAP 500
            G  P
Sbjct: 289 KGLKP 293



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 133/309 (43%), Gaps = 17/309 (5%)

Query: 283 MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS-HGFQPDKKVYNSMIMAYVNAG 341
           M + G+  D +T + L+    +     +A E FE + +  G  PD+  Y++++  Y   G
Sbjct: 1   MLDAGVPLDNITYSTLITAARRCRQFAKAVEWFERMYAADGVLPDEVTYSAVLDVYAQLG 60

Query: 342 QPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCT 401
             +  ++L D    SG +     +  L + F + GD  G   +   MR    +P +    
Sbjct: 61  MKEEVLALFDRARGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFKEMREVGIKPNIFVYN 120

Query: 402 LLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD 461
            L+EA G+ G P  AR+ F+ MI  G +P+ R   ++   YG+      AL L  ++ + 
Sbjct: 121 ALLEALGKTGKPGLARNLFEEMIDQGVEPNARTLTALAKIYGRARWGRDALQLWDKMREL 180

Query: 462 GFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS--ELGEAP-PFKIQ-VSLCDMYARAGI 517
                      L+     + L+ EAEQL  ++   E  + P P K    ++ ++Y   G 
Sbjct: 181 KLPADSILCNTLLSMCADVGLVAEAEQLFNEMKDPECRDVPKPDKWSYTAMINIYGSNGD 240

Query: 518 EKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEA------QGFAAS 571
              ALQ   F E  K  + P+    I++  +    L  A+R+   +E       +G    
Sbjct: 241 TDSALQL--FAEMLKGGIEPN----IMSYTIVIQCLGKARRIQQAVEVLESGLEKGLKPD 294

Query: 572 ERLKVALIS 580
           +RL   L+S
Sbjct: 295 DRLCGCLLS 303



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 73/171 (42%), Gaps = 23/171 (13%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +I+ +      + A ++  +M + GI P+I++ T+++    KA  + +A E  ES  
Sbjct: 228 YTAMINIYGSNGDTDSALQLFAEMLKGGIEPNIMSYTIVIQCLGKARRIQQAVEVLESGL 287

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +PD ++   ++     +   ++ M L      S +E+  +  + L+R       V 
Sbjct: 288 EKGLKPDDRLCGCLLSVIALSSGEEMEMVL------SSLEKVNQNLVKLIR-------VL 334

Query: 380 GAGQITNIMRIEEFQPTLES---------CTLLVEAYGQAGDPDQ-ARSNF 420
           G  Q+      EE +  L S         C  L++     G P Q AR  F
Sbjct: 335 GDAQVGGDDITEELKSVLNSAAPEVRRPYCNCLIDVCRNHGFPPQRAREVF 385


>gi|359481971|ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Vitis vinifera]
          Length = 819

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 89/379 (23%), Positives = 164/379 (43%), Gaps = 26/379 (6%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRD-------------YSKLI 264
           + P+RI +  L+D         Y KV +L   EE+F  N+R+             ++ L+
Sbjct: 248 VAPNRITYNTLIDG--------YCKVGQL---EEAF--NIRERMKVENVEPTIITFNSLL 294

Query: 265 DAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQ 324
           +   +   +E+A+R+L++M   G VPD  T T L   + K GN+D +    E     G Q
Sbjct: 295 NGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASITLSEEAVRKGVQ 354

Query: 325 PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQI 384
                 + ++ A    G  +    ++   + +G+      +  ++  + Q GD+  A   
Sbjct: 355 ILDYTCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYCQVGDINKAYTT 414

Query: 385 TNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGK 444
              M     +P   +   LV+ + +  + ++A      M+  G  P+     ++I  YG+
Sbjct: 415 IEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGR 474

Query: 445 KNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKI 504
             L D+   +L E+EK G +P   +Y  L++ L +   I EAE +LG +   G  P  +I
Sbjct: 475 SCLFDRCFQILEEMEKKGLKPNVISYGCLINCLCKDANILEAEVILGDMVHRGVVPNAQI 534

Query: 505 QVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLME 564
              L D    AG  K A +    + A++       +  +INGL   G + +A+ +   + 
Sbjct: 535 YNMLIDGSCIAGKLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGKVMEAENLASEIT 594

Query: 565 AQGFAASERLKVALISSQT 583
            +G +       +LIS  +
Sbjct: 595 RKGLSFDVITYNSLISGYS 613



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 93/390 (23%), Positives = 157/390 (40%), Gaps = 48/390 (12%)

Query: 220 PSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVR--DY--SKLIDAHAKENCLE 274
           P R  +  L D  L+  N       A + LSEE+ +  V+  DY  S L++A  KE  +E
Sbjct: 320 PDRFTYTTLFDGHLKCGNVD-----ASITLSEEAVRKGVQILDYTCSILLNALCKEGNME 374

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
            AE +LKK  ENG+ P  V    +V+ Y + G++++A    E + + G +P+   YNS++
Sbjct: 375 KAEEVLKKFLENGLAPVGVFFNTIVNGYCQVGDINKAYTTIEKMEAVGLRPNHVTYNSLV 434

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
             +      +     +  M+  G+  + E Y  L+  + +        QI   M  +  +
Sbjct: 435 KKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCFQILEEMEKKGLK 494

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P + S   L+    +  +  +A      M+  G  P+ +    +I        L  A   
Sbjct: 495 PNVISYGCLINCLCKDANILEAEVILGDMVHRGVVPNAQIYNMLIDGSCIAGKLKDAFRF 554

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
             E+      P   TY +L++ L +   + EAE L  +I+  G +       SL   Y+ 
Sbjct: 555 FDEMVAREIVPTLVTYNILINGLCKKGKVMEAENLASEITRKGLSFDVITYNSLISGYSS 614

Query: 515 AGIEKKALQALGFLEAKKEQMGP--DDFERIINGL------------------------- 547
           AG  +KAL+   +   KK  + P  + + R+I G                          
Sbjct: 615 AGNVQKALEL--YETMKKSGIKPTLNTYHRLIAGCGKEGLVLVEKIYQEMLQMNLVPDRV 672

Query: 548 ---------LAGGFLQDAQRVHGLMEAQGF 568
                    +  G +Q A  +H  MEAQG 
Sbjct: 673 IYNALIHCYVEHGDVQKACSLHSAMEAQGI 702



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 70/320 (21%), Positives = 140/320 (43%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +I    KE  ++DAE++  +M +  + P+ +T   L+  Y K G L+ A    E ++
Sbjct: 220 YNVVIGGLCKEKRMKDAEKLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMK 279

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
               +P    +NS++     A   +    +++ M   G       Y  L     +CG+V 
Sbjct: 280 VENVEPTIITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVD 339

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            +  ++     +  Q    +C++L+ A  + G+ ++A       +  G  P      +++
Sbjct: 340 ASITLSEEAVRKGVQILDYTCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIV 399

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             Y +   ++KA   + ++E  G  P   TY  LV     ++ + EAE+ + K+ E G  
Sbjct: 400 NGYCQVGDINKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVL 459

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P  +   +L D Y R+ +  +  Q L  +E K  +     +  +IN L     + +A+ +
Sbjct: 460 PNVETYNTLIDGYGRSCLFDRCFQILEEMEKKGLKPNVISYGCLINCLCKDANILEAEVI 519

Query: 560 HGLMEAQGFAASERLKVALI 579
            G M  +G   + ++   LI
Sbjct: 520 LGDMVHRGVVPNAQIYNMLI 539



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 128/298 (42%), Gaps = 9/298 (3%)

Query: 215 KELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           K+ L+P+ I +  L++ L +    L  +V    +       N + Y+ LID       L+
Sbjct: 490 KKGLKPNVISYGCLINCLCKDANILEAEVILGDMVHRGVVPNAQIYNMLIDGSCIAGKLK 549

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           DA R   +M    IVP +VT  +L++   K G +  A+     +   G   D   YNS+I
Sbjct: 550 DAFRFFDEMVAREIVPTLVTYNILINGLCKKGKVMEAENLASEITRKGLSFDVITYNSLI 609

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD--VRGAGQITNIMRIEE 392
             Y +AG  +  + L + M  SGI+ +   Y  L+   A CG   +    +I   M    
Sbjct: 610 SGYSSAGNVQKALELYETMKKSGIKPTLNTYHRLI---AGCGKEGLVLVEKIYQEMLQMN 666

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P       L+  Y + GD  +A S    M   G +PD      +I  + K+  + K  
Sbjct: 667 LVPDRVIYNALIHCYVEHGDVQKACSLHSAMEAQGIQPDKMTYNCLILGHFKEGRMHKVK 726

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCD 510
           NL+ +++  G  P   TY +L+    +L+  + A     ++ E G  P     VS+CD
Sbjct: 727 NLVNDMKIRGLIPKTETYDILIVGHCKLKDFDGAYVWYREMFENGFTP----SVSICD 780



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 102/222 (45%), Gaps = 9/222 (4%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI+   K+  + +AE +  ++   G+  D++T   L+  YS AGN+ +A E +E+++
Sbjct: 570 YNILINGLCKKGKVMEAENLASEITRKGLSFDVITYNSLISGYSSAGNVQKALELYETMK 629

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDM----MITSGIERSEEIYLALLRSFAQC 375
             G +P    Y+ +I     AG  K G+ LV+     M+   +     IY AL+  + + 
Sbjct: 630 KSGIKPTLNTYHRLI-----AGCGKEGLVLVEKIYQEMLQMNLVPDRVIYNALIHCYVEH 684

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           GDV+ A  + + M  +  QP   +   L+  + + G   + ++  + M   G  P     
Sbjct: 685 GDVQKACSLHSAMEAQGIQPDKMTYNCLILGHFKEGRMHKVKNLVNDMKIRGLIPKTETY 744

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
             +I  + K    D A     E+ ++GF P  +    L+  L
Sbjct: 745 DILIVGHCKLKDFDGAYVWYREMFENGFTPSVSICDNLITGL 786



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 72/335 (21%), Positives = 134/335 (40%), Gaps = 40/335 (11%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           L+P+ + + +L+ +  E       +     + E+    NV  Y+ LID + +    +   
Sbjct: 423 LRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCF 482

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
           +IL++M + G+ P++++   L++   K  N+  A+     +   G  P+ ++YN +I   
Sbjct: 483 QILEEMEKKGLKPNVISYGCLINCLCKDANILEAEVILGDMVHRGVVPNAQIYNMLIDGS 542

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
             AG+ K      D M+                                     E  PTL
Sbjct: 543 CIAGKLKDAFRFFDEMVA-----------------------------------REIVPTL 567

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
            +  +L+    + G   +A +    + R G   D     S+I+ Y     + KAL L   
Sbjct: 568 VTYNILINGLCKKGKVMEAENLASEITRKGLSFDVITYNSLISGYSSAGNVQKALELYET 627

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI 517
           ++K G +P   TY  L+   G+  L+   E++  ++ ++   P   I  +L   Y   G 
Sbjct: 628 MKKSGIKPTLNTYHRLIAGCGKEGLV-LVEKIYQEMLQMNLVPDRVIYNALIHCYVEHGD 686

Query: 518 EKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
            +KA      +EA+  Q  PD  +   N L+ G F
Sbjct: 687 VQKACSLHSAMEAQGIQ--PD--KMTYNCLILGHF 717



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 113/257 (43%)

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           ED  ++  ++ E+G+ PD       +    K G+L RA E    ++  G  P   VYN +
Sbjct: 164 EDTLQLFSEIVESGLRPDQFMYGKAIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYNVV 223

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           I       + K    L D M+   +  +   Y  L+  + + G +  A  I   M++E  
Sbjct: 224 IGGLCKEKRMKDAEKLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVENV 283

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
           +PT+ +   L+    +A   ++A+   + M   G  PD     ++   + K   +D ++ 
Sbjct: 284 EPTIITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASIT 343

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
           L  E  + G +    T ++L++ L +   + +AE++L K  E G AP      ++ + Y 
Sbjct: 344 LSEEAVRKGVQILDYTCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYC 403

Query: 514 RAGIEKKALQALGFLEA 530
           + G   KA   +  +EA
Sbjct: 404 QVGDINKAYTTIEKMEA 420



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 4/170 (2%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + +   +  +  Y +LI    KE  L   E+I ++M +  +VPD V    L+H Y + G+
Sbjct: 628 MKKSGIKPTLNTYHRLIAGCGKEG-LVLVEKIYQEMLQMNLVPDRVIYNALIHCYVEHGD 686

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           + +A     ++ + G QPDK  YN +I+ +   G+     +LV+ M   G+    E Y  
Sbjct: 687 VQKACSLHSAMEAQGIQPDKMTYNCLILGHFKEGRMHKVKNLVNDMKIRGLIPKTETYDI 746

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAY---GQAGDPD 414
           L+    +  D  GA      M    F P++  C  L+      G++ D D
Sbjct: 747 LIVGHCKLKDFDGAYVWYREMFENGFTPSVSICDNLITGLREEGRSHDAD 796



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 87/192 (45%)

Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
           V  + ++  +M+ +   P++ S  L +E+       +     F  ++  G +PD      
Sbjct: 128 VSESAELYMLMKKDGVLPSVASLNLFLESLVSTKRYEDTLQLFSEIVESGLRPDQFMYGK 187

Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
            I A  K   L +A+ L+  +++ G  PG   Y V++  L + + + +AE+L  ++ +  
Sbjct: 188 AIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDAEKLFDEMLDRR 247

Query: 498 EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQ 557
            AP      +L D Y + G  ++A      ++ +  +     F  ++NGL     +++AQ
Sbjct: 248 VAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVENVEPTIITFNSLLNGLCRAQMMEEAQ 307

Query: 558 RVHGLMEAQGFA 569
           RV   ME  GF 
Sbjct: 308 RVLEEMEVYGFV 319



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/222 (19%), Positives = 101/222 (45%)

Query: 295 STVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMI 354
           S +L+ + S++  +  + E +  ++  G  P     N  + + V+  + +  + L   ++
Sbjct: 115 SDMLLSICSESKMVSESAELYMLMKKDGVLPSVASLNLFLESLVSTKRYEDTLQLFSEIV 174

Query: 355 TSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPD 414
            SG+   + +Y   +++  + GD++ A ++   M+     P +    +++    +     
Sbjct: 175 ESGLRPDQFMYGKAIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMK 234

Query: 415 QARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
            A   FD M+     P+     ++I  Y K   L++A N+   ++ +  EP   T+  L+
Sbjct: 235 DAEKLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVENVEPTIITFNSLL 294

Query: 475 DWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
           + L R Q++ EA+++L ++   G  P      +L D + + G
Sbjct: 295 NGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCG 336


>gi|296083214|emb|CBI22850.3| unnamed protein product [Vitis vinifera]
          Length = 724

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/319 (22%), Positives = 141/319 (44%), Gaps = 6/319 (1%)

Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311
           SF  +V  Y+ LI+   KE   E+A ++L +M   GI P++++ T +++  S AGN++ +
Sbjct: 241 SFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELS 300

Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
                 + + G  P+   + S+I  +   G     +   D MI  G+  +   Y AL+  
Sbjct: 301 LAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHG 360

Query: 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
                 +  A  + N M I    P + + + L++ Y +AGD D A   +++MI  G  P+
Sbjct: 361 LCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPN 420

Query: 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
                 M+    + ++ ++A  L+  ++ +   P   T+   +  L     ++ A ++  
Sbjct: 421 VVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFD 480

Query: 492 KISELGEAPPFKIQVSLCDMYARAGIEKKALQALGF---LEAKKEQMGPDDFERIINGLL 548
           ++   G  P       L D   +   +++  +A G    +E +  ++    +  II G  
Sbjct: 481 QMGNSGCFPNTTTYNELLDSLLK---DRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYC 537

Query: 549 AGGFLQDAQRVHGLMEAQG 567
             G L +A  + G M  +G
Sbjct: 538 CAGMLGEALELLGKMVVRG 556



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/331 (21%), Positives = 133/331 (40%), Gaps = 2/331 (0%)

Query: 218 LQPSRIDWINLLDRLREQ-NTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           + P+ I +  +++ L +  N +L   V   + +      N+  ++ LI     +    +A
Sbjct: 277 IDPNVISYTTIINALSDAGNVELSLAVLAKMFARGC-SPNLHTFTSLIKGFFLKGGSHEA 335

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
                +M   G+VP++V    L+H      +L  A   F  +  +G  P+ + Y+++I  
Sbjct: 336 LDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDG 395

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           Y  AG       + + MIT G   +   Y  ++    +      A  +   M++E   P 
Sbjct: 396 YAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPN 455

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
             +    ++    +G  D A   FD M   G  P+      ++ +  K     +A  L+ 
Sbjct: 456 TVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVK 515

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
           ++E  G E    TY  ++       ++ EA +LLGK+   G  P       + D Y + G
Sbjct: 516 DMEHRGIELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQG 575

Query: 517 IEKKALQALGFLEAKKEQMGPDDFERIINGL 547
               A+Q +  L A K       +  +I+G+
Sbjct: 576 KVNIAIQLMDRLSAGKWHPDIIAYTSLISGI 606



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 72/341 (21%), Positives = 137/341 (40%), Gaps = 30/341 (8%)

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           V+ Y+ ++DA   EN  +    I   M ++G+ P++ T  +L+    K   +D A +   
Sbjct: 146 VKIYNHILDALLDENRFQMINPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLV 205

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPK----LGMS------------------------ 348
            + S G  PD+  Y ++I +    G+ K    L MS                        
Sbjct: 206 EMSSKGCDPDEVSYTTLISSLCKLGKVKEARELAMSFTPSVPVYNALINGVCKEYTFEEA 265

Query: 349 --LVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA 406
             L+D M+  GI+ +   Y  ++ + +  G+V  +  +   M      P L + T L++ 
Sbjct: 266 FQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKG 325

Query: 407 YGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG 466
           +   G   +A   +D MIR G  P+     +++     K  L  A+++  ++E +G  P 
Sbjct: 326 FFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPN 385

Query: 467 PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALG 526
             TY+ L+D   +   ++ A ++   +   G  P       + D+  R  +  +A   + 
Sbjct: 386 VRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIE 445

Query: 527 FLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
            ++ +        F   I GL   G +  A +V   M   G
Sbjct: 446 NMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSG 486



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 103/245 (42%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NVR YS LID +AK   L+ A  +   M  +G  P++V  T +V +  +    ++A    
Sbjct: 385 NVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLI 444

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E+++     P+   +N+ I     +G+    + + D M  SG   +   Y  LL S  + 
Sbjct: 445 ENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKD 504

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
                A  +   M     +  L +   ++  Y  AG   +A      M+  G KPD    
Sbjct: 505 RRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITV 564

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +I AY K+  ++ A+ L+  L    + P    YT L+  +     + EA   L ++  
Sbjct: 565 NIVIDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLS 624

Query: 496 LGEAP 500
            G +P
Sbjct: 625 EGISP 629



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 79/357 (22%), Positives = 159/357 (44%), Gaps = 12/357 (3%)

Query: 227 NLLDRLR-EQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNE 285
           ++L RL+ E +  L  +  + + + +SF+     Y  +I+  A E  ++  + +L++M  
Sbjct: 45  DVLKRLKHEHDITLALEYFKSIANSKSFKHTPLTYQMMIEKLASEREMDCVQYLLQQMKL 104

Query: 286 NGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKL 345
            GI         ++  Y +AG+ ++A + F  ++    +P  K+YN ++ A ++  + ++
Sbjct: 105 EGISCSEDLFISVIGSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQM 164

Query: 346 GMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVE 405
              +   M   G+E +   Y  LL++  +   V GA ++   M  +   P   S T L+ 
Sbjct: 165 INPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLIS 224

Query: 406 AYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
           +  + G   +AR      + +   P      ++I    K+   ++A  LL E+   G +P
Sbjct: 225 SLCKLGKVKEARE-----LAMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDP 279

Query: 466 GPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
              +YT +++ L     +  +  +L K+   G +P      SL   +   G    + +AL
Sbjct: 280 NVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKG---GSHEAL 336

Query: 526 GFLE-AKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
            F +   +E + P+   +  +++GL +   L DA  V   ME  G   + R   ALI
Sbjct: 337 DFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALI 393


>gi|297832604|ref|XP_002884184.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330024|gb|EFH60443.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 829

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 95/433 (21%), Positives = 185/433 (42%), Gaps = 52/433 (12%)

Query: 190 KCKLITDKILSLEKEEDPS------PLLAEWKELLQPS---RIDW--INLLDRLREQNTQ 238
           K +L+T  ++SL K  D S        L EW  L   S   ++D   I +L R+  + +Q
Sbjct: 138 KSELLTTDLVSLVKGLDDSGHWERAVFLFEWLVLSSNSGALKLDHHVIEILVRILGRESQ 197

Query: 239 LYFKVAELVLSE---ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTS 295
             + VA  +L +   + +  +VR Y+ ++ A+++    E A  + ++M E G  P +VT 
Sbjct: 198 --YSVAAKLLDKIPLQDYMLDVRAYTTILHAYSRTGKYEKAINLFERMKEMGPSPTLVTY 255

Query: 296 TVLVHMYSKAGN------------------------------------LDRAKEAFESLR 319
            V++ ++ K G                                     L  AK+ F  L+
Sbjct: 256 NVILDVFGKMGRSWRKILGVLEEMRSKGLKFDEFTCSTVLSACAREGLLREAKDFFAELK 315

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           S G++P    YN+++  +  AG     +S++  M  +        Y  L+ ++A+ G  +
Sbjct: 316 SCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENNCPADSVTYNELVAAYARAGFSK 375

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  +  +M  +   P   + T +++AYG+AG  D+A   F  M   G  P+     +++
Sbjct: 376 EAAVVIEMMTQKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVL 435

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
           +  GKK+  ++ + +L +++ +G  P  AT+  ++   G   +     ++  ++   G  
Sbjct: 436 SMLGKKSRSNEMIKMLCDMKSNGCFPNRATWNTILALCGNKGMDKFVNRVFREMKSCGFE 495

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P      +L   Y R G E  A +  G +           +  ++N L   G  +  + V
Sbjct: 496 PDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENV 555

Query: 560 HGLMEAQGFAASE 572
              M+++GF  +E
Sbjct: 556 ISDMKSKGFKPTE 568



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 150/359 (41%), Gaps = 41/359 (11%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK-- 304
           +++++    N   Y+ +IDA+ K    ++A ++   M E G VP+  T   ++ M  K  
Sbjct: 383 MMTQKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSMLGKKS 442

Query: 305 ------------------------------AGN--LDR-AKEAFESLRSHGFQPDKKVYN 331
                                          GN  +D+     F  ++S GF+PD+  +N
Sbjct: 443 RSNEMIKMLCDMKSNGCFPNRATWNTILALCGNKGMDKFVNRVFREMKSCGFEPDRDTFN 502

Query: 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391
           ++I AY   G       +   M  +G       Y ALL + A+ GD R    + + M+ +
Sbjct: 503 TLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSK 562

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK-PDDRCTASMIAAYGKKNLLDK 450
            F+PT  S +L+++ Y + G+        +  I  G   P      +++ A  K   L  
Sbjct: 563 GFKPTETSYSLMLQCYAKGGN-YLGIERIEEGINEGQIFPSWMLLRTLLLANFKCRALAG 621

Query: 451 ALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCD 510
           +       +K G++P    +  ++    R  + ++AE +L  I E G  P      SL D
Sbjct: 622 SERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILQSIHEDGLNPDLVTYNSLMD 681

Query: 511 MYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQG 567
           MY R G   KA + L  LE  K Q+ PD   +  +I G    G +Q+A R+   M  +G
Sbjct: 682 MYVRRGECWKAEEILKTLE--KSQLKPDLVSYNTVIKGFCRKGLMQEAVRMLSEMTERG 738



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 104/442 (23%), Positives = 174/442 (39%), Gaps = 54/442 (12%)

Query: 189 GKCKLITDK--ILSLEKEEDPSPLLAEW-----KELLQPSRIDWINLLDRLREQNTQLYF 241
           G  KL+  K  +L     E P P L+ +      ELL    +  +  LD        + F
Sbjct: 106 GSLKLLCKKEVVLVNSIVEQPLPRLSSFFDSVKSELLTTDLVSLVKGLDDSGHWERAV-F 164

Query: 242 KVAELVLSEESFQTNVRDY--SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLV 299
               LVLS  S    +  +    L+    +E+    A ++L K+     + D+   T ++
Sbjct: 165 LFEWLVLSSNSGALKLDHHVIEILVRILGRESQYSVAAKLLDKIPLQDYMLDVRAYTTIL 224

Query: 300 HMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP--KLGMSLVDM----- 352
           H YS+ G  ++A   FE ++  G  P    YN ++  +   G+   K+   L +M     
Sbjct: 225 HAYSRTGKYEKAINLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLEEMRSKGL 284

Query: 353 -----------------------------MITSGIERSEEIYLALLRSFAQCGDVRGAGQ 383
                                        + + G E     Y ALL+ F + G    A  
Sbjct: 285 KFDEFTCSTVLSACAREGLLREAKDFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEA-- 342

Query: 384 ITNIMRIEEFQPTLESCTL--LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441
           ++ +  +EE     +S T   LV AY +AG   +A    + M + G  P+     ++I A
Sbjct: 343 LSVLKEMEENNCPADSVTYNELVAAYARAGFSKEAAVVIEMMTQKGVMPNAITYTTVIDA 402

Query: 442 YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
           YGK    D+AL L   +++ G  P   TY  ++  LG+    NE  ++L  +   G  P 
Sbjct: 403 YGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSMLGKKSRSNEMIKMLCDMKSNGCFPN 462

Query: 502 FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP--DDFERIINGLLAGGFLQDAQRV 559
                ++  +    G++K   +   F E K     P  D F  +I+     G   DA ++
Sbjct: 463 RATWNTILALCGNKGMDKFVNRV--FREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKM 520

Query: 560 HGLMEAQGFAASERLKVALISS 581
           +G M   GF A      AL+++
Sbjct: 521 YGEMTRAGFNACVTTYNALLNA 542



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/246 (19%), Positives = 103/246 (41%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +  + F+     YS ++  +AK       ERI + +NE  I P  +    L+    K   
Sbjct: 559 MKSKGFKPTETSYSLMLQCYAKGGNYLGIERIEEGINEGQIFPSWMLLRTLLLANFKCRA 618

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L  ++ AF   + HG++PD  ++NSM+  +           ++  +   G+      Y +
Sbjct: 619 LAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILQSIHEDGLNPDLVTYNS 678

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+  + + G+   A +I   +   + +P L S   +++ + + G   +A      M   G
Sbjct: 679 LMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRKGLMQEAVRMLSEMTERG 738

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            +P      + ++ Y    +  +  +++  + K+   P   T+ ++VD   R    +EA 
Sbjct: 739 IRPCIFTYNTFVSGYTAMGMYGEIEDVIECMAKNDCRPNELTFKMVVDGYCRAGKYSEAM 798

Query: 488 QLLGKI 493
             + KI
Sbjct: 799 DFVSKI 804



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 83/184 (45%), Gaps = 8/184 (4%)

Query: 241 FKVAELVLSEESF--------QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDI 292
           FK   L  SE +F        + ++  ++ ++    + N  + AE IL+ ++E+G+ PD+
Sbjct: 614 FKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILQSIHEDGLNPDL 673

Query: 293 VTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDM 352
           VT   L+ MY + G   +A+E  ++L     +PD   YN++I  +   G  +  + ++  
Sbjct: 674 VTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRKGLMQEAVRMLSE 733

Query: 353 MITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGD 412
           M   GI      Y   +  +   G       +   M   + +P   +  ++V+ Y +AG 
Sbjct: 734 MTERGIRPCIFTYNTFVSGYTAMGMYGEIEDVIECMAKNDCRPNELTFKMVVDGYCRAGK 793

Query: 413 PDQA 416
             +A
Sbjct: 794 YSEA 797



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/203 (18%), Positives = 91/203 (44%), Gaps = 2/203 (0%)

Query: 263 LIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG 322
           L+ A+ K   L  +ER      ++G  PD+V    ++ ++++    D+A+   +S+   G
Sbjct: 609 LLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILQSIHEDG 668

Query: 323 FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAG 382
             PD   YNS++  YV  G+      ++  +  S ++     Y  +++ F + G ++ A 
Sbjct: 669 LNPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRKGLMQEAV 728

Query: 383 QITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAY 442
           ++ + M     +P + +    V  Y   G   +     + M +   +P++     ++  Y
Sbjct: 729 RMLSEMTERGIRPCIFTYNTFVSGYTAMGMYGEIEDVIECMAKNDCRPNELTFKMVVDGY 788

Query: 443 GKKNLLDKALNLLLELEKDGFEP 465
            +     +A++ + +++   F+P
Sbjct: 789 CRAGKYSEAMDFVSKIKT--FDP 809


>gi|255660852|gb|ACU25595.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 418

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 107/216 (49%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           Q +V  YS LI+   KE  L++A  +  +M +NG+VP+ VT T L+H + K   +D A E
Sbjct: 203 QPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAME 262

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            ++ + S G  PD   YN++I      G+ K    L+D MI +G++  +  Y  L+    
Sbjct: 263 IYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDGSC 322

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           + GD+  A ++ N M  E  +    + T L+    + G    A      M+ +G KPD+ 
Sbjct: 323 KEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREGRASDAEKMLREMLSVGLKPDNG 382

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPAT 469
               +I  + KK     A  LL E+++DG  PG  T
Sbjct: 383 TYTMIINEFCKKRDSKTASKLLREMQRDGPLPGVVT 418



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/298 (21%), Positives = 123/298 (41%), Gaps = 53/298 (17%)

Query: 214 WKELLQ---PSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQT--------NVRDYSK 262
           +KE+L+   P+ + + N+L        Q + K  E+ L++  F          +V  ++ 
Sbjct: 124 YKEVLECGYPASLYFFNIL-------MQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNT 176

Query: 263 LIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG 322
           LI+ + K   L++  R+   M+ +G  PD+ T ++L++   K G LD A E F  +  +G
Sbjct: 177 LINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNG 236

Query: 323 FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAG 382
             P+   + ++I  +    +  L M +   M++ G+                        
Sbjct: 237 LVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGL------------------------ 272

Query: 383 QITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAY 442
                       P L +   L+    + G+  Q     D MI  G KPD     ++I   
Sbjct: 273 -----------SPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDGS 321

Query: 443 GKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
            K+  L+ AL L  ++ ++        YT L+  L R    ++AE++L ++  +G  P
Sbjct: 322 CKEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREGRASDAEKMLREMLSVGLKP 379



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 66/323 (20%), Positives = 137/323 (42%), Gaps = 11/323 (3%)

Query: 243 VAELVLSEESFQ-TNVRDYSKLIDAHAKENCLEDAERILKKMNENGI-VPDIVTSTVLVH 300
           V E +L  +  Q ++   +S L+ A+ +   + DA +  +   ++ I VP      VL H
Sbjct: 51  VFEAILETKGTQRSDFYVFSGLMIAYLESGFVRDAVQCFRLTKQHKIRVPFDTCRKVLEH 110

Query: 301 M----YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           +    Y K    D  KE  E     G+      +N ++  +   G+ +L  S+ D +   
Sbjct: 111 LMEFRYFKL-VWDFYKEVLEC----GYPASLYFFNILMQRFCKEGEMRLAQSVFDAITKW 165

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
           G+  S   +  L+  + + GD+    ++ + M     QP + + ++L+    + G  D+A
Sbjct: 166 GLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEA 225

Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476
              F+ M+  G  P+     ++I  + K   +D A+ +  ++   G  P   TY  L+  
Sbjct: 226 NELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYG 285

Query: 477 LGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG 536
           L +   + +   L+ ++   G  P      +L D   + G  + AL+    +  +  ++ 
Sbjct: 286 LCKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLD 345

Query: 537 PDDFERIINGLLAGGFLQDAQRV 559
              +  +I+ L   G   DA+++
Sbjct: 346 DVAYTALISCLCREGRASDAEKM 368


>gi|359481393|ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Vitis vinifera]
          Length = 625

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 154/337 (45%), Gaps = 8/337 (2%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           ++ +  + NV  Y+  I+ + K   L     IL  M + G+  ++VT T+L+H +S  G 
Sbjct: 251 VAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGK 310

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           ++ A+  FE +R  G + D  VY S+I     +G  K  + L D M   G+  S   Y A
Sbjct: 311 IEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGA 370

Query: 368 LLRSFAQCGDVRGAGQITNIMRIE--EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
           L+    + G +  A  + N M+ +  +  P + +   L++ Y ++G  D+A      M +
Sbjct: 371 LIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFN--TLIDGYCESGMVDEALRLQVVMEK 428

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
            G + D     S+ +   K N  D+A  LL  + + G  P   ++T L+D   +     E
Sbjct: 429 KGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVE 488

Query: 486 AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF--ERI 543
           A+++  ++ E G  P       L D Y++ G  K+A +    LE +   + PD +    +
Sbjct: 489 AKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENR--GLIPDVYTCTSL 546

Query: 544 INGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
           I+G    G +  A ++   M  +G   +     A+IS
Sbjct: 547 IHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMIS 583



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 157/352 (44%), Gaps = 12/352 (3%)

Query: 240 YFK------VAELV--LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPD 291
           YFK      VAE++  + +E    NV  Y+ LI   +    +E+A+R+ ++M E GI  D
Sbjct: 270 YFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEAD 329

Query: 292 IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVD 351
           +   T ++    ++GN+ RA   F+ +   G  P    Y ++I     AGQ +    LV+
Sbjct: 330 VYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVN 389

Query: 352 MMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAG 411
            M   GI+ +  I+  L+  + + G V  A ++  +M  +  +  + +   +     +  
Sbjct: 390 EMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLN 449

Query: 412 DPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYT 471
             D+A+     M+  G  P+     ++I  Y K+    +A  +  E+E+ G  P   TY 
Sbjct: 450 RKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYN 509

Query: 472 VLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK 531
           VL+D   +   + EA +L  ++   G  P      SL       G    AL+   F E  
Sbjct: 510 VLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKL--FDEMP 567

Query: 532 KEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
           +  + P+   +  +I+GL   G  ++A +++  M+  G    + +  +L+ S
Sbjct: 568 QRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSLVGS 619



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 86/185 (46%), Gaps = 7/185 (3%)

Query: 188 TGKCKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELV 247
           +G CKL         K+E    L +  +  + P+ + +  L+D   ++   +  K     
Sbjct: 443 SGLCKLN-------RKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFRE 495

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E+    N+  Y+ LID ++K   +++A ++  ++   G++PD+ T T L+H     G 
Sbjct: 496 MEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGK 555

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D A + F+ +   G  P+   Y +MI      G+ +    L D M  +G+   + +Y +
Sbjct: 556 VDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSS 615

Query: 368 LLRSF 372
           L+ S 
Sbjct: 616 LVGSL 620



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 108/277 (38%), Gaps = 47/277 (16%)

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           +L  +Y+       A EAFE +   GF  D                              
Sbjct: 160 LLFRVYADNKMFGEALEAFEHMEKKGFHID------------------------------ 189

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE------EFQPTLESCTLLVEAYGQA 410
             ERS  +YL  LR        RG GQ+ + +R        + + T+ S T++++   + 
Sbjct: 190 --ERSCLVYLLALR--------RG-GQVDSCLRFFRRMVNLDVEVTVYSLTIVLDGLCKR 238

Query: 411 GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATY 470
           GD +  R   D +   G K +     + I  Y K+  L     +L  +EK+G      TY
Sbjct: 239 GDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTY 298

Query: 471 TVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEA 530
           T+L+     +  I EA++L  ++ E G      +  S+     R+G  K+AL     +  
Sbjct: 299 TLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTD 358

Query: 531 KKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
           K        +  +I+G+   G ++ AQ +   M+ +G
Sbjct: 359 KGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKG 395


>gi|297741630|emb|CBI32762.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 154/337 (45%), Gaps = 8/337 (2%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           ++ +  + NV  Y+  I+ + K   L     IL  M + G+  ++VT T+L+H +S  G 
Sbjct: 255 VAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGK 314

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           ++ A+  FE +R  G + D  VY S+I     +G  K  + L D M   G+  S   Y A
Sbjct: 315 IEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGA 374

Query: 368 LLRSFAQCGDVRGAGQITNIMRIE--EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
           L+    + G +  A  + N M+ +  +  P + +   L++ Y ++G  D+A      M +
Sbjct: 375 LIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFN--TLIDGYCESGMVDEALRLQVVMEK 432

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
            G + D     S+ +   K N  D+A  LL  + + G  P   ++T L+D   +     E
Sbjct: 433 KGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVE 492

Query: 486 AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF--ERI 543
           A+++  ++ E G  P       L D Y++ G  K+A +    LE +   + PD +    +
Sbjct: 493 AKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENR--GLIPDVYTCTSL 550

Query: 544 INGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
           I+G    G +  A ++   M  +G   +     A+IS
Sbjct: 551 IHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMIS 587



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 157/352 (44%), Gaps = 12/352 (3%)

Query: 240 YFK------VAELV--LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPD 291
           YFK      VAE++  + +E    NV  Y+ LI   +    +E+A+R+ ++M E GI  D
Sbjct: 274 YFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEAD 333

Query: 292 IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVD 351
           +   T ++    ++GN+ RA   F+ +   G  P    Y ++I     AGQ +    LV+
Sbjct: 334 VYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVN 393

Query: 352 MMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAG 411
            M   GI+ +  I+  L+  + + G V  A ++  +M  +  +  + +   +     +  
Sbjct: 394 EMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLN 453

Query: 412 DPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYT 471
             D+A+     M+  G  P+     ++I  Y K+    +A  +  E+E+ G  P   TY 
Sbjct: 454 RKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYN 513

Query: 472 VLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK 531
           VL+D   +   + EA +L  ++   G  P      SL       G    AL+   F E  
Sbjct: 514 VLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKL--FDEMP 571

Query: 532 KEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
           +  + P+   +  +I+GL   G  ++A +++  M+  G    + +  +L+ S
Sbjct: 572 QRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSLVGS 623



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 86/185 (46%), Gaps = 7/185 (3%)

Query: 188 TGKCKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELV 247
           +G CKL         K+E    L +  +  + P+ + +  L+D   ++   +  K     
Sbjct: 447 SGLCKLN-------RKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFRE 499

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E+    N+  Y+ LID ++K   +++A ++  ++   G++PD+ T T L+H     G 
Sbjct: 500 MEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGK 559

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D A + F+ +   G  P+   Y +MI      G+ +    L D M  +G+   + +Y +
Sbjct: 560 VDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSS 619

Query: 368 LLRSF 372
           L+ S 
Sbjct: 620 LVGSL 624



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 108/277 (38%), Gaps = 47/277 (16%)

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           +L  +Y+       A EAFE +   GF  D                              
Sbjct: 164 LLFRVYADNKMFGEALEAFEHMEKKGFHID------------------------------ 193

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE------EFQPTLESCTLLVEAYGQA 410
             ERS  +YL  LR        RG GQ+ + +R        + + T+ S T++++   + 
Sbjct: 194 --ERSCLVYLLALR--------RG-GQVDSCLRFFRRMVNLDVEVTVYSLTIVLDGLCKR 242

Query: 411 GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATY 470
           GD +  R   D +   G K +     + I  Y K+  L     +L  +EK+G      TY
Sbjct: 243 GDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTY 302

Query: 471 TVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEA 530
           T+L+     +  I EA++L  ++ E G      +  S+     R+G  K+AL     +  
Sbjct: 303 TLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTD 362

Query: 531 KKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
           K        +  +I+G+   G ++ AQ +   M+ +G
Sbjct: 363 KGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKG 399


>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
          Length = 731

 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 141/317 (44%), Gaps = 8/317 (2%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++ E   + N+  ++ +++   K   +EDA ++  +M   G+ PD V+   LV  Y KAG
Sbjct: 250 MMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAG 309

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
               A   F  +   G  PD   + S+I     AG  +  ++LV  M   G++ +E  + 
Sbjct: 310 CSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFT 369

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           AL+  F + G +  A      M+    +P++     L+  Y   G  D+AR     M   
Sbjct: 370 ALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAK 429

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G KPD    +++I+AY K      A  L  ++ + G  P   TY+ L+  L   + +++A
Sbjct: 430 GLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDA 489

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG--PD--DFER 542
             L   + +LG  P      SL D + + G  + AL     L  K  + G  PD   +  
Sbjct: 490 HVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALS----LHDKMVKAGVLPDVVTYSV 545

Query: 543 IINGLLAGGFLQDAQRV 559
           +INGL       +AQ++
Sbjct: 546 LINGLSKSARAMEAQQL 562



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 155/370 (41%), Gaps = 50/370 (13%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+  + K  C  +A  +  +M + GI+PD+VT T L+H+  KAGNL+RA      +R
Sbjct: 298 YNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMR 357

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G Q ++  + ++I  +   G     +  V  M    I+ S   Y AL+  +   G + 
Sbjct: 358 ERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMD 417

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGD-----------------PD-------- 414
            A ++ + M  +  +P + + + ++ AY +  D                 PD        
Sbjct: 418 EARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLI 477

Query: 415 ----------QARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
                      A   F  MI+LG +PD+    S+I  + K+  ++ AL+L  ++ K G  
Sbjct: 478 RVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVL 537

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP---------------FKIQVSLC 509
           P   TY+VL++ L +     EA+QLL K+      P                 K  ++L 
Sbjct: 538 PDVVTYSVLINGLSKSARAMEAQQLLFKLYHEDPIPANTKYDALMHCCRKAELKSVLALL 597

Query: 510 DMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
             +   G+  +A +    +  +   +    +  +I+G    G +  A   H  M   GFA
Sbjct: 598 KGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQGGFA 657

Query: 570 ASERLKVALI 579
            +    ++LI
Sbjct: 658 PNSTSTISLI 667



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 137/299 (45%), Gaps = 1/299 (0%)

Query: 287 GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLG 346
           G VP ++    ++   S A +L  A+  F+S+ S G  P+   YN ++ A    G  K  
Sbjct: 151 GYVPSVLAYNAVLLALSDA-SLTSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEA 209

Query: 347 MSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA 406
           +S++  M  +G   +   Y  L+ +F + G+V GA ++  +MR    +P L +   +V  
Sbjct: 210 LSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNG 269

Query: 407 YGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG 466
             +AG  + AR  FD M+R G  PD     +++  Y K     +AL++  E+ + G  P 
Sbjct: 270 MCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPD 329

Query: 467 PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALG 526
             T+T L+  + +   +  A  L+ ++ E G         +L D + + G    AL A+ 
Sbjct: 330 VVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVR 389

Query: 527 FLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFN 585
            ++  + +     +  +ING    G + +A+ +   MEA+G          +IS+   N
Sbjct: 390 GMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKN 448



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 141/314 (44%), Gaps = 4/314 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ L+ A  +   ++ AER++  M E G+ P++VT   +V+   KAG ++ A++ F
Sbjct: 224 NVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVF 283

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + +   G  PD   YN+++  Y  AG     +S+   M   GI      + +L+    + 
Sbjct: 284 DEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKA 343

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G++  A  +   MR    Q    + T L++ + + G  D A      M +   KP   C 
Sbjct: 344 GNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCY 403

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I  Y     +D+A  LL E+E  G +P   TY+ ++    +    + A +L  ++ E
Sbjct: 404 NALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLE 463

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF--ERIINGLLAGGFL 553
            G  P      SL  +    G ++ +   + F    K  + PD+F    +I+G    G +
Sbjct: 464 KGVLPDAITYSSL--IRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNV 521

Query: 554 QDAQRVHGLMEAQG 567
           + A  +H  M   G
Sbjct: 522 ESALSLHDKMVKAG 535



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 116/259 (44%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ L+ A       ++A  IL+ M   G  P++VT   LV  + +AG +D A+   
Sbjct: 189 NVYTYNILVRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLV 248

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +R  G +P+   +NSM+     AG+ +    + D M+  G+      Y  L+  + + 
Sbjct: 249 GMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKA 308

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G    A  +   M  +   P + + T L+    +AG+ ++A +    M   G + ++   
Sbjct: 309 GCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTF 368

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I  + KK  LD AL  +  +++   +P    Y  L++    +  ++EA +LL ++  
Sbjct: 369 TALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEA 428

Query: 496 LGEAPPFKIQVSLCDMYAR 514
            G  P      ++   Y +
Sbjct: 429 KGLKPDVVTYSTIISAYCK 447



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/258 (21%), Positives = 112/258 (43%), Gaps = 15/258 (5%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           +  + +V  YS +I A+ K      A  + ++M E G++PD +T + L+ +      L  
Sbjct: 429 KGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSD 488

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A   F+++   G QPD+  Y S+I  +   G  +  +SL D M+ +G+      Y  L+ 
Sbjct: 489 AHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLIN 548

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPT---------------LESCTLLVEAYGQAGDPDQ 415
             ++      A Q+   +  E+  P                L+S   L++ +   G  ++
Sbjct: 549 GLSKSARAMEAQQLLFKLYHEDPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNE 608

Query: 416 ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
           A   +  M+      D    + +I  + +   + KAL+   ++ + GF P   +   L+ 
Sbjct: 609 ADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQGGFAPNSTSTISLIR 668

Query: 476 WLGRLQLINEAEQLLGKI 493
            L    ++ EA+Q++ ++
Sbjct: 669 GLFENGMVVEADQVIQQL 686



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 111/268 (41%), Gaps = 25/268 (9%)

Query: 220 PSRIDWINLLDRL----REQNTQLYFK-VAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           P  I + +L+  L    R  +  + FK + +L L  + F      Y+ LID H KE  +E
Sbjct: 468 PDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFT-----YTSLIDGHCKEGNVE 522

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM- 333
            A  +  KM + G++PD+VT +VL++  SK+     A++    L      P    Y+++ 
Sbjct: 523 SALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEDPIPANTKYDALM 582

Query: 334 ----------IMAYVNAGQPKLGMSLVDMMITSGIERS----EEIYLALLRSFAQCGDVR 379
                     ++A +     K  M+  D +  S ++R+      +Y  L+    + G+V 
Sbjct: 583 HCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVM 642

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A      M    F P   S   L+    + G   +A      ++      D   + ++I
Sbjct: 643 KALSFHKQMLQGGFAPNSTSTISLIRGLFENGMVVEADQVIQQLLNYCSLADAEASKALI 702

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGP 467
                +  +D  L++L  + KDG  P P
Sbjct: 703 DLNLNEGNVDAVLDVLHGMAKDGLLPSP 730


>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/347 (23%), Positives = 151/347 (43%), Gaps = 35/347 (10%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N   Y+ L+++  +   + +A  +L +M   G +PD+V+ T ++  Y   G L +  +  
Sbjct: 109 NTESYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGELQKVVQLV 168

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + ++  G +P+   Y+S+I+    +G+   G  ++  M+  G+     IY  L+  F + 
Sbjct: 169 KEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCKL 228

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G+ + A ++ + M   E  P   + + L+     +G   +A   F+ MI+ G +PD+   
Sbjct: 229 GNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTY 288

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR---------------- 479
            ++I  Y K   + KA  L  ++ + G  P   TYT L D L +                
Sbjct: 289 TALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCR 348

Query: 480 --LQL-----------------INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKK 520
             LQL                 I +A +L+ ++ E G  P      +L D Y + G   K
Sbjct: 349 KGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVK 408

Query: 521 ALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
           A + L  +  +  Q     F  ++NGL   G L+D +R+   M  +G
Sbjct: 409 ARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKG 455



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 124/261 (47%), Gaps = 2/261 (0%)

Query: 242 KVAELV--LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLV 299
           KV +LV  +  +  + N+  YS +I    K   + + E++L++M + G+ PD V  T L+
Sbjct: 163 KVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLI 222

Query: 300 HMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
             + K GN   A + F  + +    PD   ++++I     +G+      L + MI  G E
Sbjct: 223 DGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFE 282

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
             E  Y AL+  + + G+++ A  + N M      P + + T L +   ++G+ D A   
Sbjct: 283 PDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANEL 342

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
              M R G + +     +++    K   + +A+ L+ E+++ G  P   TYT L+D   +
Sbjct: 343 LHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYK 402

Query: 480 LQLINEAEQLLGKISELGEAP 500
              + +A +LL ++ + G  P
Sbjct: 403 TGEMVKARELLREMLDRGLQP 423



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 111/241 (46%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LID   K    + A ++  +M    IVPD +  + L+   S +G +  A + F  + 
Sbjct: 218 YTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMI 277

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             GF+PD+  Y ++I  Y   G+ K    L + M+  G+  +   Y AL     + G++ 
Sbjct: 278 KKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELD 337

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++ + M  +  Q  + +   +V    +AG+  QA    + M   G  PD     +++
Sbjct: 338 TANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLM 397

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            AY K   + KA  LL E+   G +P   T+ VL++ L     + + E+LL  + E G  
Sbjct: 398 DAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIM 457

Query: 500 P 500
           P
Sbjct: 458 P 458



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 101/225 (44%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           ++ F+ +   Y+ LID + K   ++ A  +  +M + G+ P++VT T L     K+G LD
Sbjct: 278 KKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELD 337

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A E    +   G Q +   YN+++     AG     + L++ M  +G+      Y  L+
Sbjct: 338 TANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLM 397

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
            ++ + G++  A ++   M     QPT+ +  +L+     +G  +       +M+  G  
Sbjct: 398 DAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIM 457

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
           P+     S++  Y  +N +  +  +   +   G  P   TY +L+
Sbjct: 458 PNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNILI 502



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/228 (20%), Positives = 104/228 (45%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +  +  Q N+  Y+ +++   K   +  A +++++M E G+ PD +T T L+  Y K G 
Sbjct: 346 MCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGE 405

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           + +A+E    +   G QP    +N ++     +G+ + G  L+  M+  GI  +   Y +
Sbjct: 406 MVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNS 465

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           +++ +    ++R + +I   M  +   P   +  +L++ + +A +  +A      M+   
Sbjct: 466 IMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKR 525

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
                    ++I  + K+  L +A  L  E+ ++G       Y + VD
Sbjct: 526 FNLTASSYNALIKGFFKRKKLLEARQLFEEMRREGLVASAEIYNLFVD 573



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 101/253 (39%), Gaps = 36/253 (14%)

Query: 210 LLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEE--------SFQTNVRDY 260
           L+ E KE  L P  I +  L+D         Y+K  E+V + E          Q  V  +
Sbjct: 377 LMEEMKEAGLHPDTITYTTLMDA--------YYKTGEMVKARELLREMLDRGLQPTVVTF 428

Query: 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320
           + L++       LED ER+LK M E GI+P+  T   ++  Y    N+  + E +  + +
Sbjct: 429 NVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCA 488

Query: 321 HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRG 380
            G  PD   YN +I  +  A   K    L   M+      +   Y AL++ F +   +  
Sbjct: 489 QGVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNALIKGFFKRKKLLE 548

Query: 381 AGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIA 440
           A Q+   MR E    + E   L V       D +    N +  + L  +  ++C      
Sbjct: 549 ARQLFEEMRREGLVASAEIYNLFV-------DMNYEEGNMETTLELCDEAIEKC------ 595

Query: 441 AYGKKNLLDKALN 453
                 LLDKA N
Sbjct: 596 ------LLDKARN 602



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 58/292 (19%), Positives = 116/292 (39%), Gaps = 9/292 (3%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTV-LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYN 331
           L +A +   K+   G+     +  + L  + SK   L    + F      G   + + YN
Sbjct: 55  LNEARKFFDKLLNYGVALSAGSCNLYLTCLSSKRDMLGMVLKVFSEFPQLGVCWNTESYN 114

Query: 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391
            ++ +    G+ +    L+  M   G       Y  ++  +   G+++   Q+   M+++
Sbjct: 115 ILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGELQKVVQLVKEMQLK 174

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
             +P L + + ++    ++G   +       M++ G  PD     ++I  + K      A
Sbjct: 175 GLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGNTQAA 234

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
             L  E+E     P    ++ L+  L     + EA++L  ++ + G  P      +L D 
Sbjct: 235 YKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDG 294

Query: 512 YARAGIEKKALQALGFLEAKKEQMG--PD--DFERIINGLLAGGFLQDAQRV 559
           Y + G  KKA     FL  +  Q+G  P+   +  + +GL   G L  A  +
Sbjct: 295 YCKLGEMKKAF----FLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANEL 342


>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic [Vitis vinifera]
 gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
          Length = 1113

 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 143/333 (42%), Gaps = 19/333 (5%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +  E  + +++ YS L+ A  K   +E    +L++M   G+ P+I T T+ + +  +AG 
Sbjct: 218 MVSEGIKPSLKTYSALMVALGKRRDIETVMGLLQEMESLGLRPNIYTFTICIRILGRAGK 277

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D A    + +   G  PD   Y  +I A  NAG+      L   M  S  +     Y+ 
Sbjct: 278 IDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYIT 337

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           LL  F+  GD+    +  + M  + + P + + T+L++A  + G  D+A    D M + G
Sbjct: 338 LLDKFSDHGDLDAIKEFWSEMEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQG 397

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P+     ++I    + N LD+AL L   +E  G E    TY + +D+ G+     +A 
Sbjct: 398 VAPNLHTYNTLICGLLRLNRLDEALELFNSMESLGLETTAYTYILFIDYYGKSGESGKAI 457

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
           +   K+   G  P     +  C+    A +   A Q  G LE  KE           NGL
Sbjct: 458 KTFEKMKTNGIVP----NIVACN----ASLYSLAEQ--GRLEEAKE---------FFNGL 498

Query: 548 LAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
              G   DA   + LM   G A      + L+S
Sbjct: 499 KKCGLAPDAITYNILMRCYGKAGRVDDAIKLLS 531



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/281 (22%), Positives = 128/281 (45%)

Query: 220 PSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERI 279
           P  + +  L+D L         K   L +   S + +   Y  L+D  +    L+  +  
Sbjct: 295 PDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAIKEF 354

Query: 280 LKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339
             +M  +G +PD+VT T+L+    K G +D A    + ++  G  P+   YN++I   + 
Sbjct: 355 WSEMEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLR 414

Query: 340 AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLES 399
             +    + L + M + G+E +   Y+  +  + + G+   A +    M+     P + +
Sbjct: 415 LNRLDEALELFNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVA 474

Query: 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELE 459
           C   + +  + G  ++A+  F+ + + G  PD      ++  YGK   +D A+ LL E+E
Sbjct: 475 CNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEME 534

Query: 460 KDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
           ++G +P       L+D L +   ++EA ++  ++ E+  AP
Sbjct: 535 ENGCDPEVVIINSLIDTLYKADRVDEAWKMFQRMKEMKLAP 575



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 138/303 (45%), Gaps = 4/303 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ LIDA      L +A+ +  KM  +   PD VT   L+  +S  G+LD  KE +
Sbjct: 296 DVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAIKEFW 355

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             + + G+ PD   +  +I A    G+       +D+M   G+  +   Y  L+    + 
Sbjct: 356 SEMEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRL 415

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
             +  A ++ N M     + T  +  L ++ YG++G+  +A   F+ M   G  P+    
Sbjct: 416 NRLDEALELFNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVAC 475

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            + + +  ++  L++A      L+K G  P   TY +L+   G+   +++A +LL ++ E
Sbjct: 476 NASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEE 535

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFL 553
            G  P   I  SL D   +A    +A +   F   K+ ++ P    +  ++ GL   G +
Sbjct: 536 NGCDPEVVIINSLIDTLYKADRVDEAWKM--FQRMKEMKLAPTVVTYNTLLAGLGKEGRV 593

Query: 554 QDA 556
           Q+A
Sbjct: 594 QEA 596



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 126/277 (45%), Gaps = 10/277 (3%)

Query: 218  LQPSRIDWINLLD-----RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC 272
            + PS   + +L+D     RL E    L++K+     + + F  N+      +DA  K   
Sbjct: 784  ITPSLEAYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNL-----FLDALGKSGK 838

Query: 273  LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
            +++   + ++M   G  P+ +T  +++    K+ +LD+A + +  L S  F P    Y  
Sbjct: 839  IKELFDLYEEMLFRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGP 898

Query: 333  MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
            +I   +  G+ +      + M+  G   +  +Y  L+  F + GDV  A ++   M  E 
Sbjct: 899  LIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEG 958

Query: 393  FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             +P L+S +++V+     G  D A   F+ +   G  PD  C   MI   G+   +++AL
Sbjct: 959  IRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEAL 1018

Query: 453  NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
            +L  E+   G  P   TY  L+  LG   ++ EA ++
Sbjct: 1019 SLFDEMRNRGITPDLYTYNALILNLGIAGMVEEAGKM 1055



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 102/241 (42%)

Query: 260  YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
            Y+ LID   K    E A  +  KM   G  PD+ T  + +    K+G +    + +E + 
Sbjct: 791  YNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEML 850

Query: 320  SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
              G +P+   +N +I   V +      + L   +++     +   Y  L+    + G + 
Sbjct: 851  FRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRLE 910

Query: 380  GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
             A Q    M      P      +L+  +G+ GD + A   F  M++ G +PD +  + M+
Sbjct: 911  EAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMV 970

Query: 440  AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
                    +D AL+   EL+  G +P    Y ++++ LGR Q + EA  L  ++   G  
Sbjct: 971  DCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMRNRGIT 1030

Query: 500  P 500
            P
Sbjct: 1031 P 1031



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 119/269 (44%), Gaps = 6/269 (2%)

Query: 245 ELVLSEESF--QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMY 302
           EL  S ES   +T    Y   ID + K      A +  +KM  NGIVP+IV     ++  
Sbjct: 423 ELFNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYSL 482

Query: 303 SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE 362
           ++ G L+ AKE F  L+  G  PD   YN ++  Y  AG+    + L+  M  +G +   
Sbjct: 483 AEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEV 542

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
            I  +L+ +  +   V  A ++   M+  +  PT+ +   L+   G+ G   +A + F  
Sbjct: 543 VIINSLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKG 602

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
           MI     P+     +++    K   +D AL +L  + +    P   TY  ++  L +   
Sbjct: 603 MIADDCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEMNCFPDVLTYNTVIYGLIKENR 662

Query: 483 INEAEQLLGKISELGEAPPFKIQVSLCDM 511
           +N A  L  ++ ++     +   V+LC +
Sbjct: 663 VNYAFWLFHQMKKV----IYPDYVTLCTL 687



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 88/176 (50%)

Query: 256  NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
            N   Y+ L++   K+  +E A  + ++M + GI PD+ + +++V      G +D A   F
Sbjct: 927  NCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYF 986

Query: 316  ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
            E L+  G  PD   YN MI     + + +  +SL D M   GI      Y AL+ +    
Sbjct: 987  EELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGIA 1046

Query: 376  GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
            G V  AG++   ++++  +P + +   L+  +  +G+PD+A + +  M+  G +P+
Sbjct: 1047 GMVEEAGKMYEELQLKGLEPNVFTYNALIRGHSMSGNPDRAYAVYKKMMVGGCRPN 1102



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 106/228 (46%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           L +A   L+KM + G V +  +   L+H+  K+G    A + +  + S G +P  K Y++
Sbjct: 173 LREAPVALEKMRKVGFVLNGYSYIGLIHLLLKSGFCREALKVYRRMVSEGIKPSLKTYSA 232

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +++A       +  M L+  M + G+  +   +   +R   + G +  A  I   M    
Sbjct: 233 LMVALGKRRDIETVMGLLQEMESLGLRPNIYTFTICIRILGRAGKIDEAYGILKRMDDAG 292

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P + + T+L++A   AG  + A+  F  M    HKPD     +++  +     LD   
Sbjct: 293 CGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAIK 352

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
               E+E DG+ P   T+T+L+D L ++  ++EA   L  + + G AP
Sbjct: 353 EFWSEMEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAP 400



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 77/343 (22%), Positives = 136/343 (39%), Gaps = 20/343 (5%)

Query: 252 SFQTNVRDYSKLIDAHAKENC------------LEDAERILKKMNENGIVPDIVTSTVLV 299
           SF  +V +  ++I  H  E C            +ED   +   M +  I   I T   + 
Sbjct: 107 SFFNSVAEMPRVI--HTTETCNYVLEMLRAHRRVEDMVVVFNLMQKQIIKRSINTYLTIF 164

Query: 300 HMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
            +    G L  A  A E +R  GF  +   Y  +I   + +G  +  + +   M++ GI+
Sbjct: 165 KVLYIRGGLREAPVALEKMRKVGFVLNGYSYIGLIHLLLKSGFCREALKVYRRMVSEGIK 224

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
            S + Y AL+ +  +  D+     +   M     +P + + T+ +   G+AG  D+A   
Sbjct: 225 PSLKTYSALMVALGKRRDIETVMGLLQEMESLGLRPNIYTFTICIRILGRAGKIDEAYGI 284

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
              M   G  PD      +I A      L+ A  L L+++    +P   TY  L+D    
Sbjct: 285 LKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSD 344

Query: 480 LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEA-KKEQMGPD 538
              ++  ++   ++   G  P       L D   + G   K  +A G L+  KK+ + P+
Sbjct: 345 HGDLDAIKEFWSEMEADGYLPDVVTFTILIDALCKVG---KVDEAFGTLDVMKKQGVAPN 401

Query: 539 --DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
              +  +I GLL    L +A  +   ME+ G   +    +  I
Sbjct: 402 LHTYNTLICGLLRLNRLDEALELFNSMESLGLETTAYTYILFI 444



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 91/219 (41%)

Query: 256  NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
            N   ++ +I    K N L+ A  +   +      P   T   L+    K G L+ AK+ F
Sbjct: 857  NTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFF 916

Query: 316  ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
            E +  +G  P+  +YN ++  +   G  +    L   M+  GI    + Y  ++      
Sbjct: 917  EEMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMV 976

Query: 376  GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
            G V  A      +++    P L    L++   G++   ++A S FD M   G  PD    
Sbjct: 977  GKVDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTY 1036

Query: 436  ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
             ++I   G   ++++A  +  EL+  G EP   TY  L+
Sbjct: 1037 NALILNLGIAGMVEEAGKMYEELQLKGLEPNVFTYNALI 1075



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 63/315 (20%), Positives = 134/315 (42%), Gaps = 5/315 (1%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           V+ ++    N+  Y+ LI    + N L++A  +   M   G+     T  + +  Y K+G
Sbjct: 392 VMKKQGVAPNLHTYNTLICGLLRLNRLDEALELFNSMESLGLETTAYTYILFIDYYGKSG 451

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
              +A + FE ++++G  P+    N+ + +    G+ +      + +   G+      Y 
Sbjct: 452 ESGKAIKTFEKMKTNGIVPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYN 511

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+R + + G V  A ++ + M      P +     L++   +A   D+A   F  M  +
Sbjct: 512 ILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDTLYKADRVDEAWKMFQRMKEM 571

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
              P      +++A  GK+  + +A  L   +  D   P   ++  L+D L +   ++ A
Sbjct: 572 KLAPTVVTYNTLLAGLGKEGRVQEATALFKGMIADDCPPNTISFNTLLDCLCKNGEVDLA 631

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERII 544
            ++L +++E+   P      ++  +Y     E +   A       K+ + PD      ++
Sbjct: 632 LKMLFRMTEMNCFPDVLTYNTV--IYGLIK-ENRVNYAFWLFHQMKKVIYPDYVTLCTLL 688

Query: 545 NGLLAGGFLQDAQRV 559
            G++  G ++DA RV
Sbjct: 689 PGVIKDGRIEDAFRV 703


>gi|410109921|gb|AFV61040.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           filifolia]
          Length = 431

 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 124/268 (46%), Gaps = 8/268 (2%)

Query: 211 LAEWKELLQPSRIDWINLLD---RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAH 267
           + +W   L+PS + +  L++   RL + +     K A L       Q +V  YS LI+  
Sbjct: 168 ITKWG--LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLA---SGVQPDVYTYSVLINGL 222

Query: 268 AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK 327
            KEN ++DA ++  +M    +VP+ VT T L+  + K G +D A E ++ + S    PD 
Sbjct: 223 CKENKMDDANKLFDEMLVKALVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDL 282

Query: 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNI 387
             YN++I      G  K    L+D M   G++  +  Y  L+    + GD+  A +    
Sbjct: 283 ITYNTLIYGLCKKGDLKQANDLIDEMSMKGLQPDKITYTTLIDGCCKEGDLDTAFEHRKR 342

Query: 388 MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447
           M  E  +    + T L+    Q G    A      M+ +G KPD R    +I  + KK  
Sbjct: 343 MIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGD 402

Query: 448 LDKALNLLLELEKDGFEPGPATYTVLVD 475
           + K   LL E+++DG  P   TY VL++
Sbjct: 403 VWKGSKLLKEMQRDGHVPSVVTYNVLMN 430



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 63/313 (20%), Positives = 145/313 (46%), Gaps = 5/313 (1%)

Query: 191 CKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELV--- 247
           C+ + + ++ L+  +       E  E   P+ + + N+L     ++  +  +VA+ V   
Sbjct: 110 CRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDI--RVAQSVFDA 167

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +++   + +V  Y+ L++ + +   L++  R+   M  +G+ PD+ T +VL++   K   
Sbjct: 168 ITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKENK 227

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D A + F+ +      P+   + ++I  +   G+  L M +   M++  +      Y  
Sbjct: 228 MDDANKLFDEMLVKALVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNT 287

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    + GD++ A  + + M ++  QP   + T L++   + GD D A  +   MI+  
Sbjct: 288 LIYGLCKKGDLKQANDLIDEMSMKGLQPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQEN 347

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            + DD    ++I+   ++     A  +L E+   G +P   TYT++++   +   + +  
Sbjct: 348 IRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGS 407

Query: 488 QLLGKISELGEAP 500
           +LL ++   G  P
Sbjct: 408 KLLKEMQRDGHVP 420



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/267 (20%), Positives = 110/267 (41%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E  +  ++  ++ L+    K+  +  A+ +   + + G+ P +V+   L++ Y + G+LD
Sbjct: 135 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 194

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
                  ++ + G QPD   Y+ +I       +      L D M+   +  +   +  L+
Sbjct: 195 EGFRLKSAMLASGVQPDVYTYSVLINGLCKENKMDDANKLFDEMLVKALVPNGVTFTTLI 254

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               + G V  A +I   M  +   P L +   L+    + GD  QA    D M   G +
Sbjct: 255 DGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMSMKGLQ 314

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     ++I    K+  LD A      + ++        YT L+  L +     +AE++
Sbjct: 315 PDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKM 374

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAG 516
           L ++  +G  P  +    + + + + G
Sbjct: 375 LREMLSVGLKPDARTYTMIINEFCKKG 401


>gi|255570715|ref|XP_002526312.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534393|gb|EEF36101.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 729

 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 129/284 (45%), Gaps = 10/284 (3%)

Query: 227 NLLDRLREQNTQLY-------FKVAELVLSEESFQT---NVRDYSKLIDAHAKENCLEDA 276
           NL+  +   NT +Y          A ++L E  F+    N+  Y+ LID   +   LE A
Sbjct: 372 NLMPDIISYNTLIYGFCRLGNIGEAFILLDELRFRNLSFNIVTYNTLIDGLCRLGDLETA 431

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
            ++ + M   GI PD+VT TVLV+   K GN+  AKE F+ +   G  PD+  Y + I+ 
Sbjct: 432 LKLKEDMINRGIHPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARIVG 491

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
            +  G       L + M+T G       Y   +    + G++  AG++   M  +   P 
Sbjct: 492 ELKLGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGHVPD 551

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
             + T  + A+ + G   + R  F  M+  G  P       +I A+     LD A+   L
Sbjct: 552 HVTYTSFMHAHMENGHLREGREIFYDMLSRGQTPTVVTYTVLIHAHALNGRLDWAMAYFL 611

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
           E+++ G  P   TY VL++   +++ +++A +   ++ E G  P
Sbjct: 612 EMQEKGVVPNVITYNVLINGFCKVRKMDQACKFFIEMQEKGIFP 655



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 105/241 (43%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI  + K+  L +A  + ++M   G+ P + +   +++ + K G +  A++    + 
Sbjct: 310 YNPLICGYCKKGLLVEALALWEEMVTRGVSPTVASHNTIMYGFCKEGKMSDARQQLSDML 369

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
                PD   YN++I  +   G       L+D +    +  +   Y  L+    + GD+ 
Sbjct: 370 KKNLMPDIISYNTLIYGFCRLGNIGEAFILLDELRFRNLSFNIVTYNTLIDGLCRLGDLE 429

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++   M      P + + T+LV    + G+   A+  FD M+ +G  PD     + I
Sbjct: 430 TALKLKEDMINRGIHPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARI 489

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
               K     KA  L  E+   GF P   TY V V+ L +L  + EA +LL K+   G  
Sbjct: 490 VGELKLGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGHV 549

Query: 500 P 500
           P
Sbjct: 550 P 550



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 123/275 (44%), Gaps = 4/275 (1%)

Query: 228 LLDRLREQNTQLYFKVAEL--VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNE 285
           +L  LR++N  L  K  E+  ++ E   +  V  Y+ ++ +  K   ++ A  ++ KM E
Sbjct: 208 ILKILRDKN--LLVKALEVYRMMGEYGIRPTVTTYNTMLHSFCKGGEVQRALDLVPKMQE 265

Query: 286 NGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKL 345
            G  P  VT  VL++  SK G L +AK   + +   G +     YN +I  Y   G    
Sbjct: 266 RGCYPSEVTFNVLINGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVE 325

Query: 346 GMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVE 405
            ++L + M+T G+  +   +  ++  F + G +  A Q  + M  +   P + S   L+ 
Sbjct: 326 ALALWEEMVTRGVSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIY 385

Query: 406 AYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
            + + G+  +A    D +       +     ++I    +   L+ AL L  ++   G  P
Sbjct: 386 GFCRLGNIGEAFILLDELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRGIHP 445

Query: 466 GPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
              TYTVLV+   +L  +  A++   ++  +G AP
Sbjct: 446 DVVTYTVLVNGACKLGNMLMAKEFFDEMLHVGLAP 480



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 121/302 (40%), Gaps = 7/302 (2%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F  +V++ ++++     +N L  A  + + M E GI P + T   ++H + K G + RA 
Sbjct: 198 FLPDVKNCNRILKILRDKNLLVKALEVYRMMGEYGIRPTVTTYNTMLHSFCKGGEVQRAL 257

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           +    ++  G  P +  +N +I      G+ +    L+  M  +G+  S   Y  L+  +
Sbjct: 258 DLVPKMQERGCYPSEVTFNVLINGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLICGY 317

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + G +  A  +   M      PT+ S   ++  + + G    AR     M++    PD 
Sbjct: 318 CKKGLLVEALALWEEMVTRGVSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDI 377

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               ++I  + +   + +A  LL EL          TY  L+D L RL  +  A +L   
Sbjct: 378 ISYNTLIYGFCRLGNIGEAFILLDELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKED 437

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFL-EAKKEQMGPDDF---ERIINGLL 548
           +   G  P       L +   + G     L A  F  E     + PD F    RI+  L 
Sbjct: 438 MINRGIHPDVVTYTVLVNGACKLG---NMLMAKEFFDEMLHVGLAPDQFAYTARIVGELK 494

Query: 549 AG 550
            G
Sbjct: 495 LG 496



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 93/224 (41%), Gaps = 45/224 (20%)

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A ++ ++M   G  PD++T  V V+   K GNL+ A E  + +   G  PD   Y S + 
Sbjct: 501 AFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGHVPDHVTYTSFMH 560

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
           A++  G  + G                EI+           D+   GQ           P
Sbjct: 561 AHMENGHLREG---------------REIFY----------DMLSRGQ----------TP 585

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
           T+ + T+L+ A+   G  D A + F  M   G  P+      +I  + K   +D+A    
Sbjct: 586 TVVTYTVLIHAHALNGRLDWAMAYFLEMQEKGVVPNVITYNVLINGFCKVRKMDQACKFF 645

Query: 456 LELEKDGFEPGPATYTVLVD-------WLGRLQLINEAEQLLGK 492
           +E+++ G  P   TYT+L++       W   L+L     Q+LGK
Sbjct: 646 IEMQEKGIFPNKYTYTILINENCNMGKWQEALRL---YAQMLGK 686



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 104/235 (44%), Gaps = 2/235 (0%)

Query: 228 LLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENG 287
           ++  L+  +T   FK+ E +L++  F  +V  Y+  ++   K   LE+A  +L+KM  +G
Sbjct: 489 IVGELKLGDTAKAFKLQEEMLTK-GFPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDG 547

Query: 288 IVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGM 347
            VPD VT T  +H + + G+L   +E F  + S G  P    Y  +I A+   G+    M
Sbjct: 548 HVPDHVTYTSFMHAHMENGHLREGREIFYDMLSRGQTPTVVTYTVLIHAHALNGRLDWAM 607

Query: 348 SLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAY 407
           +    M   G+  +   Y  L+  F +   +  A +    M+ +   P   + T+L+   
Sbjct: 608 AYFLEMQEKGVVPNVITYNVLINGFCKVRKMDQACKFFIEMQEKGIFPNKYTYTILINEN 667

Query: 408 GQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
              G   +A   +  M+    +PD  CT   +     K+   +A+  +  L  DG
Sbjct: 668 CNMGKWQEALRLYAQMLGKRIRPDS-CTHGALLKKLDKDYKVQAVQFIESLILDG 721



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 75/339 (22%), Positives = 141/339 (41%), Gaps = 18/339 (5%)

Query: 226 INLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA-----ERIL 280
           I +L  +RE+ T +  +  + VL++  F+T+   +  ++     +NCL  +     ERI+
Sbjct: 109 IRVLYSIREKPT-IALRFFKCVLTQPGFKTSEYAFCAILQILV-DNCLMKSAYWVMERII 166

Query: 281 KKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNA 340
                 GIV D++    L +         +    FE +  + F PD K  N ++    + 
Sbjct: 167 S-FEMYGIV-DVLIGGYLNY---------QCLLVFEKMMRNRFLPDVKNCNRILKILRDK 215

Query: 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
                 + +  MM   GI  +   Y  +L SF + G+V+ A  +   M+     P+  + 
Sbjct: 216 NLLVKALEVYRMMGEYGIRPTVTTYNTMLHSFCKGGEVQRALDLVPKMQERGCYPSEVTF 275

Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
            +L+    + G+  QA+     M + G +        +I  Y KK LL +AL L  E+  
Sbjct: 276 NVLINGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVEALALWEEMVT 335

Query: 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKK 520
            G  P  A++  ++    +   +++A Q L  + +    P      +L   + R G   +
Sbjct: 336 RGVSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYGFCRLGNIGE 395

Query: 521 ALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           A   L  L  +        +  +I+GL   G L+ A ++
Sbjct: 396 AFILLDELRFRNLSFNIVTYNTLIDGLCRLGDLETALKL 434


>gi|297734265|emb|CBI15512.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 120/273 (43%), Gaps = 6/273 (2%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F   V   + L++   K N  +    + ++M   GI P++ T  +L H+  K G+  +  
Sbjct: 219 FVPTVITSNYLLNGLLKLNYTDRCWEVYEEMERFGIAPNLYTFNILTHVLCKDGDTGKVN 278

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           +  E +   GF PD   YN++I +Y   G+      L  +M   G+      Y AL+   
Sbjct: 279 KFLEKMEEEGFDPDIVTYNTLINSYCRKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNGL 338

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + G VR A Q+ + M      P + +   L+  Y + G   ++RS    MI  G  PD 
Sbjct: 339 CKEGRVREAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPDS 398

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
                ++  YGK+     ALNL++EL++ G       Y+ L+  L R      A+ LL +
Sbjct: 399 FTCWVLVEGYGKEGKFLSALNLVVELQRFGVSISQDIYSYLIVALCRENRPFAAKNLLER 458

Query: 493 ISELGEAPPFKIQVSL------CDMYARAGIEK 519
           +S+ G  P  +I   L      CD  A A + K
Sbjct: 459 MSKDGHKPELEIYNELIKSFCQCDCIAEALLLK 491



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 69/309 (22%), Positives = 126/309 (40%), Gaps = 35/309 (11%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L++   KE  + +A ++  +M   G+ PDIVT   L+H Y K G +  ++     + 
Sbjct: 331 YTALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMI 390

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
            +G  PD      ++  Y   G+    ++LV  +   G+  S++IY              
Sbjct: 391 WNGISPDSFTCWVLVEGYGKEGKFLSALNLVVELQRFGVSISQDIY-------------- 436

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
                                + L+ A  +   P  A++  + M + GHKP+      +I
Sbjct: 437 ---------------------SYLIVALCRENRPFAAKNLLERMSKDGHKPELEIYNELI 475

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            ++ + + + +AL L +E+     +P  ATY  ++  L RL    E E L+G++   G  
Sbjct: 476 KSFCQCDCIAEALLLKMEMVDKEIKPNLATYRAVIGCLSRLSRSMEGESLVGEMVASGML 535

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P  +I  +L   Y R     KA   L F   + +    + F  +I    A G +  +  +
Sbjct: 536 PDLEICRALFYGYCRENDIDKAESLLSFFAKEFQIHDTESFNALIRITSAKGDIARSLEI 595

Query: 560 HGLMEAQGF 568
             +M   G 
Sbjct: 596 QDMMLKMGL 604



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 104/225 (46%), Gaps = 6/225 (2%)

Query: 231 RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVP 290
           R+RE + QL+ ++    LS +     +  Y+ LI  + KE  ++++  +L  M  NGI P
Sbjct: 343 RVREAH-QLFHRMVHRGLSPD-----IVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISP 396

Query: 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV 350
           D  T  VLV  Y K G    A      L+  G    + +Y+ +I+A     +P    +L+
Sbjct: 397 DSFTCWVLVEGYGKEGKFLSALNLVVELQRFGVSISQDIYSYLIVALCRENRPFAAKNLL 456

Query: 351 DMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410
           + M   G +   EIY  L++SF QC  +  A  +   M  +E +P L +   ++    + 
Sbjct: 457 ERMSKDGHKPELEIYNELIKSFCQCDCIAEALLLKMEMVDKEIKPNLATYRAVIGCLSRL 516

Query: 411 GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
               +  S    M+  G  PD     ++   Y ++N +DKA +LL
Sbjct: 517 SRSMEGESLVGEMVASGMLPDLEICRALFYGYCRENDIDKAESLL 561



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 61/303 (20%), Positives = 109/303 (35%), Gaps = 35/303 (11%)

Query: 245 ELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK 304
            L+L  E    +   +  L+ A+ +   + +  R  ++M   G VP ++TS  L++   K
Sbjct: 176 NLILCTEDCNWDPVVFDMLVKAYLRMGRVREGLRSFRRMLRVGFVPTVITSNYLLNGLLK 235

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
               DR  E +E +   G  P+   +N  I+ +V                          
Sbjct: 236 LNYTDRCWEVYEEMERFGIAPNLYTFN--ILTHV-------------------------- 267

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
                    + GD     +    M  E F P + +   L+ +Y + G  D A   +  M 
Sbjct: 268 -------LCKDGDTGKVNKFLEKMEEEGFDPDIVTYNTLINSYCRKGRLDDAFYLYKIMY 320

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
           R G  PD     +++    K+  + +A  L   +   G  P   TY  L+    +   + 
Sbjct: 321 RRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQ 380

Query: 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERII 544
           E+  LL  +   G +P       L + Y + G    AL  +  L+     +  D +  +I
Sbjct: 381 ESRSLLHDMIWNGISPDSFTCWVLVEGYGKEGKFLSALNLVVELQRFGVSISQDIYSYLI 440

Query: 545 NGL 547
             L
Sbjct: 441 VAL 443


>gi|297727717|ref|NP_001176222.1| Os10g0495400 [Oryza sativa Japonica Group]
 gi|255679525|dbj|BAH94950.1| Os10g0495400, partial [Oryza sativa Japonica Group]
          Length = 438

 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 113/231 (48%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ +I+   KE   + A     +M +  I P++VT + ++    KA  +D+A E  
Sbjct: 203 DVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPNVVTYSSIIAALCKAQAMDKAMEVL 262

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
            ++  +G  PD   YNS++  Y ++GQPK  +  +  M + G+E +   Y +L+    + 
Sbjct: 263 NTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYRSLMNYLCKN 322

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G    A +I + M     +P + +   L++ Y   G   +  +  D M+R G +PD    
Sbjct: 323 GRCTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVF 382

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
             +I AY K+  +D+A+ +  ++ + G  P    Y  ++D L +   +++A
Sbjct: 383 NILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDA 433



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 50/233 (21%), Positives = 106/233 (45%), Gaps = 8/233 (3%)

Query: 195 TDKILSLEKEEDPSPLLAEWKELL----QPSRIDWINLLDRLREQNTQLYFKVAELV--L 248
           T  I    KE D     + + E+L     P+ + + +++  L +   Q   K  E++  +
Sbjct: 208 TTVINGFFKEGDSDKAYSTYHEMLDRRISPNVVTYSSIIAALCK--AQAMDKAMEVLNTM 265

Query: 249 SEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNL 308
            +     +   Y+ ++  +      ++A   LKKM  +G+ P++VT   L++   K G  
Sbjct: 266 VKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYRSLMNYLCKNGRC 325

Query: 309 DRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLAL 368
             A++ F+S+   G +PD   Y +++  Y   G      +L+D+M+ +GI+    ++  L
Sbjct: 326 TEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNIL 385

Query: 369 LRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421
           + ++A+   V  A  + + MR     P +     +++   ++G  D A   F+
Sbjct: 386 ICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFE 438



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/312 (18%), Positives = 126/312 (40%), Gaps = 39/312 (12%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDA-ERILKKMNENGIVPDIVTSTV----------- 297
           ++ F+     ++ L+     +    DA + +L++M E   +PD+ + T+           
Sbjct: 123 KKGFRVEAITFAPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRS 182

Query: 298 -----LVHM----------------------YSKAGNLDRAKEAFESLRSHGFQPDKKVY 330
                L+HM                      + K G+ D+A   +  +      P+   Y
Sbjct: 183 QEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPNVVTY 242

Query: 331 NSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRI 390
           +S+I A   A      M +++ M+ +G+      Y ++L  +   G  + A      MR 
Sbjct: 243 SSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRS 302

Query: 391 EEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDK 450
           +  +P + +   L+    + G   +AR  FD M + G +PD     +++  Y  K  L +
Sbjct: 303 DGVEPNVVTYRSLMNYLCKNGRCTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVE 362

Query: 451 ALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCD 510
              LL  + ++G +P    + +L+    + + +++A  +  K+ + G  P      ++ D
Sbjct: 363 MHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVID 422

Query: 511 MYARAGIEKKAL 522
           +  ++G    A+
Sbjct: 423 VLCKSGSVDDAM 434



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 74/329 (22%), Positives = 126/329 (38%), Gaps = 39/329 (11%)

Query: 276 AERILKKMNENG---IVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           A  +  +M   G   + PD+ T ++L+    +AG LD    A  ++   GF+ +   +  
Sbjct: 76  AVSLFNRMARAGADEVTPDLCTYSILIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFAP 135

Query: 333 MIMAYVNAGQPKLGMSLV---------------DMMITSGI---ERSEEIYLALLRSFAQ 374
           ++       +    M +V                 ++  G+    RS+E  L LL   A 
Sbjct: 136 LLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEA-LELLHMMA- 193

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
             D RG G            P + S T ++  + + GD D+A S +  M+     P+   
Sbjct: 194 --DDRGGGS----------PPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPNVVT 241

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
            +S+IAA  K   +DKA+ +L  + K+G  P   TY  ++          EA   L K+ 
Sbjct: 242 YSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMR 301

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGF 552
             G  P      SL +   + G   +A +   F    K  + PD   +  ++ G    G 
Sbjct: 302 SDGVEPNVVTYRSLMNYLCKNGRCTEARKI--FDSMTKRGLEPDIATYRTLLQGYATKGA 359

Query: 553 LQDAQRVHGLMEAQGFAASERLKVALISS 581
           L +   +  LM   G      +   LI +
Sbjct: 360 LVEMHALLDLMVRNGIQPDHHVFNILICA 388


>gi|22128589|gb|AAM52340.1| fertility restorer-like protein [Petunia x hybrida]
          Length = 591

 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/365 (23%), Positives = 158/365 (43%), Gaps = 36/365 (9%)

Query: 185 KPITGKCKLITDKILSLEKEEDPSPLLAEWKE-LLQPSRIDWINLLDRLREQNTQLYFKV 243
           KP T    ++ D        +  + LL E K+  + P    +  L+D L + +     + 
Sbjct: 210 KPNTRTYTIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRT 269

Query: 244 AELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS 303
             L +   +   NV  ++ +ID   KE  +EDAE I++ M E G+ PD++T  +++  Y 
Sbjct: 270 LFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYG 329

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363
             G +DRA+E F+S+ +   +PD   YN +I  Y  A Q K+  +               
Sbjct: 330 LRGQVDRAREIFDSMINKSIEPDIISYNILINGY--ARQKKIDEA--------------- 372

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
             + + R  +Q G                 +P++ +C +L+    + G    A++ FD M
Sbjct: 373 --MQVCREISQKG----------------LKPSIVTCNVLLHGLFELGRTKSAQNFFDEM 414

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483
           +  GH PD     +++  Y K  L+++A++   +LE+   +     YT ++D L +   +
Sbjct: 415 LSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKL 474

Query: 484 NEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERI 543
           ++A     K+  +G  P      ++   Y + G+  +A   L  +E          +  I
Sbjct: 475 DKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVI 534

Query: 544 INGLL 548
           + G L
Sbjct: 535 VRGFL 539



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/343 (21%), Positives = 144/343 (41%), Gaps = 37/343 (10%)

Query: 216 ELLQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
            + +P+ + +  +++ L ++ +TQ  F +  L + + S + N R Y+ +IDA  K+  L+
Sbjct: 172 NICEPNEVMYGTVMNGLCKKGHTQKAFDLLRL-MEQGSTKPNTRTYTIVIDAFCKDGMLD 230

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
            A  +L +M +  I PDI T + L+    K    +  +  F  +      P+   +NS+I
Sbjct: 231 GATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVI 290

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
                 G+ +    ++  MI  G++                                   
Sbjct: 291 DGLCKEGKVEDAEEIMRYMIEKGVD----------------------------------- 315

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P + +  ++++ YG  G  D+AR  FD MI    +PD      +I  Y ++  +D+A+ +
Sbjct: 316 PDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPDIISYNILINGYARQKKIDEAMQV 375

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
             E+ + G +P   T  VL+  L  L     A+    ++   G  P      +L   Y +
Sbjct: 376 CREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFK 435

Query: 515 AGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQ 557
            G+ ++A+     LE ++E      +  +I+GL   G L  A 
Sbjct: 436 NGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAH 478



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 112/245 (45%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E+    +V  Y+ +ID +     ++ A  I   M    I PDI++  +L++ Y++   +D
Sbjct: 311 EKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPDIISYNILINGYARQKKID 370

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A +    +   G +P     N ++      G+ K   +  D M+++G       +  LL
Sbjct: 371 EAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLL 430

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
             + + G V  A    + +        ++  T +++   + G  D+A + F+ +  +G  
Sbjct: 431 GGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLH 490

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     +MI+ Y ++ LLD+A ++L ++E +G      TY V+V    R   ++E +  
Sbjct: 491 PDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVIVRGFLRSNKVSEMKAF 550

Query: 490 LGKIS 494
           L +I+
Sbjct: 551 LEEIA 555



 Score = 47.0 bits (110), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 53/263 (20%), Positives = 106/263 (40%), Gaps = 13/263 (4%)

Query: 288 IVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSH---GFQPDKKVYNSMIMAYVNAGQPK 344
           I+  +V S  L+H         R    F  L  H   G   ++  + ++I       + K
Sbjct: 109 ILSIVVNSCCLMH---------RTDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVK 159

Query: 345 LGMSLVDMMITSGI-ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403
             + L   ++   I E +E +Y  ++    + G  + A  +  +M     +P   + T++
Sbjct: 160 DAVHLFKKLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTRTYTIV 219

Query: 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGF 463
           ++A+ + G  D A S  + M +    PD    +++I A  K +  +    L LE+     
Sbjct: 220 IDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNI 279

Query: 464 EPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
            P   T+  ++D L +   + +AE+++  + E G  P       + D Y   G   +A +
Sbjct: 280 YPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRARE 339

Query: 524 ALGFLEAKKEQMGPDDFERIING 546
               +  K  +     +  +ING
Sbjct: 340 IFDSMINKSIEPDIISYNILING 362


>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 132/303 (43%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           Q NV  YS +ID   K+  + DA  +  +M   GI P++VT + L+  +   G L  A +
Sbjct: 194 QPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAID 253

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            F  +     +PD   +N ++  +   G+ K G ++  MM+  GI+ +   Y +L+  + 
Sbjct: 254 LFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYC 313

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
              +V  A  I   M      P ++S  +L++ + +    D+A + F  M      PD  
Sbjct: 314 LVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVV 373

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
              S+I    K   +  AL L+ E+   G  P   TY+ ++D L +   +++A  LL K+
Sbjct: 374 TYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKL 433

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFL 553
            + G  P       L D   + G  + A      L  K   +  + +  +I+G    G  
Sbjct: 434 KDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLF 493

Query: 554 QDA 556
            +A
Sbjct: 494 DEA 496



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 107/233 (45%)

Query: 242 KVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM 301
           K    ++ ++  + NV  Y  L+D +     +  A+ IL  M++ G+ PDI +  +L+  
Sbjct: 287 KTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDG 346

Query: 302 YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS 361
           + K   +D A   F+ +      PD   YNS+I      G+    + LVD M   G+   
Sbjct: 347 FCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPD 406

Query: 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421
              Y ++L +  +   V  A  +   ++ +  +P + + T+L++   + G  + A + F+
Sbjct: 407 IITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFE 466

Query: 422 YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
            ++  G+         MI  +  K L D+AL LL +++ +   P   TY +++
Sbjct: 467 DLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCIPDAVTYEIII 519



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 74/362 (20%), Positives = 143/362 (39%), Gaps = 35/362 (9%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           +  N   ++ LI     +  +  A      +   G   D V    L+H   K G    A 
Sbjct: 123 YHPNTITFTTLIKGLCLKGQIHQALLFHDNVVAMGFQLDQVGYGTLIHGLCKVGETRAAL 182

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           +    +  +  QP+  +Y+++I              L   M++ GI  +   Y AL+  F
Sbjct: 183 DLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGF 242

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
              G ++ A  + N M +E  +P + +  +LV+ + + G   + ++ F  M++ G KP+ 
Sbjct: 243 FTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNV 302

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL--- 489
               S++  Y     ++KA ++L  + + G  P   +Y +L+D   +++ ++EA  L   
Sbjct: 303 VTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKE 362

Query: 490 ----------------------LGKIS----------ELGEAPPFKIQVSLCDMYARAGI 517
                                 LGKIS          + G  P      S+ D   +   
Sbjct: 363 MHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQ 422

Query: 518 EKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVA 577
             KA+  L  L+ +  +     +  +I+GL  GG L+DA  +   +  +G+  +      
Sbjct: 423 VDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTV 482

Query: 578 LI 579
           +I
Sbjct: 483 MI 484



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 59/284 (20%), Positives = 124/284 (43%), Gaps = 6/284 (2%)

Query: 287 GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLG 346
           G  P+ +T T L+      G + +A    +++ + GFQ D+  Y ++I      G+ +  
Sbjct: 122 GYHPNTITFTTLIKGLCLKGQIHQALLFHDNVVAMGFQLDQVGYGTLIHGLCKVGETRAA 181

Query: 347 MSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA 406
           + L+  +  + ++ +  +Y  ++    +   V  A  + + M  +   P + + + L+  
Sbjct: 182 LDLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISG 241

Query: 407 YGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG 466
           +   G    A   F+ MI    KPD      ++  + K   + +   +   + K G +P 
Sbjct: 242 FFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPN 301

Query: 467 PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALG 526
             TY  L+D    ++ +N+A+ +L  +S+ G  P  +    L D + +    KK  +A+ 
Sbjct: 302 VVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKI---KKVDEAMN 358

Query: 527 -FLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQG 567
            F E   + + PD   +  +I+GL   G +  A ++   M  +G
Sbjct: 359 LFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRG 402



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 2/116 (1%)

Query: 220 PSRIDWINLLDRLREQNTQLYFKVAELV-LSEESFQTNVRDYSKLIDAHAKENCLEDAER 278
           P  I + ++LD L  +N Q+   +A L  L ++  + N+  Y+ LID   K   LEDA  
Sbjct: 405 PDIITYSSILDALC-KNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHN 463

Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           I + +   G    + T TV++H +   G  D A      ++ +   PD   Y  +I
Sbjct: 464 IFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCIPDAVTYEIII 519


>gi|255569207|ref|XP_002525572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223535151|gb|EEF36831.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 687

 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 107/215 (49%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ LI+A  K   +  AE +L++M   G++PD+VT   L+  + K G L +A E  
Sbjct: 425 SVTTYTLLINACCKSGDMAMAEYLLQRMMLEGLIPDVVTFNCLIDGFGKKGYLQKAFELL 484

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + +RS G  PD   YN++I + +  G P     ++  +I  G+      +  ++  F++ 
Sbjct: 485 DIMRSAGMSPDTVTYNALIHSLIARGYPNEAKDILHELIRRGLSPDVMTFTDVIDGFSKK 544

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G+   A  + + M     +P + +C+ L+  Y +A   D+A + F  M+  G KPD    
Sbjct: 545 GNFEEAFLVWSYMSERHVKPDVVTCSALLNGYCRARRMDEANALFLKMLDAGLKPDLVLY 604

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATY 470
            ++I  +     ++ A NL+  +  DGF P   T+
Sbjct: 605 NNLIHGFCSAGNMNAACNLVAMMIDDGFLPNITTH 639



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/261 (22%), Positives = 117/261 (44%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  YS  +    K+  + +A +  ++M+E G+ PD    T+++  Y K G++++A +  
Sbjct: 355 NIFVYSSFMTKLCKDGNMLEASKTFQEMSEFGLYPDCFCYTIIIGGYCKVGDINKAFQYL 414

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G  P    Y  +I A   +G   +   L+  M+  G+      +  L+  F + 
Sbjct: 415 GEMLKFGITPSVTTYTLLINACCKSGDMAMAEYLLQRMMLEGLIPDVVTFNCLIDGFGKK 474

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G ++ A ++ +IMR     P   +   L+ +    G P++A+     +IR G  PD    
Sbjct: 475 GYLQKAFELLDIMRSAGMSPDTVTYNALIHSLIARGYPNEAKDILHELIRRGLSPDVMTF 534

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +I  + KK   ++A  +   + +   +P   T + L++   R + ++EA  L  K+ +
Sbjct: 535 TDVIDGFSKKGNFEEAFLVWSYMSERHVKPDVVTCSALLNGYCRARRMDEANALFLKMLD 594

Query: 496 LGEAPPFKIQVSLCDMYARAG 516
            G  P   +  +L   +  AG
Sbjct: 595 AGLKPDLVLYNNLIHGFCSAG 615



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/349 (22%), Positives = 139/349 (39%), Gaps = 36/349 (10%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENG-------------------------- 287
           + +V  Y+ +IDA  K +C++ A  +L KM   G                          
Sbjct: 286 KADVIAYTIVIDALCKISCVKVATSLLFKMIHCGISVDSVSVSSVIDGYCKKGRSDKAIN 345

Query: 288 ------IVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAG 341
                 + P+I   +  +    K GN+  A + F+ +   G  PD   Y  +I  Y   G
Sbjct: 346 LLNFFNVRPNIFVYSSFMTKLCKDGNMLEASKTFQEMSEFGLYPDCFCYTIIIGGYCKVG 405

Query: 342 QPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCT 401
                   +  M+  GI  S   Y  L+ +  + GD+  A  +   M +E   P + +  
Sbjct: 406 DINKAFQYLGEMLKFGITPSVTTYTLLINACCKSGDMAMAEYLLQRMMLEGLIPDVVTFN 465

Query: 402 LLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD 461
            L++ +G+ G   +A    D M   G  PD     ++I +   +   ++A ++L EL + 
Sbjct: 466 CLIDGFGKKGYLQKAFELLDIMRSAGMSPDTVTYNALIHSLIARGYPNEAKDILHELIRR 525

Query: 462 GFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKA 521
           G  P   T+T ++D   +     EA  +   +SE    P      +L + Y RA    +A
Sbjct: 526 GLSPDVMTFTDVIDGFSKKGNFEEAFLVWSYMSERHVKPDVVTCSALLNGYCRARRMDEA 585

Query: 522 LQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
             AL FL+     + PD   +  +I+G  + G +  A  +  +M   GF
Sbjct: 586 -NAL-FLKMLDAGLKPDLVLYNNLIHGFCSAGNMNAACNLVAMMIDDGF 632



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/253 (22%), Positives = 114/253 (45%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +SE     +   Y+ +I  + K   +  A + L +M + GI P + T T+L++   K+G+
Sbjct: 382 MSEFGLYPDCFCYTIIIGGYCKVGDINKAFQYLGEMLKFGITPSVTTYTLLINACCKSGD 441

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A+   + +   G  PD   +N +I  +   G  +    L+D+M ++G+      Y A
Sbjct: 442 MAMAEYLLQRMMLEGLIPDVVTFNCLIDGFGKKGYLQKAFELLDIMRSAGMSPDTVTYNA 501

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+ S    G    A  I + +      P + + T +++ + + G+ ++A   + YM    
Sbjct: 502 LIHSLIARGYPNEAKDILHELIRRGLSPDVMTFTDVIDGFSKKGNFEEAFLVWSYMSERH 561

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            KPD    ++++  Y +   +D+A  L L++   G +P    Y  L+        +N A 
Sbjct: 562 VKPDVVTCSALLNGYCRARRMDEANALFLKMLDAGLKPDLVLYNNLIHGFCSAGNMNAAC 621

Query: 488 QLLGKISELGEAP 500
            L+  + + G  P
Sbjct: 622 NLVAMMIDDGFLP 634



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/324 (20%), Positives = 134/324 (41%), Gaps = 7/324 (2%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS L+D +  E+ +  A  ++ ++    I P +     L+    ++  LD A +  E ++
Sbjct: 187 YSMLVDCYVTESKVSLALNLIHEIKLLNIFPSMGVCNSLLKALLRSHQLDLAWDILEGMQ 246

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           S G   +  + +  I +Y   G  + G  ++  M   GI+     Y  ++ +  +   V+
Sbjct: 247 SFGMHLNASILSLFIESYCAEGNIQSGWKILMEMKNYGIKADVIAYTIVIDALCKISCVK 306

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  +   M          S + +++ Y + G  D+A +  ++      +P+    +S +
Sbjct: 307 VATSLLFKMIHCGISVDSVSVSSVIDGYCKKGRSDKAINLLNF---FNVRPNIFVYSSFM 363

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
               K   + +A     E+ + G  P    YT+++    ++  IN+A Q LG++ + G  
Sbjct: 364 TKLCKDGNMLEASKTFQEMSEFGLYPDCFCYTIIIGGYCKVGDINKAFQYLGEMLKFGIT 423

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQ 557
           P       L +   ++G    A+          E + PD   F  +I+G    G+LQ A 
Sbjct: 424 PSVTTYTLLINACCKSG--DMAMAEYLLQRMMLEGLIPDVVTFNCLIDGFGKKGYLQKAF 481

Query: 558 RVHGLMEAQGFAASERLKVALISS 581
            +  +M + G +       ALI S
Sbjct: 482 ELLDIMRSAGMSPDTVTYNALIHS 505



 Score = 47.0 bits (110), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 28/123 (22%), Positives = 60/123 (48%), Gaps = 6/123 (4%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELV---LSEESFQTNVRDYSKLIDAHAKENCLE 274
           L P  + + +++D   ++     F+ A LV   +SE   + +V   S L++ + +   ++
Sbjct: 527 LSPDVMTFTDVIDGFSKKGN---FEEAFLVWSYMSERHVKPDVVTCSALLNGYCRARRMD 583

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           +A  +  KM + G+ PD+V    L+H +  AGN++ A      +   GF P+   + +  
Sbjct: 584 EANALFLKMLDAGLKPDLVLYNNLIHGFCSAGNMNAACNLVAMMIDDGFLPNITTHRAFA 643

Query: 335 MAY 337
           + +
Sbjct: 644 LGF 646



 Score = 43.9 bits (102), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 36/175 (20%), Positives = 74/175 (42%)

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
           G +  E +Y  L+  +     V  A  + + +++    P++  C  L++A  ++   D A
Sbjct: 179 GTKDLETVYSMLVDCYVTESKVSLALNLIHEIKLLNIFPSMGVCNSLLKALLRSHQLDLA 238

Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476
               + M   G   +    +  I +Y  +  +     +L+E++  G +     YT+++D 
Sbjct: 239 WDILEGMQSFGMHLNASILSLFIESYCAEGNIQSGWKILMEMKNYGIKADVIAYTIVIDA 298

Query: 477 LGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK 531
           L ++  +  A  LL K+   G +       S+ D Y + G   KA+  L F   +
Sbjct: 299 LCKISCVKVATSLLFKMIHCGISVDSVSVSSVIDGYCKKGRSDKAINLLNFFNVR 353


>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g02150-like [Cucumis
           sativus]
          Length = 822

 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/373 (21%), Positives = 173/373 (46%), Gaps = 10/373 (2%)

Query: 218 LQPSRIDWINLLDRL-----REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC 272
           + PS   +  ++D L      E + +L+ ++ E+ LS +     V  Y+ LID + K   
Sbjct: 226 IAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPD-----VVTYNSLIDGYGKVGS 280

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           LE+   +  +M + G VPDI+T   L++ Y K   + RA E F  ++++G +P+   Y++
Sbjct: 281 LEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYST 340

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I A+   G  +  + L+  M  +G+  +E  Y +L+ +  + G++  A ++ N M    
Sbjct: 341 LIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAG 400

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
            +  + + T L++   +AG   +A   F  M++ G  P+ +   +++  Y K   ++ A+
Sbjct: 401 VKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAM 460

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
            +L ++ +   +P    Y  ++      + + E + +L ++   G +    I  ++ D Y
Sbjct: 461 KILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAY 520

Query: 513 ARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572
            +AG    AL     ++    +     +  +I+GL   G ++ A      M + G   + 
Sbjct: 521 FKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNV 580

Query: 573 RLKVALISSQTFN 585
            +  +LI     N
Sbjct: 581 AVYTSLIDGLCXN 593



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 140/320 (43%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LIDA+ K   L +A ++L  M + G+  +IVT T L+    KAG +  A+E F S+ 
Sbjct: 373 YTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSML 432

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P+++VY +++  Y+ A + +  M ++  M    I+    +Y +++        + 
Sbjct: 433 KDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLE 492

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
               I   M+           T +++AY +AG    A + F  M  +G +        +I
Sbjct: 493 ETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLI 552

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
               +  +++ A++    +   G +P  A YT L+D L     I  A++L  ++   G  
Sbjct: 553 DGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMT 612

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P      +L D   + G  ++AL  +  +     +     +  +++G    G L  A++ 
Sbjct: 613 PDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKF 672

Query: 560 HGLMEAQGFAASERLKVALI 579
              M  +G    E L + L+
Sbjct: 673 FNEMIEKGILPEEVLCICLL 692



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 127/283 (44%)

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           VL  ++ + G L+ A E F  +R+    P  +  N ++     +G  +L     + MI +
Sbjct: 165 VLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDMIGA 224

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
           GI  S   Y  ++    + GD+  + ++   MR     P + +   L++ YG+ G  ++ 
Sbjct: 225 GIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEV 284

Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476
            S F+ M  +G  PD      +I  Y K   + +A     E++ +G +P   TY+ L+D 
Sbjct: 285 ASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDA 344

Query: 477 LGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG 536
             +  ++  A +LL  +   G  P      SL D   +AG   +A + L  +     ++ 
Sbjct: 345 FCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLN 404

Query: 537 PDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
              +  +++GL   G + +A+ V   M   G + ++++  AL+
Sbjct: 405 IVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALV 447



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/302 (23%), Positives = 140/302 (46%), Gaps = 6/302 (1%)

Query: 218 LQPSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L P+   + +L+D   +  N    +K+   +L +   + N+  Y+ L+D   K   + +A
Sbjct: 366 LLPNEFTYTSLIDANCKAGNLTEAWKLLNDML-QAGVKLNIVTYTALLDGLCKAGRMIEA 424

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
           E + + M ++GI P+    T LVH Y KA  ++ A +  + +     +PD  +Y S+I  
Sbjct: 425 EEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWG 484

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           + +  + +    +++ M + GI  +  I   ++ ++ + G    A      M+    + T
Sbjct: 485 HCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEAT 544

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           + +  +L++   +AG  + A   F  M+ LG +P+     S+I      N ++ A  L  
Sbjct: 545 IVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFD 604

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLIN--EAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
           E++  G  P    +T L+D  G L+  N  EA  L+ +++EL       +  SL   +++
Sbjct: 605 EMQCRGMTPDITAFTALID--GNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQ 662

Query: 515 AG 516
            G
Sbjct: 663 CG 664



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 120/283 (42%), Gaps = 8/283 (2%)

Query: 242 KVAELVLSEESFQTNVRD--------YSKLIDAHAKENCLEDAERILKKMNENGIVPDIV 293
           K   ++ +EE F++ ++D        Y+ L+  + K   +EDA +ILK+M E  I PD++
Sbjct: 417 KAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLI 476

Query: 294 TSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMM 353
               ++  +     L+  K   E ++S G   +  +  ++I AY  AG+    ++    M
Sbjct: 477 LYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEM 536

Query: 354 ITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDP 413
              G+E +   Y  L+    + G V  A      M     QP +   T L++        
Sbjct: 537 QDVGVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCI 596

Query: 414 DQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVL 473
           + A+  FD M   G  PD     ++I    K   L +AL L+  + +   E     YT L
Sbjct: 597 ESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSL 656

Query: 474 VDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
           V    +   +++A +   ++ E G  P   + + L   Y + G
Sbjct: 657 VSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYKRG 699



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 139/308 (45%), Gaps = 4/308 (1%)

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
             +    M   GI P + T  V++    K G+L+ ++  F  +R  G  PD   YNS+I 
Sbjct: 214 VRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLID 273

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
            Y   G  +   SL + M   G       Y  L+  + +   +  A +  + M+    +P
Sbjct: 274 GYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKP 333

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
            + + + L++A+ + G    A      M R G  P++    S+I A  K   L +A  LL
Sbjct: 334 NVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLL 393

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
            ++ + G +    TYT L+D L +   + EAE++   + + G +P  ++  +L   Y +A
Sbjct: 394 NDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKA 453

Query: 516 GIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASER 573
              + A++ L   +  +  + PD   +  II G  +   L++ + +   M+++G +A+  
Sbjct: 454 ERMEDAMKILK--QMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPV 511

Query: 574 LKVALISS 581
           +   +I +
Sbjct: 512 ISTTIIDA 519



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 96/237 (40%), Gaps = 21/237 (8%)

Query: 165 WTEVAEKIHERGEMILPE------EPKPITGKCKLITDKILSLEKEEDPSPLLAEWKEL- 217
           W   +++  E  ++IL E         P+      I D      K  D      E +++ 
Sbjct: 483 WGHCSQRKLEETKLILEEMKSRGISANPVIST--TIIDAYFKAGKSSDALNFFQEMQDVG 540

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLS------EESFQTNVRDYSKLIDAHAKEN 271
           ++ + + +  L+D L E        + EL +           Q NV  Y+ LID     N
Sbjct: 541 VEATIVTYCVLIDGLCEAG------IVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNN 594

Query: 272 CLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYN 331
           C+E A+++  +M   G+ PDI   T L+    K GNL  A      +     + D  VY 
Sbjct: 595 CIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYT 654

Query: 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIM 388
           S++  +   G+        + MI  GI   E + + LLR + + G +  A ++ N M
Sbjct: 655 SLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYKRGQLDEAIELKNEM 711



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/252 (21%), Positives = 105/252 (41%), Gaps = 35/252 (13%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           ++E + + ++  Y  +I  H  +  LE+ + IL++M   GI  + V ST ++  Y KAG 
Sbjct: 466 MTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGK 525

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
              A   F+ ++  G +     Y  +I     AG  +L +     M++ G++ +  +Y +
Sbjct: 526 SSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTS 585

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVE---------------------- 405
           L+        +  A ++ + M+     P + + T L++                      
Sbjct: 586 LIDGLCXNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELA 645

Query: 406 -------------AYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
                         + Q G+  QAR  F+ MI  G  P++     ++  Y K+  LD+A+
Sbjct: 646 IEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYKRGQLDEAI 705

Query: 453 NLLLELEKDGFE 464
            L  E+E+  + 
Sbjct: 706 ELKNEMERMAYS 717



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 90/222 (40%), Gaps = 4/222 (1%)

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
           ++  L   F + G +  A +  + MR     P   SC  L+    ++G+    R  F+ M
Sbjct: 162 VFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDM 221

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483
           I  G  P       MI    K+  L+ +  L +++ + G  P   TY  L+D  G++  +
Sbjct: 222 IGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSL 281

Query: 484 NEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFE 541
            E   L  ++ ++G  P       L + Y +     +A +   F E K   + P+   + 
Sbjct: 282 EEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEY--FSEMKNNGLKPNVVTYS 339

Query: 542 RIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQT 583
            +I+     G +Q A ++   M   G   +E    +LI +  
Sbjct: 340 TLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANC 381


>gi|125542535|gb|EAY88674.1| hypothetical protein OsI_10149 [Oryza sativa Indica Group]
          Length = 333

 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 130/284 (45%), Gaps = 2/284 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ L++   KE  L DAE +L +M E G+ PD+ T T L+H Y   G LD+A + F
Sbjct: 50  DVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLF 109

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           +++ +   +PD   YN++I      G       L D M +  I  +   Y  L+ S  + 
Sbjct: 110 DTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEK 169

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G V  A    + M  +   P + +   +++ Y ++G+  + +     M+     PD    
Sbjct: 170 GQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITY 229

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I  Y K++ +  A  LL  +EK+  +P   TY +L++       + EA  +  K+  
Sbjct: 230 NTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCA 289

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD 539
            G  P     +S+ + +  AG  K+A Q     E  +    PDD
Sbjct: 290 KGIEPDRYTYMSMINGHVTAGNSKEAFQLHD--EMLQRGFAPDD 331



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 109/217 (50%), Gaps = 2/217 (0%)

Query: 218 LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L+P  + +  L+D + R+ +      + + + S E F  +V  YS LID+H ++  +EDA
Sbjct: 117 LRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVT-YSILIDSHCEKGQVEDA 175

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
              L +M   GI+P+I+T   ++  Y ++GN+ + ++  + +  +   PD   YN++I  
Sbjct: 176 FGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHG 235

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           Y+   +      L++MM    ++     Y  L+  F+  G+V+ AG I   M  +  +P 
Sbjct: 236 YIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPD 295

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
             +   ++  +  AG+  +A    D M++ G  PDD+
Sbjct: 296 RYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAPDDK 332



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 72/319 (22%), Positives = 136/319 (42%), Gaps = 8/319 (2%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +I    +   + DA R+  +M   G +PD+VT   L++   K   L  A+     +R
Sbjct: 19  YTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMR 78

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  PD   + ++I  Y   G+    + L D M+   +      Y  L+    + GD+ 
Sbjct: 79  ERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLD 138

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  + + M   E  P   + ++L++++ + G  + A    D MI  G  P+     S+I
Sbjct: 139 KANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSII 198

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             Y +   + K    L ++  +   P   TY  L+    +   +++A +LL  + +    
Sbjct: 199 KGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQ 258

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG--PDDFE--RIINGLLAGGFLQD 555
           P       L + ++  G     +Q  G++  K    G  PD +    +ING +  G  ++
Sbjct: 259 PDVVTYNMLINGFSVHG----NVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKE 314

Query: 556 AQRVHGLMEAQGFAASERL 574
           A ++H  M  +GFA  ++ 
Sbjct: 315 AFQLHDEMLQRGFAPDDKF 333



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 98/216 (45%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
            +  + ++  Y+ LID   ++  L+ A  +   M+   I P+ VT ++L+  + + G ++
Sbjct: 114 NQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVE 173

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A    + + + G  P+   YNS+I  Y  +G    G   +  M+ + +      Y  L+
Sbjct: 174 DAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLI 233

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
             + +   +  A ++ N+M  E+ QP + +  +L+  +   G+  +A   F+ M   G +
Sbjct: 234 HGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIE 293

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
           PD     SMI  +       +A  L  E+ + GF P
Sbjct: 294 PDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAP 329



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 63/304 (20%), Positives = 129/304 (42%)

Query: 280 LKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339
           L++M   G+VPD V  T+++  + +AG +  A    + +   G  PD   YN+++     
Sbjct: 4   LREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCK 63

Query: 340 AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLES 399
             +      L++ M   G+      +  L+  +   G +  A Q+ + M  +  +P + +
Sbjct: 64  ERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVT 123

Query: 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELE 459
              L++   + GD D+A   +D M      P+    + +I ++ +K  ++ A   L E+ 
Sbjct: 124 YNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMI 183

Query: 460 KDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEK 519
             G  P   TY  ++    R   +++ ++ L K+     +P      +L   Y +     
Sbjct: 184 NKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMH 243

Query: 520 KALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
            A + L  +E +K Q     +  +ING    G +Q+A  +   M A+G        +++I
Sbjct: 244 DAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMI 303

Query: 580 SSQT 583
           +   
Sbjct: 304 NGHV 307


>gi|218184813|gb|EEC67240.1| hypothetical protein OsI_34171 [Oryza sativa Indica Group]
          Length = 458

 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 121/252 (48%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ +I+   KE   + A     +M    I P++VT + ++    KA  +D+A E  
Sbjct: 203 DVVSYTTVINGFFKEGDSDKAYSTYHEMLGRRISPNVVTYSSIIAALCKAQAMDKAMEVL 262

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
            ++  +G  PD   Y+S++  Y ++GQPK  +  ++ M + G+E +   Y +L+    + 
Sbjct: 263 NTMVKNGVMPDCMTYSSILHGYCSSGQPKEDIGTLNKMRSDGVEPNVVTYRSLMNYLCKN 322

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G    A +I + M     +P + +   L++ Y   G   +  +  D M+R G +PD    
Sbjct: 323 GRCTKARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVF 382

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +I AY K+  +D+A+ +  ++ + G  P    Y  ++D L +   +++A     ++ +
Sbjct: 383 NILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMID 442

Query: 496 LGEAPPFKIQVS 507
            G  P   + VS
Sbjct: 443 EGLTPNIILSVS 454



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 71/159 (44%)

Query: 200 SLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRD 259
           S + +ED   L     + ++P+ + + +L++ L +       +     +++   + ++  
Sbjct: 287 SGQPKEDIGTLNKMRSDGVEPNVVTYRSLMNYLCKNGRCTKARKIFDSMTKRGLEPDIAT 346

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  L+  +A +  L +   +L  M  NGI PD     +L+  Y+K   +D+A   F  +R
Sbjct: 347 YRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMR 406

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
            HG  P+   Y ++I     +G     M   + MI  G+
Sbjct: 407 QHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGL 445



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 74/329 (22%), Positives = 126/329 (38%), Gaps = 39/329 (11%)

Query: 276 AERILKKMNENG---IVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           A  +  +M   G   + PD+ T ++L+    +AG LD    A  ++   GF+ +   +  
Sbjct: 76  AVSLFNRMARAGADEVTPDLCTYSILIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFAP 135

Query: 333 MIMAYVNAGQPKLGMSLV---------------DMMITSGI---ERSEEIYLALLRSFAQ 374
           ++       +    M +V                 ++  G+    RS+E  L LL   A 
Sbjct: 136 LLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEA-LELLHMMA- 193

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
             D RG G            P + S T ++  + + GD D+A S +  M+     P+   
Sbjct: 194 --DDRGGGS----------PPDVVSYTTVINGFFKEGDSDKAYSTYHEMLGRRISPNVVT 241

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
            +S+IAA  K   +DKA+ +L  + K+G  P   TY+ ++          E    L K+ 
Sbjct: 242 YSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYSSILHGYCSSGQPKEDIGTLNKMR 301

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGF 552
             G  P      SL +   + G   KA +   F    K  + PD   +  ++ G    G 
Sbjct: 302 SDGVEPNVVTYRSLMNYLCKNGRCTKARKI--FDSMTKRGLEPDIATYRTLLQGYATKGA 359

Query: 553 LQDAQRVHGLMEAQGFAASERLKVALISS 581
           L +   +  LM   G      +   LI +
Sbjct: 360 LVEMHALLDLMVRNGIQPDHHVFNILICA 388



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 54/131 (41%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +  +  + NV  Y  L++   K      A +I   M + G+ PDI T   L+  Y+  G 
Sbjct: 300 MRSDGVEPNVVTYRSLMNYLCKNGRCTKARKIFDSMTKRGLEPDIATYRTLLQGYATKGA 359

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L       + +  +G QPD  V+N +I AY    +    M +   M   G+  +   Y  
Sbjct: 360 LVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGT 419

Query: 368 LLRSFAQCGDV 378
           ++    + G V
Sbjct: 420 VIDVLCKSGSV 430


>gi|413924892|gb|AFW64824.1| hypothetical protein ZEAMMB73_716034 [Zea mays]
          Length = 721

 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 148/354 (41%), Gaps = 19/354 (5%)

Query: 194 ITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKVAELV----- 247
           I   +L  E+ E      AE + + L P  I + +LL+R        Y K   L      
Sbjct: 349 IIHGLLKCEQAEAAQVKFAEMRAMGLLPDVITYNSLLNR--------YCKAGNLKEALWL 400

Query: 248 ---LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK 304
              L        V  Y+ LID + +   L +A R+ ++M E G  PD+ T T+L++   K
Sbjct: 401 LGDLRRAGLAPTVLTYNTLIDGYCRLGDLAEARRLKEEMVEQGCFPDVCTYTILMNGSRK 460

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
             NL  A+E F+ + S G QPD   YN+ I A +      +   L ++M+  GI      
Sbjct: 461 VRNLAMAREFFDEMLSKGLQPDCFAYNTRICAELTLSSTPMAFQLREVMMLKGIYPDTVT 520

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
           Y  ++    + G+++ A ++   M  +  QP   + T L+ A+ + G   +AR   + M+
Sbjct: 521 YNVIIDGLCKTGNLKDAKRLKTKMVSDGLQPDCITYTCLIHAHCERGLLREARKLLNGMV 580

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
             G +P       ++    ++  L  A     ++   G EP   TY VL+  L       
Sbjct: 581 SDGLQPSVVTYTILVHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCMTGRTP 640

Query: 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
            A +   ++ E G AP       L D   R G    A++   + E  +  + PD
Sbjct: 641 LAFRHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRL--YFEMHQNGIPPD 692



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 118/266 (44%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI A  +   +  AE +  +M   GI+P +VT   ++H   K    + A+  F  +R
Sbjct: 311 YNPLITALLERGFVRKAEALQMEMENEGIMPTVVTYNAIIHGLLKCEQAEAAQVKFAEMR 370

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G  PD   YNS++  Y  AG  K  + L+  +  +G+  +   Y  L+  + + GD+ 
Sbjct: 371 AMGLLPDVITYNSLLNRYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGDLA 430

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++   M  +   P + + T+L+    +  +   AR  FD M+  G +PD     + I
Sbjct: 431 EARRLKEEMVEQGCFPDVCTYTILMNGSRKVRNLAMAREFFDEMLSKGLQPDCFAYNTRI 490

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            A    +    A  L   +   G  P   TY V++D L +   + +A++L  K+   G  
Sbjct: 491 CAELTLSSTPMAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQ 550

Query: 500 PPFKIQVSLCDMYARAGIEKKALQAL 525
           P       L   +   G+ ++A + L
Sbjct: 551 PDCITYTCLIHAHCERGLLREARKLL 576



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 81/360 (22%), Positives = 138/360 (38%), Gaps = 45/360 (12%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +  E     V  Y+ +I    K    E A+    +M   G++PD++T   L++ Y KAGN
Sbjct: 334 MENEGIMPTVVTYNAIIHGLLKCEQAEAAQVKFAEMRAMGLLPDVITYNSLLNRYCKAGN 393

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY-- 365
           L  A      LR  G  P    YN++I  Y   G       L + M+  G       Y  
Sbjct: 394 LKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGDLAEARRLKEEMVEQGCFPDVCTYTI 453

Query: 366 ----------LALLRSFAQ------------------CGDVR-----GAGQITNIMRIEE 392
                     LA+ R F                    C ++       A Q+  +M ++ 
Sbjct: 454 LMNGSRKVRNLAMAREFFDEMLSKGLQPDCFAYNTRICAELTLSSTPMAFQLREVMMLKG 513

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P   +  ++++   + G+   A+     M+  G +PD      +I A+ ++ LL +A 
Sbjct: 514 IYPDTVTYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQPDCITYTCLIHAHCERGLLREAR 573

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP---PFKIQVSLC 509
            LL  +  DG +P   TYT+LV    R   +  A     K+ ++G  P    + + +   
Sbjct: 574 KLLNGMVSDGLQPSVVTYTILVHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHAL 633

Query: 510 DMYARAGIEKKALQALGFLEAKKEQMGPDDFER--IINGLLAGGFLQDAQRVHGLMEAQG 567
            M  R  +  +      F E  +  + P+ +    +I+G    G   DA R++  M   G
Sbjct: 634 CMTGRTPLAFRH-----FHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQNG 688



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 138/367 (37%), Gaps = 42/367 (11%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +VRD ++++         +D   +  +M +  + P IVT   L+  + K G  D A    
Sbjct: 201 DVRDCNRVLRVLRDAARWDDVRAVYGEMLQLRVEPTIVTYNTLLDSFLKEGRKDEASMLL 260

Query: 316 ESLRSHG--FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
           + + + G  F  +   +N +I      G  +  + LVD M  S  + S   Y  L+ +  
Sbjct: 261 KEMETQGGGFSLNDVTFNVVISFLAREGHLENAVKLVDSMRLSK-KASSFTYNPLITALL 319

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           + G VR A  +   M  E   PT+ +   ++    +    + A+  F  M  +G  PD  
Sbjct: 320 ERGFVRKAEALQMEMENEGIMPTVVTYNAIIHGLLKCEQAEAAQVKFAEMRAMGLLPDVI 379

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
              S++  Y K   L +AL LL +L + G  P   TY  L+D   RL  + EA +L  ++
Sbjct: 380 TYNSLLNRYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGDLAEARRLKEEM 439

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFER----------- 542
            E G  P       L  M     +   A+    F E   + + PD F             
Sbjct: 440 VEQGCFPDVCTYTIL--MNGSRKVRNLAMAREFFDEMLSKGLQPDCFAYNTRICAELTLS 497

Query: 543 --------------------------IINGLLAGGFLQDAQRVHGLMEAQGFAASERLKV 576
                                     II+GL   G L+DA+R+   M + G         
Sbjct: 498 STPMAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQPDCITYT 557

Query: 577 ALISSQT 583
            LI +  
Sbjct: 558 CLIHAHC 564



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 110/258 (42%), Gaps = 7/258 (2%)

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
           AF  +  HG  PD +  N ++    +A +     ++   M+   +E +   Y  LL SF 
Sbjct: 189 AFRLVTCHGVAPDVRDCNRVLRVLRDAARWDDVRAVYGEMLQLRVEPTIVTYNTLLDSFL 248

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCT--LLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
           + G    A  +   M  +    +L   T  +++    + G  + A    D M RL  K  
Sbjct: 249 KEGRKDEASMLLKEMETQGGGFSLNDVTFNVVISFLAREGHLENAVKLVDSM-RLSKKAS 307

Query: 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
                 +I A  ++  + KA  L +E+E +G  P   TY  ++  L + +    A+    
Sbjct: 308 SFTYNPLITALLERGFVRKAEALQMEMENEGIMPTVVTYNAIIHGLLKCEQAEAAQVKFA 367

Query: 492 KISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLA 549
           ++  +G  P      SL + Y +AG  K+AL  LG  + ++  + P    +  +I+G   
Sbjct: 368 EMRAMGLLPDVITYNSLLNRYCKAGNLKEALWLLG--DLRRAGLAPTVLTYNTLIDGYCR 425

Query: 550 GGFLQDAQRVHGLMEAQG 567
            G L +A+R+   M  QG
Sbjct: 426 LGDLAEARRLKEEMVEQG 443



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 66/280 (23%), Positives = 103/280 (36%), Gaps = 42/280 (15%)

Query: 258 RDYSKLIDAHAKENCLEDAERILKKMNENGIVPD-------------------------- 291
           RD      A     CL       + +  +G+ PD                          
Sbjct: 172 RDTRHATPAACSTLCLA----AFRLVTCHGVAPDVRDCNRVLRVLRDAARWDDVRAVYGE 227

Query: 292 ---------IVTSTVLVHMYSKAGNLDRAKEAFESLRSH--GFQPDKKVYNSMIMAYVNA 340
                    IVT   L+  + K G  D A    + + +   GF  +   +N +I      
Sbjct: 228 MLQLRVEPTIVTYNTLLDSFLKEGRKDEASMLLKEMETQGGGFSLNDVTFNVVISFLARE 287

Query: 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
           G  +  + LVD M  S  + S   Y  L+ +  + G VR A  +   M  E   PT+ + 
Sbjct: 288 GHLENAVKLVDSMRLSK-KASSFTYNPLITALLERGFVRKAEALQMEMENEGIMPTVVTY 346

Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
             ++    +    + A+  F  M  +G  PD     S++  Y K   L +AL LL +L +
Sbjct: 347 NAIIHGLLKCEQAEAAQVKFAEMRAMGLLPDVITYNSLLNRYCKAGNLKEALWLLGDLRR 406

Query: 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
            G  P   TY  L+D   RL  + EA +L  ++ E G  P
Sbjct: 407 AGLAPTVLTYNTLIDGYCRLGDLAEARRLKEEMVEQGCFP 446



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 61/161 (37%), Gaps = 12/161 (7%)

Query: 218 LQPSRIDWINLLDR------LREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKEN 271
           LQP  I +  L+        LRE    L   V++        Q +V  Y+ L+    +  
Sbjct: 549 LQPDCITYTCLIHAHCERGLLREARKLLNGMVSD------GLQPSVVTYTILVHTCCRRG 602

Query: 272 CLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYN 331
            L  A    +KM + GI P+ +T  VL+H     G    A   F  +   G  P+K  Y 
Sbjct: 603 NLYSAYGWFRKMLDVGIEPNEITYNVLIHALCMTGRTPLAFRHFHEMLERGLAPNKYTYT 662

Query: 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
            +I      G     + L   M  +GI      + AL + F
Sbjct: 663 LLIDGNCREGNWADAIRLYFEMHQNGIPPDYCTHNALFKGF 703


>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g02150
 gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 761

 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 148/336 (44%), Gaps = 6/336 (1%)

Query: 258 RDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFES 317
           R  + L+   AK    +D +R  K M   G  P + T  +++    K G+++ A+  FE 
Sbjct: 228 RSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEE 287

Query: 318 LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
           ++  G  PD   YNSMI  +   G+    +   + M     E     Y AL+  F + G 
Sbjct: 288 MKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGK 347

Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
           +    +    M+    +P + S + LV+A+ + G   QA   +  M R+G  P++    S
Sbjct: 348 LPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTS 407

Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           +I A  K   L  A  L  E+ + G E    TYT L+D L   + + EAE+L GK+   G
Sbjct: 408 LIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAG 467

Query: 498 EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQD 555
             P      +L   + +A    +AL+ L   E K   + PD   +   I GL +   ++ 
Sbjct: 468 VIPNLASYNALIHGFVKAKNMDRALELLN--ELKGRGIKPDLLLYGTFIWGLCSLEKIEA 525

Query: 556 AQRVHGLMEAQGFAASERLKVALISSQTFNRQRQPT 591
           A+ V   M+  G  A+  +   L+ +  + +   PT
Sbjct: 526 AKVVMNEMKECGIKANSLIYTTLMDA--YFKSGNPT 559



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 134/282 (47%), Gaps = 3/282 (1%)

Query: 218 LQPSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L P+   + +L+D   +  N    F++   +L +   + NV  Y+ LID       +++A
Sbjct: 398 LVPNEYTYTSLIDANCKIGNLSDAFRLGNEML-QVGVEWNVVTYTALIDGLCDAERMKEA 456

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
           E +  KM+  G++P++ +   L+H + KA N+DRA E    L+  G +PD  +Y + I  
Sbjct: 457 EELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWG 516

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
             +  + +    +++ M   GI+ +  IY  L+ ++ + G+      + + M+  + + T
Sbjct: 517 LCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVT 576

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIR-LGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
           + +  +L++   +     +A   F+ +    G + +     +MI    K N ++ A  L 
Sbjct: 577 VVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLF 636

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
            ++ + G  P    YT L+D   +   + EA  L  K++E+G
Sbjct: 637 EQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIG 678



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 131/288 (45%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +ID   K   L+D     ++M +    PD++T   L++ + K G L    E +  ++
Sbjct: 300 YNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMK 359

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
            +G +P+   Y++++ A+   G  +  +     M   G+  +E  Y +L+ +  + G++ 
Sbjct: 360 GNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLS 419

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++ N M     +  + + T L++    A    +A   F  M   G  P+     ++I
Sbjct: 420 DAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALI 479

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             + K   +D+AL LL EL+  G +P    Y   +  L  L+ I  A+ ++ ++ E G  
Sbjct: 480 HGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIK 539

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
               I  +L D Y ++G   + L  L  ++    ++    F  +I+GL
Sbjct: 540 ANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGL 587



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 90/208 (43%), Gaps = 1/208 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E   + N   Y+ L+DA+ K     +   +L +M E  I   +VT  VL+    K   
Sbjct: 533 MKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKL 592

Query: 308 LDRAKEAFESLRS-HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           + +A + F  + +  G Q +  ++ +MI       Q +   +L + M+  G+      Y 
Sbjct: 593 VSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYT 652

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           +L+    + G+V  A  + + M     +  L + T LV          +ARS  + MI  
Sbjct: 653 SLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGE 712

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNL 454
           G  PD+    S++  + +   +D+A+ L
Sbjct: 713 GIHPDEVLCISVLKKHYELGCIDEAVEL 740



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 83/173 (47%), Gaps = 6/173 (3%)

Query: 210 LLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKVAEL---VLSEESFQTNVRDYSKLID 265
           LL E KEL ++ + + +  L+D L +   +L  K  +    + ++   Q N   ++ +ID
Sbjct: 564 LLDEMKELDIEVTVVTFCVLIDGLCKN--KLVSKAVDYFNRISNDFGLQANAAIFTAMID 621

Query: 266 AHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQP 325
              K+N +E A  + ++M + G+VPD    T L+    K GN+  A    + +   G + 
Sbjct: 622 GLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKL 681

Query: 326 DKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
           D   Y S++    +  Q +   S ++ MI  GI   E + +++L+   + G +
Sbjct: 682 DLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLKKHYELGCI 734



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/222 (19%), Positives = 88/222 (39%), Gaps = 4/222 (1%)

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
           ++ AL       G +  A Q  + M+     P   SC  L+  + + G  D  +  F  M
Sbjct: 194 VFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDM 253

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483
           I  G +P       MI    K+  ++ A  L  E++  G  P   TY  ++D  G++  +
Sbjct: 254 IGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRL 313

Query: 484 NEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFE 541
           ++      ++ ++   P      +L + + + G     L+   + E K   + P+   + 
Sbjct: 314 DDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEF--YREMKGNGLKPNVVSYS 371

Query: 542 RIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQT 583
            +++     G +Q A + +  M   G   +E    +LI +  
Sbjct: 372 TLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANC 413



 Score = 45.4 bits (106), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 49/238 (20%), Positives = 93/238 (39%), Gaps = 18/238 (7%)

Query: 198 ILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKVAELV--------L 248
           + SLEK E    ++ E KE  ++ + + +  L+D         YFK             +
Sbjct: 517 LCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDA--------YFKSGNPTEGLHLLDEM 568

Query: 249 SEESFQTNVRDYSKLIDAHAKENCLEDAERILKKM-NENGIVPDIVTSTVLVHMYSKAGN 307
            E   +  V  +  LID   K   +  A     ++ N+ G+  +    T ++    K   
Sbjct: 569 KELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQ 628

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           ++ A   FE +   G  PD+  Y S++      G     ++L D M   G++     Y +
Sbjct: 629 VEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTS 688

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
           L+   + C  ++ A      M  E   P    C  +++ + + G  D+A     Y+++
Sbjct: 689 LVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLKKHYELGCIDEAVELQSYLMK 746


>gi|224160015|ref|XP_002338159.1| predicted protein [Populus trichocarpa]
 gi|222871069|gb|EEF08200.1| predicted protein [Populus trichocarpa]
          Length = 368

 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 139/315 (44%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           +Q +V  Y+ +I+   K      A  + KKM E G  PD+VT + ++    K   ++ A 
Sbjct: 6   YQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRRVNEAL 65

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           + F  +++ G  P+   YNS+I    N  + +   ++++ M++  I  +   +  L+  F
Sbjct: 66  DIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIF 125

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + G+V  A  +   M     +P + + + L+  Y    +  +AR  FD MI  G KPD 
Sbjct: 126 CKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKGCKPDV 185

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
                +I  Y K   + +A  L  E+   G  P   +Y  L+D L +L  + EA  L   
Sbjct: 186 FSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKN 245

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
           +   G  P       L D + + G   KA +    +++   +     +  +I+ +     
Sbjct: 246 MLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRN 305

Query: 553 LQDAQRVHGLMEAQG 567
           L++A+++   +  QG
Sbjct: 306 LKEARKLFSELFVQG 320



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 118/249 (47%), Gaps = 2/249 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  Y+ LI      +   +A  +L +M    I+P+IVT ++L++++ K GN+  A+   
Sbjct: 79  NIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVL 138

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           +++   G +P+   Y+S++  Y    +      L D+MIT G +     Y  L+  + + 
Sbjct: 139 KTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKGCKPDVFSYNILINGYCKA 198

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
             +  A Q+ N M  +   P + S   L++   Q G   +A   F  M+  G+ P D CT
Sbjct: 199 KRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLP-DLCT 257

Query: 436 ASMIA-AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
            S++   + K+  L KA  L   ++    +P    Y +L+D + + + + EA +L  ++ 
Sbjct: 258 YSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELF 317

Query: 495 ELGEAPPFK 503
             G  P  K
Sbjct: 318 VQGLQPNMK 326



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 63/310 (20%), Positives = 127/310 (40%)

Query: 283 MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
           M   G  PD+ T T +++   K G    A   F+ +   G QPD   Y+++I +     +
Sbjct: 1   MVARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRR 60

Query: 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402
               + +   M   GI  +   Y +L++        R A  + N M      P + + +L
Sbjct: 61  VNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSL 120

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           L+  + + G+  +AR     M  +G +P+    +S++  Y  +  + +A  L   +   G
Sbjct: 121 LINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKG 180

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522
            +P   +Y +L++   + + I EA+QL  ++   G  P      +L D   + G  ++A 
Sbjct: 181 CKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAH 240

Query: 523 QALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQ 582
                +           +  +++G    G+L  A R+   M++     +  +   LI + 
Sbjct: 241 DLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAM 300

Query: 583 TFNRQRQPTR 592
             +R  +  R
Sbjct: 301 CKSRNLKEAR 310



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/152 (19%), Positives = 77/152 (50%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           V+  +  + +V  Y+ LI+ + K   + +A+++  +M   G+ PDIV+   L+    + G
Sbjct: 175 VMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLG 234

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            L  A + F+++ ++G  PD   Y+ ++  +   G       L   M ++ ++ +  +Y 
Sbjct: 235 RLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYN 294

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398
            L+ +  +  +++ A ++ + + ++  QP ++
Sbjct: 295 ILIDAMCKSRNLKEARKLFSELFVQGLQPNMK 326


>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12300, mitochondrial; Flags: Precursor
 gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 118/245 (48%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  +S LID+  KE  L +AE + K+M   GI PD +T T L+  + K  +LD+A +  
Sbjct: 332 NVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMV 391

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + + S G  P+ + +N +I  Y  A +   G+ L   M   G+      Y  L++ F + 
Sbjct: 392 DLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCEL 451

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A ++   M   +  P + +  +L++     G+ ++A   F+ + +   + D    
Sbjct: 452 GKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIY 511

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +I      + +D A +L   L   G +PG  TY +++  L +   ++EAE L  K+ E
Sbjct: 512 NIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEE 571

Query: 496 LGEAP 500
            G AP
Sbjct: 572 DGHAP 576



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 128/309 (41%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E   Q N   Y  +++   K      A  +L+KM E  I  D V  ++++    K G+
Sbjct: 219 MVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGS 278

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           LD A   F  +   G   +   YN +I  + NAG+   G  L+  MI   I  +   +  
Sbjct: 279 LDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSV 338

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+ SF + G +R A ++   M      P   + T L++ + +    D+A    D M+  G
Sbjct: 339 LIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKG 398

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P+ R    +I  Y K N +D  L L  ++   G      TY  L+     L  +N A+
Sbjct: 399 CDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAK 458

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
           +L  ++      P       L D     G  +KAL+    +E  K ++    +  II+G+
Sbjct: 459 ELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGM 518

Query: 548 LAGGFLQDA 556
                + DA
Sbjct: 519 CNASKVDDA 527



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/267 (22%), Positives = 128/267 (47%), Gaps = 4/267 (1%)

Query: 218 LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           + P  I + +L+D   +E +     ++ +L++S+     N+R ++ LI+ + K N ++D 
Sbjct: 364 IAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGC-DPNIRTFNILINGYCKANRIDDG 422

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
             + +KM+  G+V D VT   L+  + + G L+ AKE F+ + S    P+   Y  ++  
Sbjct: 423 LELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDG 482

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
             + G+ +  + + + +  S +E    IY  ++        V  A  +   + ++  +P 
Sbjct: 483 LCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPG 542

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           +++  +++    + G   +A   F  M   GH PD      +I A+       K++ L+ 
Sbjct: 543 VKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIE 602

Query: 457 ELEKDGFEPGPATYTVLVDWL--GRLQ 481
           EL++ GF    +T  +++D L  GRL+
Sbjct: 603 ELKRCGFSVDASTIKMVIDMLSDGRLK 629



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/322 (22%), Positives = 127/322 (39%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E + + +   YS +ID   K   L++A  +  +M   GI  +I+T  +L+  +  AG 
Sbjct: 254 MEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGR 313

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            D   +    +      P+   ++ +I ++V  G+ +    L   MI  GI      Y +
Sbjct: 314 WDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTS 373

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+  F +   +  A Q+ ++M  +   P + +  +L+  Y +A   D     F  M   G
Sbjct: 374 LIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRG 433

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
              D     ++I  + +   L+ A  L  E+      P   TY +L+D L       +A 
Sbjct: 434 VVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKAL 493

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
           ++  KI +        I   +      A     A      L  K  + G   +  +I GL
Sbjct: 494 EIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGL 553

Query: 548 LAGGFLQDAQRVHGLMEAQGFA 569
              G L +A+ +   ME  G A
Sbjct: 554 CKKGPLSEAELLFRKMEEDGHA 575



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 113/263 (42%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           ++ N   +S LI+    E  + +A  ++ +M E G  PD++T   LV+    +G    A 
Sbjct: 154 YEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAM 213

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
              + +  +G QP+   Y  ++     +GQ  L M L+  M    I+     Y  ++   
Sbjct: 214 LLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGL 273

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + G +  A  + N M ++     + +  +L+  +  AG  D        MI+    P+ 
Sbjct: 274 CKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNV 333

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
              + +I ++ K+  L +A  L  E+   G  P   TYT L+D   +   +++A Q++  
Sbjct: 334 VTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDL 393

Query: 493 ISELGEAPPFKIQVSLCDMYARA 515
           +   G  P  +    L + Y +A
Sbjct: 394 MVSKGCDPNIRTFNILINGYCKA 416



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 76/355 (21%), Positives = 147/355 (41%), Gaps = 8/355 (2%)

Query: 220 PSRIDWINLLDRLREQNTQLYFKVAELV--LSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           P+ ID+  L   + +  T+ Y  V  L   +  +    N+   S +I+   +   L  A 
Sbjct: 86  PTVIDFSRLFSAIAK--TKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAF 143

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
             + K+ + G  P+ +T + L++     G +  A E  + +   G +PD    N+++   
Sbjct: 144 SAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGL 203

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
             +G+    M L+D M+  G + +   Y  +L    + G    A ++  + ++EE    L
Sbjct: 204 CLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMEL--LRKMEERNIKL 261

Query: 398 ESC--TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
           ++   +++++   + G  D A + F+ M   G   +      +I  +      D    LL
Sbjct: 262 DAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLL 321

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
            ++ K    P   T++VL+D   +   + EAE+L  ++   G AP      SL D + + 
Sbjct: 322 RDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKE 381

Query: 516 GIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAA 570
               KA Q +  + +K        F  +ING      + D   +   M  +G  A
Sbjct: 382 NHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVA 436



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 61/324 (18%), Positives = 122/324 (37%), Gaps = 35/324 (10%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
            V D+S+L  A AK    +    + K+M   GI  ++ T +++++ + +   L  A  A 
Sbjct: 87  TVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAM 146

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G++P+   ++++I      G+    + LVD M+  G                  
Sbjct: 147 GKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMG------------------ 188

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
                             +P L +   LV     +G   +A    D M+  G +P+    
Sbjct: 189 -----------------HKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTY 231

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             ++    K      A+ LL ++E+   +     Y++++D L +   ++ A  L  ++  
Sbjct: 232 GPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEM 291

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
            G          L   +  AG      + L  +  +K       F  +I+  +  G L++
Sbjct: 292 KGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLRE 351

Query: 556 AQRVHGLMEAQGFAASERLKVALI 579
           A+ +H  M  +G A       +LI
Sbjct: 352 AEELHKEMIHRGIAPDTITYTSLI 375


>gi|32489921|emb|CAE05513.1| OSJNBa0038P21.6 [Oryza sativa Japonica Group]
          Length = 648

 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/358 (23%), Positives = 153/358 (42%), Gaps = 2/358 (0%)

Query: 212 AEWKELLQPSRIDWINLLDRLREQNTQLYFKVAEL-VLSEESFQTNVRDYSKLIDAHAKE 270
           A  + L+ P      +L+D L  + T     +A    L       +V  Y+ LID  +KE
Sbjct: 18  APMRLLMLPPSTPTTSLIDVLPAECTGPELALAVFGRLLRTGLGPDVCSYNTLIDGFSKE 77

Query: 271 NCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVY 330
             ++ A  +  KM E  + PD+VT   L+    K   + +++   E +   G +P+ K Y
Sbjct: 78  GEVDKAYELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTY 137

Query: 331 NSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRI 390
           NS+I  Y  AG  K  + +   M +SG+        + + +  +   ++ A  I + M +
Sbjct: 138 NSLIYGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVL 197

Query: 391 EEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDK 450
           +  +P + S + L+  Y   G      S  + M+  G  P+ R    +I AY +  ++DK
Sbjct: 198 KGPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDK 257

Query: 451 ALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCD 510
           A+ +  +++  G  P   T+  ++  L R+  +++A      + ++G  P   +   L  
Sbjct: 258 AMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQ 317

Query: 511 MYARAGIEKKALQALGFLEAKK-EQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
                G   KA + +  +  K     G   F  IIN L   G + + + +  LM   G
Sbjct: 318 GCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLFKEGRVAEGKDIMDLMVQTG 375



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 70/337 (20%), Positives = 124/337 (36%), Gaps = 64/337 (18%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N R ++ LI+A+A+   ++ A  I + M   G++PD VT   ++    + G LD A   F
Sbjct: 238 NHRFFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKF 297

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA-LLRSFAQ 374
             +   G  P + VY  +I    N G+      L+  M+   I      Y + ++ +  +
Sbjct: 298 NHMVDIGVPPSEAVYRCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLFK 357

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF------------DY 422
            G V     I ++M     +P + +   L+E Y   G+ ++A                 Y
Sbjct: 358 EGRVAEGKDIMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEALHYLMLWHQLALNRIVTY 417

Query: 423 MIR-------LGHKPDDRCTASMIAAYG-------KKNLLDKALNLLLE----------- 457
           M R       + H+  +  T   I  YG       + N  D+A N+LLE           
Sbjct: 418 MARRTTAAKKMFHEMIESGTTVSIQTYGVVLGGLCRNNCTDEA-NMLLEKLFAMNVKFDI 476

Query: 458 -------------------------LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
                                    +   G  P   TY +++  L + +   EA+ L   
Sbjct: 477 ITFNIVISAMLKVGRRQEAKELFAAISTYGLVPTVHTYNLMISNLIKEESYEEADNLFIS 536

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLE 529
           + + G AP  ++   +  M  +     KA   L  ++
Sbjct: 537 VEKSGRAPDSRLLNHIVRMLLKKAEVAKASNYLSIID 573



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/292 (21%), Positives = 113/292 (38%), Gaps = 4/292 (1%)

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL 349
           P   T++++  + ++    + A   F  L   G  PD   YN++I  +   G+      L
Sbjct: 27  PSTPTTSLIDVLPAECTGPELALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVDKAYEL 86

Query: 350 VDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409
              MI   +      Y +L+    +  ++  + ++   M     +P  ++   L+  Y  
Sbjct: 87  FYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYST 146

Query: 410 AGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPAT 469
           AG   ++   F  M   G  P      S I A  + N + +A ++   +   G +P   +
Sbjct: 147 AGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNIIS 206

Query: 470 YTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLE 529
           Y+ L+              L+  +   G  P  +    L + YAR G+  KA+  L F +
Sbjct: 207 YSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAM--LIFED 264

Query: 530 AKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
            + + M PD   F  +I+ L   G L DA      M   G   SE +   LI
Sbjct: 265 MQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLI 316



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 42/85 (49%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E     +++ Y  ++    + NC ++A  +L+K+    +  DI+T  +++    K G   
Sbjct: 434 ESGTTVSIQTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMLKVGRRQ 493

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMI 334
            AKE F ++ ++G  P    YN MI
Sbjct: 494 EAKELFAAISTYGLVPTVHTYNLMI 518



 Score = 46.2 bits (108), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 43/239 (17%), Positives = 93/239 (38%)

Query: 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402
           P+L +++   ++ +G+      Y  L+  F++ G+V  A ++   M  +   P + +   
Sbjct: 45  PELALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNS 104

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           L++   +  +  ++    + M+  G +P+++   S+I  Y    +  +++ +  E+   G
Sbjct: 105 LIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYSTAGMWKESVRVFKEMSSSG 164

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522
             P        +  L R   I EA+ +   +   G  P      +L   YA  G      
Sbjct: 165 LIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNIISYSTLLHGYAAEGCFANMN 224

Query: 523 QALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
             +  + +K        F  +IN     G +  A  +   M+ +G          +ISS
Sbjct: 225 SLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISS 283


>gi|255660854|gb|ACU25596.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 418

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 107/216 (49%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           Q +V  YS LI+   KE  L++A  +  +M +NG+VP+ VT T L+H + K   +D A E
Sbjct: 203 QPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAME 262

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            ++ + S G  PD   YN++I      G+ K    L+D MI +G++  +  Y  L+    
Sbjct: 263 IYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDGSC 322

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           + GD+  A ++ N M  E  +    + T L+    + G    A      M+ +G KPD+ 
Sbjct: 323 KEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREGRAGDAEKMLREMLSVGLKPDNG 382

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPAT 469
               +I  + KK     A  LL E+++DG  PG  T
Sbjct: 383 TYTMIINEFCKKRDSKTASKLLREMQRDGPVPGVVT 418



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/298 (21%), Positives = 122/298 (40%), Gaps = 53/298 (17%)

Query: 214 WKELLQ---PSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQT--------NVRDYSK 262
           +KE+L+   P+ + + N+L        Q + K  E+ L++  F          +V  ++ 
Sbjct: 124 YKEVLECGYPASLYFFNIL-------MQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNT 176

Query: 263 LIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG 322
           LI+ + K   L++  R+   M+ +G  PD+ T ++L++   K G LD A E F  +  +G
Sbjct: 177 LINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNG 236

Query: 323 FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAG 382
             P+   + ++I  +    +  L M +   M++ G+                        
Sbjct: 237 LVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGL------------------------ 272

Query: 383 QITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAY 442
                       P L +   L+    + G+  Q     D MI  G KPD     ++I   
Sbjct: 273 -----------SPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDGS 321

Query: 443 GKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
            K+  L+ AL L  ++ ++        YT L+  L R     +AE++L ++  +G  P
Sbjct: 322 CKEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREGRAGDAEKMLREMLSVGLKP 379



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 61/287 (21%), Positives = 122/287 (42%), Gaps = 11/287 (3%)

Query: 243 VAELVLSEESFQ-TNVRDYSKLIDAHAKENCLEDAERILKKMNENGI-VPDIVTSTVLVH 300
           V E +L  +  Q ++   +S L+ A+ +   + DA +  +   ++ I VP      VL H
Sbjct: 51  VFEAILETKGTQISDFYVFSGLMIAYLESGFVRDAVQCFRLTKQHKIRVPFDTCRKVLEH 110

Query: 301 M----YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           +    Y K    D  KE  E     G+      +N ++  +   G+ +L  S+ D +   
Sbjct: 111 LMEFRYFKL-VWDFYKEVLEC----GYPASLYFFNILMQRFCKEGEMRLAQSVFDAITKW 165

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
           G+  S   +  L+  + + GD+    ++ + M     QP + + ++L+    + G  D+A
Sbjct: 166 GLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEA 225

Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476
              F+ M+  G  P+     ++I  + K   +D A+ +  ++   G  P   TY  L+  
Sbjct: 226 NELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYG 285

Query: 477 LGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
           L +   + +   L+ ++   G  P      +L D   + G  + AL+
Sbjct: 286 LCKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALE 332


>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
 gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
          Length = 695

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 154/324 (47%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ LID + K   LE+ E+++ +M ++G   D+VT   L++ +SK G +++A   F
Sbjct: 234 DVVTYNSLIDGYGKCGDLEEVEQLVSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYF 293

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             ++  G   +   +++ + A+   G  +  M L   M   G+  +E  Y +L+    + 
Sbjct: 294 GEMKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKA 353

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A  + + M  +   P + + T++V+   + G   +A +    M R G K ++   
Sbjct: 354 GRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLY 413

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I  +   N  ++AL+LL +++  G E   + Y  L+  L + Q ++EA+ LL K++ 
Sbjct: 414 TTLIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAG 473

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
            G  P   I  ++ D   +AG E +A+  L  +     Q     +  +I+GL   G + +
Sbjct: 474 CGLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISE 533

Query: 556 AQRVHGLMEAQGFAASERLKVALI 579
           A      M   G   + +   ALI
Sbjct: 534 AISHFNKMRELGLDPNVQAYTALI 557



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 113/242 (46%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ ++D   KE  + +A+ +L  M   G+  + +  T L+H +    N +RA +  
Sbjct: 374 NVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLL 433

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +++ G + D  +Y ++I       +     SL+  M   G+  +  IY  ++ +  + 
Sbjct: 434 NQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKA 493

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G    A  + + +    FQP + +   L++   +AG   +A S+F+ M  LG  P+ +  
Sbjct: 494 GKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAY 553

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I  + K   L+KA++L+ E+   G       YT L+D   +   + +A  L  K+ E
Sbjct: 554 TALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTKMIE 613

Query: 496 LG 497
            G
Sbjct: 614 SG 615



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/320 (21%), Positives = 139/320 (43%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+D   K   L+DA  +L +M   G+VP++VT TV+V    K G +  A      + 
Sbjct: 343 YTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLME 402

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G + ++ +Y ++I  +      +  + L++ M   G+E    +Y  L+    +   V 
Sbjct: 403 RGGVKANELLYTTLIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVD 462

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  + + M     +P     T +++A  +AG   +A +    ++  G +P+     ++I
Sbjct: 463 EAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALI 522

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
               K   + +A++   ++ + G +P    YT L+D   ++  +N+A  L+ ++ + G +
Sbjct: 523 DGLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMS 582

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
               +  SL D Y +    + A      +     Q+    +   I+G      +Q+A+ V
Sbjct: 583 LDKVVYTSLIDGYMKQANLQDAFALKTKMIESGLQLDLYCYTCFISGFCNMNMMQEARGV 642

Query: 560 HGLMEAQGFAASERLKVALI 579
              M   G    + +   LI
Sbjct: 643 LSEMIGTGITPDKTVYNCLI 662



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 126/303 (41%), Gaps = 46/303 (15%)

Query: 194 ITDKILSLEKE----EDPSPLLAEWKELLQPSRIDWIN--LLDRLREQNTQLYFKVAELV 247
           + D +LSL  +    +D    LA  ++L  P      N  LL   R +   L  ++ +L+
Sbjct: 136 VVDTLLSLLADHGLLDDAVRALARVRQLRVPPNTRTCNHILLRLARNRQGGLVRRLFDLL 195

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
                F  N+     +ID   KE  L +A  +  +M   G  PD+VT   L+  Y K G+
Sbjct: 196 PVPNVFTFNI-----VIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGD 250

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L+  ++    +R  G   D   YN++I  +   G+ +                       
Sbjct: 251 LEEVEQLVSEMRKSGCAADVVTYNALINCFSKFGRME----------------------- 287

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
             ++++  G+++  G + N++    F          V+A+ + G   +A   F  M   G
Sbjct: 288 --KAYSYFGEMKRQGVVANVVTFSTF----------VDAFCKEGLVQEAMKLFAQMRVRG 335

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P++    S++    K   LD A+ LL E+   G  P   TYTV+VD L +   + EA+
Sbjct: 336 MMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEAD 395

Query: 488 QLL 490
            +L
Sbjct: 396 NVL 398



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 109/255 (42%), Gaps = 7/255 (2%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +  +  + +V  Y  LI    K+  +++A+ +L KM   G+ P+ V  T ++    KAG 
Sbjct: 436 MKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGK 495

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
              A      +   GFQP+   Y ++I     AG     +S  + M   G++ + + Y A
Sbjct: 496 ESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTA 555

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+  F + G +  A  + N M  +         T L++ Y +  +   A +    MI  G
Sbjct: 556 LIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTKMIESG 615

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV---DWLGRLQ--- 481
            + D  C    I+ +   N++ +A  +L E+   G  P    Y  L+     LG ++   
Sbjct: 616 LQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTVYNCLIRKYQKLGNMEEAS 675

Query: 482 -LINEAEQLLGKISE 495
            L NE E +L   +E
Sbjct: 676 SLQNEMESVLSSCTE 690



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 105/253 (41%), Gaps = 21/253 (8%)

Query: 155 IYGLDLSDPKWTEVAEKIHERGEMILPEEPKPITGKCKLITDKILSLEKEEDPSPLLAEW 214
           I+GL   D K  E    +H+     L    +P T     I D +    KE +   LL + 
Sbjct: 452 IWGL-CKDQKVDEAKSLLHKMAGCGL----RPNTVIYTTIMDALFKAGKESEAVALLHKI 506

Query: 215 KEL-LQPSRIDWINLLDRLREQNTQLYFKVAELV-----LSEESFQTNVRDYSKLIDAHA 268
            +   QP+ + +  L+D L +  +     ++E +     + E     NV+ Y+ LID   
Sbjct: 507 LDSGFQPNVVTYCALIDGLCKAGS-----ISEAISHFNKMRELGLDPNVQAYTALIDGFC 561

Query: 269 KENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKK 328
           K   L  A  ++ +M + G+  D V  T L+  Y K  NL  A      +   G Q D  
Sbjct: 562 KIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTKMIESGLQLDLY 621

Query: 329 VYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIM 388
            Y   I  + N    +    ++  MI +GI   + +Y  L+R + + G++  A  + N  
Sbjct: 622 CYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTVYNCLIRKYQKLGNMEEASSLQN-- 679

Query: 389 RIEEFQPTLESCT 401
              E +  L SCT
Sbjct: 680 ---EMESVLSSCT 689



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 90/208 (43%), Gaps = 14/208 (6%)

Query: 218 LQPSRIDWINLLDRL-----REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC 272
           L+P+ + +  ++D L       +   L  K+ +       FQ NV  Y  LID   K   
Sbjct: 476 LRPNTVIYTTIMDALFKAGKESEAVALLHKILD-----SGFQPNVVTYCALIDGLCKAGS 530

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           + +A     KM E G+ P++   T L+  + K G+L++A      +   G   DK VY S
Sbjct: 531 ISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTS 590

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I  Y+     +   +L   MI SG++     Y   +  F     ++ A  + + M    
Sbjct: 591 LIDGYMKQANLQDAFALKTKMIESGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTG 650

Query: 393 FQP--TLESCTLLVEAYGQAGDPDQARS 418
             P  T+ +C  L+  Y + G+ ++A S
Sbjct: 651 ITPDKTVYNC--LIRKYQKLGNMEEASS 676



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 67/303 (22%), Positives = 125/303 (41%), Gaps = 10/303 (3%)

Query: 289 VPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMS 348
           +P +V +  L+ + +  G LD A  A   +R     P+ +  N +++      Q  L   
Sbjct: 133 LPSVVDT--LLSLLADHGLLDDAVRALARVRQLRVPPNTRTCNHILLRLARNRQGGLVRR 190

Query: 349 LVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYG 408
           L D++    +     +   L +     G++  A  +   M+     P + +   L++ YG
Sbjct: 191 LFDLLPVPNVFTFNIVIDFLCKE----GELVEARALFVRMKAMGCSPDVVTYNSLIDGYG 246

Query: 409 QAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPA 468
           + GD ++       M + G   D     ++I  + K   ++KA +   E+++ G      
Sbjct: 247 KCGDLEEVEQLVSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVV 306

Query: 469 TYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFL 528
           T++  VD   +  L+ EA +L  ++   G  P      SL D   +AG    A+  L   
Sbjct: 307 TFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLD-- 364

Query: 529 EAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNR 586
           E   + + P+   +  +++GL   G + +A  V  LME  G  A+E L   LI     N 
Sbjct: 365 EMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNN 424

Query: 587 QRQ 589
             +
Sbjct: 425 NSE 427



 Score = 43.1 bits (100), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 52/244 (21%), Positives = 98/244 (40%), Gaps = 10/244 (4%)

Query: 342 QPKLGMSLVDMM----ITSGIERSE--EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
           +P L  SLVD++    +  G  RS    +   LL   A  G +  A +    +R     P
Sbjct: 108 RPHLAASLVDLLHRAALALGPRRSALPSVVDTLLSLLADHGLLDDAVRALARVRQLRVPP 167

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
              +C  ++    +       R  FD +      P+      +I    K+  L +A  L 
Sbjct: 168 NTRTCNHILLRLARNRQGGLVRRLFDLL----PVPNVFTFNIVIDFLCKEGELVEARALF 223

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
           + ++  G  P   TY  L+D  G+   + E EQL+ ++ + G A       +L + +++ 
Sbjct: 224 VRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQLVSEMRKSGCAADVVTYNALINCFSKF 283

Query: 516 GIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLK 575
           G  +KA    G ++ +        F   ++     G +Q+A ++   M  +G   +E   
Sbjct: 284 GRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTY 343

Query: 576 VALI 579
            +L+
Sbjct: 344 TSLV 347


>gi|357130059|ref|XP_003566674.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 833

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 125/266 (46%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ +I    +E  +  A  +  +M + G+VPD+VT T ++    KA  +D+A+   
Sbjct: 226 NVVTYNTVIHGLFREGEVSKACNLFHEMMQQGVVPDVVTYTSIIDALCKARAMDKAELVL 285

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             + S+GFQP+K  YN MI  Y  +GQ K    +   M + G+  +     + + S  + 
Sbjct: 286 RQMISNGFQPNKVTYNCMIHGYSISGQWKETAGMFREMTSQGLMPNIVTCNSYMSSLCKH 345

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G  + A +  + M  +  +P L + ++L+  Y   G      + F+ M   G   D R  
Sbjct: 346 GKSKEAAEFFDSMAAKGHKPNLVTYSVLLHGYATEGCFVDMLNLFNSMEGNGIVADQRVF 405

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +I AYGK+ ++D+ + +  ++++ G  P   TY +++    R+  + +A     ++  
Sbjct: 406 NIVIDAYGKRGMMDETMLIFTQMQEQGVIPDACTYGIVIAAFSRMGRLADAMDKFNQMIA 465

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKA 521
           +G  P   +  SL   +   G   KA
Sbjct: 466 MGLKPEGIVYHSLIQGFCMHGNLVKA 491



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 115/254 (45%), Gaps = 1/254 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           ++ +  + N+  YS L+  +A E C  D   +   M  NGIV D     +++  Y K G 
Sbjct: 358 MAAKGHKPNLVTYSVLLHGYATEGCFVDMLNLFNSMEGNGIVADQRVFNIVIDAYGKRGM 417

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D     F  ++  G  PD   Y  +I A+   G+    M   + MI  G++    +Y +
Sbjct: 418 MDETMLIFTQMQEQGVIPDACTYGIVIAAFSRMGRLADAMDKFNQMIAMGLKPEGIVYHS 477

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEF-QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           L++ F   G++  A ++ + M      +P +     ++ +  + G   +A   FD++I +
Sbjct: 478 LIQGFCMHGNLVKAKELVSEMMSRGIPRPNIVFFNSIINSLCKEGRVVEAHDIFDFVIHI 537

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G +PD     S+I  YG    ++KA  +L  +   G EP   +Y  L+D   R   I++ 
Sbjct: 538 GERPDVITFNSLIDGYGLVGKIEKAFGVLDAMISAGIEPDVVSYNTLIDGYCRNGRIDDG 597

Query: 487 EQLLGKISELGEAP 500
             L G++   G  P
Sbjct: 598 LILFGEMLSKGVKP 611



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 153/373 (41%), Gaps = 45/373 (12%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ +IDA  K   ++ AE +L++M  NG  P+ VT   ++H YS +G        F
Sbjct: 261 DVVTYTSIIDALCKARAMDKAELVLRQMISNGFQPNKVTYNCMIHGYSISGQWKETAGMF 320

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             + S G  P+    NS + +    G+ K      D M   G + +   Y  LL  +A  
Sbjct: 321 REMTSQGLMPNIVTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPNLVTYSVLLHGYATE 380

Query: 376 G----------DVRGAG-----QITNIM------------------RIEEFQPTLESCT- 401
           G           + G G     ++ NI+                  +++E     ++CT 
Sbjct: 381 GCFVDMLNLFNSMEGNGIVADQRVFNIVIDAYGKRGMMDETMLIFTQMQEQGVIPDACTY 440

Query: 402 -LLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
            +++ A+ + G    A   F+ MI +G KP+     S+I  +     L KA  L+ E+  
Sbjct: 441 GIVIAAFSRMGRLADAMDKFNQMIAMGLKPEGIVYHSLIQGFCMHGNLVKAKELVSEMMS 500

Query: 461 DGF-EPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG-IE 518
            G   P    +  +++ L +   + EA  +   +  +GE P      SL D Y   G IE
Sbjct: 501 RGIPRPNIVFFNSIINSLCKEGRVVEAHDIFDFVIHIGERPDVITFNSLIDGYGLVGKIE 560

Query: 519 KKALQALGFLEAK-KEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLK 575
           K    A G L+A     + PD   +  +I+G    G + D   + G M ++G   +  + 
Sbjct: 561 K----AFGVLDAMISAGIEPDVVSYNTLIDGYCRNGRIDDGLILFGEMLSKGVKPTT-IT 615

Query: 576 VALISSQTFNRQR 588
             +I    FN  R
Sbjct: 616 YGIILHGLFNDGR 628



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 111/245 (45%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  ++ +I++  KE  + +A  I   +   G  PD++T   L+  Y   G +++A    
Sbjct: 507 NIVFFNSIINSLCKEGRVVEAHDIFDFVIHIGERPDVITFNSLIDGYGLVGKIEKAFGVL 566

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           +++ S G +PD   YN++I  Y   G+   G+ L   M++ G++ +   Y  +L      
Sbjct: 567 DAMISAGIEPDVVSYNTLIDGYCRNGRIDDGLILFGEMLSKGVKPTTITYGIILHGLFND 626

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G   GA ++ + M        + +C +++    +    D+A + F  +  +  K +    
Sbjct: 627 GRTVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIAMFKKLGAMNVKFNIAII 686

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            +MI A  K    ++A  L   +   G  P  +TY V++  L +   + EA+ +   + +
Sbjct: 687 NTMIDAMYKVRKREEAKELFDSISATGLVPNASTYGVMIKNLLKEGSVEEADNMFSLMEK 746

Query: 496 LGEAP 500
            G AP
Sbjct: 747 SGCAP 751



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 67/316 (21%), Positives = 122/316 (38%), Gaps = 36/316 (11%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIV-PDIVTSTVLVHMYSKAGNLDRAKEAFESL 318
           Y  LI        L  A+ ++ +M   GI  P+IV    +++   K G +  A + F+ +
Sbjct: 475 YHSLIQGFCMHGNLVKAKELVSEMMSRGIPRPNIVFFNSIINSLCKEGRVVEAHDIFDFV 534

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
              G +PD   +NS+I  Y   G+ +    ++D MI++GIE     Y  L+  + + G +
Sbjct: 535 IHIGERPDVITFNSLIDGYGLVGKIEKAFGVLDAMISAGIEPDVVSYNTLIDGYCRNGRI 594

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
                +   M  +  +PT  +  +++      G    A+     MI  G   D      +
Sbjct: 595 DDGLILFGEMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGII 654

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           +    + N  D+A+ +  +L     +   A    ++D + +++   EA++L   IS  G 
Sbjct: 655 LGGLCRNNCDDEAIAMFKKLGAMNVKFNIAIINTMIDAMYKVRKREEAKELFDSISATGL 714

Query: 499 APPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQR 558
            P                                       +  +I  LL  G +++A  
Sbjct: 715 VP-----------------------------------NASTYGVMIKNLLKEGSVEEADN 739

Query: 559 VHGLMEAQGFAASERL 574
           +  LME  G A S RL
Sbjct: 740 MFSLMEKSGCAPSSRL 755



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 56/320 (17%), Positives = 118/320 (36%), Gaps = 34/320 (10%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH-MYSKAGNLDRAKEA 314
            V  Y+ L+D   +         +  +  + G+  D++ +++L+  +Y    + D     
Sbjct: 118 TVCTYNILMDCCCRTRRPTVGFALFGRFLKTGLKMDVIVASILLKCLYHAKRSDDVVNLL 177

Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
              +   G +PD   YN+++       + +  + L+  M                     
Sbjct: 178 LHRMPELGVEPDTISYNTVVKTLCEDSRSQRALDLLHTM--------------------- 216

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
              V+ +G  +         P + +   ++    + G+  +A + F  M++ G  PD   
Sbjct: 217 ---VKKSGGCS---------PNVVTYNTVIHGLFREGEVSKACNLFHEMMQQGVVPDVVT 264

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
             S+I A  K   +DKA  +L ++  +GF+P   TY  ++          E   +  +++
Sbjct: 265 YTSIIDALCKARAMDKAELVLRQMISNGFQPNKVTYNCMIHGYSISGQWKETAGMFREMT 324

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQ 554
             G  P      S      + G  K+A +    + AK  +     +  +++G    G   
Sbjct: 325 SQGLMPNIVTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPNLVTYSVLLHGYATEGCFV 384

Query: 555 DAQRVHGLMEAQGFAASERL 574
           D   +   ME  G  A +R+
Sbjct: 385 DMLNLFNSMEGNGIVADQRV 404



 Score = 40.8 bits (94), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 38/196 (19%), Positives = 84/196 (42%), Gaps = 4/196 (2%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           ++P+ I +  +L  L      +  K     + E     ++     ++    + NC ++A 
Sbjct: 609 VKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAI 668

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
            + KK+    +  +I     ++    K    + AKE F+S+ + G  P+   Y  MI   
Sbjct: 669 AMFKKLGAMNVKFNIAIINTMIDAMYKVRKREEAKELFDSISATGLVPNASTYGVMIKNL 728

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
           +  G  +   ++  +M  SG   S  +   ++R   + G++  AG    + +++  + +L
Sbjct: 729 LKEGSVEEADNMFSLMEKSGCAPSSRLLNYIIRVLLEKGEIVKAGNY--MFKVDGKRISL 786

Query: 398 ESCT--LLVEAYGQAG 411
           E+ T  LL+  + + G
Sbjct: 787 EASTVSLLMALFSREG 802


>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 999

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 127/257 (49%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+D   K+   ++A+ I + M  +G+ P+  T T L+  + K GN++ A    + + 
Sbjct: 314 YTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMI 373

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G + +   YN+MI     AG+    MSL + M+ +GIE     Y  L+  + +  D+ 
Sbjct: 374 TRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMA 433

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++   M+  +  P+  + ++L+     + D  +A    D MIR G KP+     ++I
Sbjct: 434 KACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLI 493

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            AY +++  + A+ LL  +  +G  P    Y  L+  L R + + EA+ LL  + E G  
Sbjct: 494 KAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIK 553

Query: 500 PPFKIQVSLCDMYARAG 516
           P      +  ++Y+++G
Sbjct: 554 PNAHTYGAFINLYSKSG 570



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 102/419 (24%), Positives = 178/419 (42%), Gaps = 21/419 (5%)

Query: 157 GLDLSDPKWTEVAEKIHERGEM---------ILPEEPKPITGKCKLITDKILSLEKEEDP 207
           GL L+   +  +   I + GEM         +L    +P T    L+ D  L        
Sbjct: 376 GLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKA 435

Query: 208 SPLLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKVAELVLSE---ESFQTNVRDYSKL 263
             LLAE K   L PS   +  L+  L   +     + A  VL +      + NV  Y  L
Sbjct: 436 CELLAEMKARKLTPSPFTYSVLISGLCHSSD---LQKANEVLDQMIRNGVKPNVFMYGTL 492

Query: 264 IDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGF 323
           I A+ +E+  E A  +LK M  NG++PD+     L+    +A  ++ AK     +   G 
Sbjct: 493 IKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGI 552

Query: 324 QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQ 383
           +P+   Y + I  Y  +G+ ++       M++SGI  +  IY  L++     G+   A  
Sbjct: 553 KPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALS 612

Query: 384 ITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYG 443
               M  +   P + + + ++ +  + G   +A   F   ++ G  PD     S+I+ + 
Sbjct: 613 TFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFC 672

Query: 444 KKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN--EAEQLLGKISELGEAPP 501
           K+  ++KA  L  E+  +G  P    Y  L++  G  +  N  EA +L  ++   G +P 
Sbjct: 673 KEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGISPD 732

Query: 502 FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP-DDFERIINGLLAGGFLQDAQRV 559
             I   L D   + G  +KAL    F EA+++ +G    F  +I+     G + +A+ +
Sbjct: 733 GYIYCILIDGCGKEGNLEKALSL--FHEAQQKSVGSLSAFNSLIDSFCKHGKVIEAREL 789



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 113/227 (49%), Gaps = 3/227 (1%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E+    ++R YS +I + +K    ++A  +  K  + G+VPD+     L+  + K G+++
Sbjct: 619 EKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIE 678

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMI--MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +A + ++ +  +G  P+  VYN++I    Y  +G       L D MI+ GI     IY  
Sbjct: 679 KASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGISPDGYIYCI 738

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    + G++  A  + +  + ++   +L +   L++++ + G   +AR  FD M+   
Sbjct: 739 LIDGCGKEGNLEKALSLFHEAQ-QKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKK 797

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
             P+      +I AYGK  ++++A  L L++E     P   TYT L+
Sbjct: 798 LTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLL 844



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 133/327 (40%), Gaps = 4/327 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N   Y+ LID   KE  +E+A RI  +M   G+  ++VT   ++   +KAG + +A   F
Sbjct: 345 NRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLF 404

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G +PD   YN +I  Y+ +        L+  M    +  S   Y  L+      
Sbjct: 405 NEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHS 464

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
            D++ A ++ + M     +P +     L++AY Q    + A      MI  G  PD  C 
Sbjct: 465 SDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCY 524

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +I    +   +++A  LL+++ + G +P   TY   ++   +   I  AE+    +  
Sbjct: 525 NCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLS 584

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFL 553
            G  P   I   L   +   G   +AL     +  K   + PD   +  II+ L   G  
Sbjct: 585 SGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKG--LIPDIRAYSAIIHSLSKNGKT 642

Query: 554 QDAQRVHGLMEAQGFAASERLKVALIS 580
           ++A  V       G      L  +LIS
Sbjct: 643 KEAMGVFLKFLKTGVVPDVFLYNSLIS 669



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 87/175 (49%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  Y+ LIDA+ K   +E+AE++   M    I+P+ +T T L+  Y++ GN  +    F
Sbjct: 801 NIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLF 860

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + + + G   D   Y  M  AY   G+    + L++  +  GI+  ++++ AL+    + 
Sbjct: 861 KDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKE 920

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
             +    ++ + M  EE   + ++C  L+  + ++G+ D+A      M RLG  P
Sbjct: 921 KQISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKVLGVMQRLGWVP 975



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/309 (21%), Positives = 125/309 (40%), Gaps = 9/309 (2%)

Query: 255 TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA 314
           +N+  +   ID       L +A  +       G  P ++    L+    KA  +    + 
Sbjct: 170 SNLTVFDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKV 229

Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE----IYLALLR 370
           + S+      PD   Y ++I A+   G    G      M+ S +E+  +     Y A + 
Sbjct: 230 YGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGK-----MVLSEMEKECKPNLFTYNAFIG 284

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
              Q G V  A ++  +M  +   P   + TLLV+ + +     +A+  F+ M   G  P
Sbjct: 285 GLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNP 344

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           +     ++I  + K+  +++AL +  E+   G +    TY  ++  + +   + +A  L 
Sbjct: 345 NRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLF 404

Query: 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAG 550
            ++   G  P       L D Y ++    KA + L  ++A+K    P  +  +I+GL   
Sbjct: 405 NEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHS 464

Query: 551 GFLQDAQRV 559
             LQ A  V
Sbjct: 465 SDLQKANEV 473


>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
          Length = 649

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 142/320 (44%), Gaps = 4/320 (1%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
            + + S   +VR ++ LI    +   +++A +  K+M    + PD+V+ + L+ ++S+ G
Sbjct: 252 TMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRG 311

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            +D A      ++  G  PD  +Y  +I  +  AG     + + D M+  G       Y 
Sbjct: 312 EMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYN 371

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            LL    +   +  A ++ N M      P L + T L+  Y + G+ + A   FD ++R 
Sbjct: 372 TLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQ 431

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
             +PD     S+I    +K  L KA  L  ++      P   TY++L+D       + +A
Sbjct: 432 RLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCEKGQVEDA 491

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERII 544
              L ++ + G  P  +   S+   Y R+G  KK  Q L   + +++ + PD   F  +I
Sbjct: 492 FGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQ--KMRQDNVFPDLITFNTLI 549

Query: 545 NGLLAGGFLQDAQRVHGLME 564
           +G +    +  A  V  +ME
Sbjct: 550 HGYIKEENMHGAFNVFNIME 569



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 128/284 (45%), Gaps = 2/284 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ L++   K++ L DAE++L +M E G+ PD+ T T L+H Y + GN + A + F
Sbjct: 366 DVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLF 425

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           ++L     +PD   YNS+I      G       L D M    I  +   Y  L+ S  + 
Sbjct: 426 DTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCEK 485

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G V  A    + M  +   P + +   +++ Y ++G+  + +     M +    PD    
Sbjct: 486 GQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITF 545

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I  Y K+  +  A N+   +EK+   P   TY ++++       + +A ++   + +
Sbjct: 546 NTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGFSEQGNMQDAGRVFKGMGD 605

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD 539
            G  P     +SL + +  AG  K+A Q     E       PDD
Sbjct: 606 SGIEPDRYTYMSLINGHVTAGNSKQAFQLHD--EMIHRGFAPDD 647



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 88/379 (23%), Positives = 160/379 (42%), Gaps = 16/379 (4%)

Query: 207 PSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDA 266
           P P  A    L   SR  W +L             +   LVLS +S + N    + ++ +
Sbjct: 119 PVPASASNALLAVLSRAGWPHLAQ-----------EAYRLVLSSDS-EVNAYTLNIMVHS 166

Query: 267 HAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPD 326
           + K    + A+ ++ +M +  + PD+VT  VL+    +AG++D A    +S+ + G +P 
Sbjct: 167 YCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMANRGLKPG 226

Query: 327 KKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITN 386
              YNS++       +      +   M    +      +  L+  F + G+V+ A +   
Sbjct: 227 IVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYK 286

Query: 387 IMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKN 446
            M+     P + S + L+  + + G+ D A +    M  LG  PD      +I  + +  
Sbjct: 287 EMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAG 346

Query: 447 LLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQV 506
            + +AL +  E+   G  P   TY  L++ L +   + +AE+LL ++ E G  P      
Sbjct: 347 SMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFT 406

Query: 507 SLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLME 564
           +L   Y R G  + ALQ    L   ++++ PD   +  +I+G+   G L  A  +   M 
Sbjct: 407 TLIHGYCRQGNFENALQLFDTL--LRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMH 464

Query: 565 AQGFAASERLKVALISSQT 583
           A+    +      LI S  
Sbjct: 465 AREILPNHITYSILIDSHC 483



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 86/174 (49%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS LID+H ++  +EDA   L +M + G +P+I T   ++  Y ++GN+ + ++  + +R
Sbjct: 475 YSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMR 534

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
                PD   +N++I  Y+         ++ ++M    +      Y  ++  F++ G+++
Sbjct: 535 QDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGFSEQGNMQ 594

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
            AG++   M     +P   +   L+  +  AG+  QA    D MI  G  PDD+
Sbjct: 595 DAGRVFKGMGDSGIEPDRYTYMSLINGHVTAGNSKQAFQLHDEMIHRGFAPDDK 648



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 61/283 (21%), Positives = 121/283 (42%), Gaps = 15/283 (5%)

Query: 187 ITGKCK----LITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFK 242
           + G CK    L  +K+L+  +E   +P L  +  L+              R+ N +   +
Sbjct: 374 LNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIH----------GYCRQGNFENALQ 423

Query: 243 VAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMY 302
           + + +L +   + +V  Y+ LID   ++  L  A  +   M+   I+P+ +T ++L+  +
Sbjct: 424 LFDTLLRQR-LRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDSH 482

Query: 303 SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE 362
            + G ++ A    + +   G  P+ + YNS+I  Y  +G  K G   +  M    +    
Sbjct: 483 CEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDL 542

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
             +  L+  + +  ++ GA  + NIM  E  +P   +  +++  + + G+   A   F  
Sbjct: 543 ITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGFSEQGNMQDAGRVFKG 602

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
           M   G +PD     S+I  +       +A  L  E+   GF P
Sbjct: 603 MGDSGIEPDRYTYMSLINGHVTAGNSKQAFQLHDEMIHRGFAP 645



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/283 (20%), Positives = 126/283 (44%), Gaps = 4/283 (1%)

Query: 220 PSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERI 279
           P  + +  LL+ L +Q+  L  +     + E     ++  ++ LI  + ++   E+A ++
Sbjct: 365 PDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQL 424

Query: 280 LKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339
              +    + PD+VT   L+    + G+L +A E ++ + +    P+   Y+ +I ++  
Sbjct: 425 FDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCE 484

Query: 340 AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLES 399
            GQ +     +D M+  G   +   Y ++++ + + G+V+   Q    MR +   P L +
Sbjct: 485 KGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLIT 544

Query: 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELE 459
              L+  Y +  +   A + F+ M +   +PD      +I  + ++  +  A  +   + 
Sbjct: 545 FNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGFSEQGNMQDAGRVFKGMG 604

Query: 460 KDGFEPGPATYTVLVDWLGRLQLIN--EAEQLLGKISELGEAP 500
             G EP   TY  L++  G +   N  +A QL  ++   G AP
Sbjct: 605 DSGIEPDRYTYMSLIN--GHVTAGNSKQAFQLHDEMIHRGFAP 645



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 110/273 (40%), Gaps = 4/273 (1%)

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           +L+  Y+++     A EAF  L  H         N+++     AG P L      ++++S
Sbjct: 92  LLIRTYTQSRKPREAFEAFRLLLDHRVPVPASASNALLAVLSRAGWPHLAQEAYRLVLSS 151

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
             E +      ++ S+ +  +  GA  + + M      P + +  +L++A  +AGD D A
Sbjct: 152 DSEVNAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAA 211

Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476
            +  D M   G KP      S++    K    DKA  +   +++    P   ++ +L+  
Sbjct: 212 IALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGG 271

Query: 477 LGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG 536
             R+  + EA +   ++      P       L  +++R G    A   L   E K   + 
Sbjct: 272 FCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYL--REMKGLGLV 329

Query: 537 PDD--FERIINGLLAGGFLQDAQRVHGLMEAQG 567
           PD   +  +I G    G + +A RV   M   G
Sbjct: 330 PDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFG 362


>gi|449446624|ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 127/259 (49%), Gaps = 3/259 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L++   K+N +++A  + ++  E   VPD+ +  +L+    + G +D+A E F+++ 
Sbjct: 182 YNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMG 241

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV--DMMITSGIERSEEIYLALLRSFAQCGD 377
           + G  PD   YN++I  +    +   G  L+  DM+I  G+      Y +++  + + GD
Sbjct: 242 NFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLI-KGVSPDVITYTSIISGYCKLGD 300

Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
           ++ A ++ + M     +P   +  +L++ +G+ G+   A   ++ M+ LG  PD     S
Sbjct: 301 MKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTS 360

Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           +I  Y ++  +++ L L  E++     P   TY VL++ L +   I EA   L  +    
Sbjct: 361 LIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSE 420

Query: 498 EAPPFKIQVSLCDMYARAG 516
             P   I   + D + +AG
Sbjct: 421 VVPKPFIYNPVIDGFCKAG 439



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 82/351 (23%), Positives = 158/351 (45%), Gaps = 17/351 (4%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLS-----EESFQTNVRDYSKLIDAHAKENC 272
           ++ S   + NLL+ L +QN      V E VL      E  F  +V  ++ LI    +   
Sbjct: 175 IKVSPFVYNNLLNMLVKQNL-----VDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGE 229

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF-ESLRSHGFQPDKKVYN 331
           ++ A    + M   G  PDIV+   L++ + +   + +  +   E +   G  PD   Y 
Sbjct: 230 IDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYT 289

Query: 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391
           S+I  Y   G  K    L D M++SGI+ ++  +  L+  F + G++R A  +   M + 
Sbjct: 290 SIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLL 349

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
              P + + T L++ Y + G+ +Q    ++ M      P+    A +I A  K+N + +A
Sbjct: 350 GCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREA 409

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
            N L  L+     P P  Y  ++D   +   ++EA  ++ ++ E  +  P KI  ++  +
Sbjct: 410 RNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQE-KKCRPDKITFTI--L 466

Query: 512 YARAGIEKKALQALG-FLEAKKEQMGPDD--FERIINGLLAGGFLQDAQRV 559
                ++ + ++A+  F +  +    PD+     +I+ LL  G   +A ++
Sbjct: 467 IIGNCMKGRMVEAISTFYKMIEINCVPDEITINSLISCLLKAGMPNEASQI 517



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 132/328 (40%), Gaps = 25/328 (7%)

Query: 233 REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDI 292
           R  +  L  K  E   +  S       Y  L+    K    + A+ +   M  +GI+PD 
Sbjct: 85  RFSDPLLGLKFFEFSRTHLSINHTFNTYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDS 144

Query: 293 VTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDM 352
               +LV  Y++ G LD AK     +  +G +    VYN+++   V         +LVD 
Sbjct: 145 SILELLVSSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQ-------NLVDE 197

Query: 353 MITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF---------QPTLESCTLL 403
            +    E  E  ++  + SF     +RG  +I  I +  EF          P + S   L
Sbjct: 198 AVLLFREHLEPYFVPDVYSFNIL--IRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTL 255

Query: 404 VEAYGQAGDPDQARSNF--DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD 461
           +  + +  +  +       D +I+ G  PD     S+I+ Y K   +  A  L  E+   
Sbjct: 256 INGFCRVNEISKGHDLLKEDMLIK-GVSPDVITYTSIISGYCKLGDMKAASELFDEMVSS 314

Query: 462 GFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKA 521
           G +P   T+ VL+D  G++  +  A  +  K+  LG  P      SL D Y R G   + 
Sbjct: 315 GIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQG 374

Query: 522 LQALGFLEAKKEQMGPD--DFERIINGL 547
           L+   + E K   + P+   +  +IN L
Sbjct: 375 LKL--WEEMKVRNLSPNVYTYAVLINAL 400



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 95/233 (40%), Gaps = 14/233 (6%)

Query: 343 PKLGMSLVDMMITS-GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCT 401
           P LG+   +   T   I  +   Y  L+R+  + G    A  + + MR +   P      
Sbjct: 89  PLLGLKFFEFSRTHLSINHTFNTYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILE 148

Query: 402 LLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD 461
           LLV +Y + G  D A++  + +   G K       +++    K+NL+D+A+ L  E  + 
Sbjct: 149 LLVSSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEP 208

Query: 462 GFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKA 521
            F P   ++ +L+  L R+  I++A +    +   G  P      +L + + R     K 
Sbjct: 209 YFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKG 268

Query: 522 LQALGFLEAKKEQM-----GPD--DFERIINGLLAGGFLQDAQRVHGLMEAQG 567
              L      KE M      PD   +  II+G    G ++ A  +   M + G
Sbjct: 269 HDLL------KEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSG 315


>gi|356530056|ref|XP_003533600.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 694

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 152/351 (43%), Gaps = 2/351 (0%)

Query: 218 LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
            Q +++ +  LL+ L +   T+   K+  ++  + S + +V  Y+ +ID   K+  + +A
Sbjct: 233 FQMNQVSYGTLLNGLCKIGETRCAIKLLRMI-EDRSTRPDVVMYNTIIDGLCKDKLVNEA 291

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
                +MN  GI PD++T + L+  +  AG L  A      +      PD   Y  +I A
Sbjct: 292 YDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDA 351

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
               G+ K   +L+ +M   G++ +   Y  L+  +   G+V  A QI + M   E  P+
Sbjct: 352 LCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVNPS 411

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           + S  +++    +    D+A +    M+     P+     S+I    K   +  AL+L+ 
Sbjct: 412 VCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMK 471

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
           EL   G      TYT L+D L + Q +++A  L  K+ E G  P      +L D   +  
Sbjct: 472 ELHHRGQPADVITYTSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGA 531

Query: 517 IEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
             K A +    +  K   +    +  +I GL   G L +A  +   ME  G
Sbjct: 532 RLKNAQKLFQHILVKGCCIDVYTYNVMIGGLCKEGMLDEALAMKSKMEDNG 582



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 137/311 (44%), Gaps = 4/311 (1%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           + FQ N   Y  L++   K      A ++L+ + +    PD+V    ++    K   ++ 
Sbjct: 231 QGFQMNQVSYGTLLNGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNE 290

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A + +  + S G  PD   Y+++I  +  AGQ     SL++ M    I      Y  L+ 
Sbjct: 291 AYDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILID 350

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
           +  + G ++ A  +  +M  E  +P + + + L++ Y   G+   A+  F  M++    P
Sbjct: 351 ALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVNP 410

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
                  MI    K   +D+A+NLL E+      P   TY  L+D L +   I  A  L+
Sbjct: 411 SVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLM 470

Query: 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLL 548
            ++   G+        SL D   +     KA+    F++ K+  + P+   +  +I+GL 
Sbjct: 471 KELHHRGQPADVITYTSLLDGLCKNQNLDKAIAL--FMKMKERGIQPNKYTYTALIDGLC 528

Query: 549 AGGFLQDAQRV 559
            G  L++AQ++
Sbjct: 529 KGARLKNAQKL 539



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/306 (21%), Positives = 135/306 (44%), Gaps = 4/306 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           ++ ++ K++ +  K      A  + K+M   GI PD+VT ++L++ +   G +  +    
Sbjct: 131 SIIEFGKILGSLVKMKHFPTAISLSKQMEVKGIEPDLVTLSILINCFCHLGQMAFSFSVL 190

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G+QP+  +  +++      G+ K  +   D ++  G + ++  Y  LL    + 
Sbjct: 191 GKILKLGYQPNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQGFQMNQVSYGTLLNGLCKI 250

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G+ R A ++  ++     +P +     +++   +    ++A   +  M   G  PD    
Sbjct: 251 GETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITY 310

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
           +++I  +     L  A +LL E+      P   TYT+L+D L +   + EA+ LLG +++
Sbjct: 311 STLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLKEAKNLLGVMTK 370

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFL 553
            G  P      +L D Y   G    A Q   F    + ++ P    +  +INGL  G  +
Sbjct: 371 EGVKPNVVTYSTLMDGYCLVGEVHNAKQI--FHAMVQTEVNPSVCSYNIMINGLCKGKSV 428

Query: 554 QDAQRV 559
            +A  +
Sbjct: 429 DEAMNL 434



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 52/244 (21%), Positives = 108/244 (44%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           V+++E  + NV  YS L+D +     + +A++I   M +  + P + +  ++++   K  
Sbjct: 367 VMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGK 426

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           ++D A      +      P+   YNS+I     +G+    + L+  +   G       Y 
Sbjct: 427 SVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKELHHRGQPADVITYT 486

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           +LL    +  ++  A  +   M+    QP   + T L++   +      A+  F +++  
Sbjct: 487 SLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGARLKNAQKLFQHILVK 546

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G   D      MI    K+ +LD+AL +  ++E +G  P   T+ +++  L      ++A
Sbjct: 547 GCCIDVYTYNVMIGGLCKEGMLDEALAMKSKMEDNGCIPDAVTFEIIIRSLFEKDENDKA 606

Query: 487 EQLL 490
           E+LL
Sbjct: 607 EKLL 610



 Score = 46.2 bits (108), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 57/267 (21%), Positives = 105/267 (39%), Gaps = 23/267 (8%)

Query: 287 GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLG 346
           GIVP++VT ++L++     G +  +      +   G+QP     NS+ +  +  G+ +  
Sbjct: 6   GIVPNLVTLSILINCLRHLGQMAFSFSVLGKILKLGYQP-----NSITLTTLMKGETRCA 60

Query: 347 MSLVDMMITSGIERSEEIYLALLRSFAQC--GDVRGAGQITNIMRIEEFQPTLESCTLLV 404
           + L  M+     +RS    + L  S +             T         P++       
Sbjct: 61  IKLPRMIE----DRSTRPLMWLSSSLSHSIPNFPPFLPNPTFPFYFHSQPPSIHDVV--- 113

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
                      A S F+ M+ + + P       ++ +  K      A++L  ++E  G E
Sbjct: 114 ---------HDAVSQFNGMLLMRNTPSIIEFGKILGSLVKMKHFPTAISLSKQMEVKGIE 164

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQA 524
           P   T ++L++    L  +  +  +LGKI +LG  P   I  +L       G  KK+L  
Sbjct: 165 PDLVTLSILINCFCHLGQMAFSFSVLGKILKLGYQPNTIILTTLMKGLCLKGEVKKSLHF 224

Query: 525 LGFLEAKKEQMGPDDFERIINGLLAGG 551
              + A+  QM    +  ++NGL   G
Sbjct: 225 HDKVVAQGFQMNQVSYGTLLNGLCKIG 251



 Score = 42.0 bits (97), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 47/224 (20%), Positives = 89/224 (39%), Gaps = 4/224 (1%)

Query: 346 GMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVE 405
            +SL   M   GIE        L+  F   G +  +  +   +    +QP     T L++
Sbjct: 151 AISLSKQMEVKGIEPDLVTLSILINCFCHLGQMAFSFSVLGKILKLGYQPNTIILTTLMK 210

Query: 406 AYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
                G+  ++    D ++  G + +     +++    K      A+ LL  +E     P
Sbjct: 211 GLCLKGEVKKSLHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAIKLLRMIEDRSTRP 270

Query: 466 GPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
               Y  ++D L + +L+NEA     +++  G  P      +L   +  AG    A   L
Sbjct: 271 DVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLL 330

Query: 526 GFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQG 567
              E   + + PD   +  +I+ L   G L++A+ + G+M  +G
Sbjct: 331 N--EMTLKNINPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEG 372


>gi|224141281|ref|XP_002324003.1| predicted protein [Populus trichocarpa]
 gi|222867005|gb|EEF04136.1| predicted protein [Populus trichocarpa]
          Length = 626

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 120/274 (43%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E  +  +V   + L++   K N +     +  +M   G++P+  T  +L H++ K G++D
Sbjct: 210 EVGYVPSVIACNYLLNGLLKSNHIHLCWHVYGEMGRVGVIPNSYTFNILTHLFCKDGDID 269

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
           +  +  E +   GF+PD   YN++I  Y   G+      L  +M    +      Y AL+
Sbjct: 270 KMNDFLEKMEEEGFEPDIVTYNTLINGYCGRGRLSDAFYLYRIMYRRCVLPDLVSYTALM 329

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               + G VR A Q+ + M      P + S   L+  Y + G   +++S    MI  G  
Sbjct: 330 NGLCKEGRVREAHQLLHRMVHRGLNPDVVSYNTLICGYCKEGKMLESKSLLYEMIGNGIF 389

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD      +I  Y K+  L  ALNL++ELEK G    P  Y  LV  L        A+ L
Sbjct: 390 PDSFTCRVLIQGYRKEGWLISALNLVVELEKFGVSISPDIYDYLVASLCEEDRPFAAKTL 449

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
           L ++S+ G  P  +I   L +   +      AL 
Sbjct: 450 LERMSQRGYIPHVEIYNKLIESLCKGDCVADALS 483



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 134/290 (46%), Gaps = 5/290 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + EE F+ ++  Y+ LI+ +     L DA  + + M    ++PD+V+ T L++   K G 
Sbjct: 278 MEEEGFEPDIVTYNTLINGYCGRGRLSDAFYLYRIMYRRCVLPDLVSYTALMNGLCKEGR 337

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A +    +   G  PD   YN++I  Y   G+     SL+  MI +GI         
Sbjct: 338 VREAHQLLHRMVHRGLNPDVVSYNTLICGYCKEGKMLESKSLLYEMIGNGIFPDSFTCRV 397

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTL--ESCTLLVEAYGQAGDPDQARSNFDYMIR 425
           L++ + + G +  A  +  ++ +E+F  ++  +    LV +  +   P  A++  + M +
Sbjct: 398 LIQGYRKEGWLISALNL--VVELEKFGVSISPDIYDYLVASLCEEDRPFAAKTLLERMSQ 455

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
            G+ P       +I +  K + +  AL+L  E+      P   TY  L+  L R+    E
Sbjct: 456 RGYIPHVEIYNKLIESLCKGDCVADALSLKAEIVVGNINPNLLTYKALIRCLCRMGRSIE 515

Query: 486 AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQM 535
           AE+L+ ++   G  P  +I  ++   Y R     KA ++L  L AK+ Q+
Sbjct: 516 AEKLMEEMLHFGLQPDPEICRAMIHGYCREKDAGKA-ESLLVLFAKEFQI 564



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 111/267 (41%), Gaps = 12/267 (4%)

Query: 214 WKELLQPSRIDWINLLD------RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAH 267
           ++  + P  + +  L++      R+RE +  L+  V            +V  Y+ LI  +
Sbjct: 314 YRRCVLPDLVSYTALMNGLCKEGRVREAHQLLHRMV------HRGLNPDVVSYNTLICGY 367

Query: 268 AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK 327
            KE  + +++ +L +M  NGI PD  T  VL+  Y K G L  A      L   G     
Sbjct: 368 CKEGKMLESKSLLYEMIGNGIFPDSFTCRVLIQGYRKEGWLISALNLVVELEKFGVSISP 427

Query: 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNI 387
            +Y+ ++ +     +P    +L++ M   G     EIY  L+ S  +   V  A  +   
Sbjct: 428 DIYDYLVASLCEEDRPFAAKTLLERMSQRGYIPHVEIYNKLIESLCKGDCVADALSLKAE 487

Query: 388 MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447
           + +    P L +   L+    + G   +A    + M+  G +PD     +MI  Y ++  
Sbjct: 488 IVVGNINPNLLTYKALIRCLCRMGRSIEAEKLMEEMLHFGLQPDPEICRAMIHGYCREKD 547

Query: 448 LDKALNLLLELEKDGFEPGPATYTVLV 474
             KA +LL+   K+       +Y+ LV
Sbjct: 548 AGKAESLLVLFAKEFQIFDSESYSTLV 574



 Score = 46.2 bits (108), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 54/258 (20%), Positives = 98/258 (37%), Gaps = 2/258 (0%)

Query: 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV 350
           D +   +L+  Y KAG +      F  +   G+ P     N ++   + +    L   + 
Sbjct: 181 DPIIFDLLLKAYVKAGMIKEGFRTFMQILEVGYVPSVIACNYLLNGLLKSNHIHLCWHVY 240

Query: 351 DMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410
             M   G+  +   +  L   F + GD+         M  E F+P + +   L+  Y   
Sbjct: 241 GEMGRVGVIPNSYTFNILTHLFCKDGDIDKMNDFLEKMEEEGFEPDIVTYNTLINGYCGR 300

Query: 411 GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATY 470
           G    A   +  M R    PD     +++    K+  + +A  LL  +   G  P   +Y
Sbjct: 301 GRLSDAFYLYRIMYRRCVLPDLVSYTALMNGLCKEGRVREAHQLLHRMVHRGLNPDVVSY 360

Query: 471 TVLVDWLGRLQLINEAEQLLGKISELGEAP-PFKIQVSLCDMYARAGIEKKALQALGFLE 529
             L+    +   + E++ LL ++   G  P  F  +V L   Y + G    AL  +  LE
Sbjct: 361 NTLICGYCKEGKMLESKSLLYEMIGNGIFPDSFTCRV-LIQGYRKEGWLISALNLVVELE 419

Query: 530 AKKEQMGPDDFERIINGL 547
                + PD ++ ++  L
Sbjct: 420 KFGVSISPDIYDYLVASL 437


>gi|449488099|ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 127/259 (49%), Gaps = 3/259 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L++   K+N +++A  + ++  E   VPD+ +  +L+    + G +D+A E F+++ 
Sbjct: 182 YNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMG 241

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV--DMMITSGIERSEEIYLALLRSFAQCGD 377
           + G  PD   YN++I  +    +   G  L+  DM+I  G+      Y +++  + + GD
Sbjct: 242 NFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLI-KGVSPDVITYTSIISGYCKLGD 300

Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
           ++ A ++ + M     +P   +  +L++ +G+ G+   A   ++ M+ LG  PD     S
Sbjct: 301 MKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTS 360

Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           +I  Y ++  +++ L L  E++     P   TY VL++ L +   I EA   L  +    
Sbjct: 361 LIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSE 420

Query: 498 EAPPFKIQVSLCDMYARAG 516
             P   I   + D + +AG
Sbjct: 421 VVPKPFIYNPVIDGFCKAG 439



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 82/351 (23%), Positives = 158/351 (45%), Gaps = 17/351 (4%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLS-----EESFQTNVRDYSKLIDAHAKENC 272
           ++ S   + NLL+ L +QN      V E VL      E  F  +V  ++ LI    +   
Sbjct: 175 IKVSPFVYNNLLNMLVKQNL-----VDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGE 229

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF-ESLRSHGFQPDKKVYN 331
           ++ A    + M   G  PDIV+   L++ + +   + +  +   E +   G  PD   Y 
Sbjct: 230 IDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYT 289

Query: 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391
           S+I  Y   G  K    L D M++SGI+ ++  +  L+  F + G++R A  +   M + 
Sbjct: 290 SIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLL 349

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
              P + + T L++ Y + G+ +Q    ++ M      P+    A +I A  K+N + +A
Sbjct: 350 GCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREA 409

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
            N L  L+     P P  Y  ++D   +   ++EA  ++ ++ E  +  P KI  ++  +
Sbjct: 410 RNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQE-KKCRPDKITFTI--L 466

Query: 512 YARAGIEKKALQALG-FLEAKKEQMGPDD--FERIINGLLAGGFLQDAQRV 559
                ++ + ++A+  F +  +    PD+     +I+ LL  G   +A ++
Sbjct: 467 IIGNCMKGRMVEAISTFYKMIEINCVPDEITINSLISCLLKAGMPNEASQI 517



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 132/328 (40%), Gaps = 25/328 (7%)

Query: 233 REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDI 292
           R  +  L  K  E   +  S       Y  L+    K    + A+ +   M  +GI+PD 
Sbjct: 85  RFSDPLLGLKFFEFSRTHLSINHTFNTYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDS 144

Query: 293 VTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDM 352
               +LV  Y++ G LD AK     +  +G +    VYN+++   V         +LVD 
Sbjct: 145 SILELLVSSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQ-------NLVDE 197

Query: 353 MITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF---------QPTLESCTLL 403
            +    E  E  ++  + SF     +RG  +I  I +  EF          P + S   L
Sbjct: 198 AVLLFREHLEPYFVPDVYSFNIL--IRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTL 255

Query: 404 VEAYGQAGDPDQARSNF--DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD 461
           +  + +  +  +       D +I+ G  PD     S+I+ Y K   +  A  L  E+   
Sbjct: 256 INGFCRVNEISKGHDLLKEDMLIK-GVSPDVITYTSIISGYCKLGDMKAASELFDEMVSS 314

Query: 462 GFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKA 521
           G +P   T+ VL+D  G++  +  A  +  K+  LG  P      SL D Y R G   + 
Sbjct: 315 GIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQG 374

Query: 522 LQALGFLEAKKEQMGPD--DFERIINGL 547
           L+   + E K   + P+   +  +IN L
Sbjct: 375 LKL--WEEMKVRNLSPNVYTYAVLINAL 400



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 95/233 (40%), Gaps = 14/233 (6%)

Query: 343 PKLGMSLVDMMITS-GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCT 401
           P LG+   +   T   I  +   Y  L+R+  + G    A  + + MR +   P      
Sbjct: 89  PLLGLKFFEFSRTHLSINHTFNTYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILE 148

Query: 402 LLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD 461
           LLV +Y + G  D A++  + +   G K       +++    K+NL+D+A+ L  E  + 
Sbjct: 149 LLVSSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEP 208

Query: 462 GFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKA 521
            F P   ++ +L+  L R+  I++A +    +   G  P      +L + + R     K 
Sbjct: 209 YFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKG 268

Query: 522 LQALGFLEAKKEQM-----GPD--DFERIINGLLAGGFLQDAQRVHGLMEAQG 567
              L      KE M      PD   +  II+G    G ++ A  +   M + G
Sbjct: 269 HDLL------KEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSG 315


>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
 gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
          Length = 1320

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 143/327 (43%), Gaps = 1/327 (0%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F  NV  Y+ +I    K   +  A ++  +M    IVPDIVT T ++H   K+G +  A+
Sbjct: 344 FPDNVV-YTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAR 402

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           E F  +   G +PD+  Y ++I  Y  AG+ K   S+ + M+  G+  +   Y AL    
Sbjct: 403 EMFNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGL 462

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + G++  A ++ + M  +  QP + +   +V    + G+ +Q     + M   G  PD 
Sbjct: 463 CKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDT 522

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               +++ AY K   + KA  LL  +     +P   T+ VL++      ++ + E+L+  
Sbjct: 523 ITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEW 582

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
           + E G  P      SL   Y      +   +    +  +      + +  +I G      
Sbjct: 583 MLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHCKARN 642

Query: 553 LQDAQRVHGLMEAQGFAASERLKVALI 579
           +++A  +H  M  +G++ +     ALI
Sbjct: 643 MKEAWFLHKEMVEKGYSVTAATYDALI 669



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 148/330 (44%), Gaps = 35/330 (10%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           + +A  +L +M + G  PD+V+  V+V  Y + G LD+  +  + L+  G +PD+ +YN+
Sbjct: 258 VREAHNLLVQMTDRGNFPDVVSYGVVVSGYCRIGELDKVLKLVDELKGKGLKPDEYIYNN 317

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I+     G+      L+  M   G+     +Y  ++  F + G+V  A ++ + MR ++
Sbjct: 318 IILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVSAACKLFDEMRRKK 377

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGK-------- 444
             P + + T ++    ++G   +AR  F+ M+  G +PD+    ++I  Y K        
Sbjct: 378 IVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAF 437

Query: 445 --------KNL-------------------LDKALNLLLELEKDGFEPGPATYTVLVDWL 477
                   K L                   +D A  LL E+ + G +P   TY  +V+ L
Sbjct: 438 SVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGL 497

Query: 478 GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP 537
            ++  I +  +L+ ++   G  P      +L D Y + G   KA + L  +  K+ Q   
Sbjct: 498 CKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTL 557

Query: 538 DDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
             F  ++NG    G L+D +R+   M  +G
Sbjct: 558 VTFNVLMNGFCMSGMLEDGERLIEWMLEKG 587



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/228 (21%), Positives = 102/228 (44%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +S +  Q NV  Y+ +++   K   +E   +++++M+  G  PD +T T L+  Y K G 
Sbjct: 478 MSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGE 537

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           + +A E    + +   QP    +N ++  +  +G  + G  L++ M+  GI  +   + +
Sbjct: 538 MAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNS 597

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L++ +    ++R   +I   M      P   +  +L++ + +A +  +A      M+  G
Sbjct: 598 LMKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKG 657

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
           +        ++I  + K+    +A  L  E+ K G       Y + VD
Sbjct: 658 YSVTAATYDALIRGFYKRKKFVEARKLFEEMRKHGLVAEKDIYDIFVD 705



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/250 (20%), Positives = 106/250 (42%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + ++    NV  Y+ L D   K   ++ A  +L +M+  G+ P++ T   +V+   K GN
Sbjct: 443 MVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGN 502

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +++  +  E +   GF PD   Y +++ AY   G+      L+ +M+   ++ +   +  
Sbjct: 503 IEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNV 562

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+  F   G +    ++   M  +   P   +   L++ Y    +       +  M   G
Sbjct: 563 LMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDRG 622

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD      +I  + K   + +A  L  E+ + G+    ATY  L+    + +   EA 
Sbjct: 623 VMPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAATYDALIRGFYKRKKFVEAR 682

Query: 488 QLLGKISELG 497
           +L  ++ + G
Sbjct: 683 KLFEEMRKHG 692



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 4/183 (2%)

Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
           SC +++    Q G   +A +    M   G+ PD      +++ Y +   LDK L L+ EL
Sbjct: 244 SCNIVLHCLCQLGKVREAHNLLVQMTDRGNFPDVVSYGVVVSGYCRIGELDKVLKLVDEL 303

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
           +  G +P    Y  ++  L +   + EAEQLL  + + G  P   +  ++   + + G  
Sbjct: 304 KGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNV 363

Query: 519 KKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKV 576
             A +   F E +++++ PD   +  +I+G+   G + +A+ +   M  +G    E    
Sbjct: 364 SAACKL--FDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYT 421

Query: 577 ALI 579
           ALI
Sbjct: 422 ALI 424



 Score = 42.7 bits (99), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 3/113 (2%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI  H K   +++A  + K+M E G      T   L+  + K      A++ FE +R
Sbjct: 630 YNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAATYDALIRGFYKRKKFVEARKLFEEMR 689

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
            HG   +K +Y+  +      G  ++ + L D  +T   E S  I++  +  F
Sbjct: 690 KHGLVAEKDIYDIFVDVNYEEGNWEITLELCDEFMT---ELSGTIFVVYICFF 739


>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
 gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
          Length = 448

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 109/234 (46%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ L+DA  K   + DA  IL+ M E G  P++VT   L++ + K GN+D A   F
Sbjct: 101 SVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLF 160

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +  +   PD   YN +I  Y    +P+ G  L+  M+  G E +   Y  L+ S  + 
Sbjct: 161 NQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKS 220

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G    A  +  +M   + +P+  +  L+++ + + G  D A   F  M   G  PD    
Sbjct: 221 GKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTY 280

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
             MI+   + N +D A  LL  + + G  P   TY  +V  L +   ++EA ++
Sbjct: 281 NIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEV 334



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/296 (22%), Positives = 133/296 (44%), Gaps = 9/296 (3%)

Query: 211 LAEWKEL---LQPSRIDWINLLDRLREQNTQLYFKVAELVLS---EESFQTNVRDYSKLI 264
           L  ++++     PS I +  L+D L +         A L+L    E     NV  Y+ LI
Sbjct: 88  LVHYRDMQRHCAPSVITYTILVDALCKSAR---ISDASLILEDMIEAGCAPNVVTYNTLI 144

Query: 265 DAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQ 324
           +   K   +++A  +  +M EN   PD+ T  +L+  Y K        +  + +  +G +
Sbjct: 145 NGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCE 204

Query: 325 PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQI 384
           P+   YN+++ + V +G+     +L  MM+    + S   +  ++  F + G +  A ++
Sbjct: 205 PNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYEL 264

Query: 385 TNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGK 444
             +M      P + +  +++    +A   D AR   + M   G  PD     S+++   K
Sbjct: 265 FQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCK 324

Query: 445 KNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
            + +D+A  +   L   G+     T + L+D L + + +++AE+LL ++   G AP
Sbjct: 325 ASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAP 380



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 103/242 (42%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N   Y+ L+D+  K     DA  + + M      P   T  +++ M+ K G LD A E F
Sbjct: 206 NFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELF 265

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + +   G  PD   YN MI     A +      L++ M  +G       Y +++    + 
Sbjct: 266 QLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKA 325

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
             V  A ++  ++R   +   + +C+ L++   ++   D A      M R G  PD    
Sbjct: 326 SQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAY 385

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +I  + K + LDK+L    E+   G  P   TY++++D L +   + +   LL  + E
Sbjct: 386 TILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLE 445

Query: 496 LG 497
            G
Sbjct: 446 RG 447



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 57/112 (50%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           VL    +  +V   S LID   K   L+DAE++L++M  NG  PD+V  T+L+H + KA 
Sbjct: 337 VLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKAD 396

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
            LD++   F  +   G  P    Y+ +I     + + + G  L+  M+  G+
Sbjct: 397 QLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGV 448



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 112/261 (42%), Gaps = 4/261 (1%)

Query: 310 RAKEAFESLRSH--GF-QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           +A+EA++  ++H  G   PD   Y+++I  +  A   +    L+D M   GI     +Y 
Sbjct: 13  KAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYN 72

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            +++     G V  A      M+     P++ + T+LV+A  ++     A    + MI  
Sbjct: 73  TIIKGLCDNGRVDSALVHYRDMQ-RHCAPSVITYTILVDALCKSARISDASLILEDMIEA 131

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G  P+     ++I  + K   +D+A+ L  ++ ++   P   TY +L+D   + +   + 
Sbjct: 132 GCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDG 191

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
            +LL ++ + G  P F    +L D   ++G    A      +  +  +     F  +I+ 
Sbjct: 192 AKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDM 251

Query: 547 LLAGGFLQDAQRVHGLMEAQG 567
               G L  A  +  LM  +G
Sbjct: 252 FCKVGQLDLAYELFQLMTDRG 272



 Score = 42.4 bits (98), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 38/193 (19%), Positives = 71/193 (36%), Gaps = 43/193 (22%)

Query: 239 LYFKVAELVLSEESFQT--------NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVP 290
           ++ KV +L L+ E FQ         ++  Y+ +I    + N ++DA ++L++M E G  P
Sbjct: 251 MFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPP 310

Query: 291 DIVT-----------------------------------STVLVHMYSKAGNLDRAKEAF 315
           D+VT                                    + L+    K+  LD A++  
Sbjct: 311 DVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLL 370

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +  +G  PD   Y  +I  +  A Q    ++    M+  G   +   Y  ++    + 
Sbjct: 371 REMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKS 430

Query: 376 GDVRGAGQITNIM 388
             VR    +   M
Sbjct: 431 ARVRDGCMLLKTM 443


>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 527

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/358 (23%), Positives = 165/358 (46%), Gaps = 3/358 (0%)

Query: 210 LLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAK 269
           ++A+  ++ Q S    +N L ++ E  + L  K+  ++  + S + NV  Y+ +ID   K
Sbjct: 106 VVAQGFQMDQVSYATLLNGLCKIGETRSAL--KLLRMI-EDRSTRPNVVMYNTIIDGLCK 162

Query: 270 ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKV 329
           +  + +A  +  +M+  GI P+++T + L++ +  AG L  A      +      P+   
Sbjct: 163 DKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYT 222

Query: 330 YNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389
           Y  ++ A    G+ K   +L+ +M   G++ +   Y  L+  +   G+V+ A Q+ + M 
Sbjct: 223 YTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMV 282

Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD 449
            +   P + S  ++++   ++   D+A +    ++     P+    +S+I  + K   + 
Sbjct: 283 QKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRIT 342

Query: 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLC 509
            AL+LL E+   G      TYT L+D L + Q +++A  L  K+ E G  P      +L 
Sbjct: 343 SALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYTYTALI 402

Query: 510 DMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
           D   + G  K A +    L  K  ++    +  +I+GL   G L +A  +   ME  G
Sbjct: 403 DGLCKGGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALAMKSKMEENG 460



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/260 (20%), Positives = 113/260 (43%)

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           + +++K++ +  K      A  + K+M   GI PD+ T  +L++ +   G +  +     
Sbjct: 10  IMEFNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFTVLG 69

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
            +   G+QP+    N+++      G+ K  +   D ++  G +  +  Y  LL    + G
Sbjct: 70  KILKLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCKIG 129

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
           + R A ++  ++     +P +     +++   +    ++A   +  M   G  P+    +
Sbjct: 130 ETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYS 189

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
           ++I  +     L +A  LL E+      P   TYT+L+D L +   + EA+ LL  +++ 
Sbjct: 190 TLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKE 249

Query: 497 GEAPPFKIQVSLCDMYARAG 516
           G  P      +L D Y   G
Sbjct: 250 GVKPNVVSYNTLMDGYCLIG 269



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/273 (20%), Positives = 126/273 (46%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           + P+   +  L+D L ++      K    V+++E  + NV  Y+ L+D +     +++A+
Sbjct: 216 INPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAK 275

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
           ++   M + G+ P++ +  +++    K+  +D A      +      P+   Y+S+I  +
Sbjct: 276 QMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGF 335

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
              G+    + L+  M   G       Y +LL +  +  ++  A  +   M+    QP  
Sbjct: 336 CKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNK 395

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
            + T L++   + G    A+  F +++  G + +      MI+   K+ +LD+AL +  +
Sbjct: 396 YTYTALIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALAMKSK 455

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           +E++G  P   T+ +++  L      ++AE+LL
Sbjct: 456 MEENGCIPDAVTFEIIIRSLFEKDQNDKAEKLL 488



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/329 (18%), Positives = 128/329 (38%), Gaps = 35/329 (10%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           + FQ +   Y+ L++   K      A ++L+ + +    P++V    ++    K   ++ 
Sbjct: 109 QGFQMDQVSYATLLNGLCKIGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNE 168

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A + +  + + G  P+   Y+++I  +  AGQ      L++ MI   I  +   Y  L+ 
Sbjct: 169 AYDLYSEMDARGIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMD 228

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
           +  + G V+ A  +  +M  E  +P + S   L++ Y   G+   A+  F  M++     
Sbjct: 229 ALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQ----- 283

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
                                          G  P   +Y +++D L + + ++EA  LL
Sbjct: 284 ------------------------------KGVNPNVYSYNIMIDRLCKSKRVDEAMNLL 313

Query: 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAG 550
            ++      P      SL D + + G    AL  L  +  + +      +  +++ L   
Sbjct: 314 REVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKN 373

Query: 551 GFLQDAQRVHGLMEAQGFAASERLKVALI 579
             L  A  +   M+ +G   ++    ALI
Sbjct: 374 QNLDKATALFMKMKERGIQPNKYTYTALI 402



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 73/361 (20%), Positives = 138/361 (38%), Gaps = 74/361 (20%)

Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338
           +L K+ + G  P+ +T   L+      G + ++    + + + GFQ D+  Y +++    
Sbjct: 67  VLGKILKLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLC 126

Query: 339 NAGQPKLGMSLVDMM--------------ITSGIERSEEI-------------------- 364
             G+ +  + L+ M+              I  G+ + + +                    
Sbjct: 127 KIGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVI 186

Query: 365 -YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA----------------- 406
            Y  L+  F   G +  A  + N M ++   P + + T+L++A                 
Sbjct: 187 TYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVM 246

Query: 407 ------------------YGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLL 448
                             Y   G+   A+  F  M++ G  P+      MI    K   +
Sbjct: 247 TKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRV 306

Query: 449 DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSL 508
           D+A+NLL E+      P   TY+ L+D   +L  I  A  LL ++   G+        SL
Sbjct: 307 DEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSL 366

Query: 509 CDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQ 566
            D   +     KA  AL F++ K+  + P+   +  +I+GL  GG  ++AQ++   +  +
Sbjct: 367 LDALCKNQNLDKA-TAL-FMKMKERGIQPNKYTYTALIDGLCKGGRHKNAQKLFQHLLVK 424

Query: 567 G 567
           G
Sbjct: 425 G 425



 Score = 47.4 bits (111), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 50/241 (20%), Positives = 98/241 (40%), Gaps = 6/241 (2%)

Query: 330 YNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389
           +N ++ + V        +SL   M   GIE        L+  F   G +  +  +   + 
Sbjct: 13  FNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFTVLGKIL 72

Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD 449
              +QP   +   L++     G+  ++    D ++  G + D    A+++    K     
Sbjct: 73  KLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCKIGETR 132

Query: 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLC 509
            AL LL  +E     P    Y  ++D L + +L+NEA  L  ++   G  P      +L 
Sbjct: 133 SALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLI 192

Query: 510 DMYARAGIEKKALQALGFL-EAKKEQMGPDDFERII--NGLLAGGFLQDAQRVHGLMEAQ 566
             +  AG   + ++A G L E   + + P+ +   I  + L   G +++A+ +  +M  +
Sbjct: 193 YGFCLAG---QLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKE 249

Query: 567 G 567
           G
Sbjct: 250 G 250


>gi|356528730|ref|XP_003532952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g73710-like [Glycine max]
          Length = 963

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/356 (24%), Positives = 161/356 (45%), Gaps = 18/356 (5%)

Query: 239 LYFKVAELVLSEESFQ--------TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVP 290
           LY K   L  + E F          +V  ++ +I     +  L +AE +L  M E G+ P
Sbjct: 280 LYGKAGRLSEAAEVFAEMLKAGVAVDVWTFNTMIFVCGSQGDLAEAEALLGMMEEKGVAP 339

Query: 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV 350
           D  T  + + +Y++A ++  A   ++ +R  G  PD+  Y +++         +    L+
Sbjct: 340 DTKTFNIFLSLYAEARDIGAAVLCYKRIREAGLCPDEVTYRALLGVLCRKNMVREVEDLI 399

Query: 351 DMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE-EFQPTLESCTLLVEAYGQ 409
           D M  + +   E     ++  +   GDV  A  +    ++  E    + S   +++ + +
Sbjct: 400 DEMERAFVSVDEHCVPGIVEMYVGEGDVDKAFDLLKKFQVNGEMSSNIRSA--IMDVFAE 457

Query: 410 AGDPDQARSNFDYMIR--LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGP 467
            G  ++A   F Y  R   G K D      MI AYGK  L DKA++L   ++  G  P  
Sbjct: 458 KGLWEEAEDVF-YRGRNLAGRKRDVLECNVMIKAYGKAKLYDKAISLFKGMKNHGTWPNE 516

Query: 468 ATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGF 527
           +TY  LV  L    L+++A  L+ ++ E+G  PP +   ++   YAR G    A+    F
Sbjct: 517 STYNSLVQMLSGADLVDQAMDLVDEMQEVGFKPPCQTFSAVIGCYARLGQLSDAVSV--F 574

Query: 528 LEAKKEQMGPDD--FERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
            E  +  + P++  +  +ING    G L++A +   +ME  G +++  +  +L+ S
Sbjct: 575 KEMVRTGVKPNEVVYGSLINGFAEHGSLEEALKYFHMMEESGLSSNLVVLTSLLKS 630



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 113/231 (48%), Gaps = 1/231 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V + + +I A+ K    + A  + K M  +G  P+  T   LV M S A  +D+A +  
Sbjct: 480 DVLECNVMIKAYGKAKLYDKAISLFKGMKNHGTWPNESTYNSLVQMLSGADLVDQAMDLV 539

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + ++  GF+P  + ++++I  Y   GQ    +S+   M+ +G++ +E +Y +L+  FA+ 
Sbjct: 540 DEMQEVGFKPPCQTFSAVIGCYARLGQLSDAVSVFKEMVRTGVKPNEVVYGSLINGFAEH 599

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A +  ++M        L   T L+++Y + G+ + A++ ++ M  +    D    
Sbjct: 600 GSLEEALKYFHMMEESGLSSNLVVLTSLLKSYCKVGNLEGAKAIYERMKNMEGGLDLVAC 659

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
            SMI  +    L+ +A      L + G     +  T++  + G + LI+EA
Sbjct: 660 NSMIGLFADLGLVSEAKLAFENLREMGRADAISYATIMYLYKG-VGLIDEA 709



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 146/336 (43%), Gaps = 19/336 (5%)

Query: 218 LQPSRIDWINLLDRLREQNTQ----LYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCL 273
           ++P+ + + +L++   E  +      YF + E    E    +N+   + L+ ++ K   L
Sbjct: 582 VKPNEVVYGSLINGFAEHGSLEEALKYFHMME----ESGLSSNLVVLTSLLKSYCKVGNL 637

Query: 274 EDAERILKKMN--ENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYN 331
           E A+ I ++M   E G+  D+V    ++ +++  G +  AK AFE+LR  G + D   Y 
Sbjct: 638 EGAKAIYERMKNMEGGL--DLVACNSMIGLFADLGLVSEAKLAFENLREMG-RADAISYA 694

Query: 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391
           +++  Y   G     + + + M  SG+ R    Y  +L  +A  G     G++ + M  +
Sbjct: 695 TIMYLYKGVGLIDEAIEIAEEMKLSGLLRDCVSYNKVLVCYAANGQFYECGELIHEMISQ 754

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT--ASMIAAYGKKNLLD 449
           +  P   +  +L     + G P +A +  +   + G KP  R T   ++ +  G  NL  
Sbjct: 755 KLLPNDGTFKVLFTILKKGGIPTEAVAQLESSYQEG-KPYARQTTFTALYSLVGMHNLAL 813

Query: 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLC 509
           ++    +E E D      + + V +   G    IN+A  +  K+ +    P     + L 
Sbjct: 814 ESAQTFIESEVD---LDSSAFNVAIYAYGSAGDINKALNIYMKMRDEHLGPDLVTYIYLV 870

Query: 510 DMYARAGIEKKALQALGFLEAKKEQMGPDDFERIIN 545
             Y +AG+ +   Q    LE  + +     F+ II+
Sbjct: 871 GCYGKAGMVEGVKQIYSQLEYGEIESNESLFKAIID 906



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 123/296 (41%), Gaps = 27/296 (9%)

Query: 232 LREQNT-QLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVP 290
           L+EQ+T Q   ++ E   S+  +  N   Y+ ++ A  K    +        M +NG++P
Sbjct: 79  LKEQSTWQRAARIFEWFKSQTWYTPNAIHYNVVLRALGKAQQWDQLRLCWLDMAKNGVLP 138

Query: 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAG--------- 341
              T ++LV +Y KAG +  A      +R  GF PD+    +++    + G         
Sbjct: 139 TNNTYSMLVDVYGKAGLVQEALLWIRHMRVRGFFPDEVTMCTVVKVLKDVGDFDRAHRFY 198

Query: 342 ----QPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC-----------GDVRGAGQITN 386
               + K+ ++ +++  + GI  S     ++  SF Q              V G  + TN
Sbjct: 199 KGWCEGKVELNDLELEDSLGINNSSNGSASMGISFKQFLSTELFKIGGRAPVSGEARSTN 258

Query: 387 IMRIEEFQ-PTLESC-TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGK 444
              +   Q P L +   +L++ YG+AG   +A   F  M++ G   D     +MI   G 
Sbjct: 259 SSSLNGPQKPRLSNTYNVLIDLYGKAGRLSEAAEVFAEMLKAGVAVDVWTFNTMIFVCGS 318

Query: 445 KNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
           +  L +A  LL  +E+ G  P   T+ + +      + I  A     +I E G  P
Sbjct: 319 QGDLAEAEALLGMMEEKGVAPDTKTFNIFLSLYAEARDIGAAVLCYKRIREAGLCP 374



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 60/281 (21%), Positives = 115/281 (40%), Gaps = 42/281 (14%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E  F+   + +S +I  +A+   L DA  + K+M   G+ P+ V    L++ +++ G+
Sbjct: 542 MQEVGFKPPCQTFSAVIGCYARLGQLSDAVSVFKEMVRTGVKPNEVVYGSLINGFAEHGS 601

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L+ A + F  +   G   +  V  S                                   
Sbjct: 602 LEEALKYFHMMEESGLSSNLVVLTS----------------------------------- 626

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           LL+S+ + G++ GA  I   M+  E    L +C  ++  +   G   +A+  F+ +  +G
Sbjct: 627 LLKSYCKVGNLEGAKAIYERMKNMEGGLDLVACNSMIGLFADLGLVSEAKLAFENLREMG 686

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYT-VLVDWLGRLQLINEA 486
            + D    A+++  Y    L+D+A+ +  E++  G      +Y  VLV +    Q     
Sbjct: 687 -RADAISYATIMYLYKGVGLIDEAIEIAEEMKLSGLLRDCVSYNKVLVCYAANGQFYECG 745

Query: 487 EQLLGKISE--LGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
           E +   IS+  L     FK+   L  +  + GI  +A+  L
Sbjct: 746 ELIHEMISQKLLPNDGTFKV---LFTILKKGGIPTEAVAQL 783



 Score = 40.8 bits (94), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 8/109 (7%)

Query: 237 TQLYFKVAELVLSEESFQTNVRD--------YSKLIDAHAKENCLEDAERILKKMNENGI 288
           T LY  V    L+ ES QT +          ++  I A+     +  A  I  KM +  +
Sbjct: 800 TALYSLVGMHNLALESAQTFIESEVDLDSSAFNVAIYAYGSAGDINKALNIYMKMRDEHL 859

Query: 289 VPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
            PD+VT   LV  Y KAG ++  K+ +  L     + ++ ++ ++I AY
Sbjct: 860 GPDLVTYIYLVGCYGKAGMVEGVKQIYSQLEYGEIESNESLFKAIIDAY 908


>gi|302826103|ref|XP_002994591.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
 gi|300137362|gb|EFJ04342.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
          Length = 599

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 139/321 (43%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ ++D +A+      A ++ + M   G+ PDIV   +LVH + KAG +D+A    E++ 
Sbjct: 230 YAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALGVLENIE 289

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           ++   P  + Y S++  YV  G  +  + + D + T+G+      Y +LL   A+   + 
Sbjct: 290 ANRLLPTIETYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQME 349

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  + N M      P   S T L E Y +AGD ++A   F  M +     D     +++
Sbjct: 350 NARLMLNEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAYGALL 409

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            A  K   + +A  +  ++   G +    TY  ++D   R   +++A  LL  + + G  
Sbjct: 410 KACCKSGAMQRAAEVFQQITDAGLKHNRITYCTMLDGWARKGELSKARDLLNDMQKHGFH 469

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
                  S      R+G  ++  + L  +  KK ++    +  +I+G LA      A   
Sbjct: 470 LDTICYTSFIKACFRSGDTEEVTETLAVMREKKLEVNARTYTTLIHGWLAAADPDQAISC 529

Query: 560 HGLMEAQGFAASERLKVALIS 580
           +   +A G      L   L+S
Sbjct: 530 YEQAKASGLQLDSALSNCLLS 550



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 77/336 (22%), Positives = 147/336 (43%)

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           +R+Y  L+D +A+      A    + M  + I P++   T L+H Y++A +++ A    E
Sbjct: 17  LREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVACTE 76

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
            + S G Q ++ V+ S+I  Y +AG  +      +      +     +Y ++++++ Q G
Sbjct: 77  EMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAG 136

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
           ++     +   M  E FQ  L   T ++  + +  D ++  S F  +   G  P      
Sbjct: 137 NMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYG 196

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
            ++  + K   + KAL++L E++K G  P    Y +++D   R      A ++   +   
Sbjct: 197 CIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSA 256

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDA 556
           G  P   I   L   + +AG   KAL  L  +EA +     + +  I++G + GG +Q A
Sbjct: 257 GLKPDIVIYNILVHAFCKAGRMDKALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKA 316

Query: 557 QRVHGLMEAQGFAASERLKVALISSQTFNRQRQPTR 592
             V   ++  G         +L+S     RQ +  R
Sbjct: 317 LEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENAR 352



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 143/323 (44%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ LI A+A+   +E A    ++M   GI  +      ++  Y+ AGN + A+  F
Sbjct: 51  NVHIYTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWF 110

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E  ++    P   VYNS++ AY  AG  +   +L+  M   G + +  +Y  +L  FA+ 
Sbjct: 111 EKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEI 170

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
            D        + ++     PT  +   +V+ + +AG+  +A    + M + G  P+    
Sbjct: 171 RDEEKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIY 230

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
           A ++  Y +      A  +  ++   G +P    Y +LV    +   +++A  +L  I  
Sbjct: 231 AMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALGVLENIEA 290

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
               P  +   S+ D Y + G  +KAL+    ++    + G   +  +++GL     +++
Sbjct: 291 NRLLPTIETYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMEN 350

Query: 556 AQRVHGLMEAQGFAASERLKVAL 578
           A+ +   M A G   +ER   AL
Sbjct: 351 ARLMLNEMLANGVVPNERSYTAL 373



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 112/236 (47%), Gaps = 8/236 (3%)

Query: 248 LSEESFQTNVRDYSKLIDAHAK----ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS 303
           + EE FQ N+  Y+ +++  A+    E CL        ++   G+ P   T   +V +++
Sbjct: 148 MEEEGFQGNLGLYTTVLNGFAEIRDEEKCLS----FFHRLKACGLSPTAATYGCIVKLFT 203

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363
           KAGN+ +A +  E +  HG  P+K +Y  ++  Y   G       + + M+++G++    
Sbjct: 204 KAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIV 263

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
           IY  L+ +F + G +  A  +   +      PT+E+ T +++ Y + G+  +A   FD +
Sbjct: 264 IYNILVHAFCKAGRMDKALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKALEVFDRI 323

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
              G +P      S+++   K   ++ A  +L E+  +G  P   +YT L +   R
Sbjct: 324 KTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEMLANGVVPNERSYTALTEGYAR 379



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/346 (20%), Positives = 134/346 (38%), Gaps = 39/346 (11%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           +  Q N   +  +I  +A     E AE   +K     +VP  +    +V  Y +AGN++ 
Sbjct: 81  QGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNMET 140

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
            +     +   GFQ +  +Y +++  +      +  +S    +   G+  +   Y  +++
Sbjct: 141 VEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYGCIVK 200

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
            F + G++  A  I   M      P      ++++ Y + GD   A   ++ M+  G KP
Sbjct: 201 LFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKP 260

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKD----------------------------- 461
           D      ++ A+ K   +DKAL +L  +E +                             
Sbjct: 261 DIVIYNILVHAFCKAGRMDKALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKALEVF 320

Query: 462 ------GFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
                 G  PG  +Y  L+  L + + +  A  +L ++   G  P  +   +L + YARA
Sbjct: 321 DRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEMLANGVVPNERSYTALTEGYARA 380

Query: 516 GIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRV 559
           G  +KA     F   KKE +  D   +  ++      G +Q A  V
Sbjct: 381 GDVEKAFGM--FQRMKKENLAIDIVAYGALLKACCKSGAMQRAAEV 424



 Score = 42.0 bits (97), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 68/166 (40%), Gaps = 3/166 (1%)

Query: 383 QITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH-KPDDRCTASMIAA 441
           +I N  ++ + +P L    LLV+ Y + GD   AR+ F+ M R  H KP+     S+I A
Sbjct: 4   KIVNAFQVID-KPVLREYGLLVDFYARHGDKVAARATFEAM-RASHIKPNVHIYTSLIHA 61

Query: 442 YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
           Y +   ++ A+    E+   G +   A +  ++           AE    K       P 
Sbjct: 62  YAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPG 121

Query: 502 FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
             +  S+   Y +AG  +     L  +E +  Q     +  ++NG 
Sbjct: 122 GIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGF 167


>gi|363543445|ref|NP_001241732.1| salt-inducible protein [Zea mays]
 gi|195610062|gb|ACG26861.1| salt-inducible protein [Zea mays]
          Length = 716

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 114/245 (46%), Gaps = 4/245 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS ++D +A+    E+   +  +   +G  PD V   VL  M+ +AG+ D  +  F+ +R
Sbjct: 261 YSAVLDVYAQLGMKEEVLALFDRARGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFKEMR 320

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +P+  VYN+++ A    G+P L  +L + MI  G+E +     AL + + +    R
Sbjct: 321 EVGIKPNIFVYNALLEALGKTGKPGLARNLFEEMIDQGVEPNARTLTALAKIYGRARWGR 380

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM----IRLGHKPDDRCT 435
            A Q+ + MR  +       C  L+      G   +A   F+ M     R   KPD    
Sbjct: 381 DALQLWDKMRELKLPADSILCNTLLSMCADVGLVAEAEQLFNEMKDPECRDVPKPDKWSY 440

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            +MI  YG     D AL L  E+ K G EP   +YT+++  LG+   I +A ++L    E
Sbjct: 441 TAMINIYGSNGDTDSALQLFAEMLKGGIEPNIMSYTIVIQCLGKAHRIQQAVEVLESGLE 500

Query: 496 LGEAP 500
            G  P
Sbjct: 501 KGLKP 505



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 134/312 (42%), Gaps = 9/312 (2%)

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS-HGFQPDKKVYNSMI 334
           AER+   M + G+  D +T + L+    +     +A E FE + +  G  PD+  Y++++
Sbjct: 206 AERLALDMLDAGVPLDNITYSTLITAARRCRQFAKAVEWFERMYAADGVLPDEVTYSAVL 265

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
             Y   G  +  ++L D    SG +     +  L + F + GD  G   +   MR    +
Sbjct: 266 DVYAQLGMKEEVLALFDRARGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFKEMREVGIK 325

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P +     L+EA G+ G P  AR+ F+ MI  G +P+ R   ++   YG+      AL L
Sbjct: 326 PNIFVYNALLEALGKTGKPGLARNLFEEMIDQGVEPNARTLTALAKIYGRARWGRDALQL 385

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI--SELGEAP-PFKIQ-VSLCD 510
             ++ +            L+     + L+ EAEQL  ++   E  + P P K    ++ +
Sbjct: 386 WDKMRELKLPADSILCNTLLSMCADVGLVAEAEQLFNEMKDPECRDVPKPDKWSYTAMIN 445

Query: 511 MYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
           +Y   G    ALQ   F E  K  + P+   +  +I  L     +Q A  V      +G 
Sbjct: 446 IYGSNGDTDSALQL--FAEMLKGGIEPNIMSYTIVIQCLGKAHRIQQAVEVLESGLEKGL 503

Query: 569 AASERLKVALIS 580
              +RL   L+S
Sbjct: 504 KPDDRLCGCLLS 515


>gi|219884651|gb|ACL52700.1| unknown [Zea mays]
          Length = 716

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 115/245 (46%), Gaps = 4/245 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS ++D +A+    E+   +  +   +G  PD V   VL  M+ +AG+ D  +  F+ +R
Sbjct: 261 YSAVLDVYAQLGMKEEVLALFDRARGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFKEMR 320

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +P+  VYN+++ A    G+P L  +L + MI  G+E +     AL + + +    R
Sbjct: 321 EVGIKPNIFVYNALLEALGKTGKPGLARNLFEEMIDQGVEPNARTLTALAKIYGRARWGR 380

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM----IRLGHKPDDRCT 435
            A Q+ + MR  +       C  L+      G   +A   F+ M     R   KPD    
Sbjct: 381 DALQLWDKMRELKLPADSILCNTLLSMCADVGLVAEAEQLFNEMKGPECRDVPKPDKWSY 440

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            +MI  YG     D AL L  E+ K G EP   +YT+++  LG+ + I +A ++L    E
Sbjct: 441 TAMINIYGSNGDTDSALQLFAEMLKGGIEPNIMSYTIVIQCLGKARRIQQAVEVLESGLE 500

Query: 496 LGEAP 500
            G  P
Sbjct: 501 KGLKP 505



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 137/316 (43%), Gaps = 17/316 (5%)

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS-HGFQPDKKVYNSMI 334
           AER+   M + G+  D +T + L+    +     +A E FE + +  G  PD+  Y++++
Sbjct: 206 AERLALDMLDAGVPLDNITYSTLITAARRCRQFAKAVEWFERMYAADGVLPDEVTYSAVL 265

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
             Y   G  +  ++L D    SG +     +  L + F + GD  G   +   MR    +
Sbjct: 266 DVYAQLGMKEEVLALFDRARGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFKEMREVGIK 325

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P +     L+EA G+ G P  AR+ F+ MI  G +P+ R   ++   YG+      AL L
Sbjct: 326 PNIFVYNALLEALGKTGKPGLARNLFEEMIDQGVEPNARTLTALAKIYGRARWGRDALQL 385

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI--SELGEAP-PFKIQ-VSLCD 510
             ++ +            L+     + L+ EAEQL  ++   E  + P P K    ++ +
Sbjct: 386 WDKMRELKLPADSILCNTLLSMCADVGLVAEAEQLFNEMKGPECRDVPKPDKWSYTAMIN 445

Query: 511 MYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEA----- 565
           +Y   G    ALQ   F E  K  + P+    I++  +    L  A+R+   +E      
Sbjct: 446 IYGSNGDTDSALQL--FAEMLKGGIEPN----IMSYTIVIQCLGKARRIQQAVEVLESGL 499

Query: 566 -QGFAASERLKVALIS 580
            +G    +RL   L+S
Sbjct: 500 EKGLKPDDRLCGCLLS 515



 Score = 43.9 bits (102), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 78/173 (45%), Gaps = 27/173 (15%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +I+ +      + A ++  +M + GI P+I++ T+++    KA  + +A E  ES  
Sbjct: 440 YTAMINIYGSNGDTDSALQLFAEMLKGGIEPNIMSYTIVIQCLGKARRIQQAVEVLESGL 499

Query: 320 SHGFQPDKKVYNSMI-MAYVNAGQPKLGMSLVDM-MITSGIERSEEIYLALLRSFAQCGD 377
             G +PD ++   ++ +  +++G+        +M M+ S +E+  +  + L+R       
Sbjct: 500 EKGLKPDDRLCGCLLSVIALSSGE--------EMEMVLSSLEKVNQNLVKLIR------- 544

Query: 378 VRGAGQITNIMRIEEFQPTLES---------CTLLVEAYGQAGDPDQ-ARSNF 420
           V G  Q+      EE +  L S         C  L++     G P Q AR  F
Sbjct: 545 VLGDAQVGGDDITEELKSVLNSAAPEVRRPYCNCLIDVCRNHGFPPQRAREVF 597


>gi|168047776|ref|XP_001776345.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672305|gb|EDQ58844.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 503

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 118/237 (49%), Gaps = 3/237 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAK---ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK 304
           + E   Q NV  Y+ LI  + +   +     AE ++++M  +G+ PD+VT T+L+  Y  
Sbjct: 235 MRERGIQPNVGTYNALITGYLEAKPKRQFVVAEGLIEEMEASGLYPDVVTFTMLLGAYGH 294

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
            G  ++A++ F  +++ G QP+   Y ++I AY     P+      +M+   G+  + E 
Sbjct: 295 EGLTEQAEQVFNRMKARGVQPNSYSYTALINAYAERRCPEKAARAFEMIRKQGVNPTVET 354

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
           Y ALL ++ + GD+     +   M++E    T  +   +++A+ + G   +AR   +   
Sbjct: 355 YTALLDAYRRAGDLEMVQAVWKSMKVEGCVATRVTYMTILDAFQKQGRYKEARDLIEEFK 414

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ 481
             GHKPD      ++ +Y +     KA ++LLE++  GF P   TY  L+    R++
Sbjct: 415 NQGHKPDLMVYNMLLNSYMRGGRHVKASDILLEMKTAGFLPDSFTYCTLIYGFLRVR 471



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 129/303 (42%), Gaps = 10/303 (3%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  +   I A      L++A  I  +M +  +  ++V   +L+  Y + G L+ A+   
Sbjct: 173 SVSVFGTFIKAFCDAGRLKEALLITTEMEKLNVPFNVVIYNILIDAYGRVGQLEEAEGLM 232

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPK----LGMSLVDMMITSGIERSEEIYLALLRS 371
             +R  G QP+   YN++I  Y+ A +PK    +   L++ M  SG+      +  LL +
Sbjct: 233 TEMRERGIQPNVGTYNALITGYLEA-KPKRQFVVAEGLIEEMEASGLYPDVVTFTMLLGA 291

Query: 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
           +   G    A Q+ N M+    QP   S T L+ AY +   P++A   F+ + + G  P 
Sbjct: 292 YGHEGLTEQAEQVFNRMKARGVQPNSYSYTALINAYAERRCPEKAARAFEMIRKQGVNPT 351

Query: 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
                +++ AY +   L+    +   ++ +G      TY  ++D   +     EA  L+ 
Sbjct: 352 VETYTALLDAYRRAGDLEMVQAVWKSMKVEGCVATRVTYMTILDAFQKQGRYKEARDLIE 411

Query: 492 KISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGG 551
           +    G  P   +   L + Y R G   KA   L  LE K     PD F       L  G
Sbjct: 412 EFKNQGHKPDLMVYNMLLNSYMRGGRHVKASDIL--LEMKTAGFLPDSFTYCT---LIYG 466

Query: 552 FLQ 554
           FL+
Sbjct: 467 FLR 469



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 131/317 (41%), Gaps = 23/317 (7%)

Query: 214 WKELLQPSRID------WINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAH 267
           W  L +P   D          L R+   +  L F    ++  ++ F + V  Y+ LI   
Sbjct: 59  WVRLHEPCLCDPRSFTILFTFLGRMAMPDQALVF--FGMLPKDKQFHS-VHVYNTLI--- 112

Query: 268 AKENCLEDAERILKKMNEN----GIVPDIVTSTVLVHMYSKAG-NLDRAKEAFESLRSHG 322
               CL +  R   ++  N     + PD VT +VL++   K G +L      ++ +   G
Sbjct: 113 ---TCLTNCNRYDLELYHNLAFYEVFPDSVTFSVLMNSAVKGGGSLKEVWALYQDMVQRG 169

Query: 323 FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAG 382
             P   V+ + I A+ +AG+ K  + +   M    +  +  IY  L+ ++ + G +  A 
Sbjct: 170 ISPSVSVFGTFIKAFCDAGRLKEALLITTEMEKLNVPFNVVIYNILIDAYGRVGQLEEAE 229

Query: 383 QITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ---ARSNFDYMIRLGHKPDDRCTASMI 439
            +   MR    QP + +   L+  Y +A    Q   A    + M   G  PD      ++
Sbjct: 230 GLMTEMRERGIQPNVGTYNALITGYLEAKPKRQFVVAEGLIEEMEASGLYPDVVTFTMLL 289

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            AYG + L ++A  +   ++  G +P   +YT L++     +   +A +    I + G  
Sbjct: 290 GAYGHEGLTEQAEQVFNRMKARGVQPNSYSYTALINAYAERRCPEKAARAFEMIRKQGVN 349

Query: 500 PPFKIQVSLCDMYARAG 516
           P  +   +L D Y RAG
Sbjct: 350 PTVETYTALLDAYRRAG 366



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 103/229 (44%), Gaps = 12/229 (5%)

Query: 218 LQPSRIDWINLL-----DRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC 272
           L P  + +  LL     + L EQ  Q++ +     +     Q N   Y+ LI+A+A+  C
Sbjct: 278 LYPDVVTFTMLLGAYGHEGLTEQAEQVFNR-----MKARGVQPNSYSYTALINAYAERRC 332

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
            E A R  + + + G+ P + T T L+  Y +AG+L+  +  ++S++  G    +  Y +
Sbjct: 333 PEKAARAFEMIRKQGVNPTVETYTALLDAYRRAGDLEMVQAVWKSMKVEGCVATRVTYMT 392

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           ++ A+   G+ K    L++     G +    +Y  LL S+ + G    A  I   M+   
Sbjct: 393 ILDAFQKQGRYKEARDLIEEFKNQGHKPDLMVYNMLLNSYMRGGRHVKASDILLEMKTAG 452

Query: 393 FQP-TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIA 440
           F P +   CT L+  + +  D  +A      M+  G  PD +  A + A
Sbjct: 453 FLPDSFTYCT-LIYGFLRVRDQTKALKYHREMMNRGQLPDPKTYAKLRA 500



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/298 (22%), Positives = 126/298 (42%), Gaps = 11/298 (3%)

Query: 299 VHMYSKA----GNLDRAK-EAFESLRSHGFQPDKKVYNSMIMAYVNAGQP-KLGMSLVDM 352
           VH+Y+       N +R   E + +L  +   PD   ++ ++ + V  G   K   +L   
Sbjct: 105 VHVYNTLITCLTNCNRYDLELYHNLAFYEVFPDSVTFSVLMNSAVKGGGSLKEVWALYQD 164

Query: 353 MITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGD 412
           M+  GI  S  ++   +++F   G ++ A  IT  M        +    +L++AYG+ G 
Sbjct: 165 MVQRGISPSVSVFGTFIKAFCDAGRLKEALLITTEMEKLNVPFNVVIYNILIDAYGRVGQ 224

Query: 413 PDQARSNFDYMIRLGHKPDDRCTASMIAAY---GKKNLLDKALNLLLELEKDGFEPGPAT 469
            ++A      M   G +P+     ++I  Y     K     A  L+ E+E  G  P   T
Sbjct: 225 LEEAEGLMTEMRERGIQPNVGTYNALITGYLEAKPKRQFVVAEGLIEEMEASGLYPDVVT 284

Query: 470 YTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLE 529
           +T+L+   G   L  +AEQ+  ++   G  P      +L + YA     +KA +A   + 
Sbjct: 285 FTMLLGAYGHEGLTEQAEQVFNRMKARGVQPNSYSYTALINAYAERRCPEKAARAFEMIR 344

Query: 530 AKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQ 587
            +      + +  +++     G L+  Q V   M+ +G  A+    + ++ +  F +Q
Sbjct: 345 KQGVNPTVETYTALLDAYRRAGDLEMVQAVWKSMKVEGCVATRVTYMTILDA--FQKQ 400


>gi|218188645|gb|EEC71072.1| hypothetical protein OsI_02831 [Oryza sativa Indica Group]
          Length = 800

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 134/312 (42%), Gaps = 4/312 (1%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           + F  NV  Y+ L+  H  +   + A  +L +M +NG+  +  T   L++     G +  
Sbjct: 450 KGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCE 509

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
             E  +   + GF P    YNS+I  ++ AG      ++   M   GI  +   Y + + 
Sbjct: 510 VGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFID 569

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
            + +      A ++ N +R +  +P + +   L+  + Q G+   A      M++ G  P
Sbjct: 570 GYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIYGFCQEGNMSHALQVLVLMLKDGLLP 629

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           +     S I  Y    ++++AL    ++ K+G +   ATYT L+D   +   +  A +L 
Sbjct: 630 NISVYNSFITGYKNLKMMEEALRFYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLY 689

Query: 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLL 548
            ++   G  P      +L     R G    A + L   E  +  + P+   +  +ING L
Sbjct: 690 SEMVAKGNIPDHITFTALTHGLCRNGDIDDARKLLD--EMNRLDIRPNVLMYNMLINGYL 747

Query: 549 AGGFLQDAQRVH 560
             G LQ+A R+H
Sbjct: 748 RNGKLQEAFRLH 759



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 99/219 (45%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  Y+  ID + K +C + A ++L  +   G+ PDI     L++ + + GN+  A +  
Sbjct: 560 NIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIYGFCQEGNMSHALQVL 619

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G  P+  VYNS I  Y N    +  +   + MI  GI+     Y  L+  F++ 
Sbjct: 620 VLMLKDGLLPNISVYNSFITGYKNLKMMEEALRFYEKMIKEGIDLDTATYTTLIDGFSKD 679

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G+V  A ++ + M  +   P   + T L     + GD D AR   D M RL  +P+    
Sbjct: 680 GNVTFALKLYSEMVAKGNIPDHITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMY 739

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
             +I  Y +   L +A  L  E+ +    P   TY +LV
Sbjct: 740 NMLINGYLRNGKLQEAFRLHDEMLERKIMPDDTTYDILV 778



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 132/308 (42%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI    +   + +A  + +KMNE G+ P IVT   L+  Y   G +D A + +  + 
Sbjct: 389 YNILIHWLCQRRKIREALNLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMP 448

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             GF P+   Y +++  ++N        +L+  M  +G+  ++  Y  L+      G V 
Sbjct: 449 GKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVC 508

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
             G++      E F PT  +   ++  + +AG    A + +  M   G  P+     S I
Sbjct: 509 EVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFI 568

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             Y K +  D AL +L ++   G  P  A Y  L+    +   ++ A Q+L  + + G  
Sbjct: 569 DGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIYGFCQEGNMSHALQVLVLMLKDGLL 628

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P   +  S    Y    + ++AL+    +  +   +    +  +I+G    G +  A ++
Sbjct: 629 PNISVYNSFITGYKNLKMMEEALRFYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKL 688

Query: 560 HGLMEAQG 567
           +  M A+G
Sbjct: 689 YSEMVAKG 696



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/292 (22%), Positives = 124/292 (42%), Gaps = 2/292 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + +     N   Y+ LI+       + +   +LK+    G VP  +T   +++ + KAG 
Sbjct: 482 MKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGM 541

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A   ++ + + G  P+   Y S I  Y       L + +++ +   G+      Y +
Sbjct: 542 MGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNS 601

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+  F Q G++  A Q+  +M  +   P +      +  Y      ++A   ++ MI+ G
Sbjct: 602 LIYGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRFYEKMIKEG 661

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
              D     ++I  + K   +  AL L  E+   G  P   T+T L   L R   I++A 
Sbjct: 662 IDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTALTHGLCRNGDIDDAR 721

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD 539
           +LL +++ L   P   +   L + Y R G  ++A +     E  + ++ PDD
Sbjct: 722 KLLDEMNRLDIRPNVLMYNMLINGYLRNGKLQEAFRLHD--EMLERKIMPDD 771



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 116/271 (42%), Gaps = 1/271 (0%)

Query: 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320
           + L+  +  +  +  A  I ++   +G+VP  VT TVL+   ++ G  ++A E    +R 
Sbjct: 286 TTLMHGYCLQREVRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRD 345

Query: 321 HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRG 380
           HG  P    +N +I   +N    K  +SL   M  SGI  +   Y  L+    Q   +R 
Sbjct: 346 HGLLPSTNEFNMVIKGLLNDKLWKDAVSLFKEMADSGIPDAFT-YNILIHWLCQRRKIRE 404

Query: 381 AGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIA 440
           A  +   M     +P + +   L+  Y   G  D+A   +  M   G  P+     +++ 
Sbjct: 405 ALNLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMK 464

Query: 441 AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
            +  K   DKA  LL E++++G      TY  L++ L  +  + E  ++L +    G  P
Sbjct: 465 GHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVP 524

Query: 501 PFKIQVSLCDMYARAGIEKKALQALGFLEAK 531
                 S+ + + +AG+   A      + AK
Sbjct: 525 TAMTYNSIINGFIKAGMMGSAFAVYQQMCAK 555



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 71/321 (22%), Positives = 130/321 (40%), Gaps = 1/321 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           +  ++ A  KE   +DA R+  +M  + I PD    +V +    K  + +RA      ++
Sbjct: 180 FDVVMRACFKEGMYDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLVLRKMQ 239

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             GF P    +NS++   V  G+ +  + + D ++ +G + S  +   L+  +    +VR
Sbjct: 240 DAGFVPWDFTFNSVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQREVR 299

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  I      +   PT  + T+L+    + G P++A      M   G  P       +I
Sbjct: 300 KALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNMVI 359

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
                  L   A++L  E+   G  P   TY +L+ WL + + I EA  L  K++E G  
Sbjct: 360 KGLLNDKLWKDAVSLFKEMADSGI-PDAFTYNILIHWLCQRRKIREALNLWEKMNETGVK 418

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P      SL   Y   G   +A++    +  K        +  ++ G +       A  +
Sbjct: 419 PYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYAL 478

Query: 560 HGLMEAQGFAASERLKVALIS 580
              M+  G + ++     LI+
Sbjct: 479 LAEMKQNGVSCNDYTYNTLIN 499



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 56/116 (48%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           +E    +   Y+ LID  +K+  +  A ++  +M   G +PD +T T L H   + G++D
Sbjct: 659 KEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTALTHGLCRNGDID 718

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
            A++  + +     +P+  +YN +I  Y+  G+ +    L D M+   I   +  Y
Sbjct: 719 DARKLLDEMNRLDIRPNVLMYNMLINGYLRNGKLQEAFRLHDEMLERKIMPDDTTY 774



 Score = 46.2 bits (108), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 76/172 (44%), Gaps = 1/172 (0%)

Query: 233 REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDI 292
           +E N     +V  L+L ++    N+  Y+  I  +     +E+A R  +KM + GI  D 
Sbjct: 608 QEGNMSHALQVLVLML-KDGLLPNISVYNSFITGYKNLKMMEEALRFYEKMIKEGIDLDT 666

Query: 293 VTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDM 352
            T T L+  +SK GN+  A + +  + + G  PD   + ++       G       L+D 
Sbjct: 667 ATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTALTHGLCRNGDIDDARKLLDE 726

Query: 353 MITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
           M    I  +  +Y  L+  + + G ++ A ++ + M   +  P   +  +LV
Sbjct: 727 MNRLDIRPNVLMYNMLINGYLRNGKLQEAFRLHDEMLERKIMPDDTTYDILV 778



 Score = 42.4 bits (98), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 81/192 (42%)

Query: 283 MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
           M   G+ PD  + T L+ + +++ +   A      +R  G   D  +++ ++ A    G 
Sbjct: 133 MEARGVTPDAKSRTDLLAVTARSASAADALALLAEMRGKGHPLDAWMFDVVMRACFKEGM 192

Query: 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402
               + L D M  S IE  + +    + S  +  D   A  +   M+   F P   +   
Sbjct: 193 YDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLVLRKMQDAGFVPWDFTFNS 252

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           +V+   + G  ++A    D ++  G K       +++  Y  +  + KAL++  E  +DG
Sbjct: 253 VVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQREVRKALDIFEETLRDG 312

Query: 463 FEPGPATYTVLV 474
             P   TYTVL+
Sbjct: 313 LVPTDVTYTVLI 324


>gi|168036199|ref|XP_001770595.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678116|gb|EDQ64578.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 743

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 139/340 (40%), Gaps = 36/340 (10%)

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
           + +L +M  +G VPD  T   L+   SKA   D A  AF+ +   G QP +  Y+ M++ 
Sbjct: 31  DELLGQMLGDGCVPDDYTFNTLIMSASKADYADYATRAFQMMLEKGVQPTRLTYSMMMLL 90

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           Y   G+ +        M+ SGI+     Y A++  + +CG    A +I   M   +  P 
Sbjct: 91  YQKNGKVEDAEVAFSHMLQSGIQVVAA-YSAMIAIYTRCGFFEKAEKIMEDMWNHKIAPD 149

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
            ++    +  YGQ G  ++A    D M RLG         SMI AYGK  L +KAL L  
Sbjct: 150 RDNWLKQMNTYGQQGKIEEAEHIMDTMERLGMHLGVVGYNSMITAYGKAGLYEKALRLFE 209

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP---FKIQVS------ 507
           ++++ G EP   TY+ ++   GR   + +A      +  LG  P    F   +S      
Sbjct: 210 KMKEAGLEPDEVTYSCMIGACGRAGKLRDALDYFQAMKRLGIMPASSNFNTLISLYGKAR 269

Query: 508 --------LCDM------------------YARAGIEKKALQALGFLEAKKEQMGPDDFE 541
                   L DM                  Y RAG  KK +Q L  L         + + 
Sbjct: 270 NVVGIVRVLADMKNFGCTPDSQTLDAVVRAYERAGQTKKVVQVLSLLREAGWVEDTESYG 329

Query: 542 RIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
            +++  L     ++A  V   M   G A  E +  +LI +
Sbjct: 330 TLLHVYLKCNLQKEALSVFSAMRKAGMAPKEYMCRSLICA 369



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 65/306 (21%), Positives = 133/306 (43%)

Query: 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318
           ++ K ++ + ++  +E+AE I+  M   G+   +V    ++  Y KAG  ++A   FE +
Sbjct: 152 NWLKQMNTYGQQGKIEEAEHIMDTMERLGMHLGVVGYNSMITAYGKAGLYEKALRLFEKM 211

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
           +  G +PD+  Y+ MI A   AG+ +  +     M   GI  +   +  L+  + +  +V
Sbjct: 212 KEAGLEPDEVTYSCMIGACGRAGKLRDALDYFQAMKRLGIMPASSNFNTLISLYGKARNV 271

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
            G  ++   M+     P  ++   +V AY +AG   +       +   G   D     ++
Sbjct: 272 VGIVRVLADMKNFGCTPDSQTLDAVVRAYERAGQTKKVVQVLSLLREAGWVEDTESYGTL 331

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           +  Y K NL  +AL++   + K G  P       L+       +  +A  +   +   G 
Sbjct: 332 LHVYLKCNLQKEALSVFSAMRKAGMAPKEYMCRSLICACKDAGMFEDATNVFRDMQSAGV 391

Query: 499 APPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQR 558
            P  +   ++ +++   G  K+A +    L +   ++    +  IIN  +  G  ++A R
Sbjct: 392 VPSLETSCTMINVHGLKGDVKQAEELFRSLRSSVSKLDIIAYNVIINVYMRYGMHEEAFR 451

Query: 559 VHGLME 564
           ++ LME
Sbjct: 452 IYKLME 457



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/358 (21%), Positives = 148/358 (41%), Gaps = 40/358 (11%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++ LI + +K +  + A R  + M E G+ P  +T ++++ +Y K G ++ A+ AF  + 
Sbjct: 49  FNTLIMSASKADYADYATRAFQMMLEKGVQPTRLTYSMMMLLYQKNGKVEDAEVAFSHML 108

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G Q     Y++MI  Y   G  +    +++ M    I    + +L  + ++ Q G + 
Sbjct: 109 QSGIQV-VAAYSAMIAIYTRCGFFEKAEKIMEDMWNHKIAPDRDNWLKQMNTYGQQGKIE 167

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  I + M        +     ++ AYG+AG  ++A   F+ M   G +PD+   + MI
Sbjct: 168 EAEHIMDTMERLGMHLGVVGYNSMITAYGKAGLYEKALRLFEKMKEAGLEPDEVTYSCMI 227

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            A G+   L  AL+    +++ G  P  + +  L+   G+ + +    ++L  +   G  
Sbjct: 228 GACGRAGKLRDALDYFQAMKRLGIMPASSNFNTLISLYGKARNVVGIVRVLADMKNFGCT 287

Query: 500 PPFK------------------IQV-----------------SLCDMYARAGIEKKALQA 524
           P  +                  +QV                 +L  +Y +  ++K+AL  
Sbjct: 288 PDSQTLDAVVRAYERAGQTKKVVQVLSLLREAGWVEDTESYGTLLHVYLKCNLQKEALSV 347

Query: 525 LGFLEAKKEQMGPDDF--ERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
             F   +K  M P ++    +I      G  +DA  V   M++ G   S      +I+
Sbjct: 348 --FSAMRKAGMAPKEYMCRSLICACKDAGMFEDATNVFRDMQSAGVVPSLETSCTMIN 403



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 120/284 (42%), Gaps = 2/284 (0%)

Query: 263 LIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG 322
           LI A       EDA  + + M   G+VP + TS  +++++   G++ +A+E F SLRS  
Sbjct: 366 LICACKDAGMFEDATNVFRDMQSAGVVPSLETSCTMINVHGLKGDVKQAEELFRSLRSSV 425

Query: 323 FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMIT-SGIERSEEIYLALLRSFAQCGDVRGA 381
            + D   YN +I  Y+  G  +    +  +M    G+      Y ++LR   +C     A
Sbjct: 426 SKLDIIAYNVIINVYMRYGMHEEAFRIYKLMEEEDGLLPDSYTYHSMLRMCQKCNLQTQA 485

Query: 382 GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441
            +I   +R  + +     C  ++    +    ++    F  MI +G  P+      MI  
Sbjct: 486 EEIYWRLRNSDVELDEVMCNCVLNTCARFLPLEEVHKIFQEMIDVGCIPNTITFNVMIDL 545

Query: 442 YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
           YGK  +LD+A +     ++ G      T++ L++  G+ Q     E  L ++   G    
Sbjct: 546 YGKSGMLDRARDASKLAQQLGV-ADKITFSTLINSYGKKQDFRNMEATLWEMQNAGHGGS 604

Query: 502 FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIIN 545
            +    + D Y +AG   K    +  +E    QM    +  +IN
Sbjct: 605 LEAYNCVLDAYGKAGHLDKLEDVIARMEKSGLQMDLASYNILIN 648



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 96/202 (47%), Gaps = 1/202 (0%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           LE+  +I ++M + G +P+ +T  V++ +Y K+G LDRA++A +  +  G   DK  +++
Sbjct: 517 LEEVHKIFQEMIDVGCIPNTITFNVMIDLYGKSGMLDRARDASKLAQQLGV-ADKITFST 575

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I +Y      +   + +  M  +G   S E Y  +L ++ + G +     +   M    
Sbjct: 576 LINSYGKKQDFRNMEATLWEMQNAGHGGSLEAYNCVLDAYGKAGHLDKLEDVIARMEKSG 635

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
            Q  L S  +L+  YG+     +  + F  M   G  PD     +MI  YG  +  DKA+
Sbjct: 636 LQMDLASYNILINIYGRHTKIAEMEALFHKMQEEGFIPDRWTYNTMIRTYGYADYPDKAV 695

Query: 453 NLLLELEKDGFEPGPATYTVLV 474
           +    ++  G  P   TY +LV
Sbjct: 696 DTFKMMQDSGIMPDRVTYVMLV 717



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 69/311 (22%), Positives = 123/311 (39%), Gaps = 41/311 (13%)

Query: 214 WKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEE---SFQTNVRDYSKLIDAHAKE 270
           W   + P R +W+  ++   +Q      + AE ++           V  Y+ +I A+ K 
Sbjct: 142 WNHKIAPDRDNWLKQMNTYGQQGK---IEEAEHIMDTMERLGMHLGVVGYNSMITAYGKA 198

Query: 271 NCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR----------- 319
              E A R+ +KM E G+ PD VT + ++    +AG L  A + F++++           
Sbjct: 199 GLYEKALRLFEKMKEAGLEPDEVTYSCMIGACGRAGKLRDALDYFQAMKRLGIMPASSNF 258

Query: 320 ------------------------SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMIT 355
                                   + G  PD +  ++++ AY  AGQ K  + ++ ++  
Sbjct: 259 NTLISLYGKARNVVGIVRVLADMKNFGCTPDSQTLDAVVRAYERAGQTKKVVQVLSLLRE 318

Query: 356 SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ 415
           +G     E Y  LL  + +C   + A  + + MR     P    C  L+ A   AG  + 
Sbjct: 319 AGWVEDTESYGTLLHVYLKCNLQKEALSVFSAMRKAGMAPKEYMCRSLICACKDAGMFED 378

Query: 416 ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
           A + F  M   G  P    + +MI  +G K  + +A  L   L     +     Y V+++
Sbjct: 379 ATNVFRDMQSAGVVPSLETSCTMINVHGLKGDVKQAEELFRSLRSSVSKLDIIAYNVIIN 438

Query: 476 WLGRLQLINEA 486
              R  +  EA
Sbjct: 439 VYMRYGMHEEA 449



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 63/119 (52%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ ++DA+ K   L+  E ++ +M ++G+  D+ +  +L+++Y +   +   +  F  ++
Sbjct: 608 YNCVLDAYGKAGHLDKLEDVIARMEKSGLQMDLASYNILINIYGRHTKIAEMEALFHKMQ 667

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
             GF PD+  YN+MI  Y  A  P   +    MM  SGI      Y+ L+ +F + G++
Sbjct: 668 EEGFIPDRWTYNTMIRTYGYADYPDKAVDTFKMMQDSGIMPDRVTYVMLVAAFEKAGNL 726



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 47/95 (49%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + +   Q ++  Y+ LI+ + +   + + E +  KM E G +PD  T   ++  Y  A  
Sbjct: 631 MEKSGLQMDLASYNILINIYGRHTKIAEMEALFHKMQEEGFIPDRWTYNTMIRTYGYADY 690

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
            D+A + F+ ++  G  PD+  Y  ++ A+  AG 
Sbjct: 691 PDKAVDTFKMMQDSGIMPDRVTYVMLVAAFEKAGN 725



 Score = 39.7 bits (91), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + EE F  +   Y+ +I  +   +  + A    K M ++GI+PD VT  +LV  + KAGN
Sbjct: 666 MQEEGFIPDRWTYNTMIRTYGYADYPDKAVDTFKMMQDSGIMPDRVTYVMLVAAFEKAGN 725

Query: 308 L 308
           L
Sbjct: 726 L 726


>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
 gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
          Length = 816

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 149/359 (41%), Gaps = 15/359 (4%)

Query: 230 DRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIV 289
           DR+ E   Q++ K+ E  +S +S+      Y  LID  AK   L DA  + +K+  +G+ 
Sbjct: 302 DRIDEA-VQMFEKMNERNVSPDSWS-----YGILIDGLAKAGKLNDARNLFQKLLHSGVT 355

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL 349
           P  V  T L+H    A + D A+E F  +   G  P    YN MI A    G  +    L
Sbjct: 356 PSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDL 415

Query: 350 VDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409
           +  MI  G       Y  ++    +   V  A  + N M      P   S   ++    Q
Sbjct: 416 IKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQ 475

Query: 410 AGDPDQA--RSNFDYMIRL-------GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
               DQA  R   D   RL       GH PD    +++I+       +D A +LL ++ K
Sbjct: 476 QSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVK 535

Query: 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKK 520
              +P   T   L+  L +   I EA ++L  +   G++P      +L   + RAG  ++
Sbjct: 536 RQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTER 595

Query: 521 ALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
           A + L  + A+        +  +++GL     L +A  V   M++ G A +     ALI
Sbjct: 596 ARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALI 654



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 77/333 (23%), Positives = 144/333 (43%), Gaps = 9/333 (2%)

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           +R Y+ +I    + + +++A ++ +KMNE  + PD  +  +L+   +KAG L+ A+  F+
Sbjct: 288 LRGYNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQ 347

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
            L   G  P    Y S+I     A        L   M   G   S   Y  ++ +  + G
Sbjct: 348 KLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRG 407

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR--- 433
            +  A  +   M  +   P + +   +++   ++   ++A   F+ M RLG  P+ R   
Sbjct: 408 MLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHN 467

Query: 434 ------CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
                 C  S I    ++  LD+A  LL  +  DG  P   TY+ L+  L  +  +++A 
Sbjct: 468 TIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDAR 527

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
            LL  + +    P    Q +L     +AG  K+A + L  + +  +      +  +++G 
Sbjct: 528 HLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGH 587

Query: 548 LAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
              G  + A+ +   M A+G A +     AL+S
Sbjct: 588 CRAGQTERARELLSDMVARGLAPNVVTYTALVS 620



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 93/210 (44%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           ++++    +V  YS LI        ++DA  +L+ M +    P +VT   L+H   KAG 
Sbjct: 498 MTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGR 557

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A+E  +++ S G  PD   YN+++  +  AGQ +    L+  M+  G+  +   Y A
Sbjct: 558 IKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTA 617

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    +   +  A  +   M+     P L + T L+  +  AG  D     F  M+  G
Sbjct: 618 LVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAG 677

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
             PD     ++ A   K     +AL +L E
Sbjct: 678 ISPDHVVYGTLAAELCKSGRSARALEILRE 707



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 126/304 (41%), Gaps = 44/304 (14%)

Query: 264 IDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGF 323
           ID   +   L++A R+LK+M ++G VPD+VT + L+        +D A+   E +     
Sbjct: 479 IDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQC 538

Query: 324 QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQ 383
           +P     N++I     AG+ K    ++D M++SG                          
Sbjct: 539 KPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQ------------------------- 573

Query: 384 ITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYG 443
                      P + +   LV  + +AG  ++AR     M+  G  P+     ++++   
Sbjct: 574 ----------SPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLC 623

Query: 444 KKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFK 503
           K N L +A  +  +++  G  P   TYT L+        ++   +L G++   G +P   
Sbjct: 624 KANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHV 683

Query: 504 IQVSLCDMYARAGIEKKALQAL--GFLEAKKEQMGPDDFERIINGLL-------AGGFLQ 554
           +  +L     ++G   +AL+ L  G    + E  G + +   ++GLL       A GF++
Sbjct: 684 VYGTLAAELCKSGRSARALEILREGRESLRSEAWGDEVYRFAVDGLLEAGKMEMALGFVR 743

Query: 555 DAQR 558
           D  R
Sbjct: 744 DMVR 747



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 72/351 (20%), Positives = 141/351 (40%), Gaps = 15/351 (4%)

Query: 228 LLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNEN 286
           L+D L + Q T+   K+ ++++    F  +   ++ ++    K   +++AE ++ +M   
Sbjct: 50  LIDSLSKRQETEAVKKMVQVMVDRGCFPDSF-TFTTILCGLCKAGKMDEAELVMDEMRSR 108

Query: 287 GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLG 346
            I P   TS+ L H     G+++RA +  E +       +   YN +++A   A +    
Sbjct: 109 MIPPYFATSSFLAHELCLRGSMERAFQLLEIMPV----ANSSAYNIVVVALCKAARVDDA 164

Query: 347 MSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA 406
           + L   M    I  +     ++L      G +  A Q   + R    +P L +  +L+E 
Sbjct: 165 LELARTMSEKRIPLAAGSLDSVLVGLMDSGRIDEALQ---VYRENRREPCLVTLNVLLEG 221

Query: 407 YGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG 466
           +   G  D+AR     M      PD+    +++    K   +++A+ L  + E       
Sbjct: 222 FCSRGQVDKARELLRAMPDEECAPDEVSYCTVLDGLCKAGRVEEAVRLFGDRELPSSSSS 281

Query: 467 PAT------YTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKK 520
            ++      Y +++  L +   I+EA Q+  K++E   +P       L D  A+AG    
Sbjct: 282 SSSPPSLRGYNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLND 341

Query: 521 ALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAAS 571
           A      L           +  +I+GL       DA+ +   M  +G   S
Sbjct: 342 ARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPS 392


>gi|224136626|ref|XP_002322376.1| predicted protein [Populus trichocarpa]
 gi|222869372|gb|EEF06503.1| predicted protein [Populus trichocarpa]
          Length = 715

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 140/319 (43%), Gaps = 5/319 (1%)

Query: 214 WKELLQPSRIDWINLLDRLREQN-TQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC 272
           WK    P+      L+D L ++  T+  F++   ++  + ++ NV  Y+ +I  + KE+ 
Sbjct: 332 WK----PNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDDYKPNVHTYTSMIHGYCKEDK 387

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           L  AE +L +M E G+VP+  T T L+  +SKAGN ++A E  + +   GF  +   YN+
Sbjct: 388 LNRAEMLLSRMKEQGLVPNTKTYTCLIDGHSKAGNFEKAYELMDLMGKEGFSANIFTYNA 447

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
            I +    G+      L+      G++     Y  L+    +  D R A    + M    
Sbjct: 448 FIDSLCKKGRFLEACKLLKKGFRLGLQADTVTYTILISELCRRADTREALVFFSKMFKAG 507

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
            QP + +   L+ A+ +    +++   F   + LG  P      SMI  Y +   +  AL
Sbjct: 508 VQPDMHTYNTLIAAFSRQRRMEESEKLFAEAVGLGLVPTKETYTSMICGYCRDRNVSLAL 567

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
                +   G  P   TY  L+  L +   ++EA QL   + + G +P    +++L   Y
Sbjct: 568 KFFNRMSDHGCTPDSLTYGALISGLCKESKLDEACQLYEAMVDKGLSPCEVTRLTLAYEY 627

Query: 513 ARAGIEKKALQALGFLEAK 531
            +      A+  L  L+ K
Sbjct: 628 CKQDDSATAMVILERLDKK 646



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 74/353 (20%), Positives = 145/353 (41%), Gaps = 2/353 (0%)

Query: 208 SPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAH 267
           + L +E   ++  S  +W     + R    + Y   A   +  E+F+        ++   
Sbjct: 113 ASLASEAGSMVALSFFNWAIGFPKFR-YFMRFYIVCATSFIGNENFERAHEVMDCMVRVF 171

Query: 268 AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK 327
           A+    ++A  ++ +M  +G+V  + T   +  +  + G +  A+  F+ +R  G  PD 
Sbjct: 172 AEIGKFQEAVNMVIEMENHGLVLTVRTLNCVTGVAGEMGLVGYAENVFDEMRVRGVCPDS 231

Query: 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNI 387
             Y  M +AY   G+       +  M+  G          ++ +F + G         + 
Sbjct: 232 VSYKLMAIAYCRMGRISDTDRWLKDMVRRGFVVDNATCTLMISTFCEKGFASRVFWYFDK 291

Query: 388 MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447
                 +P L + T L+    + G   QA    + M++ G KP+     ++I    KK  
Sbjct: 292 WVELGLKPNLINFTSLINGLCKRGSIKQAFEMLEEMVKKGWKPNVYTHTALIDGLCKKGW 351

Query: 448 LDKALNLLLELEK-DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQV 506
            +KA  L L+L + D ++P   TYT ++    +   +N AE LL ++ E G  P  K   
Sbjct: 352 TEKAFRLFLKLVRSDDYKPNVHTYTSMIHGYCKEDKLNRAEMLLSRMKEQGLVPNTKTYT 411

Query: 507 SLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
            L D +++AG  +KA + +  +  +        +   I+ L   G   +A ++
Sbjct: 412 CLIDGHSKAGNFEKAYELMDLMGKEGFSANIFTYNAFIDSLCKKGRFLEACKL 464


>gi|413916119|gb|AFW56051.1| hypothetical protein ZEAMMB73_517553 [Zea mays]
          Length = 663

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 130/286 (45%), Gaps = 6/286 (2%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELV---LSEESFQTNVRDYSKLIDAHAKENCLE 274
           L P  I + +LL+   +   Q   K A L+   L        V  Y+ LID + +   LE
Sbjct: 368 LLPDVITYNSLLNGYCKAGNQ---KEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLE 424

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           +A R+ ++M E G +PD+ T T+L+       +L   +E F+ + S G +PD   YN+ I
Sbjct: 425 EARRLKEEMVEQGCLPDVYTYTILMKGSHNVCSLAMTREFFDEMLSKGLRPDCFAYNTRI 484

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
            A +  G       L ++++  GI      Y  L+    + G+++ A ++   M     Q
Sbjct: 485 CAEITLGDISKSFQLREVIMLEGISSDTVTYNILIDGLCKTGNLKDAEELMMQMISNGLQ 544

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P   + T L+ A+ + G   +AR  F+ MI  G  P       +I AY ++  L  A   
Sbjct: 545 PDCITYTCLIHAHCERGFLREARKFFNDMISDGLPPSAVTYTVIIHAYCRRGNLYSAYGW 604

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
             ++ ++G EP   TY VL+  L R+     A +   ++ E G  P
Sbjct: 605 FRKMLEEGVEPNEITYNVLIHALCRMGRTQLAYRHFYEMLERGLVP 650



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 115/262 (43%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI        ++  + +  +M   GI+P +VT   ++H   ++G ++ A+  F  +R
Sbjct: 305 YNPLITGLLARGFVKKVDDLQLEMENEGIMPTVVTYNAMIHGLLQSGQIEAAQAKFVEMR 364

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G  PD   YNS++  Y  AG  K  + L   +  +G+  +   Y  L+  + + GD+ 
Sbjct: 365 AMGLLPDVITYNSLLNGYCKAGNQKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLE 424

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++   M  +   P + + T+L++           R  FD M+  G +PD     + I
Sbjct: 425 EARRLKEEMVEQGCLPDVYTYTILMKGSHNVCSLAMTREFFDEMLSKGLRPDCFAYNTRI 484

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            A      + K+  L   +  +G      TY +L+D L +   + +AE+L+ ++   G  
Sbjct: 485 CAEITLGDISKSFQLREVIMLEGISSDTVTYNILIDGLCKTGNLKDAEELMMQMISNGLQ 544

Query: 500 PPFKIQVSLCDMYARAGIEKKA 521
           P       L   +   G  ++A
Sbjct: 545 PDCITYTCLIHAHCERGFLREA 566



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 1/165 (0%)

Query: 241 FKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
           F++ E+++ E    ++   Y+ LID   K   L+DAE ++ +M  NG+ PD +T T L+H
Sbjct: 497 FQLREVIMLE-GISSDTVTYNILIDGLCKTGNLKDAEELMMQMISNGLQPDCITYTCLIH 555

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
            + + G L  A++ F  + S G  P    Y  +I AY   G           M+  G+E 
Sbjct: 556 AHCERGFLREARKFFNDMISDGLPPSAVTYTVIIHAYCRRGNLYSAYGWFRKMLEEGVEP 615

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVE 405
           +E  Y  L+ +  + G  + A +    M      P   + TLL++
Sbjct: 616 NEITYNVLIHALCRMGRTQLAYRHFYEMLERGLVPNKYTYTLLID 660



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 110/291 (37%), Gaps = 35/291 (12%)

Query: 245 ELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK 304
           +L +  E     V  Y+ +I    +   +E A+    +M   G++PD++T   L++ Y K
Sbjct: 325 QLEMENEGIMPTVVTYNAMIHGLLQSGQIEAAQAKFVEMRAMGLLPDVITYNSLLNGYCK 384

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
           AGN   A   F  LR  G  P    YN +I  Y   G  +    L + M+  G       
Sbjct: 385 AGNQKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVYT 444

Query: 365 Y------------LALLRSF----------AQC-------------GDVRGAGQITNIMR 389
           Y            LA+ R F            C             GD+  + Q+  ++ 
Sbjct: 445 YTILMKGSHNVCSLAMTREFFDEMLSKGLRPDCFAYNTRICAEITLGDISKSFQLREVIM 504

Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD 449
           +E       +  +L++   + G+   A      MI  G +PD      +I A+ ++  L 
Sbjct: 505 LEGISSDTVTYNILIDGLCKTGNLKDAEELMMQMISNGLQPDCITYTCLIHAHCERGFLR 564

Query: 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
           +A     ++  DG  P   TYTV++    R   +  A     K+ E G  P
Sbjct: 565 EARKFFNDMISDGLPPSAVTYTVIIHAYCRRGNLYSAYGWFRKMLEEGVEP 615



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 109/255 (42%), Gaps = 3/255 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           ++      +V+D +K++         +D   +  +M + GI P IVT   L+  +SK G 
Sbjct: 187 MASHGVAPDVKDCNKVLRVLRDAARWDDMSAVHAEMLQLGIEPSIVTYNTLLDSFSKEGR 246

Query: 308 LDRAKEAFESLRSHGFQ--PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
            D+     + + + G    P+   YN +I      G  +    LV+ M  S  + S   Y
Sbjct: 247 KDKIDMLLKEMEARGSSCLPNDVTYNVVIAGLARKGYLEEAAELVEEMRLSK-KASSFTY 305

Query: 366 LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
             L+      G V+    +   M  E   PT+ +   ++    Q+G  + A++ F  M  
Sbjct: 306 NPLITGLLARGFVKKVDDLQLEMENEGIMPTVVTYNAMIHGLLQSGQIEAAQAKFVEMRA 365

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
           +G  PD     S++  Y K     +AL L  +L + G  P   TY +L+D   RL  + E
Sbjct: 366 MGLLPDVITYNSLLNGYCKAGNQKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEE 425

Query: 486 AEQLLGKISELGEAP 500
           A +L  ++ E G  P
Sbjct: 426 ARRLKEEMVEQGCLP 440



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 116/266 (43%), Gaps = 21/266 (7%)

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDM-MITSGIERSEEIYLALLRS 371
            AF  + SHG  PD K  N ++    +A +    MS V   M+  GIE S   Y  LL S
Sbjct: 182 SAFREMASHGVAPDVKDCNKVLRVLRDAARWD-DMSAVHAEMLQLGIEPSIVTYNTLLDS 240

Query: 372 FAQCGDVRGAGQITNI-MRIEEFQPTLESC-------TLLVEAYGQAGDPDQARSNFDYM 423
           F++       G+   I M ++E +    SC        +++    + G  ++A    + M
Sbjct: 241 FSK------EGRKDKIDMLLKEMEARGSSCLPNDVTYNVVIAGLARKGYLEEAAELVEEM 294

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483
            RL  K        +I     +  + K  +L LE+E +G  P   TY  ++  L +   I
Sbjct: 295 -RLSKKASSFTYNPLITGLLARGFVKKVDDLQLEMENEGIMPTVVTYNAMIHGLLQSGQI 353

Query: 484 NEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFE 541
             A+    ++  +G  P      SL + Y +AG +K+AL   G  + ++  + P    + 
Sbjct: 354 EAAQAKFVEMRAMGLLPDVITYNSLLNGYCKAGNQKEALLLFG--DLRRAGLAPTVLTYN 411

Query: 542 RIINGLLAGGFLQDAQRVHGLMEAQG 567
            +I+G    G L++A+R+   M  QG
Sbjct: 412 ILIDGYCRLGDLEEARRLKEEMVEQG 437



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 134/335 (40%), Gaps = 7/335 (2%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENG--IVPDIVTSTVLVHMYSKAGNLDR 310
            + ++  Y+ L+D+ +KE   +  + +LK+M   G   +P+ VT  V++   ++ G L+ 
Sbjct: 227 IEPSIVTYNTLLDSFSKEGRKDKIDMLLKEMEARGSSCLPNDVTYNVVIAGLARKGYLEE 286

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A E  E +R    +     YN +I   +  G  K    L   M   GI  +   Y A++ 
Sbjct: 287 AAELVEEMRLSK-KASSFTYNPLITGLLARGFVKKVDDLQLEMENEGIMPTVVTYNAMIH 345

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
              Q G +  A      MR     P + +   L+  Y +AG+  +A   F  + R G  P
Sbjct: 346 GLLQSGQIEAAQAKFVEMRAMGLLPDVITYNSLLNGYCKAGNQKEALLLFGDLRRAGLAP 405

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
                  +I  Y +   L++A  L  E+ + G  P   TYT+L+     +  +    +  
Sbjct: 406 TVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVYTYTILMKGSHNVCSLAMTREFF 465

Query: 491 GKISELGEAP-PFKIQVSLCDMYARAGIEKK-ALQALGFLEAKKEQMGPDDFERIINGLL 548
            ++   G  P  F     +C       I K   L+ +  LE          +  +I+GL 
Sbjct: 466 DEMLSKGLRPDCFAYNTRICAEITLGDISKSFQLREVIMLEGISSDT--VTYNILIDGLC 523

Query: 549 AGGFLQDAQRVHGLMEAQGFAASERLKVALISSQT 583
             G L+DA+ +   M + G          LI +  
Sbjct: 524 KTGNLKDAEELMMQMISNGLQPDCITYTCLIHAHC 558


>gi|242091740|ref|XP_002436360.1| hypothetical protein SORBIDRAFT_10g001070 [Sorghum bicolor]
 gi|241914583|gb|EER87727.1| hypothetical protein SORBIDRAFT_10g001070 [Sorghum bicolor]
          Length = 999

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 137/309 (44%), Gaps = 1/309 (0%)

Query: 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320
           S LI   A+E   ++A+ I  ++ E G  PD      LV  Y +   L++A+E FES  S
Sbjct: 612 SLLISKLAREGSTDEAKFIYDQLTELGFKPDHTAIATLVVQYGQGKQLEQAQELFESA-S 670

Query: 321 HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRG 380
             F     VYN+M+ A+   G+ +    L   M+  G  R       L+    + G +  
Sbjct: 671 ALFPEGANVYNAMVDAFCKCGKTEDAYHLFMEMVDQGSNRDAVTVSILVTHLTKHGKLHS 730

Query: 381 AGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIA 440
           A  I + M       ++++  L++  +G+ G  D+A   F     LG   D++   +M++
Sbjct: 731 AISIYDRMISSGTSQSMQTFNLMISVFGKGGKLDKAVEMFAAAQELGLPIDEKMYTNMLS 790

Query: 441 AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
            YGK     +A  +   +++DG  PG  ++  +++      L +EA+    ++ + G AP
Sbjct: 791 LYGKAGRHQEASLMFKRMKEDGIRPGKISFNSMINAYATSGLCSEAKSTFHEMQDCGHAP 850

Query: 501 PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVH 560
                ++L   Y  A +  +A +A+  +           F  +I   L  G + +AQR++
Sbjct: 851 DSFSYLALIRAYTEAKLYMEAEEAIRMMLNSSTTPSCPHFSHLIFAFLKEGQIGEAQRIY 910

Query: 561 GLMEAQGFA 569
             M+    A
Sbjct: 911 NQMKEASVA 919



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 137/309 (44%), Gaps = 7/309 (2%)

Query: 221 SRIDWINLLDRLREQ----NTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           +R+ +  +   LREQ      + +F   +L L    ++ +V  Y+ L+  + K   ++ A
Sbjct: 137 TRLTFREMCVVLREQRGWRQARDFFAWMKLQLC---YEPSVVAYTILLRLYGKVGKIKLA 193

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
           E    +M + G  PD V    L+ MY++ G        + ++R     P   VYN MI +
Sbjct: 194 EETFLEMLQVGCEPDAVACGTLLCMYARWGRHKDMMLFYSAVRRRDLVPPVSVYNYMISS 253

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
                     + +   M  +G   ++  Y  ++ SF +   +  A  +   MR   F P 
Sbjct: 254 LQKQKLHGKVIHVWKQMREAGALPNQFTYTVVISSFVKEDLLEKAMDVFGEMRQCRFVPE 313

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
             + +LL+ A  + G  +QA   F+ M   G  P +   AS++A Y K     KAL+LL 
Sbjct: 314 EATYSLLISASSRHGKGEQALRLFEEMKAQGIVPSNYTCASLLALYYKNEDYSKALSLLS 373

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
           E+E     P    Y +L+   G+L L  EAEQ   KI + G     +  V++  ++  AG
Sbjct: 374 EMENSKVIPDEVIYGILIRIYGKLGLYEEAEQTFEKIEKAGLLSDEQTYVAMAQVHLNAG 433

Query: 517 IEKKALQAL 525
              +AL+ L
Sbjct: 434 DYDRALEVL 442



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 63/281 (22%), Positives = 120/281 (42%), Gaps = 3/281 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ ++DA  K    EDA  +  +M + G   D VT ++LV   +K G L  A   ++ + 
Sbjct: 680 YNAMVDAFCKCGKTEDAYHLFMEMVDQGSNRDAVTVSILVTHLTKHGKLHSAISIYDRMI 739

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           S G     + +N MI  +   G+    + +       G+   E++Y  +L  + + G  +
Sbjct: 740 SSGTSQSMQTFNLMISVFGKGGKLDKAVEMFAAAQELGLPIDEKMYTNMLSLYGKAGRHQ 799

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  +   M+ +  +P   S   ++ AY  +G   +A+S F  M   GH PD     ++I
Sbjct: 800 EASLMFKRMKEDGIRPGKISFNSMINAYATSGLCSEAKSTFHEMQDCGHAPDSFSYLALI 859

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            AY +  L  +A   +  +      P    ++ L+    +   I EA+++  ++ E   A
Sbjct: 860 RAYTEAKLYMEAEEAIRMMLNSSTTPSCPHFSHLIFAFLKEGQIGEAQRIYNQMKEASVA 919

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF 540
           P      ++  +Y   G+     + +   E  +  + PD F
Sbjct: 920 PDLACCRTMMRVYMEHGLMD---EGITLYETTRGSLKPDSF 957



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 112/255 (43%), Gaps = 1/255 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS LI A ++    E A R+ ++M   GIVP   T   L+ +Y K  +  +A      + 
Sbjct: 317 YSLLISASSRHGKGEQALRLFEEMKAQGIVPSNYTCASLLALYYKNEDYSKALSLLSEME 376

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           +    PD+ +Y  +I  Y   G  +      + +  +G+   E+ Y+A+ +     GD  
Sbjct: 377 NSKVIPDEVIYGILIRIYGKLGLYEEAEQTFEKIEKAGLLSDEQTYVAMAQVHLNAGDYD 436

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++   M +   +P+  S + ++  Y    D   A   F  + + G  PD  C   ++
Sbjct: 437 RALEVLESMMMRNVKPSHFSYSAILRCYVAKEDIVAAEDTFRALSQHG-LPDVFCCNDLL 495

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             Y +   L+KA  L+L++ +D F         ++ +  +  +IN+AE++   I    + 
Sbjct: 496 RLYMRLGHLEKARALVLKMREDDFRLDEDLSMTVMKFYCKSNMINDAEKIFKDIQRNNKT 555

Query: 500 PPFKIQVSLCDMYAR 514
                 + L +MYAR
Sbjct: 556 VKIPTMLLLIEMYAR 570



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/290 (20%), Positives = 120/290 (41%), Gaps = 40/290 (13%)

Query: 296 TVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMIT 355
           ++L+   ++ G+ D AK  ++ L   GF+PD     ++++ Y   GQ K           
Sbjct: 612 SLLISKLAREGSTDEAKFIYDQLTELGFKPDHTAIATLVVQY---GQGK----------- 657

Query: 356 SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ 415
             +E+++E++ +    F +  +V  A                     +V+A+ + G  + 
Sbjct: 658 -QLEQAQELFESASALFPEGANVYNA---------------------MVDAFCKCGKTED 695

Query: 416 ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
           A   F  M+  G   D    + ++    K   L  A+++   +   G      T+ +++ 
Sbjct: 696 AYHLFMEMVDQGSNRDAVTVSILVTHLTKHGKLHSAISIYDRMISSGTSQSMQTFNLMIS 755

Query: 476 WLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQM 535
             G+   +++A ++     ELG     K+  ++  +Y +AG  ++A  +L F   K++ +
Sbjct: 756 VFGKGGKLDKAVEMFAAAQELGLPIDEKMYTNMLSLYGKAGRHQEA--SLMFKRMKEDGI 813

Query: 536 GPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQT 583
            P    F  +IN     G   +A+     M+  G A      +ALI + T
Sbjct: 814 RPGKISFNSMINAYATSGLCSEAKSTFHEMQDCGHAPDSFSYLALIRAYT 863



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 65/294 (22%), Positives = 122/294 (41%), Gaps = 45/294 (15%)

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL 349
           P +V  T+L+ +Y K G +  A+E F  +   G +PD     +++  Y   G+ K     
Sbjct: 172 PSVVAYTILLRLYGKVGKIKLAEETFLEMLQVGCEPDAVACGTLLCMYARWGRHK----- 226

Query: 350 VDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409
            DMM+          Y A+ R                     +  P +     ++ +  +
Sbjct: 227 -DMML---------FYSAVRR--------------------RDLVPPVSVYNYMISSLQK 256

Query: 410 AGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPAT 469
                +    +  M   G  P+      +I+++ K++LL+KA+++  E+ +  F P  AT
Sbjct: 257 QKLHGKVIHVWKQMREAGALPNQFTYTVVISSFVKEDLLEKAMDVFGEMRQCRFVPEEAT 316

Query: 470 YTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLE 529
           Y++L+    R     +A +L  ++   G  P      SL  +Y +     KAL  L  +E
Sbjct: 317 YSLLISASSRHGKGEQALRLFEEMKAQGIVPSNYTCASLLALYYKNEDYSKALSLLSEME 376

Query: 530 AKKEQMGPDDFERIINGLLAG-----GFLQDAQRVHGLMEAQGFAASERLKVAL 578
             K  + PD+   +I G+L       G  ++A++    +E  G  + E+  VA+
Sbjct: 377 NSK--VIPDE---VIYGILIRIYGKLGLYEEAEQTFEKIEKAGLLSDEQTYVAM 425



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/258 (20%), Positives = 109/258 (42%), Gaps = 27/258 (10%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS ++  +  +  +  AE   + ++++G+ PD+     L+ +Y + G+L++A+     +R
Sbjct: 457 YSAILRCYVAKEDIVAAEDTFRALSQHGL-PDVFCCNDLLRLYMRLGHLEKARALVLKMR 515

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE------------EIYL- 366
              F+ D+ +  +++  Y      K  M      I   I+R+             E+Y  
Sbjct: 516 EDDFRLDEDLSMTVMKFYC-----KSNMINDAEKIFKDIQRNNKTVKIPTMLLLIEMYAR 570

Query: 367 ----ALLRSFAQCGDVRG---AGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
                +LR  +    + G   +     +  + +    L S +LL+    + G  D+A+  
Sbjct: 571 NKSSVILREHSSSKALDGTDSSAASVALKSLLDMPGGLSSVSLLISKLAREGSTDEAKFI 630

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
           +D +  LG KPD    A+++  YG+   L++A   L E     F  G   Y  +VD   +
Sbjct: 631 YDQLTELGFKPDHTAIATLVVQYGQGKQLEQAQE-LFESASALFPEGANVYNAMVDAFCK 689

Query: 480 LQLINEAEQLLGKISELG 497
                +A  L  ++ + G
Sbjct: 690 CGKTEDAYHLFMEMVDQG 707



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 64/140 (45%), Gaps = 5/140 (3%)

Query: 220 PSRIDWINLLDRLREQNTQLYFKVAELV--LSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           P    ++ L+    E   +LY +  E +  +   S   +   +S LI A  KE  + +A+
Sbjct: 850 PDSFSYLALIRAYTE--AKLYMEAEEAIRMMLNSSTTPSCPHFSHLIFAFLKEGQIGEAQ 907

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
           RI  +M E  + PD+     ++ +Y + G +D     +E+ R    +PD  + ++    Y
Sbjct: 908 RIYNQMKEASVAPDLACCRTMMRVYMEHGLMDEGITLYETTRG-SLKPDSFILSAAFHLY 966

Query: 338 VNAGQPKLGMSLVDMMITSG 357
            +AG+      ++D +  SG
Sbjct: 967 DHAGRESEAQDVLDAISVSG 986


>gi|356547408|ref|XP_003542104.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Glycine max]
          Length = 631

 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 135/556 (24%), Positives = 220/556 (39%), Gaps = 58/556 (10%)

Query: 51  DMEKARKKEKMKGFLQSDKVKEMSRFAGEIGIRGDMLRELRFKWA---REEMEESEFYEG 107
           D EKA +  K+K  +    V+E+ +   E+ ++        FKWA   R    +S  Y  
Sbjct: 71  DAEKALEVLKLK--VDPRLVREILKIDVEVSVKIQF-----FKWAGKRRNFEHDSTTYMA 123

Query: 108 LERLRKE--------ANAQEMGEKAEGKAAAECAEVEEKPKVITLPKRHGKIKYKIYGLD 159
           L R   E           Q+M + +   A AE +E+        +  R   + Y++ G  
Sbjct: 124 LIRCLDEHRMFGEVWKTIQDMVKGSCAMAPAELSEIVRILGKAKMVNRALSVFYQVKGRK 183

Query: 160 LSDPKWTEVA-----------EKIHE-RGEMILPEEPKPITGKCKLITDKILSLEKEEDP 207
                 T  +           EK+HE   EM       P T     +      L +++  
Sbjct: 184 CRPTASTYNSIILMLMQEGHHEKVHELYNEMCSEVHCFPDTVTYSALISAFAKLNRDDSA 243

Query: 208 SPLLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQT----------- 255
             L  E KE  LQP+   +  L+         +YFKV ++   EE+              
Sbjct: 244 IRLFDEMKENGLQPTAKIYTTLMG--------IYFKVGKV---EEALGLVKEMRARRCLL 292

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
            V  Y++LI    K   +EDA    K M ++G  PD+V    L+++  ++ +L  A + F
Sbjct: 293 TVFTYTELIRGLGKSGRVEDAYMTYKNMLKDGCKPDVVLMNNLINILGRSNHLRDAIKLF 352

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQP-KLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
           + ++     P+   YN++I +   A  P     S  + M   GI  S   Y  L+  + +
Sbjct: 353 DEMKLLNCAPNVVTYNTIIKSLFEAKAPLSEASSWFERMKKDGIVPSSFTYSILIDGYCK 412

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
              V  A  +   M  + F P   +   L+   G A   D A   F  +         R 
Sbjct: 413 TNRVEKALLLLEEMDEKGFPPCPAAYCSLINTLGVAKRYDVANELFQELKENCGCSSARV 472

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
            A MI  +GK   L++A+NL  E++K G  P    Y  L+  + R + ++EA  L   + 
Sbjct: 473 YAVMIKHFGKCGRLNEAINLFNEMKKLGCTPDVYAYNALMTGMVRAERMDEAFSLFRTME 532

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGF 552
           E G  P       + +  AR G  K AL+   F + K   + PD   F  I+  L   G 
Sbjct: 533 ENGCTPDINSHNIILNGLARTGGPKGALEM--FTKMKNSTIKPDVVSFNTILGCLSRAGL 590

Query: 553 LQDAQRVHGLMEAQGF 568
            ++A ++   M ++GF
Sbjct: 591 FEEAAKLMQEMSSKGF 606



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 95/221 (42%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS LID + K N +E A  +L++M+E G  P       L++    A   D A E F+ L+
Sbjct: 403 YSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINTLGVAKRYDVANELFQELK 462

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
            +      +VY  MI  +   G+    ++L + M   G       Y AL+    +   + 
Sbjct: 463 ENCGCSSARVYAVMIKHFGKCGRLNEAINLFNEMKKLGCTPDVYAYNALMTGMVRAERMD 522

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  +   M      P + S  +++    + G P  A   F  M     KPD     +++
Sbjct: 523 EAFSLFRTMEENGCTPDINSHNIILNGLARTGGPKGALEMFTKMKNSTIKPDVVSFNTIL 582

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
               +  L ++A  L+ E+   GF+    TY+ +++ +G++
Sbjct: 583 GCLSRAGLFEEAAKLMQEMSSKGFQYDLITYSSILEAVGKV 623



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 72/171 (42%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L E    ++ R Y+ +I    K   L +A  +  +M + G  PD+     L+    +A  
Sbjct: 461 LKENCGCSSARVYAVMIKHFGKCGRLNEAINLFNEMKKLGCTPDVYAYNALMTGMVRAER 520

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D A   F ++  +G  PD   +N ++      G PK  + +   M  S I+     +  
Sbjct: 521 MDEAFSLFRTMEENGCTPDINSHNIILNGLARTGGPKGALEMFTKMKNSTIKPDVVSFNT 580

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418
           +L   ++ G    A ++   M  + FQ  L + + ++EA G+  D     S
Sbjct: 581 ILGCLSRAGLFEEAAKLMQEMSSKGFQYDLITYSSILEAVGKVDDCKMVES 631


>gi|229914885|gb|ACQ90610.1| putative PPR repeat protein [Eutrema halophilum]
          Length = 1023

 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 121/283 (42%), Gaps = 37/283 (13%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
            V  Y+ +ID   KE  +E A  + ++M   G++PD VT   ++  Y K G LD     F
Sbjct: 132 TVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFF 191

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E ++S   +PD   YN++I  +   G+   G+     M  SG+                 
Sbjct: 192 EEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGL----------------- 234

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
                             +P + S + LV+A+ +     QA   +  M RLG  P++   
Sbjct: 235 ------------------KPNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTY 276

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            S++ AY K   L  A  L  E+ + G E    TYT L+D L  ++ I EAE+L GK+  
Sbjct: 277 TSLVDAYCKIGNLSDAFRLADEMSQVGVEWNVVTYTALIDGLCDVERIKEAEELFGKMVT 336

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
            G  P      +L   + +A    +AL+ L   E K   + PD
Sbjct: 337 AGVIPNLASYTALIHGFVKAKNMDRALELLD--EMKGRGIKPD 377



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/256 (21%), Positives = 117/256 (45%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +ID + K   L+D     ++M      PD++T   L++ + K G L +  E F  ++
Sbjct: 171 YNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMK 230

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +P+   Y++++ A+      +  +     M   G+  +E  Y +L+ ++ + G++ 
Sbjct: 231 QSGLKPNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLS 290

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++ + M     +  + + T L++         +A   F  M+  G  P+     ++I
Sbjct: 291 DAFRLADEMSQVGVEWNVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALI 350

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             + K   +D+AL LL E++  G +P    Y   +  L  L+ I  A+ ++ ++ E G  
Sbjct: 351 HGFVKAKNMDRALELLDEMKGRGIKPDLLLYGTFIWSLCGLEKIEAAKVVMNEMQEKGIK 410

Query: 500 PPFKIQVSLCDMYARA 515
               I  +L D Y ++
Sbjct: 411 ANTFIYTTLMDAYFKS 426



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 69/296 (23%), Positives = 127/296 (42%), Gaps = 9/296 (3%)

Query: 185 KPITGKCKLITDKILSLEKEEDPSPLLAEWK-ELLQPSRIDWINLLDRL----REQNTQL 239
           KP      ++ D +      E  S L  E K   L P  + + +++D      R  +T  
Sbjct: 130 KPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVY 189

Query: 240 YFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLV 299
           +F+     +   S + +V  Y+ LI+   K   L       ++M ++G+ P++V+ + LV
Sbjct: 190 FFEE----MKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVVSYSTLV 245

Query: 300 HMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
             + K   + +A + +  +R  G  P++  Y S++ AY   G       L D M   G+E
Sbjct: 246 DAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQVGVE 305

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
            +   Y AL+        ++ A ++   M      P L S T L+  + +A + D+A   
Sbjct: 306 WNVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRALEL 365

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
            D M   G KPD     + I +      ++ A  ++ E+++ G +     YT L+D
Sbjct: 366 LDEMKGRGIKPDLLLYGTFIWSLCGLEKIEAAKVVMNEMQEKGIKANTFIYTTLMD 421



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 135/311 (43%), Gaps = 11/311 (3%)

Query: 218 LQPSRIDWINLLDR-----LREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC 272
           L+P+ + +  L+D      + +Q  + Y  +  L L       N   Y+ L+DA+ K   
Sbjct: 234 LKPNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVP-----NEHTYTSLVDAYCKIGN 288

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           L DA R+  +M++ G+  ++VT T L+        +  A+E F  + + G  P+   Y +
Sbjct: 289 LSDAFRLADEMSQVGVEWNVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTA 348

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I  +V A      + L+D M   GI+    +Y   + S      +  A  + N M+ + 
Sbjct: 349 LIHGFVKAKNMDRALELLDEMKGRGIKPDLLLYGTFIWSLCGLEKIEAAKVVMNEMQEKG 408

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
            +      T L++AY ++ +P +     + M+ L  +        +I    K  L+ KA+
Sbjct: 409 IKANTFIYTTLMDAYFKSENPSEGLHLLEEMLELDIEVTAVTFCVLIDGLCKNKLVSKAI 468

Query: 453 NLLLELEKD-GFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
           +    +  D G +   A YT ++D L +   +  A  L  ++++ G  P      SL D 
Sbjct: 469 DYFGRISNDFGLQANAAIYTAMIDGLCKEDQVEAATTLFEQMAQKGLVPDRTAYTSLIDG 528

Query: 512 YARAGIEKKAL 522
             + G   +AL
Sbjct: 529 KLKQGNVVQAL 539



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 68/287 (23%), Positives = 138/287 (48%), Gaps = 13/287 (4%)

Query: 218 LQPSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L P+   + +L+D   +  N    F++A+  +S+   + NV  Y+ LID       +++A
Sbjct: 269 LVPNEHTYTSLVDAYCKIGNLSDAFRLAD-EMSQVGVEWNVVTYTALIDGLCDVERIKEA 327

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
           E +  KM   G++P++ + T L+H + KA N+DRA E  + ++  G +PD  +Y + I +
Sbjct: 328 EELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRALELLDEMKGRGIKPDLLLYGTFIWS 387

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
                + +    +++ M   GI+ +  IY  L+ ++ +  +      +   M   + + T
Sbjct: 388 LCGLEKIEAAKVVMNEMQEKGIKANTFIYTTLMDAYFKSENPSEGLHLLEEMLELDIEVT 447

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRL----GHKPDDRCTASMIAAYGKKNLLDKAL 452
             +  +L++   +     +A    DY  R+    G + +     +MI    K++ ++ A 
Sbjct: 448 AVTFCVLIDGLCKNKLVSKA---IDYFGRISNDFGLQANAAIYTAMIDGLCKEDQVEAAT 504

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLIN--EAEQLLGKISELG 497
            L  ++ + G  P    YT L+D  G+L+  N  +A  L  K++E+G
Sbjct: 505 TLFEQMAQKGLVPDRTAYTSLID--GKLKQGNVVQALALRDKMAEIG 549



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 50/238 (21%), Positives = 107/238 (44%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           +  L     +E+  E+A +   KM    + P   +   L+H +++ G  D  K  F+ + 
Sbjct: 66  FDALFSVLIEEDMFEEALQCFSKMKRCRVFPKTRSCNGLLHKFARLGKTDGMKRFFKDMI 125

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +P    YN MI      G  +    L + M   G+      Y +++  + + G + 
Sbjct: 126 GAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLD 185

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
                   M+    +P + +   L+  + + G   +    F  M + G KP+    ++++
Sbjct: 186 DTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVVSYSTLV 245

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
            A+ K++++ +AL   +++ + G  P   TYT LVD   ++  +++A +L  ++S++G
Sbjct: 246 DAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQVG 303



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 64/307 (20%), Positives = 122/307 (39%), Gaps = 33/307 (10%)

Query: 283 MNENGIVPDIVTSTVLVH------MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
           MN NG    I +  ++ H      MY  A  + R     E + S     D  V++ ++ +
Sbjct: 1   MNRNGFKHTIESYCIVAHILFCARMYYDANRILR-----EMVLSKAELKDCDVFD-VLWS 54

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
             N   P  G  + D + +  IE  E+++   L+ F++            + R   F P 
Sbjct: 55  TRNVCVP--GFGVFDALFSVLIE--EDMFEEALQCFSK------------MKRCRVF-PK 97

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
             SC  L+  + + G  D  +  F  MI  G KP       MI    K+  ++ A  L  
Sbjct: 98  TRSCNGLLHKFARLGKTDGMKRFFKDMIGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFE 157

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
           E++  G  P   TY  ++D  G++  +++      ++  +   P      +L + + + G
Sbjct: 158 EMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFG 217

Query: 517 IEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERL 574
              K L+   F E K+  + P+   +  +++       +Q A + +  M   G   +E  
Sbjct: 218 KLPKGLEF--FREMKQSGLKPNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHT 275

Query: 575 KVALISS 581
             +L+ +
Sbjct: 276 YTSLVDA 282


>gi|225430029|ref|XP_002281569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g25630-like [Vitis vinifera]
          Length = 635

 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 151/323 (46%), Gaps = 10/323 (3%)

Query: 242 KVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM 301
           K+ EL+  +E+ + N+R Y+ L+ A   +  +  A  ++ KM  +G+ PD VT   +   
Sbjct: 198 KLLELMSQDENVRPNLRTYNVLVRAWCNKKNIMKAWNVVYKMVASGLQPDAVTYNTIATA 257

Query: 302 YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS 361
           Y++ G   +A+     +++   QP+++    +I  Y   G+ K  +  V  M   G++ +
Sbjct: 258 YAQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGYCKEGKIKEALQFVYRMKDLGLQPN 317

Query: 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEF--QPTLESCTLLVEAYGQAGDPDQARSN 419
             ++ +L++ F    D  G  ++  +M  EEF  +P + + + ++ A+  AG  D+ R  
Sbjct: 318 LVVFNSLIKGFIDAVDRDGVNEVLTLM--EEFGVKPDVITFSTIMNAWSAAGFMDKCREI 375

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD-WL- 477
           FD M++   +PD    + +   Y +    +KA  +L  + K GF P    +T +++ W  
Sbjct: 376 FDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMIKSGFHPNVVIFTTIINGWCS 435

Query: 478 -GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG 536
            GR++    A ++  K+ E G AP  K   +L   Y  A    K+ + L  +E    Q  
Sbjct: 436 AGRMEY---AIKIFEKMCECGIAPNLKTFETLIWGYGEARQPWKSEEVLQIMEEFNVQPE 492

Query: 537 PDDFERIINGLLAGGFLQDAQRV 559
                 +     A G  ++A R+
Sbjct: 493 KTTLLLVAEAWRATGLKKEANRI 515



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/326 (20%), Positives = 144/326 (44%), Gaps = 9/326 (2%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+ A   +   +    I+ ++ ENG+ PD +    +++ +S++GN+  A + F  ++
Sbjct: 110 YTTLLAALTIQKHFDSIHSIISQVEENGMEPDSIFFNAVINAFSESGNMQEAMKYFWKMK 169

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS-GIERSEEIYLALLRSFAQCGDV 378
             G +P    +N++I  Y  AG+P+    L+++M     +  +   Y  L+R++    ++
Sbjct: 170 ESGSKPTTSTFNTLIKGYGIAGEPEESQKLLELMSQDENVRPNLRTYNVLVRAWCNKKNI 229

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             A  +   M     QP   +   +  AY Q G+  QA      M     +P++R    +
Sbjct: 230 MKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAEGIILEMQNSNVQPNERTCCII 289

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE--AEQLLGKISEL 496
           I  Y K+  + +AL  +  ++  G +P    +  L+   G +  ++     ++L  + E 
Sbjct: 290 IGGYCKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIK--GFIDAVDRDGVNEVLTLMEEF 347

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQ 554
           G  P      ++ + ++ AG   K  +   F +  K ++ PD   +  +  G +  G  +
Sbjct: 348 GVKPDVITFSTIMNAWSAAGFMDKCREI--FDDMVKARIQPDAHVYSILAKGYVRAGEPE 405

Query: 555 DAQRVHGLMEAQGFAASERLKVALIS 580
            A+ +   M   GF  +  +   +I+
Sbjct: 406 KAEEILNAMIKSGFHPNVVIFTTIIN 431



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/314 (21%), Positives = 139/314 (44%), Gaps = 2/314 (0%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
            LS+ S +T VR  +KL++   ++   ++ + IL  + E G  P +VT T L+   +   
Sbjct: 63  CLSKTSCRT-VRSRTKLMNIMIEKGRPQEVQSILDSIIEGGHKPSLVTYTTLLAALTIQK 121

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           + D        +  +G +PD   +N++I A+  +G  +  M     M  SG + +   + 
Sbjct: 122 HFDSIHSIISQVEENGMEPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFN 181

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEE-FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
            L++ +   G+   + ++  +M  +E  +P L +  +LV A+    +  +A +    M+ 
Sbjct: 182 TLIKGYGIAGEPEESQKLLELMSQDENVRPNLRTYNVLVRAWCNKKNIMKAWNVVYKMVA 241

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
            G +PD     ++  AY +     +A  ++LE++    +P   T  +++    +   I E
Sbjct: 242 SGLQPDAVTYNTIATAYAQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGYCKEGKIKE 301

Query: 486 AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIIN 545
           A Q + ++ +LG  P   +  SL   +  A       + L  +E    +     F  I+N
Sbjct: 302 ALQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNEVLTLMEEFGVKPDVITFSTIMN 361

Query: 546 GLLAGGFLQDAQRV 559
              A GF+   + +
Sbjct: 362 AWSAAGFMDKCREI 375



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/342 (20%), Positives = 158/342 (46%), Gaps = 14/342 (4%)

Query: 195 TDKILSL-EKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESF 253
           + K+L L  ++E+  P L  +  L++     W N  + ++  N      V ++V S    
Sbjct: 196 SQKLLELMSQDENVRPNLRTYNVLVRA----WCNKKNIMKAWNV-----VYKMVAS--GL 244

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           Q +   Y+ +  A+A+      AE I+ +M  + + P+  T  +++  Y K G +  A +
Sbjct: 245 QPDAVTYNTIATAYAQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGYCKEGKIKEALQ 304

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
               ++  G QP+  V+NS+I  +++A        ++ +M   G++     +  ++ +++
Sbjct: 305 FVYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNEVLTLMEEFGVKPDVITFSTIMNAWS 364

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
             G +    +I + M     QP     ++L + Y +AG+P++A    + MI+ G  P+  
Sbjct: 365 AAGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMIKSGFHPNVV 424

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
              ++I  +     ++ A+ +  ++ + G  P   T+  L+   G  +   ++E++L  +
Sbjct: 425 IFTTIINGWCSAGRMEYAIKIFEKMCECGIAPNLKTFETLIWGYGEARQPWKSEEVLQIM 484

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQM 535
            E    P     + + + +   G++K+A + L  +  K E+M
Sbjct: 485 EEFNVQPEKTTLLLVAEAWRATGLKKEANRILSAV--KNEEM 524


>gi|212274745|ref|NP_001130291.1| uncharacterized protein LOC100191385 [Zea mays]
 gi|194688762|gb|ACF78465.1| unknown [Zea mays]
 gi|223949231|gb|ACN28699.1| unknown [Zea mays]
 gi|414874010|tpg|DAA52567.1| TPA: salt-inducible protein [Zea mays]
          Length = 716

 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 115/245 (46%), Gaps = 4/245 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS ++D +A+    E+   +  +   +G  PD V   VL  M+ +AG+ D  +  F+ +R
Sbjct: 261 YSAVLDVYAQLGMKEEVLALFDRARGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFKEMR 320

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +P+  VYN+++ A    G+P L  +L + MI  G+E +     AL + + +    R
Sbjct: 321 EVGIKPNIFVYNALLEALGKTGKPGLARNLFEEMIDQGVEPNARTLTALAKIYGRARWGR 380

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM----IRLGHKPDDRCT 435
            A Q+ + MR  +       C  L+      G   +A   F+ M     R   KPD    
Sbjct: 381 DALQLWDKMRELKLPADSILCNTLLSMCADVGLVAEAEQLFNEMKDPECRDVPKPDKWSY 440

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            +MI  YG     D AL L  E+ K G EP   +YT+++  LG+ + I +A ++L    E
Sbjct: 441 TAMINIYGSNGDTDSALQLFAEMLKGGIEPNIMSYTIVIQCLGKARRIQQAVEVLESGLE 500

Query: 496 LGEAP 500
            G  P
Sbjct: 501 KGLKP 505



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 137/316 (43%), Gaps = 17/316 (5%)

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS-HGFQPDKKVYNSMI 334
           AER+   M + G+  D +T + L+    +     +A E FE + +  G  PD+  Y++++
Sbjct: 206 AERLALDMLDAGVPLDNITYSTLITAARRCRQFAKAVEWFERMYAADGVLPDEVTYSAVL 265

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
             Y   G  +  ++L D    SG +     +  L + F + GD  G   +   MR    +
Sbjct: 266 DVYAQLGMKEEVLALFDRARGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFKEMREVGIK 325

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P +     L+EA G+ G P  AR+ F+ MI  G +P+ R   ++   YG+      AL L
Sbjct: 326 PNIFVYNALLEALGKTGKPGLARNLFEEMIDQGVEPNARTLTALAKIYGRARWGRDALQL 385

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI--SELGEAP-PFKIQ-VSLCD 510
             ++ +            L+     + L+ EAEQL  ++   E  + P P K    ++ +
Sbjct: 386 WDKMRELKLPADSILCNTLLSMCADVGLVAEAEQLFNEMKDPECRDVPKPDKWSYTAMIN 445

Query: 511 MYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEA----- 565
           +Y   G    ALQ   F E  K  + P+    I++  +    L  A+R+   +E      
Sbjct: 446 IYGSNGDTDSALQL--FAEMLKGGIEPN----IMSYTIVIQCLGKARRIQQAVEVLESGL 499

Query: 566 -QGFAASERLKVALIS 580
            +G    +RL   L+S
Sbjct: 500 EKGLKPDDRLCGCLLS 515



 Score = 43.5 bits (101), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 73/171 (42%), Gaps = 23/171 (13%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +I+ +      + A ++  +M + GI P+I++ T+++    KA  + +A E  ES  
Sbjct: 440 YTAMINIYGSNGDTDSALQLFAEMLKGGIEPNIMSYTIVIQCLGKARRIQQAVEVLESGL 499

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +PD ++   ++     +   ++ M L      S +E+  +  + L+R       V 
Sbjct: 500 EKGLKPDDRLCGCLLSVIALSSGEEMEMVL------SSLEKVNQNLVKLIR-------VL 546

Query: 380 GAGQITNIMRIEEFQPTLES---------CTLLVEAYGQAGDPDQ-ARSNF 420
           G  Q+      EE +  L S         C  L++     G P Q AR  F
Sbjct: 547 GDAQVGGDDITEELKSVLNSAAPEVRRPYCNCLIDVCRNHGFPPQRAREVF 597


>gi|449530359|ref|XP_004172163.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Cucumis sativus]
          Length = 831

 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 144/319 (45%), Gaps = 6/319 (1%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           Q N+  ++ LI  H       +  ++ +++     VPDIVT   L+ ++ + G       
Sbjct: 428 QPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSG 487

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            F+ ++  GF P++  +N++I AY   G     M++   M+ +G+      Y A+L + A
Sbjct: 488 VFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALA 547

Query: 374 QCGDVRGAGQITNIMRIEEFQPT-LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
           + G    + ++   M+    +P  L  C+LL  AY    + ++  +  + +     +P  
Sbjct: 548 RGGLWEQSEKVLAEMKDGRCKPNELTYCSLL-HAYANGKEVERMSALAEEIYSGIIEPQA 606

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               +++  Y K +LL +     LEL + GF P   T   +V   GR +++++  ++L  
Sbjct: 607 VLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNF 666

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAG 550
           I + G  P      SL  MY+R    +K+   L  + AK   M PD   F  +I      
Sbjct: 667 IKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKG--MKPDIISFNTVIFAYCRN 724

Query: 551 GFLQDAQRVHGLMEAQGFA 569
           G +++A R+   M+  G A
Sbjct: 725 GRMKEASRIFAEMKDFGLA 743



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 134/292 (45%), Gaps = 5/292 (1%)

Query: 238 QLYFKVAELV--LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTS 295
            LY + AE+   +    F  +   Y+ L+D + K     +A  +LK+M  +G  P IVT 
Sbjct: 305 SLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTY 364

Query: 296 TVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMIT 355
             L+  Y++ G LD A E    +   G +PD   Y +++  +   G+    M + + M  
Sbjct: 365 NSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRV 424

Query: 356 SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ 415
           +G + +   + AL++     G+     ++   ++I E  P + +   L+  +GQ G   +
Sbjct: 425 AGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSE 484

Query: 416 ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
               F  M R G  P+     ++I+AY +    D+A+ +   +   G  P  +TY  ++ 
Sbjct: 485 VSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLA 544

Query: 476 WLGRLQLINEAEQLLGKISELGEAPPFKIQ-VSLCDMYARAGIEKKALQALG 526
            L R  L  ++E++L ++ + G   P ++   SL   YA  G E + + AL 
Sbjct: 545 ALARGGLWEQSEKVLAEMKD-GRCKPNELTYCSLLHAYAN-GKEVERMSALA 594



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/323 (22%), Positives = 137/323 (42%), Gaps = 5/323 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG- 306
           L  +    ++  Y+ LI A+A      +A  + KK+ E G  P ++T  V++++Y K G 
Sbjct: 211 LRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILNVYGKMGM 270

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
              +     +S++S G  PD   YN++I +       +    + + M  +G    +  Y 
Sbjct: 271 PWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYN 330

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           ALL  + +    R A ++   M    F P++ +   L+ AY + G  D+A      M++ 
Sbjct: 331 ALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKK 390

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G KPD     ++++ + K    D A+ +  E+   G +P   T+  L+   G      E 
Sbjct: 391 GIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEM 450

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP--DDFERII 544
            ++  +I      P      +L  ++ + G++ +      F E K+    P  D F  +I
Sbjct: 451 MKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSGV--FKEMKRAGFVPERDTFNTLI 508

Query: 545 NGLLAGGFLQDAQRVHGLMEAQG 567
           +     GF   A  ++  M   G
Sbjct: 509 SAYSRCGFFDQAMAIYRRMLDAG 531



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 106/246 (43%), Gaps = 10/246 (4%)

Query: 239 LYFKVAELVLSEESFQTNVRDYSKL---------IDAHAKENCLEDAERILKKMNENGIV 289
           +++K  EL L    F  N  D++ +         I    KE     A  +L  +  +G+ 
Sbjct: 158 VFYKKNELALCVFYFVRNREDFASILSNSVVAVIISVLGKEGRASFAASLLHDLRNDGVH 217

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMS- 348
            DI   T L+  Y+  G    A   F+ L   G +P    YN ++  Y   G P   ++ 
Sbjct: 218 IDIYAYTSLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILNVYGKMGMPWSKIAG 277

Query: 349 LVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYG 408
           LVD M +SG+      Y  L+ S  +      A ++   M+   F P   +   L++ YG
Sbjct: 278 LVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYG 337

Query: 409 QAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPA 468
           ++  P +A      M   G  P      S+I+AY +  LLD+A+ L  ++ K G +P   
Sbjct: 338 KSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVF 397

Query: 469 TYTVLV 474
           TYT L+
Sbjct: 398 TYTTLL 403



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 104/237 (43%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  L+ A+A    +E    + +++    I P  V    LV +YSK+  L   + AF  LR
Sbjct: 574 YCSLLHAYANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELR 633

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             GF PD    N+M+  Y           +++ +  SG   S   Y +L+  +++     
Sbjct: 634 EQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFE 693

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            +  I   +  +  +P + S   ++ AY + G   +A   F  M   G  PD     + I
Sbjct: 694 KSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFI 753

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
           A+Y   ++  +A++++  + K+  +P   TY  L+DW  +L   +EA   +  +  L
Sbjct: 754 ASYASDSMFIEAIDVVKYMIKNECKPNQNTYNSLIDWFCKLNRRDEANSFISNLRNL 810



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 109/260 (41%), Gaps = 2/260 (0%)

Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338
           + K+M   G VP+  T   L+  YS+ G  D+A   +  +   G  PD   YN+++ A  
Sbjct: 488 VFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALA 547

Query: 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398
             G  +    ++  M     + +E  Y +LL ++A   +V     +   +     +P   
Sbjct: 548 RGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVERMSALAEEIYSGIIEPQAV 607

Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
               LV  Y ++    +    F  +   G  PD     +M++ YG++ ++ K   +L  +
Sbjct: 608 LLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFI 667

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
           +  GF P   TY  L+    R +   ++E +L +I   G  P      ++   Y R G  
Sbjct: 668 KDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRM 727

Query: 519 KKALQALGFLEAKKEQMGPD 538
           K+A +   F E K   + PD
Sbjct: 728 KEASRI--FAEMKDFGLAPD 745



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 109/242 (45%), Gaps = 11/242 (4%)

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
           R +E F S+ S+       V   +I      G+     SL+  +   G+      Y +L+
Sbjct: 174 RNREDFASILSNS------VVAVIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLI 227

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDP-DQARSNFDYMIRLGH 428
            ++A  G  R A  +   +  E  +PTL +  +++  YG+ G P  +     D M   G 
Sbjct: 228 TAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGV 287

Query: 429 KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQ 488
            PD     ++I++  + +L ++A  +  E++  GF P   TY  L+D  G+ +   EA +
Sbjct: 288 APDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAME 347

Query: 489 LLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLL 548
           +L ++   G AP      SL   YAR G+  +A++     +  K+ + PD F      LL
Sbjct: 348 VLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKS--QMVKKGIKPDVF--TYTTLL 403

Query: 549 AG 550
           +G
Sbjct: 404 SG 405



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/279 (19%), Positives = 124/279 (44%), Gaps = 5/279 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++ LI A+++    + A  I ++M + G+ PD+ T   ++   ++ G  +++++    ++
Sbjct: 504 FNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMK 563

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
               +P++  Y S++ AY N G+    MS +   I SGI   + + L  L       D+ 
Sbjct: 564 DGRCKPNELTYCSLLHAYAN-GKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLL 622

Query: 380 GAGQITNI-MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
              +   + +R + F P + +   +V  YG+     +     +++   G  P      S+
Sbjct: 623 TETERAFLELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSL 682

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           +  Y +    +K+ ++L E+   G +P   ++  ++    R   + EA ++  ++ + G 
Sbjct: 683 MYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGL 742

Query: 499 APPFKIQVSLCDMYARAGIEKKALQALGFL---EAKKEQ 534
           AP      +    YA   +  +A+  + ++   E K  Q
Sbjct: 743 APDVITYNTFIASYASDSMFIEAIDVVKYMIKNECKPNQ 781



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/175 (20%), Positives = 77/175 (44%)

Query: 244 AELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS 303
           A L L E+ F  ++   + ++  + +   +     IL  + ++G  P + T   L++MYS
Sbjct: 628 AFLELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYS 687

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363
           +  + +++++    + + G +PD   +N++I AY   G+ K    +   M   G+     
Sbjct: 688 RTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVI 747

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418
            Y   + S+A       A  +   M   E +P   +   L++ + +    D+A S
Sbjct: 748 TYNTFIASYASDSMFIEAIDVVKYMIKNECKPNQNTYNSLIDWFCKLNRRDEANS 802


>gi|297826989|ref|XP_002881377.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327216|gb|EFH57636.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 589

 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 92/391 (23%), Positives = 173/391 (44%), Gaps = 32/391 (8%)

Query: 194 ITDKILS-LEKEEDPSPLLAEWKELLQPSRIDWINLLD-----RLREQNTQLYFKVAELV 247
           I  KILS ++KE DP  + A+    L  +   W +L++     RL ++   +   V E +
Sbjct: 101 IAQKILSFIQKETDPDKV-ADVLGALPSTHASWDDLINVSVQLRLNKKWDSIIL-VCEWI 158

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L   SFQ +V  ++ LIDA+ ++   ++AE +  ++ E+  VP   T T+L+  Y  AG 
Sbjct: 159 LRRSSFQPDVICFNLLIDAYGQKFRFKEAESLYVQLLESRCVPTEDTYTLLIKAYCMAGL 218

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN-AGQPKLGMSLVDMMITSGIERSEEIYL 366
           +++A+     +++H   P   VYN+ I   +   G  +  + +   M     + + E Y 
Sbjct: 219 IEKAEAVLIEMQNHHVSPSVTVYNAYIEGLMKRKGNTEQAIDVFQRMKRDRCKPTTETYN 278

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYG------------------ 408
            ++  + +      + ++   MR  + +P + + T LV A+                   
Sbjct: 279 LMINLYGKASKSYMSWKLFCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQED 338

Query: 409 -----QAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGF 463
                +AG P  A   F  M  +G +PD      M+ AYG+  L   A  +  E+++ G 
Sbjct: 339 GHIDSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGI 398

Query: 464 EPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
            P   ++ +L+    R + + + E ++ ++SE G  P   +  S+ ++Y R G   K  +
Sbjct: 399 APTMKSHMLLLSAYSRARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEK 458

Query: 524 ALGFLEAKKEQMGPDDFERIINGLLAGGFLQ 554
            L  +E          +  +IN     GFL+
Sbjct: 459 ILAEMENGPCTADISTYNILINIYGKAGFLE 489



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 119/265 (44%), Gaps = 29/265 (10%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  Y+ L++A A+E   E AE I +++ E+G            H+ S+AG    A E F
Sbjct: 308 NICTYTALVNAFAREGLCEKAEEIFEQLQEDG------------HIDSRAGYPYGAAEIF 355

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             ++  G +PD+  YN M+ AY  AG      ++ + M   GI  + + ++ LL ++++ 
Sbjct: 356 SLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSRA 415

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR-LGHKPDDRC 434
            DV     I   M     +P       ++  YG+ G        F  M + L    +  C
Sbjct: 416 RDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLG-------QFTKMEKILAEMENGPC 468

Query: 435 TAS------MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQ 488
           TA       +I  YGK   L++   L +EL++  F+P   T+T  +    R +L  +  +
Sbjct: 469 TADISTYNILINIYGKAGFLERIEELFVELKERNFKPDVVTWTSRIGAYSRKKLYVKCLE 528

Query: 489 LLGKISELGEAP---PFKIQVSLCD 510
           +  ++ + G AP     K+ +S C 
Sbjct: 529 IFEEMIDSGCAPDGGTAKVLLSACS 553


>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 667

 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/338 (23%), Positives = 146/338 (43%), Gaps = 2/338 (0%)

Query: 243 VAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMY 302
           VA +V  E   Q NV  Y+ +++   K      A  +L+KM+E  +  D+ T + ++   
Sbjct: 158 VARMV--ENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSL 215

Query: 303 SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE 362
            + G +D A   F+ + + G +     YNS++     AG+   G+ L+  M +  I  + 
Sbjct: 216 CRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNV 275

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
             +  L+  F + G ++ A ++   M  +   P   +   L++ Y       +A +  D 
Sbjct: 276 ITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDL 335

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
           M+R    PD     S+I  Y K   +D+ + L  ++ K G      TY++LV    +   
Sbjct: 336 MVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGK 395

Query: 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFER 542
           +  AE+L  ++  LG  P       L D     G  +KAL+    L+  K  +    +  
Sbjct: 396 LEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTI 455

Query: 543 IINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
           II G+  GG ++DA  +   +  +G   +      +IS
Sbjct: 456 IIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMIS 493



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/348 (20%), Positives = 156/348 (44%), Gaps = 19/348 (5%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +  +  ++++  Y+ L+    K     D  ++LK M    I+P+++T  VL+ ++ K G 
Sbjct: 231 METKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGK 290

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L  A E ++ + + G  P+   YNS++  Y    +     +++D+M+ +        + +
Sbjct: 291 LQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTS 350

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L++ + +   V    ++   +          + ++LV+ + Q+G  + A   F  M+ LG
Sbjct: 351 LIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLG 410

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD      ++        L+KAL +  +L+K         YT++++ + +   + +A 
Sbjct: 411 VLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAW 470

Query: 488 QLLGKISELGEAP---PFKIQVS-LCDMYARAGIEKKALQALGFLEAKKEQMG--PDD-- 539
            L   +   G  P    + + +S LC        +K +L     L  K E+ G  P+D  
Sbjct: 471 NLFCSLPCKGVKPNVMTYTVMISGLC--------KKGSLSEANILLRKMEEDGNEPNDCT 522

Query: 540 FERIINGLLAGGFLQDAQRVHGLMEAQGF---AASERLKVALISSQTF 584
           +  +I   L  G L  + ++   M++ GF   A+S ++ + ++SS  +
Sbjct: 523 YNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLSSAVW 570



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/266 (19%), Positives = 125/266 (46%), Gaps = 12/266 (4%)

Query: 218 LQPSRIDWINLLD------RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKEN 271
           + P+ I + +L+D      RL E N  L   V        +   ++  ++ LI  + K  
Sbjct: 306 ISPNTITYNSLMDGYCMQNRLSEANNMLDLMV------RNNCSPDIVTFTSLIKGYCKVK 359

Query: 272 CLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYN 331
            +++  ++ +K+++ G+V + VT ++LV  + ++G L+ A+E F+ + S G  PD   Y 
Sbjct: 360 RVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYG 419

Query: 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391
            ++    + G+ +  + + + +  S +     +Y  ++    + G V  A  +   +  +
Sbjct: 420 ILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCK 479

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
             +P + + T+++    + G   +A      M   G++P+D    ++I A+ +   L  +
Sbjct: 480 GVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNEPNDCTYNTLIRAHLRDGDLTAS 539

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWL 477
             L+ E++  GF    ++  +++D L
Sbjct: 540 AKLIEEMKSCGFSADASSIKMVIDML 565



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/335 (20%), Positives = 128/335 (38%), Gaps = 18/335 (5%)

Query: 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318
           D+S+     A            KKM  NGI  +I T  ++++ + +      A      +
Sbjct: 67  DFSRFFSGVASTKQFNLVLDFCKKMELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKV 126

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
              G++PD   +N++I       +    + LV  M+ +G + +   Y +++    + GD 
Sbjct: 127 MKLGYEPDTTTFNTLINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDT 186

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             A  +   M     +  + + + ++++  + G  D A S F  M   G K       S+
Sbjct: 187 SLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSL 246

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           +    K    +  + LL ++      P   T+ VL+D   +   + EA +L  ++   G 
Sbjct: 247 VGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGI 306

Query: 499 APPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDA 556
           +P      SL D Y       +A   L  +   +    PD   F  +I G      + + 
Sbjct: 307 SPNTITYNSLMDGYCMQNRLSEANNMLDLMV--RNNCSPDIVTFTSLIKGYCKVKRVDEG 364

Query: 557 QRV------HGLME--------AQGFAASERLKVA 577
            ++       GL+          QGF  S +L++A
Sbjct: 365 MKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIA 399



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 77/182 (42%), Gaps = 8/182 (4%)

Query: 237 TQLYFKVAELVLSEESFQ--------TNVRDYSKLIDAHAKENCLEDAERILKKMNENGI 288
            Q + +  +L ++EE FQ         +V  Y  L+D       LE A  I + + ++ +
Sbjct: 387 VQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKM 446

Query: 289 VPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMS 348
             DIV  T+++    K G ++ A   F SL   G +P+   Y  MI      G       
Sbjct: 447 NLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANI 506

Query: 349 LVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYG 408
           L+  M   G E ++  Y  L+R+  + GD+  + ++   M+   F     S  ++++   
Sbjct: 507 LLRKMEEDGNEPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLS 566

Query: 409 QA 410
            A
Sbjct: 567 SA 568


>gi|296081889|emb|CBI20894.3| unnamed protein product [Vitis vinifera]
          Length = 608

 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 151/323 (46%), Gaps = 10/323 (3%)

Query: 242 KVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM 301
           K+ EL+  +E+ + N+R Y+ L+ A   +  +  A  ++ KM  +G+ PD VT   +   
Sbjct: 198 KLLELMSQDENVRPNLRTYNVLVRAWCNKKNIMKAWNVVYKMVASGLQPDAVTYNTIATA 257

Query: 302 YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS 361
           Y++ G   +A+     +++   QP+++    +I  Y   G+ K  +  V  M   G++ +
Sbjct: 258 YAQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGYCKEGKIKEALQFVYRMKDLGLQPN 317

Query: 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEF--QPTLESCTLLVEAYGQAGDPDQARSN 419
             ++ +L++ F    D  G  ++  +M  EEF  +P + + + ++ A+  AG  D+ R  
Sbjct: 318 LVVFNSLIKGFIDAVDRDGVNEVLTLM--EEFGVKPDVITFSTIMNAWSAAGFMDKCREI 375

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD-WL- 477
           FD M++   +PD    + +   Y +    +KA  +L  + K GF P    +T +++ W  
Sbjct: 376 FDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMIKSGFHPNVVIFTTIINGWCS 435

Query: 478 -GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG 536
            GR++    A ++  K+ E G AP  K   +L   Y  A    K+ + L  +E    Q  
Sbjct: 436 AGRMEY---AIKIFEKMCECGIAPNLKTFETLIWGYGEARQPWKSEEVLQIMEEFNVQPE 492

Query: 537 PDDFERIINGLLAGGFLQDAQRV 559
                 +     A G  ++A R+
Sbjct: 493 KTTLLLVAEAWRATGLKKEANRI 515



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/326 (20%), Positives = 144/326 (44%), Gaps = 9/326 (2%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+ A   +   +    I+ ++ ENG+ PD +    +++ +S++GN+  A + F  ++
Sbjct: 110 YTTLLAALTIQKHFDSIHSIISQVEENGMEPDSIFFNAVINAFSESGNMQEAMKYFWKMK 169

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS-GIERSEEIYLALLRSFAQCGDV 378
             G +P    +N++I  Y  AG+P+    L+++M     +  +   Y  L+R++    ++
Sbjct: 170 ESGSKPTTSTFNTLIKGYGIAGEPEESQKLLELMSQDENVRPNLRTYNVLVRAWCNKKNI 229

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             A  +   M     QP   +   +  AY Q G+  QA      M     +P++R    +
Sbjct: 230 MKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAEGIILEMQNSNVQPNERTCCII 289

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE--AEQLLGKISEL 496
           I  Y K+  + +AL  +  ++  G +P    +  L+   G +  ++     ++L  + E 
Sbjct: 290 IGGYCKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIK--GFIDAVDRDGVNEVLTLMEEF 347

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQ 554
           G  P      ++ + ++ AG   K  +   F +  K ++ PD   +  +  G +  G  +
Sbjct: 348 GVKPDVITFSTIMNAWSAAGFMDKCREI--FDDMVKARIQPDAHVYSILAKGYVRAGEPE 405

Query: 555 DAQRVHGLMEAQGFAASERLKVALIS 580
            A+ +   M   GF  +  +   +I+
Sbjct: 406 KAEEILNAMIKSGFHPNVVIFTTIIN 431



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/314 (21%), Positives = 139/314 (44%), Gaps = 2/314 (0%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
            LS+ S +T VR  +KL++   ++   ++ + IL  + E G  P +VT T L+   +   
Sbjct: 63  CLSKTSCRT-VRSRTKLMNIMIEKGRPQEVQSILDSIIEGGHKPSLVTYTTLLAALTIQK 121

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           + D        +  +G +PD   +N++I A+  +G  +  M     M  SG + +   + 
Sbjct: 122 HFDSIHSIISQVEENGMEPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFN 181

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEE-FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
            L++ +   G+   + ++  +M  +E  +P L +  +LV A+    +  +A +    M+ 
Sbjct: 182 TLIKGYGIAGEPEESQKLLELMSQDENVRPNLRTYNVLVRAWCNKKNIMKAWNVVYKMVA 241

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
            G +PD     ++  AY +     +A  ++LE++    +P   T  +++    +   I E
Sbjct: 242 SGLQPDAVTYNTIATAYAQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGYCKEGKIKE 301

Query: 486 AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIIN 545
           A Q + ++ +LG  P   +  SL   +  A       + L  +E    +     F  I+N
Sbjct: 302 ALQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNEVLTLMEEFGVKPDVITFSTIMN 361

Query: 546 GLLAGGFLQDAQRV 559
              A GF+   + +
Sbjct: 362 AWSAAGFMDKCREI 375



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/342 (20%), Positives = 158/342 (46%), Gaps = 14/342 (4%)

Query: 195 TDKILSL-EKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESF 253
           + K+L L  ++E+  P L  +  L++     W N  + ++  N      V ++V S    
Sbjct: 196 SQKLLELMSQDENVRPNLRTYNVLVRA----WCNKKNIMKAWNV-----VYKMVAS--GL 244

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           Q +   Y+ +  A+A+      AE I+ +M  + + P+  T  +++  Y K G +  A +
Sbjct: 245 QPDAVTYNTIATAYAQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGYCKEGKIKEALQ 304

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
               ++  G QP+  V+NS+I  +++A        ++ +M   G++     +  ++ +++
Sbjct: 305 FVYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNEVLTLMEEFGVKPDVITFSTIMNAWS 364

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
             G +    +I + M     QP     ++L + Y +AG+P++A    + MI+ G  P+  
Sbjct: 365 AAGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMIKSGFHPNVV 424

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
              ++I  +     ++ A+ +  ++ + G  P   T+  L+   G  +   ++E++L  +
Sbjct: 425 IFTTIINGWCSAGRMEYAIKIFEKMCECGIAPNLKTFETLIWGYGEARQPWKSEEVLQIM 484

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQM 535
            E    P     + + + +   G++K+A + L  +  K E+M
Sbjct: 485 EEFNVQPEKTTLLLVAEAWRATGLKKEANRILSAV--KNEEM 524


>gi|4038037|gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1107

 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 148/337 (43%), Gaps = 6/337 (1%)

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
            R  + L+   AK    +D +R  K M   G  P + T  +++    K G+++ A+  FE
Sbjct: 95  TRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFE 154

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
            ++  G  PD   YNSMI  +   G+    +   + M     E     Y AL+  F + G
Sbjct: 155 EMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFG 214

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
            +    +    M+    +P + S + LV+A+ + G   QA   +  M R+G  P++    
Sbjct: 215 KLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYT 274

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
           S+I A  K   L  A  L  E+ + G E    TYT L+D L   + + EAE+L GK+   
Sbjct: 275 SLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTA 334

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQ 554
           G  P      +L   + +A    +AL+ L   E K   + PD   +   I GL +   ++
Sbjct: 335 GVIPNLASYNALIHGFVKAKNMDRALELLN--ELKGRGIKPDLLLYGTFIWGLCSLEKIE 392

Query: 555 DAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQPT 591
            A+ V   M+  G  A+  +   L+ +  + +   PT
Sbjct: 393 AAKVVMNEMKECGIKANSLIYTTLMDA--YFKSGNPT 427



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 134/282 (47%), Gaps = 3/282 (1%)

Query: 218 LQPSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L P+   + +L+D   +  N    F++   +L +   + NV  Y+ LID       +++A
Sbjct: 266 LVPNEYTYTSLIDANCKIGNLSDAFRLGNEML-QVGVEWNVVTYTALIDGLCDAERMKEA 324

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
           E +  KM+  G++P++ +   L+H + KA N+DRA E    L+  G +PD  +Y + I  
Sbjct: 325 EELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWG 384

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
             +  + +    +++ M   GI+ +  IY  L+ ++ + G+      + + M+  + + T
Sbjct: 385 LCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVT 444

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIR-LGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
           + +  +L++   +     +A   F+ +    G + +     +MI    K N ++ A  L 
Sbjct: 445 VVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLF 504

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
            ++ + G  P    YT L+D   +   + EA  L  K++E+G
Sbjct: 505 EQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIG 546



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/378 (21%), Positives = 165/378 (43%), Gaps = 13/378 (3%)

Query: 186 PITGKCKLITDKILSLEKEEDPSPLLAEWKELL----QPSRIDWINLLDRLREQNTQLYF 241
           P T  C  +  +   L K +D       +K+++    +P+   +  ++D + ++      
Sbjct: 93  PKTRSCNGLLHRFAKLGKTDDVKRF---FKDMIGAGARPTVFTYNIMIDCMCKEGD---V 146

Query: 242 KVAELVLSEESFQTNVRD---YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVL 298
           + A  +  E  F+  V D   Y+ +ID   K   L+D     ++M +    PD++T   L
Sbjct: 147 EAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNAL 206

Query: 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
           ++ + K G L    E +  ++ +G +P+   Y++++ A+   G  +  +     M   G+
Sbjct: 207 INCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGL 266

Query: 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418
             +E  Y +L+ +  + G++  A ++ N M     +  + + T L++    A    +A  
Sbjct: 267 VPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEE 326

Query: 419 NFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLG 478
            F  M   G  P+     ++I  + K   +D+AL LL EL+  G +P    Y   +  L 
Sbjct: 327 LFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLC 386

Query: 479 RLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
            L+ I  A+ ++ ++ E G      I  +L D Y ++G   + L  L  ++    ++   
Sbjct: 387 SLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVV 446

Query: 539 DFERIINGLLAGGFLQDA 556
            F  +I+GL     +  A
Sbjct: 447 TFCVLIDGLCKNKLVSKA 464



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 83/173 (47%), Gaps = 6/173 (3%)

Query: 210 LLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKVAEL---VLSEESFQTNVRDYSKLID 265
           LL E KEL ++ + + +  L+D L +   +L  K  +    + ++   Q N   ++ +ID
Sbjct: 432 LLDEMKELDIEVTVVTFCVLIDGLCKN--KLVSKAVDYFNRISNDFGLQANAAIFTAMID 489

Query: 266 AHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQP 325
              K+N +E A  + ++M + G+VPD    T L+    K GN+  A    + +   G + 
Sbjct: 490 GLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKL 549

Query: 326 DKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
           D   Y S++    +  Q +   S ++ MI  GI   E + +++L+   + G +
Sbjct: 550 DLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLKKHYELGCI 602



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 90/208 (43%), Gaps = 1/208 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E   + N   Y+ L+DA+ K     +   +L +M E  I   +VT  VL+    K   
Sbjct: 401 MKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKL 460

Query: 308 LDRAKEAFESLRS-HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           + +A + F  + +  G Q +  ++ +MI       Q +   +L + M+  G+      Y 
Sbjct: 461 VSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYT 520

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           +L+    + G+V  A  + + M     +  L + T LV          +ARS  + MI  
Sbjct: 521 SLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGE 580

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNL 454
           G  PD+    S++  + +   +D+A+ L
Sbjct: 581 GIHPDEVLCISVLKKHYELGCIDEAVEL 608



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/222 (19%), Positives = 88/222 (39%), Gaps = 4/222 (1%)

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
           ++ AL       G +  A Q  + M+     P   SC  L+  + + G  D  +  F  M
Sbjct: 62  VFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDM 121

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483
           I  G +P       MI    K+  ++ A  L  E++  G  P   TY  ++D  G++  +
Sbjct: 122 IGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRL 181

Query: 484 NEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFE 541
           ++      ++ ++   P      +L + + + G     L+   + E K   + P+   + 
Sbjct: 182 DDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEF--YREMKGNGLKPNVVSYS 239

Query: 542 RIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQT 583
            +++     G +Q A + +  M   G   +E    +LI +  
Sbjct: 240 TLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANC 281



 Score = 45.8 bits (107), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 49/238 (20%), Positives = 93/238 (39%), Gaps = 18/238 (7%)

Query: 198 ILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKVAELV--------L 248
           + SLEK E    ++ E KE  ++ + + +  L+D         YFK             +
Sbjct: 385 LCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDA--------YFKSGNPTEGLHLLDEM 436

Query: 249 SEESFQTNVRDYSKLIDAHAKENCLEDAERILKKM-NENGIVPDIVTSTVLVHMYSKAGN 307
            E   +  V  +  LID   K   +  A     ++ N+ G+  +    T ++    K   
Sbjct: 437 KELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQ 496

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           ++ A   FE +   G  PD+  Y S++      G     ++L D M   G++     Y +
Sbjct: 497 VEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTS 556

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
           L+   + C  ++ A      M  E   P    C  +++ + + G  D+A     Y+++
Sbjct: 557 LVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLKKHYELGCIDEAVELQSYLMK 614


>gi|356561679|ref|XP_003549107.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12775, mitochondrial-like [Glycine max]
          Length = 750

 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 133/317 (41%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           + FQ N   Y  LI+   K    +   R+L+K+  + + PD+V    ++H   K   L  
Sbjct: 162 QGFQLNQVSYRTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGD 221

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A + +  +   G  P+   YN+++  +   G  K   SL++ M    I      +  L+ 
Sbjct: 222 ACDLYSEMIVKGISPNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLID 281

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
           +  + G ++ A  +  +M     +P + +   L++ Y        A+  F  M + G  P
Sbjct: 282 ALGKEGKMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTP 341

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           + R   +MI    K+ ++D+A++L  E++     P   TYT L+D L +   +  A  L 
Sbjct: 342 NVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIALC 401

Query: 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAG 550
            K+ E G  P       L D   + G  + A +    L  K   +    +  +INGL   
Sbjct: 402 KKMKEQGIQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYNVMINGLCKA 461

Query: 551 GFLQDAQRVHGLMEAQG 567
               +A  +   ME +G
Sbjct: 462 DLFGEAMDLKSKMEGKG 478



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 142/335 (42%), Gaps = 23/335 (6%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           ++  Y+ LID   K + LE A  + KKM E GI PD+ + T+L+    K G L+ AKE F
Sbjct: 377 DIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKEFF 436

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI----------------- 358
           + L   G+  + + YN MI     A      M L   M   G                  
Sbjct: 437 QRLLVKGYHLNVQTYNVMINGLCKADLFGEAMDLKSKMEGKGCMPDAITFKTIICALFEK 496

Query: 359 ---ERSEEIYLALL-RSFAQCGDVR--GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGD 412
              +++E+I   ++ R   +   VR   A  +  +M     +P + +   L++ Y    +
Sbjct: 497 DENDKAEKILREMIARGLQEARKVRLKEAKIVLAVMTKACIKPDVVTYGTLMDGYFLVNE 556

Query: 413 PDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTV 472
              A+  F  M ++G  P+ +C   MI    KK  +D+A++L  E++     P   TYT 
Sbjct: 557 LKHAKYVFYSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTS 616

Query: 473 LVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKK 532
           L+D L +   +  A  LL ++ E G  P       L D   ++G  + A +    L  K 
Sbjct: 617 LIDALCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKSGRLEGAKEIFQRLLVKG 676

Query: 533 EQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
             +    +  +IN L   G   +A  +   ME +G
Sbjct: 677 YHLNVQVYTAMINELCKAGLFDEALDLQXKMEDKG 711



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 82/397 (20%), Positives = 164/397 (41%), Gaps = 29/397 (7%)

Query: 210 LLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAK 269
           L    K  ++P  + + +L+D     N     K     +++     NVR Y+ +ID   K
Sbjct: 296 LAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCK 355

Query: 270 ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKV 329
           E  +++A  + ++M    ++PDIVT T L+    K  +L+RA    + ++  G QPD   
Sbjct: 356 EKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYS 415

Query: 330 YNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRG-AGQITNIM 388
           Y  ++ A    G+ +        ++  G   + + Y  ++    +  D+ G A  + + M
Sbjct: 416 YTILLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYNVMINGLCK-ADLFGEAMDLKSKM 474

Query: 389 RIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH-------------------- 428
             +   P   +   ++ A  +  + D+A      MI  G                     
Sbjct: 475 EGKGCMPDAITFKTIICALFEKDENDKAEKILREMIARGLQEARKVRLKEAKIVLAVMTK 534

Query: 429 ---KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
              KPD     +++  Y   N L  A  +   + + G  P    YT+++D L + + ++E
Sbjct: 535 ACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMIDGLCKKKTVDE 594

Query: 486 AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERI 543
           A  L  ++      P      SL D   +    ++A+  L   E K+  + PD   +  +
Sbjct: 595 AMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLK--EMKEHGIQPDVYSYTIL 652

Query: 544 INGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
           ++GL   G L+ A+ +   +  +G+  + ++  A+I+
Sbjct: 653 LDGLCKSGRLEGAKEIFQRLLVKGYHLNVQVYTAMIN 689



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 166/369 (44%), Gaps = 26/369 (7%)

Query: 210 LLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELV--LSEESFQTNVRDYSKLIDAH 267
           ++A+  +L Q S    IN L +  E        VA L+  L   S + +V  Y+ +I + 
Sbjct: 159 VVAQGFQLNQVSYRTLINGLCKTGETKA-----VARLLRKLEGHSVKPDVVMYNTIIHSL 213

Query: 268 AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK 327
            K   L DA  +  +M   GI P++VT   LV+ +   G+L  A      ++     PD 
Sbjct: 214 CKNKLLGDACDLYSEMIVKGISPNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDV 273

Query: 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNI 387
             +N++I A    G+ K    ++ +M+ + I+     Y +L+  +     V+ A  +   
Sbjct: 274 CTFNTLIDALGKEGKMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYS 333

Query: 388 MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447
           M      P + + T +++   +    D+A S F+ M      PD     S+I    K + 
Sbjct: 334 MAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHH 393

Query: 448 LDKALNLLLELEKDGFEPGPATYTVLVDWL---GRLQLINEAEQ-LLGKISELGEAPPFK 503
           L++A+ L  ++++ G +P   +YT+L+D L   GRL+   E  Q LL K   L     + 
Sbjct: 394 LERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKGYHLN-VQTYN 452

Query: 504 IQVS-LC--DMYARA----------GIEKKALQALGFLEAKKEQMGPDDFERIINGLLAG 550
           + ++ LC  D++  A          G    A+     + A  E+   D  E+I+  ++A 
Sbjct: 453 VMINGLCKADLFGEAMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKILREMIAR 512

Query: 551 GFLQDAQRV 559
           G LQ+A++V
Sbjct: 513 G-LQEARKV 520



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/327 (19%), Positives = 128/327 (39%), Gaps = 41/327 (12%)

Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338
           + KK   NG  PD+ T  +L++ +    ++  A     ++   G+ P+    N++I    
Sbjct: 85  LFKKFESNGATPDLCTLNILMNCFCHLTHITFAFSVLANILKRGYHPNAITLNTLIKGLC 144

Query: 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL- 397
             G+ K  +   D ++  G + ++  Y  L+    + G+ +   ++   +     +P + 
Sbjct: 145 FRGEIKKALYFHDQVVAQGFQLNQVSYRTLINGLCKTGETKAVARLLRKLEGHSVKPDVV 204

Query: 398 ----------------ESCTLLVEAYGQAGDPDQARSN---FDYMIRLGH---------- 428
                           ++C L  E   +   P+    N   + + I +GH          
Sbjct: 205 MYNTIIHSLCKNKLLGDACDLYSEMIVKGISPNVVTYNALVYGFCI-MGHLKEAFSLLNE 263

Query: 429 ------KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
                  PD     ++I A GK+  +  A  +L  + K   +P   TY  L+D    L  
Sbjct: 264 MKLKNINPDVCTFNTLIDALGKEGKMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNK 323

Query: 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DF 540
           +  A+ +   +++ G  P  +   ++ D   +  +  +A+    F E K + M PD   +
Sbjct: 324 VKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSL--FEEMKYKNMIPDIVTY 381

Query: 541 ERIINGLLAGGFLQDAQRVHGLMEAQG 567
             +I+GL     L+ A  +   M+ QG
Sbjct: 382 TSLIDGLCKNHHLERAIALCKKMKEQG 408



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 93/204 (45%), Gaps = 1/204 (0%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           L++A+ +L  M +  I PD+VT   L+  Y     L  AK  F S+   G  P+ + Y  
Sbjct: 522 LKEAKIVLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTI 581

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           MI            MSL + M    +  +   Y +L+ +  +   +  A  +   M+   
Sbjct: 582 MIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHG 641

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
            QP + S T+L++   ++G  + A+  F  ++  G+  + +   +MI    K  L D+AL
Sbjct: 642 IQPDVYSYTILLDGLCKSGRLEGAKEIFQRLLVKGYHLNVQVYTAMINELCKAGLFDEAL 701

Query: 453 NLLLELEKDGFEPGPATYTVLVDW 476
           +L  ++E  G  P   T+ +++ W
Sbjct: 702 DLQXKMEDKGCMPDAVTFDIII-W 724



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/162 (21%), Positives = 76/162 (46%)

Query: 215 KELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           K  ++P  + +  L+D     N   + K     +++     NV+ Y+ +ID   K+  ++
Sbjct: 534 KACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMIDGLCKKKTVD 593

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           +A  + ++M    + P+IVT T L+    K  +L+RA    + ++ HG QPD   Y  ++
Sbjct: 594 EAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQPDVYSYTILL 653

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
                +G+ +    +   ++  G   + ++Y A++    + G
Sbjct: 654 DGLCKSGRLEGAKEIFQRLLVKGYHLNVQVYTAMINELCKAG 695



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 98/222 (44%)

Query: 242 KVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM 301
           K+   V+++   + +V  Y  L+D +   N L+ A+ +   M + G+ P++   T+++  
Sbjct: 526 KIVLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMIDG 585

Query: 302 YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS 361
             K   +D A   FE ++     P+   Y S+I A       +  ++L+  M   GI+  
Sbjct: 586 LCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQPD 645

Query: 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421
              Y  LL    + G + GA +I   + ++ +   ++  T ++    +AG  D+A     
Sbjct: 646 VYSYTILLDGLCKSGRLEGAKEIFQRLLVKGYHLNVQVYTAMINELCKAGLFDEALDLQX 705

Query: 422 YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGF 463
            M   G  PD      +I A  +K+  DKA  +L E+   G 
Sbjct: 706 KMEDKGCMPDAVTFDIIIWALFEKDENDKAEKILXEMIARGL 747



 Score = 40.8 bits (94), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 2/118 (1%)

Query: 220 PSRIDWINLLDRLREQNTQLYFKVAELV-LSEESFQTNVRDYSKLIDAHAKENCLEDAER 278
           P+ + + +L+D L  +N  L   +A L  + E   Q +V  Y+ L+D   K   LE A+ 
Sbjct: 609 PNIVTYTSLIDALC-KNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKSGRLEGAKE 667

Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
           I +++   G   ++   T +++   KAG  D A +    +   G  PD   ++ +I A
Sbjct: 668 IFQRLLVKGYHLNVQVYTAMINELCKAGLFDEALDLQXKMEDKGCMPDAVTFDIIIWA 725


>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
 gi|222840912|gb|EEE78459.1| predicted protein [Populus trichocarpa]
          Length = 836

 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 119/241 (49%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI    KE  +++   + ++M + GI PDI T  +L+H    A  +D A   +   +
Sbjct: 539 YNTLISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECK 598

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
            +G+ P+   Y  MI  Y  A + + G +L++ +++  +E +  +Y +L+R++   G++ 
Sbjct: 599 KNGYVPNVYTYGVMIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMN 658

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++ + M+      +  + + L+      G  D A+   D M + G  P+  C  ++I
Sbjct: 659 AAFRLRDDMKSRGVLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTII 718

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             Y K   ++K   +L E+      P   TYT+++D   +L    EA +LL +++E G  
Sbjct: 719 GGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGIL 778

Query: 500 P 500
           P
Sbjct: 779 P 779



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 106/248 (42%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + ++  Q ++  ++ L+      + +++A R+  +  +NG VP++ T  V++  Y KA  
Sbjct: 562 MVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCKANK 621

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           ++  +     L S   + +  VYNS+I AY   G       L D M + G+  S   Y +
Sbjct: 622 VEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSS 681

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+      G V  A  + + MR E   P +   T ++  Y + G  ++       M    
Sbjct: 682 LMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHN 741

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P+      MI  + K     +A  LL E+ + G  P   TY    + L +   + EA 
Sbjct: 742 IHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTNGLCKEGKVEEAF 801

Query: 488 QLLGKISE 495
           ++  ++S 
Sbjct: 802 KVCDEMSS 809



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 75/347 (21%), Positives = 152/347 (43%), Gaps = 10/347 (2%)

Query: 223 IDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKK 282
           I+W+ L  R     T L+F + E++L   + + N    + L+    K     +A  +  +
Sbjct: 438 INWLCLKFRFV---TALHF-IREMLL--RNLRPNDGLLTTLVSGLCKAGKQGEAVELWCR 491

Query: 283 MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
           +   G VP+IVTS  L+H   KAGN+    +    +   G   D+  YN++I      G+
Sbjct: 492 LLGKGFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGK 551

Query: 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402
            K G  L + M+  GI+     +  LL        +  A ++ +  +   + P + +  +
Sbjct: 552 VKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGV 611

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           +++ Y +A   ++  +  + ++    + +     S+I AY     ++ A  L  +++  G
Sbjct: 612 MIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRG 671

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522
                ATY+ L+  L  + L+++A+ LL ++ + G  P      ++   Y++ G   K  
Sbjct: 672 VLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVN 731

Query: 523 QALGFLEAKKEQMGPDDFER--IINGLLAGGFLQDAQRVHGLMEAQG 567
             L   E     + P+ F    +I+G    G  ++A ++   M  +G
Sbjct: 732 IVLQ--EMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKG 776



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 84/409 (20%), Positives = 172/409 (42%), Gaps = 42/409 (10%)

Query: 202 EKEEDPSPLLAEWKEL-LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRD 259
            +E+D   L ++ ++L + P+ + + N++  L +       ++  E ++ E+    ++  
Sbjct: 270 HREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEK-VSPSLIT 328

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS  I+   K   +++A  +LK+M+E G VP+ V    L+  Y K GN+  A +  + + 
Sbjct: 329 YSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIRDDML 388

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           S G  P+    NS+I  +  + Q     ++++ MI  G+  ++  +  ++     C   R
Sbjct: 389 SKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFSMVINWL--CLKFR 446

Query: 380 GAGQITNI--MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
               +  I  M +   +P     T LV    +AG   +A   +  ++  G  P+   + +
Sbjct: 447 FVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFVPNIVTSNA 506

Query: 438 MIAAYGK-----------KNLLDKAL-------NLLL-----------------ELEKDG 462
           +I    K           +++L++ L       N L+                 E+ K G
Sbjct: 507 LIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKG 566

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522
            +P   T+ +L+  L     I+EA +L  +  + G  P       + D Y +A   ++  
Sbjct: 567 IQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCKANKVEEGE 626

Query: 523 QALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAAS 571
             L  L +KK ++    +  +I      G +  A R+   M+++G   S
Sbjct: 627 NLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLS 675



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/307 (20%), Positives = 129/307 (42%), Gaps = 6/307 (1%)

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A  +   + + G+ P + T T L+    KA  L ++ E ++ +   G  PD  ++++MI 
Sbjct: 205 AADVFSLLAKKGLFPSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMIN 264

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
           A+    +    + L   M   G+  +   Y  ++    + G +  A +    M  E+  P
Sbjct: 265 AFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSP 324

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
           +L + ++ +    +    D+A      M  LG  P++    ++I  Y K   + +AL + 
Sbjct: 325 SLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIR 384

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
            ++   G  P   T   L+    +   I +AE +L ++  +G   P   Q S   +    
Sbjct: 385 DDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEM--IGRGLPIN-QGSFSMVINWL 441

Query: 516 GIEKKALQALGFL-EAKKEQMGPDD--FERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572
            ++ + + AL F+ E     + P+D     +++GL   G   +A  +   +  +GF  + 
Sbjct: 442 CLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFVPNI 501

Query: 573 RLKVALI 579
               ALI
Sbjct: 502 VTSNALI 508



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/231 (19%), Positives = 99/231 (42%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           +L+++    +++  + L+ +  K N L+ +  +   +   GI+PD+   + +++ + K  
Sbjct: 211 LLAKKGLFPSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMINAFCKGH 270

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
             D A   F  +   G  P+   YN++I     +G+        + M+   +  S   Y 
Sbjct: 271 REDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSPSLITYS 330

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
             +    +   +  A  +   M    F P       L++ Y + G+  +A    D M+  
Sbjct: 331 VFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIRDDMLSK 390

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
           G  P+     S+I  + K + + +A N+L E+   G      +++++++WL
Sbjct: 391 GISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFSMVINWL 441



 Score = 45.8 bits (107), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 27/127 (21%), Positives = 53/127 (41%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + +E    NV  Y+ +I  ++K   +     +L++M+ + I P+  T T+++  + K G 
Sbjct: 702 MRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGK 761

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
              A +    +   G  PD   YN+        G+ +    + D M +  +   E  Y  
Sbjct: 762 TKEAAKLLNEMTEKGILPDAVTYNAFTNGLCKEGKVEEAFKVCDEMSSGAVCLDEITYTT 821

Query: 368 LLRSFAQ 374
           L+    Q
Sbjct: 822 LIDGCHQ 828


>gi|449438627|ref|XP_004137089.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Cucumis sativus]
          Length = 831

 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 144/319 (45%), Gaps = 6/319 (1%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           Q N+  ++ LI  H       +  ++ +++     VPDIVT   L+ ++ + G       
Sbjct: 428 QPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSG 487

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            F+ ++  GF P++  +N++I AY   G     M++   M+ +G+      Y A+L + A
Sbjct: 488 VFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALA 547

Query: 374 QCGDVRGAGQITNIMRIEEFQPT-LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
           + G    + ++   M+    +P  L  C+LL  AY    + ++  +  + +     +P  
Sbjct: 548 RGGLWEQSEKVLAEMKDGRCKPNELTYCSLL-HAYANGKEVERMSALAEEIYSGIIEPQA 606

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               +++  Y K +LL +     LEL + GF P   T   +V   GR +++++  ++L  
Sbjct: 607 VLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNF 666

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAG 550
           I + G  P      SL  MY+R    +K+   L  + AK   M PD   F  +I      
Sbjct: 667 IKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKG--MKPDIISFNTVIFAYCRN 724

Query: 551 GFLQDAQRVHGLMEAQGFA 569
           G +++A R+   M+  G A
Sbjct: 725 GRMKEASRIFAEMKDFGLA 743



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 134/292 (45%), Gaps = 5/292 (1%)

Query: 238 QLYFKVAELV--LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTS 295
            LY + AE+   +    F  +   Y+ L+D + K     +A  +LK+M  +G  P IVT 
Sbjct: 305 SLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTY 364

Query: 296 TVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMIT 355
             L+  Y++ G LD A E    +   G +PD   Y +++  +   G+    M + + M  
Sbjct: 365 NSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRV 424

Query: 356 SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ 415
           +G + +   + AL++     G+     ++   ++I E  P + +   L+  +GQ G   +
Sbjct: 425 AGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSE 484

Query: 416 ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
               F  M R G  P+     ++I+AY +    D+A+ +   +   G  P  +TY  ++ 
Sbjct: 485 VSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLA 544

Query: 476 WLGRLQLINEAEQLLGKISELGEAPPFKIQ-VSLCDMYARAGIEKKALQALG 526
            L R  L  ++E++L ++ + G   P ++   SL   YA  G E + + AL 
Sbjct: 545 ALARGGLWEQSEKVLAEMKD-GRCKPNELTYCSLLHAYAN-GKEVERMSALA 594



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/323 (22%), Positives = 137/323 (42%), Gaps = 5/323 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG- 306
           L  +    ++  Y+ LI A+A      +A  + KK+ E G  P ++T  V++++Y K G 
Sbjct: 211 LRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILNVYGKMGM 270

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
              +     +S++S G  PD   YN++I +       +    + + M  +G    +  Y 
Sbjct: 271 PWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYN 330

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           ALL  + +    R A ++   M    F P++ +   L+ AY + G  D+A      M++ 
Sbjct: 331 ALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKK 390

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G KPD     ++++ + K    D A+ +  E+   G +P   T+  L+   G      E 
Sbjct: 391 GIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEM 450

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP--DDFERII 544
            ++  +I      P      +L  ++ + G++ +      F E K+    P  D F  +I
Sbjct: 451 MKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSGV--FKEMKRAGFVPERDTFNTLI 508

Query: 545 NGLLAGGFLQDAQRVHGLMEAQG 567
           +     GF   A  ++  M   G
Sbjct: 509 SAYSRCGFFDQAMAIYRRMLDAG 531



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 106/246 (43%), Gaps = 10/246 (4%)

Query: 239 LYFKVAELVLSEESFQTNVRDYSKL---------IDAHAKENCLEDAERILKKMNENGIV 289
           +++K  EL L    F  N  D++ +         I    KE     A  +L  +  +G+ 
Sbjct: 158 VFYKKNELALCVFYFVRNREDFASILSNSVVAVIISVLGKEGRASFAASLLHDLRNDGVH 217

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMS- 348
            DI   T L+  Y+  G    A   F+ L   G +P    YN ++  Y   G P   ++ 
Sbjct: 218 IDIYAYTSLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILNVYGKMGMPWSKIAG 277

Query: 349 LVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYG 408
           LVD M +SG+      Y  L+ S  +      A ++   M+   F P   +   L++ YG
Sbjct: 278 LVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYG 337

Query: 409 QAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPA 468
           ++  P +A      M   G  P      S+I+AY +  LLD+A+ L  ++ K G +P   
Sbjct: 338 KSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVF 397

Query: 469 TYTVLV 474
           TYT L+
Sbjct: 398 TYTTLL 403



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 105/237 (44%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  L+ A+A    +E    + +++    I P  V    LV +YSK+  L   + AF  LR
Sbjct: 574 YCSLLHAYANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELR 633

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             GF PD    N+M+  Y           +++ +  SG   S   Y +L+  +++     
Sbjct: 634 EQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFE 693

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            +  I   +  +  +P + S   ++ AY + G   +A   F  M   G  PD     + I
Sbjct: 694 KSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFI 753

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
           A+Y   ++  +A++++  + K+G +P   TY  L+DW  +L   +EA   +  +  L
Sbjct: 754 ASYASDSMFIEAIDVVKYMIKNGCKPNQNTYNSLIDWFCKLNRRDEASSFISNLRNL 810



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 109/260 (41%), Gaps = 2/260 (0%)

Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338
           + K+M   G VP+  T   L+  YS+ G  D+A   +  +   G  PD   YN+++ A  
Sbjct: 488 VFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALA 547

Query: 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398
             G  +    ++  M     + +E  Y +LL ++A   +V     +   +     +P   
Sbjct: 548 RGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVERMSALAEEIYSGIIEPQAV 607

Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
               LV  Y ++    +    F  +   G  PD     +M++ YG++ ++ K   +L  +
Sbjct: 608 LLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFI 667

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
           +  GF P   TY  L+    R +   ++E +L +I   G  P      ++   Y R G  
Sbjct: 668 KDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRM 727

Query: 519 KKALQALGFLEAKKEQMGPD 538
           K+A +   F E K   + PD
Sbjct: 728 KEASRI--FAEMKDFGLAPD 745



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 109/242 (45%), Gaps = 11/242 (4%)

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
           R +E F S+ S+       V   +I      G+     SL+  +   G+      Y +L+
Sbjct: 174 RNREDFASILSNS------VVAVIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLI 227

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDP-DQARSNFDYMIRLGH 428
            ++A  G  R A  +   +  E  +PTL +  +++  YG+ G P  +     D M   G 
Sbjct: 228 TAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGV 287

Query: 429 KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQ 488
            PD     ++I++  + +L ++A  +  E++  GF P   TY  L+D  G+ +   EA +
Sbjct: 288 APDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAME 347

Query: 489 LLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLL 548
           +L ++   G AP      SL   YAR G+  +A++     +  K+ + PD F      LL
Sbjct: 348 VLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKS--QMVKKGIKPDVF--TYTTLL 403

Query: 549 AG 550
           +G
Sbjct: 404 SG 405



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 63/127 (49%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + +  F  ++  Y+ L+  +++    E +E IL+++   G+ PDI++   ++  Y + G 
Sbjct: 667 IKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGR 726

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A   F  ++  G  PD   YN+ I +Y +       + +V  MI +G + ++  Y +
Sbjct: 727 MKEASRIFAEMKDFGLAPDVITYNTFIASYASDSMFIEAIDVVKYMIKNGCKPNQNTYNS 786

Query: 368 LLRSFAQ 374
           L+  F +
Sbjct: 787 LIDWFCK 793



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/215 (21%), Positives = 91/215 (42%), Gaps = 35/215 (16%)

Query: 244 AELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS 303
           A L L E+ F  ++   + ++  + +   +     IL  + ++G  P + T   L++MYS
Sbjct: 628 AFLELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYS 687

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363
           +  + +++++    + + G +PD   +N++I AY   G+ K              E S  
Sbjct: 688 RTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMK--------------EAS-- 731

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
                 R FA+  D    G   +++    F  +  S ++ +EA               YM
Sbjct: 732 ------RIFAEMKDF---GLAPDVITYNTFIASYASDSMFIEAIDVV----------KYM 772

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
           I+ G KP+     S+I  + K N  D+A + +  L
Sbjct: 773 IKNGCKPNQNTYNSLIDWFCKLNRRDEASSFISNL 807


>gi|307103654|gb|EFN51912.1| hypothetical protein CHLNCDRAFT_59068 [Chlorella variabilis]
          Length = 1025

 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 134/316 (42%), Gaps = 41/316 (12%)

Query: 242 KVAELV--LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLV 299
           +  ELV  +     Q NV  YS L++   K N L+ A  + ++M   G  P++VT   L+
Sbjct: 213 RALELVAEMRSRGIQCNVHTYSALMNVCIKGNELDLALDVYRQMLAEGCTPNLVTYNTLI 272

Query: 300 HMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
            +Y K G  + A    ++L   G  P+ + YN++I+A   +GQ +  + + + M+ +G  
Sbjct: 273 DVYGKTGAWEEAIRVLDALERQGIDPEIRTYNTVIIACNMSGQAQEALRIYERMLAAGA- 331

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
                                             QPT  + T L+ AYG+ G  D+A   
Sbjct: 332 ----------------------------------QPTATTYTALISAYGKNGQLDRALQI 357

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
           F  M+R G + +    +S+I+A  K    + AL L  E+  +G  P   TY  L+    +
Sbjct: 358 FQDMVRRGCERNVITYSSLISACEKAGRWELALELFREMHTEGCRPNVVTYNSLIAACAQ 417

Query: 480 LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD 539
                +A+++  ++   G  P       L   Y RAG  ++AL A  F + K     PD 
Sbjct: 418 GAQWEKAQEMFEQMQHRGCKPDAVTFGGLIAAYDRAGHWRRALTA--FEQMKAHNCRPDS 475

Query: 540 --FERIINGLLAGGFL 553
             +  I+  L   G +
Sbjct: 476 VVYNTIVGALWKTGLV 491



 Score = 42.4 bits (98), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 72/153 (47%), Gaps = 4/153 (2%)

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
           +MI+  G +  L +AL L+ E+   G +    TY+ L++   +   ++ A  +  ++   
Sbjct: 200 TMISQCGTQQQLRRALELVAEMRSRGIQCNVHTYSALMNVCIKGNELDLALDVYRQMLAE 259

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQ 554
           G  P      +L D+Y + G  ++A++ L  LE  ++ + P+   +  +I      G  Q
Sbjct: 260 GCTPNLVTYNTLIDVYGKTGAWEEAIRVLDALE--RQGIDPEIRTYNTVIIACNMSGQAQ 317

Query: 555 DAQRVHGLMEAQGFAASERLKVALISSQTFNRQ 587
           +A R++  M A G   +     ALIS+   N Q
Sbjct: 318 EALRIYERMLAAGAQPTATTYTALISAYGKNGQ 350


>gi|414586649|tpg|DAA37220.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
 gi|414586650|tpg|DAA37221.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
          Length = 969

 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/345 (22%), Positives = 153/345 (44%), Gaps = 17/345 (4%)

Query: 241 FKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
           F++ +L++  + F  +   YSK+I    +   +E A  + ++M   G++PD+ T T+L+ 
Sbjct: 440 FQIIKLMM-RKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYTILID 498

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
            + K G +++A+  F+ + S G  P    Y +++ AY+   Q      +   M+ +G   
Sbjct: 499 SFCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAGCAP 558

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIM----------------RIEEFQPTLESCTLLV 404
           +   Y AL+    + G+ + A ++   M                  +   P + +   L+
Sbjct: 559 NTITYSALVDGLCKAGESQKACEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGALI 618

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
           +   +A     A+   D M   G +P+     ++I  + K   LD A  +   + K G+ 
Sbjct: 619 DGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQEVFFRMSKCGYL 678

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQA 524
           P   TYT L+D + + + ++ A ++L ++ E    P      ++ D   R G  +KAL+ 
Sbjct: 679 PTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGLCRIGECQKALKL 738

Query: 525 LGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
           L  +E +        +  +I+GL   G +  + ++   M  QG A
Sbjct: 739 LSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCA 783



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 148/343 (43%), Gaps = 27/343 (7%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           +S   NV  Y  LID   K + + DA+ +L  M+ NG  P+ +    L+  + K G LD 
Sbjct: 605 DSIAPNVVTYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFCKVGKLDN 664

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A+E F  +   G+ P    Y S+I A     +  L + ++  M+ S    +   Y A++ 
Sbjct: 665 AQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMID 724

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
              + G+ + A ++ ++M      P + + T L++  G++G  D +   F  MI  G  P
Sbjct: 725 GLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAP 784

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD-----WLGRLQLINE 485
           +      +I       LLD+A +LL E+++  +      Y  +V      ++  L L+ E
Sbjct: 785 NYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYVQGYCSVVQGFSKKFIASLGLLEE 844

Query: 486 AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQM---------G 536
            E   G +S    AP + +   L D +++AG  +KA      LE  KE M          
Sbjct: 845 LES-HGMVS---IAPVYGL---LIDSFSKAGRLEKA------LELHKEMMEVSSSLNITS 891

Query: 537 PDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
            D +  +I  L     L+ A  ++  +  +G        + LI
Sbjct: 892 KDTYTSLIQALCLASQLEKAFELYSEITRKGVVPELSAFICLI 934



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 121/282 (42%), Gaps = 16/282 (5%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA- 314
           +V  Y+ L+ A+ K   +  A  I  +M + G  P+ +T + LV    KAG   +A E  
Sbjct: 524 SVVTYTALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSALVDGLCKAGESQKACEVY 583

Query: 315 ---------------FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
                          FE   +    P+   Y ++I     A +      L+D+M ++G E
Sbjct: 584 AKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDVMSSNGCE 643

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
            +  IY AL+  F + G +  A ++   M    + PT+ + T L++A  +    D A   
Sbjct: 644 PNHIIYDALIDGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKV 703

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
              M+     P+     +MI    +     KAL LL  +EK G  P   TYT L+D LG+
Sbjct: 704 LSQMLESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGK 763

Query: 480 LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKA 521
              ++ + QL  ++   G AP +     L +    AG+  +A
Sbjct: 764 SGKVDMSLQLFTQMITQGCAPNYVTYRVLINHCCAAGLLDEA 805



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 83/393 (21%), Positives = 160/393 (40%), Gaps = 57/393 (14%)

Query: 244 AELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS 303
           A +++  E F+ +    +++I    + +  ++A   L +M  N  +P++VT   L+  + 
Sbjct: 261 ALVMIEREDFKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLAGFL 320

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMM---------- 353
           K   L   K     + + G  P+  ++NS++ +Y NA        L++ M          
Sbjct: 321 KKKQLGWCKRIISMMMNEGCNPNPSLFNSLVHSYCNARDYPYAYKLLNRMAGCGCPPGYV 380

Query: 354 --------ITSG--------IERSEEIYLALLRS-----------FAQC----GDVRGAG 382
                   I SG        +  +E++Y  +L S           FA+C    G    A 
Sbjct: 381 VYNIFIGSICSGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDKAF 440

Query: 383 QITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAY 442
           QI  +M  + F P   + + ++    +A   ++A   F  M  +G  PD      +I ++
Sbjct: 441 QIIKLMMRKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYTILIDSF 500

Query: 443 GKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPF 502
            K  L+++A +   E+E  G  P   TYT L+    + + + +A  +  ++ + G AP  
Sbjct: 501 CKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAGCAPNT 560

Query: 503 KIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD----------------DFERIING 546
               +L D   +AG  +KA +    +    + +G D                 +  +I+G
Sbjct: 561 ITYSALVDGLCKAGESQKACEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGALIDG 620

Query: 547 LLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
           L     + DAQ +  +M + G   +  +  ALI
Sbjct: 621 LCKAHKVVDAQELLDVMSSNGCEPNHIIYDALI 653



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 130/291 (44%), Gaps = 25/291 (8%)

Query: 220 PSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAER 278
           P+   + +L+D + +++   L  KV   +L E S   NV  Y+ +ID   +    + A +
Sbjct: 679 PTVHTYTSLIDAMFKDRRLDLAIKVLSQML-ESSCTPNVVTYTAMIDGLCRIGECQKALK 737

Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338
           +L  M + G  P++VT T L+    K+G +D + + F  + + G  P+   Y  +I    
Sbjct: 738 LLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPNYVTYRVLINHCC 797

Query: 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ---- 394
            AG      SL+  M  +   +  + Y ++++ F++         I ++  +EE +    
Sbjct: 798 AAGLLDEAHSLLSEMKQTYWPKYVQGYCSVVQGFSK-------KFIASLGLLEELESHGM 850

Query: 395 ----PTLESCTLLVEAYGQAGDPDQARSNFDYMI----RLGHKPDDRCTASMIAAYGKKN 446
               P      LL++++ +AG  ++A      M+     L     D  T S+I A    +
Sbjct: 851 VSIAPVY---GLLIDSFSKAGRLEKALELHKEMMEVSSSLNITSKDTYT-SLIQALCLAS 906

Query: 447 LLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
            L+KA  L  E+ + G  P  + +  L+  L ++   NEA QL   + + G
Sbjct: 907 QLEKAFELYSEITRKGVVPELSAFICLIKGLIKVNKWNEALQLCYSMCDEG 957



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 87/210 (41%), Gaps = 7/210 (3%)

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           V+V    + G   +A E    L+  G++P    YN+++     AGQ  +G  +   M   
Sbjct: 177 VIVRKCCRHGAWAKALEELGRLKDFGYRPSGATYNALVQVLATAGQMDMGFRVQKEMSEL 236

Query: 357 GIERSEEIYLALLRSFAQ--CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPD 414
           G    +      +  FAQ  C + R +  +  I R E+F+     CT ++    +A   D
Sbjct: 237 GFCTDKFT----VGCFAQALCKEGRWSDALVMIER-EDFKLDTVLCTQMISGLMEASLFD 291

Query: 415 QARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
           +A S    M      P+     +++A + KK  L     ++  +  +G  P P+ +  LV
Sbjct: 292 EAISFLHRMRCNSCIPNVVTYRTLLAGFLKKKQLGWCKRIISMMMNEGCNPNPSLFNSLV 351

Query: 475 DWLGRLQLINEAEQLLGKISELGEAPPFKI 504
                 +    A +LL +++  G  P + +
Sbjct: 352 HSYCNARDYPYAYKLLNRMAGCGCPPGYVV 381


>gi|356503440|ref|XP_003520516.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Glycine max]
          Length = 832

 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 116/257 (45%), Gaps = 37/257 (14%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVL--------------------- 298
           Y+ LI+A       ++A  + KKM ENG+ PD+VT  ++                     
Sbjct: 224 YNNLINACGSSGNWKEALNVCKKMTENGVGPDLVTHNIILSAFKSGAQYSKALSYFELMK 283

Query: 299 --------------VHMYSKAGNLDRAKEAFESLRSHGFQ--PDKKVYNSMIMAYVNAGQ 342
                         +H   K    D+A E F S+R    +  PD   + S+I  Y   GQ
Sbjct: 284 GTHIRPDTTTLNIVIHCLVKLRQYDKAIEIFNSMREKKSECTPDVVTFTSIIHLYSVCGQ 343

Query: 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402
            +   +  +MMI  G++ +   Y AL+ ++A  G    A    N ++   F+P + S T 
Sbjct: 344 VENCEAAFNMMIAEGLKPNIVSYNALIGAYAARGMDNEAHLFFNEIKQNGFRPDIVSYTS 403

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           L+ AYG++  P +AR  FD M R   KP+     ++I AYG   LL  A+ +L E+E++G
Sbjct: 404 LLNAYGRSQKPHKARQIFDRMKRNKLKPNLVSYNALIDAYGSNGLLADAIKILREMEQEG 463

Query: 463 FEPGPATYTVLVDWLGR 479
            +P   +   L+   GR
Sbjct: 464 IQPNVVSICTLLAACGR 480



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 84/390 (21%), Positives = 160/390 (41%), Gaps = 66/390 (16%)

Query: 199 LSLEKEEDPSPLLAEW-------------KELLQPSRIDWINLLDRLREQNTQLYFKVAE 245
           L+L  ++D   LL  W             KEL Q   I+  N              +V  
Sbjct: 94  LNLSDDDDVDGLLNRWVGRFARKNFPFLIKELTQRGSIEHCN--------------RVFR 139

Query: 246 LVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKA 305
            + ++++++     Y+ +I  HA+ N  + A  +  +M E    PD+ T   +++ + +A
Sbjct: 140 WLKNQKNYRARNDIYNMMIRLHARHNRTDQARGLFFEMQEWRCKPDVETYNAIINAHGRA 199

Query: 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE---RSE 362
           G    A    + +      P +  YN++I A  ++G  K  +++   M  +G+     + 
Sbjct: 200 GQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTENGVGPDLVTH 259

Query: 363 EIYLALLRSFAQCGD-------VRG-------------------------AGQITNIMR- 389
            I L+  +S AQ          ++G                         A +I N MR 
Sbjct: 260 NIILSAFKSGAQYSKALSYFELMKGTHIRPDTTTLNIVIHCLVKLRQYDKAIEIFNSMRE 319

Query: 390 -IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLL 448
              E  P + + T ++  Y   G  +   + F+ MI  G KP+     ++I AY  + + 
Sbjct: 320 KKSECTPDVVTFTSIIHLYSVCGQVENCEAAFNMMIAEGLKPNIVSYNALIGAYAARGMD 379

Query: 449 DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSL 508
           ++A     E++++GF P   +YT L++  GR Q  ++A Q+  ++      P      +L
Sbjct: 380 NEAHLFFNEIKQNGFRPDIVSYTSLLNAYGRSQKPHKARQIFDRMKRNKLKPNLVSYNAL 439

Query: 509 CDMYARAGIEKKALQALGFLEAKKEQMGPD 538
            D Y   G+   A++ L   E ++E + P+
Sbjct: 440 IDAYGSNGLLADAIKILR--EMEQEGIQPN 467



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 138/339 (40%), Gaps = 6/339 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  ++ +I  ++    +E+ E     M   G+ P+IV+   L+  Y+  G  + A   F
Sbjct: 327 DVVTFTSIIHLYSVCGQVENCEAAFNMMIAEGLKPNIVSYNALIGAYAARGMDNEAHLFF 386

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             ++ +GF+PD   Y S++ AY  + +P     + D M  + ++ +   Y AL+ ++   
Sbjct: 387 NEIKQNGFRPDIVSYTSLLNAYGRSQKPHKARQIFDRMKRNKLKPNLVSYNALIDAYGSN 446

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A +I   M  E  QP + S   L+ A G+     +  +        G K +    
Sbjct: 447 GLLADAIKILREMEQEGIQPNVVSICTLLAACGRCSRKVKIDTVLTAAEMRGIKLNTVAY 506

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            + I +       DKA+ L   + K   +    TYTVL+    ++    EA   + +I  
Sbjct: 507 NAAIGSCMNVGEYDKAIGLYKSMRKKKIKTDSVTYTVLISGCCKMSKYGEALSFMEEIMH 566

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFL 553
           L      ++  S    Y++ G   +A      +  K     PD   +  +++   A    
Sbjct: 567 LKLPLSKEVYSSAICAYSKQGQIVEAESTFNLM--KSSGCYPDVVTYTAMLDAYNAAENW 624

Query: 554 QDAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQPTR 592
           + A  +   MEA           AL+ S  FN+  QP R
Sbjct: 625 EKAYALFEEMEASSIKLDTIACAALMRS--FNKGGQPGR 661



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 114/261 (43%), Gaps = 37/261 (14%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           E  + N+  Y+ LI A+A      +A     ++ +NG  PDIV+ T L++ Y ++    +
Sbjct: 357 EGLKPNIVSYNALIGAYAARGMDNEAHLFFNEIKQNGFRPDIVSYTSLLNAYGRSQKPHK 416

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAG-----------------QPKLGMSL---- 349
           A++ F+ ++ +  +P+   YN++I AY + G                 QP + +S+    
Sbjct: 417 ARQIFDRMKRNKLKPNLVSYNALIDAYGSNGLLADAIKILREMEQEGIQPNV-VSICTLL 475

Query: 350 -----------VDMMITS----GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
                      +D ++T+    GI+ +   Y A + S    G+   A  +   MR ++ +
Sbjct: 476 AACGRCSRKVKIDTVLTAAEMRGIKLNTVAYNAAIGSCMNVGEYDKAIGLYKSMRKKKIK 535

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
               + T+L+    +     +A S  + ++ L         +S I AY K+  + +A + 
Sbjct: 536 TDSVTYTVLISGCCKMSKYGEALSFMEEIMHLKLPLSKEVYSSAICAYSKQGQIVEAEST 595

Query: 455 LLELEKDGFEPGPATYTVLVD 475
              ++  G  P   TYT ++D
Sbjct: 596 FNLMKSSGCYPDVVTYTAMLD 616



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 97/218 (44%), Gaps = 14/218 (6%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS  I A++K+  + +AE     M  +G  PD+VT T ++  Y+ A N ++A   FE + 
Sbjct: 576 YSSAICAYSKQGQIVEAESTFNLMKSSGCYPDVVTYTAMLDAYNAAENWEKAYALFEEME 635

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           +   + D     +++ ++   GQP   +SL + M    I  S+ I+  ++ + +   D R
Sbjct: 636 ASSIKLDTIACAALMRSFNKGGQPGRVLSLAESMREKEIPFSDTIFFEMVSACSILQDWR 695

Query: 380 GAGQITNIMRIEEFQPTLESCTL--LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
            A  +  I  IE   P + S  L   + + G++G  +     F  M+  G   +    + 
Sbjct: 696 TA--VDMIKYIEPSLPVISSGCLNQFLHSLGKSGKIETMLKLFFKMLASGADVNLNTYSI 753

Query: 438 MIAAYGKKNLLD-----KALNLLLELEKDGFEPGPATY 470
           ++     KNLL      K L +L  +E  G  P    Y
Sbjct: 754 LL-----KNLLSSGNWRKYLEVLQWMEDAGIHPSKEMY 786


>gi|297797161|ref|XP_002866465.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312300|gb|EFH42724.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 977

 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 139/350 (39%), Gaps = 41/350 (11%)

Query: 258 RDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFES 317
           + Y+ LID   K+  LEDA+ +L +MN  G+  D V  ++L+    K  N D A      
Sbjct: 281 QSYNLLIDGLCKQKRLEDAKSLLVEMNSVGLFADNVAYSILIDGLLKGRNADAANGLVHE 340

Query: 318 LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF----- 372
           + SHGF  D  +Y+  I      G  +   +L D MIT G+      Y +L+  F     
Sbjct: 341 MVSHGFSIDPMMYDYFICVMSKEGAMEKAKALFDGMITFGVTPGARAYASLIEGFFREKN 400

Query: 373 ------------------------------AQCGDVRGAGQITNIMRIEEFQPTLESCTL 402
                                            GD+ GA  I   M     +P +   T 
Sbjct: 401 VRKGYELLVEIKKRNIVISPYTYGTAVKGMCSSGDLDGAYNIVKEMGASGCRPNVVIYTT 460

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           L++ + Q      A      M   G  PD  C  S+I    K   +D+A + LLE+ ++G
Sbjct: 461 LIKTFLQKSRFGDAVRVLKEMREQGIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVENG 520

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522
           F+P   TY   +           A++ + ++ E G  P   +   L + Y + G   K +
Sbjct: 521 FKPDAFTYGAFISGYIEAGEFASADKYVKEMLECGVIPNKVLCTGLINEYCKKG---KVI 577

Query: 523 QALGFLEAKKEQMGPDD---FERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
           +A     +  EQ    D   +  ++NGL+  G + DA+ +   M  +G A
Sbjct: 578 EACSAFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIA 627



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/321 (22%), Positives = 139/321 (43%), Gaps = 21/321 (6%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E+    + + Y+ L++   K   + DAE I  +M   GI PD+ +   L+  +SK GN
Sbjct: 586 MVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGN 645

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           + +A   F+ +   G   +  +YN ++  +  +G+ +    L+D M   G   +   Y  
Sbjct: 646 MQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCT 705

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++  + + GD+  A Q+ + M+++   P     T LV+   +  D ++A + F+      
Sbjct: 706 IIDGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFE------ 759

Query: 428 HKPDDRCTASM---------IAAYGKKNLLDKALNLLLELEKDGF-EPGPATYTVLVDWL 477
              +  C +S          +  +GK  L    +N L++   D F +P   TY +++D+L
Sbjct: 760 -TNEKGCASSSAPFNALINWVFKFGKTELTTDMINRLMDGSFDKFGKPNDVTYNIMIDYL 818

Query: 478 GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP 537
            +   +  A++L   + +    P      SL + Y + G   +      F E     + P
Sbjct: 819 CKEGNLEAAKELFHHMQKANLMPTVITYTSLLNGYDKMGRRSEMFSV--FDEVIAAGIEP 876

Query: 538 DD--FERIINGLLAGGFLQDA 556
           D+  +  IIN  L  G    A
Sbjct: 877 DNIMYSVIINAFLKEGMTTKA 897



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 69/320 (21%), Positives = 127/320 (39%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y   +        L+ A  I+K+M  +G  P++V  T L+  + +      A    + +R
Sbjct: 423 YGTAVKGMCSSGDLDGAYNIVKEMGASGCRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMR 482

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  PD   YNS+I+    A +     S +  M+ +G +     Y A +  + + G+  
Sbjct: 483 EQGIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFISGYIEAGEFA 542

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A +    M      P    CT L+  Y + G   +A S F  M+  G   D +    ++
Sbjct: 543 SADKYVKEMLECGVIPNKVLCTGLINEYCKKGKVIEACSAFRSMVEQGILGDAKTYTVLM 602

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
               K   ++ A  +  E+   G  P   +Y  L+D   +L  + +A  +  ++ + G  
Sbjct: 603 NGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLT 662

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
               I   L   + R+G  +KA + L  +  K        +  II+G    G L +A ++
Sbjct: 663 SNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQL 722

Query: 560 HGLMEAQGFAASERLKVALI 579
              M+ +G      +   L+
Sbjct: 723 FDEMKLKGLVPDSFVYTTLV 742



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 121/262 (46%), Gaps = 10/262 (3%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +S + F  N   Y  +ID + K   L +A ++  +M   G+VPD    T LV    +  +
Sbjct: 691 MSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTTLVDGCCRLND 750

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER----SEE 363
           ++RA   FE+    G       +N++I      G+ +L   +++ ++    ++    ++ 
Sbjct: 751 VERAITIFET-NEKGCASSSAPFNALINWVFKFGKTELTTDMINRLMDGSFDKFGKPNDV 809

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
            Y  ++    + G++  A ++ + M+     PT+ + T L+  Y + G   +  S FD +
Sbjct: 810 TYNIMIDYLCKEGNLEAAKELFHHMQKANLMPTVITYTSLLNGYDKMGRRSEMFSVFDEV 869

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL-----EKDGFEPGPATYTVLVDWLG 478
           I  G +PD+   + +I A+ K+ +  KAL LL ++       DG +   +T   L+    
Sbjct: 870 IAAGIEPDNIMYSVIINAFLKEGMTTKALVLLDQMFAKNAVDDGCKLSISTCRALLSGFA 929

Query: 479 RLQLINEAEQLLGKISELGEAP 500
           ++  +  AE+++  +  L   P
Sbjct: 930 KVGEMEVAEKVVENMVRLKYIP 951


>gi|356573733|ref|XP_003555011.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
           mitochondrial-like [Glycine max]
          Length = 752

 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 144/307 (46%), Gaps = 7/307 (2%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           + +   Y+ LI     +     A  + + M + G   D  T  +++   +K+G LD A +
Sbjct: 191 KVDTETYNSLITLFLNKGLPYKAFEMYESMEKAGCSLDGSTYELMIPNLAKSGRLDAAFK 250

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            F+ ++  GF+P   V+ S++ +   AG+    M +   M   G +    IY++L+ S+ 
Sbjct: 251 LFQEMKVRGFRPGLNVFASLVDSMGKAGRLDSAMKVYMEMRGYGYKPPPTIYVSLIESYV 310

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           + G +  A ++ + MR+  F+P     TL++E++ ++G  + A S F  M + G  P   
Sbjct: 311 KSGKLETALRLWDEMRMAGFRPNFGLYTLIIESHAKSGKLEIAMSTFLDMEKAGFLPTPS 370

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
             A ++  +     +D A+ L   +   G  PG +TYTVL+  L   +L++ A ++L ++
Sbjct: 371 TYACLLEMHAASGQIDPAMKLYNSMTNAGLRPGLSTYTVLLTLLANKKLVDVAAKILLEM 430

Query: 494 SELGEAPPFKIQVSLCDM---YARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAG 550
             +G    + + V+  D+   Y + G    AL+ L F+ +   +       ++    +  
Sbjct: 431 KAMG----YSVDVTASDILMVYIKEGSVDLALRWLRFMGSSGIRTNNFIIRQLFESCMKS 486

Query: 551 GFLQDAQ 557
           G  + A+
Sbjct: 487 GLFESAK 493



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/273 (22%), Positives = 121/273 (44%)

Query: 298 LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG 357
           ++   +KA  L+ +   F+ + + G + D + YNS+I  ++N G P     + + M  +G
Sbjct: 165 VIRYLAKAEKLEVSFCCFKKILNAGCKVDTETYNSLITLFLNKGLPYKAFEMYESMEKAG 224

Query: 358 IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
                  Y  ++ + A+ G +  A ++   M++  F+P L     LV++ G+AG  D A 
Sbjct: 225 CSLDGSTYELMIPNLAKSGRLDAAFKLFQEMKVRGFRPGLNVFASLVDSMGKAGRLDSAM 284

Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
             +  M   G+KP      S+I +Y K   L+ AL L  E+   GF P    YT++++  
Sbjct: 285 KVYMEMRGYGYKPPPTIYVSLIESYVKSGKLETALRLWDEMRMAGFRPNFGLYTLIIESH 344

Query: 478 GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP 537
            +   +  A      + + G  P       L +M+A +G    A++    +     + G 
Sbjct: 345 AKSGKLEIAMSTFLDMEKAGFLPTPSTYACLLEMHAASGQIDPAMKLYNSMTNAGLRPGL 404

Query: 538 DDFERIINGLLAGGFLQDAQRVHGLMEAQGFAA 570
             +  ++  L     +  A ++   M+A G++ 
Sbjct: 405 STYTVLLTLLANKKLVDVAAKILLEMKAMGYSV 437



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 125/298 (41%), Gaps = 6/298 (2%)

Query: 220 PSRIDWINLLDRLRE----QNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLED 275
           PS   ++ L D L +    +  QL F   E+V       +     +++I   AK   LE 
Sbjct: 120 PSDDCYVMLFDGLNQKRDFEGIQLLFD--EMVGDSADGVSLFAACNRVIRYLAKAEKLEV 177

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           +    KK+   G   D  T   L+ ++   G   +A E +ES+   G   D   Y  MI 
Sbjct: 178 SFCCFKKILNAGCKVDTETYNSLITLFLNKGLPYKAFEMYESMEKAGCSLDGSTYELMIP 237

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
               +G+      L   M   G      ++ +L+ S  + G +  A ++   MR   ++P
Sbjct: 238 NLAKSGRLDAAFKLFQEMKVRGFRPGLNVFASLVDSMGKAGRLDSAMKVYMEMRGYGYKP 297

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
                  L+E+Y ++G  + A   +D M   G +P+      +I ++ K   L+ A++  
Sbjct: 298 PPTIYVSLIESYVKSGKLETALRLWDEMRMAGFRPNFGLYTLIIESHAKSGKLEIAMSTF 357

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
           L++EK GF P P+TY  L++       I+ A +L   ++  G  P       L  + A
Sbjct: 358 LDMEKAGFLPTPSTYACLLEMHAASGQIDPAMKLYNSMTNAGLRPGLSTYTVLLTLLA 415



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 95/211 (45%), Gaps = 3/211 (1%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F+  +  ++ L+D+  K   L+ A ++  +M   G  P       L+  Y K+G L+ A 
Sbjct: 260 FRPGLNVFASLVDSMGKAGRLDSAMKVYMEMRGYGYKPPPTIYVSLIESYVKSGKLETAL 319

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
             ++ +R  GF+P+  +Y  +I ++  +G+ ++ MS    M  +G   +   Y  LL   
Sbjct: 320 RLWDEMRMAGFRPNFGLYTLIIESHAKSGKLEIAMSTFLDMEKAGFLPTPSTYACLLEMH 379

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
           A  G +  A ++ N M     +P L + T+L+         D A      M  +G+  D 
Sbjct: 380 AASGQIDPAMKLYNSMTNAGLRPGLSTYTVLLTLLANKKLVDVAAKILLEMKAMGYSVD- 438

Query: 433 RCTAS-MIAAYGKKNLLDKALNLLLELEKDG 462
             TAS ++  Y K+  +D AL  L  +   G
Sbjct: 439 -VTASDILMVYIKEGSVDLALRWLRFMGSSG 468



 Score = 46.2 bits (108), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 29/129 (22%), Positives = 58/129 (44%), Gaps = 1/129 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + +  F      Y+ L++ HA    ++ A ++   M   G+ P + T TVL+ + +    
Sbjct: 360 MEKAGFLPTPSTYACLLEMHAASGQIDPAMKLYNSMTNAGLRPGLSTYTVLLTLLANKKL 419

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D A +    +++ G+  D    + ++M Y+  G   L +  +  M +SGI  +  I   
Sbjct: 420 VDVAAKILLEMKAMGYSVDVTA-SDILMVYIKEGSVDLALRWLRFMGSSGIRTNNFIIRQ 478

Query: 368 LLRSFAQCG 376
           L  S  + G
Sbjct: 479 LFESCMKSG 487



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 75/186 (40%)

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
             +C  ++    +A   + +   F  ++  G K D     S+I  +  K L  KA  +  
Sbjct: 159 FAACNRVIRYLAKAEKLEVSFCCFKKILNAGCKVDTETYNSLITLFLNKGLPYKAFEMYE 218

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
            +EK G     +TY +++  L +   ++ A +L  ++   G  P   +  SL D   +AG
Sbjct: 219 SMEKAGCSLDGSTYELMIPNLAKSGRLDAAFKLFQEMKVRGFRPGLNVFASLVDSMGKAG 278

Query: 517 IEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKV 576
               A++    +     +  P  +  +I   +  G L+ A R+   M   GF  +  L  
Sbjct: 279 RLDSAMKVYMEMRGYGYKPPPTIYVSLIESYVKSGKLETALRLWDEMRMAGFRPNFGLYT 338

Query: 577 ALISSQ 582
            +I S 
Sbjct: 339 LIIESH 344


>gi|356529495|ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779660 [Glycine max]
          Length = 1205

 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 146/323 (45%), Gaps = 4/323 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L  + FQ N   Y  LI+   K      A ++L+K++     P++V  + ++    K   
Sbjct: 155 LLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDALCKYQL 214

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A   F  +   G   D   Y+++I  +   G+ K  + L++ M+   I  +   Y  
Sbjct: 215 VSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNI 274

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+ +  + G V+ A  +  +M     +P + + + L++ Y    +  +A+  F+ M  +G
Sbjct: 275 LVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMG 334

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD      +I  + K  ++D+ALNL  E+ +    PG  TY+ L+D L +   I    
Sbjct: 335 VTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVW 394

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERII--N 545
            L+ ++ + G+        SL D   + G   +A+    F + K + + P+ F   I  +
Sbjct: 395 DLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIAL--FNKMKDQGIRPNTFTFTILLD 452

Query: 546 GLLAGGFLQDAQRVHGLMEAQGF 568
           GL  GG L+DAQ V   +  +G+
Sbjct: 453 GLCKGGRLKDAQEVFQDLLTKGY 475



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 57/257 (22%), Positives = 119/257 (46%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           + P+   +  L+D L ++      K    V+ +   + +V  YS L+D +     ++ A+
Sbjct: 265 INPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQ 324

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
            +   M+  G+ PD+ T T+L++ + K   +D A   F+ +      P    Y+S+I   
Sbjct: 325 HVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGL 384

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
             +G+      L+D M   G   +   Y +L+    + G +  A  + N M+ +  +P  
Sbjct: 385 CKSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNT 444

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
            + T+L++   + G    A+  F  ++  G+  +      MI  + K+ LL++AL +L +
Sbjct: 445 FTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMIDGHCKQGLLEEALTMLSK 504

Query: 458 LEKDGFEPGPATYTVLV 474
           +E +G  P   T+ +++
Sbjct: 505 MEDNGCIPDAVTFEIII 521



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 62/297 (20%), Positives = 121/297 (40%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++K++D+ AK      A  +  ++   GI PD++T  +L++ +   G +         + 
Sbjct: 62  FNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKIL 121

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G+ PD    N++I      GQ K  +   D ++  G + ++  Y  L+    + GD R
Sbjct: 122 KRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTR 181

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++   +     +P +   + +++A  +     +A   F  M   G   D    +++I
Sbjct: 182 AAIKLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLI 241

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             +  +  L +A+ LL E+      P   TY +LVD L +   + EA+ +L  + +    
Sbjct: 242 YGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVK 301

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDA 556
           P      +L D Y      KKA      +           +  +ING      + +A
Sbjct: 302 PDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEA 358



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/256 (21%), Positives = 111/256 (43%), Gaps = 2/256 (0%)

Query: 245 ELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK 304
           E+VL  ++   NV  Y+ L+DA  KE  +++A+ +L  M +  + PD++T + L+  Y  
Sbjct: 259 EMVL--KTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFL 316

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
              + +A+  F ++   G  PD   Y  +I  +         ++L   M    +      
Sbjct: 317 VYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVT 376

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
           Y +L+    + G +     + + M        + + + L++   + G  D+A + F+ M 
Sbjct: 377 YSSLIDGLCKSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALFNKMK 436

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
             G +P+      ++    K   L  A  +  +L   G+     TY V++D   +  L+ 
Sbjct: 437 DQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMIDGHCKQGLLE 496

Query: 485 EAEQLLGKISELGEAP 500
           EA  +L K+ + G  P
Sbjct: 497 EALTMLSKMEDNGCIP 512



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/226 (21%), Positives = 95/226 (42%), Gaps = 5/226 (2%)

Query: 287  GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLG 346
            GI PD+ T  +L++ +   G +         +   G+ PD   + ++I      GQ    
Sbjct: 956  GIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLINGLCLKGQVNKA 1015

Query: 347  MSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA 406
            +   D ++  G + ++  Y  L+    + GD R A ++   +     +P +     +++A
Sbjct: 1016 LHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVMYNTIIDA 1075

Query: 407  YGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG 466
              +     +A   F  M   G   D     ++I  +     L +A+ LL ++      P 
Sbjct: 1076 LCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKTINPN 1135

Query: 467  PATYTVLVDWLGR--LQLINEAEQLLGKISELG---EAPPFKIQVS 507
              TY +LVD L +    L++E+  +L K+ + G    A  F+I +S
Sbjct: 1136 VRTYNILVDALCKEGKDLLDESLSMLSKMEDNGCKANAVTFEIIIS 1181



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 78/359 (21%), Positives = 131/359 (36%), Gaps = 19/359 (5%)

Query: 237 TQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTST 296
           T+L F V+  + +  SF  N   +S           ++DA     +M      P I+   
Sbjct: 5   TRLRFSVSLSIPNFSSFLQN-SSHSHFHSQPPSIQNVDDAVSQFNRMLCMRHTPPIIQFN 63

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
            ++  ++K  +   A      L   G QPD    N +I  + + GQ   G S++  ++  
Sbjct: 64  KILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKR 123

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
           G          L++     G V+ A    + +  + FQ    S   L+    + GD   A
Sbjct: 124 GYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAA 183

Query: 417 RSNFDYMIRLGHKPDDRCT-------ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPAT 469
                  I+L  K D R T       +++I A  K  L+ +A  L  E+   G      T
Sbjct: 184 -------IKLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVT 236

Query: 470 YTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLE 529
           Y+ L+        + EA  LL ++      P       L D   + G  K+A   L  + 
Sbjct: 237 YSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVM- 295

Query: 530 AKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNR 586
             K  + PD   +  +++G      ++ AQ V   M   G          LI+    N+
Sbjct: 296 -LKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNK 353



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/201 (20%), Positives = 91/201 (45%), Gaps = 2/201 (0%)

Query: 279  ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338
            IL K+ + G  PD +T T L++     G +++A    + L + GFQ ++  Y ++I    
Sbjct: 983  ILAKILKRGYHPDTITFTTLINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVC 1042

Query: 339  NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398
              G  +  + L+  +     +    +Y  ++ +  +   V  A  +   M ++     + 
Sbjct: 1043 KIGDTRAAIKLLRKIDGRLTKPDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVV 1102

Query: 399  SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGK--KNLLDKALNLLL 456
            +   L+  +   G   +A    + M+     P+ R    ++ A  K  K+LLD++L++L 
Sbjct: 1103 TYNTLIYGFCIVGKLKEAIGLLNKMVLKTINPNVRTYNILVDALCKEGKDLLDESLSMLS 1162

Query: 457  ELEKDGFEPGPATYTVLVDWL 477
            ++E +G +    T+ +++  L
Sbjct: 1163 KMEDNGCKANAVTFEIIISAL 1183



 Score = 47.0 bits (110), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 67/161 (41%), Gaps = 6/161 (3%)

Query: 219  QPSRIDWINLLDRL---REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLED 275
             P  I +  L++ L    + N  L+F    L    + FQ N   Y  LI+   K      
Sbjct: 993  HPDTITFTTLINGLCLKGQVNKALHFHDKLLA---QGFQLNQVSYGTLINGVCKIGDTRA 1049

Query: 276  AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
            A ++L+K++     PD+V    ++    K   + +A   F  +   G   D   YN++I 
Sbjct: 1050 AIKLLRKIDGRLTKPDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIY 1109

Query: 336  AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
             +   G+ K  + L++ M+   I  +   Y  L+ +  + G
Sbjct: 1110 GFCIVGKLKEAIGLLNKMVLKTINPNVRTYNILVDALCKEG 1150



 Score = 42.4 bits (98), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 40/90 (44%)

Query: 260  YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
            Y+ +IDA  K   +  A  +  +MN  GI  D+VT   L++ +   G L  A      + 
Sbjct: 1069 YNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMV 1128

Query: 320  SHGFQPDKKVYNSMIMAYVNAGQPKLGMSL 349
                 P+ + YN ++ A    G+  L  SL
Sbjct: 1129 LKTINPNVRTYNILVDALCKEGKDLLDESL 1158


>gi|297830178|ref|XP_002882971.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328811|gb|EFH59230.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 642

 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 100/412 (24%), Positives = 173/412 (41%), Gaps = 23/412 (5%)

Query: 170 EKIHE-RGEMILPEEPKPITGKCKLITDKILSLEKEEDPSPLLAEWKE-LLQPSRIDWIN 227
           EK+HE   EM    +  P T     +      L + +    L  E K+  +QP+   +  
Sbjct: 214 EKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTT 273

Query: 228 LLDRLREQNTQLYFKVAELVLSEESFQ--------TNVRDYSKLIDAHAKENCLEDAERI 279
           LL         +YFKV ++  + + F+          V  Y++LI    K   +E+A  +
Sbjct: 274 LLG--------IYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVEEAYDL 325

Query: 280 LKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339
            K M  +G+ PD+V    L+++  K G L+     F  + +    P    YN++I A   
Sbjct: 326 YKNMLTDGLTPDVVFLNNLMNILGKVGRLEELTNVFNEMGTWRCTPTVVSYNTVIKALFE 385

Query: 340 AGQPKLGMS-LVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398
           +  P   +S   D M   G+  SE  Y  L+  + +   V  A  +   M  + F P   
Sbjct: 386 SKAPVSEVSSWFDKMKADGVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPA 445

Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
           +   L+ A G+A   + A   F  +         R  A MI  +GK   L +A++L  E+
Sbjct: 446 AYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEM 505

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
           +  G  P    Y  L+  + +  ++NEA  LL K+ E G          + + +AR G+ 
Sbjct: 506 KNQGSGPDVYAYNALMSGMVKAGMVNEANSLLRKMEENGCTADINSHNIILNGFARTGVP 565

Query: 519 KKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
           ++A++   F   K   + PD   +  ++      G  ++A R+   M+ +GF
Sbjct: 566 RRAIEM--FETMKHCGIKPDGVTYNTLLGCFAHAGMFEEAARLMREMKDKGF 615



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 99/221 (44%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS LID + K N +E A  +L++M+E G  P       L++   KA   + A E F+ L+
Sbjct: 412 YSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELK 471

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
            +      +VY  MI  +   G+    + L + M   G       Y AL+    + G V 
Sbjct: 472 ENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMVN 531

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  +   M        + S  +++  + + G P +A   F+ M   G KPD     +++
Sbjct: 532 EANSLLRKMEENGCTADINSHNIILNGFARTGVPRRAIEMFETMKHCGIKPDGVTYNTLL 591

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
             +    + ++A  L+ E++  GFE    TY+ ++D +G +
Sbjct: 592 GCFAHAGMFEEAARLMREMKDKGFEYDAITYSSILDAVGNM 632



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 60/114 (52%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ L+    K   + +A  +L+KM ENG   DI +  ++++ +++ G   RA E F
Sbjct: 513 DVYAYNALMSGMVKAGMVNEANSLLRKMEENGCTADINSHNIILNGFARTGVPRRAIEMF 572

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
           E+++  G +PD   YN+++  + +AG  +    L+  M   G E     Y ++L
Sbjct: 573 ETMKHCGIKPDGVTYNTLLGCFAHAGMFEEAARLMREMKDKGFEYDAITYSSIL 626



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 67/162 (41%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L E     + R Y+ +I    K   L +A  +  +M   G  PD+     L+    KAG 
Sbjct: 470 LKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGM 529

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           ++ A      +  +G   D   +N ++  +   G P+  + + + M   GI+     Y  
Sbjct: 530 VNEANSLLRKMEENGCTADINSHNIILNGFARTGVPRRAIEMFETMKHCGIKPDGVTYNT 589

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409
           LL  FA  G    A ++   M+ + F+    + + +++A G 
Sbjct: 590 LLGCFAHAGMFEEAARLMREMKDKGFEYDAITYSSILDAVGN 631



 Score = 39.3 bits (90), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 22/97 (22%), Positives = 43/97 (44%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E     ++  ++ +++  A+      A  + + M   GI PD VT   L+  ++ AG 
Sbjct: 540 MEENGCTADINSHNIILNGFARTGVPRRAIEMFETMKHCGIKPDGVTYNTLLGCFAHAGM 599

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPK 344
            + A      ++  GF+ D   Y+S++ A  N    K
Sbjct: 600 FEEAARLMREMKDKGFEYDAITYSSILDAVGNMDHEK 636


>gi|357141282|ref|XP_003572167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Brachypodium distachyon]
          Length = 686

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 124/261 (47%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI+   K   + +A  ++ +M +NG+ P + T   L+  Y +AG L++       ++
Sbjct: 401 YNALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQ 460

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +P+   Y S++ A+   G+    ++++D M    +    ++Y A++ ++ +CG   
Sbjct: 461 EKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTD 520

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  +   M+     P++ +  LL++   +     +A    D +   G  PD     ++I
Sbjct: 521 QAFMLAEKMKSSGVPPSIVTYNLLIKGLCKQSQISEAEELLDSLRNYGLAPDVISYNTLI 580

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
           +A   ++  D+AL L  E+ K G +P P TY +L   LG    ++E E L  ++ +    
Sbjct: 581 SACCYRSNTDRALELEKEMWKCGIKPSPRTYRMLFSSLGGAGRVHEMENLYQQMLDKDVV 640

Query: 500 PPFKIQVSLCDMYARAGIEKK 520
           P   I   + D YA+ G E K
Sbjct: 641 PCSGIYNIMVDAYAKCGEESK 661



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/324 (22%), Positives = 137/324 (42%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E++   N   Y+ +ID H K+  LE   R+  +M  +G+ P+++T  VL+    +AG 
Sbjct: 214 MPEKAVVPNHITYNTMIDGHIKKGDLESGFRLWSQMLRHGLKPNVITYNVLLSGLCRAGR 273

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +       + + S    PD   Y+ +   +   G  +  +SL +  +  G++        
Sbjct: 274 MGETAAVLDEMASRKMVPDGFTYSILFDGHSRTGDSQTMLSLFEESVKKGVKIGAYTCSI 333

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           LL    + G +  A ++   +       T      L+  Y Q GD + A S F  M    
Sbjct: 334 LLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGDLEGAFSIFQQMKSRL 393

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            +PD     ++I   GK   + +A +L++E+EK+G  P   T+  L+D  GR   + +  
Sbjct: 394 IRPDHITYNALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCF 453

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
            +L  + E G  P      S+ + + + G   +A+  L  +  K    G   +  II+  
Sbjct: 454 IILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGAQVYNAIIDAY 513

Query: 548 LAGGFLQDAQRVHGLMEAQGFAAS 571
           +  G    A  +   M++ G   S
Sbjct: 514 IECGSTDQAFMLAEKMKSSGVPPS 537



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 66/336 (19%), Positives = 135/336 (40%), Gaps = 36/336 (10%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGI-VPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318
           ++K + A      L++A  +L++M  +G   P+  +  V++    KAG    A + F+ +
Sbjct: 155 WNKAVQACVVAGDLDEAVGMLRRMGCDGAPAPNAFSYNVVIAGLWKAGTDCDAVKLFDEM 214

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
                 P+   YN+MI  ++  G  + G  L   M+  G++ +   Y  LL    + G +
Sbjct: 215 PEKAVVPNHITYNTMIDGHIKKGDLESGFRLWSQMLRHGLKPNVITYNVLLSGLCRAGRM 274

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA-- 436
                + + M   +  P   + ++L + + + GD     S F+  ++ G K      +  
Sbjct: 275 GETAAVLDEMASRKMVPDGFTYSILFDGHSRTGDSQTMLSLFEESVKKGVKIGAYTCSIL 334

Query: 437 ---------------------------------SMIAAYGKKNLLDKALNLLLELEKDGF 463
                                            ++I  Y +   L+ A ++  +++    
Sbjct: 335 LNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGDLEGAFSIFQQMKSRLI 394

Query: 464 EPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
            P   TY  L++ LG+++ I EA  L+ ++ + G  P  +   +L D Y RAG  +K   
Sbjct: 395 RPDHITYNALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFI 454

Query: 524 ALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
            L  ++ K  +     +  I+N     G + +A  +
Sbjct: 455 ILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAI 490


>gi|147778635|emb|CAN76113.1| hypothetical protein VITISV_005528 [Vitis vinifera]
          Length = 466

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 157/345 (45%), Gaps = 15/345 (4%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
            + ++R Y+ ++ +  ++  LE A+++L +M+  GI  +  T   LV  Y +AG L+   
Sbjct: 108 LKLDLRVYNVMLRSCLRKGLLELADKVLAEMDALGIGRNRATYEALVDYYGRAGRLNDVW 167

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
                +   GF PD  VY+ +I  Y + G  K  M +V  +   G+   + IY +++ +F
Sbjct: 168 AVIGEMSRDGFGPDSFVYSKVIGVYRDNGMWKKAMEIVREIREMGVSLDKRIYNSIIDTF 227

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            +CG++  A ++   M+ E  +P + +   L++ + +AGD  +A   F  M   G  PD 
Sbjct: 228 GKCGELSEALEVFEKMQEEGVKPDIMTWNSLIQWHCKAGDVGKALELFSKMQEEGLYPDP 287

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
           +   ++I+  G++   D        ++  G +   A Y +LVD  G+       E+ +  
Sbjct: 288 KIFITIISRLGEQGKWDVIKRNFENMKCRGHQRSGAIYAILVDIYGQYGRFQGPEECISA 347

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL-LAGG 551
           +   G  P   +   L + YA+ G+ ++ ++ L  +E +  +        +IN   +AG 
Sbjct: 348 LKSEGIQPSASMFCVLANAYAQQGLCEQTVKVLQLMETEGIEPNLIMLNMLINAFGIAGR 407

Query: 552 FLQDAQRVHGL----------MEAQGFA----ASERLKVALISSQ 582
            L+     H +          ME+ G      A E L+ AL+  Q
Sbjct: 408 HLEALSVYHHIKDTVPEIYEEMESAGCTPDRKAREMLQTALLVLQ 452



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 100/211 (47%), Gaps = 2/211 (0%)

Query: 235 QNTQLYFKVAELV--LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDI 292
           ++  ++ K  E+V  + E     + R Y+ +ID   K   L +A  + +KM E G+ PDI
Sbjct: 193 RDNGMWKKAMEIVREIREMGVSLDKRIYNSIIDTFGKCGELSEALEVFEKMQEEGVKPDI 252

Query: 293 VTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDM 352
           +T   L+  + KAG++ +A E F  ++  G  PD K++ ++I      G+  +     + 
Sbjct: 253 MTWNSLIQWHCKAGDVGKALELFSKMQEEGLYPDPKIFITIISRLGEQGKWDVIKRNFEN 312

Query: 353 MITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGD 412
           M   G +RS  IY  L+  + Q G  +G  +  + ++ E  QP+     +L  AY Q G 
Sbjct: 313 MKCRGHQRSGAIYAILVDIYGQYGRFQGPEECISALKSEGIQPSASMFCVLANAYAQQGL 372

Query: 413 PDQARSNFDYMIRLGHKPDDRCTASMIAAYG 443
            +Q       M   G +P+      +I A+G
Sbjct: 373 CEQTVKVLQLMETEGIEPNLIMLNMLINAFG 403



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 101/212 (47%)

Query: 356 SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ 415
           +G E S  +Y A +R   + GDV  A ++   M    F  +L S T ++EA G  G   +
Sbjct: 36  NGEELSGVVYNARIRESCRVGDVDKAMKLLAQMEALGFSLSLGSYTTVIEALGSVGRTLE 95

Query: 416 ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
           A + F  M+ LG K D R    M+ +  +K LL+ A  +L E++  G     ATY  LVD
Sbjct: 96  AEAIFREMVHLGLKLDLRVYNVMLRSCLRKGLLELADKVLAEMDALGIGRNRATYEALVD 155

Query: 476 WLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQM 535
           + GR   +N+   ++G++S  G  P   +   +  +Y   G+ KKA++ +  +      +
Sbjct: 156 YYGRAGRLNDVWAVIGEMSRDGFGPDSFVYSKVIGVYRDNGMWKKAMEIVREIREMGVSL 215

Query: 536 GPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
               +  II+     G L +A  V   M+ +G
Sbjct: 216 DKRIYNSIIDTFGKCGELSEALEVFEKMQEEG 247



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 125/282 (44%), Gaps = 10/282 (3%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           +  LI+ H K       E +   ++ENG     V     +    + G++D+A +    + 
Sbjct: 12  FPTLINTHMKNKHQVSVEEV--SISENGEELSGVVYNARIRESCRVGDVDKAMKLLAQME 69

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + GF      Y ++I A  + G+     ++   M+  G++    +Y  +LRS  + G + 
Sbjct: 70  ALGFSLSLGSYTTVIEALGSVGRTLEAEAIFREMVHLGLKLDLRVYNVMLRSCLRKGLLE 129

Query: 380 GAGQI---TNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
            A ++    + + I   + T E+   LV+ YG+AG  +   +    M R G  PD    +
Sbjct: 130 LADKVLAEMDALGIGRNRATYEA---LVDYYGRAGRLNDVWAVIGEMSRDGFGPDSFVYS 186

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
            +I  Y    +  KA+ ++ E+ + G       Y  ++D  G+   ++EA ++  K+ E 
Sbjct: 187 KVIGVYRDNGMWKKAMEIVREIREMGVSLDKRIYNSIIDTFGKCGELSEALEVFEKMQEE 246

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
           G  P      SL   + +AG   KAL+   F + ++E + PD
Sbjct: 247 GVKPDIMTWNSLIQWHCKAGDVGKALEL--FSKMQEEGLYPD 286



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 125/278 (44%), Gaps = 6/278 (2%)

Query: 236 NTQLYFKVAELVLSEESFQTNVRDYSKLI-DAHAKENC----LEDAERILKKMNENGIVP 290
           NT +  K  ++ + E S   N  + S ++ +A  +E+C    ++ A ++L +M   G   
Sbjct: 17  NTHMKNK-HQVSVEEVSISENGEELSGVVYNARIRESCRVGDVDKAMKLLAQMEALGFSL 75

Query: 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV 350
            + + T ++      G    A+  F  +   G + D +VYN M+ + +  G  +L   ++
Sbjct: 76  SLGSYTTVIEALGSVGRTLEAEAIFREMVHLGLKLDLRVYNVMLRSCLRKGLLELADKVL 135

Query: 351 DMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410
             M   GI R+   Y AL+  + + G +     +   M  + F P     + ++  Y   
Sbjct: 136 AEMDALGIGRNRATYEALVDYYGRAGRLNDVWAVIGEMSRDGFGPDSFVYSKVIGVYRDN 195

Query: 411 GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATY 470
           G   +A      +  +G   D R   S+I  +GK   L +AL +  +++++G +P   T+
Sbjct: 196 GMWKKAMEIVREIREMGVSLDKRIYNSIIDTFGKCGELSEALEVFEKMQEEGVKPDIMTW 255

Query: 471 TVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSL 508
             L+ W  +   + +A +L  K+ E G  P  KI +++
Sbjct: 256 NSLIQWHCKAGDVGKALELFSKMQEEGLYPDPKIFITI 293



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 80/176 (45%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + EE  + ++  ++ LI  H K   +  A  +  KM E G+ PD      ++    + G 
Sbjct: 243 MQEEGVKPDIMTWNSLIQWHCKAGDVGKALELFSKMQEEGLYPDPKIFITIISRLGEQGK 302

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            D  K  FE+++  G Q    +Y  ++  Y   G+ +     +  + + GI+ S  ++  
Sbjct: 303 WDVIKRNFENMKCRGHQRSGAIYAILVDIYGQYGRFQGPEECISALKSEGIQPSASMFCV 362

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
           L  ++AQ G      ++  +M  E  +P L    +L+ A+G AG   +A S + ++
Sbjct: 363 LANAYAQQGLCEQTVKVLQLMETEGIEPNLIMLNMLINAFGIAGRHLEALSVYHHI 418



 Score = 43.1 bits (100), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 44/221 (19%), Positives = 85/221 (38%), Gaps = 32/221 (14%)

Query: 154 KIYGLDLSDPKWTEVAEKIHERGEMILPEEPKPIT------GKCKLITDKILSLEK--EE 205
           K+ G+   +  W +  E + E  EM +  + +         GKC  +++ +   EK  EE
Sbjct: 187 KVIGVYRDNGMWKKAMEIVREIREMGVSLDKRIYNSIIDTFGKCGELSEALEVFEKMQEE 246

Query: 206 DPSPLLAEWKELLQ------------------------PSRIDWINLLDRLREQNTQLYF 241
              P +  W  L+Q                        P    +I ++ RL EQ      
Sbjct: 247 GVKPDIMTWNSLIQWHCKAGDVGKALELFSKMQEEGLYPDPKIFITIISRLGEQGKWDVI 306

Query: 242 KVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM 301
           K     +     Q +   Y+ L+D + +    +  E  +  +   GI P      VL + 
Sbjct: 307 KRNFENMKCRGHQRSGAIYAILVDIYGQYGRFQGPEECISALKSEGIQPSASMFCVLANA 366

Query: 302 YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
           Y++ G  ++  +  + + + G +P+  + N +I A+  AG+
Sbjct: 367 YAQQGLCEQTVKVLQLMETEGIEPNLIMLNMLINAFGIAGR 407


>gi|414882130|tpg|DAA59261.1| TPA: hypothetical protein ZEAMMB73_845952 [Zea mays]
          Length = 1603

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 127/283 (44%), Gaps = 2/283 (0%)

Query: 256  NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
             V  Y+ LID + +   LE+A  + ++M E G +P++ T T+L+       +L  A+E F
Sbjct: 1294 TVLTYNILIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVRSLAMAREFF 1353

Query: 316  ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
            + + S G QPD   YN+ I A +  G       L ++++  GI      Y  L+    + 
Sbjct: 1354 DEMLSKGLQPDCFAYNTRICAELILGDIARAFELREVLMLEGISSDTVTYNILIHGLCKT 1413

Query: 376  GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
            G+++ A ++   M     QP   + T L+ A+ + G   +AR  F+ MI  G  P     
Sbjct: 1414 GNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLPSAVTF 1473

Query: 436  ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
              +I AY ++  L  A     ++ ++G EP   TY VL+  L R+     A     ++ E
Sbjct: 1474 TVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLASHHFHEMLE 1533

Query: 496  LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
             G          L D   + G  + A++   + E  +  + PD
Sbjct: 1534 RGLVANKYTYTLLIDGNCKVGNWEDAMRF--YFEMHQNGIHPD 1574



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 68/306 (22%), Positives = 126/306 (41%), Gaps = 19/306 (6%)

Query: 260  YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
            Y+ LI       C++    +  +M   GI+P +VT   ++H   ++G ++ A+  F  +R
Sbjct: 1193 YNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMR 1252

Query: 320  SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
            + G  PD   YNS++  Y  AG  K  + L   +  +G+  +   Y  L+  + + GD+ 
Sbjct: 1253 AMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLE 1312

Query: 380  GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
             A  +   M  +   P + + T+L++          AR  FD M+  G +PD     + I
Sbjct: 1313 EARILKEEMGEQGCLPNVCTYTILMKGSLNVRSLAMAREFFDEMLSKGLQPDCFAYNTRI 1372

Query: 440  AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             A      + +A  L   L  +G      TY +L+  L +   + +A++L  K+   G  
Sbjct: 1373 CAELILGDIARAFELREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQ 1432

Query: 500  PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
            P       L   +   G+ ++A                    +I N +++ G L  A   
Sbjct: 1433 PDCITYTCLIHAHCERGLLREA-------------------RKIFNNMISDGLLPSAVTF 1473

Query: 560  HGLMEA 565
              ++ A
Sbjct: 1474 TVIIHA 1479



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 78/361 (21%), Positives = 136/361 (37%), Gaps = 39/361 (10%)

Query: 245  ELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK 304
            +L +  E     V  Y+ +I    +   +E A+    +M   G++PD++T   L++ Y K
Sbjct: 1213 QLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCK 1272

Query: 305  AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ---------------------- 342
            AGNL  A   F  LR  G  P    YN +I  Y   G                       
Sbjct: 1273 AGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCLPNVCT 1332

Query: 343  -----------PKLGMS--LVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389
                         L M+    D M++ G++     Y   + +    GD+  A ++  ++ 
Sbjct: 1333 YTILMKGSLNVRSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARAFELREVLM 1392

Query: 390  IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD 449
            +E       +  +L+    + G+   A+     M+  G +PD      +I A+ ++ LL 
Sbjct: 1393 LEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLR 1452

Query: 450  KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLC 509
            +A  +   +  DG  P   T+TV++    R   +  A     K+ E G  P       L 
Sbjct: 1453 EARKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLI 1512

Query: 510  DMYARAGIEKKALQALGFLEAKKEQMGPDDFER--IINGLLAGGFLQDAQRVHGLMEAQG 567
                R G  +  L +  F E  +  +  + +    +I+G    G  +DA R +  M   G
Sbjct: 1513 HALCRMG--RTQLASHHFHEMLERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQNG 1570

Query: 568  F 568
             
Sbjct: 1571 I 1571



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 82/185 (44%)

Query: 247  VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
            VL  E   ++   Y+ LI    K   L+DA+ +  KM  NG+ PD +T T L+H + + G
Sbjct: 1390 VLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERG 1449

Query: 307  NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
             L  A++ F ++ S G  P    +  +I AY   G           M+  G+E +E  Y 
Sbjct: 1450 LLREARKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYN 1509

Query: 367  ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
             L+ +  + G  + A    + M          + TLL++   + G+ + A   +  M + 
Sbjct: 1510 VLIHALCRMGRTQLASHHFHEMLERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQN 1569

Query: 427  GHKPD 431
            G  PD
Sbjct: 1570 GIHPD 1574



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 135/341 (39%), Gaps = 20/341 (5%)

Query: 248  LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
            ++      +V+D ++++         +D   + ++M E GI P IVT   L+  + K G 
Sbjct: 1075 MASHGVAPDVKDCNRVLRVLRDAARWDDICAVHEEMLELGIEPSIVTYNTLLDSFLKEGR 1134

Query: 308  LDRAKEAFESL--RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
             D+     + +  R  G  P+   YN +I      G  +    LV+ M  S  + S   Y
Sbjct: 1135 KDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLEEAAELVEGMRLSK-KASSFTY 1193

Query: 366  LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
              L+      G V+    +   M  E   PT+ +   ++    Q+G  + A+  F  M  
Sbjct: 1194 NPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRA 1253

Query: 426  LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
            +G  PD     S++  Y K   L +AL L  +L + G  P   TY +L+D   RL  + E
Sbjct: 1254 MGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEE 1313

Query: 486  AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF---ER 542
            A  L  ++ E G  P       L  M     +   A+    F E   + + PD F    R
Sbjct: 1314 ARILKEEMGEQGCLPNVCTYTIL--MKGSLNVRSLAMAREFFDEMLSKGLQPDCFAYNTR 1371

Query: 543  IINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQT 583
            I   L+ G              A+ F   E L +  ISS T
Sbjct: 1372 ICAELILGDI------------ARAFELREVLMLEGISSDT 1400



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 136/337 (40%), Gaps = 5/337 (1%)

Query: 250  EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNE--NGIVPDIVTSTVLVHMYSKAGN 307
            E   + ++  Y+ L+D+  KE   +    +LK+M    +G +P+ VT  V++   ++ G+
Sbjct: 1112 ELGIEPSIVTYNTLLDSFLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGD 1171

Query: 308  LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            L+ A E  E +R    +     YN +I   +  G  K    L   M   GI  +   Y A
Sbjct: 1172 LEEAAELVEGMRLSK-KASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNA 1230

Query: 368  LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
            ++    Q G V  A      MR     P + +   L+  Y +AG+  +A   F  + R G
Sbjct: 1231 MIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAG 1290

Query: 428  HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
              P       +I  Y +   L++A  L  E+ + G  P   TYT+L+     ++ +  A 
Sbjct: 1291 LAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVRSLAMAR 1350

Query: 488  QLLGKISELGEAPP-FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
            +   ++   G  P  F     +C       I  +A +    L  +        +  +I+G
Sbjct: 1351 EFFDEMLSKGLQPDCFAYNTRICAELILGDI-ARAFELREVLMLEGISSDTVTYNILIHG 1409

Query: 547  LLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQT 583
            L   G L+DA+ +   M + G          LI +  
Sbjct: 1410 LCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHC 1446



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 115/268 (42%), Gaps = 27/268 (10%)

Query: 314  AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            AF  + SHG  PD K  N ++    +A +     ++ + M+  GIE S   Y  LL SF 
Sbjct: 1071 AFREMASHGVAPDVKDCNRVLRVLRDAARWDDICAVHEEMLELGIEPSIVTYNTLLDSFL 1130

Query: 374  QCG------------DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421
            + G            + RG+G + N +          +  +++    + GD ++A    +
Sbjct: 1131 KEGRKDKVAMLLKEMETRGSGCLPNDV----------TYNVVITGLTRKGDLEEAAELVE 1180

Query: 422  YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ 481
             M RL  K        +I     +  + K  +L LE+E +G  P   TY  ++  L +  
Sbjct: 1181 GM-RLSKKASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSG 1239

Query: 482  LINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--D 539
            L+  A+    ++  +G  P      SL + Y +AG  K+AL   G L  ++  + P    
Sbjct: 1240 LVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDL--RRAGLAPTVLT 1297

Query: 540  FERIINGLLAGGFLQDAQRVHGLMEAQG 567
            +  +I+G    G L++A+ +   M  QG
Sbjct: 1298 YNILIDGYCRLGDLEEARILKEEMGEQG 1325



 Score = 46.6 bits (109), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 47/113 (41%)

Query: 260  YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
            ++ +I A+ +   L  A    +KM E G+ P+ +T  VL+H   + G    A   F  + 
Sbjct: 1473 FTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLASHHFHEML 1532

Query: 320  SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
              G   +K  Y  +I      G  +  M     M  +GI      + ALL+ F
Sbjct: 1533 ERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQNGIHPDYLTHKALLKGF 1585


>gi|356554513|ref|XP_003545590.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g25630-like [Glycine max]
          Length = 632

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 151/331 (45%), Gaps = 22/331 (6%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L E   Q ++  Y+ L++A   +   +    I+  + E  + PD +    L++ ++++GN
Sbjct: 98  LIEGGHQPSLATYTTLLNALTTQKYFKPIHSIVSLVEEKQMKPDSIFFNALINAFAESGN 157

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG-IERSEEIYL 366
           ++ AK+  + ++  G +P    YN++I  Y  AG+P   M L+D+M T G ++ + + Y 
Sbjct: 158 MEDAKKVVQKMKESGLKPSACTYNTLIKGYGIAGKPDESMKLLDLMSTEGNVKPNLKTYN 217

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+R+  +  ++  A  +   M     QP + +   +  AY Q G   QA +    M R 
Sbjct: 218 MLIRALCKMENISEAWNVVYKMTASGMQPDVVTFNTIATAYAQNGKTAQAEAMILEMQRN 277

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
             KP++R    +I+ Y ++  + +AL  +  ++  G +P       LV+    +   +  
Sbjct: 278 SLKPNERTCTIIISGYCREGKVQEALRFVYRMKDLGMQPNLIVLNSLVNGFVDMMDRDGV 337

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
           +++L  + E    P      ++ + +++A          GFLE  KE         I N 
Sbjct: 338 DEVLKLMEEFQIRPDVITYSTIMNAWSQA----------GFLEKCKE---------IYNN 378

Query: 547 LLAGGFLQDAQRVHGLMEAQGFAASERLKVA 577
           +L  G   DA     L  A+G+  ++ ++ A
Sbjct: 379 MLKSGVKPDAHAYSIL--AKGYVRAQEMEKA 407



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 145/294 (49%), Gaps = 7/294 (2%)

Query: 242 KVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM 301
           K+ +L+ +E + + N++ Y+ LI A  K   + +A  ++ KM  +G+ PD+VT   +   
Sbjct: 198 KLLDLMSTEGNVKPNLKTYNMLIRALCKMENISEAWNVVYKMTASGMQPDVVTFNTIATA 257

Query: 302 YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS 361
           Y++ G   +A+     ++ +  +P+++    +I  Y   G+ +  +  V  M   G++ +
Sbjct: 258 YAQNGKTAQAEAMILEMQRNSLKPNERTCTIIISGYCREGKVQEALRFVYRMKDLGMQPN 317

Query: 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ--PTLESCTLLVEAYGQAGDPDQARSN 419
             +  +L+  F    D  G  ++  +M  EEFQ  P + + + ++ A+ QAG  ++ +  
Sbjct: 318 LIVLNSLVNGFVDMMDRDGVDEVLKLM--EEFQIRPDVITYSTIMNAWSQAGFLEKCKEI 375

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
           ++ M++ G KPD    + +   Y +   ++KA  +L  + K G  P    +T ++     
Sbjct: 376 YNNMLKSGVKPDAHAYSILAKGYVRAQEMEKAEEMLTVMTKSGVHPNVVIFTTVISGWCS 435

Query: 480 LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE 533
           +  ++ A ++  K+ E G +P  K   +L   YA A   K+  +A G L+  +E
Sbjct: 436 VGRMDNAMRVFDKMGEFGVSPNLKTFETLIWGYAEA---KQPWKAEGMLQIMEE 486



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 162/365 (44%), Gaps = 15/365 (4%)

Query: 219 QPSRIDWINLLDRLREQNTQLYFKVAELVLS---EESFQTNVRDYSKLIDAHAKENCLED 275
           QPS   +  LL+ L    TQ YFK    ++S   E+  + +   ++ LI+A A+   +ED
Sbjct: 104 QPSLATYTTLLNAL---TTQKYFKPIHSIVSLVEEKQMKPDSIFFNALINAFAESGNMED 160

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG-FQPDKKVYNSMI 334
           A+++++KM E+G+ P   T   L+  Y  AG  D + +  + + + G  +P+ K YN +I
Sbjct: 161 AKKVVQKMKESGLKPSACTYNTLIKGYGIAGKPDESMKLLDLMSTEGNVKPNLKTYNMLI 220

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
            A           ++V  M  SG++     +  +  ++AQ G    A  +   M+    +
Sbjct: 221 RALCKMENISEAWNVVYKMTASGMQPDVVTFNTIATAYAQNGKTAQAEAMILEMQRNSLK 280

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAY---GKKNLLDKA 451
           P   +CT+++  Y + G   +A      M  LG +P+     S++  +     ++ +D+ 
Sbjct: 281 PNERTCTIIISGYCREGKVQEALRFVYRMKDLGMQPNLIVLNSLVNGFVDMMDRDGVDEV 340

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
           L L+ E +     P   TY+ +++   +   + + +++   + + G  P       L   
Sbjct: 341 LKLMEEFQ---IRPDVITYSTIMNAWSQAGFLEKCKEIYNNMLKSGVKPDAHAYSILAKG 397

Query: 512 YARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAAS 571
           Y RA   +KA + L  +           F  +I+G  + G + +A RV   M    F  S
Sbjct: 398 YVRAQEMEKAEEMLTVMTKSGVHPNVVIFTTVISGWCSVGRMDNAMRVFDKMGE--FGVS 455

Query: 572 ERLKV 576
             LK 
Sbjct: 456 PNLKT 460



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 68/318 (21%), Positives = 135/318 (42%), Gaps = 48/318 (15%)

Query: 292 IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVD 351
           + + T ++++  K+G    A   F++L   G QP    Y +++ A       K   S+V 
Sbjct: 72  VRSRTKVMNILIKSGKPQEAIVIFQNLIEGGHQPSLATYTTLLNALTTQKYFKPIHSIVS 131

Query: 352 MMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAG 411
           ++    ++     + AL+ +FA+ G++  A ++   M+    +P+  +   L++ YG AG
Sbjct: 132 LVEEKQMKPDSIFFNALINAFAESGNMEDAKKVVQKMKESGLKPSACTYNTLIKGYGIAG 191

Query: 412 DPDQARSNFDYM----------------IRL--------------------GHKPDDRCT 435
            PD++    D M                IR                     G +PD    
Sbjct: 192 KPDESMKLLDLMSTEGNVKPNLKTYNMLIRALCKMENISEAWNVVYKMTASGMQPDVVTF 251

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++  AY +     +A  ++LE++++  +P   T T+++    R   + EA + + ++ +
Sbjct: 252 NTIATAYAQNGKTAQAEAMILEMQRNSLKPNERTCTIIISGYCREGKVQEALRFVYRMKD 311

Query: 496 LGEAPPFKIQVSL----CDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLA 549
           LG  P   +  SL     DM  R G++    + L  +E  + Q+ PD   +  I+N    
Sbjct: 312 LGMQPNLIVLNSLVNGFVDMMDRDGVD----EVLKLME--EFQIRPDVITYSTIMNAWSQ 365

Query: 550 GGFLQDAQRVHGLMEAQG 567
            GFL+  + ++  M   G
Sbjct: 366 AGFLEKCKEIYNNMLKSG 383



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/230 (20%), Positives = 104/230 (45%)

Query: 246 LVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKA 305
           L +   S + N R  + +I  + +E  +++A R + +M + G+ P+++    LV+ +   
Sbjct: 272 LEMQRNSLKPNERTCTIIISGYCREGKVQEALRFVYRMKDLGMQPNLIVLNSLVNGFVDM 331

Query: 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
            + D   E  + +     +PD   Y++++ A+  AG  +    + + M+ SG++     Y
Sbjct: 332 MDRDGVDEVLKLMEEFQIRPDVITYSTIMNAWSQAGFLEKCKEIYNNMLKSGVKPDAHAY 391

Query: 366 LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
             L + + +  ++  A ++  +M      P +   T ++  +   G  D A   FD M  
Sbjct: 392 SILAKGYVRAQEMEKAEEMLTVMTKSGVHPNVVIFTTVISGWCSVGRMDNAMRVFDKMGE 451

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
            G  P+ +   ++I  Y +     KA  +L  +E+   +P  +T  ++ +
Sbjct: 452 FGVSPNLKTFETLIWGYAEAKQPWKAEGMLQIMEEFHVQPKKSTILLVAE 501



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/244 (22%), Positives = 110/244 (45%), Gaps = 19/244 (7%)

Query: 185 KPITGKCKLITDKILSLEKEEDPSPLLAEWKEL-LQPSRI-------DWINLLDRLREQN 236
           KP    C +I        K ++    +   K+L +QP+ I        +++++DR     
Sbjct: 280 KPNERTCTIIISGYCREGKVQEALRFVYRMKDLGMQPNLIVLNSLVNGFVDMMDRD---- 335

Query: 237 TQLYFKVAELVLSEESFQT--NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVT 294
                 V E++   E FQ   +V  YS +++A ++   LE  + I   M ++G+ PD   
Sbjct: 336 -----GVDEVLKLMEEFQIRPDVITYSTIMNAWSQAGFLEKCKEIYNNMLKSGVKPDAHA 390

Query: 295 STVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMI 354
            ++L   Y +A  +++A+E    +   G  P+  ++ ++I  + + G+    M + D M 
Sbjct: 391 YSILAKGYVRAQEMEKAEEMLTVMTKSGVHPNVVIFTTVISGWCSVGRMDNAMRVFDKMG 450

Query: 355 TSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPD 414
             G+  + + +  L+  +A+      A  +  IM     QP   +  L+ EA+  AG  +
Sbjct: 451 EFGVSPNLKTFETLIWGYAEAKQPWKAEGMLQIMEEFHVQPKKSTILLVAEAWRFAGFKE 510

Query: 415 QARS 418
           +A++
Sbjct: 511 RAKT 514


>gi|30694913|ref|NP_191463.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525907|sp|Q9LYT2.2|PP287_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g59040
 gi|332646344|gb|AEE79865.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 583

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 135/281 (48%), Gaps = 6/281 (2%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           VLS+     NV  Y+ L++++ +     +AE I ++M  +G  P  +T  +++  + +  
Sbjct: 164 VLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQSSGPEPSAITYQIILKTFVEGD 223

Query: 307 NLDRAKEAFESL---RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363
               A+E FE+L   +    +PD+K+Y+ MI  Y  AG  +    +   M+  G+ +S  
Sbjct: 224 KFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTV 283

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
            Y +L+ SF      +   +I + M+  + QP + S  LL++AYG+A   ++A S F+ M
Sbjct: 284 TYNSLM-SFETS--YKEVSKIYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEM 340

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483
           +  G +P  +    ++ A+    ++++A  +   + +D   P   +YT ++        +
Sbjct: 341 LDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDM 400

Query: 484 NEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQA 524
             AE+   +I   G  P      +L   YA+A   +K ++ 
Sbjct: 401 EGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEV 441



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 145/328 (44%), Gaps = 12/328 (3%)

Query: 169 AEKIHERGEMILPEEPKPITGKCKLIT----DKILSLEKEEDPSPLLAEWKELLQPSRID 224
           AE I  R +   PE P  IT +  L T    DK    E EE    LL E K  L+P +  
Sbjct: 193 AEAIFRRMQSSGPE-PSAITYQIILKTFVEGDKFK--EAEEVFETLLDEKKSPLKPDQKM 249

Query: 225 WINLLDRLREQ-NTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKM 283
           +  ++   ++  N +   KV   ++ +   Q+ V  Y+ L+   + E   ++  +I  +M
Sbjct: 250 YHMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTV-TYNSLM---SFETSYKEVSKIYDQM 305

Query: 284 NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343
             + I PD+V+  +L+  Y +A   + A   FE +   G +P  K YN ++ A+  +G  
Sbjct: 306 QRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMV 365

Query: 344 KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403
           +   ++   M    I      Y  +L ++    D+ GA +    ++++ F+P + +   L
Sbjct: 366 EQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTL 425

Query: 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGF 463
           ++ Y +A D ++    ++ M   G K +     +++ A G+      AL    E+E  G 
Sbjct: 426 IKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASGRCKNFGSALGWYKEMESCGV 485

Query: 464 EPGPATYTVLVDWLGRLQLINEAEQLLG 491
            P      VL+        + EA++L G
Sbjct: 486 PPDQKAKNVLLSLASTQDELEEAKELTG 513


>gi|357167759|ref|XP_003581319.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Brachypodium distachyon]
          Length = 554

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 119/253 (47%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +S+   + +V  Y  LI    +   +E+A ++  +M + G+ P+ V  T L+  + K GN
Sbjct: 246 MSDVGVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVNPNAVVFTTLIDAHCKEGN 305

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           ++   + ++ +R  G  PD   YN+++     A   K   S+V+ M  +G++  +  Y  
Sbjct: 306 VNAGMDLYQDMRVRGVMPDLVAYNALVNGLCRARNLKAAESIVEEMKNAGLKPDKVTYTT 365

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    + G +  A  I   M  +E      + T L+    +AG P  A      M+   
Sbjct: 366 LIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTALISGLSKAGRPVDAERVLREMMEAA 425

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            +PD+     +I A+ +K  +     LL E++  G +PG  TY V+++ L +L  +  A+
Sbjct: 426 LEPDNTTYTMVIDAFCRKGDVKTGFKLLKEMQNKGKKPGVVTYNVIMNGLCKLGQMKNAD 485

Query: 488 QLLGKISELGEAP 500
            LL  +  +G +P
Sbjct: 486 MLLHAMLNIGVSP 498



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 70/329 (21%), Positives = 146/329 (44%), Gaps = 11/329 (3%)

Query: 239 LYFKVAELVLSEES--FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTST 296
            Y ++ +  ++ E+  F   +RD+ +L +       L  A ++  +M  + + P +VT  
Sbjct: 173 FYLQLLDAGMAPETRLFNVLMRDFVRLGE-------LVSARKVFDEMRRS-VQPTVVTFN 224

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
            L+    +A +LD     ++ +   G +PD   Y ++I  +   G+ +  + + + M  +
Sbjct: 225 TLISGMCRARDLDAVDGLYKEMSDVGVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDT 284

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
           G+  +  ++  L+ +  + G+V     +   MR+    P L +   LV    +A +   A
Sbjct: 285 GVNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPDLVAYNALVNGLCRARNLKAA 344

Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476
            S  + M   G KPD     ++I    K   LD A+++  ++ +        TYT L+  
Sbjct: 345 ESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTALISG 404

Query: 477 LGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG 536
           L +     +AE++L ++ E    P       + D + R G  K   + L  ++ K ++ G
Sbjct: 405 LSKAGRPVDAERVLREMMEAALEPDNTTYTMVIDAFCRKGDVKTGFKLLKEMQNKGKKPG 464

Query: 537 PDDFERIINGLLAGGFLQDAQR-VHGLME 564
              +  I+NGL   G +++A   +H ++ 
Sbjct: 465 VVTYNVIMNGLCKLGQMKNADMLLHAMLN 493



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/268 (22%), Positives = 103/268 (38%), Gaps = 40/268 (14%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + +     N   ++ LIDAH KE  +     + + M   G++PD+V    LV+   +A N
Sbjct: 281 MRDTGVNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPDLVAYNALVNGLCRARN 340

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L  A+   E +++ G +PDK  Y ++I      G+  + M +   M    +   E  Y A
Sbjct: 341 LKAAESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTA 400

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGD--------------- 412
           L+   ++ G    A ++   M     +P   + T++++A+ + GD               
Sbjct: 401 LISGLSKAGRPVDAERVLREMMEAALEPDNTTYTMVIDAFCRKGDVKTGFKLLKEMQNKG 460

Query: 413 --PDQARSN------------------FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P     N                     M+ +G  PDD     ++    K   +  + 
Sbjct: 461 KKPGVVTYNVIMNGLCKLGQMKNADMLLHAMLNIGVSPDDITYNILLDGQCKHGKVANS- 519

Query: 453 NLLLELEKD-GFEPGPATYTVLVDWLGR 479
               ELE   G  P  A YT L+  L +
Sbjct: 520 ---EELESSKGMVPDFAVYTSLISELAK 544



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 66/307 (21%), Positives = 131/307 (42%), Gaps = 7/307 (2%)

Query: 261 SKLIDAHAKENCLEDAERILKKMNENGI-VPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           S+L  A+A E  L DA  ++      GI +P  V S ++    S+  +   A   +  L 
Sbjct: 123 SELAAAYADEGLLPDACSLVLLALRRGISLPAPVCSGLM----SRLPSTPEAYTFYLQLL 178

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P+ +++N ++  +V  G+      + D M  S ++ +   +  L+    +  D+ 
Sbjct: 179 DAGMAPETRLFNVLMRDFVRLGELVSARKVFDEMRRS-VQPTVVTFNTLISGMCRARDLD 237

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
               +   M     +P + +   L++ + + G  + A   F+ M   G  P+     ++I
Sbjct: 238 AVDGLYKEMSDVGVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVNPNAVVFTTLI 297

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            A+ K+  ++  ++L  ++   G  P    Y  LV+ L R + +  AE ++ ++   G  
Sbjct: 298 DAHCKEGNVNAGMDLYQDMRVRGVMPDLVAYNALVNGLCRARNLKAAESIVEEMKNAGLK 357

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P      +L D   + G    A+     +  K+  +    +  +I+GL   G   DA+RV
Sbjct: 358 PDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTALISGLSKAGRPVDAERV 417

Query: 560 -HGLMEA 565
              +MEA
Sbjct: 418 LREMMEA 424



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 76/162 (46%), Gaps = 2/162 (1%)

Query: 218 LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L+P ++ +  L+D   ++    +   + +  ++E+    +   Y+ LI   +K     DA
Sbjct: 356 LKPDKVTYTTLIDGCCKDGKLDMAMDIKQ-KMAEKEVSLDEVTYTALISGLSKAGRPVDA 414

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
           ER+L++M E  + PD  T T+++  + + G++    +  + +++ G +P    YN ++  
Sbjct: 415 ERVLREMMEAALEPDNTTYTMVIDAFCRKGDVKTGFKLLKEMQNKGKKPGVVTYNVIMNG 474

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
               GQ K    L+  M+  G+   +  Y  LL    + G V
Sbjct: 475 LCKLGQMKNADMLLHAMLNIGVSPDDITYNILLDGQCKHGKV 516


>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
          Length = 592

 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 147/328 (44%)

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           V  Y+ LI+A   E  + +A ++L++M   G++PD+ T   ++    K G ++RA E   
Sbjct: 217 VITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELIT 276

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
           SL S G +PD   YN ++ A++N G+   G  LV  M + G E ++  Y  L+ S  + G
Sbjct: 277 SLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFG 336

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
            +  A  +  +M  +E  P   S   L+ A  + G  D A    DYMI  G  PD     
Sbjct: 337 RIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYN 396

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
           +++AA  K    ++AL +  +L   G  P  ++Y  ++  L      + A  ++  +   
Sbjct: 397 TILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISK 456

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDA 556
           G  P      SL     R G+ ++A+  L  +E    +     +  ++ GL     + DA
Sbjct: 457 GIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDA 516

Query: 557 QRVHGLMEAQGFAASERLKVALISSQTF 584
             +   M  +G   +E   + LI    F
Sbjct: 517 IGMFAEMIEKGCRPNETTYILLIEGIGF 544



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 147/304 (48%), Gaps = 3/304 (0%)

Query: 242 KVAELV--LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLV 299
           + AEL+  L+ +  + +V  Y+ L+ A   +   ++ E+++ +M   G  P+ VT ++L+
Sbjct: 270 RAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILI 329

Query: 300 HMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
               + G +D A    + +      PD   Y+ +I A    G+  L + ++D MI++G  
Sbjct: 330 SSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCL 389

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
                Y  +L +  + G+   A +I N +R     P + S   ++ A    GD  +A   
Sbjct: 390 PDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGM 449

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
              MI  G  PD+    S+I+   +  L+++A+ LL ++E+ GF P   +Y +++  L +
Sbjct: 450 VPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCK 509

Query: 480 LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD 539
           ++ I++A  +  ++ E G  P     + L +    AG   +A++    L + ++ +  D 
Sbjct: 510 VRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAMELANSLFS-RDVISQDS 568

Query: 540 FERI 543
           F+R+
Sbjct: 569 FKRL 572



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 77/356 (21%), Positives = 141/356 (39%), Gaps = 39/356 (10%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIV---------------- 293
           E   + +V  Y+ +I    K N +E A ++L +M   G +PDIV                
Sbjct: 140 ESHTEPDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLG 199

Query: 294 -------------------TSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
                              T T+L+      G ++ A +  E + + G  PD   YN++I
Sbjct: 200 LALTVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAII 259

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
                 G  +    L+  + + G E     Y  LLR+F   G      ++   M     +
Sbjct: 260 RGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCE 319

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P   + ++L+ +  + G  D+A S    MI     PD      +I+A  K+  LD A+ +
Sbjct: 320 PNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGI 379

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
           +  +  +G  P    Y  ++  L +    N+A ++  K+  +G  P      ++      
Sbjct: 380 MDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWS 439

Query: 515 AGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQDAQRVHGLMEAQGF 568
            G   +AL  +  + +K   + PD+  +  +I+ L   G +++A  +   ME  GF
Sbjct: 440 CGDRSRALGMVPAMISKG--IDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGF 493



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/308 (22%), Positives = 132/308 (42%), Gaps = 5/308 (1%)

Query: 262 KLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSH 321
           KL++   K     ++   L+ +   G  PD++  T L+  +    N+++A    E L SH
Sbjct: 83  KLLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILESH 142

Query: 322 GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGA 381
             +PD   YN++I  +    Q +    +++ M   G       Y  ++ S      +  A
Sbjct: 143 T-EPDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLA 201

Query: 382 GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441
             + + + ++   PT+ + T+L+EA    G  ++A    + M+  G  PD     ++I  
Sbjct: 202 LTVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRG 261

Query: 442 YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
             K+ ++++A  L+  L   G EP   +Y +L+         +E E+L+ ++   G  P 
Sbjct: 262 MCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPN 321

Query: 502 FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRV 559
                 L     R G   +A+  L  +  K  ++ PD   ++ +I+ L   G L  A  +
Sbjct: 322 KVTYSILISSLCRFGRIDEAISVLKVMIEK--ELTPDTYSYDPLISALCKEGRLDLAIGI 379

Query: 560 HGLMEAQG 567
              M + G
Sbjct: 380 MDYMISNG 387



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/255 (21%), Positives = 110/255 (43%), Gaps = 4/255 (1%)

Query: 236 NTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTS 295
           N  LYF      L  + +  +V   +KLI        +E A R+++ + E+   PD+   
Sbjct: 95  NESLYFLEC---LVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEIL-ESHTEPDVFAY 150

Query: 296 TVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMIT 355
             ++  + K   ++ A +    +++ GF PD   YN MI +  N  +  L ++++D ++ 
Sbjct: 151 NAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALTVLDQLLL 210

Query: 356 SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ 415
                +   Y  L+ +    G +  A ++   M      P + +   ++    + G  ++
Sbjct: 211 DNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVER 270

Query: 416 ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
           A      +   G +PD      ++ A+  +   D+   L+ E+   G EP   TY++L+ 
Sbjct: 271 AAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILIS 330

Query: 476 WLGRLQLINEAEQLL 490
            L R   I+EA  +L
Sbjct: 331 SLCRFGRIDEAISVL 345


>gi|7529747|emb|CAB86932.1| putative protein [Arabidopsis thaliana]
 gi|24030379|gb|AAN41351.1| unknown protein [Arabidopsis thaliana]
          Length = 526

 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 135/281 (48%), Gaps = 6/281 (2%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           VLS+     NV  Y+ L++++ +     +AE I ++M  +G  P  +T  +++  + +  
Sbjct: 107 VLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQSSGPEPSAITYQIILKTFVEGD 166

Query: 307 NLDRAKEAFESL---RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363
               A+E FE+L   +    +PD+K+Y+ MI  Y  AG  +    +   M+  G+ +S  
Sbjct: 167 KFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTV 226

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
            Y +L+ SF      +   +I + M+  + QP + S  LL++AYG+A   ++A S F+ M
Sbjct: 227 TYNSLM-SFETS--YKEVSKIYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEM 283

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483
           +  G +P  +    ++ A+    ++++A  +   + +D   P   +YT ++        +
Sbjct: 284 LDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDM 343

Query: 484 NEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQA 524
             AE+   +I   G  P      +L   YA+A   +K ++ 
Sbjct: 344 EGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEV 384



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 145/328 (44%), Gaps = 12/328 (3%)

Query: 169 AEKIHERGEMILPEEPKPITGKCKLIT----DKILSLEKEEDPSPLLAEWKELLQPSRID 224
           AE I  R +   PE P  IT +  L T    DK    E EE    LL E K  L+P +  
Sbjct: 136 AEAIFRRMQSSGPE-PSAITYQIILKTFVEGDKFK--EAEEVFETLLDEKKSPLKPDQKM 192

Query: 225 WINLLDRLREQ-NTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKM 283
           +  ++   ++  N +   KV   ++ +   Q+ V  Y+ L+   + E   ++  +I  +M
Sbjct: 193 YHMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTV-TYNSLM---SFETSYKEVSKIYDQM 248

Query: 284 NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343
             + I PD+V+  +L+  Y +A   + A   FE +   G +P  K YN ++ A+  +G  
Sbjct: 249 QRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMV 308

Query: 344 KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403
           +   ++   M    I      Y  +L ++    D+ GA +    ++++ F+P + +   L
Sbjct: 309 EQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTL 368

Query: 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGF 463
           ++ Y +A D ++    ++ M   G K +     +++ A G+      AL    E+E  G 
Sbjct: 369 IKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASGRCKNFGSALGWYKEMESCGV 428

Query: 464 EPGPATYTVLVDWLGRLQLINEAEQLLG 491
            P      VL+        + EA++L G
Sbjct: 429 PPDQKAKNVLLSLASTQDELEEAKELTG 456


>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
 gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
 gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 634

 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 113/251 (45%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E+    N+  ++ LIDA  KE    +AE++   M +  I PDI T   LV+ +     LD
Sbjct: 323 EKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLD 382

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
           +AK+ FE + S    PD   YN++I  +  + + + G  L   M   G+      Y  L+
Sbjct: 383 KAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 442

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
           +     GD   A ++   M  +   P + + ++L++     G  ++A   FDYM +   K
Sbjct: 443 QGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIK 502

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
            D     +MI    K   +D   +L   L   G +P   TY  ++  L   +L+ EA  L
Sbjct: 503 LDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYAL 562

Query: 490 LGKISELGEAP 500
           L K+ E G  P
Sbjct: 563 LKKMKEDGPLP 573



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/281 (22%), Positives = 121/281 (43%), Gaps = 7/281 (2%)

Query: 198 ILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKVAELVLSE---ESF 253
           + S  +  D S LL++  E  + P+ + +  L+D   ++     F  AE +  +    S 
Sbjct: 305 LCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGK---FVEAEKLYDDMIKRSI 361

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
             ++  Y+ L++     + L+ A+++ + M      PD+VT   L+  + K+  ++   E
Sbjct: 362 DPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTE 421

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            F  +   G   D   Y ++I    + G       +   M++ G+      Y  LL    
Sbjct: 422 LFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLC 481

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
             G +  A ++ + M+  E +  +   T ++E   +AG  D     F  +   G KP+  
Sbjct: 482 NNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVV 541

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
              +MI+    K LL +A  LL ++++DG  P   TY  L+
Sbjct: 542 TYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLI 582



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 76/376 (20%), Positives = 149/376 (39%), Gaps = 10/376 (2%)

Query: 219 QPSRIDWINLLDRLREQNTQLYFKVAELV-----LSEESFQTNVRDYSKLIDAHAKENCL 273
           +P  I +  L+  L   N     K +E V     + +   Q N+  Y  +++   K    
Sbjct: 187 RPDTITFTTLIHGLFLHN-----KASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDT 241

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           + A  +L KM    I  D+V    ++    K  ++D A   F+ + + G +P+   Y+S+
Sbjct: 242 DLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSL 301

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           I    + G+      L+  MI   I  +   + AL+ +F + G    A ++ + M     
Sbjct: 302 ISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSI 361

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
            P + +   LV  +      D+A+  F++M+     PD     ++I  + K   ++    
Sbjct: 362 DPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTE 421

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
           L  E+   G      TYT L+  L      + A+++  ++   G  P       L D   
Sbjct: 422 LFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLC 481

Query: 514 RAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASER 573
             G  +KAL+   +++  + ++    +  +I G+   G + D   +   +  +G   +  
Sbjct: 482 NNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVV 541

Query: 574 LKVALISSQTFNRQRQ 589
               +IS     R  Q
Sbjct: 542 TYNTMISGLCSKRLLQ 557



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 69/320 (21%), Positives = 135/320 (42%), Gaps = 6/320 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E  ++ +   ++ LI      N   +A  ++ +M + G  P++VT  V+V+   K G+
Sbjct: 181 MVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGD 240

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            D A      + +   + D  ++N++I +          ++L   M T GI  +   Y +
Sbjct: 241 TDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSS 300

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+      G    A Q+ + M  ++  P L +   L++A+ + G   +A   +D MI+  
Sbjct: 301 LISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRS 360

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLL-LELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
             PD     S++  +   + LDKA  +    + KD F P   TY  L+    + + + + 
Sbjct: 361 IDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCF-PDVVTYNTLIKGFCKSKRVEDG 419

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERII 544
            +L  ++S  G         +L       G    A +   F +   + + PD   +  ++
Sbjct: 420 TELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKV--FKQMVSDGVPPDIMTYSILL 477

Query: 545 NGLLAGGFLQDAQRVHGLME 564
           +GL   G L+ A  V   M+
Sbjct: 478 DGLCNNGKLEKALEVFDYMQ 497



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 69/315 (21%), Positives = 132/315 (41%), Gaps = 8/315 (2%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           ++ +++KL+ A AK    +    + +KM    IV  + T  +L++ + +   +  A    
Sbjct: 84  SIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALL 143

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G++P     +S++  Y +  +    ++LVD M+  G       +  L+      
Sbjct: 144 GKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLH 203

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
                A  + + M     QP L +  ++V    + GD D A +  + M     + D    
Sbjct: 204 NKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIF 263

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I +  K   +D ALNL  E+E  G  P   TY+ L+  L      ++A QLL  + E
Sbjct: 264 NTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIE 323

Query: 496 LGEAPPFKIQVSLCDMYARAG--IEKKALQALGFLEAKKEQMGPDDF--ERIINGLLAGG 551
               P      +L D + + G  +E + L    + +  K  + PD F    ++NG     
Sbjct: 324 KKINPNLVTFNALIDAFVKEGKFVEAEKL----YDDMIKRSIDPDIFTYNSLVNGFCMHD 379

Query: 552 FLQDAQRVHGLMEAQ 566
            L  A+++   M ++
Sbjct: 380 RLDKAKQMFEFMVSK 394



 Score = 47.0 bits (110), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 60/138 (43%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           ++  YS L+D       LE A  +   M ++ I  DI   T ++    KAG +D   + F
Sbjct: 469 DIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLF 528

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
            SL   G +P+   YN+MI    +    +   +L+  M   G   +   Y  L+R+  + 
Sbjct: 529 CSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRD 588

Query: 376 GDVRGAGQITNIMRIEEF 393
           GD   + ++   MR   F
Sbjct: 589 GDKAASAELIREMRSCRF 606


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 139/309 (44%), Gaps = 13/309 (4%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           +S L D + K   +E+A  I  KM +     DIVT T ++  Y + G      + F  L 
Sbjct: 241 WSALSDMYGKCGSIEEARHIFDKMVDR----DIVTWTAMIDRYFQDGRRKEGFDLFADLL 296

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +P++  ++ ++ A  N    +LG  +   M   G +       AL+  +++CG++ 
Sbjct: 297 RSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAASALVHMYSKCGNMV 356

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++      E  QP L S T L+  Y Q G PD+A   F+ +++ G +PD      ++
Sbjct: 357 SAERVFK----ETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVL 412

Query: 440 AAYGKKNLLDKALNLLLEL-EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           +A     L+DK L+    + E+ G       Y  ++D L R    +EAE ++ K+S   +
Sbjct: 413 SACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFDEAENIISKMSMKPD 472

Query: 499 APPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQR 558
              +   +  C ++    + ++A +AL  +E +     P  +  + N     G   +  +
Sbjct: 473 KFLWASLLGGCRIHGNLKLAQRAAEALFEIEPE----NPATYVTLANIYATAGMWSEVAK 528

Query: 559 VHGLMEAQG 567
           +   M+ +G
Sbjct: 529 IRKTMDDRG 537



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 126/284 (44%), Gaps = 25/284 (8%)

Query: 223 IDWINLLDRL-----REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           + W  ++DR      R++   L+   A+L+ S    + N   +S +++A A +   E  +
Sbjct: 270 VTWTAMIDRYFQDGRRKEGFDLF---ADLLRS--GIRPNEFTFSGVLNACANQTSEELGK 324

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
           ++   M   G  P    ++ LVHMYSK GN+  A+  F+       QPD   + S+I  Y
Sbjct: 325 KVHGYMTRVGFDPFSFAASALVHMYSKCGNMVSAERVFKETP----QPDLFSWTSLIAGY 380

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV-RGAGQITNIMRIEEFQPT 396
              GQP   +   ++++ SG +     ++ +L + A  G V +G     +I        T
Sbjct: 381 AQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHT 440

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA---YGKKNLLDKALN 453
            +    +++   ++G  D+A    + + ++  KPD    AS++     +G   L  +A  
Sbjct: 441 ADHYACIIDLLARSGQFDEAE---NIISKMSMKPDKFLWASLLGGCRIHGNLKLAQRAAE 497

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
            L E+E +     PATY  L +      + +E  ++   + + G
Sbjct: 498 ALFEIEPE----NPATYVTLANIYATAGMWSEVAKIRKTMDDRG 537



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 71/354 (20%), Positives = 133/354 (37%), Gaps = 44/354 (12%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE--- 316
           YS LI +  K   L+  +++ + +  +G VP +     L+ MY+K  +L  +++ F+   
Sbjct: 73  YSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLFILNRLLEMYAKCDSLMDSQKLFDEMP 132

Query: 317 ------------------------SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDM 352
                                   SL     + D   + +MI  YV   +P   + L  M
Sbjct: 133 ERDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEALELFRM 192

Query: 353 MITSGIERSEEIYLA---LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409
           M  S   +S +  ++      +   C  +R   +I   +            + L + YG+
Sbjct: 193 MKRSDNSKSNKFTVSSALAAAAAVPC--LRIGKEIHGYIMRTGLDSDEVVWSALSDMYGK 250

Query: 410 AGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPAT 469
            G  ++AR  FD M+      D     +MI  Y +     +  +L  +L + G  P   T
Sbjct: 251 CGSIEEARHIFDKMV----DRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFT 306

Query: 470 YTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLE 529
           ++ +++           +++ G ++ +G  P      +L  MY++ G    A +      
Sbjct: 307 FSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAASALVHMYSKCGNMVSAERVF---- 362

Query: 530 AKKEQMGPDDFE--RIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
             KE   PD F    +I G    G   +A R   L+   G        V ++S+
Sbjct: 363 --KETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSA 414


>gi|242058007|ref|XP_002458149.1| hypothetical protein SORBIDRAFT_03g027690 [Sorghum bicolor]
 gi|241930124|gb|EES03269.1| hypothetical protein SORBIDRAFT_03g027690 [Sorghum bicolor]
          Length = 795

 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 98/226 (43%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E+    N+  Y+  ID + + NC + A ++L  M  NGI PDI      ++M+ K GN
Sbjct: 564 MCEKGITPNIVTYTSFIDGYCRTNCCDLAVKLLIYMRCNGIHPDIAAYNAFINMFCKQGN 623

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A      L   G  P+  VYNS +  Y N             MI   I    EIY  
Sbjct: 624 MSHALHFLVLLLKDGLTPNVTVYNSFVTGYKNLKMMAEASKFYYSMIKQRIAADTEIYTT 683

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+  F++ G+V  A ++ + M      P  ++ T L     ++GD D A+   D M RL 
Sbjct: 684 LIDGFSKVGNVAFALELYSEMLANHNIPDDKTFTALTHGLCRSGDIDGAKRLLDDMTRLD 743

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVL 473
             P+      +I A+ +   L +A  L  ++   G  P   TY + 
Sbjct: 744 VCPNTVTYNMLINAHIRDGKLQEAFQLHDKMLSSGVVPDDTTYNIF 789



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 124/295 (42%), Gaps = 1/295 (0%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           L PS  ++ NL+ +   +N Q    +A   L  ++   +V  Y  LI   +K + + +A 
Sbjct: 360 LLPSTYEF-NLVIKGLLRNKQWEDAIALFDLVVDTGVPDVFTYGCLIHWLSKHHKVHEAV 418

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
            +  KM E G+ P IVT   L+  Y + G +D A + +  +   GF P++  Y +++  Y
Sbjct: 419 NLWDKMKEAGVKPSIVTCHSLLLGYCEKGCMDEALKLYSEMPGKGFPPNEVTYTTLMKGY 478

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
           +         +L++ M  +G+   E  Y  L+        V    ++      E F PT 
Sbjct: 479 IKKKAFDKAYALLNEMHQNGVSCGEYTYNILINGLCMVDRVCEVDEMLKRFVSEGFVPTT 538

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
            +   ++  + +AG    A + +  M   G  P+     S I  Y + N  D A+ LL+ 
Sbjct: 539 MTYNSIINGFVKAGMMGSALAMYRQMCEKGITPNIVTYTSFIDGYCRTNCCDLAVKLLIY 598

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
           +  +G  P  A Y   ++   +   ++ A   L  + + G  P   +  S    Y
Sbjct: 599 MRCNGIHPDIAAYNAFINMFCKQGNMSHALHFLVLLLKDGLTPNVTVYNSFVTGY 653



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/278 (21%), Positives = 118/278 (42%), Gaps = 6/278 (2%)

Query: 223 IDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKK 282
           I+ + ++DR+ E +  L   V+E       F      Y+ +I+   K   +  A  + ++
Sbjct: 510 INGLCMVDRVCEVDEMLKRFVSE------GFVPTTMTYNSIINGFVKAGMMGSALAMYRQ 563

Query: 283 MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
           M E GI P+IVT T  +  Y +    D A +    +R +G  PD   YN+ I  +   G 
Sbjct: 564 MCEKGITPNIVTYTSFIDGYCRTNCCDLAVKLLIYMRCNGIHPDIAAYNAFINMFCKQGN 623

Query: 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402
               +  + +++  G+  +  +Y + +  +     +  A +    M  +      E  T 
Sbjct: 624 MSHALHFLVLLLKDGLTPNVTVYNSFVTGYKNLKMMAEASKFYYSMIKQRIAADTEIYTT 683

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           L++ + + G+   A   +  M+   + PDD+   ++     +   +D A  LL ++ +  
Sbjct: 684 LIDGFSKVGNVAFALELYSEMLANHNIPDDKTFTALTHGLCRSGDIDGAKRLLDDMTRLD 743

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
             P   TY +L++   R   + EA QL  K+   G  P
Sbjct: 744 VCPNTVTYNMLINAHIRDGKLQEAFQLHDKMLSSGVVP 781



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 108/237 (45%), Gaps = 1/237 (0%)

Query: 286 NGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKL 345
           +G+ P  VT TVL+      G  D   +    +   G  P    +N +I   +   Q + 
Sbjct: 323 DGVTPTNVTYTVLIKGCDAEGMTDETYKLCRQMIEQGLLPSTYEFNLVIKGLLRNKQWED 382

Query: 346 GMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVE 405
            ++L D+++ +G+      Y  L+   ++   V  A  + + M+    +P++ +C  L+ 
Sbjct: 383 AIALFDLVVDTGVP-DVFTYGCLIHWLSKHHKVHEAVNLWDKMKEAGVKPSIVTCHSLLL 441

Query: 406 AYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
            Y + G  D+A   +  M   G  P++    +++  Y KK   DKA  LL E+ ++G   
Sbjct: 442 GYCEKGCMDEALKLYSEMPGKGFPPNEVTYTTLMKGYIKKKAFDKAYALLNEMHQNGVSC 501

Query: 466 GPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522
           G  TY +L++ L  +  + E +++L +    G  P      S+ + + +AG+   AL
Sbjct: 502 GEYTYNILINGLCMVDRVCEVDEMLKRFVSEGFVPTTMTYNSIINGFVKAGMMGSAL 558



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 69/311 (22%), Positives = 119/311 (38%), Gaps = 39/311 (12%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           + F  N   Y+ L+  + K+   + A  +L +M++NG+     T  +L++       +  
Sbjct: 462 KGFPPNEVTYTTLMKGYIKKKAFDKAYALLNEMHQNGVSCGEYTYNILINGLCMVDRVCE 521

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
             E  +   S GF P    YNS+I  +V AG     +++   M   GI            
Sbjct: 522 VDEMLKRFVSEGFVPTTMTYNSIINGFVKAGMMGSALAMYRQMCEKGI------------ 569

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
                                   P + + T  ++ Y +    D A     YM   G  P
Sbjct: 570 -----------------------TPNIVTYTSFIDGYCRTNCCDLAVKLLIYMRCNGIHP 606

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           D     + I  + K+  +  AL+ L+ L KDG  P    Y   V     L+++ EA +  
Sbjct: 607 DIAAYNAFINMFCKQGNMSHALHFLVLLLKDGLTPNVTVYNSFVTGYKNLKMMAEASKFY 666

Query: 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLL 548
             + +   A   +I  +L D +++ G    AL+   + E       PDD  F  + +GL 
Sbjct: 667 YSMIKQRIAADTEIYTTLIDGFSKVGNVAFALEL--YSEMLANHNIPDDKTFTALTHGLC 724

Query: 549 AGGFLQDAQRV 559
             G +  A+R+
Sbjct: 725 RSGDIDGAKRL 735



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 97/220 (44%), Gaps = 1/220 (0%)

Query: 282 KMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAG 341
           +M   G+VPD  + T L+   ++  +   A   F+ +R  G+  D K+Y+ ++ A V   
Sbjct: 143 RMVTRGVVPDAKSRTDLLVATARGASAADALTLFDEMRCKGYYADAKMYDVVMRACVVGR 202

Query: 342 QPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCT 401
                + L D M  +G++  E +Y   +    +  D   A Q+   MR    +P   +  
Sbjct: 203 MHGDAVRLFDEMAGAGVKPDERVYAITITGLCKLRDADRAVQVLGKMREAGLKPRDFTYN 262

Query: 402 LLVEAYGQAGDPDQARSNFDYM-IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
            +V+   + G  D+A    D M +  G K D     +++  Y     + KAL+L  E  +
Sbjct: 263 SVVDVLVKVGRMDEALRLKDQMLLATGKKMDVFLATTLMQGYCLHGEIGKALDLFDEAVR 322

Query: 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
           DG  P   TYTVL+       + +E  +L  ++ E G  P
Sbjct: 323 DGVTPTNVTYTVLIKGCDAEGMTDETYKLCRQMIEQGLLP 362


>gi|356557981|ref|XP_003547288.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Glycine max]
          Length = 706

 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 133/319 (41%), Gaps = 17/319 (5%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
            E AE++  +M   G+ P+++T + ++   S      +A + FE + S G +PD  V +S
Sbjct: 197 FEGAEKLFDEMLHRGVNPNLITFSTMISCASVCSLPHKAVKWFEMMPSFGCEPDNNVCSS 256

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           MI AY   G   + + L D            ++  L++ +   G+  G   + N M++  
Sbjct: 257 MIYAYTRTGNTDMALRLYDRAKAGKWHVDTAVFSGLIKMYGVSGNYVGCLNVYNDMKVLG 316

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
            +P L +   L+ A G+A     A++ +  MI  G  P+    A+++ AY +      AL
Sbjct: 317 AKPNLTTYNALLYAMGRAKRARDAKAIYGEMISNGLSPNWPTYAALLQAYCRARFNRDAL 376

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQ-VSLCDM 511
           N+  E+++ G +     Y +L D    +  ++EA ++   +   G  PP      SL +M
Sbjct: 377 NVYKEMKEKGKDLDILLYNMLFDMCANVGCVDEAVKIFEHMKSSGTCPPDSFTYASLINM 436

Query: 512 YAR----------------AGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
           Y+                 +G E   +     +    +    DD  +I N L+  G   D
Sbjct: 437 YSSIGKILEMEAMFNEMMESGFEPNIIVLTSLVHCYGKAKRTDDVVKIFNQLMDLGISPD 496

Query: 556 AQRVHGLMEAQGFAASERL 574
            +    L+ A      E L
Sbjct: 497 GRFCDCLLYAMTQVPKEEL 515



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 82/194 (42%), Gaps = 12/194 (6%)

Query: 242 KVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM 301
           K+ E + S  +   +   Y+ LI+ ++    + + E +  +M E+G  P+I+  T LVH 
Sbjct: 412 KIFEHMKSSGTCPPDSFTYASLINMYSSIGKILEMEAMFNEMMESGFEPNIIVLTSLVHC 471

Query: 302 YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS 361
           Y KA   D   + F  L   G  PD +  + ++ A     + +LG       ++  +E++
Sbjct: 472 YGKAKRTDDVVKIFNQLMDLGISPDGRFCDCLLYAMTQVPKEELG------KLSGCVEKA 525

Query: 362 EEIYLALLRSFAQ----CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
                ++LR   +     GD R   + + +    E       C  L++       PD+AR
Sbjct: 526 NPKLGSVLRYIMEKQEGGGDFR--TEASELFNSTEADVKKSMCNCLIDLCVSLDVPDRAR 583

Query: 418 SNFDYMIRLGHKPD 431
              D  + L   PD
Sbjct: 584 DLLDLGLTLEIYPD 597


>gi|356512664|ref|XP_003525037.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74750-like [Glycine max]
          Length = 873

 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 107/222 (48%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  LID HAK   ++ A  + K+M E G+ PD  T +V+++   KAGNL  A   F  + 
Sbjct: 450 YCTLIDIHAKAGFIDVAMSMYKRMQEAGLSPDTFTYSVIINCLGKAGNLAAAHWLFCEMV 509

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
            HG  P+   YN MI     A   ++ + L   M  +G +  +  Y  ++ +   CG + 
Sbjct: 510 EHGCVPNLVTYNIMIALQAKARNYEMALKLYHDMQNAGFQPDKVTYSIVMEALGHCGYLE 569

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  +   M+ + + P      LLV+ +G+AG+ ++A   +  M+  G  P+     S++
Sbjct: 570 EAESVFVEMQQKNWVPDEPVYGLLVDLWGKAGNVEKASEWYQAMLNAGLLPNVPTCNSLL 629

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ 481
           +A+ + + L  A NL+  +   G  P   TYT+L+      Q
Sbjct: 630 SAFLRLHRLPDAYNLVQSMVALGLRPSLQTYTLLLSCCTEAQ 671



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 126/294 (42%), Gaps = 37/294 (12%)

Query: 228 LLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENG 287
           +L +L++ +  L F   + +  +  F+ +   Y+ ++    +    +   ++L++M ++G
Sbjct: 350 ILKQLQDPSVALGF--FDWLRRQPGFRHDGHTYTTMVGILGRARRFDSISKLLEQMVKDG 407

Query: 288 IVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGM 347
             P++VT   L+H Y  A  L  A   F  ++  G +PD+  Y ++I  +  AG   + M
Sbjct: 408 CQPNVVTYNRLIHCYGCANYLKEALNVFNEMQEVGCEPDRVTYCTLIDIHAKAGFIDVAM 467

Query: 348 SLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAY 407
           S+   M  +G+      Y                                   ++++   
Sbjct: 468 SMYKRMQEAGLSPDTFTY-----------------------------------SVIINCL 492

Query: 408 GQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGP 467
           G+AG+   A   F  M+  G  P+      MIA   K    + AL L  +++  GF+P  
Sbjct: 493 GKAGNLAAAHWLFCEMVEHGCVPNLVTYNIMIALQAKARNYEMALKLYHDMQNAGFQPDK 552

Query: 468 ATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKA 521
            TY+++++ LG    + EAE +  ++ +    P   +   L D++ +AG  +KA
Sbjct: 553 VTYSIVMEALGHCGYLEEAESVFVEMQQKNWVPDEPVYGLLVDLWGKAGNVEKA 606



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 88/208 (42%), Gaps = 13/208 (6%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +    FQ +   YS +++A      LE+AE +  +M +   VPD     +LV ++ KAGN
Sbjct: 543 MQNAGFQPDKVTYSIVMEALGHCGYLEEAESVFVEMQQKNWVPDEPVYGLLVDLWGKAGN 602

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +++A E ++++ + G  P+    NS++ A++   +     +LV  M+  G+  S + Y  
Sbjct: 603 VEKASEWYQAMLNAGLLPNVPTCNSLLSAFLRLHRLPDAYNLVQSMVALGLRPSLQTYTL 662

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           LL    +       G    +M +        +   L+       D    R +    + + 
Sbjct: 663 LLSCCTEAQPAHDMGFFCELMAVTGH----PAHAFLLSMPAAGPDGQNVRDHVSKFLDMM 718

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLL 455
           H  D           GK+ L+D  +N L
Sbjct: 719 HTEDRE---------GKRGLVDSVVNFL 737



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 82/187 (43%), Gaps = 15/187 (8%)

Query: 384 ITNIMRIEEFQPTLE----SCTLLVEAY------GQAGDPDQARSNFDYMIRL-GHKPDD 432
           +++I+R   + PT E    +    ++AY       Q  DP  A   FD++ R  G + D 
Sbjct: 318 VSDILRQLRWGPTAEKALYNLNFSMDAYQANQILKQLQDPSVALGFFDWLRRQPGFRHDG 377

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               +M+   G+    D    LL ++ KDG +P   TY  L+   G    + EA  +  +
Sbjct: 378 HTYTTMVGILGRARRFDSISKLLEQMVKDGCQPNVVTYNRLIHCYGCANYLKEALNVFNE 437

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFER--IINGLLAG 550
           + E+G  P      +L D++A+AG    A+    +   ++  + PD F    IIN L   
Sbjct: 438 MQEVGCEPDRVTYCTLIDIHAKAGFIDVAMSM--YKRMQEAGLSPDTFTYSVIINCLGKA 495

Query: 551 GFLQDAQ 557
           G L  A 
Sbjct: 496 GNLAAAH 502



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 86/186 (46%)

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
           QP + +   L+  YG A    +A + F+ M  +G +PD     ++I  + K   +D A++
Sbjct: 409 QPNVVTYNRLIHCYGCANYLKEALNVFNEMQEVGCEPDRVTYCTLIDIHAKAGFIDVAMS 468

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
           +   +++ G  P   TY+V+++ LG+   +  A  L  ++ E G  P       +  + A
Sbjct: 469 MYKRMQEAGLSPDTFTYSVIINCLGKAGNLAAAHWLFCEMVEHGCVPNLVTYNIMIALQA 528

Query: 514 RAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASER 573
           +A   + AL+    ++    Q     +  ++  L   G+L++A+ V   M+ + +   E 
Sbjct: 529 KARNYEMALKLYHDMQNAGFQPDKVTYSIVMEALGHCGYLEEAESVFVEMQQKNWVPDEP 588

Query: 574 LKVALI 579
           +   L+
Sbjct: 589 VYGLLV 594


>gi|356551783|ref|XP_003544253.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 576

 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 146/338 (43%), Gaps = 18/338 (5%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V   + LIDA  KE+ +  A ++  +M   G  PD+VT  VL+  + K G LD A    
Sbjct: 215 DVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRFL 274

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + L S+G QPD   +N ++ +  + G+    M L+  M+  G   S   +  L+    Q 
Sbjct: 275 KKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFLCQK 334

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A  +  +M      P   S   L++ +      D+A    + M+  G  PD    
Sbjct: 335 GLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTY 394

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             ++ A  K   +D A+ +L +L   G  P   +Y  ++D L ++     A +LL ++  
Sbjct: 395 NILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCY 454

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF--ERIINGL------ 547
            G  P      S+    +R G  ++A++   +L  K+  + P+ F    II GL      
Sbjct: 455 KGLKPDLITCTSVVGGLSREGKVREAMKFFHYL--KRFAIRPNAFIYNSIITGLCKSQQT 512

Query: 548 -LAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTF 584
            LA  FL D       M A+G   +E     LI   T+
Sbjct: 513 SLAIDFLAD-------MVAKGCKPTEATYTTLIKGITY 543



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 123/295 (41%), Gaps = 3/295 (1%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           LE+  R L+ M   G  PD++  T L+  + K G    A +    L   G   D   YN 
Sbjct: 95  LEEGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVIDVTSYNV 154

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I  Y  +G+ +  + ++D M   G+  +   Y A+L S    G ++ A Q+       +
Sbjct: 155 LISGYCKSGEIEEALRVLDRM---GVSPNAATYDAVLCSLCDRGKLKQAMQVLGRQLQSK 211

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P + +CT+L++A  +     QA   F+ M   G KPD      +I  + K   LD+A+
Sbjct: 212 CYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAI 271

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
             L +L   G +P   ++ +++  L       +A +LL  +   G  P       L +  
Sbjct: 272 RFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFL 331

Query: 513 ARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
            + G+  KAL  L  +           F  +I G   G  +  A     +M ++G
Sbjct: 332 CQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRG 386



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 61/279 (21%), Positives = 123/279 (44%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           VL       N   Y  ++ +      L+ A ++L +  ++   PD+VT TVL+    K  
Sbjct: 171 VLDRMGVSPNAATYDAVLCSLCDRGKLKQAMQVLGRQLQSKCYPDVVTCTVLIDATCKES 230

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            + +A + F  +R+ G +PD   YN +I  +   G+    +  +  + + G +     + 
Sbjct: 231 GVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRFLKKLPSYGCQPDVISHN 290

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            +LRS    G    A ++   M  +   P++ +  +L+    Q G   +A +  + M + 
Sbjct: 291 MILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFLCQKGLLGKALNVLEMMPKH 350

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           GH P+ R    +I  +     +D+A+  L  +   G  P   TY +L+  L +   +++A
Sbjct: 351 GHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNILLTALCKDGKVDDA 410

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
             +L ++S  G +P      ++ D   + G  + A++ L
Sbjct: 411 VVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELL 449



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 103/234 (44%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  ++ LI+   ++  L  A  +L+ M ++G  P+  +   L+  +     +DRA E  
Sbjct: 320 SVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYL 379

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E + S G  PD   YN ++ A    G+    + ++  + + G   S   Y  ++    + 
Sbjct: 380 EIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKV 439

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G    A ++   M  +  +P L +CT +V    + G   +A   F Y+ R   +P+    
Sbjct: 440 GKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVREAMKFFHYLKRFAIRPNAFIY 499

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
            S+I    K      A++ L ++   G +P  ATYT L+  +    L  +A +L
Sbjct: 500 NSIITGLCKSQQTSLAIDFLADMVAKGCKPTEATYTTLIKGITYEGLAEDASKL 553



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 67/139 (48%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           LS +    ++  Y+ +ID   K    E A  +L++M   G+ PD++T T +V   S+ G 
Sbjct: 417 LSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGK 476

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A + F  L+    +P+  +YNS+I     + Q  L +  +  M+  G + +E  Y  
Sbjct: 477 VREAMKFFHYLKRFAIRPNAFIYNSIITGLCKSQQTSLAIDFLADMVAKGCKPTEATYTT 536

Query: 368 LLRSFAQCGDVRGAGQITN 386
           L++     G    A +++N
Sbjct: 537 LIKGITYEGLAEDASKLSN 555


>gi|302771417|ref|XP_002969127.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
 gi|300163632|gb|EFJ30243.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
          Length = 646

 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 79/350 (22%), Positives = 147/350 (42%), Gaps = 40/350 (11%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  Y+ LID + +   L+D  ++ K M E    PD+VT   L+  +   G L      F
Sbjct: 284 NIVTYNILIDIYGRMEKLDDMMKVFKFMQEKNCTPDLVTWNSLLKSFGNCGMLTEVSNVF 343

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA-- 373
             ++  G+ P    +N +I  Y   G     + +   ++ +G++ +   + AL+ S A  
Sbjct: 344 REMKRAGYMPGVDTFNILIECYGRCGYVDYSVDIYKGLLRTGLQPTVPTFAALMASLARE 403

Query: 374 ----QC--------------GDVRGAGQITN------IMRIEEFQPTLES---------- 399
               QC               D   AG I +        ++ ++   LE           
Sbjct: 404 GRWQQCEKVSQEMAEAGLQLSDACHAGLIHSYANSGQFFQLRKYIDELEKSAKQPLSGIL 463

Query: 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELE 459
           C   V AY +    ++A+   + +   GH PD +   +MI+   K+  +++A+ LL E+ 
Sbjct: 464 CKTFVLAYCKCCMDNEAQLALNQLYDNGHSPDIKVFNAMISMCAKRGWIERAVKLLEEIR 523

Query: 460 KDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEK 519
           K   +P   TY  L+   GR  + ++AE+++ ++   G+AP      +L   Y + G   
Sbjct: 524 KAQLKPDGVTYNCLMSMYGREGMYHKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMD 583

Query: 520 KALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQDAQRVHGLMEAQG 567
            A +  G + A + +  PD+  F  ++    + G  ++A  V   M   G
Sbjct: 584 DAARVFGDMVAARVR--PDNFTFNTLVGSYSSLGLYKEALSVIEYMTEHG 631



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 115/257 (44%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +I A  + +  ++A R+ ++M E G  P+ VT   L+ +Y K G    A E    + 
Sbjct: 148 YNTMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNALLDVYGKGGMHKEASELLVEME 207

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G  P+   YN +I AY  AG      +L   +++ G+   E  Y  L+ +F +     
Sbjct: 208 AAGISPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLCPDEFTYCTLISAFNRAERYE 267

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A +    MR     P + +  +L++ YG+    D     F +M      PD     S++
Sbjct: 268 KALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFMQEKNCTPDLVTWNSLL 327

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            ++G   +L +  N+  E+++ G+ PG  T+ +L++  GR   ++ +  +   +   G  
Sbjct: 328 KSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGYVDYSVDIYKGLLRTGLQ 387

Query: 500 PPFKIQVSLCDMYARAG 516
           P      +L    AR G
Sbjct: 388 PTVPTFAALMASLAREG 404



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/333 (21%), Positives = 144/333 (43%), Gaps = 1/333 (0%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN-L 308
           +ES+  +V  Y+ LI   ++    ++   + + M   G   + VT  V++ +Y K G+  
Sbjct: 67  DESYSLDVYAYTSLISILSRARRFDEGITLFETMQREGQRGNAVTYNVMLDLYGKRGDSW 126

Query: 309 DRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLAL 368
           DR +  F+ ++     PD   YN+MI A +     +  + L   M  +G   +   Y AL
Sbjct: 127 DRIQSLFQEMKDLEISPDDYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNAL 186

Query: 369 LRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH 428
           L  + + G  + A ++   M      P + +   L+ AY +AG  D+A +    ++  G 
Sbjct: 187 LDVYGKGGMHKEASELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGL 246

Query: 429 KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQ 488
            PD+    ++I+A+ +    +KAL    E+ K    P   TY +L+D  GR++ +++  +
Sbjct: 247 CPDEFTYCTLISAFNRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMK 306

Query: 489 LLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLL 548
           +   + E    P      SL   +   G+  +       ++      G D F  +I    
Sbjct: 307 VFKFMQEKNCTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYG 366

Query: 549 AGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
             G++  +  ++  +   G   +     AL++S
Sbjct: 367 RCGYVDYSVDIYKGLLRTGLQPTVPTFAALMAS 399



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 124/281 (44%), Gaps = 5/281 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  LI A  +    E A     +M +    P+IVT  +L+ +Y +   LD   + F+ ++
Sbjct: 253 YCTLISAFNRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFMQ 312

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
                PD   +NS++ ++ N G      ++   M  +G     + +  L+  + +CG V 
Sbjct: 313 EKNCTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGYVD 372

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            +  I   +     QPT+ +   L+ +  + G   Q       M   G +  D C A +I
Sbjct: 373 YSVDIYKGLLRTGLQPTVPTFAALMASLAREGRWQQCEKVSQEMAEAGLQLSDACHAGLI 432

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEP--GPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
            +Y       +    + ELEK   +P  G    T ++ +  +  + NEA+  L ++ + G
Sbjct: 433 HSYANSGQFFQLRKYIDELEKSAKQPLSGILCKTFVLAYC-KCCMDNEAQLALNQLYDNG 491

Query: 498 EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
            +P  K+  ++  M A+ G  ++A++ L   E +K Q+ PD
Sbjct: 492 HSPDIKVFNAMISMCAKRGWIERAVKLLE--EIRKAQLKPD 530



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 60/113 (53%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+  + +E     AE ++ +M   G  P+++T   L++ Y+K G +D A   F  + 
Sbjct: 534 YNCLMSMYGREGMYHKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMV 593

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           +   +PD   +N+++ +Y + G  K  +S+++ M   G + ++  + ALL  +
Sbjct: 594 AARVRPDNFTFNTLVGSYSSLGLYKEALSVIEYMTEHGCQPTQITFKALLDGY 646



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/260 (22%), Positives = 116/260 (44%), Gaps = 3/260 (1%)

Query: 218 LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           LQP+   +  L+  L RE   Q   KV++  ++E   Q +   ++ LI ++A        
Sbjct: 386 LQPTVPTFAALMASLAREGRWQQCEKVSQ-EMAEAGLQLSDACHAGLIHSYANSGQFFQL 444

Query: 277 ERILKKMNENGIVP-DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
            + + ++ ++   P   +     V  Y K    + A+ A   L  +G  PD KV+N+MI 
Sbjct: 445 RKYIDELEKSAKQPLSGILCKTFVLAYCKCCMDNEAQLALNQLYDNGHSPDIKVFNAMIS 504

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
                G  +  + L++ +  + ++     Y  L+  + + G    A ++ + MR     P
Sbjct: 505 MCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYHKAEEVMSEMRRAGKAP 564

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
            L +   L+ +Y + G  D A   F  M+    +PD+    +++ +Y    L  +AL+++
Sbjct: 565 NLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNFTFNTLVGSYSSLGLYKEALSVI 624

Query: 456 LELEKDGFEPGPATYTVLVD 475
             + + G +P   T+  L+D
Sbjct: 625 EYMTEHGCQPTQITFKALLD 644



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 74/160 (46%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L +     +++ ++ +I   AK   +E A ++L+++ +  + PD VT   L+ MY + G 
Sbjct: 487 LYDNGHSPDIKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGM 546

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
             +A+E    +R  G  P+   YN+++ +Y   G+      +   M+ + +      +  
Sbjct: 547 YHKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNFTFNT 606

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAY 407
           L+ S++  G  + A  +   M     QPT  +   L++ Y
Sbjct: 607 LVGSYSSLGLYKEALSVIEYMTEHGCQPTQITFKALLDGY 646



 Score = 46.6 bits (109), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 83/197 (42%), Gaps = 3/197 (1%)

Query: 391 EEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKK-NLLD 449
           E +   + + T L+    +A   D+  + F+ M R G + +      M+  YGK+ +  D
Sbjct: 68  ESYSLDVYAYTSLISILSRARRFDEGITLFETMQREGQRGNAVTYNVMLDLYGKRGDSWD 127

Query: 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLC 509
           +  +L  E++     P   TY  ++    +     EA +L  ++ E G  P      +L 
Sbjct: 128 RIQSLFQEMKDLEISPDDYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNALL 187

Query: 510 DMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
           D+Y + G+ K+A + L  +EA         +  +I      G   +A  +   + ++G  
Sbjct: 188 DVYGKGGMHKEASELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLC 247

Query: 570 ASERLKVALISSQTFNR 586
             E     LIS+  FNR
Sbjct: 248 PDEFTYCTLISA--FNR 262


>gi|168059281|ref|XP_001781632.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666946|gb|EDQ53588.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 871

 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 124/284 (43%), Gaps = 8/284 (2%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++ LI   ++    ED++R+  +M   GI  DI T   L+    K G ++ A     ++R
Sbjct: 309 FNSLIAVCSRGGLWEDSQRVFAEMQRRGIEQDIFTFNTLIDAVCKGGQMELAASIMTTMR 368

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
                P+   Y++MI  Y   G  +  +SL   M  SG+      Y  L+  +A+ G   
Sbjct: 369 GKNISPNVVTYSTMIDGYGKLGCFEEAISLYHDMKESGVRPDRVSYNTLIDIYAKLGRFD 428

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A      M     +  + +   L++AYG+ G    A   FD M   G  P+    +++I
Sbjct: 429 DALIACKDMERVGLKADVVTYNALIDAYGKQGKYKDAACLFDKMKGEGLVPNVLTYSALI 488

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            +Y K  +     N+  E ++ G +P    Y+ L+D   +  L+ +A  LL ++++ G  
Sbjct: 489 DSYSKAGMHQDVSNVFTEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQ 548

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERI 543
           P      SL D Y R G   K       LEA K  M P+  ++I
Sbjct: 549 PNIVTYNSLIDAYGRYGQADK-------LEAVKANM-PNSVQKI 584



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 101/224 (45%), Gaps = 35/224 (15%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  YS +ID + K  C E+A  +   M E+G+ PD V+   L+ +Y+K G  D A  A 
Sbjct: 375 NVVTYSTMIDGYGKLGCFEEAISLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALIAC 434

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + +   G + D   YN++I AY   G+ K    L D M                      
Sbjct: 435 KDMERVGLKADVVTYNALIDAYGKQGKYKDAACLFDKM---------------------- 472

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
              +G G + N++          + + L+++Y +AG      + F    R G KPD    
Sbjct: 473 ---KGEGLVPNVL----------TYSALIDSYSKAGMHQDVSNVFTEFKRAGLKPDVVLY 519

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
           +S+I +  K  L++ A+ LL E+ + G +P   TY  L+D  GR
Sbjct: 520 SSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAYGR 563



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 120/268 (44%), Gaps = 1/268 (0%)

Query: 256 NVRDYSKLIDAHAKENC-LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA 314
           N+  Y+ +IDA  K    L+ A  I  +M + G+ PD +T   L+ + S+ G  + ++  
Sbjct: 269 NLITYNTIIDACGKGGVDLKQALDIFDEMQKEGVEPDRITFNSLIAVCSRGGLWEDSQRV 328

Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
           F  ++  G + D   +N++I A    GQ +L  S++  M    I  +   Y  ++  + +
Sbjct: 329 FAEMQRRGIEQDIFTFNTLIDAVCKGGQMELAASIMTTMRGKNISPNVVTYSTMIDGYGK 388

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
            G    A  + + M+    +P   S   L++ Y + G  D A      M R+G K D   
Sbjct: 389 LGCFEEAISLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALIACKDMERVGLKADVVT 448

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
             ++I AYGK+     A  L  +++ +G  P   TY+ L+D   +  +  +   +  +  
Sbjct: 449 YNALIDAYGKQGKYKDAACLFDKMKGEGLVPNVLTYSALIDSYSKAGMHQDVSNVFTEFK 508

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKAL 522
             G  P   +  SL D   + G+ + A+
Sbjct: 509 RAGLKPDVVLYSSLIDSCCKCGLVEDAV 536



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 62/290 (21%), Positives = 127/290 (43%), Gaps = 1/290 (0%)

Query: 295 STVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMI 354
           +++++    + G ++ A + F   +  GF  +   Y++M+ AY  +G+ +  + +   M 
Sbjct: 203 ASIMISTLGRLGKVEIALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMK 262

Query: 355 TSGIERSEEIYLALLRSFAQCG-DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDP 413
            +G + +   Y  ++ +  + G D++ A  I + M+ E  +P   +   L+    + G  
Sbjct: 263 KAGCKPNLITYNTIIDACGKGGVDLKQALDIFDEMQKEGVEPDRITFNSLIAVCSRGGLW 322

Query: 414 DQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVL 473
           + ++  F  M R G + D     ++I A  K   ++ A +++  +      P   TY+ +
Sbjct: 323 EDSQRVFAEMQRRGIEQDIFTFNTLIDAVCKGGQMELAASIMTTMRGKNISPNVVTYSTM 382

Query: 474 VDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE 533
           +D  G+L    EA  L   + E G  P      +L D+YA+ G    AL A   +E    
Sbjct: 383 IDGYGKLGCFEEAISLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALIACKDMERVGL 442

Query: 534 QMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQT 583
           +     +  +I+     G  +DA  +   M+ +G   +     ALI S +
Sbjct: 443 KADVVTYNALIDAYGKQGKYKDAACLFDKMKGEGLVPNVLTYSALIDSYS 492


>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
 gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
          Length = 596

 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 113/251 (45%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E+    N+  ++ LIDA  KE    +AE++   M +  I PDI T   LV+ +     LD
Sbjct: 285 EKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLD 344

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
           +AK+ FE + S    PD   YN++I  +  + + + G  L   M   G+      Y  L+
Sbjct: 345 KAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 404

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
           +     GD   A ++   M  +   P + + ++L++     G  ++A   FDYM +   K
Sbjct: 405 QGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIK 464

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
            D     +MI    K   +D   +L   L   G +P   TY  ++  L   +L+ EA  L
Sbjct: 465 LDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYAL 524

Query: 490 LGKISELGEAP 500
           L K+ E G  P
Sbjct: 525 LKKMKEDGPLP 535



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/281 (22%), Positives = 121/281 (43%), Gaps = 7/281 (2%)

Query: 198 ILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKVAELVLSE---ESF 253
           + S  +  D S LL++  E  + P+ + +  L+D   ++     F  AE +  +    S 
Sbjct: 267 LCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGK---FVEAEKLYDDMIKRSI 323

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
             ++  Y+ L++     + L+ A+++ + M      PD+VT   L+  + K+  ++   E
Sbjct: 324 DPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTE 383

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            F  +   G   D   Y ++I    + G       +   M++ G+      Y  LL    
Sbjct: 384 LFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLC 443

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
             G +  A ++ + M+  E +  +   T ++E   +AG  D     F  +   G KP+  
Sbjct: 444 NNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVV 503

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
              +MI+    K LL +A  LL ++++DG  P   TY  L+
Sbjct: 504 TYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLI 544



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 76/376 (20%), Positives = 149/376 (39%), Gaps = 10/376 (2%)

Query: 219 QPSRIDWINLLDRLREQNTQLYFKVAELV-----LSEESFQTNVRDYSKLIDAHAKENCL 273
           +P  I +  L+  L   N     K +E V     + +   Q N+  Y  +++   K    
Sbjct: 149 RPDTITFTTLIHGLFLHN-----KASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDT 203

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           + A  +L KM    I  D+V    ++    K  ++D A   F+ + + G +P+   Y+S+
Sbjct: 204 DLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSL 263

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           I    + G+      L+  MI   I  +   + AL+ +F + G    A ++ + M     
Sbjct: 264 ISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSI 323

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
            P + +   LV  +      D+A+  F++M+     PD     ++I  + K   ++    
Sbjct: 324 DPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTE 383

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
           L  E+   G      TYT L+  L      + A+++  ++   G  P       L D   
Sbjct: 384 LFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLC 443

Query: 514 RAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASER 573
             G  +KAL+   +++  + ++    +  +I G+   G + D   +   +  +G   +  
Sbjct: 444 NNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVV 503

Query: 574 LKVALISSQTFNRQRQ 589
               +IS     R  Q
Sbjct: 504 TYNTMISGLCSKRLLQ 519



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 69/320 (21%), Positives = 135/320 (42%), Gaps = 6/320 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E  ++ +   ++ LI      N   +A  ++ +M + G  P++VT  V+V+   K G+
Sbjct: 143 MVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGD 202

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            D A      + +   + D  ++N++I +          ++L   M T GI  +   Y +
Sbjct: 203 TDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSS 262

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+      G    A Q+ + M  ++  P L +   L++A+ + G   +A   +D MI+  
Sbjct: 263 LISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRS 322

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLL-LELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
             PD     S++  +   + LDKA  +    + KD F P   TY  L+    + + + + 
Sbjct: 323 IDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCF-PDVVTYNTLIKGFCKSKRVEDG 381

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERII 544
            +L  ++S  G         +L       G    A +   F +   + + PD   +  ++
Sbjct: 382 TELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKV--FKQMVSDGVPPDIMTYSILL 439

Query: 545 NGLLAGGFLQDAQRVHGLME 564
           +GL   G L+ A  V   M+
Sbjct: 440 DGLCNNGKLEKALEVFDYMQ 459



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 69/315 (21%), Positives = 132/315 (41%), Gaps = 8/315 (2%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           ++ +++KL+ A AK    +    + +KM    IV  + T  +L++ + +   +  A    
Sbjct: 46  SIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALL 105

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G++P     +S++  Y +  +    ++LVD M+  G       +  L+      
Sbjct: 106 GKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLH 165

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
                A  + + M     QP L +  ++V    + GD D A +  + M     + D    
Sbjct: 166 NKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIF 225

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I +  K   +D ALNL  E+E  G  P   TY+ L+  L      ++A QLL  + E
Sbjct: 226 NTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIE 285

Query: 496 LGEAPPFKIQVSLCDMYARAG--IEKKALQALGFLEAKKEQMGPDDF--ERIINGLLAGG 551
               P      +L D + + G  +E + L    + +  K  + PD F    ++NG     
Sbjct: 286 KKINPNLVTFNALIDAFVKEGKFVEAEKL----YDDMIKRSIDPDIFTYNSLVNGFCMHD 341

Query: 552 FLQDAQRVHGLMEAQ 566
            L  A+++   M ++
Sbjct: 342 RLDKAKQMFEFMVSK 356



 Score = 47.0 bits (110), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 60/138 (43%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           ++  YS L+D       LE A  +   M ++ I  DI   T ++    KAG +D   + F
Sbjct: 431 DIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLF 490

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
            SL   G +P+   YN+MI    +    +   +L+  M   G   +   Y  L+R+  + 
Sbjct: 491 CSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRD 550

Query: 376 GDVRGAGQITNIMRIEEF 393
           GD   + ++   MR   F
Sbjct: 551 GDKAASAELIREMRSCRF 568


>gi|224069250|ref|XP_002302937.1| predicted protein [Populus trichocarpa]
 gi|222844663|gb|EEE82210.1| predicted protein [Populus trichocarpa]
          Length = 564

 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 126/268 (47%), Gaps = 4/268 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E   + NV  Y+ LI    +E  + +AE+++ +M +  + P+++T   L+  +   GN
Sbjct: 293 MRERGVEANVVTYNTLIGGMCREERVWEAEKLVDQMKKAAVSPNLITYNTLIGGFCDVGN 352

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           LD+A    + L+S+G  P    YN +I  Y  AG  K    L   M   GI  S+     
Sbjct: 353 LDKASSLLDQLKSNGLSPSLVTYNILIEGYSKAGNWKGVADLAREMEGRGISPSKVTCTV 412

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+ ++ +  ++  A QI + M      P +    +L+      G+  ++   F  M  + 
Sbjct: 413 LIDAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGLCMKGNMKESSKLFRSMGEMH 472

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            +P D    +MI  Y K++   +AL LL E+E  G  P  A+Y+ ++  L +     EAE
Sbjct: 473 VEPSDVIYNTMIHGYCKEDNSYRALRLLREMEAKGLVPNVASYSSIIGVLCKDGKWEEAE 532

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARA 515
            LL K+ EL   P      S+ +M ++A
Sbjct: 533 VLLDKMIELQLKP----SASILNMISKA 556



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 108/254 (42%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           +L +     NV  Y+ LID   K   +E A     KM E G+V +  T TVL++   K G
Sbjct: 187 LLQDMGLSPNVVIYTTLIDGCCKNGDIERARLFFDKMGEMGLVANQYTFTVLINGLFKKG 246

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
                 + FE ++ +G  P+   YN ++  Y   G+      L D M   G+E +   Y 
Sbjct: 247 LKKDGFDLFEKMKINGLFPNLYTYNCLMNEYCGEGKICRAFDLFDEMRERGVEANVVTYN 306

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+    +   V  A ++ + M+     P L +   L+  +   G+ D+A S  D +   
Sbjct: 307 TLIGGMCREERVWEAEKLVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSN 366

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G  P       +I  Y K        +L  E+E  G  P   T TVL+D   RLQ + +A
Sbjct: 367 GLSPSLVTYNILIEGYSKAGNWKGVADLAREMEGRGISPSKVTCTVLIDAYVRLQEMEKA 426

Query: 487 EQLLGKISELGEAP 500
            Q+   + + G  P
Sbjct: 427 FQIYSSMEKFGLVP 440



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 152/349 (43%), Gaps = 18/349 (5%)

Query: 218 LQPSRIDWINLLDRLRE----QNTQLYF-KVAELVLSEESFQTNVRDYSKLIDAHAKENC 272
           L P+ + +  L+D   +    +  +L+F K+ E+ L       N   ++ LI+   K+  
Sbjct: 193 LSPNVVIYTTLIDGCCKNGDIERARLFFDKMGEMGLV-----ANQYTFTVLINGLFKKGL 247

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
            +D   + +KM  NG+ P++ T   L++ Y   G + RA + F+ +R  G + +   YN+
Sbjct: 248 KKDGFDLFEKMKINGLFPNLYTYNCLMNEYCGEGKICRAFDLFDEMRERGVEANVVTYNT 307

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I       +      LVD M  + +  +   Y  L+  F   G++  A  + + ++   
Sbjct: 308 LIGGMCREERVWEAEKLVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSNG 367

Query: 393 FQPTLESCTLLVEAYGQAGD----PDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLL 448
             P+L +  +L+E Y +AG+     D AR     M   G  P       +I AY +   +
Sbjct: 368 LSPSLVTYNILIEGYSKAGNWKGVADLARE----MEGRGISPSKVTCTVLIDAYVRLQEM 423

Query: 449 DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSL 508
           +KA  +   +EK G  P    Y VL+  L     + E+ +L   + E+   P   I  ++
Sbjct: 424 EKAFQIYSSMEKFGLVPDVYVYGVLIHGLCMKGNMKESSKLFRSMGEMHVEPSDVIYNTM 483

Query: 509 CDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQ 557
              Y +     +AL+ L  +EAK        +  II  L   G  ++A+
Sbjct: 484 IHGYCKEDNSYRALRLLREMEAKGLVPNVASYSSIIGVLCKDGKWEEAE 532



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 53/264 (20%), Positives = 113/264 (42%), Gaps = 3/264 (1%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F+ N+  ++ L+ +  + NC E A     ++ E  +  D+ +  +++    + GNLD++ 
Sbjct: 126 FRPNI--FNSLLGSLVRSNCFEKAWLFFNELKER-VKFDVYSFGIMIKGCCENGNLDKSF 182

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           +    L+  G  P+  +Y ++I      G  +      D M   G+  ++  +  L+   
Sbjct: 183 QLLGLLQDMGLSPNVVIYTTLIDGCCKNGDIERARLFFDKMGEMGLVANQYTFTVLINGL 242

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + G  +    +   M+I    P L +   L+  Y   G   +A   FD M   G + + 
Sbjct: 243 FKKGLKKDGFDLFEKMKINGLFPNLYTYNCLMNEYCGEGKICRAFDLFDEMRERGVEANV 302

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               ++I    ++  + +A  L+ +++K    P   TY  L+     +  +++A  LL +
Sbjct: 303 VTYNTLIGGMCREERVWEAEKLVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQ 362

Query: 493 ISELGEAPPFKIQVSLCDMYARAG 516
           +   G +P       L + Y++AG
Sbjct: 363 LKSNGLSPSLVTYNILIEGYSKAG 386


>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1043

 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 162/360 (45%), Gaps = 26/360 (7%)

Query: 203  KEEDPSPLLAEWKELL----QPSRIDW-INLLDRLREQ----NTQLY-FKVAELV----- 247
            KEE   PLL  +K LL    +  +ID+ + + + L+E     +T +Y   V  LV     
Sbjct: 660  KEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRV 719

Query: 248  ---------LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVL 298
                     +  ++   ++  Y+ L+D   K   LE+A  +  KM E G  PD+V  T L
Sbjct: 720  DEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSL 779

Query: 299  VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
            + +  K G L  A   F ++      PD   Y+S+I +    G+ +      +  I+ G 
Sbjct: 780  MDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGC 839

Query: 359  ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418
              +  +Y +L+ SF + G V  A ++   M+  +  P + +   L+    +AG  + A  
Sbjct: 840  TPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEK 899

Query: 419  NFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLG 478
              + M ++G  PD      +I   GK  ++D+A +    +++ G  P   T+T L++ LG
Sbjct: 900  LLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLG 959

Query: 479  RLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
            ++  + EA +L   + E G  P       L D+  RAG   +A  A+ F E K +   PD
Sbjct: 960  KVDKLLEACELFDSMEEEGYNPSVVTYNVLIDILGRAGKVHEA--AMIFHEMKVKGCMPD 1017



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 83/373 (22%), Positives = 170/373 (45%), Gaps = 15/373 (4%)

Query: 197 KILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTN 256
           K+L + K+ +  P +  +  L     +D +    RL E  + L        + ++  + +
Sbjct: 549 KLLEVMKKHECIPTVVTYTTL-----VDGLGKAGRLDEAVSLLR------EMEKQGCEPS 597

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           V  YS L+ +  K +  E++  +  +M   G V D+ T +++++   K+ ++D+A + F 
Sbjct: 598 VVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFG 657

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
            ++  G +P    Y +++ + V   +    + + + +  S +     +Y  ++    +  
Sbjct: 658 RMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSN 717

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
            V  A ++ + M+ +   P L + T L++  G++G  ++A + F  M   GH+PD     
Sbjct: 718 RVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYT 777

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
           S++   GK   L  AL +   + K    P   TY+ L+D LG+   + EA          
Sbjct: 778 SLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISK 837

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQ 554
           G  P   +  SL D + + G+  +AL+   F E ++ Q  P+   +  +++GL   G L 
Sbjct: 838 GCTPNVGVYSSLIDSFGKKGMVDRALEL--FEEMQRRQCPPNIVTYNNLLSGLAKAGRLN 895

Query: 555 DAQRVHGLMEAQG 567
            A+++   ME  G
Sbjct: 896 VAEKLLEEMEKVG 908



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 154/326 (47%), Gaps = 4/326 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + EE  +  + +Y  L+ +  K+  ++ A +I  ++ E+ +VPD     ++V+   K+  
Sbjct: 659 MKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNR 718

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D A +  +S+++    PD   Y S++     +G+ +   ++   M   G E     Y +
Sbjct: 719 VDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTS 778

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    + G +  A  I   M  +   P + + + L+++ G+ G  ++A   F+  I  G
Sbjct: 779 LMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKG 838

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P+    +S+I ++GKK ++D+AL L  E+++    P   TY  L+  L +   +N AE
Sbjct: 839 CTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAE 898

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIIN 545
           +LL ++ ++G  P       L D   + G+  +A     F   K++ + PD   F  +I 
Sbjct: 899 KLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESY--FKRMKEKGIVPDVITFTSLIE 956

Query: 546 GLLAGGFLQDAQRVHGLMEAQGFAAS 571
            L     L +A  +   ME +G+  S
Sbjct: 957 SLGKVDKLLEACELFDSMEEEGYNPS 982



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 156/340 (45%), Gaps = 35/340 (10%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LID   K    + A  + K+M + G+VP++ T  +++ +  KAG    A + F  L+
Sbjct: 395 YNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLK 454

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG----IER--------------- 360
             G  PD   YN++I      GQ    ++++  M+  G    I R               
Sbjct: 455 EQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKGGECIISRDSNAGHEGTIEGADR 514

Query: 361 ------------SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYG 408
                        E  Y  L+ +F   G V  A ++  +M+  E  PT+ + T LV+  G
Sbjct: 515 TVEYPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLG 574

Query: 409 QAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPA 468
           +AG  D+A S    M + G +P     +S++A++ K++  +++L+L  E+ + G     +
Sbjct: 575 KAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVS 634

Query: 469 TYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFL 528
           TY+++++ L +   +++A  + G++ E G  P      +L     +      ALQ   F 
Sbjct: 635 TYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQI--FN 692

Query: 529 EAKKEQMGPDDF--ERIINGLLAGGFLQDAQRVHGLMEAQ 566
           E ++  + PD F    ++NGL+    + +A ++   M+ Q
Sbjct: 693 ELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQ 732



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 133/299 (44%), Gaps = 4/299 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+ A      +++A ++L+ M ++  +P +VT T LV    KAG LD A      + 
Sbjct: 531 YNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREME 590

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +P    Y+S++ ++    Q +  +SL D M+  G       Y  ++    +  DV 
Sbjct: 591 KQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDVD 650

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  +   M+ E  +P L +   L+ +  +    D A   F+ +      PD      M+
Sbjct: 651 QALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMV 710

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
               K N +D+A  L+  ++     P   TYT L+D LG+   + EA  +  K++E G  
Sbjct: 711 NGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHE 770

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDA 556
           P      SL D+  + G    AL  + F    K++  PD   +  +I+ L   G +++A
Sbjct: 771 PDVVAYTSLMDVLGKGGKLSHAL--IIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEA 827



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 142/342 (41%), Gaps = 31/342 (9%)

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           V  ++ LIDA  K   +++A +    M      P++VT T LV+  +KAG L+ A E F 
Sbjct: 322 VHTFTVLIDALVKSGNIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFV 381

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
            ++ +   PD   YN++I     AG+  +   L   M   G+  +   Y  ++    + G
Sbjct: 382 EMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAG 441

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI------------ 424
               A Q+ + ++ +   P + +   L++  G+ G  D+  +    M+            
Sbjct: 442 RQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKGGECIISRDS 501

Query: 425 ------------------RLGHKPDDRCT-ASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
                              LG K     T  ++++A+     +D+A+ LL  ++K    P
Sbjct: 502 NAGHEGTIEGADRTVEYPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIP 561

Query: 466 GPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
              TYT LVD LG+   ++EA  LL ++ + G  P      SL   + +   E+++L   
Sbjct: 562 TVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLF 621

Query: 526 GFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
             +  K        +  +IN L     +  A  V G M+ +G
Sbjct: 622 DEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEG 663



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 109/276 (39%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           +E  + ++   + L+      N +  A  I  +M   G  P       ++ +  K G   
Sbjct: 210 KEGHRISMHLLTSLLRTFGSTNNVSGALEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYH 269

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A   F  L     QPD + +   + ++  +G+       +  MI SGI+     +  L+
Sbjct: 270 SAVIVFGKLGQFRIQPDAQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLI 329

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
            +  + G++  A +  N M+     P + + T LV    +AG  ++A   F  M      
Sbjct: 330 DALVKSGNIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCS 389

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     ++I   GK    D A  L  E++  G  P   TY +++  LG+     EA QL
Sbjct: 390 PDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQL 449

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
              + E G  P      +L D+  + G   K L  +
Sbjct: 450 FHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAII 485



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 134/310 (43%), Gaps = 21/310 (6%)

Query: 277 ERILKKMNENGIVPDIVTSTVLVHM----YSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           ER+  K+N  G+V D+V +   +H+    ++ AG  D            G+      Y  
Sbjct: 141 ERLKFKLNP-GLVCDVVVNQKDLHLAKCFFTWAGQQD------------GYSHTVGTYTL 187

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           MI     A +    + ++  M   G   S  +  +LLR+F    +V GA +I N M+   
Sbjct: 188 MIKRLAGAQETDAVVQILTAMWKEGHRISMHLLTSLLRTFGSTNNVSGALEIFNQMKSFG 247

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P+      ++E   + G    A   F  + +   +PD +     + ++ +   LD A 
Sbjct: 248 CNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRIFVHSFNRSGRLDPAA 307

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
             + E+ K G +PG  T+TVL+D L +   I+EA +    +  L  +P      +L +  
Sbjct: 308 EPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCSPNVVTYTTLVNGL 367

Query: 513 ARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAA 570
           A+AG  ++A +   F+E K+    PD   +  +I+GL   G    A  +   M+ +G   
Sbjct: 368 AKAGRLEEACEV--FVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVP 425

Query: 571 SERLKVALIS 580
           + R    +IS
Sbjct: 426 NLRTYNIMIS 435



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 65/304 (21%), Positives = 131/304 (43%), Gaps = 4/304 (1%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           ++ +   V  Y+ +I   A     +   +IL  M + G    +   T L+  +    N+ 
Sbjct: 175 QDGYSHTVGTYTLMIKRLAGAQETDAVVQILTAMWKEGHRISMHLLTSLLRTFGSTNNVS 234

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A E F  ++S G  P   +YN ++   V  G     + +   +    I+   + +   +
Sbjct: 235 GALEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRIFV 294

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
            SF + G +  A +    M      P + + T+L++A  ++G+ D+A   F+ M  L   
Sbjct: 295 HSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCS 354

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           P+     +++    K   L++A  + +E++++   P    Y  L+D LG+    + A  L
Sbjct: 355 PNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGL 414

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF--ERIINGL 547
             ++ + G  P  +    +  +  +AG + +A Q   F + K++   PD F    +I+ L
Sbjct: 415 FKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQL--FHDLKEQGAVPDVFTYNTLIDVL 472

Query: 548 LAGG 551
             GG
Sbjct: 473 GKGG 476



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 97/232 (41%), Gaps = 35/232 (15%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L +   Q + + +   + +  +   L+ A   +++M ++GI P + T TVL+    K+GN
Sbjct: 278 LGQFRIQPDAQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGN 337

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D A + F  +++    P+   Y +++     AG+               +E + E+++ 
Sbjct: 338 IDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGR---------------LEEACEVFVE 382

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
                               M+     P   +   L++  G+AG+ D A   F  M   G
Sbjct: 383 --------------------MKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRG 422

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
             P+ R    MI+  GK     +A  L  +L++ G  P   TY  L+D LG+
Sbjct: 423 LVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGK 474


>gi|410109897|gb|AFV61028.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           macropoda]
          Length = 412

 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 120/261 (45%), Gaps = 6/261 (2%)

Query: 218 LQPSRIDWINLLD---RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           L+PS + +  L++   RL + +     K A L       Q +V  YS LI+   KE+ ++
Sbjct: 154 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLA---SGVQPDVYTYSVLINGLCKESKMD 210

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           DA  +  +M   G+VP+ VT T L+  + K G +D A E ++ + S    PD   YN++I
Sbjct: 211 DANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLI 270

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
                 G  K    L+D M    ++  +  Y  L+    + GD+  A +    M  E  +
Sbjct: 271 YGLCKKGDLKQAHHLIDEMSMKELKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIR 330

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
               + T L+    Q G    A      M+ +G KPD R    +I  + KK  + K   L
Sbjct: 331 LDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPDSRTYTMIINEFCKKGDVWKGSKL 390

Query: 455 LLELEKDGFEPGPATYTVLVD 475
           L E+++DG  P   TY VL++
Sbjct: 391 LKEMQRDGHVPSVVTYNVLMN 411



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 86/191 (45%)

Query: 285 ENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPK 344
           E G    +    +L+H + K G++  A+  F+++   G +P    YN+++  Y+  G   
Sbjct: 116 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 175

Query: 345 LGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
            G  L   M+ SG++     Y  L+    +   +  A ++ + M ++   P   + T L+
Sbjct: 176 EGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLI 235

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
           + + + G  D A   +  M+     PD     ++I    KK  L +A +L+ E+     +
Sbjct: 236 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKELK 295

Query: 465 PGPATYTVLVD 475
           P   TYT L+D
Sbjct: 296 PDKITYTTLID 306



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/267 (20%), Positives = 110/267 (41%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E  +  ++  ++ L+    K+  +  A+ +   + + G+ P +V+   L++ Y + G+LD
Sbjct: 116 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 175

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
                  ++ + G QPD   Y+ +I       +      L D M+  G+  +   +  L+
Sbjct: 176 EGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLI 235

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               + G V  A +I   M  +   P L +   L+    + GD  QA    D M     K
Sbjct: 236 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKELK 295

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     ++I    K+  LD A      + ++        YT L+  L +     +AE++
Sbjct: 296 PDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKM 355

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAG 516
           L ++  +G  P  +    + + + + G
Sbjct: 356 LREMLNVGLKPDSRTYTMIINEFCKKG 382


>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
 gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 87/369 (23%), Positives = 158/369 (42%), Gaps = 10/369 (2%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESF-----QTNVRDYSKLIDAHAKENC 272
           LQP  + +  L++ L +       K A+ V   + F     Q  V  Y+ +I+   K   
Sbjct: 161 LQPDAVTFNTLINGLCKVG-----KFAQAVEFFDDFEASGCQPTVYTYTTIINGLCKIGE 215

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
              A  + KKM E G  P++VT  +L+    K   ++ A + F  +++    PD   YNS
Sbjct: 216 TTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNS 275

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I    N  + K   +L++ M +  I  +   +  L+ +  + G V  A  +   M    
Sbjct: 276 LIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMG 335

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
            +P + + + L+  Y    +  +AR  FD MI  G KPD      +I  Y K   +D+A 
Sbjct: 336 VEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAK 395

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
            L  E+   G  P    Y  L+  L +L  + EA+ L   +   G  P       L D +
Sbjct: 396 QLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGF 455

Query: 513 ARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572
            + G   KA +    +++   +     +  +I+ +   G L+DA+++   +  QG   + 
Sbjct: 456 CKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNV 515

Query: 573 RLKVALISS 581
           ++   +I++
Sbjct: 516 QIYTTIINN 524



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 142/308 (46%), Gaps = 15/308 (4%)

Query: 198 ILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKVAEL-----VLSEE 251
           + +  + ++ S LL E   L + P+   +  L+D + ++      KV+E       ++E 
Sbjct: 280 LCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICKEG-----KVSEAQGVFKTMTEM 334

Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311
             + +V  YS L+  ++    + +A ++   M   G  PD  +  +L+  Y KA  +D A
Sbjct: 335 GVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEA 394

Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
           K+ F  +   G  PD   YN++I      G+ +    L   M ++G       Y  LL  
Sbjct: 395 KQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDG 454

Query: 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
           F + G +  A ++  +M+    +P +    +L++A  + G+   AR  F  +   G  P+
Sbjct: 455 FCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPN 514

Query: 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE--AEQL 489
            +   ++I    K+ LLD+AL     +E DG  P   +Y V++   G LQ  +E  A QL
Sbjct: 515 VQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPDEFSYNVIIR--GFLQYKDESRAAQL 572

Query: 490 LGKISELG 497
           +G++ + G
Sbjct: 573 IGEMRDRG 580



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 122/290 (42%), Gaps = 6/290 (2%)

Query: 281 KKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNA 340
           K+M   G+ PDI T ++L+  +S    +D A   F  +   G QPD   +N++I      
Sbjct: 119 KQMELAGLSPDIYTLSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKV 178

Query: 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
           G+    +   D    SG + +   Y  ++    + G+   A  +   M     QP + + 
Sbjct: 179 GKFAQAVEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTY 238

Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
            +L+++  +    ++A   F YM      PD     S+I          +A  LL E+  
Sbjct: 239 NILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTS 298

Query: 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKK 520
               P   T+ VLVD + +   ++EA+ +   ++E+G  P      SL  MY  + +  +
Sbjct: 299 LNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSL--MYGYS-LRME 355

Query: 521 ALQALGFLEAK-KEQMGPDDFER--IINGLLAGGFLQDAQRVHGLMEAQG 567
            ++A    +A   +   PD F    +I G      + +A+++   M  QG
Sbjct: 356 IVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQG 405


>gi|222617300|gb|EEE53432.1| hypothetical protein OsJ_36514 [Oryza sativa Japonica Group]
          Length = 607

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 121/242 (50%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           ++  Y+  IDA  K   +E A ++L  M   G+ P++VT + L+  YSK    + A +  
Sbjct: 86  DIYTYNTFIDAICKCGNMELAMQVLLDMEAKGVKPNVVTYSTLIDGYSKLEKYEEALKLC 145

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E ++S   Q D+  YN+++  YV AG+     ++ D M   GIE+    Y +L+  + + 
Sbjct: 146 EKMKSMRIQLDRVCYNTLLAIYVKAGKYAEIANVCDEMEELGIEKDTVTYNSLINGYGKQ 205

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +     +   MR     P++ + + L++ Y +AG    A + +      G KPD    
Sbjct: 206 GRLDIVSILVQDMRKRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKPDVVLF 265

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
           +S I    K  L++ AL+LL ++ + G +P   TY  ++D  G+ +++ E +  +G +  
Sbjct: 266 SSFIDTLAKNGLIEWALSLLNDMTEMGIKPNVVTYNAIIDAFGKSKVMMEDDSEVGDMGI 325

Query: 496 LG 497
           +G
Sbjct: 326 VG 327



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 116/267 (43%), Gaps = 1/267 (0%)

Query: 260 YSKLIDAHAKENC-LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318
           Y+ +IDA  K    L       ++M ++G+ PD  T   L+   S+ G+L+ A+  F+ +
Sbjct: 19  YNAVIDACGKGGVDLRFTLGYFRQMLKDGLCPDRKTFNSLLAACSRVGHLEDARAVFDEM 78

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
              G   D   YN+ I A    G  +L M ++  M   G++ +   Y  L+  +++    
Sbjct: 79  IHLGIGRDIYTYNTFIDAICKCGNMELAMQVLLDMEAKGVKPNVVTYSTLIDGYSKLEKY 138

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             A ++   M+    Q        L+  Y +AG   +  +  D M  LG + D     S+
Sbjct: 139 EEALKLCEKMKSMRIQLDRVCYNTLLAIYVKAGKYAEIANVCDEMEELGIEKDTVTYNSL 198

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           I  YGK+  LD    L+ ++ K G  P   TY+ L+D   +  +  +A  +     E G 
Sbjct: 199 INGYGKQGRLDIVSILVQDMRKRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGL 258

Query: 499 APPFKIQVSLCDMYARAGIEKKALQAL 525
            P   +  S  D  A+ G+ + AL  L
Sbjct: 259 KPDVVLFSSFIDTLAKNGLIEWALSLL 285


>gi|168045050|ref|XP_001774992.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673739|gb|EDQ60258.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 385

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 79/348 (22%), Positives = 152/348 (43%), Gaps = 14/348 (4%)

Query: 241 FKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
           ++V ELV ++E +  ++  Y KL+   AK     +A  +   + E+ + P     T L+ 
Sbjct: 18  WQVFELVRAQEWYTADLSTYLKLLTMLAKAKQAAEASNVFDCLLEDKLRPTTAIFTALLT 77

Query: 301 MYSKAGNLDRAKEAFESLRSH-GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
           +++++    +A E FES+R + G  PDK  Y +MI     AG       + D M+  G++
Sbjct: 78  VFTQSNQFKKALEIFESMRLYEGCVPDKYTYTAMIKGCCEAGLYVQARKIFDEMMIEGVK 137

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
            S   Y  L+  + + G  R   ++ + M      P   +   L+  +G      +    
Sbjct: 138 PSIVTYNILIHGYGKAGLFREVERVLSTMEANNVAPDTVTWNTLIRVFGLNCKIPEMEQA 197

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
           ++ ++R G +PD     S+I+AYG   L +K  ++   +++  +     TY ++++  GR
Sbjct: 198 YEGLLRQGLQPDMVTLNSLISAYGTAGLFEKMESVTQYMQRYNYPMTRITYNIIMEAYGR 257

Query: 480 LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG----IEKKALQALGFLEAKKE-- 533
             ++++ E+   ++      P      S+   Y R G    +EK   QA  F  A     
Sbjct: 258 AGMVDQMEETWKRMKAEFVKPNSSTFCSMLSAYGRHGYWHNVEKVMRQARYFDAADTAVY 317

Query: 534 QMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
               D F+R  N        +D +++   M+ +G A  +     LI +
Sbjct: 318 NAAIDAFQRAQN-------FEDMEKIFEEMKLKGHAPDDVTYSILIGA 358



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 106/242 (43%), Gaps = 7/242 (2%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           E  + ++  Y+ LI  + K     + ER+L  M  N + PD VT   L+ ++     +  
Sbjct: 134 EGVKPSIVTYNILIHGYGKAGLFREVERVLSTMEANNVAPDTVTWNTLIRVFGLNCKIPE 193

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
            ++A+E L   G QPD    NS+I AY  AG  +   S+   M       +   Y  ++ 
Sbjct: 194 MEQAYEGLLRQGLQPDMVTLNSLISAYGTAGLFEKMESVTQYMQRYNYPMTRITYNIIME 253

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
           ++ + G V    +    M+ E  +P   +   ++ AYG+ G       N + ++R     
Sbjct: 254 AYGRAGMVDQMEETWKRMKAEFVKPNSSTFCSMLSAYGRHG----YWHNVEKVMRQARYF 309

Query: 431 DDRCTA---SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
           D   TA   + I A+ +    +    +  E++  G  P   TY++L+    R++ +++A 
Sbjct: 310 DAADTAVYNAAIDAFQRAQNFEDMEKIFEEMKLKGHAPDDVTYSILIGAYERIRRVDKAR 369

Query: 488 QL 489
            L
Sbjct: 370 DL 371


>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
 gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
          Length = 457

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 109/255 (42%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           Q NV  Y  L+    K   L++A  +  +M   G  PD V   VL+  +SK G++  A  
Sbjct: 119 QPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYR 178

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            FE +   G  P    YNS++  +   G+     SL   M+  G   +   +  LL  F 
Sbjct: 179 LFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFC 238

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           + GD+  A ++   MR     P + S   L+      G P +A+     MIR G  PD  
Sbjct: 239 KMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIV 298

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
               +I  Y K   LD A+ L  E+ K G EP   +Y+ ++D L R   +  A  +   +
Sbjct: 299 SYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDM 358

Query: 494 SELGEAPPFKIQVSL 508
              G AP   + + L
Sbjct: 359 IANGSAPDAAVVIPL 373



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 141/326 (43%), Gaps = 4/326 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N   Y  L+ +  +    E+A  + + M   G  P++ + ++L+    +   +D A E  
Sbjct: 51  NTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELL 110

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G QP+   Y S++      G+ K  + L   M+  G      +Y  L+  F++ 
Sbjct: 111 NEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKK 170

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           GD+  A ++   M  +   PT+ +   L+  + + G+  + +S F  M+R G  P+    
Sbjct: 171 GDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTF 230

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            +++  + K   + +A  L LE+   G  P   +Y  L+  +      +EA++LL ++  
Sbjct: 231 NNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIR 290

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF--ERIINGLLAGGFL 553
            G  P       L D Y+++G    A++   F E  K  + PD F    II+ L   G +
Sbjct: 291 SGVGPDIVSYNILIDGYSKSGALDHAIKL--FYEIPKSGLEPDAFSYSTIIDCLCRAGKV 348

Query: 554 QDAQRVHGLMEAQGFAASERLKVALI 579
             A  V   M A G A    + + L+
Sbjct: 349 GAAFVVFKDMIANGSAPDAAVVIPLV 374



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 108/250 (43%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
            V  Y+ L+   +++      + + K M   G VP+I T   L+  + K G++  A   F
Sbjct: 191 TVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLF 250

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +RS G  PD   YN++I    + G+P     L+  MI SG+      Y  L+  +++ 
Sbjct: 251 LEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKS 310

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A ++   +     +P   S + +++   +AG    A   F  MI  G  PD    
Sbjct: 311 GALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVV 370

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             ++    +   L ++  L   + K    P    Y +L+  L + +  ++  ++  +++E
Sbjct: 371 IPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTE 430

Query: 496 LGEAPPFKIQ 505
            G +P  +I 
Sbjct: 431 RGFSPDVEIS 440



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 103/240 (42%), Gaps = 4/240 (1%)

Query: 330 YNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389
           YN ++     +G+        + M+ +G   +   Y  LLRS  Q      A  +   M 
Sbjct: 20  YNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMA 79

Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD 449
            +   P + S ++L+    +    D+A    + MI  GH+P+     S+++   K   L 
Sbjct: 80  AQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLK 139

Query: 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLC 509
           +A++L   +   G  P    Y VL+D   +   + EA +L  ++ E G  P      SL 
Sbjct: 140 EAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLL 199

Query: 510 DMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQG 567
             ++R G E   +Q+L F +  ++   P+   F  +++G    G + +A R+   M + G
Sbjct: 200 SGFSRKG-EFGRVQSL-FKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLG 257



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/271 (21%), Positives = 105/271 (38%), Gaps = 8/271 (2%)

Query: 293 VTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDM 352
           ++   L+ + +K+G  D     +  + + G  P+   Y  ++ +   A + +   S+   
Sbjct: 18  LSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRG 77

Query: 353 MITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGD 412
           M   G   +   Y  L+    +   V  A ++ N M     QP + +   L+    + G 
Sbjct: 78  MAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGK 137

Query: 413 PDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTV 472
             +A   F  M+  G  PD      +I  + KK  + +A  L  E+ + G  P   TY  
Sbjct: 138 LKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNS 197

Query: 473 LVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG--IEKKALQALGFLEA 530
           L+    R       + L   +   G  P      +L D + + G  +E   L    FLE 
Sbjct: 198 LLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRL----FLEM 253

Query: 531 KKEQMGPD--DFERIINGLLAGGFLQDAQRV 559
           +     PD   +  +I G+ + G   +AQR+
Sbjct: 254 RSLGCPPDVVSYNTLIRGMCSKGKPHEAQRL 284


>gi|242050480|ref|XP_002462984.1| hypothetical protein SORBIDRAFT_02g035800 [Sorghum bicolor]
 gi|241926361|gb|EER99505.1| hypothetical protein SORBIDRAFT_02g035800 [Sorghum bicolor]
          Length = 668

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 97/413 (23%), Positives = 174/413 (42%), Gaps = 28/413 (6%)

Query: 197 KILSLEKEEDPSPLLAEWKELLQ--------PSRIDWINLLDRLREQNTQ---------- 238
           ++LSL +E D  P LA +  LL         P       LL  LRE   +          
Sbjct: 176 RLLSLLREHDFLPDLASYSHLLASLLNTRDPPDAALLERLLGDLRESRLEPDAPLFSDLI 235

Query: 239 -LYFKVA------ELVLSEESFQTNVRD--YSKLIDAHAKENCLEDAERILKKMNENG-I 288
             + + A      EL+ S ++     R    + LI A      + +AE +  +    G I
Sbjct: 236 SAFARAALPDAALELLASAQAIGLTPRSNAVTALISALGSAGRVAEAEALFLEFFLAGEI 295

Query: 289 VPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMS 348
            P       L+  Y + G+L  A++  + +   G  PD+  Y+ ++ AY  AG+ +    
Sbjct: 296 KPRTRAYNALLKGYVRIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARI 355

Query: 349 LVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYG 408
           L+  M   G++ S  ++  +L  F   GD + A  +   M+    +P      ++++ +G
Sbjct: 356 LLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFG 415

Query: 409 QAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPA 468
           +      A   FD M     +PD     ++I A+ K    D+A+ L  E+ +    PG  
Sbjct: 416 KYNCLGHAMDAFDRMREEEIEPDVVTWNTLIDAHCKGGRHDRAMELFEEMRESNCPPGTT 475

Query: 469 TYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFL 528
           TY ++++ LG  +     E +L ++ E G  P      +L D+Y R+G  K+A+  +  +
Sbjct: 476 TYNIMINLLGEQERWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAM 535

Query: 529 EAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
           +A   +  P  +  ++N     G    A  V   M+A G   S  +  +LI++
Sbjct: 536 KADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMKADGLEVSILVLNSLINA 588



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 68/330 (20%), Positives = 148/330 (44%), Gaps = 40/330 (12%)

Query: 245 ELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK 304
           E  L+ E  +   R Y+ L+  + +   L++AE++L +M++ G+ PD  T ++LV  Y++
Sbjct: 288 EFFLAGE-IKPRTRAYNALLKGYVRIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTR 346

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
           AG  + A+   + + + G +P   V++ ++  + + G  +   +++  M  SG+      
Sbjct: 347 AGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHF 406

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA-------- 416
           Y  ++ +F +   +  A    + MR EE +P + +   L++A+ + G  D+A        
Sbjct: 407 YNVMIDTFGKYNCLGHAMDAFDRMREEEIEPDVVTWNTLIDAHCKGGRHDRAMELFEEMR 466

Query: 417 -------RSNFDYMIRL--------------------GHKPDDRCTASMIAAYGKKNLLD 449
                   + ++ MI L                    G  P+     +++  YG+     
Sbjct: 467 ESNCPPGTTTYNIMINLLGEQERWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYK 526

Query: 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLC 509
           +A++ +  ++ DG +P P  Y  LV+   +  L + A  ++  +   G      +  SL 
Sbjct: 527 EAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMKADGLEVSILVLNSLI 586

Query: 510 DMYARAGIEKKALQALGFLEAKKEQ-MGPD 538
           + +   G +++ ++A   L+  KE  + PD
Sbjct: 587 NAF---GEDRRVVEAFSVLQFMKENGLRPD 613



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 111/249 (44%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +ID   K NCL  A     +M E  I PD+VT   L+  + K G  DRA E FE +R
Sbjct: 407 YNVMIDTFGKYNCLGHAMDAFDRMREEEIEPDVVTWNTLIDAHCKGGRHDRAMELFEEMR 466

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
                P    YN MI       + +   +++  M   G+  +   Y  L+  + + G  +
Sbjct: 467 ESNCPPGTTTYNIMINLLGEQERWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYK 526

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A      M+ +  +P+      LV AY Q G  D A +    M   G +       S+I
Sbjct: 527 EAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMKADGLEVSILVLNSLI 586

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            A+G+   + +A ++L  ++++G  P   TYT L+  L R++  ++   +  ++   G A
Sbjct: 587 NAFGEDRRVVEAFSVLQFMKENGLRPDVITYTTLMKALIRVEQFDKVPVIYEEMITSGCA 646

Query: 500 PPFKIQVSL 508
           P  K +  L
Sbjct: 647 PDRKARAML 655



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 111/229 (48%), Gaps = 4/229 (1%)

Query: 215 KELLQPSRIDWINLLDRLREQNTQLYFKVAELV--LSEESFQTNVRDYSKLIDAHAKENC 272
           +E ++P  + W  L+D         + +  EL   + E +       Y+ +I+   ++  
Sbjct: 432 EEEIEPDVVTWNTLIDA--HCKGGRHDRAMELFEEMRESNCPPGTTTYNIMINLLGEQER 489

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
            E  E +L +M E G+VP+I+T T LV +Y ++G    A +  E++++ G +P   +Y++
Sbjct: 490 WEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHA 549

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           ++ AY   G     +++V  M   G+E S  +  +L+ +F +   V  A  +   M+   
Sbjct: 550 LVNAYAQRGLADHALNVVKAMKADGLEVSILVLNSLINAFGEDRRVVEAFSVLQFMKENG 609

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441
            +P + + T L++A  +    D+    ++ MI  G  PD +  A + +A
Sbjct: 610 LRPDVITYTTLMKALIRVEQFDKVPVIYEEMITSGCAPDRKARAMLRSA 658


>gi|300681581|emb|CBI75525.1| PPR repeat domain containing protein [Triticum aestivum]
          Length = 728

 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 123/275 (44%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +   +F  +  +YS LI A+ +   L++A  + + M  +GI P++VT T+LVH +S  G 
Sbjct: 414 MVHHNFVPDAYNYSSLIYAYCRHRQLKEALEVFELMICDGICPNVVTCTILVHGFSNEGL 473

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A    + +R  G  P+   Y  +I       +P     +   MI  G      +Y  
Sbjct: 474 IGEAFLFLDKVRQFGVVPNLCTYRVIINGLCKVNKPNDVWGIFADMIKRGYVPDTVLYSI 533

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++  F +  D++ A ++   M  E  +P + + T L+          +  + F +MI  G
Sbjct: 534 IIDGFVKALDLQEAFRLYYKMVDEGTKPNIFTYTSLINGLCHDDKLPEVMTLFKHMIGEG 593

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD     S+IA Y K++ +  AL +  E+E +G       YT L+    ++  ++ A+
Sbjct: 594 LTPDRILYTSLIACYCKRSNMKAALEIFREMETEGLSADSFVYTCLIGGFSKVLAMDGAQ 653

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522
             + ++   G  P       L   Y + G EKKA+
Sbjct: 654 LFMEEMMNKGLTPTVVTYTDLIIGYFKIGDEKKAM 688



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 137/335 (40%), Gaps = 40/335 (11%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F  +V  YS L+D   K+  +     +L +M  NGI P++V+ + L+H   +AG ++ A 
Sbjct: 314 FVPDVHSYSILVDGLCKQGDVLTGYYMLVEMARNGITPNLVSYSSLLHGLCRAGRVELAF 373

Query: 313 EAFESLRSHGFQ-----------------------------------PDKKVYNSMIMAY 337
           E F+ L+  GF+                                   PD   Y+S+I AY
Sbjct: 374 ELFKRLKDQGFKHDHIVYSIVLHGCCQHLDLEICYDLWNDMVHHNFVPDAYNYSSLIYAY 433

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
               Q K  + + ++MI  GI  +      L+  F+  G +  A    + +R     P L
Sbjct: 434 CRHRQLKEALEVFELMICDGICPNVVTCTILVHGFSNEGLIGEAFLFLDKVRQFGVVPNL 493

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
            +  +++    +   P+     F  MI+ G+ PD    + +I  + K   L +A  L  +
Sbjct: 494 CTYRVIINGLCKVNKPNDVWGIFADMIKRGYVPDTVLYSIIIDGFVKALDLQEAFRLYYK 553

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI 517
           +  +G +P   TYT L++ L     + E   L   +   G  P   +  SL   Y +   
Sbjct: 554 MVDEGTKPNIFTYTSLINGLCHDDKLPEVMTLFKHMIGEGLTPDRILYTSLIACYCKRSN 613

Query: 518 EKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
            K AL+   F E + E +  D F   +   L GGF
Sbjct: 614 MKAALEI--FREMETEGLSADSF---VYTCLIGGF 643



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/339 (19%), Positives = 138/339 (40%), Gaps = 4/339 (1%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           +L +  +  N   ++ +I     +  +  A  +   M + G VPD+ + ++LV    K G
Sbjct: 273 MLCQRGYPCNSYCFNAVIHGFCHDGQVHKAVEVFDGMKKCGFVPDVHSYSILVDGLCKQG 332

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           ++         +  +G  P+   Y+S++     AG+ +L   L   +   G +    +Y 
Sbjct: 333 DVLTGYYMLVEMARNGITPNLVSYSSLLHGLCRAGRVELAFELFKRLKDQGFKHDHIVYS 392

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            +L    Q  D+     + N M    F P   + + L+ AY +     +A   F+ MI  
Sbjct: 393 IVLHGCCQHLDLEICYDLWNDMVHHNFVPDAYNYSSLIYAYCRHRQLKEALEVFELMICD 452

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G  P+      ++  +  + L+ +A   L ++ + G  P   TY V+++ L ++   N+ 
Sbjct: 453 GICPNVVTCTILVHGFSNEGLIGEAFLFLDKVRQFGVVPNLCTYRVIINGLCKVNKPNDV 512

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF--ERII 544
             +   + + G  P   +   + D + +A   ++A +   + +   E   P+ F    +I
Sbjct: 513 WGIFADMIKRGYVPDTVLYSIIIDGFVKALDLQEAFRL--YYKMVDEGTKPNIFTYTSLI 570

Query: 545 NGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQT 583
           NGL     L +   +   M  +G      L  +LI+   
Sbjct: 571 NGLCHDDKLPEVMTLFKHMIGEGLTPDRILYTSLIACYC 609



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 86/384 (22%), Positives = 152/384 (39%), Gaps = 51/384 (13%)

Query: 228 LLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLID--AHAKENCLEDAERILKKMNE 285
           LL  L E N  +Y +     +       N+  YS L+    H  + CLE+A+ +L +M  
Sbjct: 182 LLKGLVEGNQIMYVRSLFDDMKISGPSPNIYSYSVLMSMYTHGAKLCLEEAQELLSEMEV 241

Query: 286 NGIVPDIVTS-----------------------------------TVLVHMYSKAGNLDR 310
            G+ P+  T                                      ++H +   G + +
Sbjct: 242 EGVRPNAATYGTYLYGLCRAKQVKSAWNFLQMLCQRGYPCNSYCFNAVIHGFCHDGQVHK 301

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A E F+ ++  GF PD   Y+ ++      G    G  ++  M  +GI  +   Y +LL 
Sbjct: 302 AVEVFDGMKKCGFVPDVHSYSILVDGLCKQGDVLTGYYMLVEMARNGITPNLVSYSSLLH 361

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
              + G V  A ++   ++ + F+      ++++    Q  D +     ++ M+     P
Sbjct: 362 GLCRAGRVELAFELFKRLKDQGFKHDHIVYSIVLHGCCQHLDLEICYDLWNDMVHHNFVP 421

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           D    +S+I AY +   L +AL +   +  DG  P   T T+LV       LI EA   L
Sbjct: 422 DAYNYSSLIYAYCRHRQLKEALEVFELMICDGICPNVVTCTILVHGFSNEGLIGEAFLFL 481

Query: 491 GKISELGEAP---PFKIQVS-LCDMYARAGIEKKALQALG-FLEAKKEQMGPDD--FERI 543
            K+ + G  P    +++ ++ LC +        K     G F +  K    PD   +  I
Sbjct: 482 DKVRQFGVVPNLCTYRVIINGLCKV-------NKPNDVWGIFADMIKRGYVPDTVLYSII 534

Query: 544 INGLLAGGFLQDAQRVHGLMEAQG 567
           I+G +    LQ+A R++  M  +G
Sbjct: 535 IDGFVKALDLQEAFRLYYKMVDEG 558



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 79/174 (45%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS +ID   K   L++A R+  KM + G  P+I T T L++       L      F+ + 
Sbjct: 531 YSIIIDGFVKALDLQEAFRLYYKMVDEGTKPNIFTYTSLINGLCHDDKLPEVMTLFKHMI 590

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  PD+ +Y S+I  Y      K  + +   M T G+     +Y  L+  F++   + 
Sbjct: 591 GEGLTPDRILYTSLIACYCKRSNMKAALEIFREMETEGLSADSFVYTCLIGGFSKVLAMD 650

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           GA      M  +   PT+ + T L+  Y + GD  +A   ++ M++ G  PD +
Sbjct: 651 GAQLFMEEMMNKGLTPTVVTYTDLIIGYFKIGDEKKAMVMYNSMLQAGIAPDAK 704



 Score = 42.7 bits (99), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 7/94 (7%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           LS +SF      Y+ LI   +K   ++ A+  +++M   G+ P +VT T L+  Y K G+
Sbjct: 629 LSADSFV-----YTCLIGGFSKVLAMDGAQLFMEEMMNKGLTPTVVTYTDLIIGYFKIGD 683

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAG 341
             +A   + S+   G  PD K+  S I+   N G
Sbjct: 684 EKKAMVMYNSMLQAGIAPDAKL--SCILGLGNDG 715


>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 754

 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 132/301 (43%), Gaps = 9/301 (2%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N   Y+ LI    KEN +E+A  + + +   GI+PD+ T   L+       N   A E F
Sbjct: 364 NTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELF 423

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E +RS G +PD+  YN +I +  + G+    ++++  M  SG  RS   Y  L+  F + 
Sbjct: 424 EEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKA 483

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
             +R A +I + M +        +   L++   ++   + A    D MI  G KPD    
Sbjct: 484 NKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTY 543

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            S++  + +   + KA +++  +  +G EP   TY  L+  L +   +  A +LL  I  
Sbjct: 544 NSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQM 603

Query: 496 LGEA-PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ--MGPD--DFERIINGLLAG 550
            G A  P      +  ++ +    +K  +A+       EQ    PD   +  +  GL  G
Sbjct: 604 KGIALTPHAYNPVIQGLFRK----RKTTEAINLFREMLEQNEAAPDAVSYRIVFRGLCNG 659

Query: 551 G 551
           G
Sbjct: 660 G 660



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 148/342 (43%), Gaps = 21/342 (6%)

Query: 231 RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKM-NENGIV 289
           R+REQ       + E   S  +   NV     ++    KE  +EDA   +++M N++G  
Sbjct: 245 RIREQ-------MVEFGCSWSNVSVNV-----IVHGFCKEGRVEDALNFIQEMSNQDGFF 292

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL 349
           PD  T   LV+   KAG++  A E  + +   G+ PD   YNS+I      G+ K  +  
Sbjct: 293 PDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEF 352

Query: 350 VDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409
           +D MIT     +   Y  L+ +  +   V  A ++  ++  +   P + +   L++    
Sbjct: 353 LDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCL 412

Query: 410 AGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPAT 469
             +   A   F+ M   G +PD+     +I +   K  LD+ALN+L ++E  G      T
Sbjct: 413 TRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVIT 472

Query: 470 YTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALG--F 527
           Y  L+D   +   I EAE++  ++   G +       +L D   ++   + A Q +    
Sbjct: 473 YNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMI 532

Query: 528 LEAKKEQMGPDDF--ERIINGLLAGGFLQDAQRVHGLMEAQG 567
           +E +K    PD F    ++     GG ++ A  +   M + G
Sbjct: 533 MEGQK----PDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNG 570



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 139/332 (41%), Gaps = 5/332 (1%)

Query: 243 VAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMY 302
           V   ++ +   + +   Y+++++     N L+  E    KM+  GI PD+ T  VL+   
Sbjct: 140 VVHWMIDDFGLKPDTHFYNRMLNLLVDGNNLKLVEIAHAKMSVWGIKPDVSTFNVLIKAL 199

Query: 303 SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE 362
            +A  L  A    E + S+G  PD+K + +++  Y+  G     + + + M+  G   S 
Sbjct: 200 CRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALRIREQMVEFGCSWSN 259

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEE-FQPTLESCTLLVEAYGQAGDPDQARSNFD 421
                ++  F + G V  A      M  ++ F P   +   LV    +AG    A    D
Sbjct: 260 VSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMD 319

Query: 422 YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ 481
            M++ G+ PD     S+I+   K   + +A+  L ++      P   TY  L+  L +  
Sbjct: 320 VMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKEN 379

Query: 482 LINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF- 540
            + EA +L   ++  G  P      SL          + A++   F E + +   PD+F 
Sbjct: 380 QVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMEL--FEEMRSKGCEPDEFT 437

Query: 541 -ERIINGLLAGGFLQDAQRVHGLMEAQGFAAS 571
              +I+ L + G L +A  +   ME  G A S
Sbjct: 438 YNMLIDSLCSKGKLDEALNMLKQMELSGCARS 469



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 79/386 (20%), Positives = 155/386 (40%), Gaps = 36/386 (9%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           L+P    +  +L+ L + N     ++A   +S    + +V  ++ LI A  + + L  A 
Sbjct: 150 LKPDTHFYNRMLNLLVDGNNLKLVEIAHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAI 209

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLD---------------------------- 309
            +L+ M   G+VPD  T T ++  Y + G+LD                            
Sbjct: 210 LMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGF 269

Query: 310 ----RAKEAFESLR----SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS 361
               R ++A   ++      GF PD+  +N+++     AG  K  + ++D+M+  G +  
Sbjct: 270 CKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPD 329

Query: 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421
              Y +++    + G+V+ A +  + M   +  P   +   L+    +    ++A     
Sbjct: 330 VYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELAR 389

Query: 422 YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ 481
            +   G  PD     S+I           A+ L  E+   G EP   TY +L+D L    
Sbjct: 390 VLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKG 449

Query: 482 LINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFE 541
            ++EA  +L ++   G A       +L D + +A   ++A +    +E          + 
Sbjct: 450 KLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYN 509

Query: 542 RIINGLLAGGFLQDAQRVHGLMEAQG 567
            +I+GL     ++DA ++   M  +G
Sbjct: 510 TLIDGLCKSRRVEDASQLMDQMIMEG 535



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 79/345 (22%), Positives = 139/345 (40%), Gaps = 37/345 (10%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           V+ +E +  +V  Y+ +I    K   +++A   L +M      P+ VT   L+    K  
Sbjct: 320 VMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKEN 379

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            ++ A E    L S G  PD   +NS+I         ++ M L + M + G E  E  Y 
Sbjct: 380 QVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYN 439

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+ S    G +  A    N+++    Q  L  C               ARS   Y    
Sbjct: 440 MLIDSLCSKGKLDEA---LNMLK----QMELSGC---------------ARSVITY---- 473

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
                     ++I  + K N + +A  +  E+E  G      TY  L+D L + + + +A
Sbjct: 474 ---------NTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDA 524

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
            QL+ ++   G+ P      SL   + R G  KKA   +  + +   +     +  +I+G
Sbjct: 525 SQLMDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISG 584

Query: 547 LLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQPT 591
           L   G ++ A ++   ++ +G A +      +I  Q   R+R+ T
Sbjct: 585 LCKAGRVEVASKLLRSIQMKGIALTPHAYNPVI--QGLFRKRKTT 627


>gi|42572723|ref|NP_974457.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332646343|gb|AEE79864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 590

 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 135/281 (48%), Gaps = 6/281 (2%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           VLS+     NV  Y+ L++++ +     +AE I ++M  +G  P  +T  +++  + +  
Sbjct: 171 VLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQSSGPEPSAITYQIILKTFVEGD 230

Query: 307 NLDRAKEAFESL---RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363
               A+E FE+L   +    +PD+K+Y+ MI  Y  AG  +    +   M+  G+ +S  
Sbjct: 231 KFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTV 290

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
            Y +L+ SF      +   +I + M+  + QP + S  LL++AYG+A   ++A S F+ M
Sbjct: 291 TYNSLM-SFET--SYKEVSKIYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEM 347

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483
           +  G +P  +    ++ A+    ++++A  +   + +D   P   +YT ++        +
Sbjct: 348 LDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDM 407

Query: 484 NEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQA 524
             AE+   +I   G  P      +L   YA+A   +K ++ 
Sbjct: 408 EGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEV 448



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 145/328 (44%), Gaps = 12/328 (3%)

Query: 169 AEKIHERGEMILPEEPKPITGKCKLIT----DKILSLEKEEDPSPLLAEWKELLQPSRID 224
           AE I  R +   PE P  IT +  L T    DK    E EE    LL E K  L+P +  
Sbjct: 200 AEAIFRRMQSSGPE-PSAITYQIILKTFVEGDKFK--EAEEVFETLLDEKKSPLKPDQKM 256

Query: 225 WINLLDRLREQ-NTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKM 283
           +  ++   ++  N +   KV   ++ +   Q+ V  Y+ L+   + E   ++  +I  +M
Sbjct: 257 YHMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTV-TYNSLM---SFETSYKEVSKIYDQM 312

Query: 284 NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343
             + I PD+V+  +L+  Y +A   + A   FE +   G +P  K YN ++ A+  +G  
Sbjct: 313 QRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMV 372

Query: 344 KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403
           +   ++   M    I      Y  +L ++    D+ GA +    ++++ F+P + +   L
Sbjct: 373 EQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTL 432

Query: 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGF 463
           ++ Y +A D ++    ++ M   G K +     +++ A G+      AL    E+E  G 
Sbjct: 433 IKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASGRCKNFGSALGWYKEMESCGV 492

Query: 464 EPGPATYTVLVDWLGRLQLINEAEQLLG 491
            P      VL+        + EA++L G
Sbjct: 493 PPDQKAKNVLLSLASTQDELEEAKELTG 520


>gi|225442663|ref|XP_002279821.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Vitis vinifera]
          Length = 725

 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 104/412 (25%), Positives = 173/412 (41%), Gaps = 23/412 (5%)

Query: 170 EKIHE-RGEMILPEEPKPITGKCKLITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWIN 227
           EK+HE   EM    +  P T     +      L +++    L  E KE  L P+   +  
Sbjct: 211 EKVHELYNEMCNEGDCLPDTVTYSALIAAFGKLGRDDSAISLFDEMKENGLHPTAKIYTT 270

Query: 228 LLDRLREQNTQLYFKVAE------LV--LSEESFQTNVRDYSKLIDAHAKENCLEDAERI 279
           +L         +YFK+        LV  + E+     V  Y++LI    K   +E+A  I
Sbjct: 271 ILG--------IYFKLGRVEKALGLVQEMKEKGCALTVYTYTELIKGVGKAGKVEEAYSI 322

Query: 280 LKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA-YV 338
              M + G  PD+V    L+++  KAG L  A + FE + S    P+   YN++I A + 
Sbjct: 323 FMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIKALFE 382

Query: 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398
           +  +        + M  +G+  S   Y  L+  F +   V  A  +   M  + F P   
Sbjct: 383 SKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPA 442

Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
           +   L+ A G+A   + A   F  +         R  A MI   GK   L +A++L  E+
Sbjct: 443 AYCSLINALGKAKRYEAANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEM 502

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
           +K G  P    Y  L+  + R+ + +EA  LL  + E G  P       + + +AR G  
Sbjct: 503 KKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNGFARTGGP 562

Query: 519 KKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
           K A++   F   K  ++ PD   +  ++  L   G  ++A ++   M ++GF
Sbjct: 563 KGAIEM--FTRMKNSKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKGF 612



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 128/291 (43%), Gaps = 2/291 (0%)

Query: 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318
           D S+++    K   +  A  I  ++      P   T   ++ M  + G+ ++  E +  +
Sbjct: 161 DLSEIVKVLGKAKMVNKALSIFYQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEM 220

Query: 319 RSHG-FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
            + G   PD   Y+++I A+   G+    +SL D M  +G+  + +IY  +L  + + G 
Sbjct: 221 CNEGDCLPDTVTYSALIAAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGR 280

Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
           V  A  +   M+ +    T+ + T L++  G+AG  ++A S F  M++ G KPD     +
Sbjct: 281 VEKALGLVQEMKEKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINN 340

Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL-INEAEQLLGKISEL 496
           +I   GK   L  A+ L  E+E     P   TY  ++  L   +   +EA     K+ E 
Sbjct: 341 LINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKEN 400

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
           G  P       L D + +    +KAL  L  ++ K     P  +  +IN L
Sbjct: 401 GVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINAL 451



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 94/221 (42%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS LID   K N +E A  +L++M+E G  P       L++   KA   + A E F+ LR
Sbjct: 409 YSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANELFQELR 468

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
            +      +VY  MI      G+    + L + M   G       Y AL+    + G   
Sbjct: 469 ENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTD 528

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  +   M      P L S  +++  + + G P  A   F  M     KPD     +++
Sbjct: 529 EAHSLLRTMEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVL 588

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
               +  + ++A  L+ E+   GFE    TY+ +++ +G++
Sbjct: 589 GCLSRAGMFEEAAKLMKEMNSKGFEYDLITYSSILEAVGKI 629



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 83/197 (42%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E+ F      Y  LI+A  K    E A  + +++ EN          V++    K G 
Sbjct: 432 MDEKGFAPCPAAYCSLINALGKAKRYEAANELFQELRENCGYSSARVYAVMIKHLGKCGR 491

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L  A + F  ++  G  PD   YN+++   V  G      SL+  M  +G       +  
Sbjct: 492 LSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNI 551

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           +L  FA+ G  +GA ++   M+  + +P + S   ++    +AG  ++A      M   G
Sbjct: 552 ILNGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKG 611

Query: 428 HKPDDRCTASMIAAYGK 444
            + D    +S++ A GK
Sbjct: 612 FEYDLITYSSILEAVGK 628


>gi|414884149|tpg|DAA60163.1| TPA: hypothetical protein ZEAMMB73_830458 [Zea mays]
          Length = 378

 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 136/296 (45%), Gaps = 4/296 (1%)

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           ED  +I K+MN  G  PD+      +    KAG++++ +  FE ++ +GF PD + Y+ +
Sbjct: 6   EDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSIL 65

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           I     AGQ +   S+   M   G       Y A++  F + G V  A +    M+++  
Sbjct: 66  IHGLTKAGQARETSSIFHAMKQRGFALDARAYNAVVDGFCKSGKVDKAYEALEEMKVKHV 125

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
            PT+ +   +++   +    D+A   F+     G + +    +S+I  +GK   +D+A  
Sbjct: 126 PPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYL 185

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
           +L E+ K G  P   T+  L+D L + + INEA      + E+  +P       L +   
Sbjct: 186 ILEEMMKKGLAPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGLC 245

Query: 514 RAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQG 567
           R     KA   + + E +K+ + P+   +  +I+GL   G + DA  +    +A G
Sbjct: 246 RVQKYNKAF--VFWQEMQKQGLVPNVVTYTTMISGLAKVGNITDACSLFERFKANG 299



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 102/248 (41%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F  +VR YS LI    K     +   I   M + G   D      +V  + K+G +D+A 
Sbjct: 55  FLPDVRSYSILIHGLTKAGQARETSSIFHAMKQRGFALDARAYNAVVDGFCKSGKVDKAY 114

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           EA E ++     P    Y S+I       +      L +   + GIE +  +Y +L+  F
Sbjct: 115 EALEEMKVKHVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGF 174

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + G +  A  I   M  +   P + +   L++A  +A + ++A   F  M  +   P+ 
Sbjct: 175 GKVGRIDEAYLILEEMMKKGLAPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNT 234

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
              + +I    +    +KA     E++K G  P   TYT ++  L ++  I +A  L  +
Sbjct: 235 YTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMISGLAKVGNITDACSLFER 294

Query: 493 ISELGEAP 500
               G  P
Sbjct: 295 FKANGGIP 302



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/287 (20%), Positives = 125/287 (43%), Gaps = 6/287 (2%)

Query: 264 IDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGF 323
           +D   K   +E    I + +   G +PD+ + ++L+H  +KAG        F +++  GF
Sbjct: 31  MDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQRGF 90

Query: 324 QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQ 383
             D + YN+++  +  +G+       ++ M    +  +   Y +++   A+   +  A  
Sbjct: 91  ALDARAYNAVVDGFCKSGKVDKAYEALEEMKVKHVPPTVATYGSIIDGLAKIDRLDEAYM 150

Query: 384 ITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYG 443
           +    + +  +  +   + L++ +G+ G  D+A    + M++ G  P+     S++ A  
Sbjct: 151 LFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLAPNVYTWNSLMDALV 210

Query: 444 KKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFK 503
           K   +++AL     +++    P   TY++L++ L R+Q  N+A     ++ + G  P   
Sbjct: 211 KAEEINEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVV 270

Query: 504 IQVSLCDMYARAGIEKKALQALGFLEAKKEQMG-PD--DFERIINGL 547
              ++    A+ G       A    E  K   G PD   F  +I G+
Sbjct: 271 TYTTMISGLAKVG---NITDACSLFERFKANGGIPDAASFNALIEGM 314



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/276 (19%), Positives = 118/276 (42%), Gaps = 1/276 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + +  F  + R Y+ ++D   K   ++ A   L++M    + P + T   ++   +K   
Sbjct: 85  MKQRGFALDARAYNAVVDGFCKSGKVDKAYEALEEMKVKHVPPTVATYGSIIDGLAKIDR 144

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           LD A   FE  +S G + +  VY+S+I  +   G+      +++ M+  G+  +   + +
Sbjct: 145 LDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLAPNVYTWNS 204

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+ +  +  ++  A      M+  +  P   + ++L+    +    ++A   +  M + G
Sbjct: 205 LMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQG 264

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P+     +MI+   K   +  A +L    + +G  P  A++  L++ +       EA 
Sbjct: 265 LVPNVVTYTTMISGLAKVGNITDACSLFERFKANGGIPDAASFNALIEGMSHANRAIEAY 324

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARA-GIEKKAL 522
            +  +    G     K  +SL D   +A  IE+ A+
Sbjct: 325 HVFEETRLRGCRINVKACISLLDALNKAECIEQAAV 360



 Score = 43.1 bits (100), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 50/250 (20%), Positives = 98/250 (39%), Gaps = 20/250 (8%)

Query: 177 EMILPEEPKPITGKCKLITDKILSLEKEEDPSPLLAEWKE-------LLQPSRIDWINLL 229
           EM +   P P       I D +  +++ ++   L  E K        ++  S ID    +
Sbjct: 119 EMKVKHVP-PTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKV 177

Query: 230 DRLREQNTQLYFKVAELVLSE---ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNEN 286
            R+ E         A L+L E   +    NV  ++ L+DA  K   + +A    + M E 
Sbjct: 178 GRIDE---------AYLILEEMMKKGLAPNVYTWNSLMDALVKAEEINEALICFQSMKEM 228

Query: 287 GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLG 346
              P+  T ++L++   +    ++A   ++ ++  G  P+   Y +MI      G     
Sbjct: 229 KCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMISGLAKVGNITDA 288

Query: 347 MSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA 406
            SL +    +G       + AL+   +       A  +    R+   +  +++C  L++A
Sbjct: 289 CSLFERFKANGGIPDAASFNALIEGMSHANRAIEAYHVFEETRLRGCRINVKACISLLDA 348

Query: 407 YGQAGDPDQA 416
             +A   +QA
Sbjct: 349 LNKAECIEQA 358


>gi|224113413|ref|XP_002316488.1| predicted protein [Populus trichocarpa]
 gi|222865528|gb|EEF02659.1| predicted protein [Populus trichocarpa]
          Length = 941

 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 121/253 (47%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
            V  ++ L+    ++  +E A  IL +M   G+ PD  T T ++H Y+  G+  +A E F
Sbjct: 608 TVHTFNALVLGLVEKRKMEKAVEILDEMALAGVSPDEHTYTTIMHGYAALGDTGKAFEYF 667

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +R+ G Q D   Y +++ A   +G+ +  +++   M    I R+  +Y  L+  +A+ 
Sbjct: 668 TKMRNEGLQLDVFTYEALLKACCKSGRMQSALAVTREMNAQKIPRNTFVYNILIDGWARR 727

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           GD+  A  +   M  E  QP + + T  + A  +AGD  +A    + M   G KP+ +  
Sbjct: 728 GDIWEAADLMQQMNQEGVQPDIHTYTSFINACCKAGDMLRATKTMEEMEAAGVKPNVKTY 787

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I  +   +L +KAL+   EL+  G +P  A Y  L+  L     + EA    G +S 
Sbjct: 788 TTLIHGWANASLPEKALSCFEELKLAGLKPDKAVYHCLMTSLLSRATVAEAYIYSGILSI 847

Query: 496 LGEAPPFKIQVSL 508
             E   F++ V +
Sbjct: 848 CREMIEFELTVDM 860



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/334 (20%), Positives = 145/334 (43%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + EE     +  Y  ++D +      E    + K++ E G  P ++T   L++MY+K G 
Sbjct: 425 MEEEGIDAPLDIYHTMMDGYTMIRNEEKCLIVFKRLKECGFAPSVITYGCLINMYTKIGK 484

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           + +A E  + ++S G + + K Y+ +I  ++         ++ + +I  G++    +Y  
Sbjct: 485 VSKALEVSKMMKSVGIKHNMKTYSMLINGFLKLKDWTNAFAVFEDVIKDGLKPDVVLYNN 544

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++++F   G++  A  +   M+ E  +PT  +   ++  + +AG+  +A   FD M R G
Sbjct: 545 IIKAFCGMGNMDRAIHMVKEMQKERCRPTSRTFMPIIHGFARAGEMRRALEIFDMMRRSG 604

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P      +++    +K  ++KA+ +L E+   G  P   TYT ++     L    +A 
Sbjct: 605 CIPTVHTFNALVLGLVEKRKMEKAVEILDEMALAGVSPDEHTYTTIMHGYAALGDTGKAF 664

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
           +   K+   G         +L     ++G  + AL     + A+K       +  +I+G 
Sbjct: 665 EYFTKMRNEGLQLDVFTYEALLKACCKSGRMQSALAVTREMNAQKIPRNTFVYNILIDGW 724

Query: 548 LAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
              G + +A  +   M  +G         + I++
Sbjct: 725 ARRGDIWEAADLMQQMNQEGVQPDIHTYTSFINA 758



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 126/291 (43%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N++ YS LI+   K     +A  + + + ++G+ PD+V    ++  +   GN+DRA    
Sbjct: 503 NMKTYSMLINGFLKLKDWTNAFAVFEDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHMV 562

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + ++    +P  + +  +I  +  AG+ +  + + DMM  SG   +   + AL+    + 
Sbjct: 563 KEMQKERCRPTSRTFMPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLVEK 622

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
             +  A +I + M +    P   + T ++  Y   GD  +A   F  M   G + D    
Sbjct: 623 RKMEKAVEILDEMALAGVSPDEHTYTTIMHGYAALGDTGKAFEYFTKMRNEGLQLDVFTY 682

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            +++ A  K   +  AL +  E+           Y +L+D   R   I EA  L+ ++++
Sbjct: 683 EALLKACCKSGRMQSALAVTREMNAQKIPRNTFVYNILIDGWARRGDIWEAADLMQQMNQ 742

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
            G  P      S  +   +AG   +A + +  +EA   +     +  +I+G
Sbjct: 743 EGVQPDIHTYTSFINACCKAGDMLRATKTMEEMEAAGVKPNVKTYTTLIHG 793



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 69/327 (21%), Positives = 139/327 (42%), Gaps = 4/327 (1%)

Query: 240 YFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLV 299
           +FK A+    E     N   Y  +I A+ +   ++ AE ++++M E GI   +     ++
Sbjct: 386 WFKKAK----ERHTNLNAYIYGNIIYAYCQACNMDRAEALVREMEEEGIDAPLDIYHTMM 441

Query: 300 HMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
             Y+   N ++    F+ L+  GF P    Y  +I  Y   G+    + +  MM + GI+
Sbjct: 442 DGYTMIRNEEKCLIVFKRLKECGFAPSVITYGCLINMYTKIGKVSKALEVSKMMKSVGIK 501

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
            + + Y  L+  F +  D   A  +   +  +  +P +     +++A+   G+ D+A   
Sbjct: 502 HNMKTYSMLINGFLKLKDWTNAFAVFEDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHM 561

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
              M +   +P  R    +I  + +   + +AL +   + + G  P   T+  LV  L  
Sbjct: 562 VKEMQKERCRPTSRTFMPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLVE 621

Query: 480 LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD 539
            + + +A ++L +++  G +P      ++   YA  G   KA +    +  +  Q+    
Sbjct: 622 KRKMEKAVEILDEMALAGVSPDEHTYTTIMHGYAALGDTGKAFEYFTKMRNEGLQLDVFT 681

Query: 540 FERIINGLLAGGFLQDAQRVHGLMEAQ 566
           +E ++      G +Q A  V   M AQ
Sbjct: 682 YEALLKACCKSGRMQSALAVTREMNAQ 708



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 60/269 (22%), Positives = 115/269 (42%), Gaps = 36/269 (13%)

Query: 241 FKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
           F V E V+ ++  + +V  Y+ +I A      ++ A  ++K+M +    P   T   ++H
Sbjct: 524 FAVFEDVI-KDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKERCRPTSRTFMPIIH 582

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
            +++AG + RA E F+ +R  G  P    +N++++  V   + +  + ++D M  +G+  
Sbjct: 583 GFARAGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLVEKRKMEKAVEILDEMALAGVSP 642

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIE-------EFQPTLESC------------- 400
            E  Y  ++  +A  GD   A +    MR E        ++  L++C             
Sbjct: 643 DEHTYTTIMHGYAALGDTGKAFEYFTKMRNEGLQLDVFTYEALLKACCKSGRMQSALAVT 702

Query: 401 ---------------TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKK 445
                           +L++ + + GD  +A      M + G +PD     S I A  K 
Sbjct: 703 REMNAQKIPRNTFVYNILIDGWARRGDIWEAADLMQQMNQEGVQPDIHTYTSFINACCKA 762

Query: 446 NLLDKALNLLLELEKDGFEPGPATYTVLV 474
             + +A   + E+E  G +P   TYT L+
Sbjct: 763 GDMLRATKTMEEMEAAGVKPNVKTYTTLI 791



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 82/382 (21%), Positives = 159/382 (41%), Gaps = 53/382 (13%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI A+A    +E+A   ++KMNE GI   +VT +++V  ++K GN + A   F+  +
Sbjct: 332 YTSLIHAYAVGRDMEEALSCVRKMNEEGIEMSLVTYSIVVGGFAKFGNAEAADCWFKKAK 391

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE----------------RSEE 363
                 +  +Y ++I AY  A       +LV  M   GI+                R+EE
Sbjct: 392 ERHTNLNAYIYGNIIYAYCQACNMDRAEALVREMEEEGIDAPLDIYHTMMDGYTMIRNEE 451

Query: 364 -------------------IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
                               Y  L+  + + G V  A +++ +M+    +  +++ ++L+
Sbjct: 452 KCLIVFKRLKECGFAPSVITYGCLINMYTKIGKVSKALEVSKMMKSVGIKHNMKTYSMLI 511

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
             + +  D   A + F+ +I+ G KPD     ++I A+     +D+A++++ E++K+   
Sbjct: 512 NGFLKLKDWTNAFAVFEDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKERCR 571

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQA 524
           P   T+  ++    R   +  A ++   +   G  P      +L          +KA++ 
Sbjct: 572 PTSRTFMPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLVEKRKMEKAVEI 631

Query: 525 LGFLEAKKEQMGPDD--FERIINGLLAGGFLQDAQRVHGLMEAQGF-------------- 568
           L   E     + PD+  +  I++G  A G    A      M  +G               
Sbjct: 632 LD--EMALAGVSPDEHTYTTIMHGYAALGDTGKAFEYFTKMRNEGLQLDVFTYEALLKAC 689

Query: 569 AASERLKVALISSQTFNRQRQP 590
             S R++ AL  ++  N Q+ P
Sbjct: 690 CKSGRMQSALAVTREMNAQKIP 711



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 108/254 (42%), Gaps = 39/254 (15%)

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           ++V  Y++ G++ RA++ FES+R+ G  P   VY S+I AY      +  +S V  M   
Sbjct: 299 LMVGYYARRGDMHRARQTFESMRARGIDPSSHVYTSLIHAYAVGRDMEEALSCVRKMNEE 358

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
           GIE S   Y  ++  FA+ G+   A                  C              + 
Sbjct: 359 GIEMSLVTYSIVVGGFAKFGNAEAA-----------------DCWF--------KKAKER 393

Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476
            +N +  I            ++I AY +   +D+A  L+ E+E++G +     Y  ++D 
Sbjct: 394 HTNLNAYIY----------GNIIYAYCQACNMDRAEALVREMEEEGIDAPLDIYHTMMD- 442

Query: 477 LGRLQLINEAEQLL--GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ 534
            G   + NE + L+   ++ E G AP       L +MY + G   KAL+    +++   +
Sbjct: 443 -GYTMIRNEEKCLIVFKRLKECGFAPSVITYGCLINMYTKIGKVSKALEVSKMMKSVGIK 501

Query: 535 MGPDDFERIINGLL 548
                +  +ING L
Sbjct: 502 HNMKTYSMLINGFL 515



 Score = 43.9 bits (102), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 43/87 (49%)

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
           +P+     L+V  Y + GD  +AR  F+ M   G  P      S+I AY     +++AL+
Sbjct: 291 KPSRREFGLMVGYYARRGDMHRARQTFESMRARGIDPSSHVYTSLIHAYAVGRDMEEALS 350

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRL 480
            + ++ ++G E    TY+++V    + 
Sbjct: 351 CVRKMNEEGIEMSLVTYSIVVGGFAKF 377


>gi|357122825|ref|XP_003563115.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Brachypodium distachyon]
          Length = 410

 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 153/332 (46%), Gaps = 9/332 (2%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V   + L+  + +   + +A+R+   M   G+ P+ VT T L+H Y   G  ++    F
Sbjct: 37  DVAACTALVHGYCRSGDVAEAQRVFDVMPRLGLTPNEVTFTALIHGYFIHGRREKGLALF 96

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E +R  G +P+   YN ++  +   G+ +    L + M   GI R+   Y  L+    + 
Sbjct: 97  EKMRIGGIEPNLYTYNILVGEWCRTGEFERARLLFEEMPAKGITRNVVSYNTLIAGLCRY 156

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
             ++ A Q+  +MR E  +P++ +  LLV+ YG+AG    A    + M   G++P     
Sbjct: 157 RKMKDATQLLELMRREGIRPSVVTFNLLVDGYGKAGKMSNALHFSNQMRMAGYQPSAVTY 216

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++IA + +   + +A     ++++ G  P   TYT+L+D   R   +++A ++   + +
Sbjct: 217 NALIAGFCRARDMIRANRAFSDMKERGLAPTKVTYTILIDAFARENDMDKAFEMFAGMEK 276

Query: 496 LG---EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
            G   +   + + V    M       +K  Q++G    K  Q+G   ++ +I G    G 
Sbjct: 277 AGLEVDVRTYGVLVHALCMEGNMKDARKLFQSIG---EKGLQVGNVIYDMLIYGYGREGS 333

Query: 553 LQDAQRVHGLMEAQGF---AASERLKVALISS 581
              A ++   M  +GF   +AS  L + ++ +
Sbjct: 334 SYKAMKLIMEMRKKGFVPNSASYGLTIRILCN 365



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 148/334 (44%), Gaps = 6/334 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++ LI  +      E    + +KM   GI P++ T  +LV  + + G  +RA+  FE + 
Sbjct: 76  FTALIHGYFIHGRREKGLALFEKMRIGGIEPNLYTYNILVGEWCRTGEFERARLLFEEMP 135

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G   +   YN++I       + K    L+++M   GI  S   +  L+  + + G + 
Sbjct: 136 AKGITRNVVSYNTLIAGLCRYRKMKDATQLLELMRREGIRPSVVTFNLLVDGYGKAGKMS 195

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A   +N MR+  +QP+  +   L+  + +A D  +A   F  M   G  P       +I
Sbjct: 196 NALHFSNQMRMAGYQPSAVTYNALIAGFCRARDMIRANRAFSDMKERGLAPTKVTYTILI 255

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            A+ ++N +DKA  +   +EK G E    TY VLV  L     + +A +L   I E G  
Sbjct: 256 DAFARENDMDKAFEMFAGMEKAGLEVDVRTYGVLVHALCMEGNMKDARKLFQSIGEKGLQ 315

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQ 557
               I   L   Y R G   KA++ +  +E +K+   P+   +   I  L   G   +A+
Sbjct: 316 VGNVIYDMLIYGYGREGSSYKAMKLI--MEMRKKGFVPNSASYGLTIRILCNDGKCSEAE 373

Query: 558 RVHGLMEAQGFAASERLKVALISSQTFNRQRQPT 591
            +   M   G   SE ++  L++++   RQ  PT
Sbjct: 374 ALIDDMVRAGVQTSESVRQVLLNAKA--RQGSPT 405



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 65/296 (21%), Positives = 121/296 (40%), Gaps = 35/296 (11%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  Y+ L+    +    E A  + ++M   GI  ++V+   L+    +   +  A +  
Sbjct: 107 NLYTYNILVGEWCRTGEFERARLLFEEMPAKGITRNVVSYNTLIAGLCRYRKMKDATQLL 166

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E +R  G +P    +N ++  Y  AG+    +   + M  +G + S   Y AL+  F + 
Sbjct: 167 ELMRREGIRPSVVTFNLLVDGYGKAGKMSNALHFSNQMRMAGYQPSAVTYNALIAGFCRA 226

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
            D+  A +  + M+     PT  + T+L++A+ +  D D+A   F  M + G + D R  
Sbjct: 227 RDMIRANRAFSDMKERGLAPTKVTYTILIDAFARENDMDKAFEMFAGMEKAGLEVDVRTY 286

Query: 436 ASMIAA-----------------------------------YGKKNLLDKALNLLLELEK 460
             ++ A                                   YG++    KA+ L++E+ K
Sbjct: 287 GVLVHALCMEGNMKDARKLFQSIGEKGLQVGNVIYDMLIYGYGREGSSYKAMKLIMEMRK 346

Query: 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
            GF P  A+Y + +  L      +EAE L+  +   G      ++  L +  AR G
Sbjct: 347 KGFVPNSASYGLTIRILCNDGKCSEAEALIDDMVRAGVQTSESVRQVLLNAKARQG 402



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 121/289 (41%), Gaps = 13/289 (4%)

Query: 147 RHGKIKYKIYGLDLSDPKWTEVAEKIHERGEMILPEEP-KPITGKCKLITDKILSL---E 202
           R G I+  +Y  ++   +W    E   ER  ++  E P K IT         I  L    
Sbjct: 100 RIGGIEPNLYTYNILVGEWCRTGE--FERARLLFEEMPAKGITRNVVSYNTLIAGLCRYR 157

Query: 203 KEEDPSPLLAEWK-ELLQPSRIDWINLLD---RLREQNTQLYFKVAELVLSEESFQTNVR 258
           K +D + LL   + E ++PS + +  L+D   +  + +  L+F      +    +Q +  
Sbjct: 158 KMKDATQLLELMRREGIRPSVVTFNLLVDGYGKAGKMSNALHFSNQ---MRMAGYQPSAV 214

Query: 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318
            Y+ LI    +   +  A R    M E G+ P  VT T+L+  +++  ++D+A E F  +
Sbjct: 215 TYNALIAGFCRARDMIRANRAFSDMKERGLAPTKVTYTILIDAFARENDMDKAFEMFAGM 274

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
              G + D + Y  ++ A    G  K    L   +   G++    IY  L+  + + G  
Sbjct: 275 EKAGLEVDVRTYGVLVHALCMEGNMKDARKLFQSIGEKGLQVGNVIYDMLIYGYGREGSS 334

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
             A ++   MR + F P   S  L +      G   +A +  D M+R G
Sbjct: 335 YKAMKLIMEMRKKGFVPNSASYGLTIRILCNDGKCSEAEALIDDMVRAG 383



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 79/161 (49%), Gaps = 2/161 (1%)

Query: 218 LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L P+++ +  L+D   RE +    F++    + +   + +VR Y  L+ A   E  ++DA
Sbjct: 244 LAPTKVTYTILIDAFARENDMDKAFEMFA-GMEKAGLEVDVRTYGVLVHALCMEGNMKDA 302

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
            ++ + + E G+    V   +L++ Y + G+  +A +    +R  GF P+   Y   I  
Sbjct: 303 RKLFQSIGEKGLQVGNVIYDMLIYGYGREGSSYKAMKLIMEMRKKGFVPNSASYGLTIRI 362

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
             N G+     +L+D M+ +G++ SE +   LL + A+ G 
Sbjct: 363 LCNDGKCSEAEALIDDMVRAGVQTSESVRQVLLNAKARQGS 403


>gi|356523285|ref|XP_003530271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Glycine max]
          Length = 703

 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 93/398 (23%), Positives = 175/398 (43%), Gaps = 19/398 (4%)

Query: 181 PEEPKPITGKCKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQ--NTQ 238
           P EP      C  + D   +L K      +++ + +++    +     L  L E   NT 
Sbjct: 40  PSEPA-----CSTLID---NLRKARQYDAVVSVYHKMVSALVLPRFTSLSALTESFVNTH 91

Query: 239 ---LYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKM--NENGIVPDIV 293
                F V  L +++  F  NV + + ++    +    + A  +  +M  N + +VPD V
Sbjct: 92  HPSFAFSVLSL-MTKRGFGVNVYNLNLVLKGFCRSGQCDKAMSLFSQMKRNYDCVVPDCV 150

Query: 294 TSTVLVHMYSKAGNLDRAKEAFESLRSHG-FQPDKKVYNSMIMAYVNAGQPKLGMSLVDM 352
           T   LV+ + KA  L  A+  FE+++  G  +P+   Y+ +I  Y  +G+   G+ L++ 
Sbjct: 151 TYNTLVNGFCKAKRLAEARVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEE 210

Query: 353 MITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGD 412
           M   G++    +Y +L+ +F   GD+    ++ + M   +  P + + + L++  G+ G 
Sbjct: 211 MEREGLKADVFVYSSLISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGR 270

Query: 413 PDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTV 472
             +A      M   G +PD      +     K      A+ +L  + + G EPG  TY V
Sbjct: 271 WREASEMLKDMTARGVRPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNV 330

Query: 473 LVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKK 532
           +V+ L +   +++A  ++  + + G+ P      +L      AG   +A+     L ++K
Sbjct: 331 VVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEK 390

Query: 533 EQMGPDDF--ERIINGLLAGGFLQDAQRVHGLMEAQGF 568
             + PD F    +I GL   G + DA R+H  M   G 
Sbjct: 391 FHVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGL 428



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 125/304 (41%), Gaps = 2/304 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  YS L+    +     +A  +LK M   G+ PD+V  TVL     K G    A +  
Sbjct: 254 NVVTYSCLMQGLGRTGRWREASEMLKDMTARGVRPDVVAYTVLADGLCKNGRAGDAIKVL 313

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + +   G +P    YN ++       +      +V+MM+  G +     Y  LL+     
Sbjct: 314 DLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGA 373

Query: 376 GDVRGAGQITNIMRIEEFQ--PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           G +  A  +  ++  E+F   P + +C  L++   + G    A      M+ +G + +  
Sbjct: 374 GKIHEAMDLWKLLLSEKFHVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIV 433

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
               +I  Y     L +AL L     + GF P   TY+V+++ L ++Q+++ A  L  K+
Sbjct: 434 TYNFLIEGYLAARKLIEALKLWKYAVESGFSPNSMTYSVMINGLCKMQMLSVARGLFCKM 493

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFL 553
            + G  P      +L     R    ++A      +      +    F  II+G L  G +
Sbjct: 494 KDSGIRPTVIDYNALMTSLCREDSLEQARSLFQEMRNVNHNVDVVSFNIIIDGTLKAGDV 553

Query: 554 QDAQ 557
           + A+
Sbjct: 554 KSAK 557



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 117/283 (41%), Gaps = 11/283 (3%)

Query: 245 ELVLSEE-SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS 303
           +L+LSE+   + +V   + LI    KE  + DA RI   M E G+  +IVT   L+  Y 
Sbjct: 384 KLLLSEKFHVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYL 443

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363
            A  L  A + ++     GF P+   Y+ MI          +   L   M  SGI  +  
Sbjct: 444 AARKLIEALKLWKYAVESGFSPNSMTYSVMINGLCKMQMLSVARGLFCKMKDSGIRPTVI 503

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
            Y AL+ S  +   +  A  +   MR       + S  ++++   +AGD   A+     M
Sbjct: 504 DYNALMTSLCREDSLEQARSLFQEMRNVNHNVDVVSFNIIIDGTLKAGDVKSAKELLSEM 563

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483
             +   PD    + +I  + K  +LD+A+ L  ++   G  PG   +  L+   G   L 
Sbjct: 564 FMMDLVPDAVTFSILINRFSKLGMLDEAMGLYEKMVSCGHVPGVVVFDSLLKGYG---LK 620

Query: 484 NEAEQLLGKISELGEAPPF-------KIQVSLCDMYARAGIEK 519
            E E+++  + ++ +            I   LC M     +EK
Sbjct: 621 GETEKIISLLHQMADKDVVLDSKLTSTILACLCHMSRNLDVEK 663


>gi|224090111|ref|XP_002308939.1| predicted protein [Populus trichocarpa]
 gi|222854915|gb|EEE92462.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 119/259 (45%), Gaps = 5/259 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI+A        +A ++ KKM ENG+ PD+VT  +++  Y       +A   FE ++
Sbjct: 208 YNNLINACGSSGNWREALKLCKKMTENGVGPDLVTHNIILSAYKTGAQYAKALSYFELMK 267

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI--YLALLRSFAQCGD 377
               +PD    N +I      GQ +  + +   M     E   ++  + +++  ++  G 
Sbjct: 268 GTNIRPDTTTLNIIIYCLTKLGQYEKAIGIFKSMREKRAECHPDVVTFTSIIHLYSVNGQ 327

Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
           +     + + M  E  +P + S   L+ AY   G   +A S F+ +   G +PD     S
Sbjct: 328 IENCRAVFSTMVAEGLKPNIVSYNTLMGAYASHGMNKEALSVFNAIKNSGLRPDVVSYTS 387

Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           ++ +YG+     KA  +   +++D  +P   +Y  ++D  G   L+ EA ++L ++ + G
Sbjct: 388 LLNSYGRSQQPKKAREVFEMMKRDKLKPNIVSYNAMIDAYGSNGLLAEAVEVLREMEQDG 447

Query: 498 EAPPFKIQVSLCDMYARAG 516
             P     VS+C + A  G
Sbjct: 448 IYPN---AVSICTLLAACG 463



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 115/260 (44%), Gaps = 37/260 (14%)

Query: 274 EDAERILKKMNENG--IVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYN 331
           E A  I K M E      PD+VT T ++H+YS  G ++  +  F ++ + G +P+   YN
Sbjct: 292 EKAIGIFKSMREKRAECHPDVVTFTSIIHLYSVNGQIENCRAVFSTMVAEGLKPNIVSYN 351

Query: 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391
           +++ AY + G  K  +S+ + +  SG+      Y +LL S+ +    + A ++  +M+ +
Sbjct: 352 TLMGAYASHGMNKEALSVFNAIKNSGLRPDVVSYTSLLNSYGRSQQPKKAREVFEMMKRD 411

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYG----KKNL 447
           + +P + S   +++AYG  G   +A      M + G  P+     +++AA G    K N+
Sbjct: 412 KLKPNIVSYNAMIDAYGSNGLLAEAVEVLREMEQDGIYPNAVSICTLLAACGRCSRKVNI 471

Query: 448 -------------------------------LDKALNLLLELEKDGFEPGPATYTVLVDW 476
                                           +KA ++   + K    P   T+TVL+  
Sbjct: 472 DVVLQAAERRHIKLNTIAYNSAIGSYMNVGEFEKATSMYRSMRKSKVIPDAVTFTVLISG 531

Query: 477 LGRLQLINEAEQLLGKISEL 496
             ++    EA + L ++ +L
Sbjct: 532 CCKMTKYCEALEFLSEMMDL 551



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/381 (19%), Positives = 155/381 (40%), Gaps = 10/381 (2%)

Query: 194 ITDKILSLE-KEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNT-QLYFKVAELVLSEE 251
           +  K+L L+ K +D   LL  W  + + +R ++  L+  + ++ + +    V   + ++ 
Sbjct: 72  VVQKVLELDHKSDDVEGLLNRW--VGRFARKNFPLLIKEITQKGSIEHSILVFRWMKNQR 129

Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311
           ++      Y+ +I  HA+ N  + A  +  +M +    PD  T   L++ + ++G    A
Sbjct: 130 NYCARTDIYNMMIRLHARHNWTDQARGLFFEMQKWRCKPDAETCNALINAHGRSGQWRWA 189

Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
               E +      P +  YN++I A  ++G  +  + L   M  +G+      +  +L +
Sbjct: 190 MNIMEDMLQKAIPPSRSTYNNLINACGSSGNWREALKLCKKMTENGVGPDLVTHNIILSA 249

Query: 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM--IRLGHK 429
           +        A     +M+    +P   +  +++    + G  ++A   F  M   R    
Sbjct: 250 YKTGAQYAKALSYFELMKGTNIRPDTTTLNIIIYCLTKLGQYEKAIGIFKSMREKRAECH 309

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     S+I  Y     ++    +   +  +G +P   +Y  L+       +  EA  +
Sbjct: 310 PDVVTFTSIIHLYSVNGQIENCRAVFSTMVAEGLKPNIVSYNTLMGAYASHGMNKEALSV 369

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGL 547
              I   G  P      SL + Y R+   KKA +    +  K++++ P+   +  +I+  
Sbjct: 370 FNAIKNSGLRPDVVSYTSLLNSYGRSQQPKKAREVFEMM--KRDKLKPNIVSYNAMIDAY 427

Query: 548 LAGGFLQDAQRVHGLMEAQGF 568
            + G L +A  V   ME  G 
Sbjct: 428 GSNGLLAEAVEVLREMEQDGI 448



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 62/295 (21%), Positives = 117/295 (39%), Gaps = 24/295 (8%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           E  + N+  Y+ L+ A+A     ++A  +   +  +G+ PD+V+ T L++ Y ++    +
Sbjct: 341 EGLKPNIVSYNTLMGAYASHGMNKEALSVFNAIKNSGLRPDVVSYTSLLNSYGRSQQPKK 400

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A+E FE ++    +P+   YN+MI AY + G     + ++  M   GI  +      LL 
Sbjct: 401 AREVFEMMKRDKLKPNIVSYNAMIDAYGSNGLLAEAVEVLREMEQDGIYPNAVSICTLLA 460

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
           +  +C        +         +    +    + +Y   G+ ++A S +  M +    P
Sbjct: 461 ACGRCSRKVNIDVVLQAAERRHIKLNTIAYNSAIGSYMNVGEFEKATSMYRSMRKSKVIP 520

Query: 431 DDRCTASMIAAYGKKN-------LLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483
           D      +I+   K          L + ++L + + K+ +  G                I
Sbjct: 521 DAVTFTVLISGCCKMTKYCEALEFLSEMMDLKIPMTKEAYSSGK---------------I 565

Query: 484 NEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
            EAE +  K+   G +P       +   Y  A   KKA   L  +E    Q  PD
Sbjct: 566 TEAESMFNKMKMAGCSPDVVTYTMMLHAYNAAEHWKKACALLQEMEEYNIQ--PD 618



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 57/116 (49%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           + +AE +  KM   G  PD+VT T+++H Y+ A +  +A    + +  +  QPD    ++
Sbjct: 565 ITEAESMFNKMKMAGCSPDVVTYTMMLHAYNAAEHWKKACALLQEMEEYNIQPDTIACSA 624

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIM 388
           ++ A+   G P   + L + M    I  S+ I+  ++ + +   D R   ++  +M
Sbjct: 625 LMRAFNKGGDPSKVLILAEFMREKEIPLSDAIFFEMVSACSLLRDWRTTIELIKLM 680



 Score = 45.4 bits (106), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 90/240 (37%), Gaps = 50/240 (20%)

Query: 210 LLAEWKELLQ--------PSRIDWINLLDRL----REQNTQLYFKVAELVLSEESFQTNV 257
           LLAE  E+L+        P+ +    LL       R+ N  +  + AE        + N 
Sbjct: 432 LLAEAVEVLREMEQDGIYPNAVSICTLLAACGRCSRKVNIDVVLQAAE----RRHIKLNT 487

Query: 258 RDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK------------- 304
             Y+  I ++      E A  + + M ++ ++PD VT TVL+    K             
Sbjct: 488 IAYNSAIGSYMNVGEFEKATSMYRSMRKSKVIPDAVTFTVLISGCCKMTKYCEALEFLSE 547

Query: 305 --------------AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV 350
                         +G +  A+  F  ++  G  PD   Y  M+ AY  A   K   +L+
Sbjct: 548 MMDLKIPMTKEAYSSGKITEAESMFNKMKMAGCSPDVVTYTMMLHAYNAAEHWKKACALL 607

Query: 351 DMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE-------FQPTLESCTLL 403
             M    I+       AL+R+F + GD      +   MR +E       F   + +C+LL
Sbjct: 608 QEMEEYNIQPDTIACSALMRAFNKGGDPSKVLILAEFMREKEIPLSDAIFFEMVSACSLL 667


>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
          Length = 558

 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 118/267 (44%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E+    N+  ++ LIDA  KE    +AE++   M +  I PDI T   L++ +     LD
Sbjct: 247 EKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLD 306

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
           +AK+ FE + S    PD   YN++I  +  + + + G  L   M   G+      Y  L+
Sbjct: 307 KAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 366

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
           +     GD   A ++   M  +   P + + ++L++     G  ++A   FDYM +   K
Sbjct: 367 QGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIK 426

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
            D     +MI    K   +D   +L   L   G +P   TY  ++  L   +L+ EA  L
Sbjct: 427 LDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYAL 486

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAG 516
           L K+ E G  P      +L   + R G
Sbjct: 487 LKKMKEDGPLPDSGTYNTLIRAHLRDG 513



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 75/376 (19%), Positives = 150/376 (39%), Gaps = 10/376 (2%)

Query: 219 QPSRIDWINLLDRLREQNTQLYFKVAELV-----LSEESFQTNVRDYSKLIDAHAKENCL 273
           +P  I +  L+  L   N     K +E V     + +   Q N+  Y  +++   K   +
Sbjct: 111 RPDTITFTTLIHGLFLHN-----KASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDI 165

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           + A  +L KM    I  D+V    ++    K  ++D A   F+ + + G +P+   Y+S+
Sbjct: 166 DLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSL 225

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           I    + G+      L+  MI   I  +   + AL+ +F + G    A ++ + M     
Sbjct: 226 ISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSI 285

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
            P + +   L+  +      D+A+  F++M+     PD     ++I  + K   ++    
Sbjct: 286 DPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTE 345

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
           L  E+   G      TYT L+  L      + A+++  ++   G  P       L D   
Sbjct: 346 LFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLC 405

Query: 514 RAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASER 573
             G  +KAL+   +++  + ++    +  +I G+   G + D   +   +  +G   +  
Sbjct: 406 NNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVV 465

Query: 574 LKVALISSQTFNRQRQ 589
               +IS     R  Q
Sbjct: 466 TYNTMISGLCSKRLLQ 481



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 70/320 (21%), Positives = 135/320 (42%), Gaps = 6/320 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E  ++ +   ++ LI      N   +A  ++ +M + G  P++VT  V+V+   K G+
Sbjct: 105 MVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGD 164

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D A      + +   + D  ++N++I +          ++L   M T GI  +   Y +
Sbjct: 165 IDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSS 224

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+      G    A Q+ + M  ++  P L +   L++A+ + G   +A    D MI+  
Sbjct: 225 LISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRS 284

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLL-LELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
             PD     S+I  +   + LDKA  +    + KD F P   TY  L+    + + + + 
Sbjct: 285 IDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCF-PDLDTYNTLIKGFCKSKRVEDG 343

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERII 544
            +L  ++S  G         +L       G    A +   F +   + + PD   +  ++
Sbjct: 344 TELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKV--FKQMVSDGVPPDIMTYSILL 401

Query: 545 NGLLAGGFLQDAQRVHGLME 564
           +GL   G L+ A  V   M+
Sbjct: 402 DGLCNNGKLEKALEVFDYMQ 421



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 67/326 (20%), Positives = 132/326 (40%), Gaps = 2/326 (0%)

Query: 256 NVRDYSKLIDAHAK--ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           ++ +++KL+ A AK  +  L  +  +L KM + G  P IVT + L++ Y     +  A  
Sbjct: 41  SIFEFNKLLSAIAKMKKFDLVISLALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVA 100

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
             + +   G++PD   + ++I       +    ++LVD M+  G + +   Y  ++    
Sbjct: 101 LVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLC 160

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           + GD+  A  + N M   + +  +     ++++  +    D A + F  M   G +P+  
Sbjct: 161 KRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVV 220

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
             +S+I+          A  LL ++ +    P   T+  L+D   +     EAE+L   +
Sbjct: 221 TYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDM 280

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFL 553
            +    P      SL + +       KA Q   F+ +K      D +  +I G      +
Sbjct: 281 IKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRV 340

Query: 554 QDAQRVHGLMEAQGFAASERLKVALI 579
           +D   +   M  +G          LI
Sbjct: 341 EDGTELFREMSHRGLVGDTVTYTTLI 366



 Score = 47.0 bits (110), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 59/138 (42%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           ++  YS L+D       LE A  +   M ++ I  DI   T ++    KAG +D   + F
Sbjct: 393 DIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLF 452

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
            SL   G +P+   YN+MI    +    +   +L+  M   G       Y  L+R+  + 
Sbjct: 453 CSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRD 512

Query: 376 GDVRGAGQITNIMRIEEF 393
           GD   + ++   MR   F
Sbjct: 513 GDKAASAELIREMRSCRF 530



 Score = 40.0 bits (92), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 40/79 (50%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           LS +  + NV  Y+ +I     +  L++A  +LKKM E+G +PD  T   L+  + + G+
Sbjct: 455 LSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGD 514

Query: 308 LDRAKEAFESLRSHGFQPD 326
              + E    +RS  F  D
Sbjct: 515 KAASAELIREMRSCRFVGD 533


>gi|356519757|ref|XP_003528536.1| PREDICTED: protein Rf1, mitochondrial-like [Glycine max]
          Length = 871

 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 126/273 (46%), Gaps = 1/273 (0%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E+ F  N   Y+ L+D + K N LE A+ + K+M E GI PD V  T L+   SKAGN++
Sbjct: 520 EKGFPINKVAYTVLLDGYFKMNNLEGAQFLWKEMKERGIYPDAVAFTALIDGLSKAGNVE 579

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A E F  + + GF P+   YNS+I    + G+    + L   M   G+      +  ++
Sbjct: 580 EAYEVFLEMSAIGFVPNNFAYNSLIRGLCDCGRVTEALKLEKEMRQKGLLSDTFTFNIII 639

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
             F + G ++ A +    M+     P + +  +L+  Y +A D   A    + M   G  
Sbjct: 640 DGFCRRGQMKFAIETFLDMQRIGLLPDIFTFNILIGGYCKAFDMVGAGEIVNKMYSCGLD 699

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     + +  Y +   +++A+ +L +L   G  P   TY  ++  +    +++ A  L
Sbjct: 700 PDITTYNTYMHGYCRMRKMNQAVIILDQLISAGIVPDTVTYNTMLSGICS-DILDRAMIL 758

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522
             K+ ++G  P       L   + + G+ +KAL
Sbjct: 759 TAKLLKMGFIPNVITTNMLLSHFCKQGMPEKAL 791



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 94/411 (22%), Positives = 174/411 (42%), Gaps = 40/411 (9%)

Query: 187 ITGKCK----LITDKILSLEKEEDPSPLLAEWKELLQPS--------RIDWINLLDRLRE 234
           I G C+    ++ + +L L  +   SP +  +  L+            IDW++L+ R   
Sbjct: 254 ICGFCRQHRVVVGESLLHLMPKFMCSPDVVTFNILINACCIGGRTWVAIDWLHLMVR--- 310

Query: 235 QNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVT 294
                              + +V  ++ ++ A  +E  + +A ++   + + GI P+   
Sbjct: 311 ----------------SGVEPSVATFTTILHALCREGNVVEARKLFDGIQDMGIAPNAAI 354

Query: 295 STVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMI 354
              L+  Y KA  + +A   +E +R+ G  PD   +N ++  +   G+ +    L+  +I
Sbjct: 355 YNTLMDGYFKAREVAQASLLYEEMRTTGVSPDCVTFNILVWGHYKYGRIEDSDRLLKDLI 414

Query: 355 TSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPD 414
            SG+     +Y  ++ S    G +  A ++   +  +    ++ +   L+ AY +AG  D
Sbjct: 415 VSGLFLDSSLYDVMVSSLCWAGRLDEAMKLLQELLEKGLTLSVVAFNSLIGAYSRAGLED 474

Query: 415 QARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
           +A   +  M+R G  P      S++    +K  L +A  LL  + + GF      YTVL+
Sbjct: 475 KAFEAYRIMVRCGFTPSSSTCNSLLMGLCRKGWLQEARILLYRMLEKGFPINKVAYTVLL 534

Query: 475 DWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ 534
           D   ++  +  A+ L  ++ E G  P      +L D  ++AG  ++A +   FLE     
Sbjct: 535 DGYFKMNNLEGAQFLWKEMKERGIYPDAVAFTALIDGLSKAGNVEEAYEV--FLEMSAIG 592

Query: 535 MGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFN 585
             P++F    N L+ G  L D  RV    EA       R K  L  + TFN
Sbjct: 593 FVPNNFAY--NSLIRG--LCDCGRV---TEALKLEKEMRQKGLLSDTFTFN 636



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 141/326 (43%), Gaps = 19/326 (5%)

Query: 240 YFKVAEL----VLSEESFQTNVR----DYSKLIDAHAKENCLEDAERILKKMNENGIVPD 291
           YFK  E+    +L EE   T V      ++ L+  H K   +ED++R+LK +  +G+  D
Sbjct: 362 YFKAREVAQASLLYEEMRTTGVSPDCVTFNILVWGHYKYGRIEDSDRLLKDLIVSGLFLD 421

Query: 292 IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVD 351
                V+V     AG LD A +  + L   G       +NS+I AY  AG          
Sbjct: 422 SSLYDVMVSSLCWAGRLDEAMKLLQELLEKGLTLSVVAFNSLIGAYSRAGLEDKAFEAYR 481

Query: 352 MMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAG 411
           +M+  G   S     +LL    + G ++ A  +   M  + F     + T+L++ Y +  
Sbjct: 482 IMVRCGFTPSSSTCNSLLMGLCRKGWLQEARILLYRMLEKGFPINKVAYTVLLDGYFKMN 541

Query: 412 DPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYT 471
           + + A+  +  M   G  PD     ++I    K   +++A  + LE+   GF P    Y 
Sbjct: 542 NLEGAQFLWKEMKERGIYPDAVAFTALIDGLSKAGNVEEAYEVFLEMSAIGFVPNNFAYN 601

Query: 472 VLVDWLGRLQLINEAEQLLGKISE---LGEAPPFKIQVSLCDMYARAGIEKKALQALGFL 528
            L+  L     + EA +L  ++ +   L +   F I +   D + R G  K A++   FL
Sbjct: 602 SLIRGLCDCGRVTEALKLEKEMRQKGLLSDTFTFNIII---DGFCRRGQMKFAIET--FL 656

Query: 529 EAKKEQMGPDDFERIINGLLAGGFLQ 554
           + ++  + PD F      +L GG+ +
Sbjct: 657 DMQRIGLLPDIFTF---NILIGGYCK 679



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 131/307 (42%), Gaps = 10/307 (3%)

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
           ++ K M   G  P  +T   ++  + +   +   +     +      PD   +N +I A 
Sbjct: 233 KLFKDMIFKGPRPSNLTFNAMICGFCRQHRVVVGESLLHLMPKFMCSPDVVTFNILINAC 292

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
              G+  + +  + +M+ SG+E S   +  +L +  + G+V  A ++ + ++     P  
Sbjct: 293 CIGGRTWVAIDWLHLMVRSGVEPSVATFTTILHALCREGNVVEARKLFDGIQDMGIAPNA 352

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYG--KKNLLDKALNLL 455
                L++ Y +A +  QA   ++ M   G  PD  C    I  +G  K   ++ +  LL
Sbjct: 353 AIYNTLMDGYFKAREVAQASLLYEEMRTTGVSPD--CVTFNILVWGHYKYGRIEDSDRLL 410

Query: 456 LELEKDGFEPGPATYTVLVD---WLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
            +L   G     + Y V+V    W GRL   +EA +LL ++ E G         SL   Y
Sbjct: 411 KDLIVSGLFLDSSLYDVMVSSLCWAGRL---DEAMKLLQELLEKGLTLSVVAFNSLIGAY 467

Query: 513 ARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572
           +RAG+E KA +A   +              ++ GL   G+LQ+A+ +   M  +GF  ++
Sbjct: 468 SRAGLEDKAFEAYRIMVRCGFTPSSSTCNSLLMGLCRKGWLQEARILLYRMLEKGFPINK 527

Query: 573 RLKVALI 579
                L+
Sbjct: 528 VAYTVLL 534



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 108/266 (40%), Gaps = 42/266 (15%)

Query: 214 WKEL----LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHA 268
           WKE+    + P  + +  L+D L +  N +  ++V  L +S   F  N   Y+ LI    
Sbjct: 550 WKEMKERGIYPDAVAFTALIDGLSKAGNVEEAYEVF-LEMSAIGFVPNNFAYNSLIRGLC 608

Query: 269 KENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKK 328
               + +A ++ K+M + G++ D  T  +++  + + G +  A E F  ++  G  PD  
Sbjct: 609 DCGRVTEALKLEKEMRQKGLLSDTFTFNIIIDGFCRRGQMKFAIETFLDMQRIGLLPDIF 668

Query: 329 VYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIM 388
            +N +I  Y  A                                    D+ GAG+I N M
Sbjct: 669 TFNILIGGYCKA-----------------------------------FDMVGAGEIVNKM 693

Query: 389 RIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLL 448
                 P + +    +  Y +    +QA    D +I  G  PD     +M++     ++L
Sbjct: 694 YSCGLDPDITTYNTYMHGYCRMRKMNQAVIILDQLISAGIVPDTVTYNTMLSGIC-SDIL 752

Query: 449 DKALNLLLELEKDGFEPGPATYTVLV 474
           D+A+ L  +L K GF P   T  +L+
Sbjct: 753 DRAMILTAKLLKMGFIPNVITTNMLL 778



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 75/170 (44%), Gaps = 8/170 (4%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L  ++F  N+     +ID   +   ++ A      M   G++PDI T  +L+  Y KA +
Sbjct: 628 LLSDTFTFNI-----IIDGFCRRGQMKFAIETFLDMQRIGLLPDIFTFNILIGGYCKAFD 682

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A E    + S G  PD   YN+ +  Y    +    + ++D +I++GI      Y  
Sbjct: 683 MVGAGEIVNKMYSCGLDPDITTYNTYMHGYCRMRKMNQAVIILDQLISAGIVPDTVTYNT 742

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEE-FQPTLESCTLLVEAYGQAGDPDQA 416
           +L     C D+     I     ++  F P + +  +L+  + + G P++A
Sbjct: 743 MLSGI--CSDILDRAMILTAKLLKMGFIPNVITTNMLLSHFCKQGMPEKA 790



 Score = 47.4 bits (111), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 59/266 (22%), Positives = 111/266 (41%), Gaps = 5/266 (1%)

Query: 319 RSHG-FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
           R+H  ++ D  V N+++  ++N G     + ++ MM   G+         LLR   + GD
Sbjct: 168 RNHAMYESDFSVLNTLLRGFLNVGMGFEALEVLRMMRGVGVRPGLSSITILLRLLLRIGD 227

Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
                ++   M  +  +P+  +   ++  + +        S    M +    PD      
Sbjct: 228 YGSVWKLFKDMIFKGPRPSNLTFNAMICGFCRQHRVVVGESLLHLMPKFMCSPDVVTFNI 287

Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           +I A         A++ L  + + G EP  AT+T ++  L R   + EA +L   I ++G
Sbjct: 288 LINACCIGGRTWVAIDWLHLMVRSGVEPSVATFTTILHALCREGNVVEARKLFDGIQDMG 347

Query: 498 EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQD 555
            AP   I  +L D Y +A   + A  +L + E +   + PD   F  ++ G    G ++D
Sbjct: 348 IAPNAAIYNTLMDGYFKA--REVAQASLLYEEMRTTGVSPDCVTFNILVWGHYKYGRIED 405

Query: 556 AQRVHGLMEAQGFAASERLKVALISS 581
           + R+   +   G      L   ++SS
Sbjct: 406 SDRLLKDLIVSGLFLDSSLYDVMVSS 431


>gi|162462150|ref|NP_001105879.1| chloroplast RNA processing1 [Zea mays]
 gi|3289002|gb|AAC25599.1| CRP1 [Zea mays]
          Length = 668

 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 97/413 (23%), Positives = 174/413 (42%), Gaps = 28/413 (6%)

Query: 197 KILSLEKEEDPSPLLAEWKELLQ--------PSRIDWINLLDRLREQNTQ---------- 238
           ++LSL +E D  P LA +  LL         P       LL  LRE   +          
Sbjct: 176 RLLSLLREHDFLPDLASYSHLLASLLNTRDPPDAALLERLLGDLRESRLEPDAPLFSDLI 235

Query: 239 -LYFKVA------ELVLSEESFQTNVRD--YSKLIDAHAKENCLEDAERILKKMNENG-I 288
             + + A      EL+ S ++     R    + LI A      + +AE +  +    G I
Sbjct: 236 SAFARAALPDAALELLASAQAIGLTPRSNAVTALISALGTAGRVAEAEALFLEFFLAGEI 295

Query: 289 VPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMS 348
            P       L+  Y + G+L  A++  + +   G  PD+  Y+ ++ AY  AG+ +    
Sbjct: 296 KPRTRAYNALLKGYVRIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARI 355

Query: 349 LVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYG 408
           L+  M   G++ S  ++  +L  F   GD + A  +   M+    +P      ++++ +G
Sbjct: 356 LLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFG 415

Query: 409 QAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPA 468
           +      A   F+ M   G +PD     ++I A+ K    D+A  L  E+ +    PG  
Sbjct: 416 KYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFEEMRESNCPPGTT 475

Query: 469 TYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFL 528
           TY ++++ LG  +     E +L ++ E G  P      +L D+Y R+G  K+A+  +  +
Sbjct: 476 TYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAM 535

Query: 529 EAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
           +A   +  P  +  ++N     G    A  V   M+A G   S  +  +LI++
Sbjct: 536 KADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMKADGLEVSILVLNSLINA 588



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 110/249 (44%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +ID   K NCL  A     KM E GI PD+VT   L+  + K G  DRA E FE +R
Sbjct: 407 YNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFEEMR 466

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
                P    YN MI         +   +++  M   G+  +   Y  L+  + + G  +
Sbjct: 467 ESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYK 526

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A      M+ +  +P+      LV AY Q G  D A +    M   G +       S+I
Sbjct: 527 EAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMKADGLEVSILVLNSLI 586

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            A+G+   + +A ++L  + ++G  P   TYT L+  L R++  ++   +  ++   G A
Sbjct: 587 NAFGEDRRVVEAFSVLQFMRENGLRPDVITYTTLMKALIRVEQFDKVPVIYEEMITSGCA 646

Query: 500 PPFKIQVSL 508
           P  K +  L
Sbjct: 647 PDRKARAML 655



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/330 (20%), Positives = 147/330 (44%), Gaps = 40/330 (12%)

Query: 245 ELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK 304
           E  L+ E  +   R Y+ L+  + +   L++AE++L +M++ G+ PD  T ++LV  Y++
Sbjct: 288 EFFLAGE-IKPRTRAYNALLKGYVRIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTR 346

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
           AG  + A+   + + + G +P   V++ ++  + + G  +   +++  M  SG+      
Sbjct: 347 AGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHF 406

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA-------- 416
           Y  ++ +F +   +  A    N MR E  +P + +   L++A+ + G  D+A        
Sbjct: 407 YNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFEEMR 466

Query: 417 -------RSNFDYMIRL--------------------GHKPDDRCTASMIAAYGKKNLLD 449
                   + ++ MI L                    G  P+     +++  YG+     
Sbjct: 467 ESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYK 526

Query: 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLC 509
           +A++ +  ++ DG +P P  Y  LV+   +  L + A  ++  +   G      +  SL 
Sbjct: 527 EAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMKADGLEVSILVLNSLI 586

Query: 510 DMYARAGIEKKALQALGFLEAKKEQ-MGPD 538
           + +   G +++ ++A   L+  +E  + PD
Sbjct: 587 NAF---GEDRRVVEAFSVLQFMRENGLRPD 613



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 110/226 (48%), Gaps = 4/226 (1%)

Query: 215 KELLQPSRIDWINLLDRLREQNTQLYFKVAELV--LSEESFQTNVRDYSKLIDAHAKENC 272
           +E ++P  + W  L+D         + + AEL   + E +       Y+ +I+   ++  
Sbjct: 432 EEGIEPDVVTWNTLIDA--HCKGGRHDRAAELFEEMRESNCPPGTTTYNIMINLLGEQEH 489

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
            E  E +L +M E G+VP+I+T T LV +Y ++G    A +  E++++ G +P   +Y++
Sbjct: 490 WEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHA 549

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           ++ AY   G     +++V  M   G+E S  +  +L+ +F +   V  A  +   MR   
Sbjct: 550 LVNAYAQRGLADHALNVVKAMKADGLEVSILVLNSLINAFGEDRRVVEAFSVLQFMRENG 609

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
            +P + + T L++A  +    D+    ++ MI  G  PD +  A +
Sbjct: 610 LRPDVITYTTLMKALIRVEQFDKVPVIYEEMITSGCAPDRKARAML 655


>gi|302765581|ref|XP_002966211.1| hypothetical protein SELMODRAFT_85415 [Selaginella moellendorffii]
 gi|300165631|gb|EFJ32238.1| hypothetical protein SELMODRAFT_85415 [Selaginella moellendorffii]
          Length = 969

 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 144/308 (46%), Gaps = 21/308 (6%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++ L++A +  N L D  +I   + E+ +  DIV  T L+ MY+  G+L+ A+E F+++ 
Sbjct: 621 FTSLLNACSDPNRLVDGRQIHSWIAESRLENDIVMVTGLITMYANCGSLNNAREIFDNIF 680

Query: 320 SHGFQPDKKVY--NSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
           S+  Q  + ++   SMI AY   G+ +  + L + M +  +E     ++++L + A   D
Sbjct: 681 SNSRQHHRDLFLWTSMITAYEQHGEYRKALELYEQMHSRQVEADRVTFISVLNACAHLSD 740

Query: 378 VR-GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
           +R G      +MR       +     +V  YG+ G  D+A   F+   +  HK     TA
Sbjct: 741 LRQGQAIHARVMR-RGLATDVAVANSIVFMYGKCGSFDEASIVFE---KTKHKDISLWTA 796

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
            +IA+Y +    ++AL +   L +DG E    T+  ++     + LI E  +    ++EL
Sbjct: 797 -LIASYARHGHGEQALWIFRRLRQDGIELSNLTFVAMLSACSHVGLIEEGCEFFASMAEL 855

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDA 556
           G  P  +    L D+ ARAG    A + L  +      +       ++  LLA      A
Sbjct: 856 GIEPNMEHHSCLVDLLARAGHLHTAEEFLSRMPVAANTI-------VLTALLA------A 902

Query: 557 QRVHGLME 564
            RVHG +E
Sbjct: 903 CRVHGDVE 910



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 67/332 (20%), Positives = 129/332 (38%), Gaps = 41/332 (12%)

Query: 285 ENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSH----------------------- 321
           E+G+  D+V  + LV+MY+K G +  A++ F+ + +                        
Sbjct: 446 ESGLEGDLVGIS-LVNMYAKCGTVGEARKVFDRINNRSRILWNSMITAYQEKDPHEALHL 504

Query: 322 -------GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
                  G  PD+  + +++ A VNA   + G ++   ++ SG      +  AL   +A+
Sbjct: 505 FREMQPEGVSPDRITFMTVLNACVNAADLENGRTIHTRIVDSGFAADVRVATALFNMYAK 564

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
           CG +  A  + + M   +    + S   ++ AY Q  D + A S    M   G +PD   
Sbjct: 565 CGSLGEARGVFDSMVFRD----VVSWNNMIAAYVQGRDGEGAISLCWAMQLEGMRPDKAT 620

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI- 493
             S++ A    N L     +   + +   E      T L+        +N A ++   I 
Sbjct: 621 FTSLLNACSDPNRLVDGRQIHSWIAESRLENDIVMVTGLITMYANCGSLNNAREIFDNIF 680

Query: 494 -SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
            +         +  S+   Y + G  +KAL+    + +++ +     F  ++N       
Sbjct: 681 SNSRQHHRDLFLWTSMITAYEQHGEYRKALELYEQMHSRQVEADRVTFISVLNACAHLSD 740

Query: 553 LQDAQRVHGLMEAQGFAASERLKVALISSQTF 584
           L+  Q +H  +  +G A      VA+ +S  F
Sbjct: 741 LRQGQAIHARVMRRGLAT----DVAVANSIVF 768



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 73/369 (19%), Positives = 151/369 (40%), Gaps = 27/369 (7%)

Query: 220 PSRIDWINLLD-----RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           P+ + ++++L       L EQ  Q++  V E  L E      V + +  I+ + K  CL+
Sbjct: 211 PNSVTFVSILSGCEAPSLLEQGRQIHALVVESSL-ESHLDIGVLNLT--INMYVKCGCLD 267

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
            A +   +M       D+V+ TV++  YS+ G    + + F  +   G  P+   + S++
Sbjct: 268 GAVQTFARMKRR----DVVSWTVMIGAYSQDGKFSLSLQLFREMLLEGTAPNSVTFVSIL 323

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
                    + G  +  +++ S +E    +  +LL  +++C     +  + + M + +  
Sbjct: 324 SGCEAPSLLEQGRQIHALVVESSLESHVVVANSLLGMYSRCRSWEDSRSLFDRMSVRD-- 381

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
            ++   T+++    +      A   +  M+  G  P     + ++ A G    L     +
Sbjct: 382 -SVSWSTIIMACSREDSHCRDALPLYRSMLHEGVMPKTLALSMVLEACGSLAELKGGKLV 440

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
              + + G E G      LV+   +   + EA ++  +I+             L +    
Sbjct: 441 HAHVIESGLE-GDLVGISLVNMYAKCGTVGEARKVFDRINNRSRI--------LWNSMIT 491

Query: 515 AGIEKKALQALG-FLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAAS 571
           A  EK   +AL  F E + E + PD   F  ++N  +    L++ + +H  +   GFAA 
Sbjct: 492 AYQEKDPHEALHLFREMQPEGVSPDRITFMTVLNACVNAADLENGRTIHTRIVDSGFAAD 551

Query: 572 ERLKVALIS 580
            R+  AL +
Sbjct: 552 VRVATALFN 560



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 60/269 (22%), Positives = 109/269 (40%), Gaps = 15/269 (5%)

Query: 263 LIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG 322
           L+ A  K   LE+ + I  ++    +  DI    + ++MY K G LD A + F  ++   
Sbjct: 16  LLTACTKLGALEEGKLIQDRLAGTQLELDIGVRNLTINMYVKCGCLDGAVQTFARMK--- 72

Query: 323 FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAG 382
            + D   +  MI AY   G+  L + L   M+  G   +   ++++L S  +   +   G
Sbjct: 73  -RRDVVSWTVMIGAYSQDGKFSLSLQLFREMLLEGTAPNSVTFVSIL-SGCEAPSLLEQG 130

Query: 383 QITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS---MI 439
           +  + + +E    +LES   +V A    G   + RS  D  ++   +   R   S   MI
Sbjct: 131 RQIHALVVES---SLES--HVVVANSLLGMYSRCRSWEDSRMQTFARMKRRDVVSWTVMI 185

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            AY +      ++ L  E+  +G  P   T+  ++       L+ +  Q+   + E    
Sbjct: 186 GAYSQDGKFSLSIQLFREMLLEGTAPNSVTFVSILSGCEAPSLLEQGRQIHALVVESSLE 245

Query: 500 PPFKIQV--SLCDMYARAGIEKKALQALG 526
               I V     +MY + G    A+Q   
Sbjct: 246 SHLDIGVLNLTINMYVKCGCLDGAVQTFA 274



 Score = 40.8 bits (94), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 56/308 (18%), Positives = 127/308 (41%), Gaps = 25/308 (8%)

Query: 264 IDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGF 323
           I+ + K  CL+ A +   +M       D+V+ TV++  YS+ G    + + F  +   G 
Sbjct: 52  INMYVKCGCLDGAVQTFARMKRR----DVVSWTVMIGAYSQDGKFSLSLQLFREMLLEGT 107

Query: 324 QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQ 383
            P+   + S++         + G  +  +++ S +E    +  +LL  +++C     +  
Sbjct: 108 APNSVTFVSILSGCEAPSLLEQGRQIHALVVESSLESHVVVANSLLGMYSRCRSWEDS-- 165

Query: 384 ITNIMRIEEF----QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
                R++ F    +  + S T+++ AY Q G    +   F  M+  G  P+     S++
Sbjct: 166 -----RMQTFARMKRRDVVSWTVMIGAYSQDGKFSLSIQLFREMLLEGTAPNSVTFVSIL 220

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPG--PATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           +     +LL++   +   + +   E         + ++   +   ++ A Q   ++    
Sbjct: 221 SGCEAPSLLEQGRQIHALVVESSLESHLDIGVLNLTINMYVKCGCLDGAVQTFARMKR-R 279

Query: 498 EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQD 555
           +   + + +     Y++ G    +LQ   F E   E   P+   F  I++G  A   L+ 
Sbjct: 280 DVVSWTVMIG---AYSQDGKFSLSLQL--FREMLLEGTAPNSVTFVSILSGCEAPSLLEQ 334

Query: 556 AQRVHGLM 563
            +++H L+
Sbjct: 335 GRQIHALV 342


>gi|225464410|ref|XP_002269194.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic [Vitis vinifera]
          Length = 929

 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 113/222 (50%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
            V  ++ LI    ++  +E A  IL +M+  GI P+  T T ++H Y+  G+  +A E F
Sbjct: 603 TVHTFNALILGLVEKCQMEKAVEILDEMSLAGISPNEHTYTTIMHGYASLGDTGKAFEYF 662

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             L++ G + D   Y +++ A   +G+ +  +++   M +  I R+  +Y  L+  +A+ 
Sbjct: 663 TKLKTEGLELDVYTYEALLKACCKSGRMQSALAVTREMSSQKIPRNTFVYNILIDGWARR 722

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           GDV  A ++   M+ E  QP + + T  + A  +AGD  +A      M  +G KP+ +  
Sbjct: 723 GDVWEAAELMQQMKQEGVQPDIHTYTSFINACCKAGDMQRATKTIQEMEVVGVKPNIKTY 782

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
            ++I  + + +L +KAL    E++  G +P  A Y  L+  L
Sbjct: 783 TTLIHGWARASLPEKALKCFQEMKSAGLKPDKAVYHCLMTSL 824



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/375 (19%), Positives = 157/375 (41%), Gaps = 22/375 (5%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAEL--------VLSEESFQTNVRDYSKLIDAHAK 269
             PS I +  L++        LY K+ ++        ++     + N++ YS LI+   +
Sbjct: 460 FTPSVISYGCLIN--------LYIKIGKVSKALEVSKMMEVAGIKHNMKTYSMLINGFVR 511

Query: 270 ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKV 329
                +A  + + + ++G+ PD+V    ++  +   GN+DRA    + ++    +P  + 
Sbjct: 512 LKDWANAFAVFEDVVKDGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRT 571

Query: 330 YNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389
           +  +I  +  +G  +  + + DMM  SG   +   + AL+    +   +  A +I + M 
Sbjct: 572 FMPIIHGFARSGDMRRALEIFDMMRWSGCIPTVHTFNALILGLVEKCQMEKAVEILDEMS 631

Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL---GHKPDDRCTASMIAAYGKKN 446
           +    P   + T ++  Y   GD  +A   F+Y  +L   G + D     +++ A  K  
Sbjct: 632 LAGISPNEHTYTTIMHGYASLGDTGKA---FEYFTKLKTEGLELDVYTYEALLKACCKSG 688

Query: 447 LLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQV 506
            +  AL +  E+           Y +L+D   R   + EA +L+ ++ + G  P      
Sbjct: 689 RMQSALAVTREMSSQKIPRNTFVYNILIDGWARRGDVWEAAELMQQMKQEGVQPDIHTYT 748

Query: 507 SLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQ 566
           S  +   +AG  ++A + +  +E    +     +  +I+G       + A +    M++ 
Sbjct: 749 SFINACCKAGDMQRATKTIQEMEVVGVKPNIKTYTTLIHGWARASLPEKALKCFQEMKSA 808

Query: 567 GFAASERLKVALISS 581
           G    + +   L++S
Sbjct: 809 GLKPDKAVYHCLMTS 823



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/311 (21%), Positives = 133/311 (42%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N   Y  +I AH +   +  AE ++++M E GI   I     ++  Y+  GN ++    F
Sbjct: 393 NAIIYGNIIYAHCQACNMTQAEALVREMEEEGIDAPIDIYHTMMDGYTIIGNEEKCLIVF 452

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + L+  GF P    Y  +I  Y+  G+    + +  MM  +GI+ + + Y  L+  F + 
Sbjct: 453 DRLKECGFTPSVISYGCLINLYIKIGKVSKALEVSKMMEVAGIKHNMKTYSMLINGFVRL 512

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
            D   A  +   +  +  +P +     ++ A+   G+ D+A      M +  H+P  R  
Sbjct: 513 KDWANAFAVFEDVVKDGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTF 572

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +I  + +   + +AL +   +   G  P   T+  L+  L     + +A ++L ++S 
Sbjct: 573 MPIIHGFARSGDMRRALEIFDMMRWSGCIPTVHTFNALILGLVEKCQMEKAVEILDEMSL 632

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
            G +P      ++   YA  G   KA +    L+ +  ++    +E ++      G +Q 
Sbjct: 633 AGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLKTEGLELDVYTYEALLKACCKSGRMQS 692

Query: 556 AQRVHGLMEAQ 566
           A  V   M +Q
Sbjct: 693 ALAVTREMSSQ 703



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 66/338 (19%), Positives = 144/338 (42%), Gaps = 8/338 (2%)

Query: 248 LSEESFQTNVRDYSKLIDAHA----KENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS 303
           + EE     +  Y  ++D +     +E CL     +  ++ E G  P +++   L+++Y 
Sbjct: 420 MEEEGIDAPIDIYHTMMDGYTIIGNEEKCL----IVFDRLKECGFTPSVISYGCLINLYI 475

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363
           K G + +A E  + +   G + + K Y+ +I  +V         ++ + ++  G++    
Sbjct: 476 KIGKVSKALEVSKMMEVAGIKHNMKTYSMLINGFVRLKDWANAFAVFEDVVKDGLKPDVV 535

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
           +Y  ++R+F   G++  A +    M+ E  +PT  +   ++  + ++GD  +A   FD M
Sbjct: 536 LYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIHGFARSGDMRRALEIFDMM 595

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483
              G  P      ++I    +K  ++KA+ +L E+   G  P   TYT ++     L   
Sbjct: 596 RWSGCIPTVHTFNALILGLVEKCQMEKAVEILDEMSLAGISPNEHTYTTIMHGYASLGDT 655

Query: 484 NEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERI 543
            +A +   K+   G         +L     ++G  + AL     + ++K       +  +
Sbjct: 656 GKAFEYFTKLKTEGLELDVYTYEALLKACCKSGRMQSALAVTREMSSQKIPRNTFVYNIL 715

Query: 544 INGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
           I+G    G + +A  +   M+ +G         + I++
Sbjct: 716 IDGWARRGDVWEAAELMQQMKQEGVQPDIHTYTSFINA 753



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/318 (20%), Positives = 125/318 (39%), Gaps = 35/318 (11%)

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           ++V  Y++ G++  A+  FES+R+ G +P   VY S+I AY      +  +S V  M   
Sbjct: 294 LMVTYYARRGDMHHARGTFESMRARGIEPTSHVYTSLIHAYAVGRDMEEALSCVRKMKEE 353

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQ-----------ITNIMRIEEFQPTLESCTL--- 402
           GIE S   Y  L+  FA+  D   A             +  I+         ++C +   
Sbjct: 354 GIEMSLVTYSILVGGFAKIADAEAADHWFKEAKERHTTLNAIIYGNIIYAHCQACNMTQA 413

Query: 403 ---------------------LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441
                                +++ Y   G+ ++    FD +   G  P       +I  
Sbjct: 414 EALVREMEEEGIDAPIDIYHTMMDGYTIIGNEEKCLIVFDRLKECGFTPSVISYGCLINL 473

Query: 442 YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
           Y K   + KAL +   +E  G +    TY++L++   RL+    A  +   + + G  P 
Sbjct: 474 YIKIGKVSKALEVSKMMEVAGIKHNMKTYSMLINGFVRLKDWANAFAVFEDVVKDGLKPD 533

Query: 502 FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHG 561
             +  ++   +   G   +A++ +  ++ ++ +     F  II+G    G ++ A  +  
Sbjct: 534 VVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIHGFARSGDMRRALEIFD 593

Query: 562 LMEAQGFAASERLKVALI 579
           +M   G   +     ALI
Sbjct: 594 MMRWSGCIPTVHTFNALI 611



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 74/137 (54%), Gaps = 15/137 (10%)

Query: 241 FKVAELV--LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVL 298
           ++ AEL+  + +E  Q ++  Y+  I+A  K   ++ A + +++M   G+ P+I T T L
Sbjct: 726 WEAAELMQQMKQEGVQPDIHTYTSFINACCKAGDMQRATKTIQEMEVVGVKPNIKTYTTL 785

Query: 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
           +H +++A   ++A + F+ ++S G +PDK VY+ ++ + ++        S+ +  I SG+
Sbjct: 786 IHGWARASLPEKALKCFQEMKSAGLKPDKAVYHCLMTSLLSRA------SVAEEYIYSGV 839

Query: 359 ERSEEIYLALLRSFAQC 375
                  + + R   +C
Sbjct: 840 -------VGICREMIEC 849


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 136/314 (43%), Gaps = 19/314 (6%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           +  L+D + K   +E+A  I  KM E     D+V+ T ++H Y K G  +     F  L 
Sbjct: 289 WCSLLDMYGKCGSIEEARYIFDKMEER----DVVSWTTMIHTYLKNGRREEGFALFRHLM 344

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           +    P+   +  ++ A  +     LG  +   M+  G +       AL+  +++CGD+ 
Sbjct: 345 NSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVGFDSFSSAASALVHMYSKCGDIE 404

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  +  I+     QP L S T L+  Y Q G  D+A   F+ +++ G KPD      ++
Sbjct: 405 NAKSVFEILP----QPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAFIGVL 460

Query: 440 AAYGKKNLLDKALNLLLEL-EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           +A     L+DK L     + EK G       Y  ++D L R     EAE +   I+E+  
Sbjct: 461 SACAHAGLVDKGLEYFHSIKEKHGLTRTIDHYACIIDLLARAGQFTEAESI---INEMPI 517

Query: 499 APPFKIQVSL---CDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
            P   I  +L   C ++    + K+A ++L  +E +     P  +  + N   + G   +
Sbjct: 518 KPDKYIWAALLGGCRIHGNLELAKRAAKSLFEIEPEN----PATYVTLANIYASAGMRAE 573

Query: 556 AQRVHGLMEAQGFA 569
              +   M+++G  
Sbjct: 574 EANIRETMDSRGIV 587



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/263 (21%), Positives = 111/263 (42%), Gaps = 25/263 (9%)

Query: 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320
           ++L+D +AK   L DAE++  +M    +  D+ +  +++  Y K GN ++A+  F+ + +
Sbjct: 157 NRLLDMYAKCGSLVDAEKVFDEM----VHRDLCSWNIMISGYVKGGNFEKARNLFDKMPN 212

Query: 321 HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL-------ALLRSFA 373
                D   + ++I   V   +P+  + L  +M      +S +  +       A + S  
Sbjct: 213 R----DNFSWTAIISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAASAAIPSLH 268

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
               + G     +IMR+      +  C+LL + YG+ G  ++AR  FD M     + D  
Sbjct: 269 MGKKIHG-----HIMRMGLDSDEVVWCSLL-DMYGKCGSIEEARYIFDKM----EERDVV 318

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
              +MI  Y K    ++   L   L      P   T+  +++    L   +  +Q+   +
Sbjct: 319 SWTTMIHTYLKNGRREEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYM 378

Query: 494 SELGEAPPFKIQVSLCDMYARAG 516
             +G         +L  MY++ G
Sbjct: 379 VRVGFDSFSSAASALVHMYSKCG 401


>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Vitis vinifera]
          Length = 778

 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 113/239 (47%)

Query: 268 AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK 327
            +E  LE+A ++L    + G   D V+   L+  Y K GN+DRA + ++ ++     P  
Sbjct: 464 CREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPST 523

Query: 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNI 387
             YN +I      G+ +  +S ++ ++ SG+   E  Y  +L  + + GDV  A Q  N 
Sbjct: 524 VTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNK 583

Query: 388 MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447
           M    F+P + +C +L+      G  ++A   F+  +  G   D     ++I +  K+  
Sbjct: 584 MVENSFKPDVFTCNILLRGLCMEGVLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGR 643

Query: 448 LDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQV 506
           LD A NLL E+E+    P   TY  ++  L     I EAE+ + K+ E G  P   +Q+
Sbjct: 644 LDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGNLPDQVLQL 702



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/302 (22%), Positives = 126/302 (41%), Gaps = 5/302 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  ++ +I  +  EN  +DA   L  M +    PD VT   ++    K G L  A++  
Sbjct: 207 NVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDTLCKKGRLGDARDLL 266

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             ++S G  P++  YN ++  Y   G  K   +++++M  + +      Y  L+      
Sbjct: 267 MDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNE 326

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A ++ + M   +  P + S   L+    +     +A    + M   G KP+    
Sbjct: 327 GRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTH 386

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             M+  Y K+  +D A N + ++E+ GF P   TY  L++   +   + EA      + E
Sbjct: 387 NIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEA---FRTMDE 443

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
           +G        V+L  +      EKK  +A   L + +++    D   +  G L  G+ +D
Sbjct: 444 MGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFID--EVSYGTLIVGYFKD 501

Query: 556 AQ 557
             
Sbjct: 502 GN 503



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/286 (20%), Positives = 121/286 (42%)

Query: 287 GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLG 346
           GIVP++ T  ++++ Y        A E    +  +   PD   YN+++      G+    
Sbjct: 203 GIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDTLCKKGRLGDA 262

Query: 347 MSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA 406
             L+  M + G+  +   Y  L+  + + G ++ A  +  +M      P + +  +L+  
Sbjct: 263 RDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLING 322

Query: 407 YGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG 466
               G  ++A    D M  L   PD     ++I    + + + +A  LL E+ + G +P 
Sbjct: 323 LCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPN 382

Query: 467 PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALG 526
             T+ ++V W  +   +++A   + K+ E G +P      +L + Y +AG   +A + + 
Sbjct: 383 AVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMD 442

Query: 527 FLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572
            +  K  +M       I+  L     L++A ++      +G+   E
Sbjct: 443 EMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDE 488



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 73/342 (21%), Positives = 149/342 (43%), Gaps = 14/342 (4%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++++ +   +V  Y+ LI+    E  +E+A ++  +M    ++PD+V+   L++   +  
Sbjct: 303 LMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWS 362

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            +  A +  E +   G +P+   +N M+  Y   G+     + +  M  SG       Y 
Sbjct: 363 KISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYN 422

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL--LVEAYGQAGDPDQARSNFDYMI 424
            L+  + + G++  A +  + M  +  +  ++S TL  ++    +    ++A        
Sbjct: 423 TLINGYCKAGNMGEAFRTMDEMGRKNMK--MDSVTLNTILRTLCREKKLEEAYKLLSSAR 480

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
           + G+  D+    ++I  Y K   +D+AL L  E+++    P   TY  ++   G L    
Sbjct: 481 KRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCII---GGLCQCG 537

Query: 485 EAEQLLGKISELGEA---PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF- 540
           + EQ + K++EL E+   P      ++   Y R G  +KA Q     +  +    PD F 
Sbjct: 538 KTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHN--KMVENSFKPDVFT 595

Query: 541 -ERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
              ++ GL   G L+ A ++     ++G A        LI+S
Sbjct: 596 CNILLRGLCMEGVLEKALKLFNTWVSKGKAIDTVTYNTLITS 637



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 64/301 (21%), Positives = 121/301 (40%), Gaps = 7/301 (2%)

Query: 264 IDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM---YSKAGNLDRAKEAFESLRS 320
           I A+ +      A +I KKM    + P+++T   L++    Y  + ++  ++EAF     
Sbjct: 142 IGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSFSREAFNDAIK 201

Query: 321 HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRG 380
            G  P+   +N +I  Y    + K  +  +++M           Y  +L +  + G +  
Sbjct: 202 LGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDTLCKKGRLGD 261

Query: 381 AGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIA 440
           A  +   M+     P   +  +LV  Y + G   +A +  + M +    PD      +I 
Sbjct: 262 ARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLIN 321

Query: 441 AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
               +  +++A  L  E+E     P   +Y  L++       I+EA +LL ++SE G  P
Sbjct: 322 GLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKP 381

Query: 501 PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQR 558
                  +   Y + G    A   +  +E  +    PD   +  +ING    G + +A R
Sbjct: 382 NAVTHNIMVKWYCKEGKMDDASNTITKME--ESGFSPDCVTYNTLINGYCKAGNMGEAFR 439

Query: 559 V 559
            
Sbjct: 440 T 440



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 92/246 (37%), Gaps = 42/246 (17%)

Query: 324 QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQ 383
            P K + ++ I AYV +GQP                                     A Q
Sbjct: 132 SPSKALLDTAIGAYVQSGQP-----------------------------------HHAFQ 156

Query: 384 ITNIMRIEEFQPTLESCTLLVEA---YGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIA 440
           I   M+    +P L +C  L+ +   Y  +     +R  F+  I+LG  P+      +I 
Sbjct: 157 IFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSFSREAFNDAIKLGIVPNVNTFNIVIY 216

Query: 441 AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
            Y  +N    A+  L  + K    P   TY  ++D L +   + +A  LL  +   G  P
Sbjct: 217 GYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDTLCKKGRLGDARDLLMDMKSRGLLP 276

Query: 501 PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQR 558
                  L   Y + G  K+A   +  +   +  + PD   +  +INGL   G +++A +
Sbjct: 277 NRNTYNILVYGYCKMGWLKEAANVIELM--TQNNLLPDVWTYNMLINGLCNEGRIEEAFK 334

Query: 559 VHGLME 564
           +   ME
Sbjct: 335 LRDEME 340


>gi|300681579|emb|CBI75523.1| PPR repeat domain containing protein [Triticum aestivum]
          Length = 728

 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 122/275 (44%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +   +F  +  +YS LI A+ +   L++A  + + M  +GI P++VT T+LVH +S  G 
Sbjct: 414 MVHHNFVPDAYNYSSLIYAYCRHRQLKEALEVFELMVSDGICPNVVTCTILVHGFSNEGL 473

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A    + +R  G  P    Y  +I       +P     +   MI  G      +Y  
Sbjct: 474 IGEAFLFLDKVRQFGVVPSLCTYRVIIHGLCKVNKPNDMWGIFADMIKRGYVPDTVLYSI 533

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++  F +  D++ A ++   M  E  +P + + T L+          +  + F +MI  G
Sbjct: 534 IIDGFVKALDLQEAFRLYYKMVDEGTKPNIFTYTSLINGLCHDDKLPEVMTLFKHMIGEG 593

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD     S+IA Y K++ +  AL +  E+E +G       YT L+    ++  ++ A+
Sbjct: 594 LAPDRILYTSLIACYCKRSNMKAALEIFREMETEGLSADSFVYTCLIGGFSKVLAMDGAQ 653

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522
             + ++   G  P       L   Y + G EKKA+
Sbjct: 654 LFMEEMMNKGLTPTVVTYTDLIVGYFKIGDEKKAM 688



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 140/335 (41%), Gaps = 40/335 (11%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F  +V  YS L+D   K+  +     +L +M  NGI P++V+ + L+H   +AG ++ A 
Sbjct: 314 FVPDVHSYSILVDGLCKQGDVLTGYYMLVEMARNGITPNLVSYSSLLHGLCRAGRVELAF 373

Query: 313 EAFESLRSHGFQ-----------------------------------PDKKVYNSMIMAY 337
           E F+ L+  GF+                                   PD   Y+S+I AY
Sbjct: 374 ELFKRLKDQGFKHDHIVYSIVLHGCCQHLDLEICYDLWNDMVHHNFVPDAYNYSSLIYAY 433

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
               Q K  + + ++M++ GI  +      L+  F+  G +  A    + +R     P+L
Sbjct: 434 CRHRQLKEALEVFELMVSDGICPNVVTCTILVHGFSNEGLIGEAFLFLDKVRQFGVVPSL 493

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
            +  +++    +   P+     F  MI+ G+ PD    + +I  + K   L +A  L  +
Sbjct: 494 CTYRVIIHGLCKVNKPNDMWGIFADMIKRGYVPDTVLYSIIIDGFVKALDLQEAFRLYYK 553

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI 517
           +  +G +P   TYT L++ L     + E   L   +   G AP   +  SL   Y +   
Sbjct: 554 MVDEGTKPNIFTYTSLINGLCHDDKLPEVMTLFKHMIGEGLAPDRILYTSLIACYCKRSN 613

Query: 518 EKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
            K AL+   F E + E +  D F   +   L GGF
Sbjct: 614 MKAALEI--FREMETEGLSADSF---VYTCLIGGF 643



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 67/339 (19%), Positives = 138/339 (40%), Gaps = 4/339 (1%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           +L +  +  N   ++ +I     +  +  A  +   M + G VPD+ + ++LV    K G
Sbjct: 273 MLCQRGYPCNNYCFNAVIHGFCHDGQVHKAIEVFDGMKKCGFVPDVHSYSILVDGLCKQG 332

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           ++         +  +G  P+   Y+S++     AG+ +L   L   +   G +    +Y 
Sbjct: 333 DVLTGYYMLVEMARNGITPNLVSYSSLLHGLCRAGRVELAFELFKRLKDQGFKHDHIVYS 392

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            +L    Q  D+     + N M    F P   + + L+ AY +     +A   F+ M+  
Sbjct: 393 IVLHGCCQHLDLEICYDLWNDMVHHNFVPDAYNYSSLIYAYCRHRQLKEALEVFELMVSD 452

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G  P+      ++  +  + L+ +A   L ++ + G  P   TY V++  L ++   N+ 
Sbjct: 453 GICPNVVTCTILVHGFSNEGLIGEAFLFLDKVRQFGVVPSLCTYRVIIHGLCKVNKPNDM 512

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF--ERII 544
             +   + + G  P   +   + D + +A   ++A +   + +   E   P+ F    +I
Sbjct: 513 WGIFADMIKRGYVPDTVLYSIIIDGFVKALDLQEAFRL--YYKMVDEGTKPNIFTYTSLI 570

Query: 545 NGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQT 583
           NGL     L +   +   M  +G A    L  +LI+   
Sbjct: 571 NGLCHDDKLPEVMTLFKHMIGEGLAPDRILYTSLIACYC 609



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 136/325 (41%), Gaps = 16/325 (4%)

Query: 251 ESFQTNVRDYSKLID--AHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNL 308
           E  + N   Y+  +    HAK+  ++ A   L+ + + G   +      ++H +   G +
Sbjct: 242 EGVRPNAATYATYLYGLCHAKQ--VKSAWNFLQMLCQRGYPCNNYCFNAVIHGFCHDGQV 299

Query: 309 DRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLAL 368
            +A E F+ ++  GF PD   Y+ ++      G    G  ++  M  +GI  +   Y +L
Sbjct: 300 HKAIEVFDGMKKCGFVPDVHSYSILVDGLCKQGDVLTGYYMLVEMARNGITPNLVSYSSL 359

Query: 369 LRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH 428
           L    + G V  A ++   ++ + F+      ++++    Q  D +     ++ M+    
Sbjct: 360 LHGLCRAGRVELAFELFKRLKDQGFKHDHIVYSIVLHGCCQHLDLEICYDLWNDMVHHNF 419

Query: 429 KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQ 488
            PD    +S+I AY +   L +AL +   +  DG  P   T T+LV       LI EA  
Sbjct: 420 VPDAYNYSSLIYAYCRHRQLKEALEVFELMVSDGICPNVVTCTILVHGFSNEGLIGEAFL 479

Query: 489 LLGKISELGEAPPFKIQVSLCD----MYARAGIEKKALQALGFLEAKKEQMGPDD--FER 542
            L K+ + G  P      SLC     ++    + K       F +  K    PD   +  
Sbjct: 480 FLDKVRQFGVVP------SLCTYRVIIHGLCKVNKPNDMWGIFADMIKRGYVPDTVLYSI 533

Query: 543 IINGLLAGGFLQDAQRVHGLMEAQG 567
           II+G +    LQ+A R++  M  +G
Sbjct: 534 IIDGFVKALDLQEAFRLYYKMVDEG 558



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 80/174 (45%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS +ID   K   L++A R+  KM + G  P+I T T L++       L      F+ + 
Sbjct: 531 YSIIIDGFVKALDLQEAFRLYYKMVDEGTKPNIFTYTSLINGLCHDDKLPEVMTLFKHMI 590

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  PD+ +Y S+I  Y      K  + +   M T G+     +Y  L+  F++   + 
Sbjct: 591 GEGLAPDRILYTSLIACYCKRSNMKAALEIFREMETEGLSADSFVYTCLIGGFSKVLAMD 650

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           GA      M  +   PT+ + T L+  Y + GD  +A + ++ M++ G  PD +
Sbjct: 651 GAQLFMEEMMNKGLTPTVVTYTDLIVGYFKIGDEKKAMAMYNSMLQAGIAPDAK 704



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/201 (20%), Positives = 84/201 (41%), Gaps = 2/201 (0%)

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSH--GFQPDKKVYNSM 333
           A  +   M  +G  P++ + +VL+ MY+    L   +           G +P+   Y + 
Sbjct: 195 ARSLFDDMKSSGPSPNVYSYSVLMSMYTHGAKLCLEEALELLSEMEVEGVRPNAATYATY 254

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           +    +A Q K   + + M+   G   +   + A++  F   G V  A ++ + M+   F
Sbjct: 255 LYGLCHAKQVKSAWNFLQMLCQRGYPCNNYCFNAVIHGFCHDGQVHKAIEVFDGMKKCGF 314

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
            P + S ++LV+   + GD          M R G  P+    +S++    +   ++ A  
Sbjct: 315 VPDVHSYSILVDGLCKQGDVLTGYYMLVEMARNGITPNLVSYSSLLHGLCRAGRVELAFE 374

Query: 454 LLLELEKDGFEPGPATYTVLV 474
           L   L+  GF+     Y++++
Sbjct: 375 LFKRLKDQGFKHDHIVYSIVL 395



 Score = 43.1 bits (100), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 7/95 (7%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           LS +SF      Y+ LI   +K   ++ A+  +++M   G+ P +VT T L+  Y K G+
Sbjct: 629 LSADSFV-----YTCLIGGFSKVLAMDGAQLFMEEMMNKGLTPTVVTYTDLIVGYFKIGD 683

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
             +A   + S+   G  PD K+  S I+   N G 
Sbjct: 684 EKKAMAMYNSMLQAGIAPDAKL--SCILGLGNDGH 716


>gi|255540881|ref|XP_002511505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550620|gb|EEF52107.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 876

 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 122/265 (46%), Gaps = 3/265 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + ++  Q NV  Y++LI ++ + N L DA  +  +M   G  PD VT   L+ +++KAG 
Sbjct: 406 MVKDGCQPNVVTYNRLIHSYGRANYLNDAVDVFNEMQRVGCEPDRVTYCTLIDIHAKAGF 465

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           LD A E ++ +++ G  PD   Y+ +I     AG       L   M+  G   +   Y  
Sbjct: 466 LDFALEMYQRMQAAGLSPDTFTYSVIINCLGKAGHLAAAHKLFCEMVEQGCVPNLVTYNI 525

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++   A+  + + A ++   M+   FQP   + ++++E  G  G  D+A + F  M R  
Sbjct: 526 MIALQAKARNYQSALKLYRDMQSAGFQPDKVTYSIVMEVLGHCGYLDEAEAVFSEMKRKN 585

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD+     ++  +GK   ++KA      +   G  P   T   L+    R+  + +A 
Sbjct: 586 WVPDEPVYGLLVDLWGKAGNVEKAWQWYQTMLNTGLRPNVPTCNSLLSAFLRVHKLADAY 645

Query: 488 QLLGKISELGEAPP---FKIQVSLC 509
            LL  + ELG  P    + + +S C
Sbjct: 646 NLLQSMLELGLNPSLQTYTLLLSCC 670



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/274 (21%), Positives = 112/274 (40%), Gaps = 35/274 (12%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           +  F  +   Y+ ++    +        ++L +M ++G  P++VT   L+H Y +A  L+
Sbjct: 373 QPGFNHDGHTYTTMVGILGRAKQFGAINKLLDQMVKDGCQPNVVTYNRLIHSYGRANYLN 432

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A + F  ++  G +PD+  Y ++I  +  AG     + +   M  +G+      Y    
Sbjct: 433 DAVDVFNEMQRVGCEPDRVTYCTLIDIHAKAGFLDFALEMYQRMQAAGLSPDTFTY---- 488

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
                                          ++++   G+AG    A   F  M+  G  
Sbjct: 489 -------------------------------SVIINCLGKAGHLAAAHKLFCEMVEQGCV 517

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           P+      MIA   K      AL L  +++  GF+P   TY+++++ LG    ++EAE +
Sbjct: 518 PNLVTYNIMIALQAKARNYQSALKLYRDMQSAGFQPDKVTYSIVMEVLGHCGYLDEAEAV 577

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
             ++      P   +   L D++ +AG  +KA Q
Sbjct: 578 FSEMKRKNWVPDEPVYGLLVDLWGKAGNVEKAWQ 611



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 87/186 (46%)

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
           QP + +   L+ +YG+A   + A   F+ M R+G +PD     ++I  + K   LD AL 
Sbjct: 412 QPNVVTYNRLIHSYGRANYLNDAVDVFNEMQRVGCEPDRVTYCTLIDIHAKAGFLDFALE 471

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
           +   ++  G  P   TY+V+++ LG+   +  A +L  ++ E G  P       +  + A
Sbjct: 472 MYQRMQAAGLSPDTFTYSVIINCLGKAGHLAAAHKLFCEMVEQGCVPNLVTYNIMIALQA 531

Query: 514 RAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASER 573
           +A   + AL+    +++   Q     +  ++  L   G+L +A+ V   M+ + +   E 
Sbjct: 532 KARNYQSALKLYRDMQSAGFQPDKVTYSIVMEVLGHCGYLDEAEAVFSEMKRKNWVPDEP 591

Query: 574 LKVALI 579
           +   L+
Sbjct: 592 VYGLLV 597



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/309 (22%), Positives = 125/309 (40%), Gaps = 47/309 (15%)

Query: 219 QPSRIDWINLLD-----RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCL 273
           +P R+ +  L+D        +   ++Y ++    LS ++F      YS +I+   K   L
Sbjct: 447 EPDRVTYCTLIDIHAKAGFLDFALEMYQRMQAAGLSPDTFT-----YSVIINCLGKAGHL 501

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
             A ++  +M E G VP++VT  +++ + +KA N   A + +  ++S GFQPDK  Y+ +
Sbjct: 502 AAAHKLFCEMVEQGCVPNLVTYNIMIALQAKARNYQSALKLYRDMQSAGFQPDKVTYSIV 561

Query: 334 IMAYVNAG--------------------QPKLGMSLVDM----------------MITSG 357
           +    + G                    +P  G+ LVD+                M+ +G
Sbjct: 562 MEVLGHCGYLDEAEAVFSEMKRKNWVPDEPVYGL-LVDLWGKAGNVEKAWQWYQTMLNTG 620

Query: 358 IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
           +  +     +LL +F +   +  A  +   M      P+L++ TLL+    +A  P    
Sbjct: 621 LRPNVPTCNSLLSAFLRVHKLADAYNLLQSMLELGLNPSLQTYTLLLSCCTEARSPYDMG 680

Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
              + M   GH       +   A    +N+ D A   L  +  +  E        +VD+L
Sbjct: 681 IYCELMAVTGHPAHMFLLSLPSAGPDGQNVRDHASKFLDLMHSEDRESKRGLVDAVVDFL 740

Query: 478 GRLQLINEA 486
            +  L  EA
Sbjct: 741 HKSGLKEEA 749



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 6/153 (3%)

Query: 419 NFDYMIRL--GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476
           NF Y ++   G   D     +M+   G+         LL ++ KDG +P   TY  L+  
Sbjct: 365 NFFYWLKRQPGFNHDGHTYTTMVGILGRAKQFGAINKLLDQMVKDGCQPNVVTYNRLIHS 424

Query: 477 LGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG 536
            GR   +N+A  +  ++  +G  P      +L D++A+AG    AL+    ++A    + 
Sbjct: 425 YGRANYLNDAVDVFNEMQRVGCEPDRVTYCTLIDIHAKAGFLDFALEMYQRMQAAG--LS 482

Query: 537 PDDFER--IINGLLAGGFLQDAQRVHGLMEAQG 567
           PD F    IIN L   G L  A ++   M  QG
Sbjct: 483 PDTFTYSVIINCLGKAGHLAAAHKLFCEMVEQG 515


>gi|297743291|emb|CBI36158.3| unnamed protein product [Vitis vinifera]
          Length = 638

 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 104/412 (25%), Positives = 173/412 (41%), Gaps = 23/412 (5%)

Query: 170 EKIHE-RGEMILPEEPKPITGKCKLITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWIN 227
           EK+HE   EM    +  P T     +      L +++    L  E KE  L P+   +  
Sbjct: 211 EKVHELYNEMCNEGDCLPDTVTYSALIAAFGKLGRDDSAISLFDEMKENGLHPTAKIYTT 270

Query: 228 LLDRLREQNTQLYFKVAE------LV--LSEESFQTNVRDYSKLIDAHAKENCLEDAERI 279
           +L         +YFK+        LV  + E+     V  Y++LI    K   +E+A  I
Sbjct: 271 ILG--------IYFKLGRVEKALGLVQEMKEKGCALTVYTYTELIKGVGKAGKVEEAYSI 322

Query: 280 LKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA-YV 338
              M + G  PD+V    L+++  KAG L  A + FE + S    P+   YN++I A + 
Sbjct: 323 FMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIKALFE 382

Query: 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398
           +  +        + M  +G+  S   Y  L+  F +   V  A  +   M  + F P   
Sbjct: 383 SKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPA 442

Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
           +   L+ A G+A   + A   F  +         R  A MI   GK   L +A++L  E+
Sbjct: 443 AYCSLINALGKAKRYEAANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEM 502

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
           +K G  P    Y  L+  + R+ + +EA  LL  + E G  P       + + +AR G  
Sbjct: 503 KKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNGFARTGGP 562

Query: 519 KKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
           K A++   F   K  ++ PD   +  ++  L   G  ++A ++   M ++GF
Sbjct: 563 KGAIEM--FTRMKNSKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKGF 612



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 128/291 (43%), Gaps = 2/291 (0%)

Query: 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318
           D S+++    K   +  A  I  ++      P   T   ++ M  + G+ ++  E +  +
Sbjct: 161 DLSEIVKVLGKAKMVNKALSIFYQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEM 220

Query: 319 RSHG-FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
            + G   PD   Y+++I A+   G+    +SL D M  +G+  + +IY  +L  + + G 
Sbjct: 221 CNEGDCLPDTVTYSALIAAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGR 280

Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
           V  A  +   M+ +    T+ + T L++  G+AG  ++A S F  M++ G KPD     +
Sbjct: 281 VEKALGLVQEMKEKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINN 340

Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL-INEAEQLLGKISEL 496
           +I   GK   L  A+ L  E+E     P   TY  ++  L   +   +EA     K+ E 
Sbjct: 341 LINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKEN 400

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
           G  P       L D + +    +KAL  L  ++ K     P  +  +IN L
Sbjct: 401 GVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINAL 451



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 94/221 (42%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS LID   K N +E A  +L++M+E G  P       L++   KA   + A E F+ LR
Sbjct: 409 YSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANELFQELR 468

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
            +      +VY  MI      G+    + L + M   G       Y AL+    + G   
Sbjct: 469 ENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTD 528

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  +   M      P L S  +++  + + G P  A   F  M     KPD     +++
Sbjct: 529 EAHSLLRTMEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVL 588

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
               +  + ++A  L+ E+   GFE    TY+ +++ +G++
Sbjct: 589 GCLSRAGMFEEAAKLMKEMNSKGFEYDLITYSSILEAVGKI 629



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 83/197 (42%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E+ F      Y  LI+A  K    E A  + +++ EN          V++    K G 
Sbjct: 432 MDEKGFAPCPAAYCSLINALGKAKRYEAANELFQELRENCGYSSARVYAVMIKHLGKCGR 491

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L  A + F  ++  G  PD   YN+++   V  G      SL+  M  +G       +  
Sbjct: 492 LSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNI 551

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           +L  FA+ G  +GA ++   M+  + +P + S   ++    +AG  ++A      M   G
Sbjct: 552 ILNGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKG 611

Query: 428 HKPDDRCTASMIAAYGK 444
            + D    +S++ A GK
Sbjct: 612 FEYDLITYSSILEAVGK 628


>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
          Length = 1128

 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 146/335 (43%), Gaps = 2/335 (0%)

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
            R  + L+   AK    +  +R  K M   G  P + T  +++    K G+++ A+  FE
Sbjct: 98  TRSCNGLLHKFAKLGKTDGVKRFFKDMIGAGSKPTVFTYNIMIDCMWKEGDIEAARGLFE 157

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
            ++  G  PD   YNSMI  Y   G+    +   + M +   E     Y +L+  F + G
Sbjct: 158 EMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCKSG 217

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
            +    +    M+    +P + S + LV+A+ +     QA   +  M R+GH P++    
Sbjct: 218 KLPKGLEFYREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYT 277

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
           S++ A  K   L  A  L  E+ + G E    TYT L+D L   + + EAE+L GK+   
Sbjct: 278 SLVDANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTA 337

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDA 556
           G  P      +L   + +A    +AL+ L  L+ +  Q     +   I GL     ++ A
Sbjct: 338 GVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTFIWGLCGLEKIEAA 397

Query: 557 QRVHGLMEAQGFAASERLKVALISSQTFNRQRQPT 591
           + V   M+  G  A+  +   L+ +  + +   PT
Sbjct: 398 KVVMNEMQENGIKANTLIYTTLMDA--YFKSGNPT 430



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 136/282 (48%), Gaps = 7/282 (2%)

Query: 220 PSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAER 278
           P+   + +L+D   +  N    F++A  +L E   + NV  Y+ LID       +++AE+
Sbjct: 271 PNEFTYTSLVDANCKIGNLSDAFRLANEML-EVGVEWNVVTYTALIDGLCDAERMKEAEK 329

Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338
           +  KM   G++P++ +   L+H + KA N+DRA E    L+  G QPD  +Y + I    
Sbjct: 330 LFGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTFIWGLC 389

Query: 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398
              + +    +++ M  +GI+ +  IY  L+ ++ + G+      +   M+  + + T+ 
Sbjct: 390 GLEKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTVV 449

Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIR-LGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
           +  +L++   +     +A   F  M    G +P+     +MI    K+N +  A  L  +
Sbjct: 450 TFCVLIDGLCKNKLVSKAIDYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAATTLFEQ 509

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLIN--EAEQLLGKISELG 497
           + ++G  P    YT L+D  G L+  N  EA  L  K++E+G
Sbjct: 510 MAQEGLVPDRTAYTSLMD--GNLKQGNMLEALALRDKMAEIG 549



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 142/342 (41%), Gaps = 35/342 (10%)

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           V  Y+ +ID   KE  +E A  + ++M   G++PD VT   ++  Y K G LD     FE
Sbjct: 133 VFTYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFE 192

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF---- 372
            ++S   +PD   YNS+I  +  +G+   G+     M  SG++ +   Y  L+ +F    
Sbjct: 193 EMKSMSCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTLVDAFCKED 252

Query: 373 -----------------------------AQC--GDVRGAGQITNIMRIEEFQPTLESCT 401
                                        A C  G++  A ++ N M     +  + + T
Sbjct: 253 MMQQAIKFYVDMRRVGHVPNEFTYTSLVDANCKIGNLSDAFRLANEMLEVGVEWNVVTYT 312

Query: 402 LLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD 461
            L++    A    +A   F  M+  G  P+     ++I  + K   +D+AL LL EL+  
Sbjct: 313 ALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGR 372

Query: 462 GFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKA 521
           G +P    Y   +  L  L+ I  A+ ++ ++ E G      I  +L D Y ++G   + 
Sbjct: 373 GIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFKSGNPTEG 432

Query: 522 LQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLM 563
           L  L  ++    ++    F  +I+GL     +  A    G M
Sbjct: 433 LHLLEEMQELDHEVTVVTFCVLIDGLCKNKLVSKAIDYFGRM 474



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/238 (21%), Positives = 108/238 (45%), Gaps = 4/238 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           +S LID       LE+A +   KM    + P   +   L+H ++K G  D  K  F+ + 
Sbjct: 70  FSVLIDL----GMLEEATQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRFFKDMI 125

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +P    YN MI      G  +    L + M   G+      Y +++  + + G + 
Sbjct: 126 GAGSKPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLD 185

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
                   M+    +P + +   L+  + ++G   +    +  M + G KP+    ++++
Sbjct: 186 DTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTLV 245

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
            A+ K++++ +A+   +++ + G  P   TYT LVD   ++  +++A +L  ++ E+G
Sbjct: 246 DAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLVDANCKIGNLSDAFRLANEMLEVG 303



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/222 (20%), Positives = 89/222 (40%), Gaps = 4/222 (1%)

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
           ++ AL       G +  A Q  + M+     P   SC  L+  + + G  D  +  F  M
Sbjct: 65  VFDALFSVLIDLGMLEEATQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRFFKDM 124

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483
           I  G KP       MI    K+  ++ A  L  E++  G  P   TY  ++D  G++  +
Sbjct: 125 IGAGSKPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRL 184

Query: 484 NEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFE 541
           ++      ++  +   P      SL + + ++G   K L+   + E K+  + P+   + 
Sbjct: 185 DDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEF--YREMKQSGLKPNVVSYS 242

Query: 542 RIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQT 583
            +++       +Q A + +  M   G   +E    +L+ +  
Sbjct: 243 TLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLVDANC 284


>gi|147812173|emb|CAN61517.1| hypothetical protein VITISV_033966 [Vitis vinifera]
          Length = 635

 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 151/323 (46%), Gaps = 10/323 (3%)

Query: 242 KVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM 301
           K+ ZL+  +E+ + N+R Y+ L+ A   +  +  A  ++ KM  +G+ PD VT   +   
Sbjct: 198 KLLZLMSQDENVRPNLRTYNVLVRAWCNKXNIMKAWNVVYKMVASGLQPDAVTYNTIATA 257

Query: 302 YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS 361
           Y++ G   +A+     +++   QP+++    +I  Y   G+ K  +  V  M   G++ +
Sbjct: 258 YAQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGYCKEGKIKEALQFVYRMKDLGLQPN 317

Query: 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEF--QPTLESCTLLVEAYGQAGDPDQARSN 419
             ++ +L++ F    D  G  ++  +M  EEF  +P + + + ++ A+  AG  D+ R  
Sbjct: 318 LVVFNSLIKGFIDAVDRDGVNEVLTLM--EEFGVKPDVITFSTIMNAWSAAGFMDKCREI 375

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD-WL- 477
           FD M++   +PD    + +   Y +    +KA  +L  + K GF P    +T +++ W  
Sbjct: 376 FDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMIKSGFHPNVVMFTTIINGWCS 435

Query: 478 -GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG 536
            GR++    A ++  K+ E G AP  K   +L   Y  A    K+ + L  +E    Q  
Sbjct: 436 AGRMEY---AIKIFEKMCECGIAPNLKTFETLIWGYGEARQPWKSEEVLQIMEEFNVQPE 492

Query: 537 PDDFERIINGLLAGGFLQDAQRV 559
                 +     A G  ++A R+
Sbjct: 493 KTTLLLVAEAWRATGLKKEANRI 515



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/342 (19%), Positives = 149/342 (43%), Gaps = 31/342 (9%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+ A   +   +    I+ ++ ENG+ PD +    +++ +S++GN+  A + F  ++
Sbjct: 110 YTTLLAALTIQKHFDSIHSIISQVEENGMEPDSIFFNAVINAFSESGNMQEAMKYFWKMK 169

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS-GIERSEEIYLALLRSFAQCGDV 378
             G +P    +N++I  Y  AG+P+    L+++M     +  +   Y  L+R++    ++
Sbjct: 170 ESGSKPTTSTFNTLIKGYGIAGEPEESQKLLZLMSQDENVRPNLRTYNVLVRAWCNKXNI 229

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             A  +   M     QP   +   +  AY Q G+  QA      M     +P++R    +
Sbjct: 230 MKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAEGIILEMQNSNVQPNERTCCII 289

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE--AEQLLGKISEL 496
           I  Y K+  + +AL  +  ++  G +P    +  L+   G +  ++     ++L  + E 
Sbjct: 290 IGGYCKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIK--GFIDAVDRDGVNEVLTLMEEF 347

Query: 497 GEAPPFKIQVSLCDMYARAGIEKK--------------------ALQALGFLEAKKEQMG 536
           G  P      ++ + ++ AG   K                    ++ A G++ A +    
Sbjct: 348 GVKPDVITFSTIMNAWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRAGE---- 403

Query: 537 PDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVAL 578
           P+  E I+N ++  GF  +      ++   G+ ++ R++ A+
Sbjct: 404 PEKAEEILNAMIKSGFHPNVVMFTTII--NGWCSAGRMEYAI 443



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/314 (21%), Positives = 139/314 (44%), Gaps = 2/314 (0%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
            LS+ S +T VR  +KL++   ++   ++ + IL  + E G  P +VT T L+   +   
Sbjct: 63  CLSKTSCRT-VRSRTKLMNIMIEKGRPQEVQSILDSIIEGGHKPSLVTYTTLLAALTIQK 121

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           + D        +  +G +PD   +N++I A+  +G  +  M     M  SG + +   + 
Sbjct: 122 HFDSIHSIISQVEENGMEPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFN 181

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEE-FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
            L++ +   G+   + ++  +M  +E  +P L +  +LV A+    +  +A +    M+ 
Sbjct: 182 TLIKGYGIAGEPEESQKLLZLMSQDENVRPNLRTYNVLVRAWCNKXNIMKAWNVVYKMVA 241

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
            G +PD     ++  AY +     +A  ++LE++    +P   T  +++    +   I E
Sbjct: 242 SGLQPDAVTYNTIATAYAQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGYCKEGKIKE 301

Query: 486 AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIIN 545
           A Q + ++ +LG  P   +  SL   +  A       + L  +E    +     F  I+N
Sbjct: 302 ALQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNEVLTLMEEFGVKPDVITFSTIMN 361

Query: 546 GLLAGGFLQDAQRV 559
              A GF+   + +
Sbjct: 362 AWSAAGFMDKCREI 375



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 70/353 (19%), Positives = 162/353 (45%), Gaps = 12/353 (3%)

Query: 195 TDKILSL-EKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESF 253
           + K+L L  ++E+  P L  +  L++     W N  + ++  N      V ++V S    
Sbjct: 196 SQKLLZLMSQDENVRPNLRTYNVLVRA----WCNKXNIMKAWNV-----VYKMVAS--GL 244

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           Q +   Y+ +  A+A+      AE I+ +M  + + P+  T  +++  Y K G +  A +
Sbjct: 245 QPDAVTYNTIATAYAQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGYCKEGKIKEALQ 304

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
               ++  G QP+  V+NS+I  +++A        ++ +M   G++     +  ++ +++
Sbjct: 305 FVYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNEVLTLMEEFGVKPDVITFSTIMNAWS 364

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
             G +    +I + M     QP     ++L + Y +AG+P++A    + MI+ G  P+  
Sbjct: 365 AAGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMIKSGFHPNVV 424

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
              ++I  +     ++ A+ +  ++ + G  P   T+  L+   G  +   ++E++L  +
Sbjct: 425 MFTTIINGWCSAGRMEYAIKIFEKMCECGIAPNLKTFETLIWGYGEARQPWKSEEVLQIM 484

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
            E    P     + + + +   G++K+A + L  ++ ++     D  ++I  G
Sbjct: 485 EEFNVQPEKTTLLLVAEAWRATGLKKEANRILSAVKNEETTHETDREDKIPVG 537


>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
 gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 88/398 (22%), Positives = 170/398 (42%), Gaps = 5/398 (1%)

Query: 186 PITGKCKLITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKVA 244
           P T    ++ +    L++ +    +LA+  +L LQP+ + +  L++ L +     + +  
Sbjct: 8   PNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGK--FAQAV 65

Query: 245 ELV--LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMY 302
           EL   +     Q +   Y+ +I+   K      A  + KKM E G   ++VT + L+H  
Sbjct: 66  ELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHSL 125

Query: 303 SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE 362
            K   ++ A + F  +++    P    Y S+I    N  + K   +L++ M +  I  + 
Sbjct: 126 CKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNV 185

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
             +  L+ +F + G V  A  +   M     +P + +   L+  Y    +  +AR  FD 
Sbjct: 186 VTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDV 245

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
           MI  G KPD    + +I  Y K   +D+A  L  E+   G  P   +Y  L+  L +L  
Sbjct: 246 MITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGR 305

Query: 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFER 542
           + EA+ L   +   G  P       L D + + G   KA +    +++   +     +  
Sbjct: 306 LREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNI 365

Query: 543 IINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
           ++N +   G L+DA+ +   +   G   + ++   +I+
Sbjct: 366 LVNAMCKSGNLKDARELFSELFVIGLQPNVQIYTTIIN 403



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 145/317 (45%), Gaps = 10/317 (3%)

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           +  Y+ LI      +  ++A  +L +M    I+P++VT  VLV  + K G +  A+   +
Sbjct: 150 IFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLK 209

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
           ++   G +PD   YNS++  Y    +      L D+MIT G +     Y  L+  + +  
Sbjct: 210 TMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAK 269

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
            +  A Q+ N M  +   P   S   L+    Q G   +A+  F  M   G+ P+    A
Sbjct: 270 RIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYA 329

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
            ++  + K+  L KA  L   ++    +P    Y +LV+ + +   + +A +L  ++  +
Sbjct: 330 ILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAMCKSGNLKDARELFSELFVI 389

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQ-- 554
           G  P  +I  ++ +   + G+  +AL+A  F   + +   PD+F      ++  GFLQ  
Sbjct: 390 GLQPNVQIYTTIINGLCKEGLLDEALEA--FRNMEDDGCPPDEFSY---NVIIRGFLQHK 444

Query: 555 -DAQRVH--GLMEAQGF 568
            +++ VH  G M  +GF
Sbjct: 445 DESRAVHLIGEMRDRGF 461



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 144/303 (47%), Gaps = 5/303 (1%)

Query: 198 ILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTN 256
           + +  + ++ S LL E   L + P+ + +  L+D   ++   L  +     ++E   + +
Sbjct: 160 LCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPD 219

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           V  Y+ L+  ++    + +A ++   M   G  PD+ + ++L++ Y KA  +D AK+ F 
Sbjct: 220 VVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFN 279

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
            +   G  P+   YN++I      G+ +    L   M T+G   +   Y  LL  F + G
Sbjct: 280 EMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQG 339

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
            +  A ++   M+    +P L    +LV A  ++G+   AR  F  +  +G +P+ +   
Sbjct: 340 YLGKAFRLFRAMQSTYLKPNLVMYNILVNAMCKSGNLKDARELFSELFVIGLQPNVQIYT 399

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE--AEQLLGKIS 494
           ++I    K+ LLD+AL     +E DG  P   +Y V++   G LQ  +E  A  L+G++ 
Sbjct: 400 TIINGLCKEGLLDEALEAFRNMEDDGCPPDEFSYNVIIR--GFLQHKDESRAVHLIGEMR 457

Query: 495 ELG 497
           + G
Sbjct: 458 DRG 460


>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
          Length = 1512

 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 119/245 (48%)

Query: 256  NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
            ++  Y+ L++       LEDA ++ + + + GI  ++ +  +L++ Y K   +D A   F
Sbjct: 1224 DILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFF 1283

Query: 316  ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
            E +R  G +P    YN++I A   +G+ +    L   M T G       Y  LL    + 
Sbjct: 1284 EEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKN 1343

Query: 376  GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
            G +  A  +   ++  E +P +E  ++L++   +AG  ++A   FD + + G +PD    
Sbjct: 1344 GHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAY 1403

Query: 436  ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
              +I     K +L +A+ LL ++E+ G  P   T+ V++  L +   I+EA QLL ++  
Sbjct: 1404 NILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRN 1463

Query: 496  LGEAP 500
               +P
Sbjct: 1464 RNFSP 1468



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/303 (22%), Positives = 129/303 (42%)

Query: 256  NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
            +V  Y  +IDA  K+    +A  +  +M   GI+PD+V  + L+    + G L  A E F
Sbjct: 1084 DVFTYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFF 1143

Query: 316  ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
            + +   G   D   YNS+I     AG  K     +++M+  G       +  L+    + 
Sbjct: 1144 KEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKE 1203

Query: 376  GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
            G V  A QI  +MR +  +P + +   L+      G  + A   F+ +   G K +    
Sbjct: 1204 GKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSY 1263

Query: 436  ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
              +I  Y K   +D+A     E+   G +P   TY  L+  L +   +  A++L  ++  
Sbjct: 1264 NILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQT 1323

Query: 496  LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
             G+         L D   + G  ++A+     ++  + +   + F  +++G+   G L++
Sbjct: 1324 CGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEE 1383

Query: 556  AQR 558
            A +
Sbjct: 1384 AWK 1386



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 67/301 (22%), Positives = 123/301 (40%), Gaps = 3/301 (0%)

Query: 260  YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
            ++ L+ + AK         + +K+N+ GI PD+ T  +L+H       +      F    
Sbjct: 949  FNHLLASVAKLGYYSTVFPMYRKINDVGIQPDLYTLNILIHCCCSLRAVGCGFGVFGGFL 1008

Query: 320  SHGFQPDKKVYNSMIMA-YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
              GF+PD     +++   ++  G P   + L D M   G+    + Y  L+    +    
Sbjct: 1009 KRGFEPDAVTVTTLVKGVWMENGIPD-AVQLFDEMTKKGLLGDAKTYGILINGLCKARKT 1067

Query: 379  RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
              A ++   M+    +  + +  ++++A  + G   +A   F  MI  G  PD    +S+
Sbjct: 1068 GLAIKLHEKMK-GNCKGDVFTYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSL 1126

Query: 439  IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
            +    +   L +AL    E+E  G      TY  L+  L R  L  E    L  + + G 
Sbjct: 1127 MDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGF 1186

Query: 499  APPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQR 558
            +P       L D   + G   +A Q L  +  K ++     +  ++NGL   G L+DA +
Sbjct: 1187 SPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATK 1246

Query: 559  V 559
            +
Sbjct: 1247 L 1247


>gi|15225722|ref|NP_180822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75160493|sp|Q8S8P6.1|PP180_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g32630
 gi|20197234|gb|AAM14987.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330253613|gb|AEC08707.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 624

 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 76/335 (22%), Positives = 145/335 (43%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           V+ ++    N   Y+ L++   K   + DAE++  +M E GI  D+   T L+    + G
Sbjct: 284 VMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLISWNCRKG 343

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           N+ RA   F+ L   G  P    Y ++I      G+      L++ M + G+  ++ ++ 
Sbjct: 344 NMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFN 403

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+  + + G V  A  I ++M  + FQ  + +C  +   + +    D+A+     M+  
Sbjct: 404 TLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEG 463

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G K       ++I  Y K+  +++A  L +E+   G +P   TY V++    +   I EA
Sbjct: 464 GVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEA 523

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
            +L   +   G  P      SL      A    +A++    +  K        +  +I+G
Sbjct: 524 RKLRANMEANGMDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISG 583

Query: 547 LLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
           L   G   +A  ++  M+ +G+    ++  ALI S
Sbjct: 584 LSKAGKSDEAFGLYDEMKRKGYTIDNKVYTALIGS 618



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 146/323 (45%), Gaps = 4/323 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +I+A+ K+      E +LK M ++G+V + VT T+L+ +  K G +  A++ F+ +R
Sbjct: 262 YNTIINAYVKQRDFSGVEGVLKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMR 321

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G + D  VY S+I      G  K    L D +   G+  S   Y AL+    + G++ 
Sbjct: 322 ERGIESDVHVYTSLISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMG 381

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  + N M+ +    T      L++ Y + G  D+A   +D M + G + D     ++ 
Sbjct: 382 AAEILMNEMQSKGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIA 441

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
           + + +    D+A   L  + + G +    +YT L+D   +   + EA++L  ++S  G  
Sbjct: 442 SCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQ 501

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQDAQ 557
           P       +   Y + G  K+A +    +EA    M PD   +  +I+G      + +A 
Sbjct: 502 PNAITYNVMIYAYCKQGKIKEARKLRANMEA--NGMDPDSYTYTSLIHGECIADNVDEAM 559

Query: 558 RVHGLMEAQGFAASERLKVALIS 580
           R+   M  +G   +      +IS
Sbjct: 560 RLFSEMGLKGLDQNSVTYTVMIS 582



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 107/263 (40%), Gaps = 39/263 (14%)

Query: 272 CLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYN 331
           CLE    I ++M ++G+   + + T++V    + G ++++K+  +     G +P+   YN
Sbjct: 208 CLE----IFRRMVDSGVKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSVKGIKPEAYTYN 263

Query: 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391
           ++I AYV                               R F+      G   +  +M+ +
Sbjct: 264 TIINAYVKQ-----------------------------RDFS------GVEGVLKVMKKD 288

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
                  + TLL+E   + G    A   FD M   G + D     S+I+   +K  + +A
Sbjct: 289 GVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLISWNCRKGNMKRA 348

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
             L  EL + G  P   TY  L+D + ++  +  AE L+ ++   G      +  +L D 
Sbjct: 349 FLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDG 408

Query: 512 YARAGIEKKALQALGFLEAKKEQ 534
           Y R G+  +A      +E K  Q
Sbjct: 409 YCRKGMVDEASMIYDVMEQKGFQ 431



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 78/374 (20%), Positives = 157/374 (41%), Gaps = 46/374 (12%)

Query: 234 EQNTQLYFK----VAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIV 289
           + N  L F     V  LVLSE +  T              ++C+ D  ++L++  E+ + 
Sbjct: 51  QSNPSLLFNLNSNVTRLVLSEPTLPT--------------QSCI-DFFKLLREF-ESNLK 94

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGF--QPDKKVYNSMI------------- 334
           PD+     L H        +  +    S+ + GF  +P +++ ++M+             
Sbjct: 95  PDLTAVVTLSHRLYSNRRFNEMRSLLNSVVNDGFYKRPVEELGSAMVDCDISEEKFEFFE 154

Query: 335 -------MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNI 387
                    YV+ G  + G+ + D M+  G+   E   +  L +  +   +    +I   
Sbjct: 155 KFFDLVFRVYVDNGMFEEGLRVFDYMVKKGLSIDERSCIVFLVAAKKRRRIDLCLEIFRR 214

Query: 388 MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447
           M     + T+ S T++VE   + G+ ++++         G KP+     ++I AY K+  
Sbjct: 215 MVDSGVKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSVKGIKPEAYTYNTIINAYVKQRD 274

Query: 448 LDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVS 507
                 +L  ++KDG      TYT+L++   +   +++AE+L  ++ E G      +  S
Sbjct: 275 FSGVEGVLKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTS 334

Query: 508 LCDMYARAGIEKKALQALGFLEAKKEQMGPDDFER--IINGLLAGGFLQDAQRVHGLMEA 565
           L     R G  K+A   L F E  ++ + P  +    +I+G+   G +  A+ +   M++
Sbjct: 335 LISWNCRKGNMKRAF--LLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQS 392

Query: 566 QGFAASERLKVALI 579
           +G   ++ +   LI
Sbjct: 393 KGVNITQVVFNTLI 406


>gi|15218855|ref|NP_171855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180297|sp|Q9LR67.1|PPR9_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g03560, mitochondrial; Flags: Precursor
 gi|9280662|gb|AAF86531.1|AC002560_24 F21B7.18 [Arabidopsis thaliana]
 gi|332189465|gb|AEE27586.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 142/335 (42%), Gaps = 38/335 (11%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F   V   + LI +  K   +E+   + +KM ENGI P + T   L++    A  +D A+
Sbjct: 183 FPMTVSAANALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAE 242

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
             FE + S   +PD   YN+MI  Y  AGQ +  M  +  M T G E  +  Y+ ++++ 
Sbjct: 243 RVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQAC 302

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
               D      +   M  +  Q    + +L++    + G  ++  + F+ MIR G KP+ 
Sbjct: 303 YADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNV 362

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTV-------------------- 472
                +I  Y K   ++ A+ LL  +  +GF+P   TY+V                    
Sbjct: 363 AIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHT 422

Query: 473 ---------------LVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI 517
                          L+D LG+   ++EAE+L  ++SE G         +L D + +   
Sbjct: 423 CRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTK--- 479

Query: 518 EKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
            +K  +A+   +  +E+ G D        LL+G F
Sbjct: 480 HRKVDEAIALFKRMEEEEGCDQTVYTYTILLSGMF 514



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 130/286 (45%), Gaps = 9/286 (3%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ LID +AK   +EDA R+L +M + G  PD+VT +V+V+   K G ++ A + F
Sbjct: 361 NVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYF 420

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
            + R  G   +   Y+S+I     AG+      L + M   G  R    Y AL+ +F + 
Sbjct: 421 HTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKH 480

Query: 376 GDVRGAGQITNIMRIEE-FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
             V  A  +   M  EE    T+ + T+L+    +    ++A   +D MI  G  P   C
Sbjct: 481 RKVDEAIALFKRMEEEEGCDQTVYTYTILLSGMFKEHRNEEALKLWDMMIDKGITPTAAC 540

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
             ++         + +A  +L EL   G     A    +++ L +   I EA +L   I+
Sbjct: 541 FRALSTGLCLSGKVARACKILDELAPMGVILDAACED-MINTLCKAGRIKEACKLADGIT 599

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK----KEQMG 536
           E G   P +I+  + +   + G   KA  A+  + +K     E+MG
Sbjct: 600 ERGREVPGRIRTVMINALRKVG---KADLAMKLMHSKIGIGYERMG 642



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/284 (20%), Positives = 117/284 (41%), Gaps = 4/284 (1%)

Query: 298 LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG 357
           LV + + A ++DR +     ++   F       N++I ++   G  +  + +   M  +G
Sbjct: 158 LVDVLALAKDVDRIRFVSSEIKKFEFPMTVSAANALIKSFGKLGMVEELLWVWRKMKENG 217

Query: 358 IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
           IE +   Y  L+        V  A ++  +M     +P + +   +++ Y +AG   +A 
Sbjct: 218 IEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAM 277

Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
                M   GH+ D     +MI A    +     + L  E+++ G +  P  +++++  L
Sbjct: 278 EKLRDMETRGHEADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGL 337

Query: 478 GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP 537
            +   +NE   +   +   G  P   I   L D YA++G  + A++ L       E   P
Sbjct: 338 CKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLH--RMIDEGFKP 395

Query: 538 D--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
           D   +  ++NGL   G +++A          G A +     +LI
Sbjct: 396 DVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLI 439


>gi|356563451|ref|XP_003549976.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic-like [Glycine max]
          Length = 714

 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 133/305 (43%), Gaps = 1/305 (0%)

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
           E +  +M +NG+  D +T + ++    K    D+A   FE +      PD+  Y++++  
Sbjct: 209 EELAHQMIDNGVPLDNITYSTIISCAKKCNLYDKAVHWFERMYKTSLMPDEVTYSAILDV 268

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           Y   G+ +  +SL +    +G +     +  L + F + GD  G   +   M     QP 
Sbjct: 269 YARLGKVEEVISLYERGRATGWKPDPITFSVLGKMFGEAGDYDGIRYVFQEMESVGVQPN 328

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           L     L+EA G+AG P  AR  F+ MI LG  P+++   ++I  YGK      AL L  
Sbjct: 329 LVVYNTLLEAMGKAGKPVFARGLFEEMIELGIVPNEKTLTAVIKIYGKARWSRDALELWQ 388

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQ-VSLCDMYARA 515
            ++++G+      Y  L++    + L+ EAE L   + +     P      ++ ++Y   
Sbjct: 389 RMKENGWPMDFILYNTLLNMCADVGLVEEAETLFRDMKQSAHCKPDSWSYTAMLNIYGSQ 448

Query: 516 GIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLK 575
           G   KA++    +     ++    F  +I  L       D  RV G+   +G    +RL 
Sbjct: 449 GDVDKAMKLFNEMCKSGVELNVMGFTCLIQCLGRATEFDDLVRVFGISVERGIKPDDRLC 508

Query: 576 VALIS 580
             L+S
Sbjct: 509 GCLLS 513



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 117/242 (48%), Gaps = 1/242 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS ++D +A+   +E+   + ++    G  PD +T +VL  M+ +AG+ D  +  F+ + 
Sbjct: 262 YSAILDVYARLGKVEEVISLYERGRATGWKPDPITFSVLGKMFGEAGDYDGIRYVFQEME 321

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           S G QP+  VYN+++ A   AG+P     L + MI  GI  +E+   A+++ + +    R
Sbjct: 322 SVGVQPNLVVYNTLLEAMGKAGKPVFARGLFEEMIELGIVPNEKTLTAVIKIYGKARWSR 381

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH-KPDDRCTASM 438
            A ++   M+   +         L+      G  ++A + F  M +  H KPD     +M
Sbjct: 382 DALELWQRMKENGWPMDFILYNTLLNMCADVGLVEEAETLFRDMKQSAHCKPDSWSYTAM 441

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           +  YG +  +DKA+ L  E+ K G E     +T L+  LGR    ++  ++ G   E G 
Sbjct: 442 LNIYGSQGDVDKAMKLFNEMCKSGVELNVMGFTCLIQCLGRATEFDDLVRVFGISVERGI 501

Query: 499 AP 500
            P
Sbjct: 502 KP 503



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 97/206 (47%), Gaps = 4/206 (1%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           Q N+  Y+ L++A  K      A  + ++M E GIVP+  T T ++ +Y KA     A E
Sbjct: 326 QPNLVVYNTLLEAMGKAGKPVFARGLFEEMIELGIVPNEKTLTAVIKIYGKARWSRDALE 385

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV-DMMITSGIERSEEIYLALLRSF 372
            ++ ++ +G+  D  +YN+++    + G  +   +L  DM  ++  +     Y A+L  +
Sbjct: 386 LWQRMKENGWPMDFILYNTLLNMCADVGLVEEAETLFRDMKQSAHCKPDSWSYTAMLNIY 445

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
              GDV  A ++ N M     +  +   T L++  G+A + D     F   +  G KPDD
Sbjct: 446 GSQGDVDKAMKLFNEMCKSGVELNVMGFTCLIQCLGRATEFDDLVRVFGISVERGIKPDD 505

Query: 433 R---CTASMIAAYGKKNLLDKALNLL 455
           R   C  S+++     N  +K L  L
Sbjct: 506 RLCGCLLSVVSLSQGSNDEEKVLACL 531


>gi|296084463|emb|CBI25022.3| unnamed protein product [Vitis vinifera]
          Length = 927

 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 113/221 (51%)

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           V  ++ LI    ++  +E A  IL +M+  GI P+  T T ++H Y+  G+  +A E F 
Sbjct: 583 VHTFNALILGLVEKCQMEKAVEILDEMSLAGISPNEHTYTTIMHGYASLGDTGKAFEYFT 642

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
            L++ G + D   Y +++ A   +G+ +  +++   M +  I R+  +Y  L+  +A+ G
Sbjct: 643 KLKTEGLELDVYTYEALLKACCKSGRMQSALAVTREMSSQKIPRNTFVYNILIDGWARRG 702

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
           DV  A ++   M+ E  QP + + T  + A  +AGD  +A      M  +G KP+ +   
Sbjct: 703 DVWEAAELMQQMKQEGVQPDIHTYTSFINACCKAGDMQRATKTIQEMEVVGVKPNIKTYT 762

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
           ++I  + + +L +KAL    E++  G +P  A Y  L+  L
Sbjct: 763 TLIHGWARASLPEKALKCFQEMKSAGLKPDKAVYHCLMTSL 803



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/375 (19%), Positives = 157/375 (41%), Gaps = 22/375 (5%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAEL--------VLSEESFQTNVRDYSKLIDAHAK 269
             PS I +  L++        LY K+ ++        ++     + N++ YS LI+   +
Sbjct: 439 FTPSVISYGCLIN--------LYIKIGKVSKALEVSKMMEVAGIKHNMKTYSMLINGFVR 490

Query: 270 ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKV 329
                +A  + + + ++G+ PD+V    ++  +   GN+DRA    + ++    +P  + 
Sbjct: 491 LKDWANAFAVFEDVVKDGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRT 550

Query: 330 YNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389
           +  +I  +  +G  +  + + DMM  SG   +   + AL+    +   +  A +I + M 
Sbjct: 551 FMPIIHGFARSGDMRRALEIFDMMRWSGCIPTVHTFNALILGLVEKCQMEKAVEILDEMS 610

Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL---GHKPDDRCTASMIAAYGKKN 446
           +    P   + T ++  Y   GD  +A   F+Y  +L   G + D     +++ A  K  
Sbjct: 611 LAGISPNEHTYTTIMHGYASLGDTGKA---FEYFTKLKTEGLELDVYTYEALLKACCKSG 667

Query: 447 LLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQV 506
            +  AL +  E+           Y +L+D   R   + EA +L+ ++ + G  P      
Sbjct: 668 RMQSALAVTREMSSQKIPRNTFVYNILIDGWARRGDVWEAAELMQQMKQEGVQPDIHTYT 727

Query: 507 SLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQ 566
           S  +   +AG  ++A + +  +E    +     +  +I+G       + A +    M++ 
Sbjct: 728 SFINACCKAGDMQRATKTIQEMEVVGVKPNIKTYTTLIHGWARASLPEKALKCFQEMKSA 787

Query: 567 GFAASERLKVALISS 581
           G    + +   L++S
Sbjct: 788 GLKPDKAVYHCLMTS 802



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/307 (21%), Positives = 132/307 (42%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  +I AH +   +  AE ++++M E GI   I     ++  Y+  GN ++    F+ L+
Sbjct: 376 YGNIIYAHCQACNMTQAEALVREMEEEGIDAPIDIYHTMMDGYTIIGNEEKCLIVFDRLK 435

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             GF P    Y  +I  Y+  G+    + +  MM  +GI+ + + Y  L+  F +  D  
Sbjct: 436 ECGFTPSVISYGCLINLYIKIGKVSKALEVSKMMEVAGIKHNMKTYSMLINGFVRLKDWA 495

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  +   +  +  +P +     ++ A+   G+ D+A      M +  H+P  R    +I
Sbjct: 496 NAFAVFEDVVKDGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPII 555

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             + +   + +AL +   +   G  P   T+  L+  L     + +A ++L ++S  G +
Sbjct: 556 HGFARSGDMRRALEIFDMMRWSGCIPTVHTFNALILGLVEKCQMEKAVEILDEMSLAGIS 615

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P      ++   YA  G   KA +    L+ +  ++    +E ++      G +Q A  V
Sbjct: 616 PNEHTYTTIMHGYASLGDTGKAFEYFTKLKTEGLELDVYTYEALLKACCKSGRMQSALAV 675

Query: 560 HGLMEAQ 566
              M +Q
Sbjct: 676 TREMSSQ 682



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 66/338 (19%), Positives = 144/338 (42%), Gaps = 8/338 (2%)

Query: 248 LSEESFQTNVRDYSKLIDAHA----KENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS 303
           + EE     +  Y  ++D +     +E CL     +  ++ E G  P +++   L+++Y 
Sbjct: 399 MEEEGIDAPIDIYHTMMDGYTIIGNEEKCL----IVFDRLKECGFTPSVISYGCLINLYI 454

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363
           K G + +A E  + +   G + + K Y+ +I  +V         ++ + ++  G++    
Sbjct: 455 KIGKVSKALEVSKMMEVAGIKHNMKTYSMLINGFVRLKDWANAFAVFEDVVKDGLKPDVV 514

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
           +Y  ++R+F   G++  A +    M+ E  +PT  +   ++  + ++GD  +A   FD M
Sbjct: 515 LYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIHGFARSGDMRRALEIFDMM 574

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483
              G  P      ++I    +K  ++KA+ +L E+   G  P   TYT ++     L   
Sbjct: 575 RWSGCIPTVHTFNALILGLVEKCQMEKAVEILDEMSLAGISPNEHTYTTIMHGYASLGDT 634

Query: 484 NEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERI 543
            +A +   K+   G         +L     ++G  + AL     + ++K       +  +
Sbjct: 635 GKAFEYFTKLKTEGLELDVYTYEALLKACCKSGRMQSALAVTREMSSQKIPRNTFVYNIL 694

Query: 544 INGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
           I+G    G + +A  +   M+ +G         + I++
Sbjct: 695 IDGWARRGDVWEAAELMQQMKQEGVQPDIHTYTSFINA 732



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/318 (20%), Positives = 125/318 (39%), Gaps = 35/318 (11%)

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           ++V  Y++ G++  A+  FES+R+ G +P   VY S+I AY      +  +S V  M   
Sbjct: 273 LMVTYYARRGDMHHARGTFESMRARGIEPTSHVYTSLIHAYAVGRDMEEALSCVRKMKEE 332

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQ-----------ITNIMRIEEFQPTLESCTL--- 402
           GIE S   Y  L+  FA+  D   A             +  I+         ++C +   
Sbjct: 333 GIEMSLVTYSILVGGFAKIADAEAADHWFKEAKERHTTLNAIIYGNIIYAHCQACNMTQA 392

Query: 403 ---------------------LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441
                                +++ Y   G+ ++    FD +   G  P       +I  
Sbjct: 393 EALVREMEEEGIDAPIDIYHTMMDGYTIIGNEEKCLIVFDRLKECGFTPSVISYGCLINL 452

Query: 442 YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
           Y K   + KAL +   +E  G +    TY++L++   RL+    A  +   + + G  P 
Sbjct: 453 YIKIGKVSKALEVSKMMEVAGIKHNMKTYSMLINGFVRLKDWANAFAVFEDVVKDGLKPD 512

Query: 502 FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHG 561
             +  ++   +   G   +A++ +  ++ ++ +     F  II+G    G ++ A  +  
Sbjct: 513 VVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIHGFARSGDMRRALEIFD 572

Query: 562 LMEAQGFAASERLKVALI 579
           +M   G   +     ALI
Sbjct: 573 MMRWSGCIPTVHTFNALI 590



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 74/137 (54%), Gaps = 15/137 (10%)

Query: 241 FKVAELV--LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVL 298
           ++ AEL+  + +E  Q ++  Y+  I+A  K   ++ A + +++M   G+ P+I T T L
Sbjct: 705 WEAAELMQQMKQEGVQPDIHTYTSFINACCKAGDMQRATKTIQEMEVVGVKPNIKTYTTL 764

Query: 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
           +H +++A   ++A + F+ ++S G +PDK VY+ ++ + ++        S+ +  I SG+
Sbjct: 765 IHGWARASLPEKALKCFQEMKSAGLKPDKAVYHCLMTSLLSRA------SVAEEYIYSGV 818

Query: 359 ERSEEIYLALLRSFAQC 375
                  + + R   +C
Sbjct: 819 -------VGICREMIEC 828


>gi|255548994|ref|XP_002515553.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545497|gb|EEF47002.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 927

 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 98/394 (24%), Positives = 173/394 (43%), Gaps = 20/394 (5%)

Query: 201 LEKEEDPSPLLAEWKELLQ----PSRIDWINL-LDRLREQNTQLYFKVAELVLSEESFQT 255
           L KE   S     W+++L     P+++ + ++ L   R+ N  +   V   +L +   + 
Sbjct: 463 LCKEGKMSEATTLWQKMLDKGLAPTKVSYNSMILGHCRQGNLDMAASVFSDML-DCGLKP 521

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  YS L+D + K    E A  +  +M +  IVP   T  + ++   K G    A++  
Sbjct: 522 NVITYSILMDGYFKNGDTEYAFYVFDRMVDENIVPSDFTYNIKINGLCKVGRTSEAQDML 581

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           +     GF P    YNS++  ++  G     ++    M  SG+  +   Y  L+  F + 
Sbjct: 582 KKFVEKGFVPVCLTYNSIMDGFIKEGSVSSALTAYREMCESGVSPNVITYTTLINGFCKN 641

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
            +   A ++ N MR +  +  + +   L++ + +  D + A   F  ++  G  P+    
Sbjct: 642 NNTDLALKMRNEMRNKGLELDIAAYGALIDGFCKKQDIETASWLFSELLDGGLSPNSVIY 701

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL---GRLQLINEAEQLLGK 492
            S+I+ Y   N ++ ALNL   +  +G      TYT L+D L   GRL L   A  L  +
Sbjct: 702 NSLISGYRNLNNMEAALNLQKRMLGEGISCDLQTYTTLIDGLLKEGRLVL---ALDLYSE 758

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
           +S  G  P   I   L +     G  + A + L   E +++ + P+    I N L+AG F
Sbjct: 759 MSAKGIIPDIIIYTVLINGLCGKGQLENAQKILA--EMERDSITPN--VPIYNALIAGHF 814

Query: 553 ----LQDAQRVHGLMEAQGFAASERLKVALISSQ 582
               LQ+A R+H  M  +G   ++     LI+ +
Sbjct: 815 KAGNLQEAFRLHNEMLDKGLTPNDTTYDILINGK 848



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/325 (22%), Positives = 132/325 (40%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  Y+ L+    KE  + +A  + +KM + G+ P  V+   ++  + + GNLD A   F
Sbjct: 452 NIFTYNSLLSWLCKEGKMSEATTLWQKMLDKGLAPTKVSYNSMILGHCRQGNLDMAASVF 511

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G +P+   Y+ ++  Y   G  +    + D M+   I  S+  Y   +    + 
Sbjct: 512 SDMLDCGLKPNVITYSILMDGYFKNGDTEYAFYVFDRMVDENIVPSDFTYNIKINGLCKV 571

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G    A  +      + F P   +   +++ + + G    A + +  M   G  P+    
Sbjct: 572 GRTSEAQDMLKKFVEKGFVPVCLTYNSIMDGFIKEGSVSSALTAYREMCESGVSPNVITY 631

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I  + K N  D AL +  E+   G E   A Y  L+D   + Q I  A  L  ++ +
Sbjct: 632 TTLINGFCKNNNTDLALKMRNEMRNKGLELDIAAYGALIDGFCKKQDIETASWLFSELLD 691

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
            G +P   I  SL   Y      + AL     +  +        +  +I+GLL  G L  
Sbjct: 692 GGLSPNSVIYNSLISGYRNLNNMEAALNLQKRMLGEGISCDLQTYTTLIDGLLKEGRLVL 751

Query: 556 AQRVHGLMEAQGFAASERLKVALIS 580
           A  ++  M A+G      +   LI+
Sbjct: 752 ALDLYSEMSAKGIIPDIIIYTVLIN 776



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 134/317 (42%), Gaps = 5/317 (1%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           Q NV   + L+  + K++ L  A     KMNENG  P+ VT  VL+    K GN+ +A +
Sbjct: 346 QMNVVVATTLVKGYCKQDKLVSALEFFDKMNENGPSPNRVTYAVLIEWCCKNGNMAKAYD 405

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            +  +++    P   + NS+I  ++     +    L D  +   I      Y +LL    
Sbjct: 406 LYTQMKNKNICPTVFIVNSLIRGFLKVESREEASKLFDEAVACDIANIFT-YNSLLSWLC 464

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           + G +  A  +   M  +   PT  S   ++  + + G+ D A S F  M+  G KP+  
Sbjct: 465 KEGKMSEATTLWQKMLDKGLAPTKVSYNSMILGHCRQGNLDMAASVFSDMLDCGLKPNVI 524

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
             + ++  Y K    + A  +   +  +   P   TY + ++ L ++   +EA+ +L K 
Sbjct: 525 TYSILMDGYFKNGDTEYAFYVFDRMVDENIVPSDFTYNIKINGLCKVGRTSEAQDMLKKF 584

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGG 551
            E G  P      S+ D + + G    AL A  + E  +  + P+   +  +ING     
Sbjct: 585 VEKGFVPVCLTYNSIMDGFIKEGSVSSALTA--YREMCESGVSPNVITYTTLINGFCKNN 642

Query: 552 FLQDAQRVHGLMEAQGF 568
               A ++   M  +G 
Sbjct: 643 NTDLALKMRNEMRNKGL 659



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 114/256 (44%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F +++R Y+ L++++ K N L DA     ++ E+ IVP I     L+    K   +  A+
Sbjct: 170 FDSDIRIYNYLLNSYIKANKLNDAIGCFNRLVESDIVPWIKFLNFLLTALVKNDMIYEAR 229

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           E +E +   G   D    + M+ A +     +          + G++     Y  ++++F
Sbjct: 230 EVYEKMVLKGVHGDCFTVHIMMRANLKDNNEEEAKKFFLEAKSRGVKLDAAAYSIVIQAF 289

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            +  DV  A  +   MR + + P+  + T ++ A  + G+  +A    D M+  G + + 
Sbjct: 290 CKNLDVELACGLLKDMRDKGWVPSEGTFTSVIGACVKQGNMVEALRLKDEMVSCGVQMNV 349

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               +++  Y K++ L  AL    ++ ++G  P   TY VL++W  +   + +A  L  +
Sbjct: 350 VVATTLVKGYCKQDKLVSALEFFDKMNENGPSPNRVTYAVLIEWCCKNGNMAKAYDLYTQ 409

Query: 493 ISELGEAPPFKIQVSL 508
           +      P   I  SL
Sbjct: 410 MKNKNICPTVFIVNSL 425



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 78/167 (46%), Gaps = 7/167 (4%)

Query: 218 LQPSRIDWINLLDRLRE-QNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L P+ + + +L+   R   N +    + + +L E     +++ Y+ LID   KE  L  A
Sbjct: 694 LSPNSVIYNSLISGYRNLNNMEAALNLQKRMLGE-GISCDLQTYTTLIDGLLKEGRLVLA 752

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
             +  +M+  GI+PDI+  TVL++     G L+ A++    +      P+  +YN++I  
Sbjct: 753 LDLYSEMSAKGIIPDIIIYTVLINGLCGKGQLENAQKILAEMERDSITPNVPIYNALIAG 812

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQ 383
           +  AG  +    L + M+  G+  ++  Y  L+      G ++G   
Sbjct: 813 HFKAGNLQEAFRLHNEMLDKGLTPNDTTYDILIN-----GKIKGGNS 854



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 49/238 (20%), Positives = 103/238 (43%), Gaps = 1/238 (0%)

Query: 263 LIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG 322
           ++ A+ K+N  E+A++   +    G+  D    ++++  + K  +++ A    + +R  G
Sbjct: 250 MMRANLKDNNEEEAKKFFLEAKSRGVKLDAAAYSIVIQAFCKNLDVELACGLLKDMRDKG 309

Query: 323 FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAG 382
           + P +  + S+I A V  G     + L D M++ G++ +  +   L++ + +   +  A 
Sbjct: 310 WVPSEGTFTSVIGACVKQGNMVEALRLKDEMVSCGVQMNVVVATTLVKGYCKQDKLVSAL 369

Query: 383 QITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAY 442
           +  + M      P   +  +L+E   + G+  +A   +  M      P      S+I  +
Sbjct: 370 EFFDKMNENGPSPNRVTYAVLIEWCCKNGNMAKAYDLYTQMKNKNICPTVFIVNSLIRGF 429

Query: 443 GKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
            K    ++A  L  E           TY  L+ WL +   ++EA  L  K+ + G AP
Sbjct: 430 LKVESREEASKLFDEAVACDI-ANIFTYNSLLSWLCKEGKMSEATTLWQKMLDKGLAP 486



 Score = 45.8 bits (107), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 41/86 (47%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI+    +  LE+A++IL +M  + I P++     L+  + KAGNL  A      + 
Sbjct: 771 YTVLINGLCGKGQLENAQKILAEMERDSITPNVPIYNALIAGHFKAGNLQEAFRLHNEML 830

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKL 345
             G  P+   Y+ +I   +  G   L
Sbjct: 831 DKGLTPNDTTYDILINGKIKGGNSAL 856


>gi|110738150|dbj|BAF01006.1| hypothetical protein [Arabidopsis thaliana]
          Length = 642

 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 142/335 (42%), Gaps = 38/335 (11%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F   V   + LI +  K   +E+   + +KM ENGI P + T   L++    A  +D A+
Sbjct: 165 FPMTVSAANALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAE 224

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
             FE + S   +PD   YN+MI  Y  AGQ +  M  +  M T G E  +  Y+ ++++ 
Sbjct: 225 RVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQAC 284

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
               D      +   M  +  Q    + +L++    + G  ++  + F+ MIR G KP+ 
Sbjct: 285 YADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNV 344

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTV-------------------- 472
                +I  Y K   ++ A+ LL  +  +GF+P   TY+V                    
Sbjct: 345 AIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHT 404

Query: 473 ---------------LVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI 517
                          L+D LG+   ++EAE+L  ++SE G         +L D + +   
Sbjct: 405 CRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTK--- 461

Query: 518 EKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
            +K  +A+   +  +E+ G D        LL+G F
Sbjct: 462 HRKVDEAIALFKRMEEEEGCDQTVYTYTILLSGMF 496



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 130/286 (45%), Gaps = 9/286 (3%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ LID +AK   +EDA R+L +M + G  PD+VT +V+V+   K G ++ A + F
Sbjct: 343 NVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYF 402

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
            + R  G   +   Y+S+I     AG+      L + M   G  R    Y AL+ +F + 
Sbjct: 403 HTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKH 462

Query: 376 GDVRGAGQITNIMRIEE-FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
             V  A  +   M  EE    T+ + T+L+    +    ++A   +D MI  G  P   C
Sbjct: 463 RKVDEAIALFKRMEEEEGCDQTVYTYTILLSGMFKEHRNEEALKLWDMMIDKGITPTAAC 522

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
             ++         + +A  +L EL   G     A    +++ L +   I EA +L   I+
Sbjct: 523 FRALSTGLCLSGKVARACKILDELAPMGVILDAACED-MINTLCKAGRIKEACKLADGIT 581

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK----KEQMG 536
           E G   P +I+  + +   + G   KA  A+  + +K     E+MG
Sbjct: 582 ERGREVPGRIRTVMINALRKVG---KADLAMKLMHSKIGIGYERMG 624



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/284 (20%), Positives = 117/284 (41%), Gaps = 4/284 (1%)

Query: 298 LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG 357
           LV + + A ++DR +     ++   F       N++I ++   G  +  + +   M  +G
Sbjct: 140 LVDVLALAKDVDRIRFVSSEIKKFEFPMTVSAANALIKSFGKLGMVEELLWVWRKMKENG 199

Query: 358 IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
           IE +   Y  L+        V  A ++  +M     +P + +   +++ Y +AG   +A 
Sbjct: 200 IEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAM 259

Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
                M   GH+ D     +MI A    +     + L  E+++ G +  P  +++++  L
Sbjct: 260 EKLRDMETRGHEADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGL 319

Query: 478 GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP 537
            +   +NE   +   +   G  P   I   L D YA++G  + A++ L       E   P
Sbjct: 320 CKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLH--RMIDEGFKP 377

Query: 538 D--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
           D   +  ++NGL   G +++A          G A +     +LI
Sbjct: 378 DVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLI 421


>gi|255660838|gb|ACU25588.1| pentatricopeptide repeat-containing protein [Neosparton
           ephedroides]
          Length = 418

 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 121/262 (46%), Gaps = 8/262 (3%)

Query: 211 LAEWKELLQPSRIDWINLLD---RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAH 267
           + +W   L+PS + +  L++   RL + +     K A   +     Q +V  YS LI+  
Sbjct: 162 ITKWG--LRPSVVSFNTLMNGYIRLGDLDEGFRLKSA---MHGSGIQPDVYTYSVLINGL 216

Query: 268 AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK 327
            KE+ + DA  +  +M  NG+VP+ VT T L+  + K G++D A EA++ +   GF PD 
Sbjct: 217 CKESKMNDANELFDEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMEAYKEMLRQGFSPDL 276

Query: 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNI 387
             YN++I      G  K    L+D M   G++  +  Y  L+    + GD+  A +    
Sbjct: 277 ITYNTLIYGLCKEGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFKYKKR 336

Query: 388 MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447
           M  E  +    + T L+    + G    A      M+ +G KPD+     +I  + KK  
Sbjct: 337 MIKENIRLDDVAYTALISGLCREGQSVGAEKMLREMLSVGLKPDNGTYTMIINEFCKKGD 396

Query: 448 LDKALNLLLELEKDGFEPGPAT 469
           +     LL E+++DG  P   T
Sbjct: 397 VKMGSKLLKEMQRDGHVPCVVT 418



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/298 (21%), Positives = 135/298 (45%), Gaps = 18/298 (6%)

Query: 214 WKELLQ---PSRIDWINLLDRLREQNTQLYFKVAELVLSEESF--------QTNVRDYSK 262
           +KE+L+   P+ + + N+L          + K  E+ L++  F        + +V  ++ 
Sbjct: 124 YKEILECGYPASLYFFNIL-------MHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNT 176

Query: 263 LIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG 322
           L++ + +   L++  R+   M+ +GI PD+ T +VL++   K   ++ A E F+ +  +G
Sbjct: 177 LMNGYIRLGDLDEGFRLKSAMHGSGIQPDVYTYSVLINGLCKESKMNDANELFDEMIGNG 236

Query: 323 FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAG 382
             P+   + ++I  +   G   L M     M+  G       Y  L+    + GD++ A 
Sbjct: 237 LVPNGVTFTTLIDGHCKTGSIDLAMEAYKEMLRQGFSPDLITYNTLIYGLCKEGDLKQAQ 296

Query: 383 QITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAY 442
            + + M ++  +P   + T L++   + GD + A      MI+   + DD    ++I+  
Sbjct: 297 DLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFKYKKRMIKENIRLDDVAYTALISGL 356

Query: 443 GKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
            ++     A  +L E+   G +P   TYT++++   +   +    +LL ++   G  P
Sbjct: 357 CREGQSVGAEKMLREMLSVGLKPDNGTYTMIINEFCKKGDVKMGSKLLKEMQRDGHVP 414



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 95/226 (42%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E  F        K+++   K    +      K++ E G    +    +L+H + K G + 
Sbjct: 94  EHKFWVPFDTCRKVLEHFMKLKYFKSVWGFYKEILECGYPASLYFFNILMHRFCKEGEMR 153

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A+  F+ +   G +P    +N+++  Y+  G    G  L   M  SGI+     Y  L+
Sbjct: 154 LAQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHGSGIQPDVYTYSVLI 213

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               +   +  A ++ + M      P   + T L++ + + G  D A   +  M+R G  
Sbjct: 214 NGLCKESKMNDANELFDEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMEAYKEMLRQGFS 273

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
           PD     ++I    K+  L +A +L+ E+   G +P   TYT L+D
Sbjct: 274 PDLITYNTLIYGLCKEGDLKQAQDLIDEMSMKGLKPDKITYTTLID 319



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 61/276 (22%), Positives = 117/276 (42%), Gaps = 3/276 (1%)

Query: 243 VAELVLSEESFQ-TNVRDYSKLIDAHAKENCLEDAERILKKMNENGI-VPDIVTSTVLVH 300
           V E +L  +  Q ++V  +S LI A+ +   L DA    +   E+   VP      VL H
Sbjct: 51  VFEAILEAKGAQRSDVYVFSGLITAYLESGFLHDALECFRLTREHKFWVPFDTCRKVLEH 110

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
            + K          ++ +   G+      +N ++  +   G+ +L  S+ D +   G+  
Sbjct: 111 -FMKLKYFKSVWGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRP 169

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
           S   +  L+  + + GD+    ++ + M     QP + + ++L+    +    + A   F
Sbjct: 170 SVVSFNTLMNGYIRLGDLDEGFRLKSAMHGSGIQPDVYTYSVLINGLCKESKMNDANELF 229

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
           D MI  G  P+     ++I  + K   +D A+    E+ + GF P   TY  L+  L + 
Sbjct: 230 DEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMEAYKEMLRQGFSPDLITYNTLIYGLCKE 289

Query: 481 QLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
             + +A+ L+ ++S  G  P      +L D   + G
Sbjct: 290 GDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEG 325



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 62/292 (21%), Positives = 117/292 (40%), Gaps = 4/292 (1%)

Query: 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV 350
           D+   + L+  Y ++G L  A E F   R H F         ++  ++     K      
Sbjct: 65  DVYVFSGLITAYLESGFLHDALECFRLTREHKFWVPFDTCRKVLEHFMKLKYFKSVWGFY 124

Query: 351 DMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410
             ++  G   S   +  L+  F + G++R A  + + +     +P++ S   L+  Y + 
Sbjct: 125 KEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRL 184

Query: 411 GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATY 470
           GD D+       M   G +PD    + +I    K++ ++ A  L  E+  +G  P   T+
Sbjct: 185 GDLDEGFRLKSAMHGSGIQPDVYTYSVLINGLCKESKMNDANELFDEMIGNGLVPNGVTF 244

Query: 471 TVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEA 530
           T L+D   +   I+ A +   ++   G +P      +L     + G  K+A   +   E 
Sbjct: 245 TTLIDGHCKTGSIDLAMEAYKEMLRQGFSPDLITYNTLIYGLCKEGDLKQAQDLID--EM 302

Query: 531 KKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
             + + PD   +  +I+G    G L+ A +    M  +     +    ALIS
Sbjct: 303 SMKGLKPDKITYTTLIDGSCKEGDLETAFKYKKRMIKENIRLDDVAYTALIS 354


>gi|297839237|ref|XP_002887500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333341|gb|EFH63759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 989

 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 82/330 (24%), Positives = 155/330 (46%), Gaps = 12/330 (3%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++ +I        L +AE +LKKM E GI PD  T  +L+ +++ AG+++ A + + ++R
Sbjct: 340 FNTMIHTCGTHGHLSEAESLLKKMEEKGISPDTKTYNILLSLHADAGDIEAALKYYRNIR 399

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  PD   + +++             +++  M  + I   E     +++ +   G V 
Sbjct: 400 KVGLFPDTVTHRAVLHILCQRKMVAEAEAVMAEMDRNSIRIDEHSVPVIMQMYVNEGLV- 458

Query: 380 GAGQITNIMRIEEFQPTLESCTL--LVEAYGQAGDPDQARSNFDYMIR--LGHKPDDRCT 435
             GQ   +    +    L S TL  +++ Y + G   +A + F Y  R   G + D    
Sbjct: 459 --GQAKALFERFQLDCVLSSTTLAAVMDVYAEKGLWVEAETVF-YGKRNMTGQRNDVLEY 515

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             MI AYGK  L +KAL++   ++  G  P   TY  L+  L  + L+++A+++L ++ +
Sbjct: 516 NVMIKAYGKAKLHEKALSIFKGMKNQGTWPDECTYNSLIQMLAGVDLVDDAQRILAEMLD 575

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFL 553
            G  P  K   +L   Y R G+   A+    +   KK  + P++  +  +ING    G +
Sbjct: 576 SGCKPGCKTYAALIASYVRLGLLSDAVDL--YEAMKKTGVKPNEVVYGSLINGFAESGMV 633

Query: 554 QDAQRVHGLMEAQGFAASERLKVALISSQT 583
           ++A +   LME  G  ++  +  +LI + +
Sbjct: 634 EEAIQYFKLMEEHGVQSNHIVLTSLIKAYS 663



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 99/209 (47%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           + +V +Y+ +I A+ K    E A  I K M   G  PD  T   L+ M +    +D A+ 
Sbjct: 509 RNDVLEYNVMIKAYGKAKLHEKALSIFKGMKNQGTWPDECTYNSLIQMLAGVDLVDDAQR 568

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
               +   G +P  K Y ++I +YV  G     + L + M  +G++ +E +Y +L+  FA
Sbjct: 569 ILAEMLDSGCKPGCKTYAALIASYVRLGLLSDAVDLYEAMKKTGVKPNEVVYGSLINGFA 628

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           + G V  A Q   +M     Q      T L++AY + G  ++AR  +D M   G  PD  
Sbjct: 629 ESGMVEEAIQYFKLMEEHGVQSNHIVLTSLIKAYSKVGCLEEARRVYDKMKDSGGGPDVA 688

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDG 462
            + SM++      ++ +A ++  +L + G
Sbjct: 689 ASNSMLSLCADLGIVSEAESIFNDLREKG 717



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 89/392 (22%), Positives = 169/392 (43%), Gaps = 10/392 (2%)

Query: 181 PEEPKPITGKCKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLY 240
           P +P+ +T     + D      +  D + L +E  +   P  ID +     +    T  +
Sbjct: 296 PRKPR-LTSTFNTLIDLYGKAGRLNDAANLFSEMLKSGVP--IDTVTFNTMIHTCGTHGH 352

Query: 241 FKVAELVLS---EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTV 297
              AE +L    E+    + + Y+ L+  HA    +E A +  + + + G+ PD VT   
Sbjct: 353 LSEAESLLKKMEEKGISPDTKTYNILLSLHADAGDIEAALKYYRNIRKVGLFPDTVTHRA 412

Query: 298 LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG 357
           ++H+  +   +  A+     +  +  + D+     ++  YVN G      +L +      
Sbjct: 413 VLHILCQRKMVAEAEAVMAEMDRNSIRIDEHSVPVIMQMYVNEGLVGQAKALFERFQLDC 472

Query: 358 IERSEEIYLALLRSFAQCGDVRGAGQITNIMR--IEEFQPTLESCTLLVEAYGQAGDPDQ 415
           +  S  +  A++  +A+ G    A  +    R    +    LE   ++++AYG+A   ++
Sbjct: 473 VLSSTTL-AAVMDVYAEKGLWVEAETVFYGKRNMTGQRNDVLEY-NVMIKAYGKAKLHEK 530

Query: 416 ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
           A S F  M   G  PD+    S+I      +L+D A  +L E+   G +PG  TY  L+ 
Sbjct: 531 ALSIFKGMKNQGTWPDECTYNSLIQMLAGVDLVDDAQRILAEMLDSGCKPGCKTYAALIA 590

Query: 476 WLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQM 535
              RL L+++A  L   + + G  P   +  SL + +A +G+ ++A+Q    +E    Q 
Sbjct: 591 SYVRLGLLSDAVDLYEAMKKTGVKPNEVVYGSLINGFAESGMVEEAIQYFKLMEEHGVQS 650

Query: 536 GPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
                  +I      G L++A+RV+  M+  G
Sbjct: 651 NHIVLTSLIKAYSKVGCLEEARRVYDKMKDSG 682



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 112/245 (45%), Gaps = 15/245 (6%)

Query: 261 SKLIDAHAKENCLEDAERILK-KMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           + ++D +A++    +AE +   K N  G   D++   V++  Y KA   ++A   F+ ++
Sbjct: 480 AAVMDVYAEKGLWVEAETVFYGKRNMTGQRNDVLEYNVMIKAYGKAKLHEKALSIFKGMK 539

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVD-------MMITSGIERSEEIYLALLRSF 372
           + G  PD+  YNS+I       Q   G+ LVD        M+ SG +   + Y AL+ S+
Sbjct: 540 NQGTWPDECTYNSLI-------QMLAGVDLVDDAQRILAEMLDSGCKPGCKTYAALIASY 592

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + G +  A  +   M+    +P       L+  + ++G  ++A   F  M   G + + 
Sbjct: 593 VRLGLLSDAVDLYEAMKKTGVKPNEVVYGSLINGFAESGMVEEAIQYFKLMEEHGVQSNH 652

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               S+I AY K   L++A  +  +++  G  P  A    ++     L +++EAE +   
Sbjct: 653 IVLTSLIKAYSKVGCLEEARRVYDKMKDSGGGPDVAASNSMLSLCADLGIVSEAESIFND 712

Query: 493 ISELG 497
           + E G
Sbjct: 713 LREKG 717



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 120/282 (42%), Gaps = 14/282 (4%)

Query: 240 YFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLV 299
           YFK+ E    E   Q+N    + LI A++K  CLE+A R+  KM ++G  PD+  S  ++
Sbjct: 639 YFKLME----EHGVQSNHIVLTSLIKAYSKVGCLEEARRVYDKMKDSGGGPDVAASNSML 694

Query: 300 HMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
            + +  G +  A+  F  LR  G   D   + +M+  Y   G     + + + M  SG+ 
Sbjct: 695 SLCADLGIVSEAESIFNDLREKG-TCDVISFATMMYLYKGMGMLDEAIEVAEEMRESGLL 753

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL--LVEAYGQAGDPDQAR 417
           R    +  +L  +A  G +R   ++ + M +E  +  L+  T   L     + G P +A 
Sbjct: 754 RDCTSFNQVLACYAADGQLRECCELFHEMLVER-KLLLDWGTFKTLFTLLKKGGVPSEAV 812

Query: 418 SNFDYMIRLGHKP--DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
           +          KP      TA++ +A G   L   AL    EL +D        Y  ++ 
Sbjct: 813 AQLQTAYNEA-KPLATPAITATLFSAMG---LYAYALESCQELTRDEIPREHYAYNAVIY 868

Query: 476 WLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI 517
                  I+ A +   ++ E G  P    Q  L  +Y +AG+
Sbjct: 869 TYSASGDIDMALKTYMRMQEKGLEPDVVTQAYLVGIYGKAGM 910



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 127/308 (41%), Gaps = 34/308 (11%)

Query: 241 FKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
            +V     S +S+  NV  Y+ ++ A  +    ++      +M  NG++P   T  +LV 
Sbjct: 123 LRVFRFFQSHQSYVPNVIHYNIVLRALGRAGKWDELRLCWIEMAHNGVLPTNNTYGMLVD 182

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMI---TSG 357
           +Y KAG +  A    + +      PD+    +++  + N+G+        D       +G
Sbjct: 183 VYGKAGLVKEALLWIKHMGQRMHFPDEVTMATVVRVFKNSGE----FDRADRFFKGWCAG 238

Query: 358 IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ-----PTLESCTLLVEAYGQAGD 412
               +++ L  +  F + G  +    +   + +E F+     P  +S   L  A G    
Sbjct: 239 KVNLDDLDLDSIDDFPKNGSAQSPVNLKQFLSMELFKVGARNPIEKS---LHFASGSDSS 295

Query: 413 PDQAR--SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATY 470
           P + R  S F+ +I L               YGK   L+ A NL  E+ K G      T+
Sbjct: 296 PRKPRLTSTFNTLIDL---------------YGKAGRLNDAANLFSEMLKSGVPIDTVTF 340

Query: 471 TVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEA 530
             ++   G    ++EAE LL K+ E G +P  K    L  ++A AG  + AL+   +   
Sbjct: 341 NTMIHTCGTHGHLSEAESLLKKMEEKGISPDTKTYNILLSLHADAGDIEAALKY--YRNI 398

Query: 531 KKEQMGPD 538
           +K  + PD
Sbjct: 399 RKVGLFPD 406



 Score = 45.8 bits (107), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 46/87 (52%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +I  ++    ++ A +   +M E G+ PD+VT   LV +Y KAG ++  K     L 
Sbjct: 863 YNAVIYTYSASGDIDMALKTYMRMQEKGLEPDVVTQAYLVGIYGKAGMVEGVKRVHSRLT 922

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLG 346
               +P++ ++ ++  AYV+A +  L 
Sbjct: 923 FGELEPNQSLFKAVRDAYVSANRQDLA 949


>gi|449469290|ref|XP_004152354.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Cucumis sativus]
 gi|449484425|ref|XP_004156880.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Cucumis sativus]
          Length = 834

 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 79/344 (22%), Positives = 142/344 (41%), Gaps = 3/344 (0%)

Query: 241 FKVAELVLSE---ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTV 297
           F+  +L+L E        NV+ Y+ +IDA  K      A+  LK+M+EN   PD+VT   
Sbjct: 294 FEAIDLLLLEMKDRGLSVNVQMYNNIIDARYKLGFDIKAKDTLKEMSENCCEPDLVTYNT 353

Query: 298 LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG 357
           L++ +   G ++ A++  E     G  P+K  Y  ++  Y   G+       +  M TSG
Sbjct: 354 LINHFCSRGEVEEAEKLLEQTIRRGLAPNKLTYTPLVHGYCKQGEYTKATDYLIEMSTSG 413

Query: 358 IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
           +E     Y AL+      G+V  A  I + M      P      +L+    + G    A+
Sbjct: 414 LEVDMISYGALIHGLVVAGEVDTALTIRDRMMNRGILPDANIYNVLMNGLFKKGKLSMAK 473

Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
                M+     PD    A+++  + +   LD+A  L   + + G +PG   Y V++   
Sbjct: 474 VMLTEMLDQNIAPDAFVYATLVDGFIRHGNLDEAKKLFQLIIEKGLDPGVVGYNVMIKGF 533

Query: 478 GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP 537
            +  +++ A   + K+      P      ++ D Y +       L+  G +  +  +   
Sbjct: 534 SKSGMMDNAILCIDKMRRAHHVPDIFTFSTIIDGYVKQHNMNAVLKIFGLMVKQNCKPNV 593

Query: 538 DDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
             +  +ING    G  + A+++  +M + G   S      LI S
Sbjct: 594 VTYTSLINGYCRKGETKMAEKLFSMMRSHGLKPSVVTYSILIGS 637



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 138/310 (44%), Gaps = 5/310 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +SE   + ++  Y+ LI+       +E+AE++L++    G+ P+ +T T LVH Y K G 
Sbjct: 339 MSENCCEPDLVTYNTLINHFCSRGEVEEAEKLLEQTIRRGLAPNKLTYTPLVHGYCKQGE 398

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
             +A +    + + G + D   Y ++I   V AG+    +++ D M+  GI     IY  
Sbjct: 399 YTKATDYLIEMSTSGLEVDMISYGALIHGLVVAGEVDTALTIRDRMMNRGILPDANIYNV 458

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    + G +  A  +   M  +   P       LV+ + + G+ D+A+  F  +I  G
Sbjct: 459 LMNGLFKKGKLSMAKVMLTEMLDQNIAPDAFVYATLVDGFIRHGNLDEAKKLFQLIIEKG 518

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P       MI  + K  ++D A+  + ++ +    P   T++ ++D   +   +N   
Sbjct: 519 LDPGVVGYNVMIKGFSKSGMMDNAILCIDKMRRAHHVPDIFTFSTIIDGYVKQHNMNAVL 578

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
           ++ G + +    P      SL + Y R G E K  + L F   +   + P     +   +
Sbjct: 579 KIFGLMVKQNCKPNVVTYTSLINGYCRKG-ETKMAEKL-FSMMRSHGLKP---SVVTYSI 633

Query: 548 LAGGFLQDAQ 557
           L G F ++A+
Sbjct: 634 LIGSFCKEAK 643



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 77/362 (21%), Positives = 144/362 (39%), Gaps = 39/362 (10%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD------ 309
           N+  Y+ LID + K+  +E A ++ KK+   G +P + T   LV+ + K G  +      
Sbjct: 242 NIVFYNTLIDGYCKKGEVESAYKLFKKLKMKGFIPTLQTFGSLVNGFCKMGMFEAIDLLL 301

Query: 310 -----------------------------RAKEAFESLRSHGFQPDKKVYNSMIMAYVNA 340
                                        +AK+  + +  +  +PD   YN++I  + + 
Sbjct: 302 LEMKDRGLSVNVQMYNNIIDARYKLGFDIKAKDTLKEMSENCCEPDLVTYNTLINHFCSR 361

Query: 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
           G+ +    L++  I  G+  ++  Y  L+  + + G+   A      M     +  + S 
Sbjct: 362 GEVEEAEKLLEQTIRRGLAPNKLTYTPLVHGYCKQGEYTKATDYLIEMSTSGLEVDMISY 421

Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
             L+     AG+ D A +  D M+  G  PD      ++    KK  L  A  +L E+  
Sbjct: 422 GALIHGLVVAGEVDTALTIRDRMMNRGILPDANIYNVLMNGLFKKGKLSMAKVMLTEMLD 481

Query: 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKK 520
               P    Y  LVD   R   ++EA++L   I E G  P       +   ++++G+   
Sbjct: 482 QNIAPDAFVYATLVDGFIRHGNLDEAKKLFQLIIEKGLDPGVVGYNVMIKGFSKSGMMDN 541

Query: 521 ALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVAL 578
           A+  +   + ++    PD   F  II+G +    +    ++ GLM  Q    +     +L
Sbjct: 542 AILCID--KMRRAHHVPDIFTFSTIIDGYVKQHNMNAVLKIFGLMVKQNCKPNVVTYTSL 599

Query: 579 IS 580
           I+
Sbjct: 600 IN 601



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/252 (19%), Positives = 117/252 (46%), Gaps = 14/252 (5%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+D   +   L++A+++ + + E G+ P +V   V++  +SK+G +D A    + +R
Sbjct: 491 YATLVDGFIRHGNLDEAKKLFQLIIEKGLDPGVVGYNVMIKGFSKSGMMDNAILCIDKMR 550

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
                PD   ++++I  YV        + +  +M+    + +   Y +L+  + + G+ +
Sbjct: 551 RAHHVPDIFTFSTIIDGYVKQHNMNAVLKIFGLMVKQNCKPNVVTYTSLINGYCRKGETK 610

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++ ++MR    +P++ + ++L+ ++ +     +A S F+ M+     P+D     ++
Sbjct: 611 MAEKLFSMMRSHGLKPSVVTYSILIGSFCKEAKLGKAVSYFELMLINKCTPNDAAFHYLV 670

Query: 440 AAY--GKKNLLDKALNLLLELEK------------DGFEPGPATYTVLVDWLGRLQLINE 485
             +   K   + +  N L E  +            DG+    A Y  ++  L + +++  
Sbjct: 671 NGFTNTKATAVSREPNNLHENSRSMFEDFFSRMIGDGWTQKAAAYNCILICLCQQRMVKT 730

Query: 486 AEQLLGKISELG 497
           A QL  K+   G
Sbjct: 731 ALQLRNKMLAFG 742



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 78/352 (22%), Positives = 153/352 (43%), Gaps = 17/352 (4%)

Query: 226 INLLDRLREQNT--QLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCL----EDAERI 279
           +NLL + R   T  QLY    E++  +      V +Y+  I    K  CL    ED  ++
Sbjct: 176 LNLLVKHRRIETAHQLY---DEMIDRDNGDDICVDNYTTSI--MVKGLCLKGRIEDGIKL 230

Query: 280 LKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339
           ++     G VP+IV    L+  Y K G ++ A + F+ L+  GF P  + + S++  +  
Sbjct: 231 IESRWGKGCVPNIVFYNTLIDGYCKKGEVESAYKLFKKLKMKGFIPTLQTFGSLVNGFCK 290

Query: 340 AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG-DVRGAGQITNIMRIEEFQPTLE 398
            G  +    L+  M   G+  + ++Y  ++ +  + G D++    +   M     +P L 
Sbjct: 291 MGMFEAIDLLLLEMKDRGLSVNVQMYNNIIDARYKLGFDIKAKDTLKE-MSENCCEPDLV 349

Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
           +   L+  +   G+ ++A    +  IR G  P+      ++  Y K+    KA + L+E+
Sbjct: 350 TYNTLINHFCSRGEVEEAEKLLEQTIRRGLAPNKLTYTPLVHGYCKQGEYTKATDYLIEM 409

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
              G E    +Y  L+  L     ++ A  +  ++   G  P   I   L +   + G  
Sbjct: 410 STSGLEVDMISYGALIHGLVVAGEVDTALTIRDRMMNRGILPDANIYNVLMNGLFKKG-- 467

Query: 519 KKALQALGFLEAKKEQMGPDDF--ERIINGLLAGGFLQDAQRVHGLMEAQGF 568
           K ++  +   E   + + PD F    +++G +  G L +A+++  L+  +G 
Sbjct: 468 KLSMAKVMLTEMLDQNIAPDAFVYATLVDGFIRHGNLDEAKKLFQLIIEKGL 519


>gi|22128591|gb|AAM52341.1| fertility restorer-like protein [Petunia x hybrida]
          Length = 592

 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 83/365 (22%), Positives = 158/365 (43%), Gaps = 36/365 (9%)

Query: 185 KPITGKCKLITDKILSLEKEEDPSPLLAEWKE-LLQPSRIDWINLLDRLREQNTQLYFKV 243
           KP T    ++ D        +  + LL E K+  + P    +  L+D L + +     + 
Sbjct: 210 KPNTCIYSIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRT 269

Query: 244 AELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS 303
             L +   +   NV  ++ +ID   KE  +EDAE I++ M E G+ PD++T  +++  Y 
Sbjct: 270 LFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYG 329

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363
             G +DRA+E F+S+ +   +P+   YN +I  Y  A Q K+  +               
Sbjct: 330 LRGQVDRAREIFDSMINKSIEPNIISYNILINGY--ARQKKIDEA--------------- 372

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
             + + R  +Q G                 +P++ +C +L+    + G    A++ FD M
Sbjct: 373 --MQVCREISQKG----------------LKPSIVTCNVLLHGLFELGRTKSAQNFFDEM 414

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483
           +  GH PD     +++  Y K  L+++A++   +LE+   +     YT ++D L +   +
Sbjct: 415 LSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKL 474

Query: 484 NEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERI 543
           ++A     K+  +G  P      ++   Y + G+  +A   L  +E          +  I
Sbjct: 475 DKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVI 534

Query: 544 INGLL 548
           + G L
Sbjct: 535 VRGFL 539



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/343 (21%), Positives = 143/343 (41%), Gaps = 37/343 (10%)

Query: 216 ELLQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
            + +P+ + +  +++ L ++ +TQ  F +  L + + S + N   YS +IDA  K+  L+
Sbjct: 172 NICEPNEVMYGTVMNGLCKKGHTQKAFDLLRL-MEQGSTKPNTCIYSIVIDAFCKDGMLD 230

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
            A  +L +M +  I PDI T + L+    K    +  +  F  +      P+   +NS+I
Sbjct: 231 GATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVI 290

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
                 G+ +    ++  MI  G++                                   
Sbjct: 291 DGLCKEGKVEDAEEIMRYMIEKGVD----------------------------------- 315

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P + +  ++++ YG  G  D+AR  FD MI    +P+      +I  Y ++  +D+A+ +
Sbjct: 316 PDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPNIISYNILINGYARQKKIDEAMQV 375

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
             E+ + G +P   T  VL+  L  L     A+    ++   G  P      +L   Y +
Sbjct: 376 CREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFK 435

Query: 515 AGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQ 557
            G+ ++A+     LE ++E      +  +I+GL   G L  A 
Sbjct: 436 NGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAH 478



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 112/245 (45%), Gaps = 35/245 (14%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
            +S + N+  Y+ LI+ +A++  +++A ++ +++++ G+ P IVT  VL+H   + G   
Sbjct: 346 NKSIEPNIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTK 405

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A+  F+ + S G  PD   + +++  Y   G  +  MS         +ER  E      
Sbjct: 406 SAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHF-----HKLERRRE------ 454

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
                                      ++  T +++   + G  D+A + F+ +  +G  
Sbjct: 455 ------------------------DTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLH 490

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     +MI+ Y ++ LLD+A ++L ++E +G      TY V+V    R   ++E +  
Sbjct: 491 PDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVIVRGFLRSNKVSEMKAF 550

Query: 490 LGKIS 494
           L +I+
Sbjct: 551 LEEIA 555



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 72/323 (22%), Positives = 130/323 (40%), Gaps = 18/323 (5%)

Query: 236 NTQLYFKVAELVLSEESFQTNVRDYS---KLIDAHAKEN--CLEDAERILKKMNENGIVP 290
           N   +F      ++   + TN R  S       ++  EN  CL+DA  + ++M     +P
Sbjct: 11  NGNPFFSFFAYSIAPRHYSTNTRSISVKGNFGVSNEFENVKCLDDAFSLFRQMVRTKPLP 70

Query: 291 DIVTST----VLVHM--YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPK 344
            +V+ +     LVHM  YS   +L R       +  H F     V +  +M      +  
Sbjct: 71  SVVSFSKLLKALVHMKHYSSVVSLFREIHKLR-IPVHEFILSIVVNSCCLMH-----RTD 124

Query: 345 LGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQI-TNIMRIEEFQPTLESCTLL 403
           LG S++ +    GI  ++ I+  LLR       V+ A  +   ++R    +P       +
Sbjct: 125 LGFSVLAIHFKKGIPFNQVIFNTLLRGLFAENKVKDAVHLFKKLVRENICEPNEVMYGTV 184

Query: 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGF 463
           +    + G   +A      M +   KP+    + +I A+ K  +LD A +LL E+++   
Sbjct: 185 MNGLCKKGHTQKAFDLLRLMEQGSTKPNTCIYSIVIDAFCKDGMLDGATSLLNEMKQKSI 244

Query: 464 EPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
            P   TY+ L+D L +L        L  ++  L   P      S+ D   + G  + A +
Sbjct: 245 PPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEE 304

Query: 524 ALGFLEAKKEQMGPDDFERIING 546
            + ++  K        +  II+G
Sbjct: 305 IMRYMIEKGVDPDVITYNMIIDG 327



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/250 (19%), Positives = 107/250 (42%)

Query: 318 LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
           +R +  +P++ +Y +++      G  +    L+ +M     + +  IY  ++ +F + G 
Sbjct: 169 VRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTCIYSIVIDAFCKDGM 228

Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
           + GA  + N M+ +   P + + + L++A  +    +  R+ F  MI L   P+     S
Sbjct: 229 LDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNS 288

Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           +I    K+  ++ A  ++  + + G +P   TY +++D  G    ++ A ++   +    
Sbjct: 289 VIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKS 348

Query: 498 EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQ 557
             P       L + YAR     +A+Q    +  K  +        +++GL   G  + AQ
Sbjct: 349 IEPNIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQ 408

Query: 558 RVHGLMEAQG 567
                M + G
Sbjct: 409 NFFDEMLSAG 418


>gi|15224671|ref|NP_180698.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
 gi|75206083|sp|Q9SIC9.1|PP178_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g31400, chloroplastic; Flags: Precursor
 gi|4589961|gb|AAD26479.1| unknown protein [Arabidopsis thaliana]
 gi|330253448|gb|AEC08542.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
          Length = 918

 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 128/267 (47%), Gaps = 10/267 (3%)

Query: 218 LQPSRIDWINLL-----DRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC 272
           +QP RI + +LL       L E    L+ ++    + ++ F      Y+ L+DA  K   
Sbjct: 335 VQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFS-----YNTLLDAICKGGQ 389

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           ++ A  IL +M    I+P++V+ + ++  ++KAG  D A   F  +R  G   D+  YN+
Sbjct: 390 MDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNT 449

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           ++  Y   G+ +  + ++  M + GI++    Y ALL  + + G      ++   M+ E 
Sbjct: 450 LLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREH 509

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P L + + L++ Y + G   +A   F      G + D    +++I A  K  L+  A+
Sbjct: 510 VLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAV 569

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGR 479
           +L+ E+ K+G  P   TY  ++D  GR
Sbjct: 570 SLIDEMTKEGISPNVVTYNSIIDAFGR 596



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 147/320 (45%), Gaps = 5/320 (1%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG-NLDRA 311
           +   V  +S LI A+ +    E+A  +   M E G+ P++VT   ++    K G    + 
Sbjct: 264 YGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQV 323

Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
            + F+ ++ +G QPD+  +NS++      G  +   +L D M    IE+    Y  LL +
Sbjct: 324 AKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDA 383

Query: 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
             + G +  A +I   M ++   P + S + +++ + +AG  D+A + F  M  LG   D
Sbjct: 384 ICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALD 443

Query: 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
                ++++ Y K    ++AL++L E+   G +    TY  L+   G+    +E +++  
Sbjct: 444 RVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFT 503

Query: 492 KISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLA 549
           ++      P      +L D Y++ G+ K+A++   F E K   +  D   +  +I+ L  
Sbjct: 504 EMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEI--FREFKSAGLRADVVLYSALIDALCK 561

Query: 550 GGFLQDAQRVHGLMEAQGFA 569
            G +  A  +   M  +G +
Sbjct: 562 NGLVGSAVSLIDEMTKEGIS 581



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 67/303 (22%), Positives = 127/303 (41%), Gaps = 5/303 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENC-LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           + E   + N+  Y+ +IDA  K     +   +   +M  NG+ PD +T   L+ + S+ G
Sbjct: 294 MKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGG 353

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
             + A+  F+ + +   + D   YN+++ A    GQ  L   ++  M    I  +   Y 
Sbjct: 354 LWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYS 413

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            ++  FA+ G    A  +   MR         S   L+  Y + G  ++A      M  +
Sbjct: 414 TVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASV 473

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G K D     +++  YGK+   D+   +  E++++   P   TY+ L+D   +  L  EA
Sbjct: 474 GIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEA 533

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERII 544
            ++  +    G      +  +L D   + G+   A+  +   E  KE + P+   +  II
Sbjct: 534 MEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLID--EMTKEGISPNVVTYNSII 591

Query: 545 NGL 547
           +  
Sbjct: 592 DAF 594



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 75/157 (47%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+  + K    E+A  IL++M   GI  D+VT   L+  Y K G  D  K+ F  ++
Sbjct: 447 YNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMK 506

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
                P+   Y+++I  Y   G  K  M +     ++G+     +Y AL+ +  + G V 
Sbjct: 507 REHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVG 566

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
            A  + + M  E   P + +   +++A+G++   D++
Sbjct: 567 SAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRS 603



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/306 (20%), Positives = 129/306 (42%), Gaps = 35/306 (11%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ L+  + K+   ++ +++  +M    ++P+++T + L+  YSK G    A E F
Sbjct: 478 DVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIF 537

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
              +S G + D  +Y+++I A    G     +SL+D M   GI  +   Y +++ +F + 
Sbjct: 538 REFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRS 597

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCT-----LLVEAYGQAGDPDQARSN----------- 419
             +  +   +N   +      L + T      +++ +GQ       R+            
Sbjct: 598 ATMDRSADYSNGGSLPFSSSALSALTETEGNRVIQLFGQLTTESNNRTTKDCEEGMQELS 657

Query: 420 -----FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
                F  M +L  KP+    ++++ A  + N  + A  LL EL     +     + +L+
Sbjct: 658 CILEVFRKMHQLEIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNKVYGVVHGLLM 717

Query: 475 D-----WLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLE 529
                 WL       +A+ L  K++E+  +       +L DM    G ++ A   L  LE
Sbjct: 718 GQRENVWL-------QAQSLFDKVNEMDGSTASAFYNALTDMLWHFGQKRGA--ELVALE 768

Query: 530 AKKEQM 535
            +  Q+
Sbjct: 769 GRSRQV 774


>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Cucumis sativus]
          Length = 786

 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 81/367 (22%), Positives = 171/367 (46%), Gaps = 10/367 (2%)

Query: 218 LQPSRIDWINLLDRL-----REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC 272
           + PS   +  ++D L      E + +L+ ++ E+ LS +     V  Y+ LID + K   
Sbjct: 285 IAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPD-----VVTYNSLIDGYGKVGS 339

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           LE+   +  +M + G VPDI+T   L++ Y K   + RA E F  ++++G +P+   Y++
Sbjct: 340 LEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYST 399

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I A+   G  +  + L   M  +G+  +E  Y +L+ +  + G++  A ++ N M    
Sbjct: 400 LIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAG 459

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
            +  + + T L++   +AG   +A   F  M++ G  P+ +   +++  Y K   ++ A+
Sbjct: 460 VKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAM 519

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
            +L ++ +   +P    Y  ++      + + E + +L ++   G +    I  ++ D Y
Sbjct: 520 KILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAY 579

Query: 513 ARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572
            +AG    AL     ++    +     +  +I+GL   G ++ A      M + G   + 
Sbjct: 580 FKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNV 639

Query: 573 RLKVALI 579
            +  +LI
Sbjct: 640 AVYTSLI 646



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 141/320 (44%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LIDA+ K   L +A ++L  M + G+  +IVT T L+    KAG +  A+E F S+ 
Sbjct: 432 YTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSML 491

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P+++VY +++  Y+ A + +  M ++  M    I+    +Y +++        + 
Sbjct: 492 KDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLE 551

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
               I   M+           T +++AY +AG    A + F  M  +G +        +I
Sbjct: 552 ETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLI 611

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
               K  +++ A++    +   G +P  A YT L+D L +   I  A++L  ++   G  
Sbjct: 612 DGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMT 671

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P      +L D   + G  ++AL  +  +     +     +  +++G    G L  A++ 
Sbjct: 672 PDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKF 731

Query: 560 HGLMEAQGFAASERLKVALI 579
              M  +G    E L + L+
Sbjct: 732 FNEMIEKGILPEEVLCICLL 751



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 84/338 (24%), Positives = 137/338 (40%), Gaps = 39/338 (11%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           ++  Y+ LI+ + K   +  A     +M  NG+ P++VT + L+  + K G +  A + F
Sbjct: 358 DIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLF 417

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +R  G  P++  Y S+I A   AG       L++ M+ +G++ +   Y ALL    + 
Sbjct: 418 VDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKA 477

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD---- 431
           G +  A ++   M  +   P  +  T LV  Y +A   + A      M     KPD    
Sbjct: 478 GRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILY 537

Query: 432 -----DRC--------------------------TASMIAAYGKKNLLDKALNLLLELEK 460
                  C                          + ++I AY K      ALN   E++ 
Sbjct: 538 GSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQD 597

Query: 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKK 520
            G E    TY VL+D L +  ++  A     ++  LG  P   +  SL D   +    + 
Sbjct: 598 VGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIES 657

Query: 521 ALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDA 556
           A +   F E +   M PD   F  +I+G L  G LQ+A
Sbjct: 658 AKKL--FDEMQCRGMTPDITAFTALIDGNLKHGNLQEA 693



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 126/283 (44%)

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           VL  ++ + G L+ A E F  +R+    P  +  N ++     +G  +L     + MI +
Sbjct: 224 VLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDMIGA 283

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
           GI  S   Y  ++    + GD+  + ++   MR     P + +   L++ YG+ G  ++ 
Sbjct: 284 GIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEV 343

Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476
            S F+ M  +G  PD      +I  Y K   + +A     E++ +G +P   TY+ L+D 
Sbjct: 344 ASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDA 403

Query: 477 LGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG 536
             +  ++  A +L   +   G  P      SL D   +AG   +A + L  +     ++ 
Sbjct: 404 FCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLN 463

Query: 537 PDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
              +  +++GL   G + +A+ V   M   G + ++++  AL+
Sbjct: 464 IVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALV 506



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 141/302 (46%), Gaps = 6/302 (1%)

Query: 218 LQPSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L P+   + +L+D   +  N    +K+   +L +   + N+  Y+ L+D   K   + +A
Sbjct: 425 LLPNEFTYTSLIDANCKAGNLTEAWKLLNDML-QAGVKLNIVTYTALLDGLCKAGRMIEA 483

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
           E + + M ++GI P+    T LVH Y KA  ++ A +  + +     +PD  +Y S+I  
Sbjct: 484 EEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWG 543

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           + +  + +    +++ M + GI  +  I   ++ ++ + G    A      M+    + T
Sbjct: 544 HCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEAT 603

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           + +  +L++   +AG  + A   F  M+ LG +P+     S+I    K N ++ A  L  
Sbjct: 604 IVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFD 663

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLIN--EAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
           E++  G  P    +T L+D  G L+  N  EA  L+ +++EL       +  SL   +++
Sbjct: 664 EMQCRGMTPDITAFTALID--GNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQ 721

Query: 515 AG 516
            G
Sbjct: 722 CG 723



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 132/303 (43%), Gaps = 12/303 (3%)

Query: 242 KVAELVLSEESFQTNVRD--------YSKLIDAHAKENCLEDAERILKKMNENGIVPDIV 293
           K   ++ +EE F++ ++D        Y+ L+  + K   +EDA +ILK+M E  I PD++
Sbjct: 476 KAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLI 535

Query: 294 TSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMM 353
               ++  +     L+  K   E ++S G   +  +  ++I AY  AG+    ++    M
Sbjct: 536 LYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEM 595

Query: 354 ITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDP 413
              G+E +   Y  L+    + G V  A      M     QP +   T L++   +    
Sbjct: 596 QDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCI 655

Query: 414 DQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVL 473
           + A+  FD M   G  PD     ++I    K   L +AL L+  + +   E     YT L
Sbjct: 656 ESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSL 715

Query: 474 VDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE 533
           V    +   +++A +   ++ E G  P   + + L   Y + G   +A++    L+ + E
Sbjct: 716 VSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYKRGQLDEAIE----LKNEME 771

Query: 534 QMG 536
           +MG
Sbjct: 772 RMG 774



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 140/308 (45%), Gaps = 4/308 (1%)

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
             +    M   GI P + T  V++    K G+L+ ++  F  +R  G  PD   YNS+I 
Sbjct: 273 VRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLID 332

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
            Y   G  +   SL + M   G       Y  L+  + +   +  A +  + M+    +P
Sbjct: 333 GYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKP 392

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
            + + + L++A+ + G    A   F  M R G  P++    S+I A  K   L +A  LL
Sbjct: 393 NVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLL 452

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
            ++ + G +    TYT L+D L +   + EAE++   + + G +P  ++  +L   Y +A
Sbjct: 453 NDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKA 512

Query: 516 GIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASER 573
              + A++ L   +  +  + PD   +  II G  +   L++ + +   M+++G +A+  
Sbjct: 513 ERMEDAMKILK--QMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPV 570

Query: 574 LKVALISS 581
           +   +I +
Sbjct: 571 ISTTIIDA 578



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 97/209 (46%)

Query: 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320
           + +IDA+ K     DA    ++M + G+   IVT  VL+    KAG ++ A + F  + S
Sbjct: 573 TTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLS 632

Query: 321 HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRG 380
            G QP+  VY S+I         +    L D M   G+      + AL+    + G+++ 
Sbjct: 633 LGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQE 692

Query: 381 AGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIA 440
           A  + + M     +  L   T LV  + Q G+  QAR  F+ MI  G  P++     ++ 
Sbjct: 693 ALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLR 752

Query: 441 AYGKKNLLDKALNLLLELEKDGFEPGPAT 469
            Y K+  LD+A+ L  E+E+ G     AT
Sbjct: 753 EYYKRGQLDEAIELKNEMERMGLITESAT 781



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 90/222 (40%), Gaps = 4/222 (1%)

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
           ++  L   F + G +  A +  + MR     P   SC  L+    ++G+    R  F+ M
Sbjct: 221 VFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDM 280

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483
           I  G  P       MI    K+  L+ +  L +++ + G  P   TY  L+D  G++  +
Sbjct: 281 IGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSL 340

Query: 484 NEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFE 541
            E   L  ++ ++G  P       L + Y +     +A +   F E K   + P+   + 
Sbjct: 341 EEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEY--FSEMKNNGLKPNVVTYS 398

Query: 542 RIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQT 583
            +I+     G +Q A ++   M   G   +E    +LI +  
Sbjct: 399 TLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANC 440


>gi|218194011|gb|EEC76438.1| hypothetical protein OsI_14128 [Oryza sativa Indica Group]
          Length = 669

 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 129/302 (42%), Gaps = 4/302 (1%)

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           + +E +L+ M E G++PD  +   +V  ++ AGNL R  E F  + + G  PD   Y  +
Sbjct: 69  DQSEMLLRTMLEAGVLPDTASYRHIVDAFAGAGNLSRVAELFAEMAATGHTPDPSAYLGL 128

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           + A+   G     ++++  M   G   +   Y  LL  + + G   G  ++   MR    
Sbjct: 129 MEAHTRVGATAEAVAVLRQMQADGCPPTAATYRVLLDLYGRQGRFDGVRELFREMRT-TV 187

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD-DRCTASMIAAYGKKNLLDKAL 452
            P   +  +L   +G  G   +    F  M+    +PD D C   M+A  G+  L + A 
Sbjct: 188 PPDTATYNVLFRVFGDGGFFKEVVELFQDMLHSEVEPDIDTCENVMVAC-GRGGLHEDAR 246

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
            +L  +  +G  P    YT LV+ LG   +  EA      ++E+G  P  +   +L + +
Sbjct: 247 EVLDYITTEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANAF 306

Query: 513 ARAGIEKKALQALGFLEAKKE-QMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAAS 571
           A+ G+ ++A      +      Q   D F+ +I     G  L DA + +  M    F   
Sbjct: 307 AKGGLFQEAEAIFSRMTNNAAIQKDKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPD 366

Query: 572 ER 573
           ER
Sbjct: 367 ER 368



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 83/189 (43%), Gaps = 1/189 (0%)

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           EDA  +L  +   G+VP     T LV     A   + A  AF  +   G  P  + YN++
Sbjct: 243 EDAREVLDYITTEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNAL 302

Query: 334 IMAYVNAGQPKLGMSLVDMMIT-SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
             A+   G  +   ++   M   + I++ ++ + AL+ ++ Q   +  A +    MR   
Sbjct: 303 ANAFAKGGLFQEAEAIFSRMTNNAAIQKDKDSFDALIEAYCQGAQLDDAVKAYMEMRKSR 362

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
           F P   S   ++ AY  AG  D+++  F+ +  +   P       M++ Y + +    A 
Sbjct: 363 FNPDERSLEGVLNAYCIAGVIDESKEQFEELQSMVTVPSIIAYCMMLSLYARNDRWTDAY 422

Query: 453 NLLLELEKD 461
           +LL E++ +
Sbjct: 423 DLLEEMKTN 431



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 99/235 (42%), Gaps = 7/235 (2%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L          ++   + + M  + + PDI T   ++    + G  + A+E  + + 
Sbjct: 194 YNVLFRVFGDGGFFKEVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDAREVLDYIT 253

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G  P  K Y  ++ A  +A   +      +MM   G   + E Y AL  +FA+ G  +
Sbjct: 254 TEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANAFAKGGLFQ 313

Query: 380 GA----GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
            A     ++TN   I++ + + ++   L+EAY Q    D A   +  M +    PD+R  
Sbjct: 314 EAEAIFSRMTNNAAIQKDKDSFDA---LIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSL 370

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
             ++ AY    ++D++     EL+     P    Y +++    R     +A  LL
Sbjct: 371 EGVLNAYCIAGVIDESKEQFEELQSMVTVPSIIAYCMMLSLYARNDRWTDAYDLL 425



 Score = 39.3 bits (90), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 63/134 (47%), Gaps = 4/134 (2%)

Query: 241 FKVAELVLS----EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTST 296
           F+ AE + S      + Q +   +  LI+A+ +   L+DA +   +M ++   PD  +  
Sbjct: 312 FQEAEAIFSRMTNNAAIQKDKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLE 371

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
            +++ Y  AG +D +KE FE L+S    P    Y  M+  Y    +      L++ M T+
Sbjct: 372 GVLNAYCIAGVIDESKEQFEELQSMVTVPSIIAYCMMLSLYARNDRWTDAYDLLEEMKTN 431

Query: 357 GIERSEEIYLALLR 370
               + ++  ++++
Sbjct: 432 RASSTHQVIASMIK 445


>gi|242054943|ref|XP_002456617.1| hypothetical protein SORBIDRAFT_03g039460 [Sorghum bicolor]
 gi|241928592|gb|EES01737.1| hypothetical protein SORBIDRAFT_03g039460 [Sorghum bicolor]
          Length = 410

 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 125/277 (45%), Gaps = 3/277 (1%)

Query: 241 FKVAELVLSEESFQTNVRD---YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTV 297
           FK A L+  E   +  VR+   Y+ LI    +   L+DA ++ + M   GI P +VT  +
Sbjct: 124 FKSARLLFDEMPLKGVVRNVVSYNILIAGLCRHGKLKDAAQLFEAMRREGIHPSMVTFNL 183

Query: 298 LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG 357
           L+  Y KAG +  A   F  +++ G QP    YN +I  +  A      +     M    
Sbjct: 184 LIDGYGKAGKMSNALHFFNQMKAAGLQPSVVTYNELIGGFCRARDIAHAIRAFSDMKERR 243

Query: 358 IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
           +  ++  Y  L+ +FA+  ++  A ++ + M     +  ++S  +L+ A    G    AR
Sbjct: 244 LAPTKVTYTILIGAFAKENEMDRAFEMLSEMEKAGLEVDVQSYGVLLHALCMEGKMMHAR 303

Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
             F  M   G KP++     MI  YG++    KAL L++E+ K G  P  A+Y + +  L
Sbjct: 304 KLFQSMDSKGVKPNNVLYDMMIYGYGREGSSYKALRLIMEMRKSGLIPNVASYCLTIRLL 363

Query: 478 GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
                  EAE L+G + + G      I   L D  AR
Sbjct: 364 CNEGKCQEAEALIGDMEDAGLQTSESICRVLFDAKAR 400



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 149/365 (40%), Gaps = 39/365 (10%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V   + L+    +   + +A R+   M   G+ P+ VT T L+H Y   G  +      
Sbjct: 37  DVAACTALVHGCCQSGDVAEARRVFDVMPRLGVTPNEVTYTALIHGYFVRGQREMGFALV 96

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +R  G +P+   YN ++  +   G+ K    L D M   G+ R+   Y  L+    + 
Sbjct: 97  GEMRRGGVEPNLYTYNCLVGEWCRTGEFKSARLLFDEMPLKGVVRNVVSYNILIAGLCRH 156

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD---- 431
           G ++ A Q+   MR E   P++ +  LL++ YG+AG    A   F+ M   G +P     
Sbjct: 157 GKLKDAAQLFEAMRREGIHPSMVTFNLLIDGYGKAGKMSNALHFFNQMKAAGLQPSVVTY 216

Query: 432 -----DRCTAS--------------------------MIAAYGKKNLLDKALNLLLELEK 460
                  C A                           +I A+ K+N +D+A  +L E+EK
Sbjct: 217 NELIGGFCRARDIAHAIRAFSDMKERRLAPTKVTYTILIGAFAKENEMDRAFEMLSEMEK 276

Query: 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKK 520
            G E    +Y VL+  L     +  A +L   +   G  P   +   +   Y R G   K
Sbjct: 277 AGLEVDVQSYGVLLHALCMEGKMMHARKLFQSMDSKGVKPNNVLYDMMIYGYGREGSSYK 336

Query: 521 ALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVAL 578
           AL+ +  +E +K  + P+   +   I  L   G  Q+A+ + G ME  G   SE +   L
Sbjct: 337 ALRLI--MEMRKSGLIPNVASYCLTIRLLCNEGKCQEAEALIGDMEDAGLQTSESICRVL 394

Query: 579 ISSQT 583
             ++ 
Sbjct: 395 FDAKA 399


>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
 gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
          Length = 457

 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 109/255 (42%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           Q NV  Y  L+    K   L++A  +  +M   G  PD V   VL+  +SK G++  A  
Sbjct: 119 QPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYR 178

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            FE +   G  P    YNS++  +   G+     SL   M+  G   +   +  LL  F 
Sbjct: 179 LFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFC 238

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           + GD+  A ++   MR     P + S   L+      G P +A+     MIR G  PD  
Sbjct: 239 KMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIV 298

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
               +I  Y K   LD A+ L  E+ K G EP   +Y+ ++D L R   +  A  +   +
Sbjct: 299 SYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDM 358

Query: 494 SELGEAPPFKIQVSL 508
              G AP   + + L
Sbjct: 359 IANGSAPDAAVVIPL 373



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 141/326 (43%), Gaps = 4/326 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N   Y  L+ +  +    E+A  + + M   G  P++ + ++L+    +   +D A E  
Sbjct: 51  NTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELL 110

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G QP+   Y S++      G+ K  + L   M+  G      +Y  L+  F++ 
Sbjct: 111 NEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKK 170

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           GD+  A ++   M  +   PT+ +   L+  + + G+  + +S F  M+R G  P+    
Sbjct: 171 GDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTF 230

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            +++  + K   + +A  L LE+   G  P   +Y  L+  +      +EA++LL ++  
Sbjct: 231 NNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIR 290

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF--ERIINGLLAGGFL 553
            G  P       L D Y+++G    A++   F E  K  + PD F    II+ L   G +
Sbjct: 291 SGVGPDIVSYNILIDGYSKSGALDHAIKL--FYEIPKSGLEPDAFSYSTIIDCLCRAGKV 348

Query: 554 QDAQRVHGLMEAQGFAASERLKVALI 579
             A  V   M A G A    + + L+
Sbjct: 349 GAAFVVFKDMIANGSAPDAAVVIPLV 374



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/250 (22%), Positives = 108/250 (43%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
            V  Y+ L+   +++      + + K M   G VP+I T   L+  + K G++  A   F
Sbjct: 191 TVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLF 250

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +RS G  PD   YN+++    + G+P     L+  MI SG+      Y  L+  +++ 
Sbjct: 251 LEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKS 310

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A ++   +     +P   S + +++   +AG    A   F  MI  G  PD    
Sbjct: 311 GALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVV 370

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             ++    +   L ++  L   + K    P    Y +L+  L + +  ++  ++  +++E
Sbjct: 371 IPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTE 430

Query: 496 LGEAPPFKIQ 505
            G +P  +I 
Sbjct: 431 RGFSPDVEIS 440



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 103/240 (42%), Gaps = 4/240 (1%)

Query: 330 YNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389
           YN ++     +G+        + M+ +G   +   Y  LLRS  Q      A  +   M 
Sbjct: 20  YNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMA 79

Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD 449
            +   P + S ++L+    +    D+A    + MI  GH+P+     S+++   K   L 
Sbjct: 80  AQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLK 139

Query: 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLC 509
           +A++L   +   G  P    Y VL+D   +   + EA +L  ++ E G  P      SL 
Sbjct: 140 EAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLL 199

Query: 510 DMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQG 567
             ++R G E   +Q+L F +  ++   P+   F  +++G    G + +A R+   M + G
Sbjct: 200 SGFSRKG-EFGRVQSL-FKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLG 257



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 57/271 (21%), Positives = 104/271 (38%), Gaps = 8/271 (2%)

Query: 293 VTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDM 352
           ++   L+ + +K+G  D     +  +   G  P+   Y  ++ +   A + +   S+   
Sbjct: 18  LSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRG 77

Query: 353 MITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGD 412
           M   G   +   Y  L+    +   V  A ++ N M     QP + +   L+    + G 
Sbjct: 78  MAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGK 137

Query: 413 PDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTV 472
             +A   F  M+  G  PD      +I  + KK  + +A  L  E+ + G  P   TY  
Sbjct: 138 LKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNS 197

Query: 473 LVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG--IEKKALQALGFLEA 530
           L+    R       + L   +   G  P      +L D + + G  +E   L    FLE 
Sbjct: 198 LLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRL----FLEM 253

Query: 531 KKEQMGPD--DFERIINGLLAGGFLQDAQRV 559
           +     PD   +  ++ G+ + G   +AQR+
Sbjct: 254 RSLGCPPDVVSYNTLMRGMCSKGKPHEAQRL 284


>gi|222628656|gb|EEE60788.1| hypothetical protein OsJ_14372 [Oryza sativa Japonica Group]
          Length = 748

 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 138/313 (44%), Gaps = 1/313 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ LID  +KE  ++ A  +  KM E  + PD+VT   L+    K   + +++   
Sbjct: 156 DVCSYNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVL 215

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E +   G +P+ K YNS+I  Y  AG  K  + +   M +SG+        + + +  + 
Sbjct: 216 EQMVDAGIRPNNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRH 275

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
             ++ A  I + M ++  +P + S + L+  Y   G      S  + M+  G  P+ R  
Sbjct: 276 NRIKEAKDIFDSMVLKGPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFF 335

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +I AY +  ++DKA+ +  +++  G  P   T+  ++  L R+  +++A      + +
Sbjct: 336 NILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVD 395

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKK-EQMGPDDFERIINGLLAGGFLQ 554
           +G  P   +   L       G   KA + +  +  K     G   F  IIN L   G + 
Sbjct: 396 IGVPPSEAVYRCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLFKEGRVA 455

Query: 555 DAQRVHGLMEAQG 567
           + + +  LM   G
Sbjct: 456 EGKDIMDLMVQTG 468



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 83/395 (21%), Positives = 173/395 (43%), Gaps = 37/395 (9%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEE--------SFQTNVRDYSKLIDAHAK 269
           + P  + + +L+D L         K  E+V SE           + N + Y+ LI  ++ 
Sbjct: 188 VSPDVVTYNSLIDGL--------CKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYST 239

Query: 270 ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKV 329
               +++ R+ K+M+ +G++P +V     +H   +   +  AK+ F+S+   G +P+   
Sbjct: 240 AGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNIIS 299

Query: 330 YNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389
           Y++++  Y   G      SLV++M++ GI  +   +  L+ ++A+CG +  A  I   M+
Sbjct: 300 YSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQ 359

Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD 449
            +   P   +   ++ +  + G  D A   F++M+ +G  P +     +I        L 
Sbjct: 360 NKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQGCCNHGELV 419

Query: 450 KALNLLLEL-EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSL 508
           KA  L+ E+  KD   PG   ++ +++ L +   + E + ++  + + G+ P      SL
Sbjct: 420 KAKELISEMMNKDIPPPGVKYFSSIINNLFKEGRVAEGKDIMDLMVQTGQRPNVVTFNSL 479

Query: 509 CDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV--------- 559
            + Y   G  ++A   L  + +   +     +  +++G    G + DA  V         
Sbjct: 480 MEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGV 539

Query: 560 -----------HGLMEAQGFAASERLKVALISSQT 583
                      HGL +A+   A++++   +I S T
Sbjct: 540 KPTSVLYNIILHGLFQARRTTAAKKMFHEMIESGT 574



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 131/304 (43%), Gaps = 14/304 (4%)

Query: 207 PSPLLAEWKELLQ----PSRIDWINLLDRLREQN-----TQLYFKVAELVLSEESFQTNV 257
           P   LA +  LL+    P    +  L+D   ++       +L++K     + E+S   +V
Sbjct: 138 PELALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVDKAYELFYK-----MIEQSVSPDV 192

Query: 258 RDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFES 317
             Y+ LID   K   +  +ER+L++M + GI P+  T   L++ YS AG    +   F+ 
Sbjct: 193 VTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYSTAGMWKESVRVFKE 252

Query: 318 LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
           + S G  P     NS I A     + K    + D M+  G + +   Y  LL  +A  G 
Sbjct: 253 MSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNIISYSTLLHGYAAEGC 312

Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
                 + N+M  +   P      +L+ AY + G  D+A   F+ M   G  PD    A+
Sbjct: 313 FANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFAT 372

Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           +I++  +   LD AL+    +   G  P  A Y  L+        + +A++L+ ++    
Sbjct: 373 VISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQGCCNHGELVKAKELISEMMNKD 432

Query: 498 EAPP 501
             PP
Sbjct: 433 IPPP 436



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 112/292 (38%), Gaps = 4/292 (1%)

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL 349
           P I T  +L+  Y +    + A   F  L   G  PD   YN++I  +   G+      L
Sbjct: 120 PTIYTYNILIDCYRRMHRPELALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVDKAYEL 179

Query: 350 VDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409
              MI   +      Y +L+    +  ++  + ++   M     +P  ++   L+  Y  
Sbjct: 180 FYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYST 239

Query: 410 AGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPAT 469
           AG   ++   F  M   G  P      S I A  + N + +A ++   +   G +P   +
Sbjct: 240 AGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNIIS 299

Query: 470 YTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLE 529
           Y+ L+              L+  +   G  P  +    L + YAR G+  KA+  L F +
Sbjct: 300 YSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAM--LIFED 357

Query: 530 AKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
            + + M PD   F  +I+ L   G L DA      M   G   SE +   LI
Sbjct: 358 MQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLI 409



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/252 (21%), Positives = 110/252 (43%), Gaps = 16/252 (6%)

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           V+ +S +I+   KE  + + + I+  M + G  P++VT   L+  Y   GN++ A    +
Sbjct: 438 VKYFSSIINNLFKEGRVAEGKDIMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLD 497

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
           ++ S G +P+  +Y +++  Y   G+    +++   M+  G++ +  +Y  +L    Q  
Sbjct: 498 AMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYNIILHGLFQAR 557

Query: 377 DVRGAGQITNIMRIEEFQPTLES-CTLLVEAYG-------QAGDPDQARSNFDYMIRLGH 428
               A ++        F   +ES  T+ ++ YG       +    D+A    + +  +  
Sbjct: 558 RTTAAKKM--------FHEMIESGTTVSIQTYGVVLGGLCRNNCTDEANMLLEKLFAMNV 609

Query: 429 KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQ 488
           K D      +I+A  K     +A  L   +   G  P   TY +++  L + +   EA+ 
Sbjct: 610 KFDIITFNIVISAMLKVGRRQEAKELFAAISTYGLVPTVHTYNLMISNLIKEESYEEADN 669

Query: 489 LLGKISELGEAP 500
           L   + + G AP
Sbjct: 670 LFISVEKSGRAP 681



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 105/243 (43%), Gaps = 3/243 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVT--STVLVHMYSKAGNLDRAKEAFES 317
           Y  LI        L  A+ ++ +M    I P  V   S+++ +++ K G +   K+  + 
Sbjct: 405 YRCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLF-KEGRVAEGKDIMDL 463

Query: 318 LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
           +   G +P+   +NS++  Y   G  +   +L+D M + GIE +  IY  L+  + + G 
Sbjct: 464 MVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGR 523

Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
           +  A  +   M  +  +PT     +++    QA     A+  F  MI  G     +    
Sbjct: 524 IDDALTVFRDMLHKGVKPTSVLYNIILHGLFQARRTTAAKKMFHEMIESGTTVSIQTYGV 583

Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           ++    + N  D+A  LL +L     +    T+ +++  + ++    EA++L   IS  G
Sbjct: 584 VLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMLKVGRRQEAKELFAAISTYG 643

Query: 498 EAP 500
             P
Sbjct: 644 LVP 646



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 95/240 (39%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  ++ L++ +     +E+A  +L  M   GI P+      LV  Y K G +D A   F
Sbjct: 472 NVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVF 531

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G +P   +YN ++     A +      +   MI SG   S + Y  +L    + 
Sbjct: 532 RDMLHKGVKPTSVLYNIILHGLFQARRTTAAKKMFHEMIESGTTVSIQTYGVVLGGLCRN 591

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
                A  +   +     +  + +  +++ A  + G   +A+  F  +   G  P     
Sbjct: 592 NCTDEANMLLEKLFAMNVKFDIITFNIVISAMLKVGRRQEAKELFAAISTYGLVPTVHTY 651

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             MI+   K+   ++A NL + +EK G  P       +V  L +   + +A   L  I E
Sbjct: 652 NLMISNLIKEESYEEADNLFISVEKSGRAPDSRLLNHIVRMLLKKAEVAKASNYLSIIDE 711



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 48/257 (18%), Positives = 100/257 (38%)

Query: 325 PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQI 384
           P    YN +I  Y    +P+L +++   ++ +G+      Y  L+  F++ G+V  A ++
Sbjct: 120 PTIYTYNILIDCYRRMHRPELALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVDKAYEL 179

Query: 385 TNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGK 444
              M  +   P + +   L++   +  +  ++    + M+  G +P+++   S+I  Y  
Sbjct: 180 FYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYST 239

Query: 445 KNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKI 504
             +  +++ +  E+   G  P        +  L R   I EA+ +   +   G  P    
Sbjct: 240 AGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNIIS 299

Query: 505 QVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLME 564
             +L   YA  G        +  + +K        F  +IN     G +  A  +   M+
Sbjct: 300 YSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQ 359

Query: 565 AQGFAASERLKVALISS 581
            +G          +ISS
Sbjct: 360 NKGMIPDTVTFATVISS 376



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 42/85 (49%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E     +++ Y  ++    + NC ++A  +L+K+    +  DI+T  +++    K G   
Sbjct: 571 ESGTTVSIQTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMLKVGRRQ 630

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMI 334
            AKE F ++ ++G  P    YN MI
Sbjct: 631 EAKELFAAISTYGLVPTVHTYNLMI 655



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 39/226 (17%), Positives = 90/226 (39%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           + N   Y  L+D + K   ++DA  + + M   G+ P  V   +++H   +A     AK+
Sbjct: 505 EPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYNIILHGLFQARRTTAAKK 564

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            F  +   G     + Y  ++              L++ +    ++     +  ++ +  
Sbjct: 565 MFHEMIESGTTVSIQTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAML 624

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           + G  + A ++   +      PT+ +  L++    +    ++A + F  + + G  PD R
Sbjct: 625 KVGRRQEAKELFAAISTYGLVPTVHTYNLMISNLIKEESYEEADNLFISVEKSGRAPDSR 684

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
               ++    KK  + KA N L  ++++      +T ++L     R
Sbjct: 685 LLNHIVRMLLKKAEVAKASNYLSIIDENNLTLEASTISLLASLFSR 730


>gi|224111844|ref|XP_002316000.1| predicted protein [Populus trichocarpa]
 gi|222865040|gb|EEF02171.1| predicted protein [Populus trichocarpa]
          Length = 745

 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 147/312 (47%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L    FQ NV  YS L+ +  K   +++A ++L +M  N + PD+VT ++L+H   K G 
Sbjct: 317 LLSSGFQLNVILYSVLLSSLCKRGQVDEALQLLYEMEANNLQPDLVTYSILIHGLCKQGK 376

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           + +A + ++ +  +   P+   ++ ++      G         D +I S +     +Y  
Sbjct: 377 VQQAIQLYKEMCFNRIFPNSFAHSGILKGLCEKGMLSDARMYFDSLIMSNLRPDVTLYNI 436

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++  + + GDV  A ++   +R +   P++ +   L+  + +     +AR   + +   G
Sbjct: 437 MIDGYVKLGDVEEAVRLYKRLRDKAITPSIVTFNSLIYGFCKNRKVVEARRLLESIKLHG 496

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            +P      +++ AY ++  ++K   LLLE+     EP   TYTV++  L + + + E+ 
Sbjct: 497 LEPSAVTYTTLMNAYCEEGNINKLHELLLEMNLKDIEPTVVTYTVVIKGLCKQRKLEESV 556

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
           QLL  +   G AP      ++   + +A   +KA + L  +     +  P  +  +I+GL
Sbjct: 557 QLLEDMRAKGLAPDQITYNTIIQCFCKAKDMRKAFELLDDMLIHNLEPTPATYNVLIDGL 616

Query: 548 LAGGFLQDAQRV 559
              G ++DA RV
Sbjct: 617 CRYGDVEDADRV 628



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 71/362 (19%), Positives = 160/362 (44%), Gaps = 10/362 (2%)

Query: 218 LQPSRIDWINLLDRL-----REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC 272
           LQP  + +  L+  L      +Q  QLY ++    +   SF      +S ++    ++  
Sbjct: 357 LQPDLVTYSILIHGLCKQGKVQQAIQLYKEMCFNRIFPNSFA-----HSGILKGLCEKGM 411

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           L DA      +  + + PD+    +++  Y K G+++ A   ++ LR     P    +NS
Sbjct: 412 LSDARMYFDSLIMSNLRPDVTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAITPSIVTFNS 471

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I  +    +      L++ +   G+E S   Y  L+ ++ + G++    ++   M +++
Sbjct: 472 LIYGFCKNRKVVEARRLLESIKLHGLEPSAVTYTTLMNAYCEEGNINKLHELLLEMNLKD 531

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
            +PT+ + T++++   +    +++    + M   G  PD     ++I  + K   + KA 
Sbjct: 532 IEPTVVTYTVVIKGLCKQRKLEESVQLLEDMRAKGLAPDQITYNTIIQCFCKAKDMRKAF 591

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
            LL ++     EP PATY VL+D L R   + +A+++L  + +           ++   +
Sbjct: 592 ELLDDMLIHNLEPTPATYNVLIDGLCRYGDVEDADRVLVSLQDRNINLTKVAYTTMIKAH 651

Query: 513 ARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572
              G  ++A++    +  K  ++   D+  +IN L     + +A+    +M + G +  +
Sbjct: 652 CVKGDAQRAVKVFHQMVEKGFEVSIKDYSAVINRLCKRCLINEAKYYFCIMLSDGVSPDQ 711

Query: 573 RL 574
            +
Sbjct: 712 EI 713



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 112/238 (47%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L++A+ +E  +     +L +MN   I P +VT TV++    K   L+ + +  E +R
Sbjct: 504 YTTLMNAYCEEGNINKLHELLLEMNLKDIEPTVVTYTVVIKGLCKQRKLEESVQLLEDMR 563

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G  PD+  YN++I  +  A   +    L+D M+   +E +   Y  L+    + GDV 
Sbjct: 564 AKGLAPDQITYNTIIQCFCKAKDMRKAFELLDDMLIHNLEPTPATYNVLIDGLCRYGDVE 623

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++   ++      T  + T +++A+   GD  +A   F  M+  G +   +  +++I
Sbjct: 624 DADRVLVSLQDRNINLTKVAYTTMIKAHCVKGDAQRAVKVFHQMVEKGFEVSIKDYSAVI 683

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
               K+ L+++A      +  DG  P    + ++++   R   ++   +LL  + + G
Sbjct: 684 NRLCKRCLINEAKYYFCIMLSDGVSPDQEIFEMMLNAFHRAGHVHSVFELLAVMIKFG 741



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 145/304 (47%), Gaps = 9/304 (2%)

Query: 192 KLITDKILSLEKE----EDPSPLLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKVAEL 246
           +L+ D++L  E       D   +L + KE  L+PS   + +LL  LR  +T + + V   
Sbjct: 83  RLVLDQMLQEEVASRMVHDALFVLVKMKEQNLRPSIQTYNSLLYNLR--HTDIMWDVYND 140

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           +    + Q+  R  S ++D    ++   DA   L++ +     P +V+   ++  Y K G
Sbjct: 141 IKDSGTPQS-ARTSSIIVDGLCGQSRFRDAVLFLRQNDGKEFAPSVVSFNTIMSRYCKLG 199

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
             D AK  F  +  +G  PD   YN +I   + AG  +  + L + M   G++     Y 
Sbjct: 200 LADVAKSFFCMMLKYGILPDTYSYNILIHGLIVAGSMEEALELTNDMEKQGLQPDMVTYK 259

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEE-FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
            + + F   G + GA +I   M  +E  +P L + T+L+  + Q G+ ++A      ++ 
Sbjct: 260 IVAKGFHLLGLMSGAREIIQKMLTDEGLKPDLVTYTVLICGHCQMGNIEEALRLRRDLLS 319

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
            G + +    + ++++  K+  +D+AL LL E+E +  +P   TY++L+  L +   + +
Sbjct: 320 SGFQLNVILYSVLLSSLCKRGQVDEALQLLYEMEANNLQPDLVTYSILIHGLCKQGKVQQ 379

Query: 486 AEQL 489
           A QL
Sbjct: 380 AIQL 383



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 75/332 (22%), Positives = 144/332 (43%), Gaps = 47/332 (14%)

Query: 236 NTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTS 295
           + ++YF    L++S  + + +V  Y+ +ID + K   +E+A R+ K++ +  I P IVT 
Sbjct: 414 DARMYFD--SLIMS--NLRPDVTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAITPSIVTF 469

Query: 296 TVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPK------LGMSL 349
             L++ + K   +  A+   ES++ HG +P    Y +++ AY   G         L M+L
Sbjct: 470 NSLIYGFCKNRKVVEARRLLESIKLHGLEPSAVTYTTLMNAYCEEGNINKLHELLLEMNL 529

Query: 350 VDM-----------------------------MITSGIERSEEIYLALLRSFAQCGDVRG 380
            D+                             M   G+   +  Y  +++ F +  D+R 
Sbjct: 530 KDIEPTVVTYTVVIKGLCKQRKLEESVQLLEDMRAKGLAPDQITYNTIIQCFCKAKDMRK 589

Query: 381 AGQITNIMRIEEFQPTLESCTLLVEA---YGQAGDPDQARSNF-DYMIRLGHKPDDRCTA 436
           A ++ + M I   +PT  +  +L++    YG   D D+   +  D  I L          
Sbjct: 590 AFELLDDMLIHNLEPTPATYNVLIDGLCRYGDVEDADRVLVSLQDRNINLTKVA----YT 645

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
           +MI A+  K    +A+ +  ++ + GFE     Y+ +++ L +  LINEA+     +   
Sbjct: 646 TMIKAHCVKGDAQRAVKVFHQMVEKGFEVSIKDYSAVINRLCKRCLINEAKYYFCIMLSD 705

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFL 528
           G +P  +I   + + + RAG      + L  +
Sbjct: 706 GVSPDQEIFEMMLNAFHRAGHVHSVFELLAVM 737



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 131/300 (43%), Gaps = 5/300 (1%)

Query: 276 AERILKKM-NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           A  I++KM  + G+ PD+VT TVL+  + + GN++ A      L S GFQ +  +Y+ ++
Sbjct: 274 AREIIQKMLTDEGLKPDLVTYTVLICGHCQMGNIEEALRLRRDLLSSGFQLNVILYSVLL 333

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
            +    GQ    + L+  M  + ++     Y  L+    + G V+ A Q+   M      
Sbjct: 334 SSLCKRGQVDEALQLLYEMEANNLQPDLVTYSILIHGLCKQGKVQQAIQLYKEMCFNRIF 393

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P   + + +++   + G    AR  FD +I    +PD      MI  Y K   +++A+ L
Sbjct: 394 PNSFAHSGILKGLCEKGMLSDARMYFDSLIMSNLRPDVTLYNIMIDGYVKLGDVEEAVRL 453

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
              L      P   T+  L+    + + + EA +LL  I   G  P      +L + Y  
Sbjct: 454 YKRLRDKAITPSIVTFNSLIYGFCKNRKVVEARRLLESIKLHGLEPSAVTYTTLMNAYCE 513

Query: 515 AGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572
            G   K  + L  LE   + + P    +  +I GL     L+++ ++   M A+G A  +
Sbjct: 514 EGNINKLHELL--LEMNLKDIEPTVVTYTVVIKGLCKQRKLEESVQLLEDMRAKGLAPDQ 571



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 50/248 (20%), Positives = 113/248 (45%), Gaps = 4/248 (1%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVL--SEESFQTNVRDYSKLIDAHAKENCLED 275
           L+PS + +  L++   E+      K+ EL+L  + +  +  V  Y+ +I    K+  LE+
Sbjct: 497 LEPSAVTYTTLMNAYCEEGN--INKLHELLLEMNLKDIEPTVVTYTVVIKGLCKQRKLEE 554

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           + ++L+ M   G+ PD +T   ++  + KA ++ +A E  + +  H  +P    YN +I 
Sbjct: 555 SVQLLEDMRAKGLAPDQITYNTIIQCFCKAKDMRKAFELLDDMLIHNLEPTPATYNVLID 614

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
                G  +    ++  +    I  ++  Y  ++++    GD + A ++ + M  + F+ 
Sbjct: 615 GLCRYGDVEDADRVLVSLQDRNINLTKVAYTTMIKAHCVKGDAQRAVKVFHQMVEKGFEV 674

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
           +++  + ++    +    ++A+  F  M+  G  PD      M+ A+ +   +     LL
Sbjct: 675 SIKDYSAVINRLCKRCLINEAKYYFCIMLSDGVSPDQEIFEMMLNAFHRAGHVHSVFELL 734

Query: 456 LELEKDGF 463
             + K G 
Sbjct: 735 AVMIKFGL 742



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 75/359 (20%), Positives = 153/359 (42%), Gaps = 33/359 (9%)

Query: 217 LLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAH--AKENCLE 274
           +L  +++D  ++++ L  QN         L  +E  FQ +    S+ + +H  A++   +
Sbjct: 25  MLNQAQMD--DVIENLSVQNADFVADFYHLSRNEFGFQHS--RVSRFLVSHVLARKRRFK 80

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK--KVYNS 332
           D   +L +M +  +   +V   + V +  K  NL  + + + SL  +    D    VYN 
Sbjct: 81  DLRLVLDQMLQEEVASRMVHDALFVLVKMKEQNLRPSIQTYNSLLYNLRHTDIMWDVYND 140

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE- 391
           +     ++G P+   +    +I  G+                CG  R    +  + + + 
Sbjct: 141 I----KDSGTPQSART--SSIIVDGL----------------CGQSRFRDAVLFLRQNDG 178

Query: 392 -EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDK 450
            EF P++ S   ++  Y + G  D A+S F  M++ G  PD      +I        +++
Sbjct: 179 KEFAPSVVSFNTIMSRYCKLGLADVAKSFFCMMLKYGILPDTYSYNILIHGLIVAGSMEE 238

Query: 451 ALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK-ISELGEAPPFKIQVSLC 509
           AL L  ++EK G +P   TY ++      L L++ A +++ K +++ G  P       L 
Sbjct: 239 ALELTNDMEKQGLQPDMVTYKIVAKGFHLLGLMSGAREIIQKMLTDEGLKPDLVTYTVLI 298

Query: 510 DMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
             + + G  ++AL+    L +   Q+    +  +++ L   G + +A ++   MEA   
Sbjct: 299 CGHCQMGNIEEALRLRRDLLSSGFQLNVILYSVLLSSLCKRGQVDEALQLLYEMEANNL 357


>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
          Length = 778

 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 113/239 (47%)

Query: 268 AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK 327
            +E  LE+A ++L    + G   D V+   L+  Y K GN+DRA + ++ ++     P  
Sbjct: 464 CREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPST 523

Query: 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNI 387
             YN +I      G+ +  +S ++ ++ SG+   E  Y  +L  + + GDV  A Q  N 
Sbjct: 524 VTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNK 583

Query: 388 MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447
           M    F+P + +C +L+      G  ++A   F+  +  G   D     ++I +  K+  
Sbjct: 584 MVENSFKPDVFTCNILLRGLCMEGMLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGR 643

Query: 448 LDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQV 506
           LD A NLL E+E+    P   TY  ++  L     I EAE+ + K+ E G  P   +Q+
Sbjct: 644 LDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGXLPXQVLQL 702



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/302 (22%), Positives = 126/302 (41%), Gaps = 5/302 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  ++ +I  +  EN  +DA   L  M +    PD VT   ++    K G L  A++  
Sbjct: 207 NVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDALCKKGRLGDARDLL 266

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             ++S G  P++  YN ++  Y   G  K   +++++M  + +      Y  L+      
Sbjct: 267 MDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNE 326

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A ++ + M   +  P + S   L+    +     +A    + M   G KP+    
Sbjct: 327 GRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTH 386

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             M+  Y K+  +D A N + ++E+ GF P   TY  L++   +   + EA      + E
Sbjct: 387 NIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEA---FRTMDE 443

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
           +G        V+L  +      EKK  +A   L + +++    D   +  G L  G+ +D
Sbjct: 444 MGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFID--EVSYGTLIVGYFKD 501

Query: 556 AQ 557
             
Sbjct: 502 GN 503



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/286 (20%), Positives = 122/286 (42%)

Query: 287 GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLG 346
           GIVP++ T  ++++ Y        A E    +  +   PD   YN+++ A    G+    
Sbjct: 203 GIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDALCKKGRLGDA 262

Query: 347 MSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA 406
             L+  M + G+  +   Y  L+  + + G ++ A  +  +M      P + +  +L+  
Sbjct: 263 RDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLING 322

Query: 407 YGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG 466
               G  ++A    D M  L   PD     ++I    + + + +A  LL E+ + G +P 
Sbjct: 323 LCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPN 382

Query: 467 PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALG 526
             T+ ++V W  +   +++A   + K+ E G +P      +L + Y +AG   +A + + 
Sbjct: 383 AVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMD 442

Query: 527 FLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572
            +  K  +M       I+  L     L++A ++      +G+   E
Sbjct: 443 EMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDE 488



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 73/342 (21%), Positives = 149/342 (43%), Gaps = 14/342 (4%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++++ +   +V  Y+ LI+    E  +E+A ++  +M    ++PD+V+   L++   +  
Sbjct: 303 LMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWS 362

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            +  A +  E +   G +P+   +N M+  Y   G+     + +  M  SG       Y 
Sbjct: 363 KISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYN 422

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL--LVEAYGQAGDPDQARSNFDYMI 424
            L+  + + G++  A +  + M  +  +  ++S TL  ++    +    ++A        
Sbjct: 423 TLINGYCKAGNMGEAFRTMDEMGRKNMK--MDSVTLNTILRTLCREKKLEEAYKLLSSAR 480

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
           + G+  D+    ++I  Y K   +D+AL L  E+++    P   TY  ++   G L    
Sbjct: 481 KRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCII---GGLCQCG 537

Query: 485 EAEQLLGKISELGEA---PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF- 540
           + EQ + K++EL E+   P      ++   Y R G  +KA Q     +  +    PD F 
Sbjct: 538 KTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHN--KMVENSFKPDVFT 595

Query: 541 -ERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
              ++ GL   G L+ A ++     ++G A        LI+S
Sbjct: 596 CNILLRGLCMEGMLEKALKLFNTWVSKGKAIDTVTYNTLITS 637



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 64/301 (21%), Positives = 121/301 (40%), Gaps = 7/301 (2%)

Query: 264 IDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM---YSKAGNLDRAKEAFESLRS 320
           I A+ +      A +I KKM    + P+++T   L++    Y  + ++  ++EAF     
Sbjct: 142 IGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSFSREAFNDAIK 201

Query: 321 HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRG 380
            G  P+   +N +I  Y    + K  +  +++M           Y  +L +  + G +  
Sbjct: 202 LGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDALCKKGRLGD 261

Query: 381 AGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIA 440
           A  +   M+     P   +  +LV  Y + G   +A +  + M +    PD      +I 
Sbjct: 262 ARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLIN 321

Query: 441 AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
               +  +++A  L  E+E     P   +Y  L++       I+EA +LL ++SE G  P
Sbjct: 322 GLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKP 381

Query: 501 PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQR 558
                  +   Y + G    A   +  +E  +    PD   +  +ING    G + +A R
Sbjct: 382 NAVTHNIMVKWYCKEGKMDDASNTITKME--ESGFSPDCVTYNTLINGYCKAGNMGEAFR 439

Query: 559 V 559
            
Sbjct: 440 T 440



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 92/246 (37%), Gaps = 42/246 (17%)

Query: 324 QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQ 383
            P K + ++ I AYV +GQP                                     A Q
Sbjct: 132 SPSKALLDTAIGAYVQSGQP-----------------------------------HHAFQ 156

Query: 384 ITNIMRIEEFQPTLESCTLLVEA---YGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIA 440
           I   M+    +P L +C  L+ +   Y  +     +R  F+  I+LG  P+      +I 
Sbjct: 157 IFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSFSREAFNDAIKLGIVPNVNTFNIVIY 216

Query: 441 AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
            Y  +N    A+  L  + K    P   TY  ++D L +   + +A  LL  +   G  P
Sbjct: 217 GYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDALCKKGRLGDARDLLMDMKSRGLLP 276

Query: 501 PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQR 558
                  L   Y + G  K+A   +  +   +  + PD   +  +INGL   G +++A +
Sbjct: 277 NRNTYNILVYGYCKMGWLKEAANVIELM--TQNNLLPDVWTYNMLINGLCNEGRIEEAFK 334

Query: 559 VHGLME 564
           +   ME
Sbjct: 335 LRDEME 340


>gi|242043130|ref|XP_002459436.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
 gi|241922813|gb|EER95957.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
          Length = 684

 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 119/253 (47%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +S + F  N + Y+ +I A  K+  L++A R++++M   G  PDI T   +++       
Sbjct: 412 MSAKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTIIYHLCNNDQ 471

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D A+  F +L   G   +   YN++I A +++G+ + G+ L + M+  G       Y  
Sbjct: 472 MDEAEHIFGNLLEEGVVANGITYNTLIHALLHSGRWQEGLRLANEMVLHGCPLDVVSYNG 531

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+++  + G+V  +  +   M  +  +P   S  +L+    +AG    A      M+  G
Sbjct: 532 LIKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQG 591

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD     ++I    K      ALNLL +L  +   P   TY +L+ W  +++L+++A 
Sbjct: 592 LTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDAS 651

Query: 488 QLLGKISELGEAP 500
            LL K    G  P
Sbjct: 652 MLLDKAVSGGIVP 664



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 131/315 (41%), Gaps = 14/315 (4%)

Query: 258 RDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFES 317
           R Y+ ++   A+ +C  DA  + ++M  + + P   T  V      + G   RA++A   
Sbjct: 146 RSYNAVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVAARALCRLG---RARDALAL 202

Query: 318 LRS---HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
           LR    HG  PD  +Y ++I A V  G      +L+D M+  G       +  ++     
Sbjct: 203 LRGMARHGCVPDAVLYQTVIHALVAQGGVAEAATLLDEMLLMGCAADVNTFNDVVLGLCG 262

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
            G VR A ++ + M +    P++ +   L+    +    D+A +       LG  P+   
Sbjct: 263 LGHVREAARLVDRMMMHGCTPSVVTYGFLLRGLCRTRQADEAYA------MLGRVPEVNV 316

Query: 435 TA--SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               ++I     +  L +A  L   +   G  P   TY +L+  L +L     A ++L +
Sbjct: 317 VMLNTVIRGCLAEGKLARATELYEMMGSKGCPPDVHTYNILMHGLCKLGRCGSAVRMLDE 376

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
           + E G AP      +L   + R G+   A   L  + AK   M    +  II  L   G 
Sbjct: 377 MEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMSAKGFSMNSQGYNGIIYALGKDGK 436

Query: 553 LQDAQRVHGLMEAQG 567
           L +A R+   M++QG
Sbjct: 437 LDEAMRLVQEMKSQG 451



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 103/227 (45%), Gaps = 8/227 (3%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVY-- 330
           + +A R++ +M  +G  P +VT   L+        L R ++A E+    G  P+  V   
Sbjct: 266 VREAARLVDRMMMHGCTPSVVTYGFLLR------GLCRTRQADEAYAMLGRVPEVNVVML 319

Query: 331 NSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRI 390
           N++I   +  G+      L +MM + G       Y  L+    + G    A ++ + M  
Sbjct: 320 NTVIRGCLAEGKLARATELYEMMGSKGCPPDVHTYNILMHGLCKLGRCGSAVRMLDEMEE 379

Query: 391 EEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDK 450
           +   P + + + L+ ++ + G  D AR+  D M   G   + +    +I A GK   LD+
Sbjct: 380 KGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMSAKGFSMNSQGYNGIIYALGKDGKLDE 439

Query: 451 ALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           A+ L+ E++  G +P   TY  ++  L     ++EAE + G + E G
Sbjct: 440 AMRLVQEMKSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFGNLLEEG 486



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 70/371 (18%), Positives = 139/371 (37%), Gaps = 41/371 (11%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           + NV   + +I     E  L  A  + + M   G  PD+ T  +L+H   K G    A  
Sbjct: 313 EVNVVMLNTVIRGCLAEGKLARATELYEMMGSKGCPPDVHTYNILMHGLCKLGRCGSAVR 372

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
             + +   G  P+   Y++++ ++   G      +++D M   G   + + Y  ++ +  
Sbjct: 373 MLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMSAKGFSMNSQGYNGIIYALG 432

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF------------- 420
           + G +  A ++   M+ +  +P + +   ++         D+A   F             
Sbjct: 433 KDGKLDEAMRLVQEMKSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFGNLLEEGVVANGI 492

Query: 421 ----------------------DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
                                 + M+  G   D      +I A  K+  +D+++ LL E+
Sbjct: 493 TYNTLIHALLHSGRWQEGLRLANEMVLHGCPLDVVSYNGLIKALCKEGNVDRSMMLLEEM 552

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
              G +P   +Y +L++ L +   + +A +L  ++   G  P      +L +   + G  
Sbjct: 553 MTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWT 612

Query: 519 KKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKV 576
             AL  L  L    E + PD   +  +I+       L DA  +     + G   +ER   
Sbjct: 613 HAALNLLEKL--PNENVHPDIVTYNILISWHCKVRLLDDASMLLDKAVSGGIVPNERTWG 670

Query: 577 ALISSQTFNRQ 587
            ++  Q F RQ
Sbjct: 671 MMV--QNFVRQ 679


>gi|410109893|gb|AFV61026.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           fucata]
          Length = 414

 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 120/261 (45%), Gaps = 6/261 (2%)

Query: 218 LQPSRIDWINLLD---RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           L+PS + +  L++   RL + +     K A L       Q +V  YS LI+   KE+ ++
Sbjct: 156 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLA---SGVQPDVYTYSVLINGLCKESKID 212

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           DA  +  +M   G+VP+ VT T L+  + K G +D A E ++ + S    PD   YN++I
Sbjct: 213 DANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLI 272

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
                 G  K    L+D M   G++  +  Y  L+    + GD+  A +    M  E  +
Sbjct: 273 YGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTR 332

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
                 T L+    + G    A      M+ +G KPD R    +I  + KK  + K   L
Sbjct: 333 LDDVVYTALISGLCREGXSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKL 392

Query: 455 LLELEKDGFEPGPATYTVLVD 475
           L E+++DG  P   TY VL++
Sbjct: 393 LKEMQRDGHVPSVVTYNVLMN 413



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/313 (20%), Positives = 146/313 (46%), Gaps = 5/313 (1%)

Query: 191 CKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELV--- 247
           C+ + + ++ L+  +       E  E   P+ + + N+L     ++  +  ++A+ V   
Sbjct: 93  CRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDI--RIAQSVFDA 150

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +++   + +V  Y+ L++ + +   L++  R+   M  +G+ PD+ T +VL++   K   
Sbjct: 151 ITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESK 210

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D A E F+ +   G  P+   + ++I  +   G+  L M +   M++  +      Y  
Sbjct: 211 IDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNT 270

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    + GD++ A  + + M ++  +P   + T L++   + GD D A  +   MI+  
Sbjct: 271 LIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQEN 330

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            + DD    ++I+   ++     A  +L E+   G +P   TYT++++   +   + +  
Sbjct: 331 TRLDDVVYTALISGLCREGXSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGS 390

Query: 488 QLLGKISELGEAP 500
           +LL ++   G  P
Sbjct: 391 KLLKEMQRDGHVP 403



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 57/267 (21%), Positives = 110/267 (41%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E  +  ++  ++ L+    K+  +  A+ +   + + G+ P +V+   L++ Y + G+LD
Sbjct: 118 ECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 177

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
                  ++ + G QPD   Y+ +I       +      L D M+  G+  +   +  L+
Sbjct: 178 EGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLI 237

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               + G V  A +I   M  +   P L +   L+    + GD  QA    D M   G K
Sbjct: 238 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLK 297

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     ++I    K   LD A      + ++        YT L+  L R     +AE++
Sbjct: 298 PDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGXSVDAEKM 357

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAG 516
           L ++  +G  P  +    + + + + G
Sbjct: 358 LREMLSVGLKPDARTYTMIINEFCKKG 384


>gi|6723418|emb|CAB66911.1| putative protein [Arabidopsis thaliana]
          Length = 1184

 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 145/312 (46%), Gaps = 3/312 (0%)

Query: 263 LIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG 322
           L+   A  N ++ A  +L +M + G+ PD      L+    K G++  A + FE +R   
Sbjct: 173 LMRRFASANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMREK- 231

Query: 323 FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAG 382
           F P+ + + S++  +   G+      ++  M  +G+E    ++  LL  +A  G +  A 
Sbjct: 232 FPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAY 291

Query: 383 QITNIMRIEEFQPTLESCTLLVEAYGQAGDP-DQARSNFDYMIRLGHKPDDRCTASMIAA 441
            + N MR   F+P +   T+L++A  +     D+A   F  M R G + D     ++I+ 
Sbjct: 292 DLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISG 351

Query: 442 YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
           + K  ++DK  ++L ++ K G  P   TY  ++    + +   E  +L+ K+   G  P 
Sbjct: 352 FCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPD 411

Query: 502 FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHG 561
             I   +  +  + G  K+A++    +EA     G D F  +ING  + GFL +A     
Sbjct: 412 LLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFLIEACNHFK 471

Query: 562 LMEAQG-FAASE 572
            M ++G F+A +
Sbjct: 472 EMVSRGIFSAPQ 483



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 116/267 (43%), Gaps = 3/267 (1%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           E F  N+R ++ L+    +E  L +A+ +L +M E G+ PDIV  T L+  Y+ AG +  
Sbjct: 230 EKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMAD 289

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNA-GQPKLGMSLVDMMITSGIERSEEIYLALL 369
           A +    +R  GF+P+   Y  +I A      +    M +   M   G E     Y AL+
Sbjct: 290 AYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALI 349

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
             F + G +     + + MR +   P+  +   ++ A+ +    ++     + M R G  
Sbjct: 350 SGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCH 409

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD      +I    K   + +A+ L  E+E +G  PG  T+ ++++       + EA   
Sbjct: 410 PDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFLIEACNH 469

Query: 490 LGKISELG--EAPPFKIQVSLCDMYAR 514
             ++   G   AP +    SL +   R
Sbjct: 470 FKEMVSRGIFSAPQYGTLKSLLNNLVR 496


>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
          Length = 748

 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 76/336 (22%), Positives = 149/336 (44%), Gaps = 20/336 (5%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N   Y+ +  +  +   + +A ++L +M   G +PD+++ + +++ Y + G L R  +  
Sbjct: 252 NTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQVGELQRVLKLI 311

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E ++  G +P+   YN +I+     G+      ++  MI+ GI     IY  L+  F + 
Sbjct: 312 EEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKL 371

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G+V  A ++ + M+  +  P   + T ++    Q G   +A   F  M+    +PD+   
Sbjct: 372 GNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTY 431

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I  Y K+  + +A +L  ++ + G  P   TYT L D L +   ++ A +LL ++  
Sbjct: 432 TALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCR 491

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
            G         SL +   +AG   +A++ +  +E                     GF  D
Sbjct: 492 KGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDME-------------------VAGFHPD 532

Query: 556 AQRVHGLMEAQGFAASERLKVALISSQTFNRQRQPT 591
           A     LM+A    + E ++   +  Q  +R+ QPT
Sbjct: 533 AVTYTTLMDAYC-KSREMVRAHELLRQMLDRELQPT 567



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 145/336 (43%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  YS +I+ + +   L+   +++++M   G+ P+  T   ++ +  K G +  A+   
Sbjct: 287 DVISYSTVINGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVL 346

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             + S G  PD  +Y ++I  +   G       L D M    I      Y A++    Q 
Sbjct: 347 REMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQT 406

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G V  A ++ + M  +  +P   + T L++ Y + G   +A S  + M+++G  P+    
Sbjct: 407 GRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTY 466

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++     K   +D A  LL E+ + G E    TY  LV+ L +   I++A +L+  +  
Sbjct: 467 TALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEV 526

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
            G  P      +L D Y ++    +A + L  +  ++ Q     F  ++NG    G L+D
Sbjct: 527 AGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLED 586

Query: 556 AQRVHGLMEAQGFAASERLKVALISSQTFNRQRQPT 591
            +++   M  +G   +     +LI         + T
Sbjct: 587 GEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRAT 622



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 95/215 (44%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LID + KE  +++A  +  +M + G+ P+IVT T L     K G +D A E    + 
Sbjct: 431 YTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMC 490

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G + +   YNS++     AG     + L+  M  +G       Y  L+ ++ +  ++ 
Sbjct: 491 RKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMV 550

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++   M   E QPT+ +  +L+  +  +G  +       +M+  G  P+     S+I
Sbjct: 551 RAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLI 610

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
             Y  +N +     +   +   G  P   TY +L+
Sbjct: 611 KQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILI 645



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/228 (20%), Positives = 98/228 (42%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +  +  + N+  Y+ L++   K   ++ A +++K M   G  PD VT T L+  Y K+  
Sbjct: 489 MCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSRE 548

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           + RA E    +     QP    +N ++  +  +G  + G  L+  M+  GI  +   Y +
Sbjct: 549 MVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNS 608

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L++ +    ++R   +I   M  +   P   +  +L++ + +A +  +A      M+  G
Sbjct: 609 LIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKG 668

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
                    ++I  + K+    +A  L  ++ ++G       Y +  D
Sbjct: 669 FNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIFAD 716



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 79/179 (44%), Gaps = 1/179 (0%)

Query: 402 LLVEAYGQAGDPDQARSNFDYMIRLGHKPD-DRCTASMIAAYGKKNLLDKALNLLLELEK 460
           +  +   +AG  D+AR  FD M+  G     D C   +       + +  AL + +E  +
Sbjct: 187 IFFQVLVEAGMLDEARKLFDKMLNYGLLISVDSCNLFISHLSEDLDGIKIALKVFVEFPE 246

Query: 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKK 520
            G     A+Y ++   L +L  + EA QLL ++   G  P      ++ + Y + G  ++
Sbjct: 247 VGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQVGELQR 306

Query: 521 ALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
            L+ +  ++ K  +  P  +  +I  L   G + +A+RV   M ++G A    +   LI
Sbjct: 307 VLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLI 365



 Score = 39.7 bits (91), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 51/135 (37%), Gaps = 37/135 (27%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E+    N   Y+ LI  +   N +     I + M   G+VPD  T  +L+  + KA N+ 
Sbjct: 596 EKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMK 655

Query: 310 RA-----------------------------------KEAFESLRSHGFQPDKKVYNSMI 334
            A                                   +E FE +R  G   D+++YN  I
Sbjct: 656 EAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYN--I 713

Query: 335 MAYVNAGQPKLGMSL 349
            A +N  + K+ ++L
Sbjct: 714 FADINYDEGKMELTL 728


>gi|240255563|ref|NP_190542.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546755|sp|P0C8A0.1|PP275_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49730
 gi|332645062|gb|AEE78583.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 638

 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 145/312 (46%), Gaps = 3/312 (0%)

Query: 263 LIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG 322
           L+   A  N ++ A  +L +M + G+ PD      L+    K G++  A + FE +R   
Sbjct: 173 LMRRFASANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMREK- 231

Query: 323 FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAG 382
           F P+ + + S++  +   G+      ++  M  +G+E    ++  LL  +A  G +  A 
Sbjct: 232 FPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAY 291

Query: 383 QITNIMRIEEFQPTLESCTLLVEAYGQAGDP-DQARSNFDYMIRLGHKPDDRCTASMIAA 441
            + N MR   F+P +   T+L++A  +     D+A   F  M R G + D     ++I+ 
Sbjct: 292 DLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISG 351

Query: 442 YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
           + K  ++DK  ++L ++ K G  P   TY  ++    + +   E  +L+ K+   G  P 
Sbjct: 352 FCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPD 411

Query: 502 FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHG 561
             I   +  +  + G  K+A++    +EA     G D F  +ING  + GFL +A     
Sbjct: 412 LLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFLIEACNHFK 471

Query: 562 LMEAQG-FAASE 572
            M ++G F+A +
Sbjct: 472 EMVSRGIFSAPQ 483



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 116/267 (43%), Gaps = 3/267 (1%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           E F  N+R ++ L+    +E  L +A+ +L +M E G+ PDIV  T L+  Y+ AG +  
Sbjct: 230 EKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMAD 289

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNA-GQPKLGMSLVDMMITSGIERSEEIYLALL 369
           A +    +R  GF+P+   Y  +I A      +    M +   M   G E     Y AL+
Sbjct: 290 AYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALI 349

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
             F + G +     + + MR +   P+  +   ++ A+ +    ++     + M R G  
Sbjct: 350 SGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCH 409

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD      +I    K   + +A+ L  E+E +G  PG  T+ ++++       + EA   
Sbjct: 410 PDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFLIEACNH 469

Query: 490 LGKISELG--EAPPFKIQVSLCDMYAR 514
             ++   G   AP +    SL +   R
Sbjct: 470 FKEMVSRGIFSAPQYGTLKSLLNNLVR 496


>gi|225429339|ref|XP_002269471.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02860
           [Vitis vinifera]
          Length = 811

 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 126/281 (44%), Gaps = 2/281 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI    + N  E+A  +LK+M   G  PD VT   L+ +Y K+     A E  + + 
Sbjct: 274 YNTLISCCRRGNLYEEAAGVLKEMKLAGFSPDKVTYNALLDVYGKSRRSKEAMEVLQEME 333

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
            +G  P    YNS+I AY   G  +  + L + M+  GI+     Y  LL  F + G  +
Sbjct: 334 GNGCPPSIVTYNSLISAYARDGLLEDALELKNQMVEKGIKPDVFTYTTLLSGFEKAGKDK 393

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A QI   MR E  +P + +   L++ +G  G   +    F+ +      PD     +++
Sbjct: 394 AAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLL 453

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
           + +G+  +  +   +  E+++ GF P   T+  L+    R    ++A  +  ++ E G  
Sbjct: 454 SVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVN 513

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF 540
           P      ++    AR G+ K++ + L   E K  +  P++ 
Sbjct: 514 PDLSSYNAVLAALARGGLWKQSEKVLA--EMKDGRCKPNEL 552



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/338 (22%), Positives = 147/338 (43%), Gaps = 8/338 (2%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +  E  + N+  ++ LI  H       +  ++ + +      PDIVT   L+ ++ + G 
Sbjct: 402 MRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGM 461

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
                  F+ ++  GF P++  +N++I +Y   G     M++   M+ +G+      Y A
Sbjct: 462 DSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNA 521

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPT-LESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           +L + A+ G  + + ++   M+    +P  L  C+LL  AY    + ++  +  + +   
Sbjct: 522 VLAALARGGLWKQSEKVLAEMKDGRCKPNELTYCSLL-HAYANGKEIERMCALAEEIYSG 580

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
             +P      +++    K +LL +     LEL + GF P   T   +V   GR Q++ +A
Sbjct: 581 IIEPRAVLLKTLVLVNSKCDLLMETERAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKA 640

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
            ++L  +   G  P      SL  MY+R+   +++ + L  + AK  +     +  +I  
Sbjct: 641 NEILDCMKRGGFTPSLTTYNSLMYMYSRSANFERSEEILREILAKGIRPDIISYNTVIYA 700

Query: 547 LLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTF 584
               G ++DA RV   M   G A        +I+  TF
Sbjct: 701 YCRNGRMRDASRVLSEMRESGPAPD------IITYNTF 732



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 72/305 (23%), Positives = 140/305 (45%), Gaps = 18/305 (5%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELV--LSEESFQTNVRDYSKLIDAHAKENCLED 275
           + P    +  L+   R  N  LY + A ++  +    F  +   Y+ L+D + K    ++
Sbjct: 267 IAPDSYTYNTLISCCRRGN--LYEEAAGVLKEMKLAGFSPDKVTYNALLDVYGKSRRSKE 324

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A  +L++M  NG  P IVT   L+  Y++ G L+ A E    +   G +PD   Y +++ 
Sbjct: 325 AMEVLQEMEGNGCPPSIVTYNSLISAYARDGLLEDALELKNQMVEKGIKPDVFTYTTLLS 384

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE--- 392
            +  AG+ K  + + + M   G + +   + AL++           G+ T +M++ E   
Sbjct: 385 GFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGN------RGKFTEMMKVFEDIK 438

Query: 393 -FQ--PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD 449
            FQ  P + +   L+  +GQ G   +    F  M R G  P+     ++I++Y +    D
Sbjct: 439 TFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFD 498

Query: 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQ-VSL 508
           +A+ +   + + G  P  ++Y  ++  L R  L  ++E++L ++ + G   P ++   SL
Sbjct: 499 QAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKD-GRCKPNELTYCSL 557

Query: 509 CDMYA 513
              YA
Sbjct: 558 LHAYA 562



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/351 (21%), Positives = 148/351 (42%), Gaps = 42/351 (11%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK--- 304
           L ++ F  +V  Y+ +I A        +A  + KKM E G  P ++T  V++++Y K   
Sbjct: 191 LCKDGFDVDVYAYTSMITAFTSNGRYREAVMVFKKMEEVGCKPTLITYNVILNVYGKMGM 250

Query: 305 -----AGNLDRAKEA----------------------------FESLRSHGFQPDKKVYN 331
                 G +DR K A                             + ++  GF PDK  YN
Sbjct: 251 PWNKMVGLVDRMKSAGIAPDSYTYNTLISCCRRGNLYEEAAGVLKEMKLAGFSPDKVTYN 310

Query: 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391
           +++  Y  + + K  M ++  M  +G   S   Y +L+ ++A+ G +  A ++ N M  +
Sbjct: 311 ALLDVYGKSRRSKEAMEVLQEMEGNGCPPSIVTYNSLISAYARDGLLEDALELKNQMVEK 370

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
             +P + + T L+  + +AG    A   F+ M   G KP+     ++I  +G +    + 
Sbjct: 371 GIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEM 430

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
           + +  +++     P   T+  L+   G+  + +E   +  ++   G  P      +L   
Sbjct: 431 MKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISS 490

Query: 512 YARAGIEKKALQALG-FLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRV 559
           Y+R G   +A+      LEA    + PD   +  ++  L  GG  + +++V
Sbjct: 491 YSRCGSFDQAMAVYKRMLEAG---VNPDLSSYNAVLAALARGGLWKQSEKV 538



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 113/259 (43%), Gaps = 3/259 (1%)

Query: 241 FKVAELVLSEES---FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTV 297
           +K +E VL+E      + N   Y  L+ A+A    +E    + +++    I P  V    
Sbjct: 532 WKQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAVLLKT 591

Query: 298 LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG 357
           LV + SK   L   + AF  LR  GF PD    N+M+  Y           ++D M   G
Sbjct: 592 LVLVNSKCDLLMETERAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGG 651

Query: 358 IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
              S   Y +L+  +++  +   + +I   +  +  +P + S   ++ AY + G    A 
Sbjct: 652 FTPSLTTYNSLMYMYSRSANFERSEEILREILAKGIRPDIISYNTVIYAYCRNGRMRDAS 711

Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
                M   G  PD     + IA+Y   ++  +A++++  + K G +P  +TY  +VDW 
Sbjct: 712 RVLSEMRESGPAPDIITYNTFIASYAADSMFVEAIDVVCYMIKHGCKPNQSTYNSIVDWY 771

Query: 478 GRLQLINEAEQLLGKISEL 496
            +L   +EA   +  + +L
Sbjct: 772 CKLNRRDEASMFVNNLRKL 790



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 124/311 (39%), Gaps = 5/311 (1%)

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A  +L  + ++G   D+   T ++  ++  G    A   F+ +   G +P    YN ++ 
Sbjct: 184 AASLLHNLCKDGFDVDVYAYTSMITAFTSNGRYREAVMVFKKMEEVGCKPTLITYNVILN 243

Query: 336 AYVNAGQPKLGM-SLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
            Y   G P   M  LVD M ++GI      Y  L+    +      A  +   M++  F 
Sbjct: 244 VYGKMGMPWNKMVGLVDRMKSAGIAPDSYTYNTLISCCRRGNLYEEAAGVLKEMKLAGFS 303

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P   +   L++ YG++    +A      M   G  P      S+I+AY +  LL+ AL L
Sbjct: 304 PDKVTYNALLDVYGKSRRSKEAMEVLQEMEGNGCPPSIVTYNSLISAYARDGLLEDALEL 363

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
             ++ + G +P   TYT L+    +      A Q+  ++   G  P      +L  M+  
Sbjct: 364 KNQMVEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGN 423

Query: 515 AGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572
            G   + ++   F + K  Q  PD   +  +++     G   +   V   M+  GF    
Sbjct: 424 RGKFTEMMKV--FEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPER 481

Query: 573 RLKVALISSQT 583
                LISS +
Sbjct: 482 DTFNTLISSYS 492



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 100/221 (45%), Gaps = 8/221 (3%)

Query: 309 DRAKEAFESLRSHGFQPDKKVYNSMIMAYV-----NAGQPKLGMSLVDMMITSGIERSEE 363
           D A   FE +R+   +  + + N  I+A +       G+     SL+  +   G +    
Sbjct: 144 DTALRVFEWVRNR--KESELLLNGSIIAVIISILGKGGRVSAAASLLHNLCKDGFDVDVY 201

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDP-DQARSNFDY 422
            Y +++ +F   G  R A  +   M     +PTL +  +++  YG+ G P ++     D 
Sbjct: 202 AYTSMITAFTSNGRYREAVMVFKKMEEVGCKPTLITYNVILNVYGKMGMPWNKMVGLVDR 261

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
           M   G  PD     ++I+   + NL ++A  +L E++  GF P   TY  L+D  G+ + 
Sbjct: 262 MKSAGIAPDSYTYNTLISCCRRGNLYEEAAGVLKEMKLAGFSPDKVTYNALLDVYGKSRR 321

Query: 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
             EA ++L ++   G  P      SL   YAR G+ + AL+
Sbjct: 322 SKEAMEVLQEMEGNGCPPSIVTYNSLISAYARDGLLEDALE 362



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/269 (18%), Positives = 119/269 (44%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++ LI ++++    + A  + K+M E G+ PD+ +   ++   ++ G   ++++    ++
Sbjct: 484 FNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMK 543

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
               +P++  Y S++ AY N  + +   +L + + +  IE    +   L+   ++C  + 
Sbjct: 544 DGRCKPNELTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLM 603

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
              +    +R   F P + +   +V  YG+     +A    D M R G  P      S++
Sbjct: 604 ETERAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLM 663

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             Y +    +++  +L E+   G  P   +Y  ++    R   + +A ++L ++ E G A
Sbjct: 664 YMYSRSANFERSEEILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPA 723

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFL 528
           P      +    YA   +  +A+  + ++
Sbjct: 724 PDIITYNTFIASYAADSMFVEAIDVVCYM 752


>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
          Length = 577

 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 71/321 (22%), Positives = 144/321 (44%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  +++  +K    E    +L+ M +    PD+ T ++++    K  NLD A      ++
Sbjct: 171 YGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDINLDAAINLLNEMK 230

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
                P+   YNS+I      GQ +   +L+  M+   I  +   +  L+    + G V 
Sbjct: 231 QKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDGLCKEGKVE 290

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++   M  +  +P + + + +++ Y   G  D+AR  F+ +   G KP+    + +I
Sbjct: 291 DADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILI 350

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             Y KK  L KA+ L  E+ + G +P   TY+ ++  L  +  I +A+++  ++  +G  
Sbjct: 351 NGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRVGPT 410

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P   +  +L   Y + G+ ++A+     LE  +E      +  +INGL     +++A  +
Sbjct: 411 PDICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNISFYTVVINGLCKNDRVREAHAI 470

Query: 560 HGLMEAQGFAASERLKVALIS 580
              + + G     R    +I+
Sbjct: 471 FEKLPSIGLIPDVRTYNVMIT 491



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 119/266 (44%), Gaps = 35/266 (13%)

Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311
           +   NV  +S LID   KE  +EDA+ +++ M E G+ PDI+T + ++  Y   G +DRA
Sbjct: 268 NINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRA 327

Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
           +  F  LR  G +P+   Y+ +I  Y         M L   +   G++     Y  +L  
Sbjct: 328 RRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHG 387

Query: 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
                                          L+E  G+ GD   A+  FD M+R+G  PD
Sbjct: 388 -------------------------------LIEV-GRIGD---AKKIFDEMLRVGPTPD 412

Query: 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
               ++++  Y K  L+++A+ L  +LE++  +   + YTV+++ L +   + EA  +  
Sbjct: 413 ICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNISFYTVVINGLCKNDRVREAHAIFE 472

Query: 492 KISELGEAPPFKIQVSLCDMYARAGI 517
           K+  +G  P  +    +   + R G+
Sbjct: 473 KLPSIGLIPDVRTYNVMITGFCREGL 498



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/251 (20%), Positives = 110/251 (43%), Gaps = 35/251 (13%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           VL ++  + N+  YS LI+ + K+  L  A ++  ++++ G+ PD VT + ++H   + G
Sbjct: 333 VLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVG 392

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            +  AK+ F+ +   G  PD  ++++++  Y      K G+    M++ S +ER+ E   
Sbjct: 393 RIGDAKKIFDEMLRVGPTPDICLHSTLLFGYF-----KYGLVEEAMLLFSKLERNRE--- 444

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
                                         +   T+++    +     +A + F+ +  +
Sbjct: 445 ---------------------------DTNISFYTVVINGLCKNDRVREAHAIFEKLPSI 477

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G  PD R    MI  + ++ L D+   +L ++E +G      TY V++    R   I+E 
Sbjct: 478 GLIPDVRTYNVMITGFCREGLFDEVKGILRKMEDNGCPANNITYNVIMQGFFRSNKISEI 537

Query: 487 EQLLGKISELG 497
              + +++  G
Sbjct: 538 VSFMKEMAGRG 548



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 61/298 (20%), Positives = 119/298 (39%), Gaps = 1/298 (0%)

Query: 271 NCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVY 330
           +CL+DA  +  +M     +P ++  + L        +       F  +R  G      + 
Sbjct: 41  SCLDDAVSLFHRMVRMKPLPSVIDFSKLFKTMINMKHYSAVVSLFREMRILGIPISDSIL 100

Query: 331 NSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS-FAQCGDVRGAGQITNIMR 389
           N +  +Y    +     S++ + + +GI  +   +  LL   FA+            ++R
Sbjct: 101 NIVTNSYCLRHRIDCAFSVLPIYLKTGIPFNVVTFNTLLGGLFAENKVTDAVVLFKKLVR 160

Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD 449
            +  +P       ++    + G  ++  S    M +   KPD R  + +I A  K   LD
Sbjct: 161 EKICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDINLD 220

Query: 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLC 509
            A+NLL E+++    P   TY  L+D L +L    + + LL ++  L   P       L 
Sbjct: 221 AAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILI 280

Query: 510 DMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
           D   + G  + A + +  +  K  +     +  I++G    G +  A+RV  ++  +G
Sbjct: 281 DGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKG 338


>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 918

 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 147/334 (44%), Gaps = 4/334 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +  +  + NV  Y+ LI        L+ A  +  +M+ +G+ P+ VT   L+++  +   
Sbjct: 346 MKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRR 405

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A      +  +G  P+   YN MI  Y   G PK  M +++ M+  G   +   Y  
Sbjct: 406 IKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNT 465

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           +++ +   G+   A +I ++MR    +P   S T L+  + +    + A   F+ M+  G
Sbjct: 466 IIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDG 525

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P++    ++I  Y K   LD A +LL  +++ G  P   TY VL+  L +    + AE
Sbjct: 526 LCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAE 585

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIIN 545
           +L   + E G  P      ++ D   + G    AL+   F +  ++   P+   +  +I 
Sbjct: 586 ELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEM--FNKMIEQGCLPNLLTYSSLIR 643

Query: 546 GLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
            L   G +++A+ +   +E  G    E   V +I
Sbjct: 644 ALGQEGKVEEAENLFAELERHGLIPDEITYVKMI 677



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 121/288 (42%), Gaps = 4/288 (1%)

Query: 215 KELLQPSRIDWINLLDRLREQN--TQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC 272
           KE  +P+ + +  L++ L +     + +  + E++L            +  I A     C
Sbjct: 278 KEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMIL--HGILPTAHTCTGPIIALCDMGC 335

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
            EDA R+   M   G  P++ T T L+     +G L  A   F  +   G  P+   YN+
Sbjct: 336 YEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNA 395

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I   V   + K    ++++M  +G   +   Y  +++ +   GD + A  + N M    
Sbjct: 396 LINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRG 455

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
               L +   +++ Y  +G+   A    D M   G KPD+     +I  + K + ++ A 
Sbjct: 456 HSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAF 515

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
            L  E+  DG  P   TYT L+D   + + ++ A  LL  +   G  P
Sbjct: 516 GLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRP 563



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 116/262 (44%), Gaps = 3/262 (1%)

Query: 242 KVAELVLS---EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVL 298
           K A LV++   +     N+  Y+ +I  +        A RIL  M + G  PD  + T L
Sbjct: 442 KKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTEL 501

Query: 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
           +  + K   ++ A   F  +   G  P++  Y ++I  Y    +     SL++ M  SG 
Sbjct: 502 ICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGC 561

Query: 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418
             + + Y  L+    +  +  GA ++  +M  E   P + + T +++   + G    A  
Sbjct: 562 RPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALE 621

Query: 419 NFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLG 478
            F+ MI  G  P+    +S+I A G++  +++A NL  ELE+ G  P   TY  +++   
Sbjct: 622 MFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYI 681

Query: 479 RLQLINEAEQLLGKISELGEAP 500
               +  A   LG++ + G  P
Sbjct: 682 MSGKVEHAFNFLGRMIKAGCQP 703



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 73/337 (21%), Positives = 139/337 (41%), Gaps = 15/337 (4%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +++E  + N   YS LI+       + +A  ++++M  +GI+P   T T  +      G 
Sbjct: 276 MAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGC 335

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            + A   F  +++ G +P+   Y ++I     +G  K+ + L   M   G+  +   Y A
Sbjct: 336 YEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNA 395

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    +   ++ A  + N+M      P + +   +++ Y   GDP +A    + M++ G
Sbjct: 396 LINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRG 455

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
           H  +     ++I  Y        AL +L  +   G +P   +YT L+    ++  +  A 
Sbjct: 456 HSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAF 515

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
            L  ++ + G  P      +L D Y +   ++K   A   LE  K   G     +  N L
Sbjct: 516 GLFNEMVDDGLCPNEVTYTALIDGYCK---DEKLDTATSLLEHMKRS-GCRPNVQTYNVL 571

Query: 548 LAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTF 584
                      +HGL +   F+ +E L   +I    F
Sbjct: 572 -----------IHGLTKQNNFSGAEELCKVMIEEGIF 597



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 70/326 (21%), Positives = 122/326 (37%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           +LS+   +  +  YS L+   ++            +M   G+ P+++    +++   K G
Sbjct: 170 MLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDG 229

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           N+  A+   + +      PD   Y SMI+ +         + + + M   G E +   Y 
Sbjct: 230 NVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYS 289

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+      G V  A  +   M +    PT  +CT  + A    G  + A   F  M   
Sbjct: 290 TLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNK 349

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G +P+     ++I+      LL  A+ L   + +DG  P   TY  L++ L   + I  A
Sbjct: 350 GCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYA 409

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
             +L  +   G +P       +   Y   G  KKA+  +  +  +        +  II G
Sbjct: 410 FVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKG 469

Query: 547 LLAGGFLQDAQRVHGLMEAQGFAASE 572
               G    A R+  LM   G    E
Sbjct: 470 YCDSGNTTSALRILDLMRDGGCKPDE 495



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 76/368 (20%), Positives = 154/368 (41%), Gaps = 6/368 (1%)

Query: 220 PSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERI 279
           P+ + +  L++ L E     Y  V   ++       N+  Y+++I  +      + A  +
Sbjct: 388 PNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLV 447

Query: 280 LKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339
           +  M + G   ++VT   ++  Y  +GN   A    + +R  G +PD+  Y  +I  +  
Sbjct: 448 MNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCK 507

Query: 340 AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLES 399
             + +    L + M+  G+  +E  Y AL+  + +   +  A  +   M+    +P +++
Sbjct: 508 ISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQT 567

Query: 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELE 459
             +L+    +  +   A      MI  G  P+     +MI    K      AL +  ++ 
Sbjct: 568 YNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMI 627

Query: 460 KDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEK 519
           + G  P   TY+ L+  LG+   + EAE L  ++   G  P     V + + Y  +G  +
Sbjct: 628 EQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVE 687

Query: 520 KALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLME-----AQGFAASERL 574
            A   LG +     Q     +  +I GL     L D QR+  L +     + G+  +++ 
Sbjct: 688 HAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLAD-QRLAALPDVVPNCSFGYQTTDQD 746

Query: 575 KVALISSQ 582
            V+++S++
Sbjct: 747 AVSVMSAK 754



 Score = 45.8 bits (107), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 52/262 (19%), Positives = 107/262 (40%), Gaps = 4/262 (1%)

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           + R     + L   G +     Y+++++     G     M     M++ G++ +  IY A
Sbjct: 161 MARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNA 220

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++ +  + G+V  A  I   +   E  P   + T ++  + +  D D A   F+ M + G
Sbjct: 221 VINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEG 280

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            +P+    +++I        +++A +L+ E+   G  P   T T  +  L  +    +A 
Sbjct: 281 CEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAW 340

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIIN 545
           +L   +   G  P      +L      +G+ K A+    F    ++ + P+   +  +IN
Sbjct: 341 RLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGL--FHRMSRDGVFPNTVTYNALIN 398

Query: 546 GLLAGGFLQDAQRVHGLMEAQG 567
            L+    ++ A  V  LM   G
Sbjct: 399 ILVENRRIKYAFVVLNLMGRNG 420


>gi|224112321|ref|XP_002316152.1| predicted protein [Populus trichocarpa]
 gi|222865192|gb|EEF02323.1| predicted protein [Populus trichocarpa]
          Length = 785

 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 134/270 (49%), Gaps = 7/270 (2%)

Query: 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV 350
           D+ T  +++   +K+G LD A + F+ ++   F+P   +++S++ +   AG+ +  M + 
Sbjct: 261 DVSTYELMIPSLAKSGRLDAAFKLFQEMKERNFRPSLGIFSSLVDSMGKAGRLETSMKVY 320

Query: 351 DMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410
             M   G+  S  +Y++L+ S+ + G +  A ++ + M+I  F+P     TL++E++ ++
Sbjct: 321 MEMQGLGLRPSAIMYVSLIESYTKAGKLDAALRLWDEMKIAGFRPNFGLYTLIIESHAKS 380

Query: 411 GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATY 470
           G  D A S F  M + G  P     +S++  +     +D A+ L   +   G  PG +TY
Sbjct: 381 GKLDIAMSIFRDMEKAGFLPTPSTYSSLLEMHAASGQVDAAMKLYNSMTNAGLRPGLSTY 440

Query: 471 TVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCD---MYARAGIEKKALQALGF 527
           T L+  L   +L++ A ++L ++  +G    F + VS  D   +Y + G    +L+ L F
Sbjct: 441 TALLTLLAHKKLVDVAAKILLEMKAMG----FSVDVSASDVLMVYIKDGSVDLSLRWLRF 496

Query: 528 LEAKKEQMGPDDFERIINGLLAGGFLQDAQ 557
           + +   +       ++    +  G  + A+
Sbjct: 497 MSSSGIRTNNFIIRQLFESCMKNGLYESAK 526



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 114/244 (46%), Gaps = 2/244 (0%)

Query: 236 NTQLYFKVAELVLSEESFQT--NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIV 293
           N  L +K  E+  + E+     +V  Y  +I + AK   L+ A ++ ++M E    P + 
Sbjct: 239 NKGLPYKAFEIYETMEAAHCSLDVSTYELMIPSLAKSGRLDAAFKLFQEMKERNFRPSLG 298

Query: 294 TSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMM 353
             + LV    KAG L+ + + +  ++  G +P   +Y S+I +Y  AG+    + L D M
Sbjct: 299 IFSSLVDSMGKAGRLETSMKVYMEMQGLGLRPSAIMYVSLIESYTKAGKLDAALRLWDEM 358

Query: 354 ITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDP 413
             +G   +  +Y  ++ S A+ G +  A  I   M    F PT  + + L+E +  +G  
Sbjct: 359 KIAGFRPNFGLYTLIIESHAKSGKLDIAMSIFRDMEKAGFLPTPSTYSSLLEMHAASGQV 418

Query: 414 DQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVL 473
           D A   ++ M   G +P      +++     K L+D A  +LLE++  GF    +   VL
Sbjct: 419 DAAMKLYNSMTNAGLRPGLSTYTALLTLLAHKKLVDVAAKILLEMKAMGFSVDVSASDVL 478

Query: 474 VDWL 477
           + ++
Sbjct: 479 MVYI 482



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 128/289 (44%), Gaps = 6/289 (2%)

Query: 245 ELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK 304
           E+V       T    Y++++   AK   LE +    KK+ ++G   D  T  +L+ ++  
Sbjct: 180 EMVCDSIKSATQFSAYNRVLKYLAKAEKLEVSFCCFKKVQDSGCKIDTETYNILMKLFLN 239

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
            G   +A E +E++ +     D   Y  MI +   +G+      L   M       S  I
Sbjct: 240 KGLPYKAFEIYETMEAAHCSLDVSTYELMIPSLAKSGRLDAAFKLFQEMKERNFRPSLGI 299

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
           + +L+ S  + G +  + ++   M+    +P+      L+E+Y +AG  D A   +D M 
Sbjct: 300 FSSLVDSMGKAGRLETSMKVYMEMQGLGLRPSAIMYVSLIESYTKAGKLDAALRLWDEMK 359

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
             G +P+      +I ++ K   LD A+++  ++EK GF P P+TY+ L++       ++
Sbjct: 360 IAGFRPNFGLYTLIIESHAKSGKLDIAMSIFRDMEKAGFLPTPSTYSSLLEMHAASGQVD 419

Query: 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKA------LQALGF 527
            A +L   ++  G  P      +L  + A   +   A      ++A+GF
Sbjct: 420 AAMKLYNSMTNAGLRPGLSTYTALLTLLAHKKLVDVAAKILLEMKAMGF 468


>gi|15238925|ref|NP_199046.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75154282|sp|Q8L844.1|PP413_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g42310, mitochondrial; Flags: Precursor
 gi|21539517|gb|AAM53311.1| maize crp1 protein-like [Arabidopsis thaliana]
 gi|332007411|gb|AED94794.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 709

 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 90/382 (23%), Positives = 161/382 (42%), Gaps = 35/382 (9%)

Query: 192 KLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEE 251
           +L+ D I+   K  DPS  L    +LL  +             Q T L  K A LV    
Sbjct: 270 QLVNDIIMGFAKSGDPSKAL----QLLGMA-------------QATGLSAKTATLV---- 308

Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311
                      +I A A      +AE + +++ ++GI P       L+  Y K G L  A
Sbjct: 309 ----------SIISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDA 358

Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
           +     +   G  PD+  Y+ +I AYVNAG+ +    ++  M    ++ +  ++  LL  
Sbjct: 359 ESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAG 418

Query: 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
           F   G+ +   Q+   M+    +P  +   ++++ +G+    D A + FD M+  G +PD
Sbjct: 419 FRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPD 478

Query: 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
                ++I  + K      A  +   +E+ G  P   TY ++++  G  +  ++ ++LLG
Sbjct: 479 RVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLG 538

Query: 492 KISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLA 549
           K+   G  P      +L D+Y ++G    A++ L   E K   + P    +  +IN    
Sbjct: 539 KMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLE--EMKSVGLKPSSTMYNALINAYAQ 596

Query: 550 GGFLQDAQRVHGLMEAQGFAAS 571
            G  + A     +M + G   S
Sbjct: 597 RGLSEQAVNAFRVMTSDGLKPS 618



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 119/242 (49%), Gaps = 18/242 (7%)

Query: 216 ELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVR--------DYSKLIDAH 267
           E ++P R+ W  L+D         + K    +++EE F+   R         Y+ +I+++
Sbjct: 473 EGIEPDRVTWNTLID--------CHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSY 524

Query: 268 AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK 327
             +   +D +R+L KM   GI+P++VT T LV +Y K+G  + A E  E ++S G +P  
Sbjct: 525 GDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSS 584

Query: 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNI 387
            +YN++I AY   G  +  ++   +M + G++ S     +L+ +F +      A  +   
Sbjct: 585 TMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQY 644

Query: 388 MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA--YGKK 445
           M+    +P + + T L++A  +     +    ++ MI  G KPD +  + + +A  Y K+
Sbjct: 645 MKENGVKPDVVTYTTLMKALIRVDKFQKVPVVYEEMIMSGCKPDRKARSMLRSALRYMKQ 704

Query: 446 NL 447
            L
Sbjct: 705 TL 706



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/345 (20%), Positives = 139/345 (40%), Gaps = 37/345 (10%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK--EAFES 317
           Y+ LI A A+ N +E A  ++ KM ++G   D V  ++++   +++  +D       ++ 
Sbjct: 200 YNALIGACARNNDIEKALNLIAKMRQDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYKE 259

Query: 318 LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDM------------------------- 352
           +     + D ++ N +IM +  +G P   + L+ M                         
Sbjct: 260 IERDKLELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGR 319

Query: 353 ----------MITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402
                     +  SGI+     Y ALL+ + + G ++ A  + + M      P   + +L
Sbjct: 320 TLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSL 379

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           L++AY  AG  + AR     M     +P+    + ++A +  +    K   +L E++  G
Sbjct: 380 LIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIG 439

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522
            +P    Y V++D  G+   ++ A     ++   G  P      +L D + + G    A 
Sbjct: 440 VKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAE 499

Query: 523 QALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
           +    +E +        +  +IN         D +R+ G M++QG
Sbjct: 500 EMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQG 544



 Score = 42.7 bits (99), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 69/147 (46%), Gaps = 6/147 (4%)

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
           ++I A  + N ++KALNL+ ++ +DG++     Y++++  L R   I+    +L ++ + 
Sbjct: 202 ALIGACARNNDIEKALNLIAKMRQDGYQSDFVNYSLVIQSLTRSNKIDSV--MLLRLYKE 259

Query: 497 GEAPPFKIQVSLCD----MYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
            E    ++ V L +     +A++G   KALQ LG  +A            II+ L   G 
Sbjct: 260 IERDKLELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGR 319

Query: 553 LQDAQRVHGLMEAQGFAASERLKVALI 579
             +A+ +   +   G     R   AL+
Sbjct: 320 TLEAEALFEELRQSGIKPRTRAYNALL 346


>gi|302776756|ref|XP_002971525.1| hypothetical protein SELMODRAFT_95815 [Selaginella moellendorffii]
 gi|300160657|gb|EFJ27274.1| hypothetical protein SELMODRAFT_95815 [Selaginella moellendorffii]
          Length = 356

 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 118/242 (48%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
            +R Y+ +I A  KE  ++  E ++++M    + PD+ +   L+  Y+ +   +R  + F
Sbjct: 97  TLRSYNVVICAFTKEGSIDKVEEVIREMIRQELRPDLFSFNALIAAYAMSRKPERGLQVF 156

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
            ++++ G  PD   Y ++I  +  +   K  + + + M+ +  +    +Y  L+  + + 
Sbjct: 157 SNMKAAGVLPDIVTYTTLIQMFSRSAMHKEAIEMFEEMVVNKCQPDFFVYSLLVSVYGKA 216

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G V  A  I + +++E  +P + + T L+ A+   G  +++R +F  M   G + D    
Sbjct: 217 GLVADALLIFHRLQLEGHRPNIVTYTSLISAHLHKGLLEESRKHFSQMEAYGCRADVHLL 276

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            +MI AY K  +++ A NLL  L   G  P  A+Y ++V+       ++EA      +SE
Sbjct: 277 NTMIDAYAKAGMVNDAANLLHRLTAQGVCPNRASYAIIVEGFLHAGHVDEALAAYASMSE 336

Query: 496 LG 497
            G
Sbjct: 337 AG 338



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 118/248 (47%)

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
           +R+  ++   G+   + +  V++  ++K G++D+ +E    +     +PD   +N++I A
Sbjct: 83  DRLFLEIKSRGVALTLRSYNVVICAFTKEGSIDKVEEVIREMIRQELRPDLFSFNALIAA 142

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           Y  + +P+ G+ +   M  +G+      Y  L++ F++    + A ++   M + + QP 
Sbjct: 143 YAMSRKPERGLQVFSNMKAAGVLPDIVTYTTLIQMFSRSAMHKEAIEMFEEMVVNKCQPD 202

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
               +LLV  YG+AG    A   F  +   GH+P+     S+I+A+  K LL+++     
Sbjct: 203 FFVYSLLVSVYGKAGLVADALLIFHRLQLEGHRPNIVTYTSLISAHLHKGLLEESRKHFS 262

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
           ++E  G          ++D   +  ++N+A  LL +++  G  P       + + +  AG
Sbjct: 263 QMEAYGCRADVHLLNTMIDAYAKAGMVNDAANLLHRLTAQGVCPNRASYAIIVEGFLHAG 322

Query: 517 IEKKALQA 524
              +AL A
Sbjct: 323 HVDEALAA 330



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 141/328 (42%), Gaps = 11/328 (3%)

Query: 249 SEESFQ-------TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM 301
           +EE FQ         +R Y+ +I A+ +    +DA  +  +M   GI PD VT  +LV  
Sbjct: 15  AEELFQWIKLQDWDKLRPYNAMIAAYYQAKRPKDAWDVYYQMLAEGIDPDDVTYDILVSG 74

Query: 302 YSKAGN-LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
             K G  +DR    F  ++S G     + YN +I A+   G       ++  MI   +  
Sbjct: 75  SGKNGYPIDRL---FLEIKSRGVALTLRSYNVVICAFTKEGSIDKVEEVIREMIRQELRP 131

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
               + AL+ ++A         Q+ + M+     P + + T L++ + ++    +A   F
Sbjct: 132 DLFSFNALIAAYAMSRKPERGLQVFSNMKAAGVLPDIVTYTTLIQMFSRSAMHKEAIEMF 191

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
           + M+    +PD    + +++ YGK  L+  AL +   L+ +G  P   TYT L+      
Sbjct: 192 EEMVVNKCQPDFFVYSLLVSVYGKAGLVADALLIFHRLQLEGHRPNIVTYTSLISAHLHK 251

Query: 481 QLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF 540
            L+ E+ +   ++   G      +  ++ D YA+AG+   A   L  L A+        +
Sbjct: 252 GLLEESRKHFSQMEAYGCRADVHLLNTMIDAYAKAGMVNDAANLLHRLTAQGVCPNRASY 311

Query: 541 ERIINGLLAGGFLQDAQRVHGLMEAQGF 568
             I+ G L  G + +A   +  M   GF
Sbjct: 312 AIIVEGFLHAGHVDEALAAYASMSEAGF 339



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 125/280 (44%), Gaps = 5/280 (1%)

Query: 303 SKAGNLDRAKEAFESLRSHGFQPDK-KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS 361
           S+A  ++ A+E F+ ++   +  DK + YN+MI AY  A +PK    +   M+  GI+  
Sbjct: 7   SRARLIEDAEELFQWIKLQDW--DKLRPYNAMIAAYYQAKRPKDAWDVYYQMLAEGIDPD 64

Query: 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421
           +  Y  L+    + G      ++   ++      TL S  +++ A+ + G  D+      
Sbjct: 65  DVTYDILVSGSGKNG--YPIDRLFLEIKSRGVALTLRSYNVVICAFTKEGSIDKVEEVIR 122

Query: 422 YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ 481
            MIR   +PD     ++IAAY      ++ L +   ++  G  P   TYT L+    R  
Sbjct: 123 EMIRQELRPDLFSFNALIAAYAMSRKPERGLQVFSNMKAAGVLPDIVTYTTLIQMFSRSA 182

Query: 482 LINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFE 541
           +  EA ++  ++      P F +   L  +Y +AG+   AL     L+ +  +     + 
Sbjct: 183 MHKEAIEMFEEMVVNKCQPDFFVYSLLVSVYGKAGLVADALLIFHRLQLEGHRPNIVTYT 242

Query: 542 RIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
            +I+  L  G L+++++    MEA G  A   L   +I +
Sbjct: 243 SLISAHLHKGLLEESRKHFSQMEAYGCRADVHLLNTMIDA 282



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/225 (21%), Positives = 101/225 (44%), Gaps = 2/225 (0%)

Query: 242 KVAELV--LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLV 299
           KV E++  +  +  + ++  ++ LI A+A     E   ++   M   G++PDIVT T L+
Sbjct: 116 KVEEVIREMIRQELRPDLFSFNALIAAYAMSRKPERGLQVFSNMKAAGVLPDIVTYTTLI 175

Query: 300 HMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
            M+S++     A E FE +  +  QPD  VY+ ++  Y  AG     + +   +   G  
Sbjct: 176 QMFSRSAMHKEAIEMFEEMVVNKCQPDFFVYSLLVSVYGKAGLVADALLIFHRLQLEGHR 235

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
            +   Y +L+ +    G +  + +  + M     +  +     +++AY +AG  + A + 
Sbjct: 236 PNIVTYTSLISAHLHKGLLEESRKHFSQMEAYGCRADVHLLNTMIDAYAKAGMVNDAANL 295

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
              +   G  P+    A ++  +     +D+AL     + + GF+
Sbjct: 296 LHRLTAQGVCPNRASYAIIVEGFLHAGHVDEALAAYASMSEAGFK 340



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 68/145 (46%), Gaps = 17/145 (11%)

Query: 187 ITGKCKLITDKILSLEKE--EDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVA 244
           + GK  L+ D +L   +   E   P +  +  L+         LL+  R+  +Q+     
Sbjct: 212 VYGKAGLVADALLIFHRLQLEGHRPNIVTYTSLISAHLHK--GLLEESRKHFSQM----- 264

Query: 245 ELVLSEESF--QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMY 302
                 E++  + +V   + +IDA+AK   + DA  +L ++   G+ P+  +  ++V  +
Sbjct: 265 ------EAYGCRADVHLLNTMIDAYAKAGMVNDAANLLHRLTAQGVCPNRASYAIIVEGF 318

Query: 303 SKAGNLDRAKEAFESLRSHGFQPDK 327
             AG++D A  A+ S+   GF+ +K
Sbjct: 319 LHAGHVDEALAAYASMSEAGFKDEK 343


>gi|255570422|ref|XP_002526170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534547|gb|EEF36246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 504

 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 149/340 (43%), Gaps = 14/340 (4%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +  +  + NV  Y+ LI A  +    ++A R   +M   GI+PD+VT T L+   SK G 
Sbjct: 140 MVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSKKGK 199

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A + FE +   G  P+   YNS++       Q    + L ++M+  GI+     Y  
Sbjct: 200 VQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNT 259

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+  +   G    A  +   M+ EE  P++ + T+L++A  Q G    A+  F+ M   G
Sbjct: 260 LINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNNMQICG 319

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P       ++    K   +++A+++   L+   ++P    Y++L+  + + +    A 
Sbjct: 320 QSPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGMFQARRWESAM 379

Query: 488 QLLGKISELGEAP---PFKIQVS-LCDMYARAGIEKKALQALGFLEAKKEQMGPDD---F 540
           ++  +I  +G  P    + I ++ LC        E K L+A       +E     D   F
Sbjct: 380 EIFDEIPTVGLVPNIVTYNIMINGLCK-------EGKLLEAERLFVQMEESGCEQDEISF 432

Query: 541 ERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
             II G L    +Q A      M  + F+ ++ + + L++
Sbjct: 433 NFIIRGFLQENQVQKAMEFLKRMREKNFSPNDSVTLMLVN 472



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/293 (21%), Positives = 124/293 (42%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N   Y  +ID+  K+       ++ ++M   GI P+++  + L++   + G L  A   F
Sbjct: 78  NFFTYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLINGLCRVGKLREAVNLF 137

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + + S G + +   YNS+I A    G  K        M+  GI      +  L+   ++ 
Sbjct: 138 DEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSKK 197

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G V+ A +I  +M  +   P + +   L+         D A   F+ M+  G K D    
Sbjct: 198 GKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISY 257

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I  Y      ++A+ L  +++ +   P   TYT+L+  L +   I  A++L   +  
Sbjct: 258 NTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNNMQI 317

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLL 548
            G++P       L D   + G  ++A+     L++ K +     +  +I G+ 
Sbjct: 318 CGQSPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGMF 370



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/295 (20%), Positives = 133/295 (45%), Gaps = 2/295 (0%)

Query: 220 PSRIDWINLLDRLREQN-TQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAER 278
           P  + +  L+D L ++   Q  +K+ EL++ +     N+  Y+ L++     + ++ A R
Sbjct: 182 PDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGE-APNIVTYNSLLNGLCLHHQMDHAVR 240

Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338
           + + M E GI  D+++   L++ Y  +G  + A   F  ++     P    Y  ++ A  
Sbjct: 241 LFEVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALY 300

Query: 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398
             G+ +    L + M   G   S + Y  LL    + G +  A  +   ++  +++P++ 
Sbjct: 301 QNGRIRTAKELFNNMQICGQSPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIR 360

Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
             ++L+    QA   + A   FD +  +G  P+      MI    K+  L +A  L +++
Sbjct: 361 IYSILIGGMFQARRWESAMEIFDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQM 420

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
           E+ G E    ++  ++    +   + +A + L ++ E   +P   + + L ++YA
Sbjct: 421 EESGCEQDEISFNFIIRGFLQENQVQKAMEFLKRMREKNFSPNDSVTLMLVNLYA 475



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 66/332 (19%), Positives = 139/332 (41%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           ++   FQ ++  Y  LI+A  K      A  + ++M       +  T  +++    K G 
Sbjct: 35  MTRSGFQGDILLYGYLINALRKTRQARRAVELHRRMLSEICSGNFFTYGLVIDSLCKDGL 94

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
             +  + F  + + G  P+  VY+S+I      G+ +  ++L D M++ GI+ +   Y +
Sbjct: 95  AIKGLKMFREMINMGICPNVIVYSSLINGLCRVGKLREAVNLFDEMVSQGIKANVITYNS 154

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+ +  + G  + A +  + M  E   P + + T L++   + G   +A   F+ MI+ G
Sbjct: 155 LIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQG 214

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P+     S++      + +D A+ L   + + G +    +Y  L++         EA 
Sbjct: 215 EAPNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNTLINGYCTSGKTEEAM 274

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
            L  K+      P       L     + G  + A +    ++   +    D +  +++GL
Sbjct: 275 TLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNNMQICGQSPSLDTYTVLLDGL 334

Query: 548 LAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
              G +++A  V   +++  +  S R+   LI
Sbjct: 335 CKNGCIEEAIDVFRSLKSIKYKPSIRIYSILI 366



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 68/161 (42%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+D   K  C+E+A  + + +      P I   ++L+    +A   + A E F+ + 
Sbjct: 327 YTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGMFQARRWESAMEIFDEIP 386

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G  P+   YN MI      G+      L   M  SG E+ E  +  ++R F Q   V+
Sbjct: 387 TVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEESGCEQDEISFNFIIRGFLQENQVQ 446

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
            A +    MR + F P      +LV  Y       +  +NF
Sbjct: 447 KAMEFLKRMREKNFSPNDSVTLMLVNLYAADAQSSELPNNF 487



 Score = 39.3 bits (90), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 21/87 (24%), Positives = 42/87 (48%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  Y+ +I+   KE  L +AER+  +M E+G   D ++   ++  + +   + +A E  
Sbjct: 393 NIVTYNIMINGLCKEGKLLEAERLFVQMEESGCEQDEISFNFIIRGFLQENQVQKAMEFL 452

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
           + +R   F P+  V   ++  Y    Q
Sbjct: 453 KRMREKNFSPNDSVTLMLVNLYAADAQ 479


>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
 gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
          Length = 918

 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 147/334 (44%), Gaps = 4/334 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +  +  + NV  Y+ LI        L+ A  +  +M+ +G+ P+ VT   L+++  +   
Sbjct: 346 MKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVENRR 405

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A      +  +G  P+   YN MI  Y   G PK  M +++ M+  G   +   Y  
Sbjct: 406 IKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNT 465

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           +++ +   G+   A +I ++MR    +P   S T L+  + +    + A   F+ M+  G
Sbjct: 466 IIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDG 525

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P++    ++I  Y K   LD A +LL  +++ G  P   TY VL+  L +    + AE
Sbjct: 526 LCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAE 585

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIIN 545
           +L   + E G  P      ++ D   + G    AL+   F +  ++   P+   +  +I 
Sbjct: 586 ELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEM--FNKMIEQGCLPNLLTYSSLIR 643

Query: 546 GLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
            L   G +++A+ +   +E  G    E   V +I
Sbjct: 644 ALGQEGKVEEAENLFAELERHGLIPDEITYVKMI 677



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 121/288 (42%), Gaps = 4/288 (1%)

Query: 215 KELLQPSRIDWINLLDRLREQN--TQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC 272
           KE  +P+ + +  L++ L +     + +  + E++L            +  I A     C
Sbjct: 278 KEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMIL--HGILPTAHTCTGPIIALCDMGC 335

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
            EDA R+   M   G  P++ T T L+     +G L  A   F  +   G  P+   YN+
Sbjct: 336 YEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNA 395

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I   V   + K    ++++M  +G   +   Y  +++ +   GD + A  + N M    
Sbjct: 396 LINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRG 455

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
               L +   +++ Y  +G+   A    D M   G KPD+     +I  + K + ++ A 
Sbjct: 456 HSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAF 515

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
            L  E+  DG  P   TYT L+D   + + ++ A  LL  +   G  P
Sbjct: 516 GLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRP 563



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 116/262 (44%), Gaps = 3/262 (1%)

Query: 242 KVAELVLS---EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVL 298
           K A LV++   +     N+  Y+ +I  +        A RIL  M + G  PD  + T L
Sbjct: 442 KKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTEL 501

Query: 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
           +  + K   ++ A   F  +   G  P++  Y ++I  Y    +     SL++ M  SG 
Sbjct: 502 ICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGC 561

Query: 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418
             + + Y  L+    +  +  GA ++  +M  E   P + + T +++   + G    A  
Sbjct: 562 RPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALE 621

Query: 419 NFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLG 478
            F+ MI  G  P+    +S+I A G++  +++A NL  ELE+ G  P   TY  +++   
Sbjct: 622 MFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYI 681

Query: 479 RLQLINEAEQLLGKISELGEAP 500
               +  A   LG++ + G  P
Sbjct: 682 MSGKVEHAFNFLGRMIKAGCQP 703



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 73/337 (21%), Positives = 139/337 (41%), Gaps = 15/337 (4%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +++E  + N   YS LI+       + +A  ++++M  +GI+P   T T  +      G 
Sbjct: 276 MAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGC 335

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            + A   F  +++ G +P+   Y ++I     +G  K+ + L   M   G+  +   Y A
Sbjct: 336 YEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNA 395

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    +   ++ A  + N+M      P + +   +++ Y   GDP +A    + M++ G
Sbjct: 396 LINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRG 455

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
           H  +     ++I  Y        AL +L  +   G +P   +YT L+    ++  +  A 
Sbjct: 456 HSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAF 515

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
            L  ++ + G  P      +L D Y +   ++K   A   LE  K   G     +  N L
Sbjct: 516 GLFNEMVDDGLCPNEVTYTALIDGYCK---DEKLDTATSLLEHMKRS-GCRPNVQTYNVL 571

Query: 548 LAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTF 584
                      +HGL +   F+ +E L   +I    F
Sbjct: 572 -----------IHGLTKQNNFSGAEELCKVMIEEGIF 597



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 76/368 (20%), Positives = 154/368 (41%), Gaps = 6/368 (1%)

Query: 220 PSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERI 279
           P+ + +  L++ L E     Y  V   ++       N+  Y+++I  +      + A  +
Sbjct: 388 PNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLV 447

Query: 280 LKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339
           +  M + G   ++VT   ++  Y  +GN   A    + +R  G +PD+  Y  +I  +  
Sbjct: 448 MNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCK 507

Query: 340 AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLES 399
             + +    L + M+  G+  +E  Y AL+  + +   +  A  +   M+    +P +++
Sbjct: 508 ISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQT 567

Query: 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELE 459
             +L+    +  +   A      MI  G  P+     +MI    K      AL +  ++ 
Sbjct: 568 YNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMI 627

Query: 460 KDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEK 519
           + G  P   TY+ L+  LG+   + EAE L  ++   G  P     V + + Y  +G  +
Sbjct: 628 EQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVE 687

Query: 520 KALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLME-----AQGFAASERL 574
            A   LG +     Q     +  +I GL     L D QR+  L +     + G+  +++ 
Sbjct: 688 HAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLAD-QRLAALPDVVPNCSFGYQTTDQD 746

Query: 575 KVALISSQ 582
            V+++S++
Sbjct: 747 AVSVMSAK 754



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/326 (21%), Positives = 122/326 (37%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           +LS+   +  +  YS L+   ++            +M   G+ P+++    +++   K G
Sbjct: 170 MLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDG 229

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           N+  A+   + +      PD   Y SMI+ +         + + + M   G E +   Y 
Sbjct: 230 NVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYS 289

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+      G V  A  +   M +    PT  +CT  + A    G  + A   F  M   
Sbjct: 290 TLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNK 349

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G +P+     ++I+      +L  A+ L   + +DG  P   TY  L++ L   + I  A
Sbjct: 350 GCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYA 409

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
             +L  +   G +P       +   Y   G  KKA+  +  +  +        +  II G
Sbjct: 410 FVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKG 469

Query: 547 LLAGGFLQDAQRVHGLMEAQGFAASE 572
               G    A R+  LM   G    E
Sbjct: 470 YCDSGNTTSALRILDLMRDGGCKPDE 495



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 107/247 (43%), Gaps = 12/247 (4%)

Query: 347 MSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA 406
           MS +DM+  SG+      Y ALL   ++ G         + M  E  QP L     ++ A
Sbjct: 165 MSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINA 224

Query: 407 YGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG 466
             + G+   A +    +      PD     SMI  + +K+ LD AL +  ++ K+G EP 
Sbjct: 225 LCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPN 284

Query: 467 PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQ----VSLCDMYARAGIEKKAL 522
             TY+ L++ L     +NEA  L+ ++   G  P         ++LCDM    G  + A 
Sbjct: 285 TVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDM----GCYEDAW 340

Query: 523 QALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
           +   F++ K +   P+   +  +I+GL   G L+ A  +   M   G   +     ALI+
Sbjct: 341 RL--FVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALIN 398

Query: 581 SQTFNRQ 587
               NR+
Sbjct: 399 ILVENRR 405



 Score = 47.0 bits (110), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 53/262 (20%), Positives = 107/262 (40%), Gaps = 4/262 (1%)

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           + R     + L   G +     Y+++++     G     M     M++ G++ +  IY A
Sbjct: 161 MARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNA 220

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++ +  + G+V  A  I   +   E  P   + T ++  + +  D D A   F+ M + G
Sbjct: 221 VINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEG 280

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            +P+    +++I        +++A +L+ E+   G  P   T T  +  L  +    +A 
Sbjct: 281 CEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAW 340

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIIN 545
           +L   +   G  P      +L      +GI K A+    F    ++ + P+   +  +IN
Sbjct: 341 RLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGL--FHRMSRDGVFPNTVTYNALIN 398

Query: 546 GLLAGGFLQDAQRVHGLMEAQG 567
            L+    ++ A  V  LM   G
Sbjct: 399 ILVENRRIKYAFVVLNLMGRNG 420


>gi|125542792|gb|EAY88931.1| hypothetical protein OsI_10416 [Oryza sativa Indica Group]
          Length = 796

 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 130/295 (44%), Gaps = 1/295 (0%)

Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338
           + + + E  + P+  T  +LVH +   G L  A     +++  G  PD   YN+++ A+ 
Sbjct: 195 VFRSLIELRLHPNHYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHC 254

Query: 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398
             G      +L+  M   GI  ++  Y  L+ +FA+ G ++ A ++   M    F+P L 
Sbjct: 255 RKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLR 314

Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHK-PDDRCTASMIAAYGKKNLLDKALNLLLE 457
           +  +L     QAG  D+A    D M RLG   PD     +++ A  K      AL LL E
Sbjct: 315 TYNVLAMGLCQAGKVDEAFRLKDEMERLGTALPDVVTYNTLVDACFKWRCSSDALRLLEE 374

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI 517
           +   G +P   T+ ++V  L +   + EA   L KI+E G AP      +L D Y +AG 
Sbjct: 375 MRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGN 434

Query: 518 EKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572
             KA   +  +  K  +M       ++  L      +DA+ +      +GF   E
Sbjct: 435 VAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDE 489



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 87/383 (22%), Positives = 156/383 (40%), Gaps = 46/383 (12%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           ++EE    +V  Y+ LIDA+ K   +  A  ++ +M   G+  D  T   +++   K   
Sbjct: 410 IAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKR 469

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMIT------------ 355
            + A+E   S    GF PD+  Y +++ AY     P+  + L D MI             
Sbjct: 470 YEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNT 529

Query: 356 -----------------------SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
                                   G+   E  Y  ++ ++ + GD+  A +  N M    
Sbjct: 530 LIKGLCRMERLKEAIDKLNEFVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENS 589

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
           F+P + +C  L+      G  D+A   F+  +  G K D     ++I +  K   +D AL
Sbjct: 590 FKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTAL 649

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
           +   ++E  G +P   TY V++  L       EA  +L K+++ G+      Q   C + 
Sbjct: 650 HFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADSGKLS----QSFACPLL 705

Query: 513 ARAGIEKKALQAL-GFLEAKKEQMGPDD-----FERIINGLLAGGFLQDAQRVHGLMEAQ 566
             +  ++  ++   G  EA+  +   D+      ER +NGL  GG L++A+ V   M  +
Sbjct: 706 KPSSADEADVKEHEGKPEAESSEKAQDNALETYMER-LNGLCTGGQLKEAKAVLDEMMQK 764

Query: 567 GFAASERLKVALISSQTFNRQRQ 589
           G        + L+      ++RQ
Sbjct: 765 GMPVDCSTYITLMEGLIKRQKRQ 787



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 117/242 (48%), Gaps = 1/242 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L++AH ++  L +A  +L +M  +GI P   T   LV  +++ G + +A +  ES+ 
Sbjct: 246 YNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMT 305

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI-YLALLRSFAQCGDV 378
           ++GF+PD + YN + M    AG+      L D M   G    + + Y  L+ +  +    
Sbjct: 306 AYGFEPDLRTYNVLAMGLCQAGKVDEAFRLKDEMERLGTALPDVVTYNTLVDACFKWRCS 365

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             A ++   MR +  +PTL +  ++V++  + G  ++A    + +   G  PD     ++
Sbjct: 366 SDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTL 425

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           I AY K   + KA  L+ E+   G +    T   ++  L +++   +AE+LL    + G 
Sbjct: 426 IDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGF 485

Query: 499 AP 500
            P
Sbjct: 486 VP 487



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 134/317 (42%), Gaps = 8/317 (2%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ L+DA  K  C  DA R+L++M + G+ P +VT  ++V    K G L+ A    
Sbjct: 348 DVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKL 407

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E +   G  PD   YN++I AY  AG      +L+D M+  G++        +L +  + 
Sbjct: 408 EKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKM 467

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
                A ++ +      F P   S   ++ AY +  +P+ A   +D MI     P     
Sbjct: 468 KRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTY 527

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I    +   L +A++ L E  + G  P   TY +++    +   +  A +   K+ E
Sbjct: 528 NTLIKGLCRMERLKEAIDKLNEFVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVE 587

Query: 496 LGEAPPFKIQVSLCDMYARA-GIEKKALQALGFLEA---KKEQMGPDDFERIINGLLAGG 551
                 FK  V  C+       +  K  +AL   E+   K +++    +  +I  +   G
Sbjct: 588 NS----FKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVG 643

Query: 552 FLQDAQRVHGLMEAQGF 568
            +  A      ME +G 
Sbjct: 644 DVDTALHFFDDMEVKGL 660



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 83/180 (46%), Gaps = 8/180 (4%)

Query: 203 KEEDPSPLLAEWKELLQPSRIDWINLLDRL------REQNTQLYFKVAELVLSEESFQTN 256
           KE +P P L  W ++++   I  I+  + L       E+  +   K+ E V  E+    +
Sbjct: 501 KEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNEFV--EKGLVPD 558

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
              Y+ +I A+ KE  LE+A R   KM EN   PD+VT   L++     G LD+A + FE
Sbjct: 559 ETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFE 618

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
           S    G + D   YN++I +    G     +   D M   G++     Y  +L + ++ G
Sbjct: 619 SWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAG 678



 Score = 43.9 bits (102), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 42/194 (21%), Positives = 84/194 (43%), Gaps = 3/194 (1%)

Query: 311 AKEAFESLRSH-GFQPDKKVYNSMIMAYVNAGQ--PKLGMSLVDMMITSGIERSEEIYLA 367
           A +   SLR   G +P  +  N+++ A   +    P+  + +   +I   +  +   +  
Sbjct: 154 AAQLLHSLRRRRGVRPSLQAANAVLSALSRSPSTLPQASLDVFRSLIELRLHPNHYTFNL 213

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+ +    G +  A    + M+     P   +   L+ A+ + G   +AR+    M R G
Sbjct: 214 LVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDG 273

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P      ++++A+ +   + +A  ++  +   GFEP   TY VL   L +   ++EA 
Sbjct: 274 IAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAMGLCQAGKVDEAF 333

Query: 488 QLLGKISELGEAPP 501
           +L  ++  LG A P
Sbjct: 334 RLKDEMERLGTALP 347


>gi|410109903|gb|AFV61031.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           montevidensis]
          Length = 431

 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 120/261 (45%), Gaps = 6/261 (2%)

Query: 218 LQPSRIDWINLLD---RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           L+PS + +  L++   RL + +     K A L       Q +V  YS LI+   KE+ ++
Sbjct: 173 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLA---SGVQPDVYTYSVLINGLCKESKID 229

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           DA  +  +M   G+VP+ VT T L+  + K G +D A E ++ + S    PD   YN++I
Sbjct: 230 DANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLI 289

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
                 G  K    L+D M   G++  +  Y  L+    + GD+  A +    M  E  +
Sbjct: 290 YGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTR 349

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
                 T L+    + G    A      M+ +G KPD R    +I  + KK  + K   L
Sbjct: 350 LDDVVYTALISGLCREGQSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKL 409

Query: 455 LLELEKDGFEPGPATYTVLVD 475
           L E+++DG  P   TY VL++
Sbjct: 410 LKEMQRDGHVPSVVTYNVLMN 430



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/313 (20%), Positives = 146/313 (46%), Gaps = 5/313 (1%)

Query: 191 CKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELV--- 247
           C+ + + ++ L+  +       E  E   P+ + + N+L     ++  +  ++A+ V   
Sbjct: 110 CRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDI--RIAQSVFDA 167

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +++   + +V  Y+ L++ + +   L++  R+   M  +G+ PD+ T +VL++   K   
Sbjct: 168 ITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESK 227

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D A E F+ +   G  P+   + ++I  +   G+  L M +   M++  +      Y  
Sbjct: 228 IDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNT 287

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    + GD++ A  + + M ++  +P   + T L++   + GD D A  +   MI+  
Sbjct: 288 LIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQEN 347

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            + DD    ++I+   ++     A  +L E+   G +P   TYT++++   +   + +  
Sbjct: 348 TRLDDVVYTALISGLCREGQSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGS 407

Query: 488 QLLGKISELGEAP 500
           +LL ++   G  P
Sbjct: 408 KLLKEMQRDGHVP 420



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/267 (21%), Positives = 110/267 (41%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E  +  ++  ++ L+    K+  +  A+ +   + + G+ P +V+   L++ Y + G+LD
Sbjct: 135 ECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 194

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
                  ++ + G QPD   Y+ +I       +      L D M+  G+  +   +  L+
Sbjct: 195 EGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLI 254

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               + G V  A +I   M  +   P L +   L+    + GD  QA    D M   G K
Sbjct: 255 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLK 314

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     ++I    K   LD A      + ++        YT L+  L R     +AE++
Sbjct: 315 PDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGQSVDAEKM 374

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAG 516
           L ++  +G  P  +    + + + + G
Sbjct: 375 LREMLSVGLKPDARTYTMIINEFCKKG 401


>gi|357481045|ref|XP_003610808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512143|gb|AES93766.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1084

 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 150/351 (42%), Gaps = 51/351 (14%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YSK+I      + +E A  + ++M  NGIVP + T T+L+  + KAG + +A++ F+ + 
Sbjct: 463 YSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQARKWFDEML 522

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P+   Y ++I AY+ A Q  +   L +MM+  G + +   Y AL+    + G + 
Sbjct: 523 HKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHCKAGQIE 582

Query: 380 GAGQITNIMR--IEE------FQPTLESC-----------------------------TL 402
            A QI   MR  IE       F+    +C                             T+
Sbjct: 583 KACQIYARMRGDIESSDMDKYFKLDHNNCEGPNVITYGALVDGLCKANRVKEAHELLDTM 642

Query: 403 L--------------VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLL 448
           L              ++ + + G    A+  F  M   G+ P+    +S I    K N L
Sbjct: 643 LAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERGYSPNLYTYSSFIDCLFKDNRL 702

Query: 449 DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSL 508
           D  L +L ++ ++   P    YT +VD L ++   +EA +L+ K+ E G  P      ++
Sbjct: 703 DLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKTDEAYKLMLKMEEKGCNPNVVTYTAM 762

Query: 509 CDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
            D + ++G  ++ L+    + +K        +  +IN   + G L +A ++
Sbjct: 763 IDGFGKSGKIEQCLELFRDMCSKGCAPNFITYRVLINHCCSNGLLDEAYKL 813



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 74/337 (21%), Positives = 139/337 (41%), Gaps = 30/337 (8%)

Query: 245 ELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK 304
           +L+   E F  +   Y++++    + +  E+A  IL +M  +  +P++VT  +L+    +
Sbjct: 267 DLIDEAEDFVPDTVFYNRMVSGLCEASLFEEAMDILHRMRSSSCIPNVVTYRILLSGCLR 326

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
            G L R K     + + G  P+++++NS+I AY  +        L   MI  G +    +
Sbjct: 327 KGQLGRCKRILSMMITEGCYPNREIFNSLIHAYCKSRDYSYAYKLFKKMIKCGCQPGYLV 386

Query: 365 YLALLRSFAQ----------------CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYG 408
           Y   + S                     ++   G + N + +  F   L           
Sbjct: 387 YNIFIGSVCSNEEQPSSDILDLVEKAYSEMLDLGVVLNKVNVSNFARCL----------C 436

Query: 409 QAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPA 468
            AG  DQA      M+  G  PDD   + +I      + ++KA +L  E++++G  P   
Sbjct: 437 GAGKFDQAFKIICEMMGKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVY 496

Query: 469 TYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKA--LQALG 526
           TYT+L+D   +  LI +A +   ++   G  P      +L   Y +A     A  L  + 
Sbjct: 497 TYTILIDSFCKAGLIQQARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMM 556

Query: 527 FLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLM 563
            LE  K  +    +  +I+G    G ++ A +++  M
Sbjct: 557 LLEGCKPNVVT--YTALIDGHCKAGQIEKACQIYARM 591



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 123/286 (43%), Gaps = 16/286 (5%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ LI A+ K   +  A+ + + M   G  P++VT T L+  + KAG +++A + +
Sbjct: 529 NVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHCKAGQIEKACQIY 588

Query: 316 ESLR----------------SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
             +R                ++   P+   Y +++     A + K    L+D M+  G E
Sbjct: 589 ARMRGDIESSDMDKYFKLDHNNCEGPNVITYGALVDGLCKANRVKEAHELLDTMLAHGCE 648

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
            ++ +Y A++  F + G ++ A ++   M    + P L + +  ++   +    D     
Sbjct: 649 PNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERGYSPNLYTYSSFIDCLFKDNRLDLVLKV 708

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
              M+     P+      M+    K    D+A  L+L++E+ G  P   TYT ++D  G+
Sbjct: 709 LSKMLENSCTPNVVIYTEMVDGLCKIGKTDEAYKLMLKMEEKGCNPNVVTYTAMIDGFGK 768

Query: 480 LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
              I +  +L   +   G AP F     L +     G+  +A + L
Sbjct: 769 SGKIEQCLELFRDMCSKGCAPNFITYRVLINHCCSNGLLDEAYKLL 814



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 120/280 (42%), Gaps = 24/280 (8%)

Query: 240 YFKVAELVLSEESFQT--------NVRDYSKLIDAHAKENCLEDAERILKKM-------- 283
           Y K  ++ +++E F+         NV  Y+ LID H K   +E A +I  +M        
Sbjct: 540 YLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHCKAGQIEKACQIYARMRGDIESSD 599

Query: 284 --------NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
                   + N   P+++T   LV    KA  +  A E  +++ +HG +P++ VY+++I 
Sbjct: 600 MDKYFKLDHNNCEGPNVITYGALVDGLCKANRVKEAHELLDTMLAHGCEPNQIVYDAVID 659

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
            +   G+ +    +   M   G   +   Y + +    +   +    ++ + M      P
Sbjct: 660 GFCKIGKLQDAQEVFTKMSERGYSPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTP 719

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
            +   T +V+   + G  D+A      M   G  P+     +MI  +GK   +++ L L 
Sbjct: 720 NVVIYTEMVDGLCKIGKTDEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELF 779

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++   G  P   TY VL++      L++EA +LL ++ +
Sbjct: 780 RDMCSKGCAPNFITYRVLINHCCSNGLLDEAYKLLDEMKQ 819



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/270 (22%), Positives = 118/270 (43%), Gaps = 2/270 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y  L+D   K N +++A  +L  M  +G  P+ +    ++  + K G L  A+E F
Sbjct: 615 NVITYGALVDGLCKANRVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVF 674

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G+ P+   Y+S I       +  L + ++  M+ +    +  IY  ++    + 
Sbjct: 675 TKMSERGYSPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKI 734

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G    A ++   M  +   P + + T +++ +G++G  +Q    F  M   G  P+    
Sbjct: 735 GKTDEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNFITY 794

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +I       LLD+A  LL E+++  +     ++  +++  G  Q    +  LL ++SE
Sbjct: 795 RVLINHCCSNGLLDEAYKLLDEMKQTYWPKHILSHRKIIE--GFSQEFITSIGLLDELSE 852

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
               P   +   L D Y +AG  + AL  L
Sbjct: 853 NESVPVDSLYRILIDNYIKAGRLEVALDLL 882



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/313 (23%), Positives = 124/313 (39%), Gaps = 51/313 (16%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           L+  E+   +M + G+V + V  +        AG  D+A +    +   GF PD   Y+ 
Sbjct: 406 LDLVEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDQAFKIICEMMGKGFVPDDSTYSK 465

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I    +A + +   SL + M  +GI  S   Y  L+ SF + G ++ A +  + M  + 
Sbjct: 466 VIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQARKWFDEMLHKG 525

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P + + T L+ AY +A     A   F+ M+  G KP+     ++I  + K   ++KA 
Sbjct: 526 CTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHCKAGQIEKAC 585

Query: 453 NL---------------LLELEKDGFE-PGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
            +                 +L+ +  E P   TY  LVD L +   + EA +LL  +   
Sbjct: 586 QIYARMRGDIESSDMDKYFKLDHNNCEGPNVITYGALVDGLCKANRVKEAHELLDTMLAH 645

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDA 556
           G  P   +                                   ++ +I+G    G LQDA
Sbjct: 646 GCEPNQIV-----------------------------------YDAVIDGFCKIGKLQDA 670

Query: 557 QRVHGLMEAQGFA 569
           Q V   M  +G++
Sbjct: 671 QEVFTKMSERGYS 683



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 109/271 (40%), Gaps = 20/271 (7%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +SE  +  N+  YS  ID   K+N L+   ++L KM EN   P++V  T +V    K G 
Sbjct: 677 MSERGYSPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGK 736

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            D A +    +   G  P+   Y +MI  +  +G+ +  + L   M + G   +   Y  
Sbjct: 737 TDEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNFITYRV 796

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ-----AGDPDQARSNFDY 422
           L+      G +  A ++ + M+   +   + S   ++E + Q      G  D+   N   
Sbjct: 797 LINHCCSNGLLDEAYKLLDEMKQTYWPKHILSHRKIIEGFSQEFITSIGLLDELSEN--- 853

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPAT-----YTVLVDWL 477
                  P D     +I  Y K   L+ AL+LL E+      P  A      Y  L++ L
Sbjct: 854 ----ESVPVDSLYRILIDNYIKAGRLEVALDLLEEISS---SPSHAVSNKYLYASLIENL 906

Query: 478 GRLQLINEAEQLLGKISELGEAPPFKIQVSL 508
                +++A +L   +      P   I V L
Sbjct: 907 SHASKVDKALELYASMISKNVVPELSILVHL 937


>gi|357130030|ref|XP_003566661.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 827

 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 138/310 (44%), Gaps = 3/310 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  ++ +I    K+  +  A  +  +M + G+VPD+ T   +V    KA  +D+A+   
Sbjct: 231 DVVSFNTVIHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYNSIVDALCKARAMDKAEFVL 290

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G +PD   YN++I  Y  +G  K    +   M + G+      + + + S  + 
Sbjct: 291 RQMVDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLIPDTVTFSSFMSSLCKH 350

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G  + A +I   M  +   P + S ++L+  Y   G      + F  M   G   +  C 
Sbjct: 351 GRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYATEGRFADMNNLFHSMADKGIVSNCHCI 410

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +I+A+ K+ ++D+A+ +  E++  G  P   TY+ L+    R+  + +A +   ++  
Sbjct: 411 NILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMIS 470

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFL 553
           +G  P   +  SL   +   G   KA + +  + +K     P+   F  II+ L   G +
Sbjct: 471 IGIEPNTAVYHSLIHGFCMHGDLVKAKEFISEMMSKGLHR-PNIVFFSSIIHSLCIEGRV 529

Query: 554 QDAQRVHGLM 563
            DAQ V  L+
Sbjct: 530 MDAQDVFNLV 539



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/288 (21%), Positives = 123/288 (42%), Gaps = 36/288 (12%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           ++ +    ++  YS L+  +A E    D   +   M + GIV +     +L+  ++K G 
Sbjct: 363 MTTKGHMPDIVSYSILLHGYATEGRFADMNNLFHSMADKGIVSNCHCINILISAHAKRGM 422

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D A   F  ++  G +P+   Y+++I A+   G+    M     MI+ GIE +  +Y +
Sbjct: 423 MDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHS 482

Query: 368 LLRSFAQCGDVRGAGQITNIM------------------------RIEEFQ--------- 394
           L+  F   GD+  A +  + M                        R+ + Q         
Sbjct: 483 LIHGFCMHGDLVKAKEFISEMMSKGLHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHI 542

Query: 395 ---PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
              PT+ +   L++ Y   G  ++A    D M+ +G +PD     ++++ Y K   +D  
Sbjct: 543 GDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDG 602

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
           L L  E+     +P   TY +++D L R    + A+++  ++ + G A
Sbjct: 603 LILFREMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGTA 650



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/258 (20%), Positives = 116/258 (44%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++S+   + N+  +S +I +   E  + DA+ +   +   G  P IVT   L+  Y   G
Sbjct: 503 MMSKGLHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDRPTIVTFNSLIDGYCLVG 562

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            +++A    +++ S G +PD    N+++  Y  +G+   G+ L   M+   ++ +   Y 
Sbjct: 563 KMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYN 622

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            +L    + G    A ++ + M        +++  +L++   +    D+A + F  +  +
Sbjct: 623 IVLDGLLRAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAM 682

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
             K D     +MI A  K    ++A +L   +   G  P  +TY V++  L +   + EA
Sbjct: 683 DCKFDITILNTMINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIRNLLKEGSVEEA 742

Query: 487 EQLLGKISELGEAPPFKI 504
           + +   + + G AP  ++
Sbjct: 743 DTMFSSMEKSGCAPSSRL 760



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 71/344 (20%), Positives = 133/344 (38%), Gaps = 43/344 (12%)

Query: 244 AELVLSE---ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
           A LV +E   +  + NV  YS LI A  +   L DA     +M   GI P+      L+H
Sbjct: 426 AMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSLIH 485

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQ------------------------------------ 324
            +   G+L +AKE    + S G                                      
Sbjct: 486 GFCMHGDLVKAKEFISEMMSKGLHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDR 545

Query: 325 PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQI 384
           P    +NS+I  Y   G+ +    ++D M++ GIE        L+  + + G +     +
Sbjct: 546 PTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLIL 605

Query: 385 TNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGK 444
              M  ++ +PT  +  ++++   +AG    A+  F  MI  G   D      ++    +
Sbjct: 606 FREMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCR 665

Query: 445 KNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKI 504
            +L D+A+ L  +L     +        +++ L +++   EA  L   IS  G  P    
Sbjct: 666 NDLTDEAITLFHKLGAMDCKFDITILNTMINALYKVRRREEANDLFAAISTSGLVP---- 721

Query: 505 QVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLL 548
            VS   +  R  +++ +++    + +  E+ G     R++N ++
Sbjct: 722 NVSTYGVMIRNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDII 765


>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
 gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 113/251 (45%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E+    N+  ++ LIDA  KE    +AE++   M +  I PDI T   L++ +     LD
Sbjct: 248 EKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLD 307

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
           +AK+ FE + S    PD   YN++I  +  + + + G  L   M   G+      Y  L+
Sbjct: 308 KAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 367

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
           +     GD   A ++   M  +   P + + ++L++     G  ++A   FDYM +   K
Sbjct: 368 QGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIK 427

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
            D     +MI    K   +D   +L   L   G +P   TY  ++  L   +L+ EA  L
Sbjct: 428 LDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYAL 487

Query: 490 LGKISELGEAP 500
           L K+ E G  P
Sbjct: 488 LKKMKEDGPLP 498



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 75/376 (19%), Positives = 150/376 (39%), Gaps = 10/376 (2%)

Query: 219 QPSRIDWINLLDRLREQNTQLYFKVAELV-----LSEESFQTNVRDYSKLIDAHAKENCL 273
           +P  I +  L+  L   N     K +E V     + +   Q N+  Y  +++   K   +
Sbjct: 112 RPDTITFTTLIHGLFLHN-----KASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDI 166

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           + A  +L KM    I  D+V    ++    K  ++D A   F+ + + G +P+   Y+S+
Sbjct: 167 DLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSL 226

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           I    + G+      L+  MI   I  +   + AL+ +F + G    A ++ + M     
Sbjct: 227 ISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSI 286

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
            P + +   L+  +      D+A+  F++M+     PD     ++I  + K   ++    
Sbjct: 287 DPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTE 346

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
           L  E+   G      TYT L+  L      + A+++  ++   G  P       L D   
Sbjct: 347 LFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLC 406

Query: 514 RAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASER 573
             G  +KAL+   +++  + ++    +  +I G+   G + D   +   +  +G   +  
Sbjct: 407 NNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVV 466

Query: 574 LKVALISSQTFNRQRQ 589
               +IS     R  Q
Sbjct: 467 TYNTMISGLCSKRLLQ 482



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 70/315 (22%), Positives = 132/315 (41%), Gaps = 8/315 (2%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           ++ +++KL+ A AK    +    + +KM   GI  ++ T  +L++ + +   +  A    
Sbjct: 9   SIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALL 68

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G++P     +S++  Y +  +    ++LVD M+  G       +  L+      
Sbjct: 69  GKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLH 128

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
                A  + + M     QP L +  ++V    + GD D A +  + M     + D    
Sbjct: 129 NKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIF 188

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I +  K   +D ALNL  E+E  G  P   TY+ L+  L      ++A QLL  + E
Sbjct: 189 NTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIE 248

Query: 496 LGEAPPFKIQVSLCDMYARAG--IEKKALQALGFLEAKKEQMGPDDF--ERIINGLLAGG 551
               P      +L D + + G  +E + L      +  K  + PD F    +ING     
Sbjct: 249 KKINPNLVTFNALIDAFVKEGKFVEAEKLHD----DMIKRSIDPDIFTYNSLINGFCMHD 304

Query: 552 FLQDAQRVHGLMEAQ 566
            L  A+++   M ++
Sbjct: 305 RLDKAKQMFEFMVSK 319



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 70/320 (21%), Positives = 135/320 (42%), Gaps = 6/320 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E  ++ +   ++ LI      N   +A  ++ +M + G  P++VT  V+V+   K G+
Sbjct: 106 MVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGD 165

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D A      + +   + D  ++N++I +          ++L   M T GI  +   Y +
Sbjct: 166 IDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSS 225

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+      G    A Q+ + M  ++  P L +   L++A+ + G   +A    D MI+  
Sbjct: 226 LISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRS 285

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLL-LELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
             PD     S+I  +   + LDKA  +    + KD F P   TY  L+    + + + + 
Sbjct: 286 IDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCF-PDLDTYNTLIKGFCKSKRVEDG 344

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERII 544
            +L  ++S  G         +L       G    A +   F +   + + PD   +  ++
Sbjct: 345 TELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKV--FKQMVSDGVPPDIMTYSILL 402

Query: 545 NGLLAGGFLQDAQRVHGLME 564
           +GL   G L+ A  V   M+
Sbjct: 403 DGLCNNGKLEKALEVFDYMQ 422



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 75/374 (20%), Positives = 148/374 (39%), Gaps = 13/374 (3%)

Query: 207 PSPLLAEWKELLQP-SRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLID 265
           P P + E+ +LL   +++   +L+  L E+  +L                N+  Y+ LI+
Sbjct: 6   PLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRL------------GISHNLYTYNILIN 53

Query: 266 AHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQP 325
              + + +  A  +L KM + G  P IVT + L++ Y     +  A    + +   G++P
Sbjct: 54  CFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRP 113

Query: 326 DKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQIT 385
           D   + ++I       +    ++LVD M+  G + +   Y  ++    + GD+  A  + 
Sbjct: 114 DTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLL 173

Query: 386 NIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKK 445
           N M   + +  +     ++++  +    D A + F  M   G +P+    +S+I+     
Sbjct: 174 NKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSY 233

Query: 446 NLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQ 505
                A  LL ++ +    P   T+  L+D   +     EAE+L   + +    P     
Sbjct: 234 GRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTY 293

Query: 506 VSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEA 565
            SL + +       KA Q   F+ +K      D +  +I G      ++D   +   M  
Sbjct: 294 NSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSH 353

Query: 566 QGFAASERLKVALI 579
           +G          LI
Sbjct: 354 RGLVGDTVTYTTLI 367



 Score = 46.2 bits (108), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 59/138 (42%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           ++  YS L+D       LE A  +   M ++ I  DI   T ++    KAG +D   + F
Sbjct: 394 DIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLF 453

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
            SL   G +P+   YN+MI    +    +   +L+  M   G       Y  L+R+  + 
Sbjct: 454 CSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRD 513

Query: 376 GDVRGAGQITNIMRIEEF 393
           GD   + ++   MR   F
Sbjct: 514 GDKAASAELIREMRSCRF 531



 Score = 39.7 bits (91), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 40/79 (50%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           LS +  + NV  Y+ +I     +  L++A  +LKKM E+G +PD  T   L+  + + G+
Sbjct: 456 LSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGD 515

Query: 308 LDRAKEAFESLRSHGFQPD 326
              + E    +RS  F  D
Sbjct: 516 KAASAELIREMRSCRFVGD 534


>gi|326527027|dbj|BAK04455.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 80/356 (22%), Positives = 143/356 (40%), Gaps = 36/356 (10%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           ++ +  + +V  Y+ +IDA  K   ++ AE +L++M  NG  PD VT   ++H Y+  G 
Sbjct: 291 MTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGR 350

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L  A + F  ++S G  P+  + NS + +    G+ K    + D M   G +     Y  
Sbjct: 351 LKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSYCT 410

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           LL  +A  G       + N M+            +L+ AY + G  D A   F  M + G
Sbjct: 411 LLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQG 470

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL---GRL---- 480
             PD    +++I+A+ +   L  A+    ++   G +P  A Y  ++      G L    
Sbjct: 471 VSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFCMHGGLVKAK 530

Query: 481 ----QLIN-------------------------EAEQLLGKISELGEAPPFKIQVSLCDM 511
               ++IN                         +A  +   ++++GE P      SL D 
Sbjct: 531 ELVSEMINKGIPRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDG 590

Query: 512 YARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
           Y   G   KA + L  +E    +     +  +++G    G + D   +   M+ +G
Sbjct: 591 YCLVGKMDKAFKILDAMEVVGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKG 646



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/312 (19%), Positives = 127/312 (40%), Gaps = 2/312 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENG--IVPDIVTSTVLVHMYSKA 305
           +SE     NV  YS ++      +  + A  + + M + G    P++V    ++H + K 
Sbjct: 219 MSELGCVPNVFSYSIILKGLCDNSMSQRALDLFQMMAKEGGACSPNVVAYNTVIHGFFKE 278

Query: 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
           G   +A   F  +   G +PD   YN +I A   A        ++  M T+G +     Y
Sbjct: 279 GETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTVTY 338

Query: 366 LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
             ++  +A  G ++ A ++   M+     P +  C   + +  + G   +A   FD M  
Sbjct: 339 NCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTA 398

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
            GHKPD     +++  Y  +      + L   ++ +G       + +L+    +  ++++
Sbjct: 399 KGHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDD 458

Query: 486 AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIIN 545
           A  +  ++ + G +P      ++   ++R G    A++    + A+  Q     +  II 
Sbjct: 459 AMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQ 518

Query: 546 GLLAGGFLQDAQ 557
           G    G L  A+
Sbjct: 519 GFCMHGGLVKAK 530



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 101/248 (40%), Gaps = 1/248 (0%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIV-PDIVTSTVLVHMYSKAGNLDRAK 312
           Q N   Y  +I        L  A+ ++ +M   GI  PDIV    +++   K G +  A 
Sbjct: 507 QPNTAVYHSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFNSVINSLCKDGRVMDAH 566

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           + F+ +   G +PD   + S+I  Y   G+      ++D M   G+E     Y  LL  +
Sbjct: 567 DIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKILDAMEVVGVETDIVTYSTLLDGY 626

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + G +     +   M+ +  +P   +  +++    +AG    AR  F  MI  G     
Sbjct: 627 FKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTV 686

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
                ++    + N  D+A+ L  +L     +        +++ + ++Q   EA++L   
Sbjct: 687 SIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKELFAT 746

Query: 493 ISELGEAP 500
           IS  G  P
Sbjct: 747 ISASGLLP 754



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 62/291 (21%), Positives = 117/291 (40%), Gaps = 38/291 (13%)

Query: 329 VYNSMIMAYVNAGQPKLGMSLVDMMITSGIE-----------------RSEEIYLALLRS 371
            Y+ ++     A +P LG+ L   ++ +G++                 R+EE    LL  
Sbjct: 159 TYSILMDCCCRARRPDLGLVLFGCILRTGLKIHQITASTLLKCLCYANRTEEAVNVLLHR 218

Query: 372 FAQCGDVRGAGQITNIMR-----------IEEFQ----------PTLESCTLLVEAYGQA 410
            ++ G V      + I++           ++ FQ          P + +   ++  + + 
Sbjct: 219 MSELGCVPNVFSYSIILKGLCDNSMSQRALDLFQMMAKEGGACSPNVVAYNTVIHGFFKE 278

Query: 411 GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATY 470
           G+  +A S F  M R G KPD      +I A  K   +DKA  +L ++  +G +P   TY
Sbjct: 279 GETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTVTY 338

Query: 471 TVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEA 530
             ++     L  + EA ++  K+   G  P   I  S      + G  K+A +    + A
Sbjct: 339 NCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTA 398

Query: 531 KKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
           K  +     +  +++G  + G+  D   +   M++ G AA  R+   LI +
Sbjct: 399 KGHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHA 449



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/249 (21%), Positives = 106/249 (42%), Gaps = 16/249 (6%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++ +I++  K+  + DA  I   + + G  PD++T T L+  Y   G +D+A +  +++ 
Sbjct: 549 FNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKILDAME 608

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G + D   Y++++  Y   G+   G++L   M   G++ +   Y  +L    + G   
Sbjct: 609 VVGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTV 668

Query: 380 GAGQITNIMRIEEFQPTLES-CTLLVEAYG-------QAGDPDQARSNFDYMIRLGHKPD 431
            A +        +F   +ES  T+ V  YG       +    D+A   F  +  +  K  
Sbjct: 669 AARK--------KFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFS 720

Query: 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
                +MI A  K    ++A  L   +   G  P  +TY V++  L +   + +A  +  
Sbjct: 721 ITILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINLLKDGAVEDANNMFS 780

Query: 492 KISELGEAP 500
            + + G  P
Sbjct: 781 SMEKSGIVP 789



 Score = 40.4 bits (93), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 27/134 (20%), Positives = 56/134 (41%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E      V  Y  ++    + NC ++A  + +K+    +   I     +++   K    +
Sbjct: 679 ESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKE 738

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            AKE F ++ + G  P++  Y  MI+  +  G  +   ++   M  SGI     +   ++
Sbjct: 739 EAKELFATISASGLLPNESTYGVMIINLLKDGAVEDANNMFSSMEKSGIVPGSRLLNRII 798

Query: 370 RSFAQCGDVRGAGQ 383
           R   + G++  AG 
Sbjct: 799 RMLLEKGEIAKAGN 812


>gi|410109919|gb|AFV61039.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           duartei]
          Length = 412

 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 120/259 (46%), Gaps = 2/259 (0%)

Query: 218 LQPSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L+PS + +  L++  +R  +    F +   +L+    Q +V  YS LI+   KE+ ++DA
Sbjct: 154 LRPSVVSYNTLMNGYIRXGDLDEGFXLKSXMLAS-GVQPDVYTYSVLINGLCKESKMDDA 212

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
             +  +M   G+VP+ VT T L+  + K G +D A E ++ + S    PD   YN++I  
Sbjct: 213 NELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYG 272

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
               G  K    L+D M   G++  +  Y  L+    + GD+  A +    M  E  +  
Sbjct: 273 LCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLINGCCKEGDLDSAFEHRKRMIQENIRLD 332

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
             + T L+    Q G    A      M+ +G KPD R    +I  + K   +     LL 
Sbjct: 333 EVAYTALISGXCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKXGDVWXGSKLLK 392

Query: 457 ELEKDGFEPGPATYTVLVD 475
           E+++DG  P   TY VL++
Sbjct: 393 EMQRDGHVPSVVTYNVLMN 411



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/313 (19%), Positives = 143/313 (45%), Gaps = 5/313 (1%)

Query: 191 CKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELV--- 247
           C+ + + ++ L+  +       E  E   P+ + + N+L     ++  +  +VA+ V   
Sbjct: 91  CRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDI--RVAQSVFDA 148

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +++   + +V  Y+ L++ + +   L++   +   M  +G+ PD+ T +VL++   K   
Sbjct: 149 ITKWGLRPSVVSYNTLMNGYIRXGDLDEGFXLKSXMLASGVQPDVYTYSVLINGLCKESK 208

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D A E F+ +   G  P+   + ++I  +   G+  L M +   M++  +      Y  
Sbjct: 209 MDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNT 268

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    + GD++ A  + + M ++  +P   + T L+    + GD D A  +   MI+  
Sbjct: 269 LIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLINGCCKEGDLDSAFEHRKRMIQEN 328

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            + D+    ++I+   ++     A  +L E+   G +P   TYT++++   +   +    
Sbjct: 329 IRLDEVAYTALISGXCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKXGDVWXGS 388

Query: 488 QLLGKISELGEAP 500
           +LL ++   G  P
Sbjct: 389 KLLKEMQRDGHVP 401



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/267 (20%), Positives = 109/267 (40%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E  +  ++  ++ L+    K+  +  A+ +   + + G+ P +V+   L++ Y + G+LD
Sbjct: 116 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRXGDLD 175

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
                   + + G QPD   Y+ +I       +      L D M+  G+  +   +  L+
Sbjct: 176 EGFXLKSXMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLI 235

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               + G V  A +I   M  +   P L +   L+    + GD  QA    D M   G K
Sbjct: 236 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLK 295

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     ++I    K+  LD A      + ++        YT L+    +     +AE++
Sbjct: 296 PDKITYTTLINGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGXCQEGRSVDAEKM 355

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAG 516
           L ++  +G  P  +    + + + + G
Sbjct: 356 LREMLSVGLKPDARTYTMIINEFCKXG 382


>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 135/301 (44%), Gaps = 8/301 (2%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           +  + N+  ++ +I+   ++  L++   +L +M+  G VPD VT   LV+ Y K GN  +
Sbjct: 47  KGLEPNLITFNMIINGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQ 106

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A      +  +G  P+   Y S+I +   AG     M   D M   G+  +E  Y  ++ 
Sbjct: 107 ALVLHAEMVRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIIN 166

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
            FAQ G +  A ++ N M    F P++ +   L+  +   G  ++A      M+  G  P
Sbjct: 167 GFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLP 226

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           D    +++I+ + +   LD+A  + +E+      P   TY+ L+  L   + + EA  + 
Sbjct: 227 DVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMF 286

Query: 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG--PD--DFERIING 546
            ++  +   P      +L + Y + G   KAL     L  +  Q G  PD   +  +ING
Sbjct: 287 QEMLTIKLPPDEFTYTTLINAYCKEGDLNKALH----LHDEMIQKGFLPDAVTYNVLING 342

Query: 547 L 547
           L
Sbjct: 343 L 343



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 98/388 (25%), Positives = 163/388 (42%), Gaps = 53/388 (13%)

Query: 247 VLSEESFQTNVRD---YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS 303
           VL E S +  V D   Y+ L++ + KE     A  +  +M  NG+ P++VT T L++   
Sbjct: 75  VLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPNVVTYTSLINSMC 134

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363
           KAGNL+RA E F+ +   G  P+++ Y ++I  +   G       +++ M  SG   S  
Sbjct: 135 KAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIV 194

Query: 364 IYLALLRSFAQCG----------DVRGAGQITNIMR----IEEFQPTLE---SCTLLVEA 406
            Y AL+      G          D+ G G + +++     I  F    E   +  + VE 
Sbjct: 195 TYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQELDRAFQMKVEM 254

Query: 407 YGQAGDPD------------------QARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLL 448
            G++  PD                  +A   F  M+ +   PD+    ++I AY K+  L
Sbjct: 255 IGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDL 314

Query: 449 DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP------- 501
           +KAL+L  E+ + GF P   TY VL++ L +     EA +LL K+      P        
Sbjct: 315 NKALHLHDEMIQKGFLPDAVTYNVLINGLNKQARSKEARRLLLKLFYDDSIPSAVTYNTL 374

Query: 502 --------FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFL 553
                   FK  V+L   +   G+  +A Q    +  K  +     +  II+G    G +
Sbjct: 375 IENCCNIEFKSAVALVKGFCMKGLMDEADQVFESMINKNHKPNEAIYNVIIHGHCRIGNV 434

Query: 554 QDAQRVHGLMEAQGFAASERLKVALISS 581
             A +++  M    F       +AL+ +
Sbjct: 435 LKAYKLYKEMVHVDFVPHTVTVLALVKA 462



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 145/321 (45%), Gaps = 16/321 (4%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ +ID + K    ++A   L+ M   G+ P+++T  ++++   + G L    E  
Sbjct: 17  NVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGLCRDGRLKETSEVL 76

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G+ PD+  YN+++  Y   G     + L   M+ +G+  +   Y +L+ S  + 
Sbjct: 77  VEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPNVVTYTSLINSMCKA 136

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G++  A +  + M +    P   + T ++  + Q G  D+A    + M R G  P     
Sbjct: 137 GNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTY 196

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQ----LLG 491
            ++I  +     +++A+ LL ++   G  P   +Y+ ++    R Q ++ A Q    ++G
Sbjct: 197 NALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQELDRAFQMKVEMIG 256

Query: 492 KISELGEAPPFKIQV-SLCDMYARAGIEKKALQALG-FLEAKKEQMGPDDF--ERIINGL 547
           K S L +A  +   +  LC+       +++  +A   F E    ++ PD+F    +IN  
Sbjct: 257 K-SVLPDAVTYSSLIQGLCE-------QRRLTEACDMFQEMLTIKLPPDEFTYTTLINAY 308

Query: 548 LAGGFLQDAQRVHGLMEAQGF 568
              G L  A  +H  M  +GF
Sbjct: 309 CKEGDLNKALHLHDEMIQKGF 329



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 124/279 (44%), Gaps = 18/279 (6%)

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS---HGFQPDKKVYNSMI 334
           R  K+M  NG +P++VT   ++  Y K   L R  EAF  LRS    G +P+   +N +I
Sbjct: 4   RFFKEMERNGCLPNVVTYNTMIDGYCK---LKRTDEAFGFLRSMGLKGLEPNLITFNMII 60

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
                 G+ K    ++  M   G    E  Y  L+  + + G+   A  +   M      
Sbjct: 61  NGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLS 120

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P + + T L+ +  +AG+ ++A   FD M   G  P++R   ++I  + ++ LLD+A  +
Sbjct: 121 PNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRV 180

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
           L E+ + GF P   TY  L++    L  + EA  LL  +   G  P      ++   +AR
Sbjct: 181 LNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFAR 240

Query: 515 AGIEKKALQALGFLEAKKEQMG----PD--DFERIINGL 547
                +A Q       K E +G    PD   +  +I GL
Sbjct: 241 NQELDRAFQ------MKVEMIGKSVLPDAVTYSSLIQGL 273



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 103/253 (40%), Gaps = 15/253 (5%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  YS +I   A+   L+ A ++  +M    ++PD VT + L+    +   L  A + F
Sbjct: 227 DVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMF 286

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + + +    PD+  Y ++I AY   G     + L D MI  G       Y  L+    + 
Sbjct: 287 QEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQ 346

Query: 376 GDVRGAGQIT-------NIMRIEEFQPTLESC--------TLLVEAYGQAGDPDQARSNF 420
              + A ++        +I     +   +E+C          LV+ +   G  D+A   F
Sbjct: 347 ARSKEARRLLLKLFYDDSIPSAVTYNTLIENCCNIEFKSAVALVKGFCMKGLMDEADQVF 406

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
           + MI   HKP++     +I  + +   + KA  L  E+    F P   T   LV  L   
Sbjct: 407 ESMINKNHKPNEAIYNVIIHGHCRIGNVLKAYKLYKEMVHVDFVPHTVTVLALVKALFTE 466

Query: 481 QLINEAEQLLGKI 493
            +  E  +++G I
Sbjct: 467 GMDGELNEVIGDI 479



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 93/228 (40%), Gaps = 17/228 (7%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI+A+ KE  L  A  +  +M + G +PD VT  VL++  +K      A+     L 
Sbjct: 301 YTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQARSKEARRLLLKLF 360

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV----------------DMMITSGIERSEE 363
                P    YN++I    N  + K  ++LV                + MI    + +E 
Sbjct: 361 YDDSIPSAVTYNTLIENCCNI-EFKSAVALVKGFCMKGLMDEADQVFESMINKNHKPNEA 419

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
           IY  ++    + G+V  A ++   M   +F P   +   LV+A    G   +       +
Sbjct: 420 IYNVIIHGHCRIGNVLKAYKLYKEMVHVDFVPHTVTVLALVKALFTEGMDGELNEVIGDI 479

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYT 471
           +R     D   +  ++    K+  +D   NLL E+ KDG  P   T T
Sbjct: 480 LRSCKLTDAELSKVLVEINQKEGNMDMVFNLLTEMAKDGLIPSTGTPT 527


>gi|125538899|gb|EAY85294.1| hypothetical protein OsI_06665 [Oryza sativa Indica Group]
          Length = 632

 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 105/412 (25%), Positives = 170/412 (41%), Gaps = 23/412 (5%)

Query: 170 EKIHE-RGEMILPEEPKPITGKCKLITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWIN 227
           EK+HE   EM      +P T     +      L +++    LL E KE  +QP+   +  
Sbjct: 211 EKVHELYNEMSNEGHCQPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTM 270

Query: 228 LLDRLREQNTQLYFKV----AELVLSEE----SFQTNVRDYSKLIDAHAKENCLEDAERI 279
           ++         L+FK+      L L EE      + +V  Y++LI    K   +++A   
Sbjct: 271 IIS--------LFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGKAGRIDEAYHF 322

Query: 280 LKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA-YV 338
             +M   G  PD V    +++   KAG LD   + FE +      P+   YN++I A + 
Sbjct: 323 YHEMQREGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFE 382

Query: 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398
           +  +     S  + M  SGI  S   Y  L+  F +   +  A  +   M  + F P   
Sbjct: 383 SKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPA 442

Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
           +   L++A G+A   D A   F  +         R  A MI   GK   LD A+NL  E+
Sbjct: 443 AYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEM 502

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
            K G  P    Y  L+  L R  +++EA   + K+ E G  P       + +  A+ G  
Sbjct: 503 SKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGP 562

Query: 519 KKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
            +A++ L     K   + PD   +  +++ L   G  ++A  +   M A GF
Sbjct: 563 HRAMEMLT--NMKNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEMNALGF 612



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 91/389 (23%), Positives = 153/389 (39%), Gaps = 44/389 (11%)

Query: 232 LREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPD 291
           L EQ  +++  + E+V S     T + + S++I        +  A  I  ++      P 
Sbjct: 135 LVEQYGEMWKMIQEMVRSPICVVTPM-ELSQVIRMLGNAKMIGKAITIFYQIKARKCQPT 193

Query: 292 IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGF-QPDKKVYNSMIMAYVNAGQPKLGMSLV 350
                 ++ M    G  ++  E +  + + G  QPD   Y+++I A+   G+    + L+
Sbjct: 194 AQAYNSMIIMLIHEGQYEKVHELYNEMSNEGHCQPDTVTYSALISAFCKLGRQDSAIRLL 253

Query: 351 DMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410
           + M  +G++ + +IY  ++  F +  +V GA  +   MR    +P + + T L+   G+A
Sbjct: 254 NEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGKA 313

Query: 411 GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE------------- 457
           G  D+A   +  M R G KPD     +MI   GK   LD  L L  E             
Sbjct: 314 GRIDEAYHFYHEMQREGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTY 373

Query: 458 -----------------------LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
                                  ++  G  P P TY++L+D   +   I +A  LL ++ 
Sbjct: 374 NTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMD 433

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD---FERIINGLLAGG 551
           E G  P      SL D   +A   K+   A    +  KE  G      +  +I  L   G
Sbjct: 434 EKGFPPCPAAYCSLIDALGKA---KRYDLACELFQELKENCGSSSARVYAVMIKHLGKAG 490

Query: 552 FLQDAQRVHGLMEAQGFAASERLKVALIS 580
            L DA  +   M   G   +     AL+S
Sbjct: 491 RLDDAINLFDEMSKLGCTPNVYAYNALMS 519



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 97/221 (43%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS LID   K N +E A  +L++M+E G  P       L+    KA   D A E F+ L+
Sbjct: 409 YSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELK 468

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
            +      +VY  MI     AG+    ++L D M   G   +   Y AL+   A+   + 
Sbjct: 469 ENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLD 528

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A      M+     P + S  +++    + G P +A      M     KPD     +++
Sbjct: 529 EALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTVL 588

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
           +A     + ++A  L+ E+   GFE    TY+ +++ +G++
Sbjct: 589 SALSHAGMFEEAAELMKEMNALGFEYDLITYSSILEAIGKV 629



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 95/230 (41%), Gaps = 7/230 (3%)

Query: 184 PKPITGKCKLITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFK 242
           P P T    ++ D      + E    LL E  E    P    + +L+D L +   + Y  
Sbjct: 404 PSPFTYS--ILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGK--AKRYDL 459

Query: 243 VAELV--LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
             EL   L E    ++ R Y+ +I    K   L+DA  +  +M++ G  P++     L+ 
Sbjct: 460 ACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMS 519

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
             ++A  LD A      ++ HG  PD   YN ++      G P   M ++  M  S I+ 
Sbjct: 520 GLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKP 579

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410
               Y  +L + +  G    A ++   M    F+  L + + ++EA G+ 
Sbjct: 580 DAVSYNTVLSALSHAGMFEEAAELMKEMNALGFEYDLITYSSILEAIGKV 629


>gi|115474441|ref|NP_001060817.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|42408384|dbj|BAD09535.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113622786|dbj|BAF22731.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|125601950|gb|EAZ41275.1| hypothetical protein OsJ_25782 [Oryza sativa Japonica Group]
          Length = 798

 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/318 (22%), Positives = 140/318 (44%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           ++    N   Y+ L+  +      ++A  I +KM  +G+ PD+VT   L+    K G   
Sbjct: 234 DQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKMCRDGVEPDVVTYNTLMVYLCKNGRSM 293

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A++ F+S+   G +PD  +Y +++  Y   G       L+D+M+ +G +    I+  L+
Sbjct: 294 EARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYLVQMHQLLDVMVRNGTQPDHYIFNILI 353

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
            ++A+ G V  A    + MR +   P + +   +++A  + G  D A S FD +I  G  
Sbjct: 354 GAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDALCRVGKVDDAMSQFDRLISEGLT 413

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           P+     ++I      +  DKA  L +E+   G  P    +  L++ L +  ++  A+ +
Sbjct: 414 PNGVVFRTLIHGLCACDKWDKAEELAVEMIGRGICPNTIFFNTLLNHLCKEGMVTRAKNI 473

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLA 549
              +  +          +L D Y   G   +A + L  +     +     +  IING   
Sbjct: 474 FDLMVRVDVQCDVITYTTLIDGYCLDGKVDEATKLLEGMVLDGVKPNEVTYNTIINGYCK 533

Query: 550 GGFLQDAQRVHGLMEAQG 567
            G ++DA  +   M ++G
Sbjct: 534 NGRIEDACSLFRQMASKG 551



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 139/320 (43%), Gaps = 20/320 (6%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKM----NENGIVPDIVTSTVLVHMYSKAGNLDRA 311
           N   Y+ L+     EN  + A  +L  M       G  PD+V+ T +++   + G LD+A
Sbjct: 166 NAFSYNILLKGLCDENRSQQALHLLHTMMADDTRGGCPPDVVSYTTVINGLLREGQLDKA 225

Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
              F+ +   G  P+   YN ++  Y ++G+PK  + +   M   G+E     Y  L+  
Sbjct: 226 YCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKMCRDGVEPDVVTYNTLMVY 285

Query: 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
             + G    A ++ + M  +  +P       L+  Y   G   Q     D M+R G +PD
Sbjct: 286 LCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYLVQMHQLLDVMVRNGTQPD 345

Query: 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
                 +I AY K  ++D+A+    ++ + G  P   TY  ++D L R+  +++A     
Sbjct: 346 HYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDALCRVGKVDDAMSQFD 405

Query: 492 KISELGEAPPFKIQVSL------CDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERI 543
           ++   G  P   +  +L      CD + +A  E+ A++ +G        + P+   F  +
Sbjct: 406 RLISEGLTPNGVVFRTLIHGLCACDKWDKA--EELAVEMIG------RGICPNTIFFNTL 457

Query: 544 INGLLAGGFLQDAQRVHGLM 563
           +N L   G +  A+ +  LM
Sbjct: 458 LNHLCKEGMVTRAKNIFDLM 477



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/330 (21%), Positives = 137/330 (41%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ +I+   +E  L+ A  +  +M + G+ P+ +T   L+H Y  +G    A   F
Sbjct: 205 DVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIF 264

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G +PD   YN++++     G+      + D M+  G +    IY  LL  +A  
Sbjct: 265 RKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYATE 324

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +    Q+ ++M     QP      +L+ AY + G  D+A   F  M + G  P+    
Sbjct: 325 GYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTY 384

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            +++ A  +   +D A++    L  +G  P    +  L+  L      ++AE+L  ++  
Sbjct: 385 GTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIG 444

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
            G  P      +L +   + G+  +A      +     Q     +  +I+G    G + +
Sbjct: 445 RGICPNTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVDE 504

Query: 556 AQRVHGLMEAQGFAASERLKVALISSQTFN 585
           A ++   M   G   +E     +I+    N
Sbjct: 505 ATKLLEGMVLDGVKPNEVTYNTIINGYCKN 534



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/322 (20%), Positives = 128/322 (39%), Gaps = 35/322 (10%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + ++    N+  Y  ++DA  +   ++DA     ++   G+ P+ V    L+H       
Sbjct: 372 MRQQGLHPNIVTYGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDK 431

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            D+A+E    +   G  P+   +N+++      G           M+T    R++ I+  
Sbjct: 432 WDKAEELAVEMIGRGICPNTIFFNTLLNHLCKEG-----------MVT----RAKNIFDL 476

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++R   QC DV     IT               T L++ Y   G  D+A    + M+  G
Sbjct: 477 MVRVDVQC-DV-----ITY--------------TTLIDGYCLDGKVDEATKLLEGMVLDG 516

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            KP++    ++I  Y K   ++ A +L  ++   G  PG   Y+ ++  L + + I  A+
Sbjct: 517 VKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTILHGLFQTRRIAAAK 576

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
           +L   + + G   P      +     +      AL+    L      +    F  +I+ L
Sbjct: 577 ELYLWMIKCGIKLPIGTYNIILQGLCQNNCTDDALRMFHNLCLIDFHLQNRTFNIMIDAL 636

Query: 548 LAGGFLQDAQRVHGLMEAQGFA 569
           L GG   +A+ +   + A+G  
Sbjct: 637 LKGGRHDEAKDLFASLLARGLV 658



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 62/278 (22%), Positives = 126/278 (45%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           + P+ I +  LL+ L ++      K    ++     Q +V  Y+ LID +  +  +++A 
Sbjct: 447 ICPNTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVDEAT 506

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
           ++L+ M  +G+ P+ VT   +++ Y K G ++ A   F  + S G  P   +Y++++   
Sbjct: 507 KLLEGMVLDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTILHGL 566

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
               +      L   MI  GI+     Y  +L+   Q      A ++ + + + +F    
Sbjct: 567 FQTRRIAAAKELYLWMIKCGIKLPIGTYNIILQGLCQNNCTDDALRMFHNLCLIDFHLQN 626

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
            +  ++++A  + G  D+A+  F  ++  G  P+      M+ +  ++ LL++  +L L 
Sbjct: 627 RTFNIMIDALLKGGRHDEAKDLFASLLARGLVPNVVTYWLMMKSLIEQGLLEELDDLFLS 686

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
           LEK+G          LV  L +   + +A   L KI E
Sbjct: 687 LEKNGCTADSRMLNALVGKLPQKGEVRKAGVYLSKIDE 724



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 60/285 (21%), Positives = 113/285 (39%), Gaps = 9/285 (3%)

Query: 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL- 349
           D+ T ++++   S+AG+LD A  A   +   G+      ++ ++    +  +    M + 
Sbjct: 95  DLCTYSIVIGCCSRAGHLDLAFAALGRVIRTGWTAQAITFSPLLKGLCHDKRTSDAMDIA 154

Query: 350 VDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ----PTLESCTLLVE 405
           +  M   G   +   Y  LL+        + A  + + M  ++ +    P + S T ++ 
Sbjct: 155 LRRMPALGCTPNAFSYNILLKGLCDENRSQQALHLLHTMMADDTRGGCPPDVVSYTTVIN 214

Query: 406 AYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
              + G  D+A   FD M+  G  P+      ++  Y       +A+ +  ++ +DG EP
Sbjct: 215 GLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKMCRDGVEP 274

Query: 466 GPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
              TY  L+ +L +     EA ++   + + G  P   I  +L   YA  G   +  Q L
Sbjct: 275 DVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYLVQMHQLL 334

Query: 526 GFLEAKKEQMGPDD--FERIINGLLAGGFLQDAQRVHGLMEAQGF 568
             +     Q  PD   F  +I      G + +A      M  QG 
Sbjct: 335 DVMVRNGTQ--PDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGL 377


>gi|413915966|gb|AFW55898.1| hypothetical protein ZEAMMB73_909442, partial [Zea mays]
          Length = 694

 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 85/371 (22%), Positives = 169/371 (45%), Gaps = 3/371 (0%)

Query: 186 PITGKCKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAE 245
           P T  C  I   +L L +      +   ++ L  P+   +  ++D L +Q   +  +   
Sbjct: 166 PNTRTCNHI---LLRLARNRQGGLVRRLFEHLPAPNVFTFNIVIDFLCKQGELVEARALF 222

Query: 246 LVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKA 305
           + +       +V  Y+ LID + K   LE+ E ++ +M ++G   D+VT   L++ +SK 
Sbjct: 223 VRMKAMGCSPDVVTYNSLIDGYGKCGELEEVELLVSEMRKSGCAADVVTYNALINCFSKF 282

Query: 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
           G +++A   F  ++  G   +    ++ + A+   G  +  M L   M   G+  +E  Y
Sbjct: 283 GWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFCKEGLVREAMKLFAQMRVRGMMPNEFTY 342

Query: 366 LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
            +L+    + G +  A  + + M  +   P + + T++V+   + G    A      M R
Sbjct: 343 TSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSLMER 402

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
            G K ++    ++I  +      ++AL+LL E++  G E   + Y  L+  L ++Q ++E
Sbjct: 403 AGVKANELLYTTLIHGHFMNKNSERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDE 462

Query: 486 AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIIN 545
           A+ LL K+ + G  P   I  ++ D + +AG E +A+  L  +     Q     +  +I+
Sbjct: 463 AKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALID 522

Query: 546 GLLAGGFLQDA 556
           GL   G + +A
Sbjct: 523 GLCKAGSIYEA 533



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 127/297 (42%), Gaps = 35/297 (11%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+D   K   L+DA  +L +M   G+VP++VT TV+V    K G +  A +    + 
Sbjct: 342 YTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSLME 401

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G + ++ +Y ++I  +      +  + L++ M   G+E    +Y  L           
Sbjct: 402 RAGVKANELLYTTLIHGHFMNKNSERALDLLNEMKNKGMELDVSLYGTL----------- 450

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
               I  + ++++                     D+A+S    M   G +P+     +++
Sbjct: 451 ----IWGLCKVQKL--------------------DEAKSLLHKMDDCGLRPNTVIYTTIM 486

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            A+ K     +A+ LL ++   G +P   TY  L+D L +   I EA     K+ ELG  
Sbjct: 487 DAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLD 546

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDA 556
           P  ++  +L D + + G   KA+  +  +  K   +    +  +I+G +  G LQ A
Sbjct: 547 PNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGA 603



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 104/228 (45%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +  +    NV  Y+ ++D   KE  +  A+ +L  M   G+  + +  T L+H +    N
Sbjct: 365 MVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNKN 424

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            +RA +    +++ G + D  +Y ++I       +     SL+  M   G+  +  IY  
Sbjct: 425 SERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTT 484

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++ +F + G    A  + + +     QP + +   L++   +AG   +A S+FD M  LG
Sbjct: 485 IMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELG 544

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
             P+ +   ++I  + K   L KA++L+ E+   G       YT L+D
Sbjct: 545 LDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLID 592



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 98/212 (46%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + +   + N   Y+ ++DA  K     +A  +L K+ ++G+ P++VT   L+    KAG+
Sbjct: 470 MDDCGLRPNTVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGS 529

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A   F+ +R  G  P+ +VY ++I  +   G     + L++ M+  G+   + +Y +
Sbjct: 530 IYEAISHFDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTS 589

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    + GD++GA  +   M     Q  L   T  +  +       +AR     MI  G
Sbjct: 590 LIDGHMKQGDLQGAFALKAKMIETGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTG 649

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELE 459
             PD      +I  Y K   +++A +L  E+E
Sbjct: 650 ITPDKTAYNCLIRKYQKLGNMEEASSLQNEME 681



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 122/286 (42%), Gaps = 6/286 (2%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLS---EESFQTNVRDYSKLIDAHAKENCLE 274
           L P+ + +  ++D L ++       VA+ VLS       + N   Y+ LI  H      E
Sbjct: 370 LVPNVVTYTVMVDGLCKEGK---VAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNSE 426

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
            A  +L +M   G+  D+     L+    K   LD AK     +   G +P+  +Y +++
Sbjct: 427 RALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIM 486

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
            A+  AG+    ++L+  +  SG++ +   Y AL+    + G +  A    + MR     
Sbjct: 487 DAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLD 546

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P ++  T L++ + + G   +A    + M+  G   D     S+I  + K+  L  A  L
Sbjct: 547 PNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGAFAL 606

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
             ++ + G +     YT  +     + ++ EA  +L ++   G  P
Sbjct: 607 KAKMIETGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITP 652



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 94/219 (42%), Gaps = 8/219 (3%)

Query: 185 KPITGKCKLITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKV 243
           +P T     I D      KE +   LL +  +  LQP+ + +  L+D L +  + +Y  +
Sbjct: 476 RPNTVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGS-IYEAI 534

Query: 244 AEL-VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMY 302
           +    + E     NV+ Y+ LID   K   L  A  ++ +M + G+  D V  T L+  +
Sbjct: 535 SHFDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGH 594

Query: 303 SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE 362
            K G+L  A      +   G Q D   Y   I  + N    +    ++  MI +GI   +
Sbjct: 595 MKQGDLQGAFALKAKMIETGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDK 654

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCT 401
             Y  L+R + + G++  A  + N     E +  L SCT
Sbjct: 655 TAYNCLIRKYQKLGNMEEASSLQN-----EMESVLSSCT 688



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 97/233 (41%), Gaps = 9/233 (3%)

Query: 187 ITGKCKLITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKVAE 245
           I G CK+        +K ++   LL +  +  L+P+ + +  ++D   +   +       
Sbjct: 451 IWGLCKV--------QKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKESEAVALL 502

Query: 246 LVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKA 305
             + +   Q NV  Y  LID   K   + +A     KM E G+ P++   T L+  + K 
Sbjct: 503 HKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQVYTTLIDGFCKI 562

Query: 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
           G+L +A      +   G   DK VY S+I  ++  G  +   +L   MI +G++     Y
Sbjct: 563 GSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGAFALKAKMIETGLQLDLYCY 622

Query: 366 LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418
              +  F     ++ A  + + M      P   +   L+  Y + G+ ++A S
Sbjct: 623 TCFISGFCNMNMMQEARGVLSEMIGTGITPDKTAYNCLIRKYQKLGNMEEASS 675



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 61/311 (19%), Positives = 115/311 (36%), Gaps = 70/311 (22%)

Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338
           +++++ E+   P++ T  +++    K G L  A+  F  +++ G  PD   YNS      
Sbjct: 186 LVRRLFEHLPAPNVFTFNIVIDFLCKQGELVEARALFVRMKAMGCSPDVVTYNS------ 239

Query: 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398
                                        L+  + +CG++     + + MR       + 
Sbjct: 240 -----------------------------LIDGYGKCGELEEVELLVSEMRKSGCAADVV 270

Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
           +   L+  + + G  ++A S F  M RLG   +    ++ + A+ K+ L+ +A+ L  ++
Sbjct: 271 TYNALINCFSKFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFCKEGLVREAMKLFAQM 330

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
              G  P   TYT LVD   +   +++A  LL ++   G  P                  
Sbjct: 331 RVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVT-------------- 376

Query: 519 KKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVAL 578
                                +  +++GL   G +  A  V  LME  G  A+E L   L
Sbjct: 377 ---------------------YTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTTL 415

Query: 579 ISSQTFNRQRQ 589
           I     N+  +
Sbjct: 416 IHGHFMNKNSE 426


>gi|410109871|gb|AFV61015.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           barbata]
          Length = 429

 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 123/268 (45%), Gaps = 8/268 (2%)

Query: 211 LAEWKELLQPSRIDWINLLD---RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAH 267
           +A+W   L+PS + +  L++   RL + N     K A L       Q +V  YS LI+  
Sbjct: 166 IAKWG--LRPSVVSYNTLMNGYIRLGDLNEGFRLKSAMLA---SGVQPDVYTYSVLINGL 220

Query: 268 AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK 327
            KE+ ++DA  +  +M   G+ P+ VT T L+  + K G +D A E ++ + S    PD 
Sbjct: 221 CKESKMDDANELFDEMLVKGLXPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDL 280

Query: 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNI 387
             YN++I      G  K    L+D M   G++  +  Y  L+    + GD+  A +    
Sbjct: 281 ITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKXDKITYTTLIDGCCKEGDLDAAFEHRKR 340

Query: 388 MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447
           M  E  +    + T L+    Q G    A      M+ +G KPD      +I  + KK  
Sbjct: 341 MIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTXTYTMIINEFCKKGD 400

Query: 448 LDKALNLLLELEKDGFEPGPATYTVLVD 475
           + K   LL +++++G  P   TY VL++
Sbjct: 401 VWKGSKLLKDMQRNGHAPSVVTYNVLMN 428



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/246 (21%), Positives = 114/246 (46%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ L++ + +   L +  R+   M  +G+ PD+ T +VL++   K   +D A E F
Sbjct: 174 SVVSYNTLMNGYIRLGDLNEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELF 233

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + +   G  P+   + ++I  +   G+  L M +   M++  +      Y  L+    + 
Sbjct: 234 DEMLVKGLXPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKK 293

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           GD++ A  + + M ++  +    + T L++   + GD D A  +   MI+   + DD   
Sbjct: 294 GDLKQAHDLIDEMSMKGLKXDKITYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAY 353

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I+   ++     A  +L E+   G +P   TYT++++   +   + +  +LL  +  
Sbjct: 354 TALISGLCQEGRSVDAEKMLREMLSVGLKPDTXTYTMIINEFCKKGDVWKGSKLLKDMQR 413

Query: 496 LGEAPP 501
            G AP 
Sbjct: 414 NGHAPS 419



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 83/179 (46%)

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           +L+H + K G++  A+  F+++   G +P    YN+++  Y+  G    G  L   M+ S
Sbjct: 145 ILMHRFCKDGDIRIAQSVFDAIAKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAMLAS 204

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
           G++     Y  L+    +   +  A ++ + M ++   P   + T L++ + + G  D A
Sbjct: 205 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLXPNGVTFTTLIDGHCKNGRVDLA 264

Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
              +  M+     PD     ++I    KK  L +A +L+ E+   G +    TYT L+D
Sbjct: 265 MEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKXDKITYTTLID 323



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/257 (20%), Positives = 105/257 (40%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++ L+    K+  +  A+ +   + + G+ P +V+   L++ Y + G+L+       ++ 
Sbjct: 143 FNILMHRFCKDGDIRIAQSVFDAIAKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAML 202

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G QPD   Y+ +I       +      L D M+  G+  +   +  L+    + G V 
Sbjct: 203 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLXPNGVTFTTLIDGHCKNGRVD 262

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A +I   M  +   P L +   L+    + GD  QA    D M   G K D     ++I
Sbjct: 263 LAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKXDKITYTTLI 322

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
               K+  LD A      + ++        YT L+  L +     +AE++L ++  +G  
Sbjct: 323 DGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 382

Query: 500 PPFKIQVSLCDMYARAG 516
           P       + + + + G
Sbjct: 383 PDTXTYTMIINEFCKKG 399


>gi|27545040|gb|AAO18446.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
 gi|108711829|gb|ABF99624.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 863

 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 129/302 (42%), Gaps = 4/302 (1%)

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           + +E +L+ M E G++PD  +   +V  ++ AGNL R  E F  + + G  PD   Y  +
Sbjct: 263 DQSEMLLRTMLEAGVLPDTASYRHIVDAFAGAGNLSRVAELFAEMSATGHTPDPSAYLGL 322

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           + A+   G     ++++  M   G   +   Y  LL  + + G   G  ++   MR    
Sbjct: 323 MEAHTLVGATAEAVAVLRQMQADGCPPTAATYRVLLDLYGRQGRFDGVRELFREMRT-TV 381

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD-DRCTASMIAAYGKKNLLDKAL 452
            P   +  +L   +G  G   +    F  M+    +PD D C   M+A  G+  L + A 
Sbjct: 382 PPDTATYNVLFRVFGDGGFFKEVVELFQDMLHSEVEPDIDTCENVMVAC-GRGGLHEDAR 440

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
            +L  +  +G  P    YT LV+ LG   +  EA      ++E+G  P  +   +L + +
Sbjct: 441 EVLDYITTEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANAF 500

Query: 513 ARAGIEKKALQALGFLEAKKE-QMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAAS 571
           A+ G+ ++A      +      Q   D F+ +I     G  L DA + +  M    F   
Sbjct: 501 AKGGLFQEAEAIFSRMTNNAAIQKDKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPD 560

Query: 572 ER 573
           ER
Sbjct: 561 ER 562



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 83/189 (43%), Gaps = 1/189 (0%)

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           EDA  +L  +   G+VP     T LV     A   + A  AF  +   G  P  + YN++
Sbjct: 437 EDAREVLDYITTEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNAL 496

Query: 334 IMAYVNAGQPKLGMSLVDMMIT-SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
             A+   G  +   ++   M   + I++ ++ + AL+ ++ Q   +  A +    MR   
Sbjct: 497 ANAFAKGGLFQEAEAIFSRMTNNAAIQKDKDSFDALIEAYCQGAQLDDAVKAYMEMRKSR 556

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
           F P   S   ++ AY  AG  D+++  F+ +  +   P       M++ Y + +    A 
Sbjct: 557 FNPDERSLEGVLNAYCIAGVIDESKEQFEELQSMVTVPSIIAYCMMLSLYARNDRWTDAY 616

Query: 453 NLLLELEKD 461
           +LL E++ +
Sbjct: 617 DLLEEMKTN 625



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 99/235 (42%), Gaps = 7/235 (2%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L          ++   + + M  + + PDI T   ++    + G  + A+E  + + 
Sbjct: 388 YNVLFRVFGDGGFFKEVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDAREVLDYIT 447

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G  P  K Y  ++ A  +A   +      +MM   G   + E Y AL  +FA+ G  +
Sbjct: 448 TEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANAFAKGGLFQ 507

Query: 380 GA----GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
            A     ++TN   I++ + + ++   L+EAY Q    D A   +  M +    PD+R  
Sbjct: 508 EAEAIFSRMTNNAAIQKDKDSFDA---LIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSL 564

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
             ++ AY    ++D++     EL+     P    Y +++    R     +A  LL
Sbjct: 565 EGVLNAYCIAGVIDESKEQFEELQSMVTVPSIIAYCMMLSLYARNDRWTDAYDLL 619



 Score = 39.7 bits (91), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 63/134 (47%), Gaps = 4/134 (2%)

Query: 241 FKVAELVLS----EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTST 296
           F+ AE + S      + Q +   +  LI+A+ +   L+DA +   +M ++   PD  +  
Sbjct: 506 FQEAEAIFSRMTNNAAIQKDKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLE 565

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
            +++ Y  AG +D +KE FE L+S    P    Y  M+  Y    +      L++ M T+
Sbjct: 566 GVLNAYCIAGVIDESKEQFEELQSMVTVPSIIAYCMMLSLYARNDRWTDAYDLLEEMKTN 625

Query: 357 GIERSEEIYLALLR 370
               + ++  ++++
Sbjct: 626 RASSTHQVIASMIK 639


>gi|356561387|ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 520

 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 137/320 (42%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + + S + +V  YS +ID   K+  +++A  +  +MN  GI PD++T T L+  +  AG 
Sbjct: 141 IEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQ 200

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L  A      +      P+   YN++I      G+ K   +L+ +M   G++    IY  
Sbjct: 201 LMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSI 260

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+  +   G+V+ A QI  +M      P + S  +++    +    D+A +    M+   
Sbjct: 261 LMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKN 320

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD    +S+I    K   +   L+L  E+   G      TY  L+D L + Q +++A 
Sbjct: 321 MIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAI 380

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
            L  K+ E G  P      +L D   + G  KK       L  K   +    +  +I+GL
Sbjct: 381 ALFMKMKERGIQPNKYTYTALIDGLCKGGRLKKGQALFQHLLVKGYCIDVWTYTVMISGL 440

Query: 548 LAGGFLQDAQRVHGLMEAQG 567
              G   +A  +   ME  G
Sbjct: 441 CKEGMFDEALAMKSKMEDNG 460



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 146/332 (43%), Gaps = 4/332 (1%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           + FQ +   Y  L++   K      A ++L+ + +    PD+V  + ++    K   +D 
Sbjct: 109 QGFQMDQVSYGILLNGLCKIGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDE 168

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A + +  + + G  PD   Y ++I  +  AGQ      L++ MI   I  +   Y  L+ 
Sbjct: 169 AYDLYSEMNARGIFPDVITYTTLICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTLID 228

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
           +  + G V+ +  +  +M  +  +P +   ++L++ Y   G+  +A+  F  M++ G  P
Sbjct: 229 TLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNP 288

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           D      +I    K   +D+A+NLL E+      P   TY+ L+D L +L  I     L 
Sbjct: 289 DVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKLGRITTILDLT 348

Query: 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLL 548
            ++   G+        SL D   +     KA+    F++ K+  + P+   +  +I+GL 
Sbjct: 349 KEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIAL--FMKMKERGIQPNKYTYTALIDGLC 406

Query: 549 AGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
            GG L+  Q +   +  +G+         +IS
Sbjct: 407 KGGRLKKGQALFQHLLVKGYCIDVWTYTVMIS 438



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 124/281 (44%), Gaps = 4/281 (1%)

Query: 281 KKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNA 340
           K+M   GIVPD+VT ++L++ +   G +  +      +   G+QP+  + N+++      
Sbjct: 34  KQMEAKGIVPDLVTLSILINCFCHLGQMAFSFSVLGKILKLGYQPNTIILNTLMKGLCLK 93

Query: 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
           G+ K  +   D ++  G +  +  Y  LL    + G+ R A ++   +     +P +   
Sbjct: 94  GEVKKSLHFHDKVVAQGFQMDQVSYGILLNGLCKIGETRCAIKLLRTIEDRSTRPDVVMY 153

Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
           + +++   +    D+A   +  M   G  PD     ++I  +     L +A  LL E+  
Sbjct: 154 STIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLMEAFGLLNEMIL 213

Query: 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKK 520
               P   TY  L+D L +   + E++ LL  +++ G  P   I   L D Y   G  +K
Sbjct: 214 KNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQK 273

Query: 521 ALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRV 559
           A Q   FL   +  + PD   +  IINGL  G  + +A  +
Sbjct: 274 AKQI--FLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNL 312



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 113/256 (44%), Gaps = 2/256 (0%)

Query: 245 ELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK 304
           E++L  ++   N+  Y+ LID   KE  +++++ +L  M + G+ PD+V  ++L+  Y  
Sbjct: 210 EMIL--KNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCL 267

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
            G + +AK+ F  +   G  PD   YN +I       +    M+L+  M+   +      
Sbjct: 268 VGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVT 327

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
           Y +L+    + G +     +T  M        L +   L++   +  + D+A + F  M 
Sbjct: 328 YSSLIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMK 387

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
             G +P+     ++I    K   L K   L   L   G+     TYTV++  L +  + +
Sbjct: 388 ERGIQPNKYTYTALIDGLCKGGRLKKGQALFQHLLVKGYCIDVWTYTVMISGLCKEGMFD 447

Query: 485 EAEQLLGKISELGEAP 500
           EA  +  K+ + G  P
Sbjct: 448 EALAMKSKMEDNGCIP 463



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/283 (20%), Positives = 126/283 (44%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           + P+   +  L+D L ++      K    V++++  + +V  YS L+D +     ++ A+
Sbjct: 216 INPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAK 275

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
           +I   M + G+ PD+ +  ++++   K   +D A      +      PD   Y+S+I   
Sbjct: 276 QIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGL 335

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
              G+    + L   M   G   +   Y +LL    +  ++  A  +   M+    QP  
Sbjct: 336 CKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQPNK 395

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
            + T L++   + G   + ++ F +++  G+  D      MI+   K+ + D+AL +  +
Sbjct: 396 YTYTALIDGLCKGGRLKKGQALFQHLLVKGYCIDVWTYTVMISGLCKEGMFDEALAMKSK 455

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
           +E +G  P   T+ +++  L      ++AE+LL ++   G  P
Sbjct: 456 MEDNGCIPNAVTFEIIIRSLLEKDENDKAEKLLHEMIAKGLLP 498


>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
 gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
          Length = 577

 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 127/271 (46%), Gaps = 1/271 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ LID   KE    +A ++ K+M   G+  D V  T L+    + G + +A   +
Sbjct: 55  DVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVY 114

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           +++ SHG  PD    ++MI     AG+    + +   M   G+  +E +Y AL+    + 
Sbjct: 115 KTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKA 174

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
             +  A ++   M+     P   +  +L++   ++GD + AR+ FD M+  G KPD    
Sbjct: 175 RKMDCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTY 234

Query: 436 ASMIAAYGKKNLLDKALNLLL-ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
             +I+ + K    D A + L  E   +G      TYT +VDWL + + I EA  L+ KI+
Sbjct: 235 NILISGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKIT 294

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
             G  P      +L +   + G  ++A+  L
Sbjct: 295 ANGCTPTIATYNALLNGLCKMGRLEEAIDLL 325



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 94/399 (23%), Positives = 169/399 (42%), Gaps = 40/399 (10%)

Query: 219 QPSRIDWINLLDRL--REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
            P  + + +L+D L   +++ + Y    E+ L   +  T    Y+ LI    +   +  A
Sbjct: 53  TPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVC--YTALIRELLQTGKIPQA 110

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
             + K M  +G VPD+VT + ++   SKAG +  A   F+S+ + G  P++ VY+++I  
Sbjct: 111 SSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHG 170

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
              A +    + ++  M  +        Y  L+    + GDV  A    + M     +P 
Sbjct: 171 LCKARKMDCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPD 230

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL-LDKALNLL 455
           + +  +L+  + +AG+ D A  +      +     D  T + I  +  KN  +++A+ L+
Sbjct: 231 VYTYNILISGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALM 290

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCD----- 510
            ++  +G  P  ATY  L++ L ++  + EA  LL KI + G  P      SL D     
Sbjct: 291 EKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKE 350

Query: 511 --------MYARAGIEKKALQALGFLEAKKE--QMG------------------PD--DF 540
                   ++    +   AL  + +    +E  Q G                  PD    
Sbjct: 351 KRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTL 410

Query: 541 ERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
             +I+GL   G +  A R+   MEA+G A +E +  ALI
Sbjct: 411 STMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALI 449



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 120/292 (41%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           ++  Y+ ++D  AK   +E+A  +++K+  NG  P I T   L++   K G L+ A +  
Sbjct: 266 DIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLL 325

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +  +G  PD   Y S+I       +      L   M   G+      Y AL+R   Q 
Sbjct: 326 RKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQT 385

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A  +   M      P + + + +++   +AG    A   F  M   G  P++   
Sbjct: 386 GKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVY 445

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
           +++I    K   +D AL +L +++K    P   TY +L+D L +   +  A     ++ E
Sbjct: 446 SALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLE 505

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
            G  P       L   + +AG    A      + + +       +  +I+GL
Sbjct: 506 AGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSANVVTYGALISGL 557



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 108/242 (44%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ LID   KE    +A ++ K+M   G+  D V  T L+    + G + +A   +
Sbjct: 336 DVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVY 395

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           +++ SHG  PD    ++MI     AG+    + +   M   G+  +E +Y AL+    + 
Sbjct: 396 KTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKA 455

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
             +  A ++   M+     P   +  +L++   ++GD + AR+ FD M+  G KPD    
Sbjct: 456 RKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTY 515

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +I+ + K    D A  +  ++          TY  L+  L + + + +A      + E
Sbjct: 516 NILISGFCKAGNTDAACGVFDDMSSSRCSANVVTYGALISGLCKRRQLTKASLYFQHMKE 575

Query: 496 LG 497
            G
Sbjct: 576 RG 577



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 122/291 (41%), Gaps = 5/291 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS LI    K   ++ A  +L +M +    PD +T  VL+    K+G+++ A+  F+ + 
Sbjct: 164 YSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEML 223

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLG-MSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
             G +PD   YN +I  +  AG       SL      +G       Y A++   A+   +
Sbjct: 224 EAGCKPDVYTYNILISGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKI 283

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             A  +   +      PT+ +   L+    + G  ++A      ++  G  PD     S+
Sbjct: 284 EEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSL 343

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           I   GK+    +A  L  E+   G       YT L+  L +   I +A  +   ++  G 
Sbjct: 344 IDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGC 403

Query: 499 APPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGL 547
            P      ++ D  ++AG    A++    +EA+   + P++  +  +I+GL
Sbjct: 404 VPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEAR--GLAPNEVVYSALIHGL 452



 Score = 40.8 bits (94), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 70/156 (44%), Gaps = 6/156 (3%)

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G  P      +++    K   L++A++LL ++  +G  P   TYT L+D LG+ +   EA
Sbjct: 16  GCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEA 75

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ-MGPD--DFERI 543
            +L  +++  G A       +L     + G   K  QA    +        PD      +
Sbjct: 76  YKLFKEMALRGLALDTVCYTALIRELLQTG---KIPQASSVYKTMTSHGCVPDVVTLSTM 132

Query: 544 INGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
           I+GL   G +  A R+   MEA+G A +E +  ALI
Sbjct: 133 IDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALI 168


>gi|242047600|ref|XP_002461546.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
 gi|241924923|gb|EER98067.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
          Length = 532

 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/325 (23%), Positives = 143/325 (44%), Gaps = 3/325 (0%)

Query: 244 AELVLS---EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
           AE VL    +E    N   Y+ LI  +       +A RILK+M+ +G  P++VT  +L+ 
Sbjct: 175 AEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLID 234

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
              K+G    A+E F S+   G +PD   Y S++  Y   G      ++ D+M+ +G+  
Sbjct: 235 CLCKSGFHAEAREIFNSMIQSGPKPDATTYGSLLHGYATEGNLVEMNNVKDLMVQNGMRS 294

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
           +   +   + ++ +CG +  A      M+   F P + + T +++   + G  D A S F
Sbjct: 295 NHHTFSIEIYAYCKCGRLDEASLTFIKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSRF 354

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
             MI  G  P+     ++I  +      +KA  L  E+   G  P    +T ++D L + 
Sbjct: 355 CQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEELFYEMMDRGIPPDVTIFTAMIDRLFKE 414

Query: 481 QLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF 540
             + EA++L   +   G  P      ++   Y  AG   + ++ L  +     +     F
Sbjct: 415 GKVTEAQKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPTAVTF 474

Query: 541 ERIINGLLAGGFLQDAQRVHGLMEA 565
             +++G+++ G   D      L+++
Sbjct: 475 NTLLDGMVSMGLKPDVDTCKTLIDS 499



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/296 (22%), Positives = 126/296 (42%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV   + +ID   K   ++ AE +L++M +  I+P+  T   L+H Y  +G    A    
Sbjct: 155 NVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRIL 214

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + +   G +P+   YN +I     +G       + + MI SG +     Y +LL  +A  
Sbjct: 215 KEMSRDGQRPNVVTYNMLIDCLCKSGFHAEAREIFNSMIQSGPKPDATTYGSLLHGYATE 274

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G++     + ++M     +    + ++ + AY + G  D+A   F  M +LG  PD    
Sbjct: 275 GNLVEMNNVKDLMVQNGMRSNHHTFSIEIYAYCKCGRLDEASLTFIKMQQLGFMPDIVTY 334

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I    K   LD A++   ++  DG  P   T+T L+          +AE+L  ++ +
Sbjct: 335 TTVIDGLCKIGRLDDAMSRFCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEELFYEMMD 394

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGG 551
            G  P   I  ++ D   + G   +A +    +     +     +  +I+G    G
Sbjct: 395 RGIPPDVTIFTAMIDRLFKEGKVTEAQKLFDLMPRAGAKPNVVSYNTMIHGYFIAG 450



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 143/314 (45%), Gaps = 4/314 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  YS +I    KE  +  A  +  KM ++GI P++VT   ++    K   +D+A+   
Sbjct: 120 DVVSYSTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVL 179

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + +      P+   YNS+I  Y+++GQ    + ++  M   G   +   Y  L+    + 
Sbjct: 180 QQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLIDCLCKS 239

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G    A +I N M     +P   +   L+  Y   G+  +  +  D M++ G + +    
Sbjct: 240 GFHAEAREIFNSMIQSGPKPDATTYGSLLHGYATEGNLVEMNNVKDLMVQNGMRSNHHTF 299

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
           +  I AY K   LD+A    +++++ GF P   TYT ++D L ++  +++A     ++ +
Sbjct: 300 SIEIYAYCKCGRLDEASLTFIKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSRFCQMID 359

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFL 553
            G +P      +L   ++  G  +KA +   F E     + PD   F  +I+ L   G +
Sbjct: 360 DGLSPNIITFTTLIHGFSMYGKWEKAEEL--FYEMMDRGIPPDVTIFTAMIDRLFKEGKV 417

Query: 554 QDAQRVHGLMEAQG 567
            +AQ++  LM   G
Sbjct: 418 TEAQKLFDLMPRAG 431



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 52/248 (20%), Positives = 105/248 (42%), Gaps = 7/248 (2%)

Query: 325 PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQI 384
           PD   +  +I    +AG   LG + +  +I +G+      +  LLR+   C   R +  +
Sbjct: 11  PDIATFGILISCCCDAGCLNLGFAALGQIIKTGLRADAVAFTPLLRTL--CAKKRTSDAM 68

Query: 385 TNIM-RIEEF--QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK--PDDRCTASMI 439
             ++ R+ E    P + S + L++        ++A      M   G    PD    +++I
Sbjct: 69  NIVLRRMPELGCTPDVFSYSTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPDVVSYSTVI 128

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             + K+  + KA  L  ++   G  P   T   ++D L ++Q +++AE +L ++ +    
Sbjct: 129 HGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIM 188

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P      SL   Y  +G   +A++ L  +    ++     +  +I+ L   GF  +A+ +
Sbjct: 189 PNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLIDCLCKSGFHAEAREI 248

Query: 560 HGLMEAQG 567
              M   G
Sbjct: 249 FNSMIQSG 256


>gi|222637660|gb|EEE67792.1| hypothetical protein OsJ_25528 [Oryza sativa Japonica Group]
          Length = 475

 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 141/342 (41%), Gaps = 43/342 (12%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +     + N   Y+ L+DA+ +E   +    +LK M   GI P + T T+LV   S A +
Sbjct: 93  MPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVMENEGIEPTVGTYTILVDGLSAARD 152

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           + + +  FE ++S     D   Y+S+I AY  AG  +    + D  + +GIE +E  Y A
Sbjct: 153 ITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGA 212

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+  F + G +  A  +   M++                                    G
Sbjct: 213 LINGFCKIGQMEAAEMLVTDMQVR-----------------------------------G 237

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
              +     +MI  Y +KN++DKAL + + +EK G E    TY  L   L R   ++EA+
Sbjct: 238 VGINQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAK 297

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAG--IEKKALQALGFLEAKKEQMGPD--DFERI 543
            LL  + E G  P      +L  ++   G  +E + L    F E       P    +  +
Sbjct: 298 NLLRIMIEKGVRPNHVSYTTLISIHCNEGDMVEARRL----FREMAGNGAEPSLVTYNVM 353

Query: 544 INGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFN 585
           ++G +  G +++A+R    ME +G         AL+     N
Sbjct: 354 MDGYIKKGSIREAERFKNEMEKKGLVPDIYSYAALVHGHCVN 395



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/344 (22%), Positives = 157/344 (45%), Gaps = 6/344 (1%)

Query: 242 KVAEL--VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLV 299
           +VAE+  V+  E  +  V  Y+ L+D  +    +   E + ++M    +  D+   + ++
Sbjct: 120 RVAEMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVI 179

Query: 300 HMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
           + Y +AGN+ RA E F+    +G +P++  Y ++I  +   GQ +    LV  M   G+ 
Sbjct: 180 NAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVG 239

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
            ++ ++  ++  + +   V  A +I  IM     +  + +   L     +A   D+A++ 
Sbjct: 240 INQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNL 299

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
              MI  G +P+     ++I+ +  +  + +A  L  E+  +G EP   TY V++D   +
Sbjct: 300 LRIMIEKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIK 359

Query: 480 LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD- 538
              I EAE+   ++ + G  P      +L   +   G    AL+   F E K+    P+ 
Sbjct: 360 KGSIREAERFKNEMEKKGLVPDIYSYAALVHGHCVNGKVDVALRL--FEEMKQRGSKPNL 417

Query: 539 -DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
             +  +I+GL   G  ++A +++  M   G    + L  AL+ S
Sbjct: 418 VAYTALISGLAKEGRSEEAFQLYDNMLGDGLTPDDALYSALVGS 461



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 86/176 (48%), Gaps = 4/176 (2%)

Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
           S +++V+ Y ++G    AR   D M R G K +  C  S++ AY ++   D+   +L  +
Sbjct: 69  SASVVVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVM 128

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
           E +G EP   TYT+LVD L   + I + E +  ++     +       S+ + Y RAG  
Sbjct: 129 ENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNV 188

Query: 519 KKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572
           ++A +   F E     + P++  +  +ING    G ++ A+ +   M+ +G   ++
Sbjct: 189 RRASEV--FDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQ 242


>gi|115456295|ref|NP_001051748.1| Os03g0824100 [Oryza sativa Japonica Group]
 gi|113550219|dbj|BAF13662.1| Os03g0824100, partial [Oryza sativa Japonica Group]
          Length = 691

 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 129/302 (42%), Gaps = 4/302 (1%)

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           + +E +L+ M E G++PD  +   +V  ++ AGNL R  E F  + + G  PD   Y  +
Sbjct: 91  DQSEMLLRTMLEAGVLPDTASYRHIVDAFAGAGNLSRVAELFAEMSATGHTPDPSAYLGL 150

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           + A+   G     ++++  M   G   +   Y  LL  + + G   G  ++   MR    
Sbjct: 151 MEAHTLVGATAEAVAVLRQMQADGCPPTAATYRVLLDLYGRQGRFDGVRELFREMRT-TV 209

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD-DRCTASMIAAYGKKNLLDKAL 452
            P   +  +L   +G  G   +    F  M+    +PD D C   M+A  G+  L + A 
Sbjct: 210 PPDTATYNVLFRVFGDGGFFKEVVELFQDMLHSEVEPDIDTCENVMVAC-GRGGLHEDAR 268

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
            +L  +  +G  P    YT LV+ LG   +  EA      ++E+G  P  +   +L + +
Sbjct: 269 EVLDYITTEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANAF 328

Query: 513 ARAGIEKKALQALGFLEAKKE-QMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAAS 571
           A+ G+ ++A      +      Q   D F+ +I     G  L DA + +  M    F   
Sbjct: 329 AKGGLFQEAEAIFSRMTNNAAIQKDKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPD 388

Query: 572 ER 573
           ER
Sbjct: 389 ER 390



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 83/189 (43%), Gaps = 1/189 (0%)

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           EDA  +L  +   G+VP     T LV     A   + A  AF  +   G  P  + YN++
Sbjct: 265 EDAREVLDYITTEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNAL 324

Query: 334 IMAYVNAGQPKLGMSLVDMMIT-SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
             A+   G  +   ++   M   + I++ ++ + AL+ ++ Q   +  A +    MR   
Sbjct: 325 ANAFAKGGLFQEAEAIFSRMTNNAAIQKDKDSFDALIEAYCQGAQLDDAVKAYMEMRKSR 384

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
           F P   S   ++ AY  AG  D+++  F+ +  +   P       M++ Y + +    A 
Sbjct: 385 FNPDERSLEGVLNAYCIAGVIDESKEQFEELQSMVTVPSIIAYCMMLSLYARNDRWTDAY 444

Query: 453 NLLLELEKD 461
           +LL E++ +
Sbjct: 445 DLLEEMKTN 453



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 99/235 (42%), Gaps = 7/235 (2%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L          ++   + + M  + + PDI T   ++    + G  + A+E  + + 
Sbjct: 216 YNVLFRVFGDGGFFKEVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDAREVLDYIT 275

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G  P  K Y  ++ A  +A   +      +MM   G   + E Y AL  +FA+ G  +
Sbjct: 276 TEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANAFAKGGLFQ 335

Query: 380 GA----GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
            A     ++TN   I++ + + ++   L+EAY Q    D A   +  M +    PD+R  
Sbjct: 336 EAEAIFSRMTNNAAIQKDKDSFDA---LIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSL 392

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
             ++ AY    ++D++     EL+     P    Y +++    R     +A  LL
Sbjct: 393 EGVLNAYCIAGVIDESKEQFEELQSMVTVPSIIAYCMMLSLYARNDRWTDAYDLL 447



 Score = 39.3 bits (90), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 63/134 (47%), Gaps = 4/134 (2%)

Query: 241 FKVAELVLS----EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTST 296
           F+ AE + S      + Q +   +  LI+A+ +   L+DA +   +M ++   PD  +  
Sbjct: 334 FQEAEAIFSRMTNNAAIQKDKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLE 393

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
            +++ Y  AG +D +KE FE L+S    P    Y  M+  Y    +      L++ M T+
Sbjct: 394 GVLNAYCIAGVIDESKEQFEELQSMVTVPSIIAYCMMLSLYARNDRWTDAYDLLEEMKTN 453

Query: 357 GIERSEEIYLALLR 370
               + ++  ++++
Sbjct: 454 RASSTHQVIASMIK 467


>gi|410109915|gb|AFV61037.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           brasiliensis]
          Length = 427

 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 120/261 (45%), Gaps = 6/261 (2%)

Query: 218 LQPSRIDWINLLD---RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           L+PS + +  L++   RL + +     K A L       Q +V  YS LI+   KE+ ++
Sbjct: 169 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLA---SGVQPDVYTYSVLINGLCKESKMD 225

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           DA  +  +M   G+VP+ VT T L+  + K G +D A E ++ + S    PD   YN++I
Sbjct: 226 DANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLI 285

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
                 G  K    L+D M   G++  +  Y  L+    + GD+  A +    M  E   
Sbjct: 286 YGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIX 345

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
               + T L+    Q G    A      M+ +G KP+ R    +I  + KK  + K   L
Sbjct: 346 LDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPNXRTYTMIINEFCKKGDVWKGSKL 405

Query: 455 LLELEKDGFEPGPATYTVLVD 475
           L E+++DG  P   TY VL++
Sbjct: 406 LKEMQRDGHVPSVVTYNVLMN 426



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/253 (21%), Positives = 119/253 (47%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +++   + +V  Y+ L++ + +   L++  R+   M  +G+ PD+ T +VL++   K   
Sbjct: 164 ITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESK 223

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D A E F+ +   G  P+   + ++I  +   G+  L M +   M++  +      Y  
Sbjct: 224 MDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNT 283

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    + GD++ A  + + M ++  +P   + T L++   + GD D A  +   MI+  
Sbjct: 284 LIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQEN 343

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
              DD    ++I+   ++     A  +L E+   G +P   TYT++++   +   + +  
Sbjct: 344 IXLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPNXRTYTMIINEFCKKGDVWKGS 403

Query: 488 QLLGKISELGEAP 500
           +LL ++   G  P
Sbjct: 404 KLLKEMQRDGHVP 416



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 89/195 (45%)

Query: 281 KKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNA 340
           K + E G    +    +L+H + K G++  A+  F+++   G +P    YN+++  Y+  
Sbjct: 127 KXILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 186

Query: 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
           G    G  L   M+ SG++     Y  L+    +   +  A ++ + M ++   P   + 
Sbjct: 187 GDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTF 246

Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
           T L++ + + G  D A   +  M+     PD     ++I    KK  L +A +L+ E+  
Sbjct: 247 TTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHHLIDEMSM 306

Query: 461 DGFEPGPATYTVLVD 475
            G +P   TYT L+D
Sbjct: 307 KGLKPDKITYTTLID 321



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/267 (20%), Positives = 111/267 (41%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E  +  ++  ++ L+    K+  +  A+ +   + + G+ P +V+   L++ Y + G+LD
Sbjct: 131 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 190

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
                  ++ + G QPD   Y+ +I       +      L D M+  G+  +   +  L+
Sbjct: 191 EGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLI 250

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               + G V  A +I   M  +   P L +   L+    + GD  QA    D M   G K
Sbjct: 251 DGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLK 310

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     ++I    K+  LD A      + ++        YT L+  L +     +AE++
Sbjct: 311 PDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIXLDDVAYTALISGLCQEGRSVDAEKM 370

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAG 516
           L ++  +G  P  +    + + + + G
Sbjct: 371 LREMLSVGLKPNXRTYTMIINEFCKKG 397



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 67/330 (20%), Positives = 134/330 (40%), Gaps = 6/330 (1%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGI-VPDIVTSTVLVHMYSKAGNLDRAK 312
           ++++  +S LI A+ +   L DA    +   E+   VP      VL H+  K        
Sbjct: 65  RSDIFVFSGLITAYLESEFLRDAIECYRLTREHKFWVPFDTCRKVLEHL-MKLKYFKLVW 123

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
             ++ +   G+      +N ++  +   G  ++  S+ D +   G+  S   Y  L+  +
Sbjct: 124 GFYKXILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGY 183

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + GD+    ++ + M     QP + + ++L+    +    D A   FD M+  G  P+ 
Sbjct: 184 IRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNG 243

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               ++I  + K   +D A+ +   +      P   TY  L+  L +   + +A  L+ +
Sbjct: 244 VTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHHLIDE 303

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAG 550
           +S  G  P      +L D   + G    A +        +E +  DD  +  +I+GL   
Sbjct: 304 MSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRK--RMIQENIXLDDVAYTALISGLCQE 361

Query: 551 GFLQDAQRVHGLMEAQGFAASERLKVALIS 580
           G   DA+++   M + G   + R    +I+
Sbjct: 362 GRSVDAEKMLREMLSVGLKPNXRTYTMIIN 391


>gi|297795313|ref|XP_002865541.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311376|gb|EFH41800.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 711

 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 90/382 (23%), Positives = 162/382 (42%), Gaps = 35/382 (9%)

Query: 192 KLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEE 251
           +L+ D I+   K  DPS  L    +LL  +             Q T L  K A LV    
Sbjct: 272 QLVNDIIMGFAKSGDPSRAL----QLLGMA-------------QATGLSAKTATLV---- 310

Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311
                      +I A A      +AE + +++ ++GI P       L+  Y K G L  A
Sbjct: 311 ----------SIISALANSGRTLEAEALFEELRQSGIKPRTKAYNALLKGYVKTGPLKDA 360

Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
           +     +   G  PD+  Y+ +I AYVNAG+ +    ++  M T  ++ +  ++  LL  
Sbjct: 361 ELMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMETGDVQPNSFVFSRLLAG 420

Query: 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
           +   G+ +   Q+   M+    +P  +   ++++ +G+    D A + FD M+  G +PD
Sbjct: 421 YRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPD 480

Query: 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
                ++I  + K      A  +   +E+ G  P   TY ++++  G  +  ++ ++LLG
Sbjct: 481 RVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLG 540

Query: 492 KISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLA 549
           K+   G  P      +L D+Y ++G    A++ L   E K   + P    +  +IN    
Sbjct: 541 KMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLE--EMKSVGLKPSSTMYNALINAYAQ 598

Query: 550 GGFLQDAQRVHGLMEAQGFAAS 571
            G  + A     +M + G   S
Sbjct: 599 RGLSEQAVNAFRVMTSDGLKPS 620



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 119/242 (49%), Gaps = 18/242 (7%)

Query: 216 ELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVR--------DYSKLIDAH 267
           E ++P R+ W  L+D         + K    +++EE F+   R         Y+ +I+++
Sbjct: 475 EGIEPDRVTWNTLID--------CHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSY 526

Query: 268 AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK 327
             +   +D +R+L KM   GI+P++VT T LV +Y K+G  + A E  E ++S G +P  
Sbjct: 527 GDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSS 586

Query: 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNI 387
            +YN++I AY   G  +  ++   +M + G++ S     +L+ +F +      A  +   
Sbjct: 587 TMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQY 646

Query: 388 MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA--YGKK 445
           M+    +P + + T L++A  +     +    ++ MI  G KPD +  + + +A  Y K+
Sbjct: 647 MKENGVKPDVVTYTTLMKALIRVDKFQKVPGVYEEMIMSGCKPDRKARSMLRSALRYMKQ 706

Query: 446 NL 447
            L
Sbjct: 707 TL 708



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 67/322 (20%), Positives = 144/322 (44%), Gaps = 2/322 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDA--ERILKKMNENGIVPDIVTSTVLVHMYSKA 305
           + ++ +Q++  +YS +I +  + N ++    +R+ K++  + +  D+     ++  ++K+
Sbjct: 225 MRQDGYQSDFVNYSLVIQSLTRCNKIDSVMLQRLYKEIERDKLELDVQLVNDIIMGFAKS 284

Query: 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
           G+  RA +     ++ G         S+I A  N+G+     +L + +  SGI+   + Y
Sbjct: 285 GDPSRALQLLGMAQATGLSAKTATLVSIISALANSGRTLEAEALFEELRQSGIKPRTKAY 344

Query: 366 LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
            ALL+ + + G ++ A  + + M      P   + +LL++AY  AG  + AR     M  
Sbjct: 345 NALLKGYVKTGPLKDAELMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMET 404

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
              +P+    + ++A Y  +    K   +L E++  G +P    Y V++D  G+   ++ 
Sbjct: 405 GDVQPNSFVFSRLLAGYRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDH 464

Query: 486 AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIIN 545
           A     ++   G  P      +L D + + G    A +    +E +        +  +IN
Sbjct: 465 AMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMIN 524

Query: 546 GLLAGGFLQDAQRVHGLMEAQG 567
                    D +R+ G M++QG
Sbjct: 525 SYGDQERWDDMKRLLGKMKSQG 546



 Score = 42.0 bits (97), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 6/119 (5%)

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
           ++I A  + N ++KALNL+  + +DG++     Y++++  L R   I+    +L ++ + 
Sbjct: 204 ALIGACARNNDIEKALNLISRMRQDGYQSDFVNYSLVIQSLTRCNKIDSV--MLQRLYKE 261

Query: 497 GEAPPFKIQVSLCD----MYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGG 551
            E    ++ V L +     +A++G   +ALQ LG  +A            II+ L   G
Sbjct: 262 IERDKLELDVQLVNDIIMGFAKSGDPSRALQLLGMAQATGLSAKTATLVSIISALANSG 320


>gi|115482788|ref|NP_001064987.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|22165069|gb|AAM93686.1| putative leaf protein [Oryza sativa Japonica Group]
 gi|31432904|gb|AAP54480.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|113639596|dbj|BAF26901.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|125575306|gb|EAZ16590.1| hypothetical protein OsJ_32064 [Oryza sativa Japonica Group]
          Length = 454

 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 138/312 (44%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N   Y+ ++  +      E A  I +KM  +GI PD+VT   L+    K G    A++ F
Sbjct: 76  NCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCKNGKCTEARKIF 135

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           +S+   G +PD   Y +++  Y + G       L+ +M+ +G++    ++  L+ ++ + 
Sbjct: 136 DSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDHHVFNILICAYTKQ 195

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
             V     + + MR +   P   +   +++   + G  D A  NF+ MI  G  P+    
Sbjct: 196 EKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMIDKGLTPNVVVY 255

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            S+I A    +  +KA  L+ E+   G  P    +  ++D L +   + E+++L   +  
Sbjct: 256 TSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTILDSLCKEGRVIESKKLFDLLGH 315

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
           +G  P      +L D Y  AG    A++ L  + +   +     +  +ING      ++D
Sbjct: 316 IGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVGLKPDSVTYSTLINGYCKINRMED 375

Query: 556 AQRVHGLMEAQG 567
           A  +   ME+ G
Sbjct: 376 ALALFKEMESNG 387



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 120/251 (47%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++ +   Q +   ++ LI A+ K+  +++   +  KM + G+ P+ V    ++    K G
Sbjct: 172 LMVQNGMQLDHHVFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLG 231

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            LD A   FE +   G  P+  VY S+I A     + +    L+  ++  GI  +   + 
Sbjct: 232 RLDDAMLNFEQMIDKGLTPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFN 291

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            +L S  + G V  + ++ +++      P + + + L++ Y  AG  D A      M+ +
Sbjct: 292 TILDSLCKEGRVIESKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSV 351

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G KPD    +++I  Y K N ++ AL L  E+E +G  P   TY +++  L R +    A
Sbjct: 352 GLKPDSVTYSTLINGYCKINRMEDALALFKEMESNGVNPDIITYNIILHGLFRTRRTAAA 411

Query: 487 EQLLGKISELG 497
           ++L  +I+E G
Sbjct: 412 KELYARITESG 422



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 112/253 (44%), Gaps = 4/253 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ +ID   KE  ++ A     +M +  + PD VT   ++   SKA  +DRA E  
Sbjct: 10  DVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAMDRAMEVL 69

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +      P+   YNS++  Y ++GQ +  + +   M + GIE     Y +L+    + 
Sbjct: 70  TVM----VMPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCKN 125

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G    A +I + M     +P + +   L+  Y   G   +       M++ G + D    
Sbjct: 126 GKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDHHVF 185

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +I AY K+  +D+ + +  ++ + G  P    Y  ++D L +L  +++A     ++ +
Sbjct: 186 NILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMID 245

Query: 496 LGEAPPFKIQVSL 508
            G  P   +  SL
Sbjct: 246 KGLTPNVVVYTSL 258



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 61/288 (21%), Positives = 116/288 (40%), Gaps = 35/288 (12%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +  +  + +V  Y+ L+D   K     +A +I   M + G+ PDI T   L+H Y+  G 
Sbjct: 103 MCSDGIEPDVVTYNSLMDYLCKNGKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGA 162

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYV----------------------NA----- 340
           L    +    +  +G Q D  V+N +I AY                       NA     
Sbjct: 163 LVEMHDLLALMVQNGMQLDHHVFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRT 222

Query: 341 ---GQPKLG-----MSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
              G  KLG     M   + MI  G+  +  +Y +L+ +         A ++   +  + 
Sbjct: 223 VIDGLCKLGRLDDAMLNFEQMIDKGLTPNVVVYTSLIHALCTYDKWEKAEELIFEILDQG 282

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P +     ++++  + G   +++  FD +  +G  PD    +++I  Y     +D A+
Sbjct: 283 INPNIVFFNTILDSLCKEGRVIESKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAM 342

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
            LL  +   G +P   TY+ L++   ++  + +A  L  ++   G  P
Sbjct: 343 KLLTGMVSVGLKPDSVTYSTLINGYCKINRMEDALALFKEMESNGVNP 390



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/211 (21%), Positives = 92/211 (43%), Gaps = 4/211 (1%)

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL 349
           PD+V+   ++    K G++D+A   +  +      PD   YNS+I A   A      M +
Sbjct: 9   PDVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAMDRAMEV 68

Query: 350 VDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409
           + +M+          Y +++  +   G    A  I   M  +  +P + +   L++   +
Sbjct: 69  LTVMVMPNCFT----YNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCK 124

Query: 410 AGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPAT 469
            G   +AR  FD M++ G KPD     +++  Y  K  L +  +LL  + ++G +     
Sbjct: 125 NGKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDHHV 184

Query: 470 YTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
           + +L+    + + ++E   +  K+ + G  P
Sbjct: 185 FNILICAYTKQEKVDEVVLVFSKMRQQGLTP 215



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 69/157 (43%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           + P+ + +  +LD L ++   +  K    +L       +V  YS LID +     ++ A 
Sbjct: 283 INPNIVFFNTILDSLCKEGRVIESKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAM 342

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
           ++L  M   G+ PD VT + L++ Y K   ++ A   F+ + S+G  PD   YN ++   
Sbjct: 343 KLLTGMVSVGLKPDSVTYSTLINGYCKINRMEDALALFKEMESNGVNPDIITYNIILHGL 402

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
               +      L   +  SG +     Y  +L  FA+
Sbjct: 403 FRTRRTAAAKELYARITESGTQLELSTYNIILMDFAK 439


>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
 gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 144/316 (45%), Gaps = 25/316 (7%)

Query: 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320
           + LID +AK+  L+ A  +  KM +     D+V+ T LV  YS  G+ + A + F  +R 
Sbjct: 80  NALIDMYAKQGKLDCAIMVFSKMVDK----DVVSWTSLVTGYSHNGSYEEAIKLFCKMRI 135

Query: 321 HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRG 380
            G  PD+    S++ A         G  +   ++ SG+E S  +  +L+  +A+CG +  
Sbjct: 136 SGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVDNSLVTMYAKCGSIVD 195

Query: 381 AGQITNIMRIEEFQPTLE--SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
           A +  + M      PT +  S T L+  Y Q G    +   +D MI  G KPD      +
Sbjct: 196 ANRAFDNM------PTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKPDYITFIGL 249

Query: 439 IAAYGKKNLLDKALNLLLELEK-DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           + A     LL         ++K  G +PGP  Y  ++D LGR   + EA+ LL ++    
Sbjct: 250 LFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAEAKGLLNQMVVAP 309

Query: 498 EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKK----EQMGPDDFERIINGLLAGGFL 553
           +A  +K  ++ C ++       K L+ LG + AK     E M    +  + N   A G  
Sbjct: 310 DAVVWKALLAACRVH-------KELE-LGEMAAKNLFELEPMNSMPYVMLSNMYSAAGKW 361

Query: 554 QDAQRVHGLMEAQGFA 569
           +DA R+  LM ++G  
Sbjct: 362 EDAARIRRLMRSRGIC 377



 Score = 40.8 bits (94), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 58/260 (22%), Positives = 110/260 (42%), Gaps = 25/260 (9%)

Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
           F+ +RS   + D+    S++ ++ +    +  +S+  ++I +G E  + +  AL+  +A+
Sbjct: 29  FQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAISVHCLIIKTGFEAYKLVNNALIDMYAK 88

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
            G +  A  + + M  ++    + S T LV  Y   G  ++A   F  M   G  PD   
Sbjct: 89  QGKLDCAIMVFSKMVDKD----VVSWTSLVTGYSHNGSYEEAIKLFCKMRISGVYPDQIA 144

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
            AS+++A  +  ++D    +   L K G E   +    LV    +   I +A +    + 
Sbjct: 145 VASVLSACAELTVMDFGQQIHATLVKSGLESSLSVDNSLVTMYAKCGSIVDANRAFDNM- 203

Query: 495 ELGEAPPFKIQVSLCDM---YARAGIEKKALQALGFLEAKKEQMGPDDFERI-------I 544
                 P +  +S   +   YA+ G  K +LQ    + A   +  PD    I        
Sbjct: 204 ------PTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTK--PDYITFIGLLFACSH 255

Query: 545 NGLLAGG--FLQDAQRVHGL 562
           NGLL  G  + +   +V+G+
Sbjct: 256 NGLLGSGRAYFEAMDKVYGI 275


>gi|356561677|ref|XP_003549106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 511

 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 138/320 (43%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L  + FQ +   Y  LI+   K    +   R+L+K+  + + PD+V    +++   K   
Sbjct: 153 LVAQGFQLDQVSYGTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKL 212

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L  A + +  +   G  PD   Y ++I  +   G  K   SL++ M    I  +   +  
Sbjct: 213 LGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNI 272

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+ + ++ G ++ A  +  +M     +P + +   L++ Y    +   A+  F  M + G
Sbjct: 273 LIDALSKEGKMKEAKILLAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRG 332

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD +C  +MI    K  ++D+A++L  E++     P   TY  L+D L +   +  A 
Sbjct: 333 VTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAI 392

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
            L  ++ E G  P       L D   ++G  + A +    L AK   +    +  +IN L
Sbjct: 393 ALCKRMKEQGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINRL 452

Query: 548 LAGGFLQDAQRVHGLMEAQG 567
              GF  +A  +   ME +G
Sbjct: 453 CKAGFFDEALDLKSKMEDKG 472



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/283 (20%), Positives = 116/283 (40%), Gaps = 4/283 (1%)

Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338
           + K+   NGI PD+ T ++L++ +    ++  A   F ++   GF P+    N++I    
Sbjct: 79  LFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSVFANILKRGFHPNAITLNTLIKGLC 138

Query: 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398
             G+ K  +   D ++  G +  +  Y  L+    + G+ +   ++   +     +P + 
Sbjct: 139 FRGEIKKALYFHDQLVAQGFQLDQVSYGTLINGLCKTGETKAVARLLRKLEGHSVKPDVV 198

Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
               ++ +  +      A   +  MI  G  PD     ++I  +     L +A +LL E+
Sbjct: 199 MYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEM 258

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
           +     P   T+ +L+D L +   + EA+ LL  + +    P      SL D Y      
Sbjct: 259 KLKNINPNVCTFNILIDALSKEGKMKEAKILLAVMMKACIKPDVFTYNSLIDGYFLVDEV 318

Query: 519 KKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRV 559
           K A     F    +  + PD   +  +INGL     + +A  +
Sbjct: 319 KHAKYV--FYSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSL 359



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/282 (21%), Positives = 121/282 (42%), Gaps = 36/282 (12%)

Query: 210 LLAEWK-ELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHA 268
           LL E K + + P+   +  L+D L ++      K+   V+ +   + +V  Y+ LID + 
Sbjct: 254 LLNEMKLKNINPNVCTFNILIDALSKEGKMKEAKILLAVMMKACIKPDVFTYNSLIDGYF 313

Query: 269 KENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKK 328
             + ++ A+ +   M + G+ PD+   T +++   K   +D A   FE ++     PD  
Sbjct: 314 LVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIV 373

Query: 329 VYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIM 388
            YNS+I                      G+ ++      L R+ A C  ++  G      
Sbjct: 374 TYNSLI---------------------DGLCKNHH----LERAIALCKRMKEQG------ 402

Query: 389 RIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLL 448
                QP + S T+L++   ++G  + A+  F  ++  G+  +      +I    K    
Sbjct: 403 ----IQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINRLCKAGFF 458

Query: 449 DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           D+AL+L  ++E  G  P   T+ +++  L      ++AE++L
Sbjct: 459 DEALDLKSKMEDKGCMPDAVTFDIIIRALFEKDENDKAEKIL 500



 Score = 45.4 bits (106), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 11/152 (7%)

Query: 187 ITGKCKL-ITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAE 245
           I G CK  + D+ +SL +E        + K ++ P  + + +L+D L  +N  L   +A 
Sbjct: 344 INGLCKTKMVDEAMSLFEE-------MKHKNMI-PDIVTYNSLIDGLC-KNHHLERAIAL 394

Query: 246 LV-LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK 304
              + E+  Q +V  Y+ L+D   K   LEDA+ I +++   G   ++   TVL++   K
Sbjct: 395 CKRMKEQGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINRLCK 454

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
           AG  D A +    +   G  PD   ++ +I A
Sbjct: 455 AGFFDEALDLKSKMEDKGCMPDAVTFDIIIRA 486


>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
          Length = 1007

 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 144/326 (44%), Gaps = 4/326 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ LI        L+ A  +  +M+ +G+ P+ VT   L+++  +   +  A    
Sbjct: 354 NVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVL 413

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +  +G  P+   YN MI  Y   G PK  M +++ M+  G   +   Y  +++ +   
Sbjct: 414 NLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDS 473

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G+   A +I ++MR    +P   S T L+  + +    + A   F+ M+  G  P++   
Sbjct: 474 GNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTY 533

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I  Y K   LD A +LL  +++ G  P   TY VL+  L +    + AE+L   + E
Sbjct: 534 TALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIE 593

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFL 553
            G  P      ++ D   + G    AL+   F +  ++   P+   +  +I  L   G +
Sbjct: 594 EGIFPNVVTYTAMIDGLCKNGSTSLALEM--FNKMIEQGCLPNLLTYSSLIRALGQEGKV 651

Query: 554 QDAQRVHGLMEAQGFAASERLKVALI 579
           ++A+ +   +E  G    E   V +I
Sbjct: 652 EEAENLFAELERHGLIPDEITYVKMI 677



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 121/288 (42%), Gaps = 4/288 (1%)

Query: 215 KELLQPSRIDWINLLDRLREQN--TQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC 272
           KE  +P+ + +  L++ L +     + +  + E++L            +  I A     C
Sbjct: 278 KEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMIL--HGILPTAHTCTGPIIALCDMGC 335

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
            EDA R+   M   G  P++ T T L+     +G L  A   F  +   G  P+   YN+
Sbjct: 336 YEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNA 395

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I   V   + K    ++++M  +G   +   Y  +++ +   GD + A  + N M    
Sbjct: 396 LINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRG 455

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
               L +   +++ Y  +G+   A    D M   G KPD+     +I  + K + ++ A 
Sbjct: 456 HSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAF 515

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
            L  E+  DG  P   TYT L+D   + + ++ A  LL  +   G  P
Sbjct: 516 GLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRP 563



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 116/262 (44%), Gaps = 3/262 (1%)

Query: 242 KVAELVLS---EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVL 298
           K A LV++   +     N+  Y+ +I  +        A RIL  M + G  PD  + T L
Sbjct: 442 KKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTEL 501

Query: 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
           +  + K   ++ A   F  +   G  P++  Y ++I  Y    +     SL++ M  SG 
Sbjct: 502 ICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGC 561

Query: 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418
             + + Y  L+    +  +  GA ++  +M  E   P + + T +++   + G    A  
Sbjct: 562 RPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALE 621

Query: 419 NFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLG 478
            F+ MI  G  P+    +S+I A G++  +++A NL  ELE+ G  P   TY  +++   
Sbjct: 622 MFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYI 681

Query: 479 RLQLINEAEQLLGKISELGEAP 500
               +  A   LG++ + G  P
Sbjct: 682 MSGKVEHAFNFLGRMIKAGCQP 703



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 73/337 (21%), Positives = 139/337 (41%), Gaps = 15/337 (4%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +++E  + N   YS LI+       + +A  ++++M  +GI+P   T T  +      G 
Sbjct: 276 MAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGC 335

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            + A   F  +++ G +P+   Y ++I     +G  K+ + L   M   G+  +   Y A
Sbjct: 336 YEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNA 395

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    +   ++ A  + N+M      P + +   +++ Y   GDP +A    + M++ G
Sbjct: 396 LINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRG 455

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
           H  +     ++I  Y        AL +L  +   G +P   +YT L+    ++  +  A 
Sbjct: 456 HSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAF 515

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
            L  ++ + G  P      +L D Y +   ++K   A   LE  K   G     +  N L
Sbjct: 516 GLFNEMVDDGLCPNEVTYTALIDGYCK---DEKLDTATSLLEHMKRS-GCRPNVQTYNVL 571

Query: 548 LAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTF 584
                      +HGL +   F+ +E L   +I    F
Sbjct: 572 -----------IHGLTKQNNFSGAEELCKVMIEEGIF 597



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/326 (21%), Positives = 122/326 (37%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           +LS+   +  +  YS L+   ++            +M   G+ P+++    +++   K G
Sbjct: 170 MLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDG 229

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           N+  A+   + +      PD   Y SMI+ +         + + + M   G E +   Y 
Sbjct: 230 NVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYS 289

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+      G V  A  +   M +    PT  +CT  + A    G  + A   F  M   
Sbjct: 290 TLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNK 349

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G +P+     ++I+      LL  A+ L   + +DG  P   TY  L++ L   + I  A
Sbjct: 350 GCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYA 409

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
             +L  +   G +P       +   Y   G  KKA+  +  +  +        +  II G
Sbjct: 410 FVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKG 469

Query: 547 LLAGGFLQDAQRVHGLMEAQGFAASE 572
               G    A R+  LM   G    E
Sbjct: 470 YCDSGNTTSALRILDLMRDGGCKPDE 495



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 76/368 (20%), Positives = 154/368 (41%), Gaps = 6/368 (1%)

Query: 220 PSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERI 279
           P+ + +  L++ L E     Y  V   ++       N+  Y+++I  +      + A  +
Sbjct: 388 PNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLV 447

Query: 280 LKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339
           +  M + G   ++VT   ++  Y  +GN   A    + +R  G +PD+  Y  +I  +  
Sbjct: 448 MNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCK 507

Query: 340 AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLES 399
             + +    L + M+  G+  +E  Y AL+  + +   +  A  +   M+    +P +++
Sbjct: 508 ISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQT 567

Query: 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELE 459
             +L+    +  +   A      MI  G  P+     +MI    K      AL +  ++ 
Sbjct: 568 YNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMI 627

Query: 460 KDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEK 519
           + G  P   TY+ L+  LG+   + EAE L  ++   G  P     V + + Y  +G  +
Sbjct: 628 EQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVE 687

Query: 520 KALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLME-----AQGFAASERL 574
            A   LG +     Q     +  +I GL     L D QR+  L +     + G+  +++ 
Sbjct: 688 HAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLAD-QRLAALPDVVPNCSFGYQTTDQD 746

Query: 575 KVALISSQ 582
            V+++S++
Sbjct: 747 AVSVMSAK 754



 Score = 45.4 bits (106), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 52/262 (19%), Positives = 107/262 (40%), Gaps = 4/262 (1%)

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           + R     + L   G +     Y+++++     G     M     M++ G++ +  IY A
Sbjct: 161 MARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNA 220

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++ +  + G+V  A  I   +   E  P   + T ++  + +  D D A   F+ M + G
Sbjct: 221 VINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEG 280

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            +P+    +++I        +++A +L+ E+   G  P   T T  +  L  +    +A 
Sbjct: 281 CEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAW 340

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIIN 545
           +L   +   G  P      +L      +G+ K A+    F    ++ + P+   +  +IN
Sbjct: 341 RLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGL--FHRMSRDGVFPNTVTYNALIN 398

Query: 546 GLLAGGFLQDAQRVHGLMEAQG 567
            L+    ++ A  V  LM   G
Sbjct: 399 ILVENRRIKYAFVVLNLMGRNG 420


>gi|15234269|ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g11690
 gi|4539460|emb|CAB39940.1| putative protein [Arabidopsis thaliana]
 gi|7267869|emb|CAB78212.1| putative protein [Arabidopsis thaliana]
 gi|91806660|gb|ABE66057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332657639|gb|AEE83039.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 566

 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 121/257 (47%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E     N+  Y+ LI    +E  L +A +++ +M  +GI P+++T   L+  +   G 
Sbjct: 294 MRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGK 353

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L +A      L+S G  P    YN ++  +   G       +V  M   GI+ S+  Y  
Sbjct: 354 LGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTI 413

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+ +FA+  ++  A Q+   M      P + + ++L+  +   G  ++A   F  M+   
Sbjct: 414 LIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKN 473

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            +P++    +MI  Y K+    +AL LL E+E+    P  A+Y  +++ L + +   EAE
Sbjct: 474 CEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAE 533

Query: 488 QLLGKISELGEAPPFKI 504
           +L+ K+ + G  P   I
Sbjct: 534 RLVEKMIDSGIDPSTSI 550



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 149/344 (43%), Gaps = 16/344 (4%)

Query: 201 LEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLR-----EQNTQLYFKVAELVLSEESFQ 254
           +EK  D   LL E  E    P+ + +  L+D        E+   L+F++ +L L      
Sbjct: 179 IEKSFD---LLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLV----- 230

Query: 255 TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA 314
            N R Y+ LI+   K    +    + +KM E+G+ P++ T   +++   K G    A + 
Sbjct: 231 ANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQV 290

Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
           F+ +R  G   +   YN++I       +      +VD M + GI  +   Y  L+  F  
Sbjct: 291 FDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCG 350

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
            G +  A  +   ++     P+L +  +LV  + + GD   A      M   G KP    
Sbjct: 351 VGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVT 410

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
              +I  + + + ++KA+ L L +E+ G  P   TY+VL+        +NEA +L   + 
Sbjct: 411 YTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMV 470

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
           E    P   I  ++   Y + G   +AL+ L  +E K  ++ P+
Sbjct: 471 EKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEK--ELAPN 512



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 134/312 (42%), Gaps = 8/312 (2%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  +  LI    +   +E +  +L ++ E G  P++V  T L+    K G +++AK+ F
Sbjct: 162 DVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLF 221

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G   +++ Y  +I      G  K G  + + M   G+  +   Y  ++    + 
Sbjct: 222 FEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKD 281

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G  + A Q+ + MR       + +   L+    +    ++A    D M   G  P+    
Sbjct: 282 GRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITY 341

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I  +     L KAL+L  +L+  G  P   TY +LV    R    + A +++ ++ E
Sbjct: 342 NTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEE 401

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG--PD--DFERIINGLLAGG 551
            G  P       L D +AR+   +KA+Q    L    E++G  PD   +  +I+G    G
Sbjct: 402 RGIKPSKVTYTILIDTFARSDNMEKAIQ----LRLSMEELGLVPDVHTYSVLIHGFCIKG 457

Query: 552 FLQDAQRVHGLM 563
            + +A R+   M
Sbjct: 458 QMNEASRLFKSM 469



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 64/306 (20%), Positives = 123/306 (40%), Gaps = 34/306 (11%)

Query: 271 NCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVY 330
           N    A+ +L ++    I     TS+ L+H  +++   + +K  F            ++Y
Sbjct: 53  NLFSHAQSLLLQVISGKIHSQFFTSSSLLHYLTES---ETSKTKF------------RLY 97

Query: 331 NSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL------RSFAQCGDVRGAGQI 384
             +I +YV +    L +S  + M+ +G       +  LL       SF Q        + 
Sbjct: 98  EVIINSYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNENKS 157

Query: 385 TNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL---GHKPDDRCTASMIAA 441
             ++ +  F   ++ C        +AG+ +++   FD +I L   G  P+     ++I  
Sbjct: 158 KVVLDVYSFGILIKGCC-------EAGEIEKS---FDLLIELTEFGFSPNVVIYTTLIDG 207

Query: 442 YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
             KK  ++KA +L  E+ K G      TYTVL++ L +  +  +  ++  K+ E G  P 
Sbjct: 208 CCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPN 267

Query: 502 FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHG 561
                 + +   + G  K A Q    +  +        +  +I GL     L +A +V  
Sbjct: 268 LYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVD 327

Query: 562 LMEAQG 567
            M++ G
Sbjct: 328 QMKSDG 333



 Score = 45.1 bits (105), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 66/337 (19%), Positives = 126/337 (37%), Gaps = 3/337 (0%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           E+ +T  R Y  +I+++ +   L  +     +M +NG VP       L+     + + ++
Sbjct: 88  ETSKTKFRLYEVIINSYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQ 147

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
               F   +S     D   +  +I     AG+ +    L+  +   G   +  IY  L+ 
Sbjct: 148 WWSFFNENKSK-VVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLID 206

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
              + G++  A  +   M          + T+L+    + G   Q    ++ M   G  P
Sbjct: 207 GCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFP 266

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           +      ++    K      A  +  E+ + G      TY  L+  L R   +NEA +++
Sbjct: 267 NLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVV 326

Query: 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAG 550
            ++   G  P      +L D +   G   KAL     L+++        +  +++G    
Sbjct: 327 DQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRK 386

Query: 551 GFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQ 587
           G    A ++   ME +G   S+     LI   TF R 
Sbjct: 387 GDTSGAAKMVKEMEERGIKPSKVTYTILI--DTFARS 421


>gi|147838532|emb|CAN65388.1| hypothetical protein VITISV_038361 [Vitis vinifera]
          Length = 676

 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 119/273 (43%), Gaps = 6/273 (2%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F   V   + L++   K N  +    + ++M   GI P++ T  +L H+  K G+  +  
Sbjct: 264 FVPTVITSNYLLNGLLKLNYTDRCWEVYEEMERFGIAPNLYTFNILTHVLCKDGDTGKVN 323

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           +  E +   GF PD   YN++I +Y   G+      L  +M   G+      Y AL+   
Sbjct: 324 KFLEKMEEEGFDPDIVTYNTLINSYCRKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNGL 383

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + G VR A Q+ + M      P + +   L+  Y + G   ++RS    MI  G  PD 
Sbjct: 384 CKEGRVREAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPDS 443

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
                ++  YGK+     ALNL++EL++ G       Y+ L+  L R      A+ LL +
Sbjct: 444 FTCWVLVEGYGKEGKFLSALNLVVELQRFGVSISQDIYSYLIVALCRENRPFAAKNLLER 503

Query: 493 ISELGEAPPFKIQVSL------CDMYARAGIEK 519
           +S+ G     +I   L      CD  A A + K
Sbjct: 504 MSQDGHKXELEIYNELIKSFCQCDCIAEALLLK 536



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 104/225 (46%), Gaps = 6/225 (2%)

Query: 231 RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVP 290
           R+RE + QL+ ++    LS +     +  Y+ LI  + KE  ++++  +L  M  NGI P
Sbjct: 388 RVREAH-QLFHRMVHRGLSPD-----IVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISP 441

Query: 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV 350
           D  T  VLV  Y K G    A      L+  G    + +Y+ +I+A     +P    +L+
Sbjct: 442 DSFTCWVLVEGYGKEGKFLSALNLVVELQRFGVSISQDIYSYLIVALCRENRPFAAKNLL 501

Query: 351 DMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410
           + M   G +   EIY  L++SF QC  +  A  +   M  +E +P L +   ++    + 
Sbjct: 502 ERMSQDGHKXELEIYNELIKSFCQCDCIAEALLLKMEMVDKEIKPNLATYRAVJGCLSRL 561

Query: 411 GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
               +  S    M+  G  PD     ++   Y ++N +DKA +LL
Sbjct: 562 SRSMEGESLVGEMVASGXLPDLEICRALFYGYCRENDIDKAESLL 606



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/309 (22%), Positives = 125/309 (40%), Gaps = 35/309 (11%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L++   KE  + +A ++  +M   G+ PDIVT   L+H Y K G +  ++     + 
Sbjct: 376 YTALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMI 435

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
            +G  PD      ++  Y   G+    ++LV  +   G+  S++IY              
Sbjct: 436 WNGISPDSFTCWVLVEGYGKEGKFLSALNLVVELQRFGVSISQDIY-------------- 481

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
                                + L+ A  +   P  A++  + M + GHK +      +I
Sbjct: 482 ---------------------SYLIVALCRENRPFAAKNLLERMSQDGHKXELEIYNELI 520

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            ++ + + + +AL L +E+     +P  ATY  ++  L RL    E E L+G++   G  
Sbjct: 521 KSFCQCDCIAEALLLKMEMVDKEIKPNLATYRAVJGCLSRLSRSMEGESLVGEMVASGXL 580

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P  +I  +L   Y R     KA   L F   + +    + F  +I    A G +  +  +
Sbjct: 581 PDLEICRALFYGYCRENDIDKAESLLSFXAKEFQIHDTESFNALIRITSAKGDIARSLEI 640

Query: 560 HGLMEAQGF 568
             +M   G 
Sbjct: 641 QDMMLKMGL 649



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/303 (20%), Positives = 109/303 (35%), Gaps = 35/303 (11%)

Query: 245 ELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK 304
            L+L  E    +   +  L+ A+ +   + +  R  ++M   G VP ++TS  L++   K
Sbjct: 221 NLILCTEDCNWDPVVFDMLVKAYLRMGRVREGLRSFRRMLRVGFVPTVITSNYLLNGLLK 280

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
               DR  E +E +   G  P+   +N  I+ +V                          
Sbjct: 281 LNYTDRCWEVYEEMERFGIAPNLYTFN--ILTHV-------------------------- 312

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
                    + GD     +    M  E F P + +   L+ +Y + G  D A   +  M 
Sbjct: 313 -------LCKDGDTGKVNKFLEKMEEEGFDPDIVTYNTLINSYCRKGRLDDAFYLYKIMY 365

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
           R G  PD     +++    K+  + +A  L   +   G  P   TY  L+    +   + 
Sbjct: 366 RRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQ 425

Query: 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERII 544
           E+  LL  +   G +P       L + Y + G    AL  +  L+     +  D +  +I
Sbjct: 426 ESRSLLHDMIWNGISPDSFTCWVLVEGYGKEGKFLSALNLVVELQRFGVSISQDIYSYLI 485

Query: 545 NGL 547
             L
Sbjct: 486 VAL 488


>gi|222626074|gb|EEE60206.1| hypothetical protein OsJ_13175 [Oryza sativa Japonica Group]
          Length = 789

 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 129/302 (42%), Gaps = 4/302 (1%)

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           + +E +L+ M E G++PD  +   +V  ++ AGNL R  E F  + + G  PD   Y  +
Sbjct: 69  DQSEMLLRTMLEAGVLPDTASYRHIVDAFAGAGNLSRVAELFAEMSATGHTPDPSAYLGL 128

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           + A+   G     ++++  M   G   +   Y  LL  + + G   G  ++   MR    
Sbjct: 129 MEAHTLVGATAEAVAVLRQMQADGCPPTAATYRVLLDLYGRQGRFDGVRELFREMRT-TV 187

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD-DRCTASMIAAYGKKNLLDKAL 452
            P   +  +L   +G  G   +    F  M+    +PD D C   M+A  G+  L + A 
Sbjct: 188 PPDTATYNVLFRVFGDGGFFKEVVELFQDMLHSEVEPDIDTCENVMVAC-GRGGLHEDAR 246

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
            +L  +  +G  P    YT LV+ LG   +  EA      ++E+G  P  +   +L + +
Sbjct: 247 EVLDYITTEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANAF 306

Query: 513 ARAGIEKKALQALGFLEAKKE-QMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAAS 571
           A+ G+ ++A      +      Q   D F+ +I     G  L DA + +  M    F   
Sbjct: 307 AKGGLFQEAEAIFSRMTNNAAIQKDKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPD 366

Query: 572 ER 573
           ER
Sbjct: 367 ER 368



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 83/189 (43%), Gaps = 1/189 (0%)

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           EDA  +L  +   G+VP     T LV     A   + A  AF  +   G  P  + YN++
Sbjct: 243 EDAREVLDYITTEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNAL 302

Query: 334 IMAYVNAGQPKLGMSLVDMMIT-SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
             A+   G  +   ++   M   + I++ ++ + AL+ ++ Q   +  A +    MR   
Sbjct: 303 ANAFAKGGLFQEAEAIFSRMTNNAAIQKDKDSFDALIEAYCQGAQLDDAVKAYMEMRKSR 362

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
           F P   S   ++ AY  AG  D+++  F+ +  +   P       M++ Y + +    A 
Sbjct: 363 FNPDERSLEGVLNAYCIAGVIDESKEQFEELQSMVTVPSIIAYCMMLSLYARNDRWTDAY 422

Query: 453 NLLLELEKD 461
           +LL E++ +
Sbjct: 423 DLLEEMKTN 431



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 99/235 (42%), Gaps = 7/235 (2%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L          ++   + + M  + + PDI T   ++    + G  + A+E  + + 
Sbjct: 194 YNVLFRVFGDGGFFKEVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDAREVLDYIT 253

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G  P  K Y  ++ A  +A   +      +MM   G   + E Y AL  +FA+ G  +
Sbjct: 254 TEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANAFAKGGLFQ 313

Query: 380 GA----GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
            A     ++TN   I++ + + ++   L+EAY Q    D A   +  M +    PD+R  
Sbjct: 314 EAEAIFSRMTNNAAIQKDKDSFDA---LIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSL 370

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
             ++ AY    ++D++     EL+     P    Y +++    R     +A  LL
Sbjct: 371 EGVLNAYCIAGVIDESKEQFEELQSMVTVPSIIAYCMMLSLYARNDRWTDAYDLL 425



 Score = 39.7 bits (91), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 63/134 (47%), Gaps = 4/134 (2%)

Query: 241 FKVAELVLS----EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTST 296
           F+ AE + S      + Q +   +  LI+A+ +   L+DA +   +M ++   PD  +  
Sbjct: 312 FQEAEAIFSRMTNNAAIQKDKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLE 371

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
            +++ Y  AG +D +KE FE L+S    P    Y  M+  Y    +      L++ M T+
Sbjct: 372 GVLNAYCIAGVIDESKEQFEELQSMVTVPSIIAYCMMLSLYARNDRWTDAYDLLEEMKTN 431

Query: 357 GIERSEEIYLALLR 370
               + ++  ++++
Sbjct: 432 RASSTHQVIASMIK 445


>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 115/235 (48%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           ++  Y+ L++       LEDA ++ + + + GI  ++ +  +L++ Y K   +D A   F
Sbjct: 285 DILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLF 344

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E +R  G +P    YN++I A   +G+ +    L   M T G       Y  LL    + 
Sbjct: 345 EEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKN 404

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A  +   ++  E +P +E  ++L++   +AG  ++A   FD + + G +PD    
Sbjct: 405 GHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAY 464

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
             +I     K +L +A+ LL ++E+ G  P   T+ V++  L +   I+EA QLL
Sbjct: 465 NILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLL 519



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/305 (23%), Positives = 130/305 (42%), Gaps = 4/305 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y  +ID+  K+    +A  +  +M   GI+PD+V  + L+    + G L  A E F
Sbjct: 145 DVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFF 204

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + +   G   D   YNS+I     AG  K     +++M+  G       +  L+    + 
Sbjct: 205 KEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKE 264

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G V  A QI  +M  +  +P + +   L+      G  + A   F+ +   G K +    
Sbjct: 265 GKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSY 324

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +I  Y K   +D+A  L  E+   G +P   TY  L+  L +   +  A++L  ++  
Sbjct: 325 NILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQT 384

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFL 553
            G+         L D   + G  ++A+    F   KK +  P+   F  +++G+   G L
Sbjct: 385 CGQFLKLSTYCVLLDGLCKNGHLEEAIDL--FQSIKKTEHKPNIEVFSILLDGMCRAGKL 442

Query: 554 QDAQR 558
           ++A +
Sbjct: 443 EEAWK 447



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 64/274 (23%), Positives = 98/274 (35%), Gaps = 38/274 (13%)

Query: 287 GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLG 346
           G  PD VT T LV        +  A + F+ +   G   D K Y  +I     A +  L 
Sbjct: 72  GFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKTGLA 131

Query: 347 MSLVDMMITSGIERSEEIYLALLRSFAQC-GDVRGAGQITNIMRIEEFQPTLESCTLLVE 405
           + L + M                     C GDV   G I                   ++
Sbjct: 132 IKLHEKMK------------------GNCKGDVFTYGMI-------------------ID 154

Query: 406 AYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
           +  + G   +A   F  MI  G  PD    +S++    +   L +AL    E+E  G   
Sbjct: 155 SLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISA 214

Query: 466 GPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
              TY  L+  L R  L  E    L  + + G +P       L D   + G   +A Q L
Sbjct: 215 DVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQIL 274

Query: 526 GFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
             +  K ++     +  ++NGL   G L+DA ++
Sbjct: 275 ELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKL 308



 Score = 46.2 bits (108), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 53/105 (50%), Gaps = 2/105 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +S+   + +   Y+ LI+    +  L +A ++L +M E G +PD +T  V++    K   
Sbjct: 452 ISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENE 511

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDM 352
           +  A +  E +R+  F PD+ V  SM++   +   P+   +LV +
Sbjct: 512 IHEAIQLLEEMRNRNFSPDEAV-TSMLLCLASF-DPQWHAALVSL 554


>gi|148907853|gb|ABR17050.1| unknown [Picea sitchensis]
 gi|224284228|gb|ACN39850.1| unknown [Picea sitchensis]
          Length = 420

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 137/316 (43%), Gaps = 2/316 (0%)

Query: 255 TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA 314
           T+V  YS+ I+   K+  + +A  I ++M E G  PD  T  +L++   K   L+     
Sbjct: 89  TDVISYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSL 148

Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
            + +++ GF P    Y ++I  +  AG+    M ++D M   GI  +   Y AL++    
Sbjct: 149 MDEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCD 208

Query: 375 CGDVRGAGQITNIMRI--EEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
           CG+V  A  +   M++   E  P + + T L+    Q G  +      D MI  G  P++
Sbjct: 209 CGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNN 268

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               ++I    +K    +A  LL E+   G E     Y  L+D L ++  ++ A ++   
Sbjct: 269 ATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAREMQIL 328

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
           + E G AP      SL      AG+  +AL  +  + AK        +  +ING      
Sbjct: 329 MVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTTLINGFTQADR 388

Query: 553 LQDAQRVHGLMEAQGF 568
              A ++   M++ G 
Sbjct: 389 TDHALQLVNEMKSNGL 404



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 106/250 (42%), Gaps = 2/250 (0%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F   V  Y+ LI        ++ A  IL +M   GI P+ VT T L+      G ++RA 
Sbjct: 157 FSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDCGEVERAI 216

Query: 313 EAFESLRSHGFQ--PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
              + ++  G +  P+   Y  +I      G  ++GM  +D MI SG   +   Y AL+ 
Sbjct: 217 LVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNATYTALIH 276

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
              Q G    A  + N M     +  +     L++   + G+ D AR     M+  G  P
Sbjct: 277 GLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAREMQILMVEKGVAP 336

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           D     S+I       LLD+AL L+ E+   G  P   TYT L++   +    + A QL+
Sbjct: 337 DVFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTTLINGFTQADRTDHALQLV 396

Query: 491 GKISELGEAP 500
            ++   G  P
Sbjct: 397 NEMKSNGLMP 406



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 122/297 (41%), Gaps = 6/297 (2%)

Query: 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV 350
           D+++ +  ++   K G +  A E F  +   G  PD   YN +I       Q ++G+SL+
Sbjct: 90  DVISYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLM 149

Query: 351 DMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410
           D M   G   +   Y  L+  F   G V  A  I + M      P   + T L++     
Sbjct: 150 DEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDC 209

Query: 411 GDPDQARSNFDYMIRLGHK--PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPA 468
           G+ ++A      M   G++  P+      +I    +K L +  +  L E+   G  P  A
Sbjct: 210 GEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNA 269

Query: 469 TYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFL 528
           TYT L+  L +     EA  LL ++  +G      I  SL D   + G E    + +  L
Sbjct: 270 TYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMG-ELDFAREMQIL 328

Query: 529 EAKKEQMGPDDF--ERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQT 583
             +K  + PD F    +I GL   G L +A  +   M A+G   +      LI+  T
Sbjct: 329 MVEK-GVAPDVFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTTLINGFT 384



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 96/224 (42%), Gaps = 2/224 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENG--IVPDIVTSTVLVHMYSKAGNLDRAKE 313
           N   Y+ LI        +E A  +LK+M   G    P++VT T L+H   + G  +   E
Sbjct: 195 NTVTYTALIQGLCDCGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGME 254

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
             + +   G  P+   Y ++I      G       L++ M+  G E    IY +L+    
Sbjct: 255 FLDEMIISGCFPNNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLC 314

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           + G++  A ++  +M  +   P + + T L++    AG  D+A      M   G  P+  
Sbjct: 315 KMGELDFAREMQILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPNSV 374

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
              ++I  + + +  D AL L+ E++ +G  P    Y +L   L
Sbjct: 375 TYTTLINGFTQADRTDHALQLVNEMKSNGLMPAGDIYKILFKSL 418



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 57/108 (52%)

Query: 223 IDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKK 282
           + + +L+D L +     + +  ++++ E+    +V  Y+ LI        L++A  ++++
Sbjct: 304 VIYNSLIDGLCKMGELDFAREMQILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQE 363

Query: 283 MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVY 330
           M   GIVP+ VT T L++ +++A   D A +    ++S+G  P   +Y
Sbjct: 364 MRAKGIVPNSVTYTTLINGFTQADRTDHALQLVNEMKSNGLMPAGDIY 411


>gi|356551209|ref|XP_003543970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 687

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 127/284 (44%), Gaps = 10/284 (3%)

Query: 227 NLLDRLREQNTQLYFKV-------AELVLSE---ESFQTNVRDYSKLIDAHAKENCLEDA 276
           NL+  L   NT +Y          A L+ +E    S   +V  Y+ LID   +   L+ A
Sbjct: 337 NLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRSLAPSVVTYNTLIDGLCRLGDLDVA 396

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
            R+  +M ++G  PD+ T T  V  + K GNL  AKE F+ + + G QPD+  Y + I+ 
Sbjct: 397 MRLKDEMIKHGPDPDVFTFTTFVRGFCKMGNLPMAKELFDEMLNRGLQPDRFAYITRIVG 456

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
            +  G P     + + M+  G       Y   +    + G+++ A ++   M      P 
Sbjct: 457 ELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPD 516

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
             + T ++ A+  AG   +AR+ F  M+  G  P       +I +Y  +  L  A+    
Sbjct: 517 HVTYTSIIHAHLMAGHLRKARALFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFF 576

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
           E+ + G  P   TY  L++ L +++ +++A     ++   G +P
Sbjct: 577 EMHEKGVHPNVITYNALINGLCKVRKMDQAYNFFAEMQAKGISP 620



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 82/363 (22%), Positives = 145/363 (39%), Gaps = 35/363 (9%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
            + +V  Y  LI  + ++  +E+A R+ ++M   G VP +VT   +++   K G +  A+
Sbjct: 268 LEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTYNTIMYGLCKWGRVSDAR 327

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           +  + + +    PD   YN++I  Y   G       L   +    +  S   Y  L+   
Sbjct: 328 KLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRSLAPSVVTYNTLIDGL 387

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + GD+  A ++ + M      P + + T  V  + + G+   A+  FD M+  G +PD 
Sbjct: 388 CRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFVRGFCKMGNLPMAKELFDEMLNRGLQPDR 447

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               + I    K     KA  +  E+   GF P   TY V +D L +L  + EA +L+ K
Sbjct: 448 FAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKK 507

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKA------------------------------- 521
           +   G  P      S+   +  AG  +KA                               
Sbjct: 508 MLYNGLVPDHVTYTSIIHAHLMAGHLRKARALFLEMLSKGIFPSVVTYTVLIHSYAVRGR 567

Query: 522 --LQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVA 577
             L  L F E  ++ + P+   +  +INGL     +  A      M+A+G + ++     
Sbjct: 568 LKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYNFFAEMQAKGISPNKYTYTI 627

Query: 578 LIS 580
           LI+
Sbjct: 628 LIN 630



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/351 (22%), Positives = 149/351 (42%), Gaps = 18/351 (5%)

Query: 225 WINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDA-HAKENCLEDAERILKKM 283
           WI +   L E+   +++K+       +    +V++ ++++     ++N ++ A  +   M
Sbjct: 139 WIYVKKSLLEKCLLVFYKMVS-----KGLLPDVKNCNRVLRLLRDRDNNIDVAREVYNVM 193

Query: 284 NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343
            E GI P +VT   ++  + K G +  A +    +++ G  P+   YN ++    ++G+ 
Sbjct: 194 VECGICPTVVTYNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDVTYNVLVNGLSHSGEM 253

Query: 344 KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403
           +    L+  M+  G+E S   Y  L+R + + G +  A ++   M      PT+ +   +
Sbjct: 254 EQAKELIQDMLRLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTYNTI 313

Query: 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGF 463
           +    + G    AR   D M+     PD     ++I  Y +   + +A  L  EL     
Sbjct: 314 MYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRSL 373

Query: 464 EPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
            P   TY  L+D L RL  ++ A +L  ++ + G  P      +    + + G    A +
Sbjct: 374 APSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFVRGFCKMGNLPMAKE 433

Query: 524 ALGFLEAKKEQMGPDDF---ERIINGLLAGGFLQDAQRVHGLME---AQGF 568
              F E     + PD F    RI+  L  G    D  +  G+ E   A+GF
Sbjct: 434 L--FDEMLNRGLQPDRFAYITRIVGELKLG----DPSKAFGMQEEMLARGF 478



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 112/247 (45%), Gaps = 12/247 (4%)

Query: 218 LQPSRIDWIN-LLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           LQP R  +I  ++  L+  +    F + E +L+   F  ++  Y+  ID   K   L++A
Sbjct: 443 LQPDRFAYITRIVGELKLGDPSKAFGMQEEMLAR-GFPPDLITYNVFIDGLHKLGNLKEA 501

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
             ++KKM  NG+VPD VT T ++H +  AG+L +A+  F  + S G  P    Y  +I +
Sbjct: 502 SELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARALFLEMLSKGIFPSVVTYTVLIHS 561

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNI---MRIEEF 393
           Y   G+ KL +     M   G+  +   Y AL+    +   VR   Q  N    M+ +  
Sbjct: 562 YAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCK---VRKMDQAYNFFAEMQAKGI 618

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
            P   + T+L+      G   +A   +  M+    +PD  CT   +  +  K   D  L+
Sbjct: 619 SPNKYTYTILINENCNLGHWQEALRLYKDMLDREIQPDS-CTHRSLLKHLNK---DYKLH 674

Query: 454 LLLELEK 460
           ++  LE 
Sbjct: 675 VVRHLEN 681


>gi|449467169|ref|XP_004151297.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Cucumis sativus]
 gi|449518833|ref|XP_004166440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Cucumis sativus]
          Length = 609

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/379 (22%), Positives = 160/379 (42%), Gaps = 47/379 (12%)

Query: 221 SRIDWINLL-DRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERI 279
           SR   +N+L +R + Q  Q  F      L E+  +     Y+ L+ A  ++   +    +
Sbjct: 59  SRTKLMNILVERGKPQEAQFIFNS----LVEQGHRPTTVTYTALVAALTRQKRFKAISGL 114

Query: 280 LKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339
           L +M E GI PD +    +++ +S++GN+  A E F+ +   G +P    +N++I  Y  
Sbjct: 115 LSEMEETGIKPDSILLNAIINAFSESGNVKEAMEIFQKMEESGCKPTTSTFNTLIKGYGI 174

Query: 340 AGQPKLGMSLVDM------------------------------------MITSGIERSEE 363
             +P+  M L+++                                    M+ SG++    
Sbjct: 175 IRKPEESMKLLELMTRTTNLKPNNRTYNILVGALCKKKSIKEAWNVVHQMLASGVQPDVV 234

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
            Y  L R++AQ G+   A  I   M  ++  P   +C ++V  Y + G+  +A      M
Sbjct: 235 TYNTLARAYAQDGETNKAESIIVDMLNKKVNPNERTCGIIVGGYCEQGNLAEALRVVYRM 294

Query: 424 IRLGHKPDDRCTASMIAAY---GKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
             LG  P+     S+I  +   G  + +DKAL +   +E+ G +P   T++ +++     
Sbjct: 295 RDLGIHPNLVIFNSLIKGFLDIGDSDGVDKALTM---MEESGVKPDVITFSTIMNGWSSA 351

Query: 481 QLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF 540
             +++ +++   + + G  P   +   L   + RAG   KA   L F+     +     F
Sbjct: 352 GRMDKCQEIFDDMLKSGIEPDIHVFSILAKGFVRAGEPVKAESLLNFMSKYGVRPNVVIF 411

Query: 541 ERIINGLLAGGFLQDAQRV 559
             II+G    G ++ A +V
Sbjct: 412 TTIISGWCTAGKMEKAWKV 430



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/289 (21%), Positives = 131/289 (45%)

Query: 241 FKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
            K+ EL+    + + N R Y+ L+ A  K+  +++A  ++ +M  +G+ PD+VT   L  
Sbjct: 182 MKLLELMTRTTNLKPNNRTYNILVGALCKKKSIKEAWNVVHQMLASGVQPDVVTYNTLAR 241

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
            Y++ G  ++A+     + +    P+++    ++  Y   G     + +V  M   GI  
Sbjct: 242 AYAQDGETNKAESIIVDMLNKKVNPNERTCGIIVGGYCEQGNLAEALRVVYRMRDLGIHP 301

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
           +  I+ +L++ F   GD  G  +   +M     +P + + + ++  +  AG  D+ +  F
Sbjct: 302 NLVIFNSLIKGFLDIGDSDGVDKALTMMEESGVKPDVITFSTIMNGWSSAGRMDKCQEIF 361

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
           D M++ G +PD    + +   + +     KA +LL  + K G  P    +T ++      
Sbjct: 362 DDMLKSGIEPDIHVFSILAKGFVRAGEPVKAESLLNFMSKYGVRPNVVIFTTIISGWCTA 421

Query: 481 QLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLE 529
             + +A ++   + ++  +P  K   +L   Y  A    +A + L  +E
Sbjct: 422 GKMEKAWKVFEHMCDMDVSPNLKTFETLIWGYGEAKQPWRAEEILQMME 470



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/247 (21%), Positives = 113/247 (45%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           Q +V  Y+ L  A+A++     AE I+  M    + P+  T  ++V  Y + GNL  A  
Sbjct: 230 QPDVVTYNTLARAYAQDGETNKAESIIVDMLNKKVNPNERTCGIIVGGYCEQGNLAEALR 289

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
               +R  G  P+  ++NS+I  +++ G        + MM  SG++     +  ++  ++
Sbjct: 290 VVYRMRDLGIHPNLVIFNSLIKGFLDIGDSDGVDKALTMMEESGVKPDVITFSTIMNGWS 349

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
             G +    +I + M     +P +   ++L + + +AG+P +A S  ++M + G +P+  
Sbjct: 350 SAGRMDKCQEIFDDMLKSGIEPDIHVFSILAKGFVRAGEPVKAESLLNFMSKYGVRPNVV 409

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
              ++I+ +     ++KA  +   +      P   T+  L+   G  +    AE++L  +
Sbjct: 410 IFTTIISGWCTAGKMEKAWKVFEHMCDMDVSPNLKTFETLIWGYGEAKQPWRAEEILQMM 469

Query: 494 SELGEAP 500
            E+   P
Sbjct: 470 EEMNVVP 476



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 82/159 (51%)

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           +  ++ L  M E+G+ PD++T + +++ +S AG +D+ +E F+ +   G +PD  V++ +
Sbjct: 320 DGVDKALTMMEESGVKPDVITFSTIMNGWSSAGRMDKCQEIFDDMLKSGIEPDIHVFSIL 379

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
              +V AG+P    SL++ M   G+  +  I+  ++  +   G +  A ++   M   + 
Sbjct: 380 AKGFVRAGEPVKAESLLNFMSKYGVRPNVVIFTTIISGWCTAGKMEKAWKVFEHMCDMDV 439

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            P L++   L+  YG+A  P +A      M  +   P++
Sbjct: 440 SPNLKTFETLIWGYGEAKQPWRAEEILQMMEEMNVVPEN 478



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 111/232 (47%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N R    ++  + ++  L +A R++ +M + GI P++V    L+  +   G+ D   +A 
Sbjct: 267 NERTCGIIVGGYCEQGNLAEALRVVYRMRDLGIHPNLVIFNSLIKGFLDIGDSDGVDKAL 326

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G +PD   +++++  + +AG+      + D M+ SGIE    ++  L + F + 
Sbjct: 327 TMMEESGVKPDVITFSTIMNGWSSAGRMDKCQEIFDDMLKSGIEPDIHVFSILAKGFVRA 386

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G+   A  + N M     +P +   T ++  +  AG  ++A   F++M  +   P+ +  
Sbjct: 387 GEPVKAESLLNFMSKYGVRPNVVIFTTIISGWCTAGKMEKAWKVFEHMCDMDVSPNLKTF 446

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            ++I  YG+     +A  +L  +E+    P  +T  ++ +    + ++N+A+
Sbjct: 447 ETLIWGYGEAKQPWRAEEILQMMEEMNVVPENSTLKLVSEAWRSIGMVNDAK 498



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 74/348 (21%), Positives = 142/348 (40%), Gaps = 4/348 (1%)

Query: 246 LVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKA 305
           L L   S  T VR  +KL++   +    ++A+ I   + E G  P  VT T LV   ++ 
Sbjct: 47  LCLGNNSCGT-VRSRTKLMNILVERGKPQEAQFIFNSLVEQGHRPTTVTYTALVAALTRQ 105

Query: 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
                       +   G +PD  + N++I A+  +G  K  M +   M  SG + +   +
Sbjct: 106 KRFKAISGLLSEMEETGIKPDSILLNAIINAFSESGNVKEAMEIFQKMEESGCKPTTSTF 165

Query: 366 LALLRSFAQCGDVRGAGQITNIM-RIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
             L++ +        + ++  +M R    +P   +  +LV A  +     +A +    M+
Sbjct: 166 NTLIKGYGIIRKPEESMKLLELMTRTTNLKPNNRTYNILVGALCKKKSIKEAWNVVHQML 225

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
             G +PD     ++  AY +    +KA ++++++      P   T  ++V        + 
Sbjct: 226 ASGVQPDVVTYNTLARAYAQDGETNKAESIIVDMLNKKVNPNERTCGIIVGGYCEQGNLA 285

Query: 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERII 544
           EA +++ ++ +LG  P   I  SL   +   G      +AL  +E    +     F  I+
Sbjct: 286 EALRVVYRMRDLGIHPNLVIFNSLIKGFLDIGDSDGVDKALTMMEESGVKPDVITFSTIM 345

Query: 545 NGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQPTR 592
           NG  + G +   Q +   M   G      + V  I ++ F R  +P +
Sbjct: 346 NGWSSAGRMDKCQEIFDDMLKSGIEPD--IHVFSILAKGFVRAGEPVK 391



 Score = 46.6 bits (109), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 33/174 (18%), Positives = 80/174 (45%), Gaps = 1/174 (0%)

Query: 246 LVLSEES-FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK 304
           L + EES  + +V  +S +++  +    ++  + I   M ++GI PDI   ++L   + +
Sbjct: 326 LTMMEESGVKPDVITFSTIMNGWSSAGRMDKCQEIFDDMLKSGIEPDIHVFSILAKGFVR 385

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
           AG   +A+     +  +G +P+  ++ ++I  +  AG+ +    + + M    +  + + 
Sbjct: 386 AGEPVKAESLLNFMSKYGVRPNVVIFTTIISGWCTAGKMEKAWKVFEHMCDMDVSPNLKT 445

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418
           +  L+  + +      A +I  +M      P   +  L+ EA+   G  + A++
Sbjct: 446 FETLIWGYGEAKQPWRAEEILQMMEEMNVVPENSTLKLVSEAWRSIGMVNDAKA 499


>gi|125582652|gb|EAZ23583.1| hypothetical protein OsJ_07284 [Oryza sativa Japonica Group]
          Length = 667

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 118/248 (47%), Gaps = 4/248 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E  ++ + R Y+ ++D   +E   ++AE +L++M E G+ P +VT T +++ Y K G 
Sbjct: 102 MKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGR 161

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A    E ++  G +P+   YN+++  + N G+    M+L++ M   G+      Y  
Sbjct: 162 MSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNL 221

Query: 368 LLRSFAQC--GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
           L+R   QC  G +  A ++  +M  +       +   L+ A  + G  DQA S FD +  
Sbjct: 222 LIR--GQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLET 279

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
            G KP+     S+I    K    D A   L ++   G  P   TY+  ++ L +++   E
Sbjct: 280 RGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQE 339

Query: 486 AEQLLGKI 493
               +G++
Sbjct: 340 GLSFIGEM 347



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/340 (20%), Positives = 148/340 (43%), Gaps = 19/340 (5%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI     +  +E A R+L+ M  +G++ D  T   L++   K G  D+A   F+SL 
Sbjct: 219 YNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLE 278

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC-GDV 378
           + G +P+   +NS+I     +G+  +    ++ M+++G       Y + +    +  G  
Sbjct: 279 TRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQ 338

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
            G   I  +++ ++ +P+  + T+++    +  +       +  M+  G  PD     + 
Sbjct: 339 EGLSFIGEMLQ-KDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTS 397

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           + AY  +  L++A N+L+E+ K+G       Y  L+D    +   + A  +L +++ +  
Sbjct: 398 MRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVAS 457

Query: 499 APP----FKIQVSLCDM--------YARAGIEK--KALQALGFLEA-KKEQMGPDD--FE 541
            P     F +   L  M           AG+ K  +     G  +  KK +  P+   + 
Sbjct: 458 VPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYS 517

Query: 542 RIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
            I+ G    G  ++A  +  LM+    + +E +  AL++ 
Sbjct: 518 SILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTC 557



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 122/282 (43%), Gaps = 9/282 (3%)

Query: 198 ILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLD-RLREQNTQLYFKVAELVLSE---ES 252
           + + E+ E+   +L   KEL  +PS   +  ++D R RE+      K AE +L E   + 
Sbjct: 86  LCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKA----KEAEEMLQEMFEKG 141

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
               V   + +I+A+ KE  + DA R+L+ M   G  P++ T   LV  +   G + +A 
Sbjct: 142 LAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAM 201

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
                +R+ G  PD   YN +I      G  +    L+ +M   G+   +  Y AL+ + 
Sbjct: 202 TLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINAL 261

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + G    A  + + +     +P   +   L+    ++G  D A    + M+  G  PD 
Sbjct: 262 CKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDT 321

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
              +S I    K     + L+ + E+ +   +P    YT+++
Sbjct: 322 YTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVI 363



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 122/292 (41%), Gaps = 4/292 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++ LI  + + N ++ A  +  KM   G   D+V+   L+    +AG +D A E F  + 
Sbjct: 13  FNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAVELFGEMD 72

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
               QPD  +Y +++    NA + + G+ ++  M   G   S   Y A++    +    +
Sbjct: 73  ----QPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKAK 128

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++   M  +   P + +CT ++ AY + G    A    + M   G KP+     +++
Sbjct: 129 EAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALV 188

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             +  +  + KA+ LL ++   G  P   TY +L+        I  A +LL  +   G  
Sbjct: 189 QGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLI 248

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGG 551
                  +L +   + G   +A      LE +  +     F  +INGL   G
Sbjct: 249 ADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSG 300



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 79/321 (24%), Positives = 130/321 (40%), Gaps = 25/321 (7%)

Query: 176 GEMILPEEPKPITGKCKLITDKILSLEKEEDPSPLLAEWKELLQP-SRIDWINLLDRLRE 234
           GEM L ++ KP T    ++  K+L   KE +   +   W E++      D +     +R 
Sbjct: 345 GEM-LQKDVKPSTVNYTIVIHKLL---KERNYGLVARTWGEMVSSGCNPDVVTYTTSMRA 400

Query: 235 QNTQLYFKVAELVLSEES---FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPD 291
              +     AE VL E S      +   Y+ L+D HA     + A  ILK+M     VP+
Sbjct: 401 YCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPN 460

Query: 292 IVTSTVLV-HMYS----------------KAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
             T  +L+ H+                  KA  L      F+ ++ + F P+   Y+S++
Sbjct: 461 QFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSIL 520

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
             +   G+ +   SLV +M    I  +E+IY AL+  F +      A  +   M    F 
Sbjct: 521 EGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFI 580

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P L S   L+      G  D+A+  F       + PD+     +I    KK   D +  +
Sbjct: 581 PQLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSDISREM 640

Query: 455 LLELEKDGFEPGPATYTVLVD 475
           ++ LE+    P   TY +L +
Sbjct: 641 IIMLERMNCRPSHQTYAMLTE 661



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/260 (22%), Positives = 106/260 (40%), Gaps = 4/260 (1%)

Query: 322 GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGA 381
           G++PD   +NS+I+ Y    Q  +   L D M   G  +    Y  L+    + G +  A
Sbjct: 5   GWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEA 64

Query: 382 GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441
            ++   M     QP +     LV+    A   ++       M  LG +P  R  A+++  
Sbjct: 65  VELFGEMD----QPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDF 120

Query: 442 YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
             ++    +A  +L E+ + G  P   T T +++   +   +++A ++L  +   G  P 
Sbjct: 121 RCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPN 180

Query: 502 FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHG 561
                +L   +   G   KA+  L  + A         +  +I G    G ++ A R+  
Sbjct: 181 VWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLR 240

Query: 562 LMEAQGFAASERLKVALISS 581
           LME  G  A +    ALI++
Sbjct: 241 LMEGDGLIADQYTYNALINA 260



 Score = 40.0 bits (92), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 65/354 (18%), Positives = 135/354 (38%), Gaps = 23/354 (6%)

Query: 218 LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           ++P+ + + +L++ L +     + +K  E ++S      +   YS  I+   K    ++ 
Sbjct: 282 IKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSA-GCTPDTYTYSSFIEHLCKMKGSQEG 340

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
              + +M +  + P  V  T+++H   K  N       +  + S G  PD   Y + + A
Sbjct: 341 LSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRA 400

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           Y   G+     +++  M  +G+      Y  L+   A  G    A  I   M      P 
Sbjct: 401 YCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPN 460

Query: 397 LESCTLLVE-----------------AYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
             +  +L+                     +A +       FD M +    P+    +S++
Sbjct: 461 QFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSIL 520

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             + +    ++A +L+  +++D        YT LV    + +   +A  L+  + + G  
Sbjct: 521 EGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFI 580

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGG 551
           P       L       G   KA +   F+ ++ +   PD+  ++ II+GL+  G
Sbjct: 581 PQLMSYQHLLSGLICEGQTDKAKEI--FMNSRWKDYSPDEIVWKVIIDGLIKKG 632


>gi|302819136|ref|XP_002991239.1| hypothetical protein SELMODRAFT_448344 [Selaginella moellendorffii]
 gi|300140950|gb|EFJ07667.1| hypothetical protein SELMODRAFT_448344 [Selaginella moellendorffii]
          Length = 561

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 107/224 (47%)

Query: 268 AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK 327
           A +   +DAE + +K+    + PD+ + T LV+ Y+KA   + A  AF+ + + G +P +
Sbjct: 305 ACQKTWKDAEDVFRKLQAAKLDPDVFSYTALVNAYAKARRAECAHAAFDDMIAAGIRPTQ 364

Query: 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNI 387
             YN++I AY     P+   +++  M  +G   + E Y +L+ ++     +  A Q    
Sbjct: 365 VAYNALINAYAKCKDPEGARAVLKQMKQNGCTPTVESYTSLISAYVSVNLMAKAEQTVLR 424

Query: 388 MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447
           M+  + QP L++  +L+  Y      D    +F+ M   G +P+      ++ AYG  + 
Sbjct: 425 MKEADLQPNLQTFCVLMTGYANGNKLDNMMRSFETMKLAGLEPNRHVYTVLVNAYGSNDD 484

Query: 448 LDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
            D A+    ++   G++P P   TVL+      +   E  +LLG
Sbjct: 485 FDSAIIWYKQMLGTGYKPDPILRTVLLKIAKSHEQTEEIHELLG 528



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 159/352 (45%), Gaps = 36/352 (10%)

Query: 198 ILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLRE-QNTQLYFKVAELVLSEESFQTN 256
           +L +EK  +P  +L ++      SR   +  L R ++ Q  ++  K  E ++ +  +  N
Sbjct: 94  MLEVEKSPEPLAILKKYAGDGNISRESVVGTLTRFKQMQAWKIIIKFTEWLMEQGWYNFN 153

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
            +DY  ++ A+ K+  ++  E I ++M E G+V +I   T+ +  Y +  + D+A+  F+
Sbjct: 154 QKDYFLVLLAYCKDGQVDKTEGIFQRMAELGVVANIEMYTLQIEGYGRRRSFDKAEAVFQ 213

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQ------------------PKLGMSLVDMMI-TSG 357
            L + G  P  + Y +M+ +Y  AG+                   K    + ++MI T G
Sbjct: 214 RLLTTGPSPTAQTYQTMMKSYSEAGRLDDVQRIFKLVTDSPSPTVKPDARMYNLMIHTYG 273

Query: 358 ----IERSEEIYLALLR-----------SFAQCGDV-RGAGQITNIMRIEEFQPTLESCT 401
               +E++  +Y ++ R           S   C    + A  +   ++  +  P + S T
Sbjct: 274 KQGKVEQAMSVYQSMKRERVALTIVTFNSLLACQKTWKDAEDVFRKLQAAKLDPDVFSYT 333

Query: 402 LLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD 461
            LV AY +A   + A + FD MI  G +P      ++I AY K    + A  +L +++++
Sbjct: 334 ALVNAYAKARRAECAHAAFDDMIAAGIRPTQVAYNALINAYAKCKDPEGARAVLKQMKQN 393

Query: 462 GFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
           G  P   +YT L+     + L+ +AEQ + ++ E    P  +    L   YA
Sbjct: 394 GCTPTVESYTSLISAYVSVNLMAKAEQTVLRMKEADLQPNLQTFCVLMTGYA 445



 Score = 42.4 bits (98), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 4/133 (3%)

Query: 198 ILSLEKEEDPSPLLAEWKELLQ----PSRIDWINLLDRLREQNTQLYFKVAELVLSEESF 253
           I +  K +DP    A  K++ Q    P+   + +L+      N     +   L + E   
Sbjct: 371 INAYAKCKDPEGARAVLKQMKQNGCTPTVESYTSLISAYVSVNLMAKAEQTVLRMKEADL 430

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           Q N++ +  L+  +A  N L++  R  + M   G+ P+    TVLV+ Y    + D A  
Sbjct: 431 QPNLQTFCVLMTGYANGNKLDNMMRSFETMKLAGLEPNRHVYTVLVNAYGSNDDFDSAII 490

Query: 314 AFESLRSHGFQPD 326
            ++ +   G++PD
Sbjct: 491 WYKQMLGTGYKPD 503


>gi|297826581|ref|XP_002881173.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327012|gb|EFH57432.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 917

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 128/270 (47%), Gaps = 10/270 (3%)

Query: 215 KELLQPSRIDWINLL-----DRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAK 269
           +  +QP RI + +LL       L E    L+ +     +S    + +V  Y+ L+DA  K
Sbjct: 332 RNCVQPDRITFNSLLAVCSRGGLWEAARNLFDE-----MSNRRIEQDVFSYNTLLDAICK 386

Query: 270 ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKV 329
              ++ A  IL +M    I+P++V+ + ++  ++KAG  D A   F  +R      D+  
Sbjct: 387 GGQMDLAFEILAQMPAKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLNIALDRVS 446

Query: 330 YNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389
           YN+++  Y   G+ +  + ++  M + GI++    Y ALL  + + G      ++   M+
Sbjct: 447 YNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFAEMK 506

Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD 449
            E   P L + + L++ Y + G   +A   F      G + D    +++I A  K  L+ 
Sbjct: 507 REHVLPNLLTYSTLIDGYSKGGLYKEAMEVFREFKSAGLRADVVLYSALIDALCKNGLVG 566

Query: 450 KALNLLLELEKDGFEPGPATYTVLVDWLGR 479
            A++L+ E+ K+G  P   TY  ++D  GR
Sbjct: 567 SAVSLIDEMTKEGISPNVVTYNSIIDAFGR 596



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 144/320 (45%), Gaps = 5/320 (1%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG-NLDRA 311
           +   V  +S LI A+ +    E+A  +   M E G+ P++VT   ++    K G    + 
Sbjct: 264 YGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQV 323

Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
            + F+ ++ +  QPD+  +NS++      G  +   +L D M    IE+    Y  LL +
Sbjct: 324 AKFFDEMQRNCVQPDRITFNSLLAVCSRGGLWEAARNLFDEMSNRRIEQDVFSYNTLLDA 383

Query: 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
             + G +  A +I   M  +   P + S + +++ + +AG  D+A + F  M  L    D
Sbjct: 384 ICKGGQMDLAFEILAQMPAKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLNIALD 443

Query: 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
                ++++ Y K    ++AL++L E+   G +    TY  L+   G+    +E +++  
Sbjct: 444 RVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFA 503

Query: 492 KISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLA 549
           ++      P      +L D Y++ G+ K+A++   F E K   +  D   +  +I+ L  
Sbjct: 504 EMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEV--FREFKSAGLRADVVLYSALIDALCK 561

Query: 550 GGFLQDAQRVHGLMEAQGFA 569
            G +  A  +   M  +G +
Sbjct: 562 NGLVGSAVSLIDEMTKEGIS 581



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 66/131 (50%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ L+  + K+   ++ +++  +M    ++P+++T + L+  YSK G    A E F
Sbjct: 478 DVVTYNALLGGYGKQGKYDEVKKVFAEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEVF 537

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
              +S G + D  +Y+++I A    G     +SL+D M   GI  +   Y +++ +F + 
Sbjct: 538 REFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRS 597

Query: 376 GDVRGAGQITN 386
             +  +   +N
Sbjct: 598 ATMERSADYSN 608



 Score = 45.4 bits (106), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 85/199 (42%), Gaps = 3/199 (1%)

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           A++ +  + G V  A +I        +  T+ + + L+ AYG++G  ++A S F+ M   
Sbjct: 238 AMISTLGRYGKVTIAKRIFETAFSGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEY 297

Query: 427 GHKPDDRCTASMIAAYGKKNL-LDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
           G +P+     ++I A GK  +   +      E++++  +P   T+  L+    R  L   
Sbjct: 298 GLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNCVQPDRITFNSLLAVCSRGGLWEA 357

Query: 486 AEQLLGKISELG-EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERII 544
           A  L  ++S    E   F    +L D   + G    A + L  + AK+       +  +I
Sbjct: 358 ARNLFDEMSNRRIEQDVFSYN-TLLDAICKGGQMDLAFEILAQMPAKRIMPNVVSYSTVI 416

Query: 545 NGLLAGGFLQDAQRVHGLM 563
           +G    G   +A  + G M
Sbjct: 417 DGFAKAGRFDEALNLFGEM 435



 Score = 41.2 bits (95), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 35/168 (20%), Positives = 72/168 (42%), Gaps = 9/168 (5%)

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD--RCTASMIAAYGKKNLLDKALNLL 455
           + CT ++   G  G+ D+A   +++ ++   + ++  +  ++MI+  G+   +  A  + 
Sbjct: 197 DDCTYIIRELGNRGECDKAVGFYEFAVKRERRKNEQGKLASAMISTLGRYGKVTIAKRIF 256

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
                 G+      ++ L+   GR  L  EA  +   + E G  P      ++ D   + 
Sbjct: 257 ETAFSGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKG 316

Query: 516 GIEKKALQALGFLEAKKEQMGPDDFERIINGLLA----GGFLQDAQRV 559
           G+E K +    F E ++  + PD      N LLA    GG  + A+ +
Sbjct: 317 GMEFKQVAKF-FDEMQRNCVQPDRI--TFNSLLAVCSRGGLWEAARNL 361


>gi|357502217|ref|XP_003621397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496412|gb|AES77615.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 550

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 143/319 (44%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F  +   Y  LI+   K      A ++LKK+    +  D+V   ++++   K   +  A 
Sbjct: 160 FHLDQVSYRTLINGLCKIGETRAALQMLKKIEGKLVNTDVVMYNIIINSLCKDKAVSDAY 219

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           + +  + +    PD   +NS+I+ +   GQ K    L   M+   I      +  L+ + 
Sbjct: 220 QLYSEMITKRISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILVDAL 279

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + G++  A  +  +M  +   P + + + L++ Y    + ++A+  F  M RLG  P  
Sbjct: 280 CKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHA 339

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
                MI   GK  ++D+AL+L  E+   G  P   TY  L+D L +L  I+ A QL+ +
Sbjct: 340 HSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDE 399

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
           +   G         SL D+  +     KA+  +  ++ +  Q     +  +I+GL  GG 
Sbjct: 400 MHNNGIPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGR 459

Query: 553 LQDAQRVHGLMEAQGFAAS 571
           L++AQ V   +  +G++ +
Sbjct: 460 LKNAQDVFQDLLIKGYSVN 478



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 128/314 (40%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
            T+V  Y+ +I++  K+  + DA ++  +M    I PD+VT   L+  +   G L  A  
Sbjct: 196 NTDVVMYNIIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQLKEAFG 255

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            F  +      PD   ++ ++ A    G      +++ +M+  G+      Y +L+  + 
Sbjct: 256 LFHEMVLKNINPDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYC 315

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
              +V  A  + + M      P   S  +++   G+    D+A S F  M   G  PD  
Sbjct: 316 LVNEVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTV 375

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
              S+I    K   +  A  L+ E+  +G      TY  L+D L +   I++A  L+ KI
Sbjct: 376 TYNSLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKAIALVKKI 435

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFL 553
            + G  P       L D   + G  K A      L  K   +    +  +INGL   G  
Sbjct: 436 KDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMINGLCKEGLF 495

Query: 554 QDAQRVHGLMEAQG 567
            +A+ +   ME  G
Sbjct: 496 NEAEVLLSKMENNG 509



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 115/259 (44%), Gaps = 8/259 (3%)

Query: 245 ELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK 304
           E+VL  ++   +V  +S L+DA  K+  +  A+ +L  M + G++PD+VT + L+  Y  
Sbjct: 259 EMVL--KNINPDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCL 316

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKL---GMSLVDMMITSGIERS 361
              +++AK  F ++   G  P    YN MI      G+ K+    +SL   M   GI   
Sbjct: 317 VNEVNKAKHVFSTMSRLGVAPHAHSYNIMING---LGKIKMVDEALSLFKEMCCKGIAPD 373

Query: 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421
              Y +L+    + G +  A Q+ + M        + +   L++   +    D+A +   
Sbjct: 374 TVTYNSLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKAIALVK 433

Query: 422 YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ 481
            +   G +P       +I    K   L  A ++  +L   G+     TY ++++ L +  
Sbjct: 434 KIKDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMINGLCKEG 493

Query: 482 LINEAEQLLGKISELGEAP 500
           L NEAE LL K+   G  P
Sbjct: 494 LFNEAEVLLSKMENNGIIP 512



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 109/244 (44%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           V+ ++    +V  YS L+D +   N +  A+ +   M+  G+ P   +  ++++   K  
Sbjct: 294 VMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKIK 353

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            +D A   F+ +   G  PD   YNS+I      G+      LVD M  +GI      Y 
Sbjct: 354 MVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYN 413

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           +L+    +   +  A  +   ++ +  QP++ +  +L++   + G    A+  F  ++  
Sbjct: 414 SLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIK 473

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G+  +      MI    K+ L ++A  LL ++E +G  P   TY  ++  L R     +A
Sbjct: 474 GYSVNAWTYNIMINGLCKEGLFNEAEVLLSKMENNGIIPDAVTYETIIRALFRKDENEKA 533

Query: 487 EQLL 490
           E+LL
Sbjct: 534 EKLL 537



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/340 (21%), Positives = 128/340 (37%), Gaps = 39/340 (11%)

Query: 268 AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK 327
           A  N    A  +  ++   GI P IVT  +LV+ Y   G +  A   F  +   G+ P  
Sbjct: 70  ANNNHYTTAISLSHQLELKGITPTIVTFNILVNCYCHLGEMTFAFSIFAKILKLGYHPTT 129

Query: 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGA------ 381
             +N++I      G+ K  +   D +I  G    +  Y  L+    + G+ R A      
Sbjct: 130 ITFNTLINGICLNGKLKEALHFHDHVIALGFHLDQVSYRTLINGLCKIGETRAALQMLKK 189

Query: 382 --GQITNI---------------------------MRIEEFQPTLESCTLLVEAYGQAGD 412
             G++ N                            M  +   P + +   L+  +   G 
Sbjct: 190 IEGKLVNTDVVMYNIIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQ 249

Query: 413 PDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTV 472
             +A   F  M+     PD    + ++ A  K   + +A N+L  + K G  P   TY+ 
Sbjct: 250 LKEAFGLFHEMVLKNINPDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSS 309

Query: 473 LVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKK 532
           L+D    +  +N+A+ +   +S LG AP       + +   +  +  +AL    F E   
Sbjct: 310 LMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSL--FKEMCC 367

Query: 533 EQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAA 570
           + + PD   +  +I+GL   G +  A ++   M   G  A
Sbjct: 368 KGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGIPA 407



 Score = 42.7 bits (99), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 8/86 (9%)

Query: 218 LQPSRIDWINLLDRL----REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCL 273
           +QPS   +  L+D L    R +N Q  F+  +L++  + +  N   Y+ +I+   KE   
Sbjct: 440 IQPSMYTYNILIDGLCKGGRLKNAQDVFQ--DLLI--KGYSVNAWTYNIMINGLCKEGLF 495

Query: 274 EDAERILKKMNENGIVPDIVTSTVLV 299
            +AE +L KM  NGI+PD VT   ++
Sbjct: 496 NEAEVLLSKMENNGIIPDAVTYETII 521


>gi|242083798|ref|XP_002442324.1| hypothetical protein SORBIDRAFT_08g018230 [Sorghum bicolor]
 gi|241943017|gb|EES16162.1| hypothetical protein SORBIDRAFT_08g018230 [Sorghum bicolor]
          Length = 647

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 138/309 (44%), Gaps = 5/309 (1%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG-NLD 309
           + +   V  +S LI A+A+     +A  +L+ M   G+ P  V+   ++    K G +L 
Sbjct: 17  DRYGNTVFAHSALISAYARSGLATEAMGVLESMKGAGLRPTTVSYNAVIDACGKGGVDLR 76

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
                F  +   G  PD+K +NS++ A   AG  +   ++ D MI  G  R    Y   +
Sbjct: 77  FTLGYFRQMLQDGLCPDRKTFNSLLAACSRAGHLEDARTVFDEMIHLGSGRDIYTYNTFV 136

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
            +  +CG++  A Q+   M     +P + + + L++ + +    D+A    + M  LG +
Sbjct: 137 DAICKCGNMELATQVVLDMEANNIKPNVVTYSTLMDGFSKLEKYDEALKLREKMKSLGIQ 196

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
            D  C  +++A Y K    D+   +  ++E  G E    TY  L++  G+   ++    L
Sbjct: 197 LDRVCYNTLLAIYVKTGKYDEIATVCEDMENLGIEKDTVTYNSLINGYGKQGRLDMVAFL 256

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGL 547
           +  +   G AP      +L D+Y++AG+   A     +L+ K+  +  D   F   I+ L
Sbjct: 257 VQDMRAQGVAPSVLTYSTLIDIYSKAGMHGDAFNV--YLDFKESGLKADVVLFSSFIDTL 314

Query: 548 LAGGFLQDA 556
              G ++ A
Sbjct: 315 AKNGLVECA 323



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 115/230 (50%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           ++  Y+  +DA  K   +E A +++  M  N I P++VT + L+  +SK    D A +  
Sbjct: 128 DIYTYNTFVDAICKCGNMELATQVVLDMEANNIKPNVVTYSTLMDGFSKLEKYDEALKLR 187

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E ++S G Q D+  YN+++  YV  G+     ++ + M   GIE+    Y +L+  + + 
Sbjct: 188 EKMKSLGIQLDRVCYNTLLAIYVKTGKYDEIATVCEDMENLGIEKDTVTYNSLINGYGKQ 247

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +     +   MR +   P++ + + L++ Y +AG    A + +      G K D    
Sbjct: 248 GRLDMVAFLVQDMRAQGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKADVVLF 307

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
           +S I    K  L++ AL+LL E+ K G +P   TY  ++D  G+ +++ E
Sbjct: 308 SSFIDTLAKNGLVECALSLLDEMIKMGIKPNVVTYNTIIDAFGKSKILTE 357


>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
 gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 747

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 85/372 (22%), Positives = 155/372 (41%), Gaps = 50/372 (13%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI  + KE     A  +  +M  +G+ P ++T T L+H   KAGN++RA E  + +R
Sbjct: 313 YNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMR 372

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P+++ Y +++  +   G       ++  M  +G   S   Y AL+      G + 
Sbjct: 373 VRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKME 432

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA----------------------- 416
            A  +   M+ +   P + S + ++  + ++ D D+A                       
Sbjct: 433 DAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLI 492

Query: 417 -------RSN-----FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
                  R+      ++ M+R+G  PD+    ++I AY  +  L+KAL L  E+ + G  
Sbjct: 493 QGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVL 552

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP---------------FKIQVSLC 509
           P   TY+VL++ L +     EA++LL K+      P                FK  VSL 
Sbjct: 553 PDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLI 612

Query: 510 DMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
             +   G+  +A Q    +  K  +     +  +I+G    G ++ A  ++  M   GF 
Sbjct: 613 KGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFL 672

Query: 570 ASERLKVALISS 581
                 +AL+ +
Sbjct: 673 LHTVTVIALVKA 684



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 155/342 (45%), Gaps = 11/342 (3%)

Query: 253 FQTNVRDYSKLIDA--HAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           F   V  Y+ ++DA   +K N +  AE + K+M E+ + P++ T  +L+  +  AGN+D 
Sbjct: 165 FMPGVLSYNAVLDATIRSKRN-ISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDV 223

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A   F+ + + G  P+   YN++I  Y    +   G  L+  M   G+E +   Y  ++ 
Sbjct: 224 ALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVIN 283

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
              + G ++    +   M    +     +   L++ Y + G+  QA      M+R G  P
Sbjct: 284 GLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTP 343

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
                 S+I +  K   +++A+  L ++   G  P   TYT LVD   +   +NEA ++L
Sbjct: 344 SVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVL 403

Query: 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ-MGPD--DFERIINGL 547
            ++++ G +P      +L + +   G   K   A+  LE  KE+ + PD   +  +++G 
Sbjct: 404 REMNDNGFSPSVVTYNALINGHCVTG---KMEDAIAVLEDMKEKGLSPDVVSYSTVLSGF 460

Query: 548 LAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQ 589
                + +A RV   M  +G         +LI  Q F  QR+
Sbjct: 461 CRSYDVDEALRVKREMVEKGIKPDTITYSSLI--QGFCEQRR 500



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 138/306 (45%), Gaps = 4/306 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  Y+ +I+   +E  +++   +L +MN  G   D VT   L+  Y K GN  +A    
Sbjct: 274 NLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMH 333

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +  HG  P    Y S+I +   AG     M  +D M   G+  +E  Y  L+  F+Q 
Sbjct: 334 AEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQK 393

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A ++   M    F P++ +   L+  +   G  + A +  + M   G  PD    
Sbjct: 394 GYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSY 453

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
           +++++ + +   +D+AL +  E+ + G +P   TY+ L+      +   EA  L  ++  
Sbjct: 454 STVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLR 513

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFL 553
           +G  P      +L + Y   G  +KALQ     E  ++ + PD   +  +INGL      
Sbjct: 514 VGLPPDEFTYTALINAYCMEGDLEKALQLHN--EMVEKGVLPDVVTYSVLINGLNKQSRT 571

Query: 554 QDAQRV 559
           ++A+R+
Sbjct: 572 REAKRL 577



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 120/279 (43%), Gaps = 18/279 (6%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E+    +V  YS ++    +   +++A R+ ++M E GI PD +T + L+  + +   
Sbjct: 441 MKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRR 500

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
              A + +E +   G  PD+  Y ++I AY   G  +  + L + M+  G+      Y  
Sbjct: 501 TKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSV 560

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPT-------LESCT--------LLVEAYGQAGD 412
           L+    +    R A ++   +  EE  P+       +E+C+         L++ +   G 
Sbjct: 561 LINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGM 620

Query: 413 PDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTV 472
             +A   F+ M+   HKPD      MI  + +   + KA  L  E+ K GF     T   
Sbjct: 621 MTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIA 680

Query: 473 LVDWLGRLQLINEAEQLLGKI---SELGEAPPFKIQVSL 508
           LV  L +   +NE   ++  +    EL EA   K+ V +
Sbjct: 681 LVKALHKEGKVNELNSVIVHVLRSCELSEAEQAKVLVEI 719



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 70/339 (20%), Positives = 131/339 (38%), Gaps = 48/339 (14%)

Query: 274 EDAERILKKMNENGIVPDIVTST-----VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKK 328
           E A  + K + E     D+  ST     ++V  YS+   +D+A       ++HGF P   
Sbjct: 114 EYASLVFKSLQET---YDLCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVL 170

Query: 329 VYNS------------------------------------MIMAYVNAGQPKLGMSLVDM 352
            YN+                                    +I  +  AG   + ++L D 
Sbjct: 171 SYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDK 230

Query: 353 MITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGD 412
           M T G   +   Y  L+  + +   +    ++   M ++  +P L S  +++    + G 
Sbjct: 231 METKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGR 290

Query: 413 PDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTV 472
             +       M R G+  D+    ++I  Y K+    +AL +  E+ + G  P   TYT 
Sbjct: 291 MKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTS 350

Query: 473 LVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKK 532
           L+  + +   +N A + L ++   G  P  +   +L D +++ G   +A + L   E   
Sbjct: 351 LIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLR--EMND 408

Query: 533 EQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
               P    +  +ING    G ++DA  V   M+ +G +
Sbjct: 409 NGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLS 447


>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
 gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
          Length = 855

 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 96/392 (24%), Positives = 174/392 (44%), Gaps = 42/392 (10%)

Query: 220 PSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAER 278
           P+R  +  ++D L + Q      KV E ++ +      +  Y+ LID  +K + +++A +
Sbjct: 431 PTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTIT-YTTLIDGFSKASKMDEARK 489

Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338
           +L  M   G  P  VT   +VH + K   ++ AKE    +R  G +P   ++ S++  Y+
Sbjct: 490 LLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYL 549

Query: 339 NAGQPK-------------------LGMSLVDMMITSG------------IERSEE---- 363
           + G+ +                   L  SL+D++ ++G            IE+       
Sbjct: 550 SKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDAL 609

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
            Y  ++++F++ G+V  AG+I  +M      P   +   L++ Y +    DQA   +D M
Sbjct: 610 TYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRM 669

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE-LEKDGFEPGPATYTVLVDWLGRLQL 482
           +  G KP+      ++    K    D+A +L  E LEKD   P   +YT+L+D LG+   
Sbjct: 670 VASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGR 729

Query: 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DF 540
           ++EA     ++ + G  P      SL    A+AG   +A + +   +  K  + PD   +
Sbjct: 730 VSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVE--DMVKLGVNPDVQAY 787

Query: 541 ERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572
             +I GL+    +  A  V   M  +G A +E
Sbjct: 788 SALITGLIDSSMVDTAWDVFQEMMKRGCAPNE 819



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 139/337 (41%), Gaps = 60/337 (17%)

Query: 197 KILSLEKEEDPSPLLAEWKELLQP-SRIDWIN----LLDRLREQNTQ----LYFKVAELV 247
           K+L +   + P P    +  ++    ++D IN    ++ ++RE+  +    ++  +    
Sbjct: 489 KLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYY 548

Query: 248 LS----EESFQT-----------NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDI 292
           LS    EE++Q            +V  Y+ LID       + +A  +   M E G  PD 
Sbjct: 549 LSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDA 608

Query: 293 VTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDM 352
           +T   ++  +SK GN++ A E  E +   G  PD   YNS++  YV   +      + D 
Sbjct: 609 LTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDR 668

Query: 353 MITSGIERSEEIYLALLRSFAQCGDV-RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAG 411
           M+ SGI+ +   +  L+    + G   R       ++  +E  PTL S T+L++  G+AG
Sbjct: 669 MVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAG 728

Query: 412 DPDQARSNFDYMI-----------------------------------RLGHKPDDRCTA 436
              +A S F  MI                                   +LG  PD +  +
Sbjct: 729 RVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYS 788

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVL 473
           ++I      +++D A ++  E+ K G  P   TY VL
Sbjct: 789 ALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVL 825



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 115/251 (45%), Gaps = 2/251 (0%)

Query: 242 KVAELVLSE--ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLV 299
           +V  ++L++  + F+ +V  Y+ +I  + K   L+   +IL++M   G +PD     VL+
Sbjct: 107 QVGHMLLNQALKRFRPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLI 166

Query: 300 HMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
               K G +D A E FE +R  G   D   + ++I A  N G+      L   MI  G E
Sbjct: 167 DPLCKLGRVDEAYELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYE 226

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
              E+  +L+ +  + G V  A +I   +  ++   +  +   L++ Y + G  D     
Sbjct: 227 PYLEVQDSLIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKL 286

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
              M+   + PD +    ++A + + N LD AL L   L   G +P  ATYT ++  L  
Sbjct: 287 LLQMVECDNFPDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYD 346

Query: 480 LQLINEAEQLL 490
            Q + EA+   
Sbjct: 347 AQRMEEAKAFF 357



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 129/287 (44%), Gaps = 1/287 (0%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           +E+A   LK+M+  G++PD+V   ++++   KA  +D+A E F  + S G +P    YN+
Sbjct: 1   MEEALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNT 60

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I    +  +        + MI +G E     +  L+  F + G  +    + N   ++ 
Sbjct: 61  VISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLN-QALKR 119

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
           F+P +   T ++  Y +AGD D      + M+  G  PD      +I    K   +D+A 
Sbjct: 120 FRPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAY 179

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
            L   + K G      T+  L++ L     ++EA +L  ++ E G  P  ++Q SL    
Sbjct: 180 ELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFAL 239

Query: 513 ARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
            +AG   +A +    + AKK       +  +++G    G + D  ++
Sbjct: 240 CKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKL 286



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 147/332 (44%), Gaps = 9/332 (2%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+D + K   ++D  ++L +M E    PDI T  +LV  +S+A  LD A E F+ L 
Sbjct: 267 YNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTYNILVAGFSRANRLDDALELFKLLS 326

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI-YLALLRSFAQCGDV 378
           S+G +P+   Y ++I    +A + +   +  D       E  + I Y  +++  A    +
Sbjct: 327 SYGCKPNAATYTTIIQGLYDAQRMEEAKAFFD-------EALDVISYTTVIKGLADSKRI 379

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             A ++   ++     P + + T +++   +AG  +    NF+ M      P       +
Sbjct: 380 DEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVV 439

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           I    K  +L  A  +  ++ + G  P   TYT L+D   +   ++EA +LL  +   G 
Sbjct: 440 IDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGP 499

Query: 499 APPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQR 558
            P      S+   + +  +  +A + +  +  +  + G   F  +++  L+ G  ++A +
Sbjct: 500 EPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQ 559

Query: 559 VHGLMEAQGFAASERLKVALISSQTFNRQRQP 590
           V   M A+G A    L  +LI    F+  R P
Sbjct: 560 VLTEMTARGCAPDVILYTSLI-DLLFSTGRVP 590



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 138/330 (41%), Gaps = 14/330 (4%)

Query: 242 KVAELVLSEESF--QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLV 299
           K  EL L   S   +  +  Y+ +I   A  + +++A +    M +NG  PD++  T L+
Sbjct: 38  KAIELFLEMPSMGCEPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLI 97

Query: 300 HMYSKAGNLDRAKEAF-ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
           H + KAG          ++L+   F+PD  +Y S+I  Y  AG    G  +++ M+ +G 
Sbjct: 98  HGFCKAGQPQVGHMLLNQALKR--FRPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGC 155

Query: 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418
                 Y  L+    + G V  A ++   MR         +   L+EA    G  D+A  
Sbjct: 156 IPDAAAYFVLIDPLCKLGRVDEAYELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACE 215

Query: 419 NFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLG 478
            +  MI  G++P      S+I A  K   +D+A  +   +           Y  L+D   
Sbjct: 216 LYREMIERGYEPYLEVQDSLIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYC 275

Query: 479 RLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
           +L  +++  +LL ++ E    P  +    L   ++RA     AL+    L +   +    
Sbjct: 276 KLGRVDDGLKLLLQMVECDNFPDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAA 335

Query: 539 DFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
            +  II G      L DAQR+    EA+ F
Sbjct: 336 TYTTIIQG------LYDAQRME---EAKAF 356



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 77/345 (22%), Positives = 145/345 (42%), Gaps = 68/345 (19%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVP------------------------- 290
           +++ Y+ L+   ++ N L+DA  + K ++  G  P                         
Sbjct: 298 DIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAFF 357

Query: 291 ----DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLG 346
               D+++ T ++   + +  +D A E FE L++ G  P+   Y ++I   + AG+    
Sbjct: 358 DEALDVISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGR---- 413

Query: 347 MSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA 406
                  I  G++  E              D+ G+  +          PT  + T++++ 
Sbjct: 414 -------IEDGLKNFE--------------DMSGSSCV----------PTRTTYTVVIDG 442

Query: 407 YGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG 466
             +A     A   F+ M++ G  PD     ++I  + K + +D+A  LL  +   G EP 
Sbjct: 443 LCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPT 502

Query: 467 PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALG 526
             TY  +V    +L +INEA++++ ++ E G  P   I  SL   Y   G  ++A Q L 
Sbjct: 503 AVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLT 562

Query: 527 FLEAKKEQMGPDD--FERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
            + A+     PD   +  +I+ L + G + +A+ V   M  +G A
Sbjct: 563 EMTARG--CAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCA 605



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/296 (23%), Positives = 123/296 (41%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ +ID   K   +ED  +  + M+ +  VP   T TV++    KA  L  A + F
Sbjct: 397 NVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVF 456

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E +   G  PD   Y ++I  +  A +      L+D+M+T G E +   Y +++  F + 
Sbjct: 457 EQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKL 516

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
             +  A ++   MR    +P L   T L+  Y   G  ++A      M   G  PD    
Sbjct: 517 DMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILY 576

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            S+I        + +A ++   + + G  P   TY  ++    ++  +  A ++L  +++
Sbjct: 577 TSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAK 636

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGG 551
            G  P      SL D Y +     +A      + A   +     F  +++GL   G
Sbjct: 637 SGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDG 692



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 68/317 (21%), Positives = 136/317 (42%), Gaps = 11/317 (3%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V + + +++   K   ++ A  +  +M   G  P IV+   ++   +    +D A + F
Sbjct: 19  DVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVISGLASIDKMDEAYKFF 78

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE---IYLALLRSF 372
            S+  +G +PD   + ++I  +  AGQP++G     M++   ++R      +Y +++  +
Sbjct: 79  NSMIDNGCEPDVIAFTTLIHGFCKAGQPQVG----HMLLNQALKRFRPDVFLYTSVIHGY 134

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + GD+    +I   M      P   +  +L++   + G  D+A   F+ M + G   D 
Sbjct: 135 CKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRKSGCLGDY 194

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               ++I A      LD+A  L  E+ + G+EP       L+  L +   ++EA ++   
Sbjct: 195 VTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALCKAGKVDEANEIYQT 254

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAG 550
           +     A       SL D Y + G     L+ L  L+  +    PD   +  ++ G    
Sbjct: 255 VVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLL--LQMVECDNFPDIQTYNILVAGFSRA 312

Query: 551 GFLQDAQRVHGLMEAQG 567
             L DA  +  L+ + G
Sbjct: 313 NRLDDALELFKLLSSYG 329



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 76/160 (47%), Gaps = 1/160 (0%)

Query: 218 LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           ++P+ + +  L+  L ++  T   F + + +L ++     +  Y+ LID   K   + +A
Sbjct: 674 IKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRVSEA 733

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
               ++M + GI+P+  T T L++  +KAG +  AK+  E +   G  PD + Y+++I  
Sbjct: 734 FSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITG 793

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
            +++        +   M+  G   +E  Y  L R F   G
Sbjct: 794 LIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAG 833


>gi|357449339|ref|XP_003594946.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124359380|gb|ABN05846.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355483994|gb|AES65197.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 849

 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 145/349 (41%), Gaps = 41/349 (11%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ ++    K +  ED  +IL  M  NG  PD +T   ++ +  + G      +  
Sbjct: 447 NVCTYNNVLVLLGKRSRSEDMIKILCDMKLNGCPPDRITWNTMLAVCGEKGKQKFVSQVL 506

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +++ GF+PDK+ +N++I AY   G       +   M+ +G       Y ALL + A+ 
Sbjct: 507 REMKNCGFEPDKETFNTLISAYGRCGSEVDVAKMYGEMVAAGFTPCITTYNALLNALARR 566

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGD-----------------PD---- 414
           G+ + A  +   MR + F+P   S +LL+  Y +AG+                 P     
Sbjct: 567 GNWKAAESVVLDMRKKGFKPNETSYSLLLHCYSKAGNVRGLEKVEMEIYDGHVFPSWMLL 626

Query: 415 --------QARS------NFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
                   + R        F  +   G+K D     SM++ + +   L+KA  +L  +  
Sbjct: 627 RTLVLTNYKCRQLKGMERAFHQLQNNGYKLDMVVINSMLSMFVRNQKLEKAHEMLDVIHV 686

Query: 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKK 520
            G +P   TY  L+D   R+    +AE++L  I   G +P      ++   + + G+ ++
Sbjct: 687 SGLQPNLVTYNSLIDLYARVGDCWKAEEMLKDIQNSGISPDVVSYNTVIKGFCKKGLVQE 746

Query: 521 ALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV------HGLM 563
           A++ L  + A   Q  P  F   ++     G   +A  V      HG M
Sbjct: 747 AIRILSEMTANGVQPCPITFNTFMSCYAGNGLFAEADEVIRYMIEHGCM 795



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 82/376 (21%), Positives = 157/376 (41%), Gaps = 37/376 (9%)

Query: 233 REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDI 292
           RE    +  K+ +++  EE +  +V+  + ++ A+A+    + A  I +KM E G+ P +
Sbjct: 214 RESQYSIASKLFDIIPVEE-YSLDVKACTTVLHAYARTGKYKRAIEIFEKMKETGLDPTL 272

Query: 293 VTSTVLVHMYSKAGN------------------------------------LDRAKEAFE 316
           VT  V++ +Y K G                                     LD A+  F+
Sbjct: 273 VTYNVMLDVYGKMGRAWSMILELLDEMRSKGLEFDEFTCTTVISACGREGILDEARRFFD 332

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
            L+ +G++P    YNSM+  +  AG     ++++  M  +  E     Y  L+ ++ + G
Sbjct: 333 DLKLNGYKPGTATYNSMLQVFGKAGVYTEALNILKEMEDNNCEPDAITYNELVAAYVRAG 392

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
                  + + M  +   P   + T ++ AYG+AGD D+A   F  M  LG  P+     
Sbjct: 393 FHDEGAAVIDTMASKGVMPNAITYTTVINAYGKAGDADKALEVFGQMKELGCVPNVCTYN 452

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
           +++   GK++  +  + +L +++ +G  P   T+  ++   G         Q+L ++   
Sbjct: 453 NVLVLLGKRSRSEDMIKILCDMKLNGCPPDRITWNTMLAVCGEKGKQKFVSQVLREMKNC 512

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDA 556
           G  P  +   +L   Y R G E    +  G + A         +  ++N L   G  + A
Sbjct: 513 GFEPDKETFNTLISAYGRCGSEVDVAKMYGEMVAAGFTPCITTYNALLNALARRGNWKAA 572

Query: 557 QRVHGLMEAQGFAASE 572
           + V   M  +GF  +E
Sbjct: 573 ESVVLDMRKKGFKPNE 588



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 78/353 (22%), Positives = 148/353 (41%), Gaps = 46/353 (13%)

Query: 220 PSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERI 279
           P RI W  +L    E+  Q +       +    F+ +   ++ LI A+ +     D  ++
Sbjct: 481 PDRITWNTMLAVCGEKGKQKFVSQVLREMKNCGFEPDKETFNTLISAYGRCGSEVDVAKM 540

Query: 280 LKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339
             +M   G  P I T   L++  ++ GN   A+     +R  GF+P++  Y+ ++  Y  
Sbjct: 541 YGEMVAAGFTPCITTYNALLNALARRGNWKAAESVVLDMRKKGFKPNETSYSLLLHCYSK 600

Query: 340 AGQPKLGMSLVDMMITSG------------------------IERSEE------------ 363
           AG  + G+  V+M I  G                        +ER+              
Sbjct: 601 AGNVR-GLEKVEMEIYDGHVFPSWMLLRTLVLTNYKCRQLKGMERAFHQLQNNGYKLDMV 659

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
           +  ++L  F +   +  A ++ +++ +   QP L +   L++ Y + GD  +A      +
Sbjct: 660 VINSMLSMFVRNQKLEKAHEMLDVIHVSGLQPNLVTYNSLIDLYARVGDCWKAEEMLKDI 719

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483
              G  PD     ++I  + KK L+ +A+ +L E+  +G +P P T+   +       L 
Sbjct: 720 QNSGISPDVVSYNTVIKGFCKKGLVQEAIRILSEMTANGVQPCPITFNTFMSCYAGNGLF 779

Query: 484 NEAEQLLGKISELGEAP---PFKIQVSLCDMYARAGIEKKALQALGFLEAKKE 533
            EA++++  + E G  P    +KI +   D Y +A   KK  +A+ F+   KE
Sbjct: 780 AEADEVIRYMIEHGCMPNELTYKIVI---DGYIKA---KKHKEAMDFVSKIKE 826



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/215 (21%), Positives = 104/215 (48%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y++L+ A+ +    ++   ++  M   G++P+ +T T +++ Y KAG+ D+A E F  ++
Sbjct: 381 YNELVAAYVRAGFHDEGAAVIDTMASKGVMPNAITYTTVINAYGKAGDADKALEVFGQMK 440

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P+   YN++++      + +  + ++  M  +G       +  +L    + G  +
Sbjct: 441 ELGCVPNVCTYNNVLVLLGKRSRSEDMIKILCDMKLNGCPPDRITWNTMLAVCGEKGKQK 500

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
              Q+   M+   F+P  E+   L+ AYG+ G        +  M+  G  P      +++
Sbjct: 501 FVSQVLREMKNCGFEPDKETFNTLISAYGRCGSEVDVAKMYGEMVAAGFTPCITTYNALL 560

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
            A  ++     A +++L++ K GF+P   +Y++L+
Sbjct: 561 NALARRGNWKAAESVVLDMRKKGFKPNETSYSLLL 595



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/279 (20%), Positives = 120/279 (43%), Gaps = 35/279 (12%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN----- 307
           F   +  Y+ L++A A+    + AE ++  M + G  P+  + ++L+H YSKAGN     
Sbjct: 549 FTPCITTYNALLNALARRGNWKAAESVVLDMRKKGFKPNETSYSLLLHCYSKAGNVRGLE 608

Query: 308 ------------------------------LDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
                                         L   + AF  L+++G++ D  V NSM+  +
Sbjct: 609 KVEMEIYDGHVFPSWMLLRTLVLTNYKCRQLKGMERAFHQLQNNGYKLDMVVINSMLSMF 668

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
           V   + +    ++D++  SG++ +   Y +L+  +A+ GD   A ++   ++     P +
Sbjct: 669 VRNQKLEKAHEMLDVIHVSGLQPNLVTYNSLIDLYARVGDCWKAEEMLKDIQNSGISPDV 728

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
            S   +++ + + G   +A      M   G +P      + ++ Y    L  +A  ++  
Sbjct: 729 VSYNTVIKGFCKKGLVQEAIRILSEMTANGVQPCPITFNTFMSCYAGNGLFAEADEVIRY 788

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
           + + G  P   TY +++D   + +   EA   + KI E+
Sbjct: 789 MIEHGCMPNELTYKIVIDGYIKAKKHKEAMDFVSKIKEI 827


>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
 gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
          Length = 616

 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 152/342 (44%), Gaps = 4/342 (1%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           +L   S   ++  ++ L+D   K   L  A  +L++M    I+PD++T T+LV+   + G
Sbjct: 261 ILKTMSCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVG 320

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            +  A    E +   G+ PD   Y S++     +G+ +    LV  M   G      +Y 
Sbjct: 321 QVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYS 380

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           +L+  + + G+V  A +I   M      P L +  +++    + G   +A S    ++  
Sbjct: 381 SLVSGYCRAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVAR 440

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G+ PD     ++I    K N + +A +L  E+   G  P   T   +V  L R+  +++A
Sbjct: 441 GYVPDVVTYNTLIDGLCKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDA 500

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
             L+ ++S    AP   +  SL D   ++     A   L  +  +   +    + ++I  
Sbjct: 501 WSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACMVLDAMRGQGVALDDFAYRKLIVS 560

Query: 547 LLAGGFLQDAQRVHGLMEAQGF----AASERLKVALISSQTF 584
           +  GG + +A  ++  M A+GF    + S+ L+ A +S+  F
Sbjct: 561 MSHGGRVAEAMAMYDEMVARGFLPDGSTSKTLEEAAMSNSVF 602



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 80/338 (23%), Positives = 144/338 (42%), Gaps = 34/338 (10%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  +  LI  + K      A   L+ ++E  + PD+    VL+H   K GN D+A + F
Sbjct: 61  NLVTFKILIRGNCKAGQAMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLF 120

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI--YLALLRSFA 373
           E++ S   +P+   YN++I     +G  +    L++ MI  G + + +I  Y  L+ +F 
Sbjct: 121 ENMESSRVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFY 180

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           +   +R A      M+     P + +C +LV    + GD ++A    D M   G  PD  
Sbjct: 181 RASRIREACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVI 240

Query: 434 CTASMIAA--------------------------------YGKKNLLDKALNLLLELEKD 461
              S+I A                                + K  +L +AL +L E+ ++
Sbjct: 241 TYNSIIHALCVAGKVVEAAEILKTMSCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRE 300

Query: 462 GFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKA 521
              P   TYT+LV+ L R+  +  A  LL +I   G  P      SL D   ++G  ++A
Sbjct: 301 NILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEA 360

Query: 522 LQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
            + +  +  +  + G   +  +++G    G +  A+ +
Sbjct: 361 HKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREI 398



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 133/314 (42%), Gaps = 9/314 (2%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENG--IVPDIVTSTVLVHMYSKAGNLDRAKEAFES 317
           Y+ +I    K   LE A  +L++M   G    PDIVT   L++ + +A  +  A    E 
Sbjct: 135 YNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREACAFREK 194

Query: 318 LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
           +++ G  PD    N ++      G  +  + ++D M  +G       Y +++ +    G 
Sbjct: 195 MKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGK 254

Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
           V  A +I   M      P L +   L++ + +AG   +A    + M R    PD      
Sbjct: 255 VVEAAEILKTMSC---SPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTI 311

Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           ++    +   +  A  LL E+ + G+ P    YT LVD L +   I EA +L+ ++S  G
Sbjct: 312 LVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRG 371

Query: 498 EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFER--IINGLLAGGFLQD 555
                 +  SL   Y RAG   KA + L   E     M P  F    ++ GL+  G +  
Sbjct: 372 CRTGVVMYSSLVSGYCRAGNVHKAREILA--EMVSINMVPPLFTYNIVLGGLIKDGSISK 429

Query: 556 AQRVHGLMEAQGFA 569
           A  +   + A+G+ 
Sbjct: 430 AVSLISDLVARGYV 443


>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
 gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
          Length = 561

 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 158/355 (44%), Gaps = 15/355 (4%)

Query: 220 PSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAER 278
           P  I +  L+D L +    +  F++ E + +      NV  Y+ +I+   K+  L+ A  
Sbjct: 98  PDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIE 157

Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338
           +L  MNE G  P+++T +VLV    KAG  D+     + +   GFQPD  +YN+++    
Sbjct: 158 LLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLC 217

Query: 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398
            + +    + LV +MI SG   +   Y +L+  F +   V  A ++  +M      P + 
Sbjct: 218 KSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVI 277

Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD------KAL 452
           +   ++    +    D A++    M+     PD    +++I    K   +D       A 
Sbjct: 278 NYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAAC 337

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP---PFKIQV-SL 508
            +L  +++ G  P   TY V+++ L R +   +A  LL ++ +    P    F + + SL
Sbjct: 338 EILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSL 397

Query: 509 CDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLM 563
           C  +        A +  G +  ++ +  P  +  +I+GL  GG +  A RV  LM
Sbjct: 398 CKSHDL----DAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELM 448



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 123/279 (44%), Gaps = 12/279 (4%)

Query: 226 INLLDRLRE--QNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKM 283
           +NLL R  +  Q  QL+         EE    N   Y  LI    K   L+ A  +L +M
Sbjct: 5   LNLLVRAGQHGQAVQLF--------REERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEM 56

Query: 284 NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343
            + GI P +     ++    KAG    A   F+++      PD   +N ++ A V +G+ 
Sbjct: 57  RDRGIPPGVAVHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRV 116

Query: 344 KLGMSLVDMMITSGIERSEEI-YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402
           +    + + M TS       + Y  ++    + G +  A ++ ++M      P + + ++
Sbjct: 117 EEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSV 176

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           LVE   +AG  D+  +    M R G +PD     +++    K   LD+AL L+  + + G
Sbjct: 177 LVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSG 236

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
             P   TY  L++   R + ++ A +L+  +SE G  PP
Sbjct: 237 CYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERG-CPP 274



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/320 (20%), Positives = 139/320 (43%), Gaps = 44/320 (13%)

Query: 220 PSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAER 278
           P+ + + +L++   R +     F++ + V+SE     +V +Y+ +I    ++  L+DA+ 
Sbjct: 239 PTVVTYNSLMELFCRSKQVDRAFRLIQ-VMSERGCPPDVINYNTVIAGLCRDARLDDAQA 297

Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR------AKEAFESLRSHGFQPDKKVYNS 332
           +LK+M     VPD++T + ++    K   +D       A E  E ++  G  P+   Y  
Sbjct: 298 LLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAV 357

Query: 333 MIMAYVNAGQPKLGMSLVDMMITS--------------GIERSEEI-------------- 364
           +I     A + +  ++L+  MI S               + +S ++              
Sbjct: 358 VIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERE 417

Query: 365 -------YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
                  Y AL+   ++ G+V  A ++  +M +E F+P + +   +++     G  ++A 
Sbjct: 418 CKPNPVAYAALIDGLSKGGEVDKAVRVFELM-VESFRPGVATYNSVLDGLCGVGRIEEAV 476

Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
              + MI     PD     ++I    + + +++A  L   +E  GF      Y VLV+ L
Sbjct: 477 RMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNEL 536

Query: 478 GRLQLINEAEQLLGKISELG 497
            + + +++A  +  K+ E G
Sbjct: 537 CKKKRLSDAHGVANKLIEAG 556



 Score = 43.9 bits (102), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 58/117 (49%), Gaps = 3/117 (2%)

Query: 219 QPSRIDWINLLDRLREQN-TQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           +P+ + +  L+D L +        +V EL++  ESF+  V  Y+ ++D       +E+A 
Sbjct: 419 KPNPVAYAALIDGLSKGGEVDKAVRVFELMV--ESFRPGVATYNSVLDGLCGVGRIEEAV 476

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           R+++ M      PD  +   L+    +   ++ A E F+++ + GF  +  VYN ++
Sbjct: 477 RMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLV 533


>gi|225430190|ref|XP_002282419.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial [Vitis vinifera]
 gi|296081989|emb|CBI20994.3| unnamed protein product [Vitis vinifera]
          Length = 597

 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 115/237 (48%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           + S+  ++R Y+ L++   +   L+ AE++ + M    + P +VT   LV  Y +    +
Sbjct: 244 DPSWVPSIRVYNVLLNGWFRSRKLKRAEQLWRTMKRENVKPTVVTYGTLVEGYCRMRRSE 303

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
           +A E    +R  G +P+  VYN +I +   AG+ K  M +++  + S    +   Y +L+
Sbjct: 304 KAIELVGEMRGKGIEPNVIVYNPIIDSLAEAGRFKEAMGMMERCLVSETGPTISTYNSLV 363

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
           + F + GD+ GA ++  +M    F PTL +       + + G  ++  + +  MI  GH 
Sbjct: 364 KGFCKAGDLVGASKVLKMMISRGFDPTLTTYNYFFRYFSRCGKTEEGMNLYTKMIESGHT 423

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           PD      +I    ++  LD A+ +  E+   G +   AT T+LV  L ++  + EA
Sbjct: 424 PDRLTYHLLIKMMCEEERLDLAVQVSKEMRARGCDLDLATSTMLVHLLCKMHRLEEA 480



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 110/245 (44%), Gaps = 10/245 (4%)

Query: 215 KELLQPSRIDWINLLD---RLREQNTQLYFKVAELV--LSEESFQTNVRDYSKLIDAHAK 269
           +E ++P+ + +  L++   R+R        K  ELV  +  +  + NV  Y+ +ID+ A+
Sbjct: 279 RENVKPTVVTYGTLVEGYCRMRRSE-----KAIELVGEMRGKGIEPNVIVYNPIIDSLAE 333

Query: 270 ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKV 329
               ++A  ++++   +   P I T   LV  + KAG+L  A +  + + S GF P    
Sbjct: 334 AGRFKEAMGMMERCLVSETGPTISTYNSLVKGFCKAGDLVGASKVLKMMISRGFDPTLTT 393

Query: 330 YNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389
           YN     +   G+ + GM+L   MI SG       Y  L++   +   +  A Q++  MR
Sbjct: 394 YNYFFRYFSRCGKTEEGMNLYTKMIESGHTPDRLTYHLLIKMMCEEERLDLAVQVSKEMR 453

Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD 449
                  L + T+LV    +    ++A + F+ MIR G  P       M  A  K+ L +
Sbjct: 454 ARGCDLDLATSTMLVHLLCKMHRLEEAFAEFEDMIRRGIVPQYLTFERMNNALRKRGLTE 513

Query: 450 KALNL 454
            A  L
Sbjct: 514 MARKL 518



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 6/141 (4%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  LI    +E  L+ A ++ K+M   G   D+ TST+LVH+  K   L+ A   FE + 
Sbjct: 429 YHLLIKMMCEEERLDLAVQVSKEMRARGCDLDLATSTMLVHLLCKMHRLEEAFAEFEDMI 488

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P    +  M  A    G  ++   L DMM  + +  S +    L  +++  GD  
Sbjct: 489 RRGIVPQYLTFERMNNALRKRGLTEMARKLCDMM--ASVPHSSK----LPNTYSGDGDAS 542

Query: 380 GAGQITNIMRIEEFQPTLESC 400
            A + + I R E     L++C
Sbjct: 543 RARKTSIIQRAEAMSDILKTC 563



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 132/319 (41%), Gaps = 44/319 (13%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL-----RSHGFQPDK 327
           LEDA      +N  GI P    S +L  ++S   + D + +   +L     +  GF+   
Sbjct: 90  LEDA------LNRTGIKP---CSGLLQAIFS---HFDASPKPLFTLFRWAMKQPGFESSM 137

Query: 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER---SEEIYLALLRSFAQCGDVRGAGQI 384
            ++NSMI     +        LV   I  G E    S   +  L+R +A+      AG  
Sbjct: 138 TLFNSMIDVLAKSRAFDSAWLLVLDRIEGGEEPELVSSNTFAVLIRRYAR------AGMT 191

Query: 385 TNIMRIEEFQPTLESC----------TLLVEAYGQAGDPDQARSNFDYMIRLGHK--PDD 432
            + +R  EF  +L+S            +L+++  + G    A   FD    L     P  
Sbjct: 192 LSAIRTFEFAFSLDSIRDRDSEWSLFKILLDSLCKEGHVRVASEYFDQQRGLDPSWVPSI 251

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
           R    ++  + +   L +A  L   ++++  +P   TY  LV+   R++   +A +L+G+
Sbjct: 252 RVYNVLLNGWFRSRKLKRAEQLWRTMKRENVKPTVVTYGTLVEGYCRMRRSEKAIELVGE 311

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLE-AKKEQMGP--DDFERIINGLLA 549
           +   G  P   +   + D  A AG  K   +A+G +E     + GP    +  ++ G   
Sbjct: 312 MRGKGIEPNVIVYNPIIDSLAEAGRFK---EAMGMMERCLVSETGPTISTYNSLVKGFCK 368

Query: 550 GGFLQDAQRVHGLMEAQGF 568
            G L  A +V  +M ++GF
Sbjct: 369 AGDLVGASKVLKMMISRGF 387



 Score = 45.8 bits (107), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 62/304 (20%), Positives = 114/304 (37%), Gaps = 44/304 (14%)

Query: 241 FKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTST---V 297
           F +    + +  F++++  ++ +ID  AK    + A  ++    E G  P++V+S    V
Sbjct: 121 FTLFRWAMKQPGFESSMTLFNSMIDVLAKSRAFDSAWLLVLDRIEGGEEPELVSSNTFAV 180

Query: 298 LVHMYSKAGNLDRAKEAFESLRSHGFQPDK----KVYNSMIMAYVNAGQPKLGMSLVDMM 353
           L+  Y++AG    A   FE   S     D+     ++  ++ +    G  ++     D  
Sbjct: 181 LIRRYARAGMTLSAIRTFEFAFSLDSIRDRDSEWSLFKILLDSLCKEGHVRVASEYFDQQ 240

Query: 354 --ITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAY---- 407
             +      S  +Y  LL  + +   ++ A Q+   M+ E  +PT+ +   LVE Y    
Sbjct: 241 RGLDPSWVPSIRVYNVLLNGWFRSRKLKRAEQLWRTMKRENVKPTVVTYGTLVEGYCRMR 300

Query: 408 -------------GQAGDPDQARSN--FDYMIRLGHKPD-----DRCTA----------- 436
                        G+  +P+    N   D +   G   +     +RC             
Sbjct: 301 RSEKAIELVGEMRGKGIEPNVIVYNPIIDSLAEAGRFKEAMGMMERCLVSETGPTISTYN 360

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
           S++  + K   L  A  +L  +   GF+P   TY     +  R     E   L  K+ E 
Sbjct: 361 SLVKGFCKAGDLVGASKVLKMMISRGFDPTLTTYNYFFRYFSRCGKTEEGMNLYTKMIES 420

Query: 497 GEAP 500
           G  P
Sbjct: 421 GHTP 424


>gi|410109911|gb|AFV61035.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           alba]
          Length = 413

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 123/268 (45%), Gaps = 8/268 (2%)

Query: 211 LAEWKELLQPSRIDWINLLD---RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAH 267
           + +W   L+PS + +  L++   RL + +     K A L       Q +V  YS LI+  
Sbjct: 150 ITKWG--LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLA---SGVQPDVYTYSVLINGL 204

Query: 268 AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK 327
            KE+ ++DA  +  +M   G+VP+ VT T L+  + K G +D A E ++ + S    PD 
Sbjct: 205 CKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDL 264

Query: 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNI 387
             YN++I      G       L+D M   G++  +  Y  L+    + GD+  A +    
Sbjct: 265 ITYNTLIYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKR 324

Query: 388 MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447
           M  E  +    + T ++    Q G P  A      M+ +G KPD      +I  + KK  
Sbjct: 325 MIQENIRLDDVAYTAIISGLCQEGRPVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGD 384

Query: 448 LDKALNLLLELEKDGFEPGPATYTVLVD 475
           + K   LL E++++G  P   TY VL++
Sbjct: 385 VWKGSKLLKEMQRNGHVPSVXTYNVLMN 412



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/313 (20%), Positives = 144/313 (46%), Gaps = 5/313 (1%)

Query: 191 CKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELV--- 247
           C+ + + ++ L   +       E  E   P+ + + N+L     ++  +  +VA+ V   
Sbjct: 92  CRKVLEHLMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDI--RVAQSVFDA 149

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +++   + +V  Y+ L++ + +   L++  R+   M  +G+ PD+ T +VL++   K   
Sbjct: 150 ITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESK 209

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D A E F+ +   G  P+   + ++I  +   G+  L M +   M++  +      Y  
Sbjct: 210 MDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNT 269

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    + GD+  A  + + M ++  +P   + T L++   + GD D A  +   MI+  
Sbjct: 270 LIYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQEN 329

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            + DD    ++I+   ++     A  +L E+   G +P   TYT++++   +   + +  
Sbjct: 330 IRLDDVAYTAIISGLCQEGRPVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGS 389

Query: 488 QLLGKISELGEAP 500
           +LL ++   G  P
Sbjct: 390 KLLKEMQRNGHVP 402



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/267 (20%), Positives = 111/267 (41%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E  +  ++  ++ L+    K+  +  A+ +   + + G+ P +V+   L++ Y + G+LD
Sbjct: 117 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 176

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
                  ++ + G QPD   Y+ +I       +      L D M+  G+  +   +  L+
Sbjct: 177 EGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLI 236

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               + G V  A +I   M  +   P L +   L+    + GD +QA    D M   G K
Sbjct: 237 DGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHGLIDEMSMKGLK 296

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     ++I    K+  LD A      + ++        YT ++  L +     +AE++
Sbjct: 297 PDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTAIISGLCQEGRPVDAEKM 356

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAG 516
           L ++  +G  P       + + + + G
Sbjct: 357 LREMLSVGLKPDTGTYTMIINEFCKKG 383


>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 774

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 124/274 (45%), Gaps = 6/274 (2%)

Query: 220 PSRIDWINLLDRLREQNTQLYFKVAELVLSEES---FQTNVRDYSKLIDAHAKENCLEDA 276
           P+ I +  LLD   ++N     + A  VL+E S   F+ N+  Y+ L+ A  K   +  A
Sbjct: 413 PNLITYTTLLDGFCKKNQ---LEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKA 469

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
             +L +M++ G  PDI T   L+    K    + A   +  +   G   +   YN++I A
Sbjct: 470 LDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHA 529

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           ++  G  +  + LV+ M+  G    E  Y  L+++F + G    A  + + M  ++  P+
Sbjct: 530 FLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPS 589

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
             SC LL+    + G    A      MI  G  PD     S+I    K   + +A NL  
Sbjct: 590 NISCNLLINGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNIREAFNLFN 649

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           +L+ +G +P   TY  L+ W  R  + ++A  LL
Sbjct: 650 KLQAEGIQPDAITYNTLICWHCRAGMFDDAYLLL 683



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 149/332 (44%), Gaps = 17/332 (5%)

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           V  +  ++ A    N +++A  +L+ M ++G VP+ V    L+H  SK   ++ A +  E
Sbjct: 208 VYTFGVVMKALCMVNEVDNACSLLRDMTKHGCVPNSVVYQTLIHALSKRDRVNEALKLLE 267

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
            +   G  PD   +N +I       +   G  LVD M+  G   ++  Y  L+    + G
Sbjct: 268 EMFLMGCLPDVDTFNDVIYGLCRLNRIHEGAKLVDRMLFRGFTPNDITYGVLMNGLCRVG 327

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN-FDYMIRLGHKPDDRCT 435
            V  A  + N +      P     T+L+  Y ++G  D+A +  +D MI+ G +PD    
Sbjct: 328 KVDEAQVLLNKVP----TPNDVHFTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTF 383

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I    KK L+  A++++ ++  +G  P   TYT L+D   +   + EA  +L ++S 
Sbjct: 384 NTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSA 443

Query: 496 LGEAPPFKIQVSLCDMYARA----GIEKKALQALGFLEAKKEQMGPD--DFERIINGLLA 549
            G    F++ +   ++  RA    G   KAL  LG  E   +   PD   F  +I GL  
Sbjct: 444 KG----FELNIMGYNVLLRALCKNGKVPKALDMLG--EMSDKGCKPDIFTFNTLIFGLCK 497

Query: 550 GGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
               +DA  ++  M   G  A+      LI +
Sbjct: 498 VDRKEDALALYRDMLLDGVIANTVTYNTLIHA 529



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 138/315 (43%), Gaps = 5/315 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +S      N+  Y+ L+D   K+N LE+A  +L +M+  G   +I+   VL+    K G 
Sbjct: 406 MSANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGK 465

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           + +A +    +   G +PD   +N++I       + +  ++L   M+  G+  +   Y  
Sbjct: 466 VPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNT 525

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+ +F + G ++ A ++ N M          +   L++A+ + G  ++A   FD M+R  
Sbjct: 526 LIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKD 585

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P +     +I    +   +  AL LL ++   G  P   TY  L++ L ++  I EA 
Sbjct: 586 LVPSNISCNLLINGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNIREAF 645

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
            L  K+   G  P      +L   + RAG+   A   L  L   +    P+D    I   
Sbjct: 646 NLFNKLQAEGIQPDAITYNTLICWHCRAGMFDDAYLLL--LRGVENAFIPNDVTWYI--- 700

Query: 548 LAGGFLQDAQRVHGL 562
           L   F+++  + +G+
Sbjct: 701 LVSNFIKEIGKENGI 715



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 79/321 (24%), Positives = 140/321 (43%), Gaps = 11/321 (3%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F  N   Y  L++   +   +++A+ +L K+      P+ V  T+L++ Y K+G LD A 
Sbjct: 309 FTPNDITYGVLMNGLCRVGKVDEAQVLLNKVP----TPNDVHFTILINGYVKSGRLDEAN 364

Query: 313 E-AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
              ++ +  +G +PD   +N++I      G     + +V+ M  +G   +   Y  LL  
Sbjct: 365 AFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDG 424

Query: 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
           F +   +  AG + N M  + F+  +    +L+ A  + G   +A      M   G KPD
Sbjct: 425 FCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPD 484

Query: 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
                ++I    K +  + AL L  ++  DG      TY  L+    R   I EA +L+ 
Sbjct: 485 IFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVN 544

Query: 492 KISELGEAPPFKIQVS-LCDMYARAGIEKKALQALGFLEAKKEQMGPDDF--ERIINGLL 548
            +   G  P  +I  + L   + + G  +KAL    F E  ++ + P +     +INGL 
Sbjct: 545 DMLFRG-CPLDEITYNGLIKAFCKLGATEKALGL--FDEMVRKDLVPSNISCNLLINGLC 601

Query: 549 AGGFLQDAQRVHGLMEAQGFA 569
             G + +A  +   M  +G A
Sbjct: 602 RVGKVCNALELLRDMIHRGLA 622


>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
 gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
          Length = 561

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 158/355 (44%), Gaps = 15/355 (4%)

Query: 220 PSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAER 278
           P  I +  L+D L +    +  F++ E + +      NV  Y+ +I+   K+  L+ A  
Sbjct: 98  PDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIE 157

Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338
           +L  MNE G  P+++T +VLV    KAG  D+     + +   GFQPD  +YN+++    
Sbjct: 158 LLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLC 217

Query: 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398
            + +    + LV +MI SG   +   Y +L+  F +   V  A ++  +M      P + 
Sbjct: 218 KSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVI 277

Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD------KAL 452
           +   ++    +    D A++    M+     PD    +++I    K   +D       A 
Sbjct: 278 NYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAAC 337

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP---PFKIQV-SL 508
            +L  +++ G  P   TY V+++ L R +   +A  LL ++ +    P    F + + SL
Sbjct: 338 EILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSL 397

Query: 509 CDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLM 563
           C  +        A +  G +  ++ +  P  +  +I+GL  GG +  A RV  LM
Sbjct: 398 CKSHDL----DAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELM 448



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 123/279 (44%), Gaps = 12/279 (4%)

Query: 226 INLLDRLRE--QNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKM 283
           +NLL R  +  Q  QL+         EE    N   Y  LI    K   L+ A  +L +M
Sbjct: 5   LNLLVRAGQHGQAVQLF--------REERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEM 56

Query: 284 NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343
            + GI P +     ++    KAG    A   F+++      PD   +N ++ A V +G+ 
Sbjct: 57  RDRGIPPGVAVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRV 116

Query: 344 KLGMSLVDMMITSGIERSEEI-YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402
           +    + + M TS       + Y  ++    + G +  A ++ ++M      P + + ++
Sbjct: 117 EEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSV 176

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           LVE   +AG  D+  +    M R G +PD     +++    K   LD+AL L+  + + G
Sbjct: 177 LVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSG 236

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
             P   TY  L++   R + ++ A +L+  +SE G  PP
Sbjct: 237 CYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERG-CPP 274



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/320 (20%), Positives = 139/320 (43%), Gaps = 44/320 (13%)

Query: 220 PSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAER 278
           P+ + + +L++   R +     F++ + V+SE     +V +Y+ +I    ++  L+DA+ 
Sbjct: 239 PTVVTYNSLMELFCRSKQVDRAFRLIQ-VMSERGCPPDVINYNTVIAGLCRDARLDDAQA 297

Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR------AKEAFESLRSHGFQPDKKVYNS 332
           +LK+M     VPD++T + ++    K   +D       A E  E ++  G  P+   Y  
Sbjct: 298 LLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAV 357

Query: 333 MIMAYVNAGQPKLGMSLVDMMITS--------------GIERSEEI-------------- 364
           +I     A + +  ++L+  MI S               + +S ++              
Sbjct: 358 VIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERE 417

Query: 365 -------YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
                  Y AL+   ++ G+V  A ++  +M +E F+P + +   +++     G  ++A 
Sbjct: 418 CKPNPVAYAALIDGLSKGGEVDKAVRVFELM-VESFRPGVATYNSVLDGLCGVGRIEEAV 476

Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
              + MI     PD     ++I    + + +++A  L   +E  GF      Y VLV+ L
Sbjct: 477 RMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNEL 536

Query: 478 GRLQLINEAEQLLGKISELG 497
            + + +++A  +  K+ E G
Sbjct: 537 CKKKRLSDAHGVANKLIEAG 556



 Score = 43.9 bits (102), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 58/117 (49%), Gaps = 3/117 (2%)

Query: 219 QPSRIDWINLLDRLREQN-TQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           +P+ + +  L+D L +        +V EL++  ESF+  V  Y+ ++D       +E+A 
Sbjct: 419 KPNPVAYAALIDGLSKGGEVDKAVRVFELMV--ESFRPGVATYNSVLDGLCGVGRIEEAV 476

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           R+++ M      PD  +   L+    +   ++ A E F+++ + GF  +  VYN ++
Sbjct: 477 RMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLV 533


>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12775, mitochondrial; Flags: Precursor
 gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
           Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
           multiple PPR PF|01535 repeats. EST gb|AI999079 comes
           from this gene [Arabidopsis thaliana]
 gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 644

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 138/333 (41%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E  FQ N   Y  +++   K      A  +L+KM E  I  D V  ++++    K G+
Sbjct: 219 MVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGS 278

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           LD A   F  +   GF+ D   YN++I  + NAG+   G  L+  MI   I  +   +  
Sbjct: 279 LDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSV 338

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+ SF + G +R A Q+   M      P   +   L++ + +    ++A    D MI  G
Sbjct: 339 LIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKG 398

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD      +I  Y K N +D  L L  E+   G      TY  LV    +   +  A+
Sbjct: 399 CDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAK 458

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
           +L  ++      P       L D     G  +KAL+  G +E  K ++    +  II+G+
Sbjct: 459 KLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGM 518

Query: 548 LAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
                + DA  +   +  +G     R    +IS
Sbjct: 519 CNASKVDDAWDLFCSLPLKGVKLDARAYNIMIS 551



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 99/219 (45%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N   Y+ LID   KEN LE+A +++  M   G  PDI+T  +L++ Y KA  +D   E F
Sbjct: 367 NTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELF 426

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G   +   YN+++  +  +G+ ++   L   M++  +      Y  LL      
Sbjct: 427 REMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDN 486

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G++  A +I   +   + +  +    +++     A   D A   F  +   G K D R  
Sbjct: 487 GELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAY 546

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
             MI+   +K+ L KA  L  ++ ++G  P   TY +L+
Sbjct: 547 NIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILI 585



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 81/373 (21%), Positives = 152/373 (40%), Gaps = 53/373 (14%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
            V D+++L  A AK    E    + K+M   GI   I T +++++ + +   L  A    
Sbjct: 87  TVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTM 146

Query: 316 ESLRSHGFQPDKKVYNSMI---------------------MAY----------VNA---- 340
             +   G++PD  ++N+++                     M +          VN     
Sbjct: 147 GKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLN 206

Query: 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
           G+    + L+D M+ +G + +E  Y  +L    + G    A ++  + ++EE    L++ 
Sbjct: 207 GKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMEL--LRKMEERNIKLDAV 264

Query: 401 --TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
             +++++   + G  D A + F+ M   G K D     ++I  +      D    LL ++
Sbjct: 265 KYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDM 324

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
            K    P   T++VL+D   +   + EA+QLL ++ + G AP      SL D + +    
Sbjct: 325 IKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRL 384

Query: 519 KKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD--------------AQRVHGLME 564
           ++A+Q +  + +K        F  +ING      + D              A  V     
Sbjct: 385 EEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTL 444

Query: 565 AQGFAASERLKVA 577
            QGF  S +L+VA
Sbjct: 445 VQGFCQSGKLEVA 457



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/301 (21%), Positives = 125/301 (41%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++ L++    E  + +A  ++ +M E G  P ++T   LV+     G +  A    + + 
Sbjct: 161 FNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMV 220

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             GFQP++  Y  ++     +GQ  L M L+  M    I+     Y  ++    + G + 
Sbjct: 221 ETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLD 280

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  + N M I+ F+  + +   L+  +  AG  D        MI+    P+    + +I
Sbjct: 281 NAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLI 340

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            ++ K+  L +A  LL E+ + G  P   TY  L+D   +   + EA Q++  +   G  
Sbjct: 341 DSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCD 400

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P       L + Y +A      L+    +  +        +  ++ G    G L+ A+++
Sbjct: 401 PDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKL 460

Query: 560 H 560
            
Sbjct: 461 F 461



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/268 (19%), Positives = 125/268 (46%), Gaps = 6/268 (2%)

Query: 215 KELLQ----PSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAK 269
           KE++Q    P+ I + +L+D   +E   +   ++ +L++S+     ++  ++ LI+ + K
Sbjct: 357 KEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGC-DPDIMTFNILINGYCK 415

Query: 270 ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKV 329
            N ++D   + ++M+  G++ + VT   LV  + ++G L+ AK+ F+ + S   +PD   
Sbjct: 416 ANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVS 475

Query: 330 YNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389
           Y  ++    + G+ +  + +   +  S +E    IY+ ++        V  A  +   + 
Sbjct: 476 YKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLP 535

Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD 449
           ++  +    +  +++    +     +A   F  M   GH PD+     +I A+   +   
Sbjct: 536 LKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDAT 595

Query: 450 KALNLLLELEKDGFEPGPATYTVLVDWL 477
            A  L+ E++  GF    +T  ++++ L
Sbjct: 596 TAAELIEEMKSSGFPADVSTVKMVINML 623



 Score = 43.1 bits (100), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 3/101 (2%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           + R Y+ +I    +++ L  A+ + +KM E G  PD +T  +L+  +    +   A E  
Sbjct: 542 DARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELI 601

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           E ++S GF  D      M++  +++G+  L  S +DM+ T+
Sbjct: 602 EEMKSSGFPADVSTV-KMVINMLSSGE--LDKSFLDMLSTT 639


>gi|357134934|ref|XP_003569069.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Brachypodium distachyon]
          Length = 642

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 98/400 (24%), Positives = 165/400 (41%), Gaps = 85/400 (21%)

Query: 256 NVRDYSKLIDAHAKEN-------------------------------CLED----AERIL 280
            VR Y+ L+DA  +EN                               C  D    A R+L
Sbjct: 126 TVRVYNHLLDALLRENLVAAVVPVYDNMRKAGVEPNVYTYNLLIKALCQNDRVGAARRML 185

Query: 281 KKMNENGIVPDIVTSTVLVHMYSKAGNLD---------------------------RAKE 313
            +M   G  PD V+ T ++    K   LD                           R +E
Sbjct: 186 DEMARKGCRPDEVSHTTIISALCKLDRLDEARGILAEMTPVGASYNAVVHALCGQFRMRE 245

Query: 314 AF---ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
            F   + +   G +PD   Y S++ A+  A + ++  +++  M+T G   + + +  L++
Sbjct: 246 VFLVVDEMVHRGLRPDTVAYTSIVGAFCKARELRMACAILARMVTEGCVPNVQTFTVLVK 305

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
            F   G V  A  + N M  E + P+  S  +L+      GD  +A   F  M +    P
Sbjct: 306 GFFDDGKVHDALGMWNWMVAEGWAPSTISYNVLIRGLCHIGDLKRALFVFSCMGKSDCLP 365

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           D R  +++I  + K   LD A+++  ++   G +P    YT +VD L +  + ++AE L+
Sbjct: 366 DVRTYSTLIDGFSKAGDLDVAMSIWNDMTNAGCKPNVVVYTNMVDVLCKKVMFDQAENLI 425

Query: 491 GKISELGEAPPFKIQV-----SLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERI 543
            K+S L   PP  +       SLCD+  RAG   +AL    F   ++    P+D  +  +
Sbjct: 426 DKMS-LENCPPNTLTFNTLIRSLCDL-GRAG---RALNV--FHGMRRYGCPPNDRTYNEL 478

Query: 544 INGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQT 583
           ++GL   G  +DA R+   M   GF      +++L+S  T
Sbjct: 479 LHGLFREGNCEDALRMLTEMLNHGF------ELSLVSYNT 512



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 69/309 (22%), Positives = 132/309 (42%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +  E    NV+ ++ L+     +  + DA  +   M   G  P  ++  VL+      G+
Sbjct: 288 MVTEGCVPNVQTFTVLVKGFFDDGKVHDALGMWNWMVAEGWAPSTISYNVLIRGLCHIGD 347

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L RA   F  +      PD + Y+++I  +  AG   + MS+ + M  +G + +  +Y  
Sbjct: 348 LKRALFVFSCMGKSDCLPDVRTYSTLIDGFSKAGDLDVAMSIWNDMTNAGCKPNVVVYTN 407

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++    +      A  + + M +E   P   +   L+ +    G   +A + F  M R G
Sbjct: 408 MVDVLCKKVMFDQAENLIDKMSLENCPPNTLTFNTLIRSLCDLGRAGRALNVFHGMRRYG 467

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P+DR    ++    ++   + AL +L E+   GFE    +Y   +  L ++++I EA 
Sbjct: 468 CPPNDRTYNELLHGLFREGNCEDALRMLTEMLNHGFELSLVSYNTTISGLCQMRMIKEAM 527

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
            LLG++   G  P      ++   Y + G  + A   LG ++A         +  +++GL
Sbjct: 528 ILLGRMIIQGIQPDAFTFNAIIHAYCKEGNVRAAAWMLGRMDAVNCPRNIVAYTSLMSGL 587

Query: 548 LAGGFLQDA 556
            +   L DA
Sbjct: 588 CSQHKLDDA 596



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/309 (21%), Positives = 133/309 (43%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ ++ A   +  + +   ++ +M   G+ PD V  T +V  + KA  L  A      + 
Sbjct: 230 YNAVVHALCGQFRMREVFLVVDEMVHRGLRPDTVAYTSIVGAFCKARELRMACAILARMV 289

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G  P+ + +  ++  + + G+    + + + M+  G   S   Y  L+R     GD++
Sbjct: 290 TEGCVPNVQTFTVLVKGFFDDGKVHDALGMWNWMVAEGWAPSTISYNVLIRGLCHIGDLK 349

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  + + M   +  P + + + L++ + +AGD D A S ++ M   G KP+     +M+
Sbjct: 350 RALFVFSCMGKSDCLPDVRTYSTLIDGFSKAGDLDVAMSIWNDMTNAGCKPNVVVYTNMV 409

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
               KK + D+A NL+ ++  +   P   T+  L+  L  L     A  +   +   G  
Sbjct: 410 DVLCKKVMFDQAENLIDKMSLENCPPNTLTFNTLIRSLCDLGRAGRALNVFHGMRRYGCP 469

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P  +    L     R G  + AL+ L  +     ++    +   I+GL     +++A  +
Sbjct: 470 PNDRTYNELLHGLFREGNCEDALRMLTEMLNHGFELSLVSYNTTISGLCQMRMIKEAMIL 529

Query: 560 HGLMEAQGF 568
            G M  QG 
Sbjct: 530 LGRMIIQGI 538



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 98/227 (43%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           ++    + NV  Y+ ++D   K+   + AE ++ KM+     P+ +T   L+      G 
Sbjct: 393 MTNAGCKPNVVVYTNMVDVLCKKVMFDQAENLIDKMSLENCPPNTLTFNTLIRSLCDLGR 452

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
             RA   F  +R +G  P+ + YN ++      G  +  + ++  M+  G E S   Y  
Sbjct: 453 AGRALNVFHGMRRYGCPPNDRTYNELLHGLFREGNCEDALRMLTEMLNHGFELSLVSYNT 512

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
            +    Q   ++ A  +   M I+  QP   +   ++ AY + G+   A      M  + 
Sbjct: 513 TISGLCQMRMIKEAMILLGRMIIQGIQPDAFTFNAIIHAYCKEGNVRAAAWMLGRMDAVN 572

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
              +     S+++    ++ LD A+  LL++  +G  P  AT+ VLV
Sbjct: 573 CPRNIVAYTSLMSGLCSQHKLDDAMVYLLKMLYEGICPNEATWNVLV 619



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 64/302 (21%), Positives = 114/302 (37%), Gaps = 44/302 (14%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGF---QPDKKV 329
           L+  +  L++M   G+          +  +++AG  DRA + F   R H      P  +V
Sbjct: 71  LDGVQYTLQEMRLRGVACPEGALVAAICAFARAGAADRALKTFYRAR-HDLGCAAPTVRV 129

Query: 330 YNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389
           YN ++ A +        + + D M  +G+E                              
Sbjct: 130 YNHLLDALLRENLVAAVVPVYDNMRKAGVE------------------------------ 159

Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD 449
                P + +  LL++A  Q      AR   D M R G +PD+    ++I+A  K + LD
Sbjct: 160 -----PNVYTYNLLIKALCQNDRVGAARRMLDEMARKGCRPDEVSHTTIISALCKLDRLD 214

Query: 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLC 509
           +A  +L E+      P  A+Y  +V  L     + E   ++ ++   G  P      S+ 
Sbjct: 215 EARGILAEM-----TPVGASYNAVVHALCGQFRMREVFLVVDEMVHRGLRPDTVAYTSIV 269

Query: 510 DMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
             + +A   + A   L  +  +        F  ++ G    G + DA  +   M A+G+A
Sbjct: 270 GAFCKARELRMACAILARMVTEGCVPNVQTFTVLVKGFFDDGKVHDALGMWNWMVAEGWA 329

Query: 570 AS 571
            S
Sbjct: 330 PS 331


>gi|115456691|ref|NP_001051946.1| Os03g0856100 [Oryza sativa Japonica Group]
 gi|41393252|gb|AAS01975.1| putative chloroplastic RNA-binding protein, with alternative
           splicing isoforms [Oryza sativa Japonica Group]
 gi|113550417|dbj|BAF13860.1| Os03g0856100 [Oryza sativa Japonica Group]
 gi|222626198|gb|EEE60330.1| hypothetical protein OsJ_13428 [Oryza sativa Japonica Group]
          Length = 640

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 116/254 (45%), Gaps = 8/254 (3%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS ++D +A+    E+   +  +   +G  PD V   VL  M+ +AG+ D  +  F+ +R
Sbjct: 186 YSAILDVYAQLGMKEEVLALFDRARGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFKEMR 245

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +P+  VYN+++ A    G+P L  +L + M   G+E +     AL + + +    R
Sbjct: 246 EVGIKPNIFVYNALLEALGKTGKPGLARNLFEEMTAEGVEPNARTLTALAKIYGRARWGR 305

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM--IRLGH--KPDDRCT 435
            A Q+   MR ++       C  L+      G   +A   F  M    LG   KPD    
Sbjct: 306 DALQLWEQMREKKLPADNILCNTLLSMCADVGLVGEAEQLFSEMKDPDLGDVPKPDKWSY 365

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            +MI  YG     D+AL L  E+ + G EP   +YT+++  LG+   I EA  +L    E
Sbjct: 366 TAMINIYGSSGDADRALQLFAEMVESGIEPNIMSYTIVIQCLGKAGRIQEAVDVL----E 421

Query: 496 LGEAPPFKIQVSLC 509
            G A   K    LC
Sbjct: 422 AGMAKGLKPDDRLC 435



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 141/312 (45%), Gaps = 9/312 (2%)

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR-SHGFQPDKKVYNSMI 334
           AER+   M  +G+  D +T + L+    +    D+A E FE +  S G  PD+  Y++++
Sbjct: 131 AERLALDMLASGVPLDNITYSTLITAARRCRQFDKAVEWFERMYASDGVLPDEVTYSAIL 190

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
             Y   G  +  ++L D    SG +     +  L + F + GD  G   +   MR    +
Sbjct: 191 DVYAQLGMKEEVLALFDRARGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFKEMREVGIK 250

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P +     L+EA G+ G P  AR+ F+ M   G +P+ R   ++   YG+      AL L
Sbjct: 251 PNIFVYNALLEALGKTGKPGLARNLFEEMTAEGVEPNARTLTALAKIYGRARWGRDALQL 310

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI--SELGEAP-PFKIQ-VSLCD 510
             ++ +            L+     + L+ EAEQL  ++   +LG+ P P K    ++ +
Sbjct: 311 WEQMREKKLPADNILCNTLLSMCADVGLVGEAEQLFSEMKDPDLGDVPKPDKWSYTAMIN 370

Query: 511 MYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
           +Y  +G   +ALQ   F E  +  + P+   +  +I  L   G +Q+A  V     A+G 
Sbjct: 371 IYGSSGDADRALQL--FAEMVESGIEPNIMSYTIVIQCLGKAGRIQEAVDVLEAGMAKGL 428

Query: 569 AASERLKVALIS 580
              +RL   L+S
Sbjct: 429 KPDDRLCGCLLS 440



 Score = 43.9 bits (102), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 18/75 (24%), Positives = 42/75 (56%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +I+ +      + A ++  +M E+GI P+I++ T+++    KAG +  A +  E+  
Sbjct: 365 YTAMINIYGSSGDADRALQLFAEMVESGIEPNIMSYTIVIQCLGKAGRIQEAVDVLEAGM 424

Query: 320 SHGFQPDKKVYNSMI 334
           + G +PD ++   ++
Sbjct: 425 AKGLKPDDRLCGCLL 439


>gi|41393251|gb|AAS01974.1| putative chloroplastic RNA-binding protein, with alternative
           splicing isoforms [Oryza sativa Japonica Group]
 gi|108712189|gb|ABF99984.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 884

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 116/254 (45%), Gaps = 8/254 (3%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS ++D +A+    E+   +  +   +G  PD V   VL  M+ +AG+ D  +  F+ +R
Sbjct: 246 YSAILDVYAQLGMKEEVLALFDRARGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFKEMR 305

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +P+  VYN+++ A    G+P L  +L + M   G+E +     AL + + +    R
Sbjct: 306 EVGIKPNIFVYNALLEALGKTGKPGLARNLFEEMTAEGVEPNARTLTALAKIYGRARWGR 365

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM--IRLGH--KPDDRCT 435
            A Q+   MR ++       C  L+      G   +A   F  M    LG   KPD    
Sbjct: 366 DALQLWEQMREKKLPADNILCNTLLSMCADVGLVGEAEQLFSEMKDPDLGDVPKPDKWSY 425

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            +MI  YG     D+AL L  E+ + G EP   +YT+++  LG+   I EA  +L    E
Sbjct: 426 TAMINIYGSSGDADRALQLFAEMVESGIEPNIMSYTIVIQCLGKAGRIQEAVDVL----E 481

Query: 496 LGEAPPFKIQVSLC 509
            G A   K    LC
Sbjct: 482 AGMAKGLKPDDRLC 495



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 141/312 (45%), Gaps = 9/312 (2%)

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR-SHGFQPDKKVYNSMI 334
           AER+   M  +G+  D +T + L+    +    D+A E FE +  S G  PD+  Y++++
Sbjct: 191 AERLALDMLASGVPLDNITYSTLITAARRCRQFDKAVEWFERMYASDGVLPDEVTYSAIL 250

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
             Y   G  +  ++L D    SG +     +  L + F + GD  G   +   MR    +
Sbjct: 251 DVYAQLGMKEEVLALFDRARGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFKEMREVGIK 310

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P +     L+EA G+ G P  AR+ F+ M   G +P+ R   ++   YG+      AL L
Sbjct: 311 PNIFVYNALLEALGKTGKPGLARNLFEEMTAEGVEPNARTLTALAKIYGRARWGRDALQL 370

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI--SELGEAP-PFKIQ-VSLCD 510
             ++ +            L+     + L+ EAEQL  ++   +LG+ P P K    ++ +
Sbjct: 371 WEQMREKKLPADNILCNTLLSMCADVGLVGEAEQLFSEMKDPDLGDVPKPDKWSYTAMIN 430

Query: 511 MYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
           +Y  +G   +ALQ   F E  +  + P+   +  +I  L   G +Q+A  V     A+G 
Sbjct: 431 IYGSSGDADRALQL--FAEMVESGIEPNIMSYTIVIQCLGKAGRIQEAVDVLEAGMAKGL 488

Query: 569 AASERLKVALIS 580
              +RL   L+S
Sbjct: 489 KPDDRLCGCLLS 500



 Score = 43.5 bits (101), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 18/75 (24%), Positives = 42/75 (56%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +I+ +      + A ++  +M E+GI P+I++ T+++    KAG +  A +  E+  
Sbjct: 425 YTAMINIYGSSGDADRALQLFAEMVESGIEPNIMSYTIVIQCLGKAGRIQEAVDVLEAGM 484

Query: 320 SHGFQPDKKVYNSMI 334
           + G +PD ++   ++
Sbjct: 485 AKGLKPDDRLCGCLL 499


>gi|357509703|ref|XP_003625140.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355500155|gb|AES81358.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 855

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 121/259 (46%), Gaps = 5/259 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI+A       ++A  + KKM +NG+ PD+VT  +++  +       +A   FE ++
Sbjct: 223 YNNLINACGSSGNWKEALNVCKKMTDNGVGPDLVTHNIMLTAFKSGTQYSKALSYFELIK 282

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI--YLALLRSFAQCGD 377
               +PD   +N +I   V   Q    + + + M     E   ++  + +++  ++ CG 
Sbjct: 283 GTHIRPDTTTHNIIIHCLVKLKQYDKAVDIFNSMKEKKSECHPDVVTFTSMIHLYSVCGH 342

Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
           +       N+M  E  +P + S   L+ AY   G  ++A   F+ + + G +PD     S
Sbjct: 343 IENCEAAFNMMLAEGLKPNIVSYNALLGAYAARGMENEALQVFNEIKQNGFRPDVVSYTS 402

Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           ++ AYG+     KA  +   ++++  +P   +Y  L+D  G   L+ +A ++L ++ +  
Sbjct: 403 LLNAYGRSRKPQKAREIFKMIKRNNLKPNIVSYNALIDAYGSNGLLEDAIEILREMEQDK 462

Query: 498 EAPPFKIQVSLCDMYARAG 516
             P     VS+C + A  G
Sbjct: 463 IHPNV---VSICTLLAACG 478



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 79/380 (20%), Positives = 151/380 (39%), Gaps = 46/380 (12%)

Query: 194 ITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLS---- 249
           + D +LSL   +D   LL  W       R    N    +RE   +   +   LV S    
Sbjct: 88  VVDSVLSLTLRDDIEGLLNRW-----IGRFARKNFPFLIRELTQRGSIEHCNLVFSWMKN 142

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           ++++      Y+ +I  HA+ N  + A  +  +M +    PD  T   L++ + +AG   
Sbjct: 143 QKNYCARTDIYNMMIRLHARHNRTDQARGLFFEMQKCRCKPDAETYNALINAHGRAGQWR 202

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE---RSEEIYL 366
            A    + +      P +  YN++I A  ++G  K  +++   M  +G+     +  I L
Sbjct: 203 WAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTDNGVGPDLVTHNIML 262

Query: 367 ALLRSFAQCG------------DVRGAGQITNIM----------------------RIEE 392
              +S  Q               +R      NI+                      +  E
Sbjct: 263 TAFKSGTQYSKALSYFELIKGTHIRPDTTTHNIIIHCLVKLKQYDKAVDIFNSMKEKKSE 322

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P + + T ++  Y   G  +   + F+ M+  G KP+     +++ AY  + + ++AL
Sbjct: 323 CHPDVVTFTSMIHLYSVCGHIENCEAAFNMMLAEGLKPNIVSYNALLGAYAARGMENEAL 382

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
            +  E++++GF P   +YT L++  GR +   +A ++   I      P      +L D Y
Sbjct: 383 QVFNEIKQNGFRPDVVSYTSLLNAYGRSRKPQKAREIFKMIKRNNLKPNIVSYNALIDAY 442

Query: 513 ARAGIEKKALQALGFLEAKK 532
              G+ + A++ L  +E  K
Sbjct: 443 GSNGLLEDAIEILREMEQDK 462



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 109/241 (45%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  ++ +I  ++    +E+ E     M   G+ P+IV+   L+  Y+  G  + A + F
Sbjct: 326 DVVTFTSMIHLYSVCGHIENCEAAFNMMLAEGLKPNIVSYNALLGAYAARGMENEALQVF 385

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             ++ +GF+PD   Y S++ AY  + +P+    +  M+  + ++ +   Y AL+ ++   
Sbjct: 386 NEIKQNGFRPDVVSYTSLLNAYGRSRKPQKAREIFKMIKRNNLKPNIVSYNALIDAYGSN 445

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A +I   M  ++  P + S   L+ A G+ G   +  +        G K +    
Sbjct: 446 GLLEDAIEILREMEQDKIHPNVVSICTLLAACGRCGQKVKIDTVLSAAEMRGIKLNTVAY 505

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            S I +Y      DKA++L   + K   +    TYTVL+    ++    EA   + ++  
Sbjct: 506 NSAIGSYINVGEYDKAIDLYNSMRKKKIKSDSVTYTVLISGCCKMSKFGEALSFMEEMMH 565

Query: 496 L 496
           L
Sbjct: 566 L 566



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 106/245 (43%), Gaps = 4/245 (1%)

Query: 296 TVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMIT 355
            +++ ++++    D+A+  F  ++    +PD + YN++I A+  AGQ +  M+++D M+ 
Sbjct: 154 NMMIRLHARHNRTDQARGLFFEMQKCRCKPDAETYNALINAHGRAGQWRWAMNIMDDMLR 213

Query: 356 SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ 415
           + I  S   Y  L+ +    G+ + A  +   M      P L +  +++ A+       +
Sbjct: 214 AAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTDNGVGPDLVTHNIMLTAFKSGTQYSK 273

Query: 416 ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL--EKDGFEPGPATYTVL 473
           A S F+ +     +PD      +I    K    DKA+++   +  +K    P   T+T +
Sbjct: 274 ALSYFELIKGTHIRPDTTTHNIIIHCLVKLKQYDKAVDIFNSMKEKKSECHPDVVTFTSM 333

Query: 474 VDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE 533
           +        I   E     +   G  P      +L   YA  G+E +ALQ   F E K+ 
Sbjct: 334 IHLYSVCGHIENCEAAFNMMLAEGLKPNIVSYNALLGAYAARGMENEALQV--FNEIKQN 391

Query: 534 QMGPD 538
              PD
Sbjct: 392 GFRPD 396



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 107/252 (42%), Gaps = 12/252 (4%)

Query: 218 LQPSRIDWINLLDRL----REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCL 273
            +P  + + +LL+      + Q  +  FK+    +   + + N+  Y+ LIDA+     L
Sbjct: 393 FRPDVVSYTSLLNAYGRSRKPQKAREIFKM----IKRNNLKPNIVSYNALIDAYGSNGLL 448

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           EDA  IL++M ++ I P++V+   L+    + G   +      +    G + +   YNS 
Sbjct: 449 EDAIEILREMEQDKIHPNVVSICTLLAACGRCGQKVKIDTVLSAAEMRGIKLNTVAYNSA 508

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           I +Y+N G+    + L + M    I+     Y  L+    +      A      M   + 
Sbjct: 509 IGSYINVGEYDKAIDLYNSMRKKKIKSDSVTYTVLISGCCKMSKFGEALSFMEEMMHLKL 568

Query: 394 QPTLESCTLLVEAYGQA----GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD 449
             + E  + ++ AY +     G   +A S F+ M  LG  PD     +M+ AY      +
Sbjct: 569 PMSKEVYSSIICAYSKQASALGQIIEAESTFNLMKSLGCSPDVVTYTAMLDAYNAAEKWE 628

Query: 450 KALNLLLELEKD 461
           K   L  E+E++
Sbjct: 629 KLYALFEEMEEN 640



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 67/349 (19%), Positives = 144/349 (41%), Gaps = 13/349 (3%)

Query: 177 EMILPEEPKPITGKCKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQN 236
           E+I     +P T    +I   ++ L++ +    +    KE       D +     +   +
Sbjct: 279 ELIKGTHIRPDTTTHNIIIHCLVKLKQYDKAVDIFNSMKEKKSECHPDVVTFTSMIHLYS 338

Query: 237 TQLYFKVAELVLS---EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIV 293
              + +  E   +    E  + N+  Y+ L+ A+A      +A ++  ++ +NG  PD+V
Sbjct: 339 VCGHIENCEAAFNMMLAEGLKPNIVSYNALLGAYAARGMENEALQVFNEIKQNGFRPDVV 398

Query: 294 TSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMM 353
           + T L++ Y ++    +A+E F+ ++ +  +P+   YN++I AY + G  +  + ++  M
Sbjct: 399 SYTSLLNAYGRSRKPQKAREIFKMIKRNNLKPNIVSYNALIDAYGSNGLLEDAIEILREM 458

Query: 354 ITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDP 413
               I  +      LL +  +CG       + +   +   +    +    + +Y   G+ 
Sbjct: 459 EQDKIHPNVVSICTLLAACGRCGQKVKIDTVLSAAEMRGIKLNTVAYNSAIGSYINVGEY 518

Query: 414 DQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL-------LELEKDGFEPG 466
           D+A   ++ M +   K D      +I+   K +   +AL+ +       L + K+ +   
Sbjct: 519 DKAIDLYNSMRKKKIKSDSVTYTVLISGCCKMSKFGEALSFMEEMMHLKLPMSKEVYSSI 578

Query: 467 PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
              Y+     LG+   I EAE     +  LG +P      ++ D Y  A
Sbjct: 579 ICAYSKQASALGQ---IIEAESTFNLMKSLGCSPDVVTYTAMLDAYNAA 624



 Score = 46.6 bits (109), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 77/169 (45%), Gaps = 7/169 (4%)

Query: 245 ELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK 304
           +L +S+E + + +  YSK   A  +   + +AE     M   G  PD+VT T ++  Y+ 
Sbjct: 567 KLPMSKEVYSSIICAYSKQASALGQ---IIEAESTFNLMKSLGCSPDVVTYTAMLDAYNA 623

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
           A   ++    FE +  +  + D     +++ A+   GQP   +SL   M    I  S+ I
Sbjct: 624 AEKWEKLYALFEEMEENDVKLDTIACAALMRAFNKGGQPGRVLSLAQSMREKDIPLSDTI 683

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLES-C-TLLVEAYGQAG 411
           +  ++ +     D + A  +  I  +E   P + S C  L + + G++G
Sbjct: 684 FFEMVSACGLLHDWKTA--VDMIKYMEPSLPVISSGCLNLFLNSLGKSG 730


>gi|255555231|ref|XP_002518652.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542033|gb|EEF43577.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 827

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/356 (23%), Positives = 154/356 (43%), Gaps = 42/356 (11%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L ++ F  +V  Y+ LI A+A      DA  + KKM E G  P ++T  V++++Y K G 
Sbjct: 208 LRKDGFDLDVYAYTSLITAYASNGRYRDAVLVFKKMEEEGCKPTLITYNVILNVYGKMGM 267

Query: 308 ------------------------------------LDRAKEAFESLRSHGFQPDKKVYN 331
                                                + A + FE ++  GF PDK  +N
Sbjct: 268 PWSKISGLVHGMKSSGVAPDDYTYNTLISCCRRGSLYEEAAQVFEEMKLSGFSPDKVTFN 327

Query: 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391
           +++  Y  + +PK  M ++  M  SG   S   Y +L+ ++A+ G +R A ++ + M  +
Sbjct: 328 TLLDVYGKSRRPKEAMEVLKEMEFSGFSPSIVTYNSLISAYARDGLLREAMELKDQMVEK 387

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
             +P + + T L+  + +AG  + A   F  M   G KP+     ++I  +G +    + 
Sbjct: 388 GIKPDVFTYTTLLSGFEKAGMDEPAMRIFGEMRAAGCKPNICTFNALIKMHGNRGRFAEM 447

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
           + +  E+E     P   T+  L+   G+  + +E   +  ++   G  P      +L   
Sbjct: 448 MKVFEEIEICNCAPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISA 507

Query: 512 YARAGIEKKALQALG-FLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLME 564
           Y+R G  ++A+      LEA    + PD   +  ++  L  GG  + +++V   M+
Sbjct: 508 YSRCGSFQQAMAVYKRMLEAG---VTPDLSSYNAVLAALARGGLWEQSEKVFAEMK 560



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 135/305 (44%), Gaps = 3/305 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI    + +  E+A ++ ++M  +G  PD VT   L+ +Y K+     A E  + + 
Sbjct: 291 YNTLISCCRRGSLYEEAAQVFEEMKLSGFSPDKVTFNTLLDVYGKSRRPKEAMEVLKEME 350

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             GF P    YNS+I AY   G  +  M L D M+  GI+     Y  LL  F + G   
Sbjct: 351 FSGFSPSIVTYNSLISAYARDGLLREAMELKDQMVEKGIKPDVFTYTTLLSGFEKAGMDE 410

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A +I   MR    +P + +   L++ +G  G   +    F+ +      PD     +++
Sbjct: 411 PAMRIFGEMRAAGCKPNICTFNALIKMHGNRGRFAEMMKVFEEIEICNCAPDIVTWNTLL 470

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
           A +G+  +  +   +  E+++ GF P   T+  L+    R     +A  +  ++ E G  
Sbjct: 471 AVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGSFQQAMAVYKRMLEAGVT 530

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P      ++    AR G+ +++ +   F E K  +  P++     + L A    ++ +R+
Sbjct: 531 PDLSSYNAVLAALARGGLWEQSEKV--FAEMKDGRCKPNELT-YCSLLHAYANSKEIERM 587

Query: 560 HGLME 564
           H L E
Sbjct: 588 HTLAE 592



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 85/389 (21%), Positives = 158/389 (40%), Gaps = 75/389 (19%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F  ++  Y+ LI A+A++  L +A  +  +M E GI PD+ T T L+  + KAG  + A 
Sbjct: 354 FSPSIVTYNSLISAYARDGLLREAMELKDQMVEKGIKPDVFTYTTLLSGFEKAGMDEPAM 413

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQ-----------------PKL---------- 345
             F  +R+ G +P+   +N++I  + N G+                 P +          
Sbjct: 414 RIFGEMRAAGCKPNICTFNALIKMHGNRGRFAEMMKVFEEIEICNCAPDIVTWNTLLAVF 473

Query: 346 ---GM-----SLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
              GM      +   M  +G     + +  L+ ++++CG  + A  +   M      P L
Sbjct: 474 GQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGSFQQAMAVYKRMLEAGVTPDL 533

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKN----------- 446
            S   ++ A  + G  +Q+   F  M     KP++    S++ AY               
Sbjct: 534 SSYNAVLAALARGGLWEQSEKVFAEMKDGRCKPNELTYCSLLHAYANSKEIERMHTLAEE 593

Query: 447 -----------------LLDKALNLLLELEKDGFE-------PGPATYTVLVDWLGRLQL 482
                            L++   +LL+E E   FE       P  +T   ++   GR Q+
Sbjct: 594 IYSGLTEPVPVLLKTLVLVNSKCDLLMETEH-AFEELKKKGSPDLSTLNAMIAIYGRRQM 652

Query: 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DF 540
           + +A ++L  ++E G +P      SL  M++R+   +++ + L  + AK   + PD   +
Sbjct: 653 VAKANEILNFMNESGFSPSLATYNSLMYMHSRSENFERSEEVLKEILAKG--LKPDLISY 710

Query: 541 ERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
             +I      G ++DA R+   M+  G  
Sbjct: 711 NTVIFAYCRNGRMKDASRIFSYMKTYGLV 739



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 115/279 (41%), Gaps = 50/279 (17%)

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           V++ M  K G +  A     +LR  GF  D   Y S+I AY + G+              
Sbjct: 187 VIITMLGKEGKVSAASSILNNLRKDGFDLDVYAYTSLITAYASNGR-------------- 232

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
                                 R A  +   M  E  +PTL +  +++  YG+ G P   
Sbjct: 233 ---------------------YRDAVLVFKKMEEEGCKPTLITYNVILNVYGKMGMPWSK 271

Query: 417 RSNFDY-MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
            S   + M   G  PDD    ++I+   + +L ++A  +  E++  GF P   T+  L+D
Sbjct: 272 ISGLVHGMKSSGVAPDDYTYNTLISCCRRGSLYEEAAQVFEEMKLSGFSPDKVTFNTLLD 331

Query: 476 WLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQM 535
             G+ +   EA ++L ++   G +P      SL   YAR G+ ++A++        K+QM
Sbjct: 332 VYGKSRRPKEAMEVLKEMEFSGFSPSIVTYNSLISAYARDGLLREAMEL-------KDQM 384

Query: 536 -----GPDDF--ERIINGLLAGGFLQDAQRVHGLMEAQG 567
                 PD F    +++G    G  + A R+ G M A G
Sbjct: 385 VEKGIKPDVFTYTTLLSGFEKAGMDEPAMRIFGEMRAAG 423



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 79/160 (49%), Gaps = 4/160 (2%)

Query: 238 QLYFKVAELV--LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTS 295
           Q+  K  E++  ++E  F  ++  Y+ L+  H++    E +E +LK++   G+ PD+++ 
Sbjct: 651 QMVAKANEILNFMNESGFSPSLATYNSLMYMHSRSENFERSEEVLKEILAKGLKPDLISY 710

Query: 296 TVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMIT 355
             ++  Y + G +  A   F  ++++G  PD   YN+ + +Y      +  + +V  MI 
Sbjct: 711 NTVIFAYCRNGRMKDASRIFSYMKTYGLVPDVITYNTFVASYAADSLFEDAIGVVRYMIK 770

Query: 356 SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
            G +R++  Y +++  +  C   R A  I  +  + +  P
Sbjct: 771 HGCKRNQNTYNSIVDGY--CKHSRRADAIMFVSSLNQLDP 808



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 96/220 (43%), Gaps = 9/220 (4%)

Query: 260 YSKLIDAHAKENCLED----AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           Y  L+ A+A    +E     AE I   + E   VP ++ + VLV+  SK   L   + AF
Sbjct: 571 YCSLLHAYANSKEIERMHTLAEEIYSGLTEP--VPVLLKTLVLVN--SKCDLLMETEHAF 626

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E L+  G  PD    N+MI  Y           +++ M  SG   S   Y +L+   ++ 
Sbjct: 627 EELKKKG-SPDLSTLNAMIAIYGRRQMVAKANEILNFMNESGFSPSLATYNSLMYMHSRS 685

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
            +   + ++   +  +  +P L S   ++ AY + G    A   F YM   G  PD    
Sbjct: 686 ENFERSEEVLKEILAKGLKPDLISYNTVIFAYCRNGRMKDASRIFSYMKTYGLVPDVITY 745

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
            + +A+Y   +L + A+ ++  + K G +    TY  +VD
Sbjct: 746 NTFVASYAADSLFEDAIGVVRYMIKHGCKRNQNTYNSIVD 785


>gi|357438845|ref|XP_003589699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478747|gb|AES59950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 806

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/315 (20%), Positives = 141/315 (44%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F+  V  Y+ LI    KE   ++A  ++ +M + G+ P++++ + ++   S  GN++ + 
Sbjct: 240 FEPVVPVYNALIHGVCKECRFKEAFDLMNEMVDRGVDPNVISYSTVISCLSDMGNVELSL 299

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
             F  +   G +P+ + + S+I  +   G+    + L ++MI  G+  +   Y  L+   
Sbjct: 300 AVFGRMFVRGCRPNVQTFTSLIKGFFVRGRVGDAVGLWNLMIREGVSPNVVAYNTLIHGL 359

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
              G++  A  + N M  +  +P + + + ++  + ++GD   A   ++ MI  G +P+ 
Sbjct: 360 CSDGNMDEAISVWNQMEKDSIRPNVTTYSTIIYGFAKSGDLVSACETWNKMINCGCRPNV 419

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
                M+    + ++ D+A +L+  +  DG  P   T+   +  L R   +  A  +L +
Sbjct: 420 VVYTCMVDVLCQMSMFDQAFDLIDNMISDGCPPTVITFNNFIKGLCRAGRVEWAMNVLDQ 479

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
           + +    P  +    L D   RA   ++A   +  LE +K +     +  I+ G    G 
Sbjct: 480 MEKYECLPNIRTYNELLDGLFRANAFREACGLIRELEERKVEFDCVTYNTIMYGFSFNGM 539

Query: 553 LQDAQRVHGLMEAQG 567
            Q   ++ G M   G
Sbjct: 540 HQQVLQLLGKMLVNG 554



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 71/369 (19%), Positives = 152/369 (41%), Gaps = 45/369 (12%)

Query: 231 RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKEN------------------- 271
            L EQ  ++++++ E        + +V+ Y+ ++DA   +N                   
Sbjct: 123 NLGEQGLKMFYRIREF-----GCEPSVKIYNLVLDALLSQNLFKMINALYNNMKSEGLEP 177

Query: 272 ------------C----LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
                       C    ++ A ++L +M+  G  PD V+ T ++    K G++D+A+E  
Sbjct: 178 NVFTYNVLLKALCQNGKVDGACKLLVEMSNKGCDPDDVSYTTVISSMCKLGDVDKAREL- 236

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
               +  F+P   VYN++I       + K    L++ M+  G++ +   Y  ++   +  
Sbjct: 237 ----AMKFEPVVPVYNALIHGVCKECRFKEAFDLMNEMVDRGVDPNVISYSTVISCLSDM 292

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G+V  +  +   M +   +P +++ T L++ +   G    A   ++ MIR G  P+    
Sbjct: 293 GNVELSLAVFGRMFVRGCRPNVQTFTSLIKGFFVRGRVGDAVGLWNLMIREGVSPNVVAY 352

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I        +D+A+++  ++EKD   P   TY+ ++    +   +  A +   K+  
Sbjct: 353 NTLIHGLCSDGNMDEAISVWNQMEKDSIRPNVTTYSTIIYGFAKSGDLVSACETWNKMIN 412

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
            G  P   +   + D+  +  +  +A   +  + +         F   I GL   G ++ 
Sbjct: 413 CGCRPNVVVYTCMVDVLCQMSMFDQAFDLIDNMISDGCPPTVITFNNFIKGLCRAGRVEW 472

Query: 556 AQRVHGLME 564
           A  V   ME
Sbjct: 473 AMNVLDQME 481



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 69/328 (21%), Positives = 144/328 (43%), Gaps = 14/328 (4%)

Query: 240 YFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLV 299
           YFK      +  +F+     Y  +ID   + N ++    +L++M    +         ++
Sbjct: 60  YFKSLS---NSGTFKHTHLTYETMIDKLGRNNEMDGVSYLLQQMKLENVPCSQELFQFVI 116

Query: 300 HMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
             Y ++   ++  + F  +R  G +P  K+YN ++ A ++    K+  +L + M + G+E
Sbjct: 117 KCYRRSNLGEQGLKMFYRIREFGCEPSVKIYNLVLDALLSQNLFKMINALYNNMKSEGLE 176

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
            +   Y  LL++  Q G V GA ++   M  +   P   S T ++ +  + GD D+AR  
Sbjct: 177 PNVFTYNVLLKALCQNGKVDGACKLLVEMSNKGCDPDDVSYTTVISSMCKLGDVDKARE- 235

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
               + +  +P      ++I    K+    +A +L+ E+   G +P   +Y+ ++  L  
Sbjct: 236 ----LAMKFEPVVPVYNALIHGVCKECRFKEAFDLMNEMVDRGVDPNVISYSTVISCLSD 291

Query: 480 LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK-KEQMGPD 538
           +  +  +  + G++   G  P  +   SL   +   G   +   A+G      +E + P+
Sbjct: 292 MGNVELSLAVFGRMFVRGCRPNVQTFTSLIKGFFVRG---RVGDAVGLWNLMIREGVSPN 348

Query: 539 --DFERIINGLLAGGFLQDAQRVHGLME 564
              +  +I+GL + G + +A  V   ME
Sbjct: 349 VVAYNTLIHGLCSDGNMDEAISVWNQME 376



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 52/251 (20%), Positives = 98/251 (39%), Gaps = 18/251 (7%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ ++D   + +  + A  ++  M  +G  P ++T    +    +AG ++ A    
Sbjct: 418 NVVVYTCMVDVLCQMSMFDQAFDLIDNMISDGCPPTVITFNNFIKGLCRAGRVEWAMNVL 477

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + +  +   P+ + YN ++     A   +    L+  +    +E     Y  ++  F+  
Sbjct: 478 DQMEKYECLPNIRTYNELLDGLFRANAFREACGLIRELEERKVEFDCVTYNTIMYGFSFN 537

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G  +   Q+   M +   +    +    V AY + G    A    D +        D  T
Sbjct: 538 GMHQQVLQLLGKMLVNGIKLDTITVNTTVNAYCKLGKVKTAIKVLDNISAEKEFRADIIT 597

Query: 436 ASMIAAYGKKNLL--DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
            ++I  +G  N L  ++A+  L E+ K G  P  AT+ VLV                G  
Sbjct: 598 HTII-LWGICNWLGTEEAVVYLHEMLKRGIFPNIATWNVLVR---------------GFF 641

Query: 494 SELGEAPPFKI 504
           S+LG   P +I
Sbjct: 642 SKLGHMGPIRI 652



 Score = 42.0 bits (97), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 29/140 (20%), Positives = 65/140 (46%), Gaps = 21/140 (15%)

Query: 215 KELLQPSRIDW-INLLDRLREQNTQLYFKVAELVLSEESFQT--NVRDYSKLIDAHAKEN 271
           K L +  R++W +N+LD++                  E ++   N+R Y++L+D   + N
Sbjct: 462 KGLCRAGRVEWAMNVLDQM------------------EKYECLPNIRTYNELLDGLFRAN 503

Query: 272 CLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYN 331
              +A  +++++ E  +  D VT   +++ +S  G   +  +    +  +G + D    N
Sbjct: 504 AFREACGLIRELEERKVEFDCVTYNTIMYGFSFNGMHQQVLQLLGKMLVNGIKLDTITVN 563

Query: 332 SMIMAYVNAGQPKLGMSLVD 351
           + + AY   G+ K  + ++D
Sbjct: 564 TTVNAYCKLGKVKTAIKVLD 583


>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
          Length = 629

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 115/251 (45%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E     NV  +S LIDA  KE  L +AE++  +M +  I PDI T + L++ +     LD
Sbjct: 318 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 377

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            AK  FE + S    P+   YN++I  +  A + + GM L   M   G+  +   Y  L+
Sbjct: 378 EAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLI 437

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
           +   Q GD   A +I   M  +   P + + ++L++   + G  ++A   F+Y+ +   +
Sbjct: 438 QGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKME 497

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD      MI    K   ++   +L   L   G +P    YT ++    R  L  EA+ L
Sbjct: 498 PDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADAL 557

Query: 490 LGKISELGEAP 500
             ++ E G  P
Sbjct: 558 FREMKEDGTLP 568



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 88/409 (21%), Positives = 171/409 (41%), Gaps = 24/409 (5%)

Query: 194 ITDKILSLEKEEDPSPLLAEWKELLQPSRI-DWINLLDRLREQNTQ-------------- 238
           +  K++ L  E D   L +         RI D + L+D++ E   +              
Sbjct: 137 VLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTVTFNTLIHGLF 196

Query: 239 LYFKVAELV-----LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIV 293
           L+ K +E V     + +   Q ++  Y  +++   K   ++ A  +LKKM +  I  D+V
Sbjct: 197 LHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVV 256

Query: 294 TSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMM 353
               ++    K  ++D A   F  + + G +PD   YNS+I    N G+      L+  M
Sbjct: 257 IYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNM 316

Query: 354 ITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDP 413
           I   I  +   + AL+ +F + G +  A ++ + M      P + + + L+  +      
Sbjct: 317 IERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL 376

Query: 414 DQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVL 473
           D+A+  F+ MI     P+     ++I  + K   +++ + L  E+ + G      TY  L
Sbjct: 377 DEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTL 436

Query: 474 VDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE 533
           +  L +    + A+++  K+   G  P       L D   + G  +KAL    +L+  K 
Sbjct: 437 IQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQ--KS 494

Query: 534 QMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
           +M PD   +  +I G+   G ++D   +   +  +G   +  +   +IS
Sbjct: 495 KMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMIS 543



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/225 (21%), Positives = 100/225 (44%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           + S   ++  YS LI+     + L++A+ + + M      P++VT   L+  + KA  ++
Sbjct: 353 KRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVE 412

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
              E F  +   G   +   YN++I     AG   +   +   M++ G+      Y  LL
Sbjct: 413 EGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILL 472

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               + G +  A  +   ++  + +P + +  +++E   +AG  +     F  +   G K
Sbjct: 473 DGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVK 532

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
           P+     +MI+ + +K L ++A  L  E+++DG  P    Y  L+
Sbjct: 533 PNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLI 577



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 125/265 (47%), Gaps = 12/265 (4%)

Query: 221 SRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERIL 280
           S I+   + DRL E          EL++S++ F  NV  Y+ LI    K   +E+   + 
Sbjct: 365 SLINGFCMHDRLDEAKHMF-----ELMISKDCFP-NVVTYNTLIKGFCKAKRVEEGMELF 418

Query: 281 KKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNA 340
           ++M++ G+V + VT   L+    +AG+ D A++ F+ + S G  PD   Y+ ++      
Sbjct: 419 REMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKY 478

Query: 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
           G+ +  + + + +  S +E     Y  ++    + G V     +   + ++  +P +   
Sbjct: 479 GKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIY 538

Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN--LLLEL 458
           T ++  + + G  ++A + F  M   G  PD  C  ++I A  +    DKA +  L+ E+
Sbjct: 539 TTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDG--DKAASAELIKEM 596

Query: 459 EKDGFEPGPATYTVLVDWL--GRLQ 481
              GF    +T +++++ L  GRL+
Sbjct: 597 RSCGFVGDASTISMVINMLHDGRLE 621



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 88/413 (21%), Positives = 172/413 (41%), Gaps = 31/413 (7%)

Query: 176 GEMILPEEPKPITGKCKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDW----INLLDR 231
           GEM+   + +P+    +   +K+LS   +     L+    E +Q  RI +     N+L  
Sbjct: 69  GEMV---QSRPLPSIVEF--NKLLSAIAKMKKFDLVISLGERMQNLRISYDLYSYNILIN 123

Query: 232 LREQNTQLYFKVAEL-VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVP 290
              + +QL   +A L  + +  ++ ++   S L++ +     + DA  ++ +M E G  P
Sbjct: 124 CFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKP 183

Query: 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV 350
           D VT   L+H          A    + +   G QPD   Y +++      G   L +SL+
Sbjct: 184 DTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLL 243

Query: 351 DMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA---Y 407
             M    IE    IY  ++    +   +  A  + N M  +  +P + +   L+     Y
Sbjct: 244 KKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNY 303

Query: 408 GQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGP 467
           G+  D  +  SN   MI     P+    +++I A+ K+  L +A  L  E+ K   +P  
Sbjct: 304 GRWSDASRLLSN---MIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 360

Query: 468 ATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGF 527
            TY+ L++       ++EA+ +            F++ +S  D +         ++  GF
Sbjct: 361 FTYSSLINGFCMHDRLDEAKHM------------FELMISK-DCFPNVVTYNTLIK--GF 405

Query: 528 LEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
            +AK+ + G + F  +    L G  +     + GL +A     ++++   ++S
Sbjct: 406 CKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVS 458



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/309 (21%), Positives = 127/309 (41%), Gaps = 1/309 (0%)

Query: 253 FQTNVRDYSKLIDAHAKENC-LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311
           F     DY + +  +A  N  L+DA  +  +M ++  +P IV    L+   +K    D  
Sbjct: 40  FSAASYDYREKLSRNALLNLKLDDAIGLFGEMVQSRPLPSIVEFNKLLSAIAKMKKFDLV 99

Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
               E +++     D   YN +I  +    Q  L ++++  M+  G E       +LL  
Sbjct: 100 ISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNG 159

Query: 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
           +     +  A  + + M    ++P   +   L+          +A +  D M++ G +PD
Sbjct: 160 YCHSKRISDAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPD 219

Query: 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
                +++    K+  +D AL+LL ++EK   E     Y  ++D L + + I++A  L  
Sbjct: 220 LVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFN 279

Query: 492 KISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGG 551
           K+   G  P      SL       G    A + L  +  +K       F  +I+  +  G
Sbjct: 280 KMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEG 339

Query: 552 FLQDAQRVH 560
            L +A++++
Sbjct: 340 KLVEAEKLY 348


>gi|299473436|emb|CBN77833.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1139

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 138/282 (48%), Gaps = 8/282 (2%)

Query: 218 LQPSRIDWINLLDRL----REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCL 273
           L+P+ + +  L+ R     R +  + +F+  E++  E     +V+  + LI+A AK    
Sbjct: 125 LRPTIVTFSTLISRAGACRRVRLAERFFR--EML--EAGITPDVQAINSLINAFAKAGSP 180

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           + A ++  +M+  G+ P ++T   L+    +AG++DRA++ F  L   G  P+ + ++++
Sbjct: 181 DQALKVFDQMSRYGVTPSVITFNTLIDACGRAGDIDRARQVFSRLSQAGLSPNDRTFSAL 240

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           I ++   GQ     S +  M   G+E +   Y AL+ +  + G +  A Q  + M     
Sbjct: 241 IHSHAVQGQVDEAFSWLQEMRARGLEPNRVTYSALINACGRAGQLARAFQTLDEMFGTGI 300

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
           +P + + T L++A G+  + + +   F  M   G  P+    ++++ A  K + LD A  
Sbjct: 301 EPNVVTWTTLIDACGKGKELEWSFKLFKEMRERGTVPNGVTCSALMDACLKADELDLAFA 360

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
           +L  +   G EP   TYT L+    RL   + A  +L ++++
Sbjct: 361 VLEHMLDVGIEPTEVTYTSLLTQCARLGQADRAGIVLDELNK 402



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 119/262 (45%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           +S LI        +  AER  ++M E GI PD+     L++ ++KAG+ D+A + F+ + 
Sbjct: 132 FSTLISRAGACRRVRLAERFFREMLEAGITPDVQAINSLINAFAKAGSPDQALKVFDQMS 191

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
            +G  P    +N++I A   AG       +   +  +G+  ++  + AL+ S A  G V 
Sbjct: 192 RYGVTPSVITFNTLIDACGRAGDIDRARQVFSRLSQAGLSPNDRTFSALIHSHAVQGQVD 251

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A      MR    +P   + + L+ A G+AG   +A    D M   G +P+     ++I
Sbjct: 252 EAFSWLQEMRARGLEPNRVTYSALINACGRAGQLARAFQTLDEMFGTGIEPNVVTWTTLI 311

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            A GK   L+ +  L  E+ + G  P   T + L+D   +   ++ A  +L  + ++G  
Sbjct: 312 DACGKGKELEWSFKLFKEMRERGTVPNGVTCSALMDACLKADELDLAFAVLEHMLDVGIE 371

Query: 500 PPFKIQVSLCDMYARAGIEKKA 521
           P      SL    AR G   +A
Sbjct: 372 PTEVTYTSLLTQCARLGQADRA 393



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 108/251 (43%), Gaps = 45/251 (17%)

Query: 263 LIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA---FESLR 319
           L DA   ++C+   E +L       + P IVT + L+   S+AG   R + A   F  + 
Sbjct: 104 LGDAGRIDDCVAAYEAMLACQ----LRPTIVTFSTLI---SRAGACRRVRLAERFFREML 156

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  PD +  NS+I A+  AG P   + + D M   G+                     
Sbjct: 157 EAGITPDVQAINSLINAFAKAGSPDQALKVFDQMSRYGV--------------------- 195

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
                          P++ +   L++A G+AGD D+AR  F  + + G  P+DR  +++I
Sbjct: 196 --------------TPSVITFNTLIDACGRAGDIDRARQVFSRLSQAGLSPNDRTFSALI 241

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            ++  +  +D+A + L E+   G EP   TY+ L++  GR   +  A Q L ++   G  
Sbjct: 242 HSHAVQGQVDEAFSWLQEMRARGLEPNRVTYSALINACGRAGQLARAFQTLDEMFGTGIE 301

Query: 500 PPFKIQVSLCD 510
           P      +L D
Sbjct: 302 PNVVTWTTLID 312



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 79/189 (41%)

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
            LR+    G +         M   + +PT+ + + L+   G       A   F  M+  G
Sbjct: 100 FLRALGDAGRIDDCVAAYEAMLACQLRPTIVTFSTLISRAGACRRVRLAERFFREMLEAG 159

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD +   S+I A+ K    D+AL +  ++ + G  P   T+  L+D  GR   I+ A 
Sbjct: 160 ITPDVQAINSLINAFAKAGSPDQALKVFDQMSRYGVTPSVITFNTLIDACGRAGDIDRAR 219

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
           Q+  ++S+ G +P  +   +L   +A  G   +A   L  + A+  +     +  +IN  
Sbjct: 220 QVFSRLSQAGLSPNDRTFSALIHSHAVQGQVDEAFSWLQEMRARGLEPNRVTYSALINAC 279

Query: 548 LAGGFLQDA 556
              G L  A
Sbjct: 280 GRAGQLARA 288



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 74/148 (50%), Gaps = 2/148 (1%)

Query: 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320
           S L+    + + ++ A ++L+ M E    PD  T  +L++    AG LD+A E  E  R+
Sbjct: 546 SDLLQLFGQADQVDAAFKVLEGMVERRDSPDGETWLLLLNAVDTAGALDKAVELMERSRA 605

Query: 321 --HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
             HG + ++  Y++++ A   A +      +V  M  +G++ +E  YLAL+       D 
Sbjct: 606 EGHGSEINELTYSALLGACGRAKKLARAFRIVQSMRETGVKPTEGTYLALMEVCRHSRDS 665

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEA 406
           + A ++   M  E  +P + S T L++A
Sbjct: 666 KAAVEVFEAMETEGVRPGVRSYTSLLKA 693



 Score = 41.2 bits (95), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS L+ A  +   L  A RI++ M E G+ P   T   L+ +   + +   A E FE++ 
Sbjct: 617 YSALLGACGRAKKLARAFRIVQSMRETGVKPTEGTYLALMEVCRHSRDSKAAVEVFEAME 676

Query: 320 SHGFQPDKKVYNSMIMA 336
           + G +P  + Y S++ A
Sbjct: 677 TEGVRPGVRSYTSLLKA 693


>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
 gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
          Length = 1041

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/365 (23%), Positives = 157/365 (43%), Gaps = 6/365 (1%)

Query: 218 LQPSRIDWINLLD-RLREQNTQLYFKVAELV--LSEESFQTNVRDYSKLIDAHAKENCLE 274
           ++P    + N+++  L+EQNT    +V +L+  + + +          +I+   +   +E
Sbjct: 407 IKPDTQTYNNMIEGYLKEQNTS---RVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIE 463

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           DA R+ + M   G+ P+ V  T L+  + + G    A    + +   G QPD   YNS+I
Sbjct: 464 DASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVI 523

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
           +    + + +     +  MI  G++ +   Y AL+  + + G+++ A +    M      
Sbjct: 524 IGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIA 583

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P    CT L++ Y + G   +A S F  M+     PD R  +++I    +   L  A+ L
Sbjct: 584 PNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMEL 643

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
           L E  + G  P   TY  ++    +   I +A QL   + + G +P      +L +   +
Sbjct: 644 LSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCK 703

Query: 515 AGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERL 574
           AG  ++A +    +  K        +  II+G    G L  A R+   M  +G      +
Sbjct: 704 AGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFV 763

Query: 575 KVALI 579
             ALI
Sbjct: 764 YSALI 768



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 151/320 (47%), Gaps = 1/320 (0%)

Query: 228 LLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENG 287
           L D L+    +L+++    +L E +   +V  Y+ LI+AH +    ++ +R+L +M E G
Sbjct: 208 LSDLLKANKLELFWRFYNGML-EANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKG 266

Query: 288 IVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGM 347
             P +VT  V++    +AG +D A E  + +   G   D   Y+ +I  +    +     
Sbjct: 267 CSPSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAK 326

Query: 348 SLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAY 407
            +++ M + G++     Y AL+  F + GD   A ++   M     +  L +   LV+  
Sbjct: 327 LMLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGV 386

Query: 408 GQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGP 467
            + GD ++A +  + MI +G KPD +   +MI  Y K+    +  +LL E++K    P  
Sbjct: 387 CKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTA 446

Query: 468 ATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGF 527
            T  ++++ L R   I +A ++   +  LG  P   I  +L   + + G  ++A++ L  
Sbjct: 447 YTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKV 506

Query: 528 LEAKKEQMGPDDFERIINGL 547
           ++ K  Q     +  +I GL
Sbjct: 507 MDKKGVQPDVLCYNSVIIGL 526



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/335 (23%), Positives = 146/335 (43%), Gaps = 5/335 (1%)

Query: 242 KVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM 301
           +V E+++S    + N   Y+ LI  H +E   ++A RILK M++ G+ PD++    ++  
Sbjct: 467 RVFEIMVSL-GVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIG 525

Query: 302 YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS 361
             K+  ++ AK+    +   G +P+   Y ++I  Y  +G+ ++       M+  GI  +
Sbjct: 526 LCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPN 585

Query: 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421
           + +  AL+  + + G    A  I   M      P + + + L+    + G    A     
Sbjct: 586 DVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLS 645

Query: 422 YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ 481
             +  G  PD     S+I+ + K+  + KA  L   + + G  P   TY  L++ L +  
Sbjct: 646 EFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAG 705

Query: 482 LINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF- 540
            I  A +L   I   G A       ++ D Y ++G   KA +   F E   + + PD F 
Sbjct: 706 EIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRL--FDEMTLKGVPPDSFV 763

Query: 541 -ERIINGLLAGGFLQDAQRVHGLMEAQGFAASERL 574
              +I+G    G  + A  +      +GFA++  L
Sbjct: 764 YSALIDGCRKEGNTEKALSLFLESVQKGFASTSSL 798



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 122/278 (43%), Gaps = 3/278 (1%)

Query: 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320
           + LID + KE    +A  I + M    + PD+ T + L+H   + G L  A E       
Sbjct: 590 TALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLE 649

Query: 321 HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRG 380
            G  PD   YNS+I  +   G       L + M   GI  +   Y AL+    + G++  
Sbjct: 650 KGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIER 709

Query: 381 AGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIA 440
           A ++ + +  +       +   +++ Y ++G+  +A   FD M   G  PD    +++I 
Sbjct: 710 ARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALID 769

Query: 441 AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
              K+   +KAL+L LE  + GF    ++   L+D   +   + EA QLL  + +    P
Sbjct: 770 GCRKEGNTEKALSLFLESVQKGF-ASTSSLNALMDGFCKSGKVIEANQLLEDMVDKHVKP 828

Query: 501 PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
                  L D + + G  K+A Q   F++ +K  + P+
Sbjct: 829 DHVTYTILIDYHCKTGFLKEAEQF--FVDMQKRNLMPN 864



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 119/265 (44%), Gaps = 1/265 (0%)

Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311
           S   +VR YS LI    +   L+ A  +L +  E G+VPD+ T   ++  + K G + +A
Sbjct: 616 SVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKA 675

Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
            +  E +   G  P+   YN++I     AG+ +    L D +   G+  +   Y  ++  
Sbjct: 676 FQLHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDG 735

Query: 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
           + + G++  A ++ + M ++   P     + L++   + G+ ++A S F   ++ G    
Sbjct: 736 YCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKGFAST 795

Query: 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
               A ++  + K   + +A  LL ++     +P   TYT+L+D+  +   + EAEQ   
Sbjct: 796 SSLNA-LMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFV 854

Query: 492 KISELGEAPPFKIQVSLCDMYARAG 516
            + +    P      +L   Y  AG
Sbjct: 855 DMQKRNLMPNALTYTALLSGYNMAG 879



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 128/297 (43%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LID   ++    +A R+ ++M   G+  ++ T   LV    K G++++A      + 
Sbjct: 344 YTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMI 403

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +PD + YN+MI  Y+          L+  M  S +  +      ++    + G + 
Sbjct: 404 MVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIE 463

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++  IM     +P     T L++ + Q G   +A      M + G +PD  C  S+I
Sbjct: 464 DASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVI 523

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
               K   +++A + L+E+ + G +P   TY  L+    +   +  A++   ++   G A
Sbjct: 524 IGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIA 583

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDA 556
           P   +  +L D Y + G   +A      +  +        +  +I+GLL  G LQ A
Sbjct: 584 PNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGA 640



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 73/345 (21%), Positives = 151/345 (43%), Gaps = 4/345 (1%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++ ++    +V  YS LID   K+    +A+ +L++M   G+ P  V  T L+  + + G
Sbjct: 296 LMDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQG 355

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           +   A    E + + G + +   YN+++      G  +   +L++ MI  GI+   + Y 
Sbjct: 356 DSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYN 415

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            ++  + +  +      + + M+     PT  +C +++    + G  + A   F+ M+ L
Sbjct: 416 NMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSL 475

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G KP+     ++I  + ++    +A+ +L  ++K G +P    Y  ++  L + + + EA
Sbjct: 476 GVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEA 535

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF--ERII 544
           +  L ++ E G  P      +L   Y ++G  + A +   F E     + P+D     +I
Sbjct: 536 KDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRY--FKEMLGCGIAPNDVVCTALI 593

Query: 545 NGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQ 589
           +G    G   +A  +   M  +      R   ALI     N + Q
Sbjct: 594 DGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQ 638



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 100/228 (43%), Gaps = 1/228 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + ++    N+  Y+ LI+   K   +E A  +   +   G+  + VT   ++  Y K+GN
Sbjct: 682 MCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGN 741

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L +A   F+ +   G  PD  VY+++I      G  +  +SL    +  G   +  +  A
Sbjct: 742 LSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKGFASTSSLN-A 800

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+  F + G V  A Q+   M  +  +P   + T+L++ + + G   +A   F  M +  
Sbjct: 801 LMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRN 860

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
             P+     ++++ Y       +   L  E+     EP   T++V++D
Sbjct: 861 LMPNALTYTALLSGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMID 908



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 69/323 (21%), Positives = 132/323 (40%), Gaps = 4/323 (1%)

Query: 263 LIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG 322
           LID + K+   ++A         NG V  ++    L+    KA  L+     +  +    
Sbjct: 172 LIDGYKKKGLFDEAVSFFLGAKRNGFVVGLLCCNGLLSDLLKANKLELFWRFYNGMLEAN 231

Query: 323 FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAG 382
              D   Y  +I A+  AG  K G  L+  M   G   S   Y  ++    + G+V  A 
Sbjct: 232 VLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVDEAF 291

Query: 383 QITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAY 442
           ++  +M  +     + + ++L++ +G+     +A+   + M   G KP      ++I  +
Sbjct: 292 ELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGF 351

Query: 443 GKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPF 502
            ++    +A  +  E+   G +    TY  LV  + +   + +A+ LL ++  +G  P  
Sbjct: 352 MRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDT 411

Query: 503 KIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFE--RIINGLLAGGFLQDAQRVH 560
           +   ++ + Y +     +    L   E KK  + P  +    IINGL   G ++DA RV 
Sbjct: 412 QTYNNMIEGYLKEQNTSRVKDLLS--EMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVF 469

Query: 561 GLMEAQGFAASERLKVALISSQT 583
            +M + G   +  +   LI    
Sbjct: 470 EIMVSLGVKPNAVIYTTLIKGHV 492



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 79/172 (45%)

Query: 260  YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
            Y+ LID H K   L++AE+    M +  ++P+ +T T L+  Y+ AG        F+ + 
Sbjct: 833  YTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNMAGRRSEMFALFDEMI 892

Query: 320  SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
            +   +PD   ++ MI A++  G     + LVD M+  G   S+ +   L+    +   V 
Sbjct: 893  AKDIEPDGVTWSVMIDAHLKEGDHVKTLKLVDDMLKKGGNVSKNVCHVLIDPLCRKEHVS 952

Query: 380  GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
               ++   +  +    +L +C+ LV  + +AG  D A      M+R    PD
Sbjct: 953  EVLKVLEKIEEQGLNLSLATCSTLVRCFHKAGKMDGAARVLKSMVRFKWVPD 1004



 Score = 40.0 bits (92), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 4/119 (3%)

Query: 218  LQPSRIDWINLLD-RLREQNTQLYFKVAELVLSEE-SFQTNVRDYSKLIDAHAKENCLED 275
            ++P  + W  ++D  L+E +     K+ + +L +  +   NV     LID   ++  + +
Sbjct: 896  IEPDGVTWSVMIDAHLKEGDHVKTLKLVDDMLKKGGNVSKNVCHV--LIDPLCRKEHVSE 953

Query: 276  AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
              ++L+K+ E G+   + T + LV  + KAG +D A    +S+    + PD    N +I
Sbjct: 954  VLKVLEKIEEQGLNLSLATCSTLVRCFHKAGKMDGAARVLKSMVRFKWVPDSTELNDLI 1012


>gi|357499781|ref|XP_003620179.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495194|gb|AES76397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 517

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/346 (22%), Positives = 156/346 (45%), Gaps = 26/346 (7%)

Query: 224 DWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKM 283
           D ++L +RL +QN                   N+ +++K++ +  K         + +KM
Sbjct: 45  DAVSLFNRLLQQNPT---------------PPNI-EFNKILGSLVKSKHYHTVLYLSQKM 88

Query: 284 NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA------- 336
              GI P++V   +L++ + + G++  A      +   G++P+    N++I         
Sbjct: 89  EFRGIKPNLVNCNILINSFCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLNGKI 148

Query: 337 ---YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
              +   G+ K  + L + MI   I      +  L+  F + G V+ A  +  +M I+  
Sbjct: 149 HDKHCIVGKLKDAVDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGI 208

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
           +P + +   L++ Y      ++A+S F+ M +LG  PD +  + +I  + K  ++D+A+ 
Sbjct: 209 KPGVVTYNSLMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAME 268

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
           LL E+      P   TY+ L+D L +   I+ A +L+ ++ + G+ P      S+ D   
Sbjct: 269 LLKEMHHKQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALC 328

Query: 514 RAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           +      A+  L  ++ +  Q     +  +I GL   G L+DA++V
Sbjct: 329 KNHQVDNAIALLTQMKNQGIQPNMYTYTILIKGLCQSGKLEDARKV 374



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 115/239 (48%)

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           V  Y+ L+D +     +  A+ I   M + G+ PDI + ++L++ + K   +D A E  +
Sbjct: 212 VVTYNSLMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLK 271

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
            +      P+   Y+S+I     +G+    + LVD M   G   +   Y ++L +  +  
Sbjct: 272 EMHHKQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNH 331

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
            V  A  +   M+ +  QP + + T+L++   Q+G  + AR  F+ ++  GH  +     
Sbjct: 332 QVDNAIALLTQMKNQGIQPNMYTYTILIKGLCQSGKLEDARKVFEDLLVKGHNLNVYTYT 391

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            MI  +  K L D+AL LL ++E +G  P   TY +++  L +      AE+LL ++ E
Sbjct: 392 VMIQGFCDKGLFDEALTLLSKMEDNGCIPNAKTYEIIILSLFKKDENEMAEKLLCEMIE 450


>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
          Length = 1269

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/367 (22%), Positives = 162/367 (44%), Gaps = 10/367 (2%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSE---ESFQTNVRDYSKLIDAHAKENCLE 274
           +QP++I + NL+  L +         A L+L +   +S + +   Y+ +I+ H + +  +
Sbjct: 358 VQPNKITYDNLVRGLCKMGQ---MDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKK 414

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           DA R+L +M   GI P++ T ++++H   ++G  ++A +  E + + G +P+  VY  +I
Sbjct: 415 DAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLI 474

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
             Y   G   L   + D M    +      Y +L+   ++ G V  + +    M+     
Sbjct: 475 SGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLL 534

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P   + + L+  Y + GD + A      M+  G KP+D     ++ +Y K + ++K  + 
Sbjct: 535 PNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSST 594

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
              +   G       Y +L+  L     +  A ++L  I + G  P   +  SL     +
Sbjct: 595 FKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCK 654

Query: 515 AGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572
               +KA   L   E  K+ + P+   +  +I+GL   G +  A+ V   + A+G   + 
Sbjct: 655 TADREKAFGILD--EMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNC 712

Query: 573 RLKVALI 579
               +LI
Sbjct: 713 VTYTSLI 719



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 149/343 (43%), Gaps = 2/343 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +S    + NV  Y+ LID   +E   ++A +++K+M   G+ P+ +T   LV    K G 
Sbjct: 318 MSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQ 377

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +DRA    + +     +PD   YN +I  +      K    L+  M  +GI  +   Y  
Sbjct: 378 MDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSI 437

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++    Q G+   A  +   M  +  +P       L+  Y + G+   A   FD M ++ 
Sbjct: 438 MIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVN 497

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD  C  S+I    K   ++++     ++++ G  P   TY+ L+    +   +  AE
Sbjct: 498 VLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAE 557

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
           QL+ ++ + G  P   I + L + Y ++   +K       +  +   +    +  +I+ L
Sbjct: 558 QLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNL 617

Query: 548 LAGGFLQDAQRVHGLMEAQGFAASERLKVALIS--SQTFNRQR 588
            + G ++ A RV   +E  G      +  +LIS   +T +R++
Sbjct: 618 SSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREK 660



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 72/354 (20%), Positives = 157/354 (44%), Gaps = 7/354 (1%)

Query: 218 LQPSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L+P+   +  L+    RE N  L  ++ +  +++ +   ++  Y+ LI   +K   +E++
Sbjct: 463 LKPNAFVYAPLISGYCREGNVSLACEIFD-KMTKVNVLPDLYCYNSLIFGLSKVGRVEES 521

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
            +   +M E G++P+  T + L+H Y K G+L+ A++  + +   G +P+  +Y  ++ +
Sbjct: 522 TKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLES 581

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           Y  +   +   S    M+  G+     IY  L+ + +  G++  A ++ + +      P 
Sbjct: 582 YFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPD 641

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           +   + L+    +  D ++A    D M + G  P+  C  ++I    K   +  A N+  
Sbjct: 642 VHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFN 701

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
            +   G  P   TYT L+D   ++  I+ A  L  ++   G  P   +   L    + AG
Sbjct: 702 SILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAG 761

Query: 517 IEKKALQAL--GFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
             ++A+  +   FL           F  +++G    G +Q+  ++  ++  +G 
Sbjct: 762 DLEQAMFLIEEMFLRGHASI---SSFNNLVDGFCKRGKMQETLKLLHVIMGRGL 812



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/312 (21%), Positives = 132/312 (42%), Gaps = 1/312 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E     N   YS LI  + K   LE AE+++++M + G+ P+ V    L+  Y K+ +
Sbjct: 528 MQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDD 587

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +++    F+S+   G   D ++Y  +I    ++G  +    ++  +  +G      +Y +
Sbjct: 588 IEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSS 647

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    +  D   A  I + M  +   P +     L++   ++GD   AR+ F+ ++  G
Sbjct: 648 LISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKG 707

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P+     S+I    K   +  A  L  E+   G  P    Y+VL         + +A 
Sbjct: 708 LVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAM 767

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
            L+ ++   G A       +L D + + G  ++ L+ L  +  +         E II+GL
Sbjct: 768 FLIEEMFLRGHASISSFN-NLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGL 826

Query: 548 LAGGFLQDAQRV 559
              G L +   +
Sbjct: 827 SEAGKLSEVHTI 838



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 140/322 (43%), Gaps = 4/322 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           +   ++A+ K    + A+++L +M E G   + VT  VL+    ++G ++ A    + + 
Sbjct: 225 HGSALEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDME 284

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
            +G  PD   Y ++I     + +     +L+D M  + ++ +  +Y  L+  F + G+  
Sbjct: 285 DYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNAD 344

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++   M     QP   +   LV    + G  D+A      M+R  H+PD      +I
Sbjct: 345 EAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLII 404

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             + + +    A  LL E+E  G  P   TY++++  L +     +A  LL +++  G  
Sbjct: 405 EGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLK 464

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQ 557
           P   +   L   Y R G    A +   F +  K  + PD   +  +I GL   G ++++ 
Sbjct: 465 PNAFVYAPLISGYCREGNVSLACEI--FDKMTKVNVLPDLYCYNSLIFGLSKVGRVEEST 522

Query: 558 RVHGLMEAQGFAASERLKVALI 579
           +    M+ +G   +E     LI
Sbjct: 523 KYFAQMQERGLLPNEFTYSGLI 544



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/328 (20%), Positives = 144/328 (43%), Gaps = 4/328 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N   Y+ LI    +   +E+A    K M + G+VPD  T   L++   K+   + AK   
Sbjct: 256 NTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALL 315

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + +     +P+  VY ++I  ++  G       ++  M+ +G++ ++  Y  L+R   + 
Sbjct: 316 DEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKM 375

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A  +   M  +  +P   +  L++E + +      A      M   G  P+    
Sbjct: 376 GQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTY 435

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
           + MI    +    +KA +LL E+   G +P    Y  L+    R   ++ A ++  K+++
Sbjct: 436 SIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTK 495

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFER--IINGLLAGGFL 553
           +   P      SL    ++ G  +++ +   F + ++  + P++F    +I+G L  G L
Sbjct: 496 VNVLPDLYCYNSLIFGLSKVGRVEESTKY--FAQMQERGLLPNEFTYSGLIHGYLKNGDL 553

Query: 554 QDAQRVHGLMEAQGFAASERLKVALISS 581
           + A+++   M   G   ++ + + L+ S
Sbjct: 554 ESAEQLVQRMLDTGLKPNDVIYIDLLES 581



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 120/293 (40%), Gaps = 30/293 (10%)

Query: 215 KELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           K+ + P+ + +  L+D L +     Y +     +  +    N   Y+ LID   K   + 
Sbjct: 670 KKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDIS 729

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFES--LRSHGFQPDKKVYNS 332
           +A  +  +M   GI PD    +VL    S AG+L++A    E   LR H        +N+
Sbjct: 730 NAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHA---SISSFNN 786

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR-IE 391
           ++  +   G+ +  + L+ +++  G+                   V  A  I NI+  + 
Sbjct: 787 LVDGFCKRGKMQETLKLLHVIMGRGL-------------------VPNALTIENIISGLS 827

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQAR---SNFDYMIRLGHKPDDRCTASMIAAYGKKNLL 448
           E     E  T+ VE   Q      AR   S F  MI  G  P D     MI  + K+  L
Sbjct: 828 EAGKLSEVHTIFVE-LQQKTSESAARHFSSLFMDMINQGKIPLD-VVDDMIRDHCKEGNL 885

Query: 449 DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
           DKAL L   +       G ++Y  +VD L R   ++EA  LL ++ + G   P
Sbjct: 886 DKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLKEMDKRGNLQP 938


>gi|10177016|dbj|BAB10204.1| maize crp1 protein-like [Arabidopsis thaliana]
          Length = 680

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 90/382 (23%), Positives = 161/382 (42%), Gaps = 35/382 (9%)

Query: 192 KLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEE 251
           +L+ D I+   K  DPS  L    +LL  +             Q T L  K A LV    
Sbjct: 241 QLVNDIIMGFAKSGDPSKAL----QLLGMA-------------QATGLSAKTATLV---- 279

Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311
                      +I A A      +AE + +++ ++GI P       L+  Y K G L  A
Sbjct: 280 ----------SIISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDA 329

Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
           +     +   G  PD+  Y+ +I AYVNAG+ +    ++  M    ++ +  ++  LL  
Sbjct: 330 ESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAG 389

Query: 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
           F   G+ +   Q+   M+    +P  +   ++++ +G+    D A + FD M+  G +PD
Sbjct: 390 FRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPD 449

Query: 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
                ++I  + K      A  +   +E+ G  P   TY ++++  G  +  ++ ++LLG
Sbjct: 450 RVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLG 509

Query: 492 KISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLA 549
           K+   G  P      +L D+Y ++G    A++ L   E K   + P    +  +IN    
Sbjct: 510 KMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLE--EMKSVGLKPSSTMYNALINAYAQ 567

Query: 550 GGFLQDAQRVHGLMEAQGFAAS 571
            G  + A     +M + G   S
Sbjct: 568 RGLSEQAVNAFRVMTSDGLKPS 589



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 119/242 (49%), Gaps = 18/242 (7%)

Query: 216 ELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVR--------DYSKLIDAH 267
           E ++P R+ W  L+D         + K    +++EE F+   R         Y+ +I+++
Sbjct: 444 EGIEPDRVTWNTLID--------CHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSY 495

Query: 268 AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK 327
             +   +D +R+L KM   GI+P++VT T LV +Y K+G  + A E  E ++S G +P  
Sbjct: 496 GDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSS 555

Query: 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNI 387
            +YN++I AY   G  +  ++   +M + G++ S     +L+ +F +      A  +   
Sbjct: 556 TMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQY 615

Query: 388 MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA--YGKK 445
           M+    +P + + T L++A  +     +    ++ MI  G KPD +  + + +A  Y K+
Sbjct: 616 MKENGVKPDVVTYTTLMKALIRVDKFQKVPVVYEEMIMSGCKPDRKARSMLRSALRYMKQ 675

Query: 446 NL 447
            L
Sbjct: 676 TL 677



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 69/345 (20%), Positives = 139/345 (40%), Gaps = 37/345 (10%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK--EAFES 317
           Y+ LI A A+ N +E A  ++ KM ++G   D V  ++++   +++  +D       ++ 
Sbjct: 171 YNALIGACARNNDIEKALNLIAKMRQDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYKE 230

Query: 318 LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDM------------------------- 352
           +     + D ++ N +IM +  +G P   + L+ M                         
Sbjct: 231 IERDKLELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGR 290

Query: 353 ----------MITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402
                     +  SGI+     Y ALL+ + + G ++ A  + + M      P   + +L
Sbjct: 291 TLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSL 350

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           L++AY  AG  + AR     M     +P+    + ++A +  +    K   +L E++  G
Sbjct: 351 LIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIG 410

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522
            +P    Y V++D  G+   ++ A     ++   G  P      +L D + + G    A 
Sbjct: 411 VKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAE 470

Query: 523 QALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
           +    +E +        +  +IN         D +R+ G M++QG
Sbjct: 471 EMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQG 515



 Score = 42.4 bits (98), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 69/147 (46%), Gaps = 6/147 (4%)

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
           ++I A  + N ++KALNL+ ++ +DG++     Y++++  L R   I+    +L ++ + 
Sbjct: 173 ALIGACARNNDIEKALNLIAKMRQDGYQSDFVNYSLVIQSLTRSNKIDSV--MLLRLYKE 230

Query: 497 GEAPPFKIQVSLCD----MYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
            E    ++ V L +     +A++G   KALQ LG  +A            II+ L   G 
Sbjct: 231 IERDKLELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGR 290

Query: 553 LQDAQRVHGLMEAQGFAASERLKVALI 579
             +A+ +   +   G     R   AL+
Sbjct: 291 TLEAEALFEELRQSGIKPRTRAYNALL 317


>gi|255541015|ref|XP_002511572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550687|gb|EEF52174.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 735

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 137/312 (43%), Gaps = 13/312 (4%)

Query: 198 ILSLEKEEDPSPLLAEWKELL----QPSRIDWINLLDRLREQNTQLYFKVAELV--LSEE 251
           I+ + ++ D    LA ++E L    +PS + +  L+  L +Q   L  K  +L+  +S+E
Sbjct: 335 IIGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQG--LVLKALQLMNDMSKE 392

Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311
               ++  Y+ +I+   K  C+ DA  +L      G +PDI T   L+  Y K   +D A
Sbjct: 393 GMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNA 452

Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
               +S+ SHG  PD   YNS++     A +P+  M    M++  G   +   Y  L+ S
Sbjct: 453 IGILDSMWSHGVTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIES 512

Query: 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM---IRLGH 428
             +   V  A  +   +R     P   S   ++  +   GD D+A   F  M    R+ H
Sbjct: 513 LCKARKVTEALDLLEEIRNRGLIPDPVSFGTVISGFCNNGDLDEAYQLFRRMEQQYRICH 572

Query: 429 KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQ 488
                    MI A+ +K  +D A  L  E+   G +P   TY V++D   ++  +N    
Sbjct: 573 TVATY--NIMINAFSEKLDMDMAQKLFHEMGDKGCDPDSYTYRVMIDGFCKVGNVNSGYD 630

Query: 489 LLGKISELGEAP 500
            L K  E+G  P
Sbjct: 631 FLLKEIEIGFVP 642



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 130/295 (44%), Gaps = 6/295 (2%)

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           +AE  L KM   G+ PD  T   +++ YSK G +  A    +  +  GF PD+  Y S+I
Sbjct: 276 EAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTYCSLI 335

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
           +     G     ++L +  +  G++ S  +Y  L++  +Q G V  A Q+ N M  E   
Sbjct: 336 IGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMS 395

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P + +  L++    + G    A +  +  I  G+ PD     ++I  Y K+  +D A+ +
Sbjct: 396 PDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGI 455

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
           L  +   G  P   TY  +++ L +     +  +    I E G  P       L +   +
Sbjct: 456 LDSMWSHGVTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIESLCK 515

Query: 515 AGIEKKALQALGFL-EAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQ 566
           A   +K  +AL  L E +   + PD   F  +I+G    G L +A ++   ME Q
Sbjct: 516 A---RKVTEALDLLEEIRNRGLIPDPVSFGTVISGFCNNGDLDEAYQLFRRMEQQ 567



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 143/331 (43%), Gaps = 15/331 (4%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +  +  + N   Y  +I    +EN   +A  +  KM   GI P I T   L+H+  K G+
Sbjct: 172 MPSQGCELNAVVYCTVISGFYEENYQVEAYELFNKMLRLGIFPHIATFNKLMHILCKKGH 231

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV-------DMMITSGIER 360
           L   ++    +  +G  P+   +N  I      G  +   S V         M+  G+E 
Sbjct: 232 LQEGEKLLNKVLKNGVCPNLFTFNIFIQGLCRKGVLEGANSKVVEAENYLHKMVNKGLEP 291

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT-LESCTLLVEAYGQAGDPDQARSN 419
            +  Y  ++  +++ G ++ A +I    + + F P     C+L++    Q GD D A + 
Sbjct: 292 DDFTYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTYCSLII-GVCQDGDIDHALAL 350

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
           F+  +  G KP      ++I    ++ L+ KAL L+ ++ K+G  P   TY ++++ L +
Sbjct: 351 FEEALGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCK 410

Query: 480 LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK-KEQMGPD 538
           +  +++A  LL      G  P      +L D Y +     K   A+G L++     + PD
Sbjct: 411 MGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCK---RLKMDNAIGILDSMWSHGVTPD 467

Query: 539 --DFERIINGLLAGGFLQDAQRVHGLMEAQG 567
              +  I+NGL      +D      ++  +G
Sbjct: 468 VITYNSILNGLCKAAKPEDVMETFKMIMEKG 498



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 101/241 (41%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +I  ++K   ++DA RILK     G VPD  T   L+    + G++D A   FE   
Sbjct: 296 YNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEAL 355

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +P   +YN++I      G     + L++ M   G+      Y  ++    + G V 
Sbjct: 356 GKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVS 415

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  + N    + + P + +   L++ Y +    D A    D M   G  PD     S++
Sbjct: 416 DANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSIL 475

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
               K    +  +     + + G  P   TY +L++ L + + + EA  LL +I   G  
Sbjct: 476 NGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIESLCKARKVTEALDLLEEIRNRGLI 535

Query: 500 P 500
           P
Sbjct: 536 P 536



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 72/326 (22%), Positives = 138/326 (42%), Gaps = 19/326 (5%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           ++  Y+ +++   +      A ++  +M   GI PD+ T T+ +  + +      A    
Sbjct: 110 SIFSYNAIMNILVEYGYFNQAHKVYLRMKHEGIAPDVCTFTIRIKSFCRTKRPLAALRLL 169

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
            ++ S G + +  VY ++I  +           L + M+  GI      +  L+    + 
Sbjct: 170 NNMPSQGCELNAVVYCTVISGFYEENYQVEAYELFNKMLRLGIFPHIATFNKLMHILCKK 229

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS------NFDY-MIRLGH 428
           G ++   ++ N +      P L +  + ++   + G  + A S      N+ + M+  G 
Sbjct: 230 GHLQEGEKLLNKVLKNGVCPNLFTFNIFIQGLCRKGVLEGANSKVVEAENYLHKMVNKGL 289

Query: 429 KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA-- 486
           +PDD    ++I  Y K   +  A  +L + +  GF P   TY  L+  + +   I+ A  
Sbjct: 290 EPDDFTYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALA 349

Query: 487 --EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFER 542
             E+ LGK    G  P   +  +L    ++ G+  KALQ +   +  KE M PD   +  
Sbjct: 350 LFEEALGK----GLKPSIVLYNTLIKGLSQQGLVLKALQLMN--DMSKEGMSPDIWTYNL 403

Query: 543 IINGLLAGGFLQDAQRVHGLMEAQGF 568
           +INGL   G + DA  +     A+G+
Sbjct: 404 VINGLCKMGCVSDANNLLNAAIAKGY 429



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 73/343 (21%), Positives = 139/343 (40%), Gaps = 47/343 (13%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMN---ENGIVPDIVTSTVLVHMYS 303
           V  E+ F+     Y ++I+        +  ER+L +M    +N ++  +  S +    Y 
Sbjct: 30  VKKEDGFKHTFLTYKRMIEKLGFHGEFDAMERVLMEMRLNVDNSLLEGVYVSAM--RNYG 87

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363
           + G +  A + FE +  +  +P    YN+++   V  G                  ++ +
Sbjct: 88  RKGKVQEAVDVFERMDFYNCEPSIFSYNAIMNILVEYGY---------------FNQAHK 132

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
           +YL                     M+ E   P + + T+ ++++ +   P  A    + M
Sbjct: 133 VYLR--------------------MKHEGIAPDVCTFTIRIKSFCRTKRPLAALRLLNNM 172

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483
              G + +     ++I+ + ++N   +A  L  ++ + G  P  AT+  L+  L +   +
Sbjct: 173 PSQGCELNAVVYCTVISGFYEENYQVEAYELFNKMLRLGIFPHIATFNKLMHILCKKGHL 232

Query: 484 NEAEQLLGKISELGEAP---PFKIQV-SLCDMYARAGIEKKALQALGFLEAKKEQ-MGPD 538
            E E+LL K+ + G  P    F I +  LC      G   K ++A  +L     + + PD
Sbjct: 233 QEGEKLLNKVLKNGVCPNLFTFNIFIQGLCRKGVLEGANSKVVEAENYLHKMVNKGLEPD 292

Query: 539 DF--ERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
           DF    II G    G +QDA R+    + +GF   E    +LI
Sbjct: 293 DFTYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTYCSLI 335


>gi|410109909|gb|AFV61034.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           viburnoides]
          Length = 431

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 117/261 (44%), Gaps = 6/261 (2%)

Query: 218 LQPSRIDWINLLD---RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           L+PS + +  L++   RL + +     K A L       Q +V  YS LI+   KE+  +
Sbjct: 173 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLA---SGVQPDVYTYSVLINGXCKESKXD 229

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           DA  +  +M   G+VP+ V  T L+  + K G +D A E ++ + S    PD   YN++I
Sbjct: 230 DANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLI 289

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
                 G  K    L+D M   G++  +  Y  L+    + GD+  A +    M  E  +
Sbjct: 290 YGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLIDGCCKEGDLDXAFEHXKRMIQENXR 349

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
                 T L+      G    A      M+ +G KPD R    +I  + KK  + K   L
Sbjct: 350 LDXVXYTALISGLCXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKL 409

Query: 455 LLELEKDGFEPGPATYTVLVD 475
           L E+++DG  P   TY VL++
Sbjct: 410 LKEMQRDGHVPSVVTYNVLMN 430



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 85/191 (44%)

Query: 285 ENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPK 344
           E G    +    +L+H + K G++  A+  F+++   G +P    YN+++  Y+  G   
Sbjct: 135 ECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 194

Query: 345 LGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
            G  L   M+ SG++     Y  L+    +      A ++ + M ++   P     T L+
Sbjct: 195 EGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLI 254

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
           + + + G  D A   +  M+     PD     ++I    KK  L +A +L+ E+   G +
Sbjct: 255 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLK 314

Query: 465 PGPATYTVLVD 475
           P   TYT L+D
Sbjct: 315 PDKITYTTLID 325



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 65/328 (19%), Positives = 133/328 (40%), Gaps = 2/328 (0%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGI-VPDIVTSTVLVHMYSKAGNLDRAK 312
           ++++  +S LI A+ +   L DA    +   E+   VP      VL H+  K        
Sbjct: 69  RSDJYVFSGLITAYLESGFLRDAIECYRLTXEHKFWVPFDTCRKVLEHL-MKLKYFKLVW 127

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
             +E +   G+      +N ++  +   G  +J  S+ D +   G+  S   Y  L+  +
Sbjct: 128 GFYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGY 187

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + GD+    ++ + M     QP + + ++L+    +    D A   FD M+  G  P+ 
Sbjct: 188 IRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNX 247

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               ++I  + K   +D A+ +  ++      P   TY  L+  L +   + +A  L+ +
Sbjct: 248 VXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDE 307

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
           +S  G  P      +L D   + G    A +    +  +  ++    +  +I+GL   G 
Sbjct: 308 MSXKGLKPDKITYTTLIDGCCKEGDLDXAFEHXKRMIQENXRLDXVXYTALISGLCXEGR 367

Query: 553 LQDAQRVHGLMEAQGFAASERLKVALIS 580
             DA+++   M + G     R    +I+
Sbjct: 368 SVDAEKMLREMLSVGLKPDARTYTMIIN 395


>gi|449530353|ref|XP_004172160.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like, partial [Cucumis sativus]
          Length = 312

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 112/248 (45%)

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A+ I  +M      P+I T T LV+  ++ G  ++A+E FE ++  G++PD   YN+++ 
Sbjct: 15  AQNIFDEMRTQRCKPNICTFTALVNALAREGLCEKAEEIFEQMQEAGYEPDVYAYNALME 74

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
           +Y  AG P     +  +M   G E     Y  ++ ++ + G    A  +   M+     P
Sbjct: 75  SYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEEMKRIGITP 134

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
           T++S  LL+ AY  AG+  +       M + G KPD     SM+  YG+     K  +L 
Sbjct: 135 TMKSHMLLLSAYSSAGNVAKCEDIIGQMHKSGLKPDTFVMNSMLNLYGRLGQFGKMEDLF 194

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
             ++K       +TY +L++  GR   +   E+L   +      P      S    Y+R 
Sbjct: 195 STMQKGPCRADISTYNILINVYGRAGFVERMEELFQLLPAKNLEPDVVTWTSRIGAYSRK 254

Query: 516 GIEKKALQ 523
            + K+ L+
Sbjct: 255 KLYKRCLE 262



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 114/257 (44%), Gaps = 3/257 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  ++ L++A A+E   E AE I ++M E G  PD+     L+  YS+AG    A E F
Sbjct: 30  NICTFTALVNALAREGLCEKAEEIFEQMQEAGYEPDVYAYNALMESYSRAGFPYGAAEIF 89

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             ++  G +PD+  YN M+ AY  AG  +   ++ + M   GI  + + ++ LL +++  
Sbjct: 90  SLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEEMKRIGITPTMKSHMLLLSAYSSA 149

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G+V     I   M     +P       ++  YG+ G   +    F  M +   + D    
Sbjct: 150 GNVAKCEDIIGQMHKSGLKPDTFVMNSMLNLYGRLGQFGKMEDLFSTMQKGPCRADISTY 209

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +I  YG+   +++   L   L     EP   T+T  +    R +L     +L  K+ +
Sbjct: 210 NILINVYGRAGFVERMEELFQLLPAKNLEPDVVTWTSRIGAYSRKKLYKRCLELFEKMID 269

Query: 496 LGEAP---PFKIQVSLC 509
            G  P     K+ +S C
Sbjct: 270 AGCYPDGGTAKVLLSAC 286



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 91/202 (45%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ ++DA+ +    EDA+ + ++M   GI P + +  +L+  YS AGN+ + ++    + 
Sbjct: 104 YNIMVDAYGRAGLHEDAQAVFEEMKRIGITPTMKSHMLLLSAYSSAGNVAKCEDIIGQMH 163

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +PD  V NSM+  Y   GQ      L   M           Y  L+  + + G V 
Sbjct: 164 KSGLKPDTFVMNSMLNLYGRLGQFGKMEDLFSTMQKGPCRADISTYNILINVYGRAGFVE 223

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
              ++  ++  +  +P + + T  + AY +     +    F+ MI  G  PD      ++
Sbjct: 224 RMEELFQLLPAKNLEPDVVTWTSRIGAYSRKKLYKRCLELFEKMIDAGCYPDGGTAKVLL 283

Query: 440 AAYGKKNLLDKALNLLLELEKD 461
           +A   +  +++  N++  + KD
Sbjct: 284 SACSSEEQIEQVTNVVRTMHKD 305



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 104/232 (44%)

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           +V   +  +  ++ D M T   + +   + AL+ + A+ G    A +I   M+   ++P 
Sbjct: 6   FVQESKSHMAQNIFDEMRTQRCKPNICTFTALVNALAREGLCEKAEEIFEQMQEAGYEPD 65

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           + +   L+E+Y +AG P  A   F  M  +G +PD      M+ AYG+  L + A  +  
Sbjct: 66  VYAYNALMESYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFE 125

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
           E+++ G  P   ++ +L+        + + E ++G++ + G  P   +  S+ ++Y R G
Sbjct: 126 EMKRIGITPTMKSHMLLLSAYSSAGNVAKCEDIIGQMHKSGLKPDTFVMNSMLNLYGRLG 185

Query: 517 IEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
              K       ++    +     +  +IN     GF++  + +  L+ A+  
Sbjct: 186 QFGKMEDLFSTMQKGPCRADISTYNILINVYGRAGFVERMEELFQLLPAKNL 237



 Score = 45.4 bits (106), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 63/137 (45%), Gaps = 8/137 (5%)

Query: 451 ALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCD 510
           A N+  E+     +P   T+T LV+ L R  L  +AE++  ++ E G  P      +L +
Sbjct: 15  AQNIFDEMRTQRCKPNICTFTALVNALAREGLCEKAEEIFEQMQEAGYEPDVYAYNALME 74

Query: 511 MYARAGIEKKALQALGFLEAKKEQMG--PD--DFERIINGLLAGGFLQDAQRVHGLMEAQ 566
            Y+RAG    A +    +    + MG  PD   +  +++     G  +DAQ V   M+  
Sbjct: 75  SYSRAGFPYGAAEIFSLM----QHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEEMKRI 130

Query: 567 GFAASERLKVALISSQT 583
           G   + +  + L+S+ +
Sbjct: 131 GITPTMKSHMLLLSAYS 147


>gi|410109931|gb|AFV61045.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           macrophylla]
          Length = 431

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 120/261 (45%), Gaps = 6/261 (2%)

Query: 218 LQPSRIDWINLLD---RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           L+PS + +  L++   RL + +     K A L       Q +V  YS LI+   KE+ ++
Sbjct: 173 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLA---SGVQPDVYTYSVLINGLCKESKMD 229

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           DA  +  +M   G+VP+ V  T L+  + K G +D A E ++ + S    PD   YN++I
Sbjct: 230 DANELFDEMLVKGLVPNGVIFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLI 289

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
                 G  K    L+D M   G++  +  Y  L+    + GD+  A +    M  E  +
Sbjct: 290 YGLCKKGDLKQVHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKQMIQENIR 349

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
               + T L+    Q G    A      M+ +G KPD R    +I  + KK  + K   L
Sbjct: 350 LDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPDARTYTMIINEFCKKGDVWKGSKL 409

Query: 455 LLELEKDGFEPGPATYTVLVD 475
           L E+++DG  P   TY VL++
Sbjct: 410 LKEMQRDGHVPSVVTYNVLMN 430



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/267 (20%), Positives = 112/267 (41%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E  +  ++  ++ L+    K+  +  A+ +   + + G+ P +V+   L++ Y + G+LD
Sbjct: 135 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 194

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
                  ++ + G QPD   Y+ +I       +      L D M+  G+  +  I+  L+
Sbjct: 195 EGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVIFTTLI 254

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               + G V  A +I   M  +   P L +   L+    + GD  Q     D M   G K
Sbjct: 255 DGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQVHHLIDEMSMKGLK 314

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     ++I    K+  LD A     ++ ++        YT L+  L +     +AE++
Sbjct: 315 PDKITYTTLIDGCCKEGDLDTAFEHRKQMIQENIRLDEVAYTALISGLCQEGRSVDAEKM 374

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAG 516
           L ++  +G  P  +    + + + + G
Sbjct: 375 LREMLNVGLKPDARTYTMIINEFCKKG 401



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/328 (19%), Positives = 131/328 (39%), Gaps = 2/328 (0%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGI-VPDIVTSTVLVHMYSKAGNLDRAK 312
           ++++  +S LI A+ +   L DA    +   E+   VP      VL H+  K        
Sbjct: 69  RSDIYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHL-MKLKYFKLVW 127

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
             ++ +   G+      +N ++  +   G  ++  S+ D +   G+  S   Y  L+  +
Sbjct: 128 GFYKEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGY 187

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + GD+    ++ + M     QP + + ++L+    +    D A   FD M+  G  P+ 
Sbjct: 188 IRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNG 247

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               ++I  + K   +D A+ +  ++      P   TY  L+  L +   + +   L+ +
Sbjct: 248 VIFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQVHHLIDE 307

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
           +S  G  P      +L D   + G    A +    +  +  ++    +  +I+GL   G 
Sbjct: 308 MSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKQMIQENIRLDEVAYTALISGLCQEGR 367

Query: 553 LQDAQRVHGLMEAQGFAASERLKVALIS 580
             DA+++   M   G     R    +I+
Sbjct: 368 SVDAEKMLREMLNVGLKPDARTYTMIIN 395


>gi|414887034|tpg|DAA63048.1| TPA: crs2 associated factor1 [Zea mays]
          Length = 617

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/286 (23%), Positives = 134/286 (46%), Gaps = 1/286 (0%)

Query: 245 ELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK 304
           E  L+ E  +   R Y+ L+  + +   L++AE++L +M++ G+ PD  T ++LV  Y++
Sbjct: 288 EFFLAGE-IKPRTRAYNALLKGYVRIASLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTR 346

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
           AG  + A+   + + + G +P   V++ ++  + + G  +   +++  M  SG+      
Sbjct: 347 AGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHF 406

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
           Y  ++ +F +   +  A    N MR E  +P + +   L++A+ + G  D+A   F+ M 
Sbjct: 407 YNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFEEMR 466

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
                P       MI   G++   +    +L E+++ G  P   TYT LVD  GR     
Sbjct: 467 ESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYK 526

Query: 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEA 530
           EA   +  +   G  P   +  +L + YA+ G+    +     ++A
Sbjct: 527 EAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLRPDVITYTTLMKA 572



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 92/397 (23%), Positives = 165/397 (41%), Gaps = 28/397 (7%)

Query: 197 KILSLEKEEDPSPLLAEWKELLQ--------PSRIDWINLLDRLREQNTQ---------- 238
           ++LSL +E D  P LA +  LL         P       LL  LRE   +          
Sbjct: 176 RLLSLLREHDFLPDLASYSHLLASLLNTRDPPDAALLERLLGDLRESRLEPDAPLFSDLI 235

Query: 239 -LYFKVA------ELVLSEESFQTNVRD--YSKLIDAHAKENCLEDAERILKKMNENG-I 288
             + + A      EL+ S ++     R    + LI A      + +AE +  +    G I
Sbjct: 236 SAFARAALPDAALELLASAQAIGLTPRSNAVTALISALGTAGRVAEAEALFLEFFLAGEI 295

Query: 289 VPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMS 348
            P       L+  Y +  +L  A++  + +   G  PD+  Y+ ++ AY  AG+ +    
Sbjct: 296 KPRTRAYNALLKGYVRIASLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARI 355

Query: 349 LVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYG 408
           L+  M   G++ S  ++  +L  F   GD + A  +   M+    +P      ++++ +G
Sbjct: 356 LLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFG 415

Query: 409 QAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPA 468
           +      A   F+ M   G +PD     ++I A+ K    D+A  L  E+ +    PG  
Sbjct: 416 KYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFEEMRESNCPPGTT 475

Query: 469 TYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFL 528
           TY ++++ LG  +     E +L ++ E G  P      +L D+Y R+G  K+A+  +  +
Sbjct: 476 TYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAM 535

Query: 529 EAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEA 565
           +A   +  P  +  ++N     G   D      LM+A
Sbjct: 536 KADGLKPSPTMYHALVNAYAQRGLRPDVITYTTLMKA 572



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 73/164 (44%), Gaps = 23/164 (14%)

Query: 215 KELLQPSRIDWINLLDRLREQNTQLYFKVAELV--LSEESFQTNVRDYSKLIDAHAKENC 272
           +E ++P  + W  L+D         + + AEL   + E +       Y+ +I+   ++  
Sbjct: 432 EEGIEPDVVTWNTLIDA--HCKGGRHDRAAELFEEMRESNCPPGTTTYNIMINLLGEQEH 489

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS------------ 320
            E  E +L +M E G+VP+I+T T LV +Y ++G    A +  E++++            
Sbjct: 490 WEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHA 549

Query: 321 -------HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG 357
                   G +PD   Y +++ A +   Q      + + MITSG
Sbjct: 550 LVNAYAQRGLRPDVITYTTLMKALIRVEQFDKVPVIYEEMITSG 593


>gi|357441365|ref|XP_003590960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480008|gb|AES61211.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 150/341 (43%), Gaps = 7/341 (2%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L +++ +  V  Y+ LI+A   +  +++A ++L +M   G+ PD  T  V+V+   K G 
Sbjct: 207 LLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNGMCKEGM 266

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           LDRA E    +  +G       YN ++   +N G+ + G  L+  M+  G E +   Y  
Sbjct: 267 LDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPITYST 326

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+ +  + G +  A  +  +M+ +   P   S   L+ A  + G  D A    D MI  G
Sbjct: 327 LITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREGKVDLAIEFLDDMISGG 386

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
           H PD     S++A+  K    D+ALN+  +L + G  P   +Y  L    G L    +  
Sbjct: 387 HLPDILSYNSILASLCKNGNADEALNIFEKLGEVGCPPNAGSYNTL---FGALWSSGDKI 443

Query: 488 QLLGKISEL---GEAPPFKIQVSLCDMYARAGIEKKALQAL-GFLEAKKEQMGPDDFERI 543
           + LG I E+   G  P      SL     R G+  +A++ L    E++K Q     +  +
Sbjct: 444 RALGMILEMLSNGIDPDEITYNSLISCLCRDGLVDQAIELLVDMFESEKCQPTVISYNTV 503

Query: 544 INGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTF 584
           + GL     + DA  V   M  +G   +E     LI    F
Sbjct: 504 LLGLCKVQRIIDAIEVLAAMVNEGCLPNETTYTLLIQGIGF 544



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 138/310 (44%), Gaps = 15/310 (4%)

Query: 238 QLYFKVAELVLSEESFQTNVRD--YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTS 295
           Q  F+V E   ++     + RD  + K ++   K    +++   L+ M   G  PD++  
Sbjct: 56  QQQFRVNETKPTKHDQDYDFRDTNFMKTLNRSCKSAKYDESLYFLQHMVNRGYKPDVILC 115

Query: 296 TVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMIT 355
           T L+  +     +++A +  E L  HG +PD   YN++I  +  A +      ++D M  
Sbjct: 116 TKLIKGFFNMKKIEKAIQVMEILEKHG-KPDVFAYNAVISGFCKADRVDHASKVLDRMKK 174

Query: 356 SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ 415
            G E     Y  L+ +F   G +  A ++ + +  +  +PT+ + T+L+EA    G  D+
Sbjct: 175 RGFEPDVVTYNILIGNFCGRGRLDLALRVMDQLLKDNCKPTVITYTILIEATITQGGIDE 234

Query: 416 ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
           A    D M+  G +PD      ++    K+ +LD+A   L  + K+G   G +TY +L+ 
Sbjct: 235 AMKLLDEMLSRGLRPDRYTYNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLR 294

Query: 476 WLGRLQLINE-----AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEA 530
                 L+NE      E+L+  +   G  P      +L     R G   +A   L  +  
Sbjct: 295 -----DLLNEGKWEYGEKLMSDMLVKGCEPNPITYSTLITALCRDGKIDEAKNVLKVM-- 347

Query: 531 KKEQMGPDDF 540
           K++ + PD +
Sbjct: 348 KEKALAPDGY 357



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 1/154 (0%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           V+ E++   +   Y  LI A  +E  ++ A   L  M   G +PDI++   ++    K G
Sbjct: 346 VMKEKALAPDGYSYDPLISALCREGKVDLAIEFLDDMISGGHLPDILSYNSILASLCKNG 405

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           N D A   FE L   G  P+   YN++  A  ++G     + ++  M+++GI+  E  Y 
Sbjct: 406 NADEALNIFEKLGEVGCPPNAGSYNTLFGALWSSGDKIRALGMILEMLSNGIDPDEITYN 465

Query: 367 ALLRSFAQCGDVRGAGQ-ITNIMRIEEFQPTLES 399
           +L+    + G V  A + + ++   E+ QPT+ S
Sbjct: 466 SLISCLCRDGLVDQAIELLVDMFESEKCQPTVIS 499


>gi|115446945|ref|NP_001047252.1| Os02g0582300 [Oryza sativa Japonica Group]
 gi|50253069|dbj|BAD29317.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536783|dbj|BAF09166.1| Os02g0582300 [Oryza sativa Japonica Group]
          Length = 845

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 118/248 (47%), Gaps = 4/248 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E  ++ + R Y+ ++D   +E   ++AE +L++M E G+ P +VT T +++ Y K G 
Sbjct: 280 MKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGR 339

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A    E ++  G +P+   YN+++  + N G+    M+L++ M   G+      Y  
Sbjct: 340 MSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNL 399

Query: 368 LLRSFAQC--GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
           L+R   QC  G +  A ++  +M  +       +   L+ A  + G  DQA S FD +  
Sbjct: 400 LIR--GQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLET 457

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
            G KP+     S+I    K    D A   L ++   G  P   TY+  ++ L +++   E
Sbjct: 458 RGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQE 517

Query: 486 AEQLLGKI 493
               +G++
Sbjct: 518 GLSFIGEM 525



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/340 (20%), Positives = 148/340 (43%), Gaps = 19/340 (5%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI     +  +E A R+L+ M  +G++ D  T   L++   K G  D+A   F+SL 
Sbjct: 397 YNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLE 456

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC-GDV 378
           + G +P+   +NS+I     +G+  +    ++ M+++G       Y + +    +  G  
Sbjct: 457 TRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQ 516

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
            G   I  +++ ++ +P+  + T+++    +  +       +  M+  G  PD     + 
Sbjct: 517 EGLSFIGEMLQ-KDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTS 575

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           + AY  +  L++A N+L+E+ K+G       Y  L+D    +   + A  +L +++ +  
Sbjct: 576 MRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVAS 635

Query: 499 APP----FKIQVSLCDM--------YARAGIEK--KALQALGFLEA-KKEQMGPDD--FE 541
            P     F +   L  M           AG+ K  +     G  +  KK +  P+   + 
Sbjct: 636 VPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYS 695

Query: 542 RIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
            I+ G    G  ++A  +  LM+    + +E +  AL++ 
Sbjct: 696 SILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTC 735



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 122/282 (43%), Gaps = 9/282 (3%)

Query: 198 ILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLD-RLREQNTQLYFKVAELVLSE---ES 252
           + + E+ E+   +L   KEL  +PS   +  ++D R RE+      K AE +L E   + 
Sbjct: 264 LCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKA----KEAEEMLQEMFEKG 319

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
               V   + +I+A+ KE  + DA R+L+ M   G  P++ T   LV  +   G + +A 
Sbjct: 320 LAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAM 379

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
                +R+ G  PD   YN +I      G  +    L+ +M   G+   +  Y AL+ + 
Sbjct: 380 TLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINAL 439

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + G    A  + + +     +P   +   L+    ++G  D A    + M+  G  PD 
Sbjct: 440 CKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDT 499

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
              +S I    K     + L+ + E+ +   +P    YT+++
Sbjct: 500 YTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVI 541



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 66/305 (21%), Positives = 127/305 (41%), Gaps = 4/305 (1%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++    ++ +   ++ LI  + + N ++ A  +  KM   G   D+V+   L+    +AG
Sbjct: 178 LMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAG 237

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            +D A E F  +     QPD  +Y +++    NA + + G+ ++  M   G   S   Y 
Sbjct: 238 RIDEAVELFGEMD----QPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYA 293

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           A++    +    + A ++   M  +   P + +CT ++ AY + G    A    + M   
Sbjct: 294 AVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLR 353

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G KP+     +++  +  +  + KA+ LL ++   G  P   TY +L+        I  A
Sbjct: 354 GCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESA 413

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
            +LL  +   G         +L +   + G   +A      LE +  +     F  +ING
Sbjct: 414 FRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLING 473

Query: 547 LLAGG 551
           L   G
Sbjct: 474 LCKSG 478



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 79/321 (24%), Positives = 130/321 (40%), Gaps = 25/321 (7%)

Query: 176 GEMILPEEPKPITGKCKLITDKILSLEKEEDPSPLLAEWKELLQP-SRIDWINLLDRLRE 234
           GEM L ++ KP T    ++  K+L   KE +   +   W E++      D +     +R 
Sbjct: 523 GEM-LQKDVKPSTVNYTIVIHKLL---KERNYGLVARTWGEMVSSGCNPDVVTYTTSMRA 578

Query: 235 QNTQLYFKVAELVLSEES---FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPD 291
              +     AE VL E S      +   Y+ L+D HA     + A  ILK+M     VP+
Sbjct: 579 YCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPN 638

Query: 292 IVTSTVLV-HMYS----------------KAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
             T  +L+ H+                  KA  L      F+ ++ + F P+   Y+S++
Sbjct: 639 QFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSIL 698

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
             +   G+ +   SLV +M    I  +E+IY AL+  F +      A  +   M    F 
Sbjct: 699 EGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFI 758

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P L S   L+      G  D+A+  F       + PD+     +I    KK   D +  +
Sbjct: 759 PQLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSDISREM 818

Query: 455 LLELEKDGFEPGPATYTVLVD 475
           ++ LE+    P   TY +L +
Sbjct: 819 IIMLERMNCRPSHQTYAMLTE 839



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 71/326 (21%), Positives = 130/326 (39%), Gaps = 7/326 (2%)

Query: 258 RDYSKLIDAHAKENCLED-AERILKKMNENGI-VPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           R ++ L+ AH     L   A R+   M+ +    P   T   ++    +  +L RA    
Sbjct: 118 RPFASLL-AHLSRFALAPLALRLFAHMHRHAPPAPTAPTYNAVIRSLCRRADLARALRYL 176

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G++PD   +NS+I+ Y    Q  +   L D M   G  +    Y  L+    + 
Sbjct: 177 SLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEA 236

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A ++   M     QP +     LV+    A   ++       M  LG +P  R  
Sbjct: 237 GRIDEAVELFGEMD----QPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAY 292

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
           A+++    ++    +A  +L E+ + G  P   T T +++   +   +++A ++L  +  
Sbjct: 293 AAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKL 352

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
            G  P      +L   +   G   KA+  L  + A         +  +I G    G ++ 
Sbjct: 353 RGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIES 412

Query: 556 AQRVHGLMEAQGFAASERLKVALISS 581
           A R+  LME  G  A +    ALI++
Sbjct: 413 AFRLLRLMEGDGLIADQYTYNALINA 438



 Score = 39.3 bits (90), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 55/283 (19%), Positives = 106/283 (37%), Gaps = 28/283 (9%)

Query: 218 LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           ++P+ + + +L++ L +     + +K  E ++S      +   YS  I+   K    ++ 
Sbjct: 460 IKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSA-GCTPDTYTYSSFIEHLCKMKGSQEG 518

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
              + +M +  + P  V  T+++H   K  N       +  + S G  PD   Y + + A
Sbjct: 519 LSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRA 578

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           Y   G+     +++  M  +G+      Y  L+   A  G                   T
Sbjct: 579 YCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQ------------------T 620

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI----AAYGKKNLLDKAL 452
             + ++L +    A  P+Q    F Y I L H    R    ++    A   K   L    
Sbjct: 621 DHAVSILKQMTSVASVPNQ----FTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVF 676

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            L   ++K+ F P   TY+ +++         EA  L+  + E
Sbjct: 677 GLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKE 719


>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
          Length = 1167

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/367 (22%), Positives = 163/367 (44%), Gaps = 10/367 (2%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSE---ESFQTNVRDYSKLIDAHAKENCLE 274
           +QP++I + NL+  L +         A L+L +   +S + +   Y+ +I+ H + +  +
Sbjct: 253 VQPNKITYDNLVRGLCKMGQ---MDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKK 309

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           DA R+L +M   GI P++ T ++++H   ++G  ++A +  E + + G +P+  VY  +I
Sbjct: 310 DAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLI 369

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
             Y   G   L   + D M    +      Y +L+   ++ G V  + +    M+     
Sbjct: 370 SGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLL 429

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P   + + L+  Y + GD + A      M+  G KP+D     ++ +Y K + ++K  + 
Sbjct: 430 PNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSST 489

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
              +   G       Y +L+  L     +  A ++L +I + G  P   +  SL     +
Sbjct: 490 FKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCK 549

Query: 515 AGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572
               +KA   L   E  K+ + P+   +  +I+GL   G +  A+ V   + A+G   + 
Sbjct: 550 TADREKAFGILD--EMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNC 607

Query: 573 RLKVALI 579
               +LI
Sbjct: 608 VTYTSLI 614



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 149/343 (43%), Gaps = 2/343 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +S    + NV  Y+ LID   +E   ++A +++K+M   G+ P+ +T   LV    K G 
Sbjct: 213 MSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQ 272

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +DRA    + +     +PD   YN +I  +      K    L+  M  +GI  +   Y  
Sbjct: 273 MDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSI 332

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++    Q G+   A  +   M  +  +P       L+  Y + G+   A   FD M ++ 
Sbjct: 333 MIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVN 392

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD  C  S+I    K   ++++     ++++ G  P   TY+ L+    +   +  AE
Sbjct: 393 VLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAE 452

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
           QL+ ++ + G  P   I + L + Y ++   +K       +  +   +    +  +I+ L
Sbjct: 453 QLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNL 512

Query: 548 LAGGFLQDAQRVHGLMEAQGFAASERLKVALIS--SQTFNRQR 588
            + G ++ A RV   +E  G      +  +LIS   +T +R++
Sbjct: 513 SSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREK 555



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 155/354 (43%), Gaps = 5/354 (1%)

Query: 228 LLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENG 287
           L D LR     L +KV E ++       +V  YS LI+A+ K    + A+++L +M E G
Sbjct: 89  LKDLLRADAMALLWKVREFMVGA-GISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERG 147

Query: 288 IVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGM 347
              + VT  VL+    ++G ++ A    + +  +G  PD   Y ++I     + +     
Sbjct: 148 CGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAK 207

Query: 348 SLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAY 407
           +L+D M  + ++ +  +Y  L+  F + G+   A ++   M     QP   +   LV   
Sbjct: 208 ALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGL 267

Query: 408 GQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGP 467
            + G  D+A      M+R  H+PD      +I  + + +    A  LL E+E  G  P  
Sbjct: 268 CKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNV 327

Query: 468 ATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGF 527
            TY++++  L +     +A  LL +++  G  P   +   L   Y R G    A +   F
Sbjct: 328 YTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEI--F 385

Query: 528 LEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
            +  K  + PD   +  +I GL   G ++++ +    M+ +G   +E     LI
Sbjct: 386 DKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLI 439



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 72/355 (20%), Positives = 158/355 (44%), Gaps = 7/355 (1%)

Query: 218 LQPSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L+P+   +  L+    RE N  L  ++ +  +++ +   ++  Y+ LI   +K   +E++
Sbjct: 358 LKPNAFVYAPLISGYCREGNVSLACEIFD-KMTKVNVLPDLYCYNSLIFGLSKVGRVEES 416

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
            +   +M E G++P+  T + L+H Y K G+L+ A++  + +   G +P+  +Y  ++ +
Sbjct: 417 TKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLES 476

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           Y  +   +   S    M+  G+     IY  L+ + +  G++  A ++ + +      P 
Sbjct: 477 YFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPD 536

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           +   + L+    +  D ++A    D M + G  P+  C  ++I    K   +  A N+  
Sbjct: 537 VHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFN 596

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
            +   G  P   TYT L+D   ++  I+ A  L  ++   G  P   +   L    + AG
Sbjct: 597 SILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAG 656

Query: 517 IEKKALQAL--GFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
             ++A+  +   FL   +       F  +++G    G +Q+  ++  ++  +G  
Sbjct: 657 DLEQAMFLIEEMFL---RGHASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLV 708



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/312 (21%), Positives = 132/312 (42%), Gaps = 1/312 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E     N   YS LI  + K   LE AE+++++M + G+ P+ V    L+  Y K+ +
Sbjct: 423 MQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDD 482

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +++    F+S+   G   D ++Y  +I    ++G  +    ++  +  +G      +Y +
Sbjct: 483 IEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSS 542

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    +  D   A  I + M  +   P +     L++   ++GD   AR+ F+ ++  G
Sbjct: 543 LISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKG 602

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P+     S+I    K   +  A  L  E+   G  P    Y+VL         + +A 
Sbjct: 603 LVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAM 662

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
            L+ ++   G A       +L D + + G  ++ L+ L  +  +         E II+GL
Sbjct: 663 FLIEEMFLRGHASISSFN-NLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGL 721

Query: 548 LAGGFLQDAQRV 559
              G L +   +
Sbjct: 722 SEAGKLSEVHTI 733



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 131/321 (40%), Gaps = 37/321 (11%)

Query: 187 ITGKCKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAEL 246
           I+G CK       + ++E+    L    K+ + P+ + +  L+D L +     Y +    
Sbjct: 544 ISGLCK-------TADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFN 596

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
            +  +    N   Y+ LID   K   + +A  +  +M   GI PD    +VL    S AG
Sbjct: 597 SILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAG 656

Query: 307 NLDRAKEAFES--LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
           +L++A    E   LR H        +N+++  +   G+ +  + L+ +++  G+      
Sbjct: 657 DLEQAMFLIEEMFLRGHA---SISSFNNLVDGFCKRGKMQETLKLLHVIMGRGL------ 707

Query: 365 YLALLRSFAQCGDVRGAGQITNIMR-IEEFQPTLESCTLLVEAYGQAGDPDQAR---SNF 420
                        V  A  I NI+  + E     E  T+ VE   Q      AR   S F
Sbjct: 708 -------------VPNALTIENIISGLSEAGKLSEVHTIFVE-LQQKTSESAARHFSSLF 753

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
             MI  G  P D     MI  + K+  LDKAL L   +       G ++Y  +VD L R 
Sbjct: 754 MDMINQGKIPLD-VVDDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNLCRK 812

Query: 481 QLINEAEQLLGKISELGEAPP 501
             ++EA  LL ++ + G   P
Sbjct: 813 GKLSEALNLLKEMDKRGNLQP 833



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/255 (20%), Positives = 98/255 (38%), Gaps = 35/255 (13%)

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           VLV  Y K+G +  A E    +R  G  P  +  N+++   + A    L   + + M+ +
Sbjct: 52  VLVDTYKKSGRVQDAAEVVLMMRDRGLAPSIRCCNALLKDLLRADAMALLWKVREFMVGA 111

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
           GI                                    P + + + L+EAY +  + D A
Sbjct: 112 GI-----------------------------------SPDVYTYSTLIEAYCKVREFDTA 136

Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476
           +     M   G   +      +IA   +   +++A     ++E  G  P   TY  L++ 
Sbjct: 137 KKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALING 196

Query: 477 LGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG 536
           L + +  NEA+ LL ++S     P   +  +L D + R G   +A + +  + A   Q  
Sbjct: 197 LCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPN 256

Query: 537 PDDFERIINGLLAGG 551
              ++ ++ GL   G
Sbjct: 257 KITYDNLVRGLCKMG 271


>gi|410109905|gb|AFV61032.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           rugosa]
          Length = 414

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 117/261 (44%), Gaps = 6/261 (2%)

Query: 218 LQPSRIDWINLLD---RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           L+PS + +  L++   RL + +     K A L       Q +V  YS LI+   KE+  +
Sbjct: 156 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLA---SGVQPDVYTYSVLINGXCKESKXD 212

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           DA  +  +M   G+VP+ V  T L+  + K G +D A E ++ + S    PD   YN++I
Sbjct: 213 DANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLI 272

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
                 G  K    L+D M   G++  +  Y  L+    + GD+  A +    M  E  +
Sbjct: 273 YGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLIDGCCKEGDLDSAFEHXKRMIQENXR 332

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
                 T L+      G    A      M+ +G KPD R    +I  + KK  + K   L
Sbjct: 333 LDEVXYTALISGLCXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKL 392

Query: 455 LLELEKDGFEPGPATYTVLVD 475
           L E+++DG  P   TY VL++
Sbjct: 393 LKEMQRDGHVPSVVTYNVLMN 413



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 85/191 (44%)

Query: 285 ENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPK 344
           E G    +    +L+H + K G++  A+  F+++   G +P    YN+++  Y+  G   
Sbjct: 118 ECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 177

Query: 345 LGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
            G  L   M+ SG++     Y  L+    +      A ++ + M ++   P     T L+
Sbjct: 178 EGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLI 237

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
           + + + G  D A   +  M+     PD     ++I    KK  L +A +L+ E+   G +
Sbjct: 238 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLK 297

Query: 465 PGPATYTVLVD 475
           P   TYT L+D
Sbjct: 298 PDKITYTTLID 308



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 65/328 (19%), Positives = 133/328 (40%), Gaps = 2/328 (0%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGI-VPDIVTSTVLVHMYSKAGNLDRAK 312
           ++++  +S LI A+ +   L DA    +   E+   VP      VL H+  K        
Sbjct: 52  RSDJYVFSGLITAYLESGFLRDAIECYRLTXEHKFWVPFDTCRKVLEHL-MKLKYFKLVW 110

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
             +E +   G+      +N ++  +   G  +J  S+ D +   G+  S   Y  L+  +
Sbjct: 111 GFYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGY 170

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + GD+    ++ + M     QP + + ++L+    +    D A   FD M+  G  P+ 
Sbjct: 171 IRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNX 230

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               ++I  + K   +D A+ +  ++      P   TY  L+  L +   + +A  L+ +
Sbjct: 231 VXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDE 290

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
           +S  G  P      +L D   + G    A +    +  +  ++    +  +I+GL   G 
Sbjct: 291 MSXKGLKPDKITYTTLIDGCCKEGDLDSAFEHXKRMIQENXRLDEVXYTALISGLCXEGR 350

Query: 553 LQDAQRVHGLMEAQGFAASERLKVALIS 580
             DA+++   M + G     R    +I+
Sbjct: 351 SVDAEKMLREMLSVGLKPDARTYTMIIN 378



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 89/190 (46%), Gaps = 2/190 (1%)

Query: 218 LQPSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L P+ + +  L+D   +     L  ++ + +LS+ S   ++  Y+ LI    K+  L+ A
Sbjct: 226 LVPNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQ-SLSPDLITYNTLIYGLCKKGDLKQA 284

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
             ++ +M+  G+ PD +T T L+    K G+LD A E  + +     + D+  Y ++I  
Sbjct: 285 HHLIDEMSXKGLKPDKITYTTLIDGCCKEGDLDSAFEHXKRMIQENXRLDEVXYTALISG 344

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
               G+      ++  M++ G++     Y  ++  F + GDV    ++   M+ +   P+
Sbjct: 345 LCXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPS 404

Query: 397 LESCTLLVEA 406
           + +  +L+  
Sbjct: 405 VVTYNVLMNG 414


>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Vitis vinifera]
          Length = 898

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 142/317 (44%), Gaps = 18/317 (5%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI +  K    ED  +I K+M   G  PD+      +    KAG  ++ +  F  + 
Sbjct: 512 YTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREIN 571

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           +HGF PD + Y+ +I   V AG       L   M   G       Y A++  F + G V 
Sbjct: 572 AHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVN 631

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A Q+   M+++   PT+ +   +++   +    D+A   F+     G K +    +S+I
Sbjct: 632 KAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLI 691

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             +GK   +D+A  ++ EL + G  P   T+  L+D L + + INEA      + +L + 
Sbjct: 692 DGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDL-KC 750

Query: 500 PPFKIQVS-----LCDM--YARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAG 550
           PP +I  S     LC +  + +A +  + +Q LG        + P+   +  +I+GL   
Sbjct: 751 PPNQITYSILINGLCRVRKFNKAFVFWQEMQKLG--------LKPNTITYTTMISGLAKA 802

Query: 551 GFLQDAQRVHGLMEAQG 567
           G + +A  +    +A G
Sbjct: 803 GNILEASGLFSRFKANG 819



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 153/347 (44%), Gaps = 11/347 (3%)

Query: 226 INLLDRLREQNTQL-YFKVAELVLSEESFQTNVRD-YSKLIDAHAKENCLEDAERILKKM 283
           I +L RL++ NT + YF+ AE    +++ + +  + Y+ L+   A+    +  ERIL++M
Sbjct: 96  IGVLKRLKDANTAVNYFQWAE----KQTEKVHCPEAYNSLLMVMARNTEFDHLERILEEM 151

Query: 284 NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343
           + +G  P    S  LV    K+  L  A +  +++R   F+P    Y  +I A     +P
Sbjct: 152 SLSGFGPSSNISIELVANCVKSRKLREAFDIIQTMRKFKFRPAFSAYTILIGALSEVREP 211

Query: 344 KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403
              + L   M   G E +  ++  L+R FA+ G V  A  + + M+       +    + 
Sbjct: 212 DPMLILFHQMQELGYEVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLDADIVLYNVC 271

Query: 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGF 463
           ++ +G+AG  D +   F  M   G  PDD    SMI    K N LD+A+ L  +LE++  
Sbjct: 272 IDCFGKAGKVDMSWKFFHEMKSHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRK 331

Query: 464 EPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
            P    Y  ++   G     +EA  LL +    G  P     ++   +    G +++  +
Sbjct: 332 VPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSV---IAYNCILTCLGKKRRVEE 388

Query: 524 ALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
           AL   E  K    P+   +  +I+ L   G L  A  +   ME  G 
Sbjct: 389 ALRIFEEMKRDAVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGL 435



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 111/259 (42%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ LID   +E  L  A  I   M   G+ P+++T  +++    KA  L+ A   F
Sbjct: 403 NVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIF 462

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E +      P+   ++S+I      G+     SL + M+  G      +Y +L+RSF +C
Sbjct: 463 EGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKC 522

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G      +I   M      P L      ++   +AG+ ++ R+ F  +   G  PD R  
Sbjct: 523 GRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSY 582

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
           + +I    K  L ++   L   +++ G       Y  ++D   +   +N+A QLL ++  
Sbjct: 583 SILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKV 642

Query: 496 LGEAPPFKIQVSLCDMYAR 514
            G  P      S+ D  A+
Sbjct: 643 KGHPPTVVTYGSVIDGLAK 661



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 119/269 (44%), Gaps = 1/269 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +   S   ++  Y+  ID   K   ++ + +   +M  +G++PD VT T ++ +  KA  
Sbjct: 256 MKSNSLDADIVLYNVCIDCFGKAGKVDMSWKFFHEMKSHGLMPDDVTYTSMIGVLCKANR 315

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           LD A E FE L  +   P    YN+MIM Y +AG+      L++     G   S   Y  
Sbjct: 316 LDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNC 375

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           +L    +   V  A +I   M+  +  P + +  +L++   + G  + A    D M R G
Sbjct: 376 ILTCLGKKRRVEEALRIFEEMK-RDAVPNVPTYNILIDMLCREGKLNAALEIRDDMERAG 434

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P+      MI    K   L++A ++   ++     P   T++ L+D LG+   +++A 
Sbjct: 435 LFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAY 494

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAG 516
            L  K+ + G  P   +  SL   + + G
Sbjct: 495 SLYEKMLDCGHVPGAIVYTSLIRSFFKCG 523



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 113/265 (42%), Gaps = 8/265 (3%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV   + +ID   K   LE+A  I + M++    P+ VT + L+    K G +D A   +
Sbjct: 438 NVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLY 497

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E +   G  P   VY S+I ++   G+ + G  +   M+ +G        L L+ ++  C
Sbjct: 498 EKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPD----LTLINTYMDC 553

Query: 376 ----GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
               G+      +   +    F P   S ++L+    +AG  ++    F  M   G   D
Sbjct: 554 VFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLD 613

Query: 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
                ++I  + K   ++KA  LL E++  G  P   TY  ++D L ++  ++EA  L  
Sbjct: 614 THAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFE 673

Query: 492 KISELGEAPPFKIQVSLCDMYARAG 516
           +    G      +  SL D + + G
Sbjct: 674 EAKSNGIKLNVVVYSSLIDGFGKVG 698



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/253 (22%), Positives = 105/253 (41%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           ++   F  + R YS LI    K     +   +   M E G V D      ++  + K+G 
Sbjct: 570 INAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGK 629

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +++A +  E ++  G  P    Y S+I       +      L +   ++GI+ +  +Y +
Sbjct: 630 VNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSS 689

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+  F + G +  A  I   +  +   P + +   L++A  +A + ++A   F  M  L 
Sbjct: 690 LIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLK 749

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P+    + +I    +    +KA     E++K G +P   TYT ++  L +   I EA 
Sbjct: 750 CPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEAS 809

Query: 488 QLLGKISELGEAP 500
            L  +    G  P
Sbjct: 810 GLFSRFKANGGIP 822



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 62/294 (21%), Positives = 124/294 (42%), Gaps = 1/294 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E+    +   Y+ +ID   K   +  A ++L++M   G  P +VT   ++   +K   
Sbjct: 605 MKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDR 664

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           LD A   FE  +S+G + +  VY+S+I  +   G+      +++ ++  G+  +   +  
Sbjct: 665 LDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNC 724

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           LL +  +  ++  A      M+  +  P   + ++L+    +    ++A   +  M +LG
Sbjct: 725 LLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLG 784

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            KP+     +MI+   K   + +A  L    + +G  P  A+Y  +++ L       +A 
Sbjct: 785 LKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIEGLSSANKAMDAY 844

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARA-GIEKKALQALGFLEAKKEQMGPDDF 540
            L  +    G     K  V L D   +A  +E+ A+      E  K Q     F
Sbjct: 845 ALFEETRLKGCNIHTKTCVVLLDALHKAECLEQAAIVGAVLKETAKSQHASRSF 898



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 61/323 (18%), Positives = 125/323 (38%), Gaps = 36/323 (11%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +I  +      ++A  +L++    G +P ++    ++    K   ++ A   FE ++
Sbjct: 338 YNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMK 397

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
                P+   YN +I      G+    + + D M  +G+  +      ++    +   + 
Sbjct: 398 RDAV-PNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLE 456

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  I   M  +   P   + + L++  G+ G  D A S ++ M+  GH P      S+I
Sbjct: 457 EACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLI 516

Query: 440 AAY---GKK-------------------NLLDKALN-------------LLLELEKDGFE 464
            ++   G+K                    L++  ++             L  E+   GF 
Sbjct: 517 RSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFI 576

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQA 524
           P   +Y++L+  L +  L NE  +L   + E G         ++ D + ++G   KA Q 
Sbjct: 577 PDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQL 636

Query: 525 LGFLEAKKEQMGPDDFERIINGL 547
           L  ++ K        +  +I+GL
Sbjct: 637 LEEMKVKGHPPTVVTYGSVIDGL 659


>gi|224114285|ref|XP_002316718.1| predicted protein [Populus trichocarpa]
 gi|222859783|gb|EEE97330.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/309 (22%), Positives = 145/309 (46%), Gaps = 2/309 (0%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           FQ +   YS ++D++ KE  ++ A+ I+ +M   G +PD+VT T +++ +S+AG + +A+
Sbjct: 289 FQVDKVGYSAIVDSYCKEGRMDQAKEIVNEMFTRGCIPDVVTYTAIINGFSQAGEVGQAR 348

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           +  + +  HG +P+   Y + +      G       ++          +   Y  ++  F
Sbjct: 349 KMLQQMYKHGCKPNTVSYTAFLKGLCQKGNSSEAREMMKASEEQWWTPNAITYSVVMHGF 408

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + G +  A  +   M  + F PT     LL+++  + G  D+A+   +  + +G   + 
Sbjct: 409 RREGKLSDACDVVREMIGKGFFPTPVEINLLLQSLCRIGRVDEAKKFMEECLNMGCAVNA 468

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               ++I  + +++ ++ AL+LL ++      P   TYT ++D LG+   I EA +L  K
Sbjct: 469 VNFTTVIHRFCQQDDIEAALSLLDDMYLSNKHPDAVTYTTIIDALGKKGRIEEATELTLK 528

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
           + + G  P      ++   Y + G  +  L  L  +  ++E      F ++I  L   G 
Sbjct: 529 MLKKGIDPTPVTYRTVIHRYGQIGRVEDLLNLLDKMLTRQE--CRTAFNQVIEKLCTFGN 586

Query: 553 LQDAQRVHG 561
           L+ A ++ G
Sbjct: 587 LEAADKLLG 595



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 103/221 (46%)

Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338
           +++KM +  ++ D VT   L+HM  K  + D A +     +  GFQ DK  Y++++ +Y 
Sbjct: 245 VIEKMEDTKLLADQVTYNTLIHMLCKHQHADEALQFLREAQKRGFQVDKVGYSAIVDSYC 304

Query: 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398
             G+      +V+ M T G       Y A++  F+Q G+V  A ++   M     +P   
Sbjct: 305 KEGRMDQAKEIVNEMFTRGCIPDVVTYTAIINGFSQAGEVGQARKMLQQMYKHGCKPNTV 364

Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
           S T  ++   Q G+  +AR            P+    + ++  + ++  L  A +++ E+
Sbjct: 365 SYTAFLKGLCQKGNSSEAREMMKASEEQWWTPNAITYSVVMHGFRREGKLSDACDVVREM 424

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
              GF P P    +L+  L R+  ++EA++ + +   +G A
Sbjct: 425 IGKGFFPTPVEINLLLQSLCRIGRVDEAKKFMEECLNMGCA 465



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 58/316 (18%), Positives = 131/316 (41%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
            Q   +D+  ++ ++++   L +A ++L  M + GI P+++     +H+   A  L++A 
Sbjct: 114 IQRTPQDFCCVMVSYSRAGKLRNAMQVLTMMQKAGIEPNLLVCNTAIHVLVMANMLEKAL 173

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
              E ++  G  P+   YN +I  Y +  + +  M L+  M   G    +  Y  ++   
Sbjct: 174 RFLERMQLLGIMPNVVTYNCLIKGYCDLHRVEDAMELISEMPLKGCSPDKVSYYTVMGFL 233

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            +   +R    +   M   +      +   L+    +    D+A        + G + D 
Sbjct: 234 CKNRRIREVMDVIEKMEDTKLLADQVTYNTLIHMLCKHQHADEALQFLREAQKRGFQVDK 293

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
              ++++ +Y K+  +D+A  ++ E+   G  P   TYT +++   +   + +A ++L +
Sbjct: 294 VGYSAIVDSYCKEGRMDQAKEIVNEMFTRGCIPDVVTYTAIINGFSQAGEVGQARKMLQQ 353

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
           + + G  P      +      + G   +A + +   E +        +  +++G    G 
Sbjct: 354 MYKHGCKPNTVSYTAFLKGLCQKGNSSEAREMMKASEEQWWTPNAITYSVVMHGFRREGK 413

Query: 553 LQDAQRVHGLMEAQGF 568
           L DA  V   M  +GF
Sbjct: 414 LSDACDVVREMIGKGF 429



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 66/325 (20%), Positives = 136/325 (41%), Gaps = 9/325 (2%)

Query: 257 VRDYSKLIDAHAKENC-LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           VR+  +LI+  +  N  LE   R L +    G+ P +V + +L    S++         F
Sbjct: 20  VREICRLIECRSAWNHKLEGKMRHLLR----GLKPRLVCAVLL----SQSDERVALDFFF 71

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
            S R   ++ D  VY  M+         +    ++ +M+  GI+R+ + +  ++ S+++ 
Sbjct: 72  WSDRQWRYRHDPIVYCVMLDVLSKTKLCQGARRVLRLMVRRGIQRTPQDFCCVMVSYSRA 131

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +R A Q+  +M+    +P L  C   +     A   ++A    + M  LG  P+    
Sbjct: 132 GKLRNAMQVLTMMQKAGIEPNLLVCNTAIHVLVMANMLEKALRFLERMQLLGIMPNVVTY 191

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +I  Y   + ++ A+ L+ E+   G  P   +Y  ++ +L + + I E   ++ K+ +
Sbjct: 192 NCLIKGYCDLHRVEDAMELISEMPLKGCSPDKVSYYTVMGFLCKNRRIREVMDVIEKMED 251

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
                      +L  M  +     +ALQ L   + +  Q+    +  I++     G +  
Sbjct: 252 TKLLADQVTYNTLIHMLCKHQHADEALQFLREAQKRGFQVDKVGYSAIVDSYCKEGRMDQ 311

Query: 556 AQRVHGLMEAQGFAASERLKVALIS 580
           A+ +   M  +G         A+I+
Sbjct: 312 AKEIVNEMFTRGCIPDVVTYTAIIN 336



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 77/177 (43%), Gaps = 1/177 (0%)

Query: 249 SEESFQT-NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           SEE + T N   YS ++    +E  L DA  ++++M   G  P  V   +L+    + G 
Sbjct: 389 SEEQWWTPNAITYSVVMHGFRREGKLSDACDVVREMIGKGFFPTPVEINLLLQSLCRIGR 448

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D AK+  E   + G   +   + ++I  +      +  +SL+D M  S        Y  
Sbjct: 449 VDEAKKFMEECLNMGCAVNAVNFTTVIHRFCQQDDIEAALSLLDDMYLSNKHPDAVTYTT 508

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
           ++ +  + G +  A ++T  M  +   PT  +   ++  YGQ G  +   +  D M+
Sbjct: 509 IIDALGKKGRIEEATELTLKMLKKGIDPTPVTYRTVIHRYGQIGRVEDLLNLLDKML 565


>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
 gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
          Length = 608

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/264 (23%), Positives = 126/264 (47%), Gaps = 2/264 (0%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           + P  +    L+D L ++      ++    ++E+  + N+  Y+ L+D +  +  + +A+
Sbjct: 294 VMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAK 353

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
           ++ + M   G  P + +  +L++ + K+  +D AK     +      PD   Y++++   
Sbjct: 354 KVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGL 413

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
              G+PK  +++   M + G+  +   Y  LL  F + G +  A ++   M+ ++ +P +
Sbjct: 414 CQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNI 473

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
              T+L+E    AG  + A+  F  +   G +P  R    MI    K+ L D+A +L  +
Sbjct: 474 VHHTILIEGMFIAGKLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEAYDLFRK 533

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQ 481
           +E DGF P   +Y V++   G LQ
Sbjct: 534 MEDDGFLPNSCSYNVMIQ--GFLQ 555



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/324 (23%), Positives = 131/324 (40%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ +I+   K      A  + KKM +NG  PD+VT   ++    K   ++ A E  
Sbjct: 192 NVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFL 251

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G  P+   YN M+  +   GQ      L   M+   +         L+    + 
Sbjct: 252 SEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKE 311

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G V  A  +   M  +  +P + +   L++ Y      ++A+  F+ MIR G  P     
Sbjct: 312 GMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSY 371

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +I  + K   +D+A +LL E+      P   TY+ L+  L +     EA  +  ++  
Sbjct: 372 NILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCS 431

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
            G  P       L D + + G   +AL+ L  ++ KK +        +I G+   G L+ 
Sbjct: 432 YGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTILIEGMFIAGKLEV 491

Query: 556 AQRVHGLMEAQGFAASERLKVALI 579
           A+ +   + A G   + R    +I
Sbjct: 492 AKELFSKLFADGIRPTIRTYTVMI 515



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 78/351 (22%), Positives = 149/351 (42%), Gaps = 2/351 (0%)

Query: 219 QPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           +P+ I +  +++ L +  NT +   V +  + +   + +V  Y+ +ID+  K+  + DA 
Sbjct: 190 EPNVISYNTIINGLCKTGNTSMAVDVFK-KMEQNGCKPDVVTYNTIIDSLCKDRLVNDAM 248

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
             L +M + GI P++ T   +VH +   G L+ A   F+ +      PD      ++   
Sbjct: 249 EFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGL 308

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
              G       + + M   G+E +   Y AL+  +     +  A ++  IM  +   P +
Sbjct: 309 CKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGV 368

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
            S  +L+  + ++   D+A+S    M      PD    ++++    +     +ALN+  E
Sbjct: 369 HSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKE 428

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI 517
           +   G  P   TY++L+D   +   ++EA +LL  + E    P       L +    AG 
Sbjct: 429 MCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTILIEGMFIAGK 488

Query: 518 EKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
            + A +    L A   +     +  +I GLL  G   +A  +   ME  GF
Sbjct: 489 LEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGF 539



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 72/318 (22%), Positives = 134/318 (42%), Gaps = 12/318 (3%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV   + LI+   + N ++ A  IL KM + GI P   T   L++     G +  A E F
Sbjct: 122 NVYSLNVLINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVELF 181

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G +P+   YN++I      G   + + +   M  +G +     Y  ++ S  + 
Sbjct: 182 NEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKD 241

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
             V  A +  + M      P + +   +V  +   G  ++A   F  M+     PD    
Sbjct: 242 RLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTL 301

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             ++    K+ ++ +A  +   + + G EP  +TY  L+D     +L+NEA+++   +  
Sbjct: 302 TILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIR 361

Query: 496 LGEAP---PFKIQVS-LCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLA 549
            G AP    + I ++  C   +R   E K+L A    E   + + PD   +  ++ GL  
Sbjct: 362 QGCAPGVHSYNILINGFCK--SRRMDEAKSLLA----EMYHKALNPDTVTYSTLMQGLCQ 415

Query: 550 GGFLQDAQRVHGLMEAQG 567
            G  ++A  +   M + G
Sbjct: 416 FGRPKEALNIFKEMCSYG 433



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 60/314 (19%), Positives = 118/314 (37%), Gaps = 35/314 (11%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V ++ K + + AK+        +  +M+  G+  ++ +  VL++   +  ++D A    
Sbjct: 87  SVAEFGKFLGSFAKKKQYSTVVSLCNQMDLFGVTHNVYSLNVLINCLCRLNHVDFAVSIL 146

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G  P    +N++I    N G+ K  + L + M+  G E                
Sbjct: 147 GKMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNEMVRRGHE---------------- 190

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
                              P + S   ++    + G+   A   F  M + G KPD    
Sbjct: 191 -------------------PNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTY 231

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I +  K  L++ A+  L E+   G  P   TY  +V     L  +NEA +L  ++  
Sbjct: 232 NTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVG 291

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
               P       L D   + G+  +A      +  K  +     +  +++G      + +
Sbjct: 292 RDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNE 351

Query: 556 AQRVHGLMEAQGFA 569
           A++V  +M  QG A
Sbjct: 352 AKKVFEIMIRQGCA 365



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 101/238 (42%), Gaps = 9/238 (3%)

Query: 177 EMILPEEPKPITGKCKLITDKILSLEKEEDPSPLLAE-WKELLQPSRIDWINLLDRL--- 232
           E+++ +   P      ++ +      + ++   LLAE + + L P  + +  L+  L   
Sbjct: 357 EIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQF 416

Query: 233 -REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPD 291
            R +     FK     +       N+  YS L+D   K   L++A ++LK M E  + P+
Sbjct: 417 GRPKEALNIFKE----MCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPN 472

Query: 292 IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVD 351
           IV  T+L+     AG L+ AKE F  L + G +P  + Y  MI   +  G       L  
Sbjct: 473 IVHHTILIEGMFIAGKLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEAYDLFR 532

Query: 352 MMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409
            M   G   +   Y  +++ F Q  D   A ++ + M  + F   L +  +L++   Q
Sbjct: 533 KMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMVGKRFSANLSTFQMLLDLESQ 590



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/263 (20%), Positives = 108/263 (41%), Gaps = 4/263 (1%)

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           ++D A  +F  +     +P    +   + ++    Q    +SL + M   G+  +     
Sbjct: 68  SIDDALASFYRMVRMNPRPSVAEFGKFLGSFAKKKQYSTVVSLCNQMDLFGVTHNVYSLN 127

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+    +   V  A  I   M      PT  +   L+      G   +A   F+ M+R 
Sbjct: 128 VLINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNEMVRR 187

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           GH+P+     ++I    K      A+++  ++E++G +P   TY  ++D L + +L+N+A
Sbjct: 188 GHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDA 247

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERII 544
            + L ++ + G  P       +   +   G   +A +   F E     + PD      ++
Sbjct: 248 MEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRL--FKEMVGRDVMPDTVTLTILV 305

Query: 545 NGLLAGGFLQDAQRVHGLMEAQG 567
           +GL   G + +A+ V   M  +G
Sbjct: 306 DGLCKEGMVSEARLVFETMTEKG 328


>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
           and contains a RepB PF|01051 protein and multiple PPR
           PF|01535 repeats [Arabidopsis thaliana]
          Length = 613

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 115/251 (45%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E     NV  +S LIDA  KE  L +AE++  +M +  I PDI T + L++ +     LD
Sbjct: 302 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 361

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            AK  FE + S    P+   YN++I  +  A + + GM L   M   G+  +   Y  L+
Sbjct: 362 EAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLI 421

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
           +   Q GD   A +I   M  +   P + + ++L++   + G  ++A   F+Y+ +   +
Sbjct: 422 QGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKME 481

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD      MI    K   ++   +L   L   G +P    YT ++    R  L  EA+ L
Sbjct: 482 PDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADAL 541

Query: 490 LGKISELGEAP 500
             ++ E G  P
Sbjct: 542 FREMKEDGTLP 552



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 80/369 (21%), Positives = 157/369 (42%), Gaps = 14/369 (3%)

Query: 219 QPSRIDWINLLDRLREQNTQLYFKVAELV-----LSEESFQTNVRDYSKLIDAHAKENCL 273
           QP+ + +  L+  L   N     K +E V     +     Q ++  Y  +++   K   +
Sbjct: 166 QPNTVTFNTLIHGLFLHN-----KASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDI 220

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           + A  +LKKM +  I  D+V  T ++       N++ A   F  + + G +P+   YNS+
Sbjct: 221 DLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSL 280

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           I    N G+      L+  MI   I  +   + AL+ +F + G +  A ++ + M     
Sbjct: 281 IRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI 340

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
            P + + + L+  +      D+A+  F+ MI     P+     ++I  + K   +++ + 
Sbjct: 341 DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGME 400

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
           L  E+ + G      TY  L+  L +    + A+++  K+   G  P       L D   
Sbjct: 401 LFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLC 460

Query: 514 RAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAAS 571
           + G  +KAL    +L+  K +M PD   +  +I G+   G ++D   +   +  +G   +
Sbjct: 461 KYGKLEKALVVFEYLQ--KSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPN 518

Query: 572 ERLKVALIS 580
             +   +IS
Sbjct: 519 VIIYTTMIS 527



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/288 (21%), Positives = 120/288 (41%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           L+DA  +  +M ++  +P IV    L+   +K    D      E +++     D   YN 
Sbjct: 45  LDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNI 104

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I  +    Q  L ++++  M+  G E       +LL  +     +  A  + + M + E
Sbjct: 105 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVME 164

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
           +QP   +   L+          +A +  D M+  G +PD     +++    K+  +D AL
Sbjct: 165 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLAL 224

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
           +LL ++EK   E     YT ++D L   + +N+A  L  ++   G  P      SL    
Sbjct: 225 SLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCL 284

Query: 513 ARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVH 560
              G    A + L  +  +K       F  +I+  +  G L +A++++
Sbjct: 285 CNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLY 332



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 110/254 (43%), Gaps = 41/254 (16%)

Query: 221 SRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERIL 280
           S I+   + DRL E          EL++S++ F  NV  Y+ LI    K   +E+   + 
Sbjct: 349 SLINGFCMHDRLDEAKHMF-----ELMISKDCFP-NVVTYNTLIKGFCKAKRVEEGMELF 402

Query: 281 KKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNA 340
           ++M++ G+V + VT   L+    +AG+ D A++ F+ + S G  PD              
Sbjct: 403 REMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPD-------------- 448

Query: 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
                       +IT         Y  LL    + G +  A  +   ++  + +P + + 
Sbjct: 449 ------------IIT---------YSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTY 487

Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
            +++E   +AG  +     F  +   G KP+     +MI+ + +K L ++A  L  E+++
Sbjct: 488 NIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKE 547

Query: 461 DGFEPGPATYTVLV 474
           DG  P   TY  L+
Sbjct: 548 DGTLPNSGTYNTLI 561



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 81/364 (22%), Positives = 144/364 (39%), Gaps = 60/364 (16%)

Query: 207 PSPLLAEWKELLQP-SRIDWINLLDRL--REQNTQLYFKVAELVLSEESFQTNVRDYSKL 263
           P P + E+ +LL   ++++  +L+  L  R QN ++ +              ++  Y+ L
Sbjct: 60  PLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISY--------------DLYSYNIL 105

Query: 264 IDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGF 323
           I+   + + L  A  +L KM + G  PDIVT + L++ Y     +  A    + +    +
Sbjct: 106 INCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEY 165

Query: 324 QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQ 383
           QP+   +N++I       +    ++L+D M+  G                          
Sbjct: 166 QPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGC------------------------- 200

Query: 384 ITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYG 443
                     QP L +   +V    + GD D A S    M +   + D     ++I A  
Sbjct: 201 ----------QPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALC 250

Query: 444 KKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFK 503
               ++ ALNL  E++  G  P   TY  L+  L      ++A +LL  + E    P   
Sbjct: 251 NYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVV 310

Query: 504 IQVSLCDMYARAG--IEKKALQALGFLEAKKEQMGPDDF--ERIINGLLAGGFLQDAQRV 559
              +L D + + G  +E + L    + E  K  + PD F    +ING      L +A+ +
Sbjct: 311 TFSALIDAFVKEGKLVEAEKL----YDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 366

Query: 560 HGLM 563
             LM
Sbjct: 367 FELM 370


>gi|115473997|ref|NP_001060597.1| Os07g0671200 [Oryza sativa Japonica Group]
 gi|22831126|dbj|BAC15987.1| putative crp1(chloroplast RNA processing 1) protein [Oryza sativa
           Japonica Group]
 gi|113612133|dbj|BAF22511.1| Os07g0671200 [Oryza sativa Japonica Group]
          Length = 551

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 141/342 (41%), Gaps = 43/342 (12%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +     + N   Y+ L+DA+ +E   +    +LK M   GI P + T T+LV   S A +
Sbjct: 169 MPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVMENEGIEPTVGTYTILVDGLSAARD 228

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           + + +  FE ++S     D   Y+S+I AY  AG  +    + D  + +GIE +E  Y A
Sbjct: 229 ITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGA 288

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+  F + G +  A  +   M++                                    G
Sbjct: 289 LINGFCKIGQMEAAEMLVTDMQVR-----------------------------------G 313

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
              +     +MI  Y +KN++DKAL + + +EK G E    TY  L   L R   ++EA+
Sbjct: 314 VGINQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAK 373

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAG--IEKKALQALGFLEAKKEQMGPD--DFERI 543
            LL  + E G  P      +L  ++   G  +E + L    F E       P    +  +
Sbjct: 374 NLLRIMIEKGVRPNHVSYTTLISIHCNEGDMVEARRL----FREMAGNGAEPSLVTYNVM 429

Query: 544 INGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFN 585
           ++G +  G +++A+R    ME +G         AL+     N
Sbjct: 430 MDGYIKKGSIREAERFKNEMEKKGLVPDIYSYAALVHGHCVN 471



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/352 (22%), Positives = 161/352 (45%), Gaps = 6/352 (1%)

Query: 242 KVAEL--VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLV 299
           +VAE+  V+  E  +  V  Y+ L+D  +    +   E + ++M    +  D+   + ++
Sbjct: 196 RVAEMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVI 255

Query: 300 HMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
           + Y +AGN+ RA E F+    +G +P++  Y ++I  +   GQ +    LV  M   G+ 
Sbjct: 256 NAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVG 315

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
            ++ ++  ++  + +   V  A +I  IM     +  + +   L     +A   D+A++ 
Sbjct: 316 INQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNL 375

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
              MI  G +P+     ++I+ +  +  + +A  L  E+  +G EP   TY V++D   +
Sbjct: 376 LRIMIEKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIK 435

Query: 480 LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD- 538
              I EAE+   ++ + G  P      +L   +   G    AL+   F E K+    P+ 
Sbjct: 436 KGSIREAERFKNEMEKKGLVPDIYSYAALVHGHCVNGKVDVALRL--FEEMKQRGSKPNL 493

Query: 539 -DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQ 589
             +  +I+GL   G  ++A +++  M   G    + L  AL+ S   ++++ 
Sbjct: 494 VAYTALISGLAKEGRSEEAFQLYDNMLGDGLTPDDALYSALVGSLHTDKKQN 545



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 86/176 (48%), Gaps = 4/176 (2%)

Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
           S +++V+ Y ++G    AR   D M R G K +  C  S++ AY ++   D+   +L  +
Sbjct: 145 SASVVVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVM 204

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
           E +G EP   TYT+LVD L   + I + E +  ++     +       S+ + Y RAG  
Sbjct: 205 ENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNV 264

Query: 519 KKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572
           ++A +   F E     + P++  +  +ING    G ++ A+ +   M+ +G   ++
Sbjct: 265 RRASEV--FDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQ 318


>gi|449477323|ref|XP_004154991.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g18900-like [Cucumis sativus]
          Length = 874

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 106/215 (49%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  LID HAK   L+ A  + +KM + G+ PD  T +V+++   KAG+L+ A   F  + 
Sbjct: 452 YCTLIDIHAKSGFLDVAMGMYEKMQDAGLTPDTFTYSVMINCLGKAGHLNAAHRLFCRMV 511

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P+   YN MI     A   ++ + L   M  SG E  +  Y  ++     CG + 
Sbjct: 512 DEGCVPNLVTYNIMIALQAKARNYEIALKLYRDMQQSGFEPDKVTYCIVMEVLGHCGFLE 571

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  I   M+ + + P      LLV+ +G++G+  +A   +  M++ G KP+     S++
Sbjct: 572 EAEGIFIEMQKKNWVPDEPVYGLLVDLWGKSGNVQKAWEWYHAMLKAGLKPNVPTCNSLL 631

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
           +A+ + + L  A  LL  +   G +P   TYT+L+
Sbjct: 632 SAFLRVHQLSDAYQLLQSMLTFGLKPSLQTYTLLL 666



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 120/263 (45%), Gaps = 3/263 (1%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           ++  Q NV  Y+++I ++ + N L+DA  + K+M E G  PD VT   L+ +++K+G LD
Sbjct: 407 KDGCQPNVVTYNRIIHSYGRANYLQDAVNVFKQMQEAGCEPDRVTYCTLIDIHAKSGFLD 466

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A   +E ++  G  PD   Y+ MI     AG       L   M+  G   +   Y  ++
Sbjct: 467 VAMGMYEKMQDAGLTPDTFTYSVMINCLGKAGHLNAAHRLFCRMVDEGCVPNLVTYNIMI 526

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
              A+  +   A ++   M+   F+P   +  +++E  G  G  ++A   F  M +    
Sbjct: 527 ALQAKARNYEIALKLYRDMQQSGFEPDKVTYCIVMEVLGHCGFLEEAEGIFIEMQKKNWV 586

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD+     ++  +GK   + KA      + K G +P   T   L+    R+  +++A QL
Sbjct: 587 PDEPVYGLLVDLWGKSGNVQKAWEWYHAMLKAGLKPNVPTCNSLLSAFLRVHQLSDAYQL 646

Query: 490 LGKISELGEAPP---FKIQVSLC 509
           L  +   G  P    + + +S C
Sbjct: 647 LQSMLTFGLKPSLQTYTLLLSCC 669



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/273 (20%), Positives = 119/273 (43%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F+ +   Y+ +I    +        ++L +M ++G  P++VT   ++H Y +A  L  A 
Sbjct: 375 FRHDGHTYTTMIGLLGRAKQFAAINKLLDQMIKDGCQPNVVTYNRIIHSYGRANYLQDAV 434

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
             F+ ++  G +PD+  Y ++I  +  +G   + M + + M  +G+      Y  ++   
Sbjct: 435 NVFKQMQEAGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGLTPDTFTYSVMINCL 494

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + G +  A ++   M  E   P L +  +++    +A + + A   +  M + G +PD 
Sbjct: 495 GKAGHLNAAHRLFCRMVDEGCVPNLVTYNIMIALQAKARNYEIALKLYRDMQQSGFEPDK 554

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
                ++   G    L++A  + +E++K  + P    Y +LVD  G+   + +A +    
Sbjct: 555 VTYCIVMEVLGHCGFLEEAEGIFIEMQKKNWVPDEPVYGLLVDLWGKSGNVQKAWEWYHA 614

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
           + + G  P      SL   + R      A Q L
Sbjct: 615 MLKAGLKPNVPTCNSLLSAFLRVHQLSDAYQLL 647



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 68/310 (21%), Positives = 127/310 (40%), Gaps = 48/310 (15%)

Query: 218 LQPSRIDWINLLD-----RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC 272
            +P R+ +  L+D        +    +Y K+ +  L+ ++F      YS +I+   K   
Sbjct: 445 CEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGLTPDTFT-----YSVMINCLGKAGH 499

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           L  A R+  +M + G VP++VT  +++ + +KA N + A + +  ++  GF+PDK  Y  
Sbjct: 500 LNAAHRLFCRMVDEGCVPNLVTYNIMIALQAKARNYEIALKLYRDMQQSGFEPDKVTYCI 559

Query: 333 MIMAYVNAG--------------------QPKLGMSLVDMMITSG-IERSEEIYLALLRS 371
           ++    + G                    +P  G+ LVD+   SG ++++ E Y A+L++
Sbjct: 560 VMEVLGHCGFLEEAEGIFIEMQKKNWVPDEPVYGL-LVDLWGKSGNVQKAWEWYHAMLKA 618

Query: 372 ---------------FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
                          F +   +  A Q+   M     +P+L++ TLL+     A   D  
Sbjct: 619 GLKPNVPTCNSLLSAFLRVHQLSDAYQLLQSMLTFGLKPSLQTYTLLLSCCTDAQTNDMG 678

Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476
               + M   GH       +   A    +N+ D     L  +  +  E        +VD+
Sbjct: 679 FC-CELMQVTGHPAHTFLVSLPSAGPNGQNVRDHMSKFLDLMHSEDRESKRGLVDAVVDF 737

Query: 477 LGRLQLINEA 486
           L +  L  EA
Sbjct: 738 LHKSGLKEEA 747



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 58/128 (45%)

Query: 389 RIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLL 448
           R+  F+    + T ++   G+A          D MI+ G +P+      +I +YG+ N L
Sbjct: 371 RLPRFRHDGHTYTTMIGLLGRAKQFAAINKLLDQMIKDGCQPNVVTYNRIIHSYGRANYL 430

Query: 449 DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSL 508
             A+N+  ++++ G EP   TY  L+D   +   ++ A  +  K+ + G  P       +
Sbjct: 431 QDAVNVFKQMQEAGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGLTPDTFTYSVM 490

Query: 509 CDMYARAG 516
            +   +AG
Sbjct: 491 INCLGKAG 498


>gi|449440748|ref|XP_004138146.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Cucumis sativus]
          Length = 874

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 106/215 (49%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  LID HAK   L+ A  + +KM + G+ PD  T +V+++   KAG+L+ A   F  + 
Sbjct: 452 YCTLIDIHAKSGFLDVAMGMYEKMQDAGLTPDTFTYSVMINCLGKAGHLNAAHRLFCRMV 511

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P+   YN MI     A   ++ + L   M  SG E  +  Y  ++     CG + 
Sbjct: 512 DEGCVPNLVTYNIMIALQAKARNYEIALKLYRDMQQSGFEPDKVTYCIVMEVLGHCGFLE 571

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  I   M+ + + P      LLV+ +G++G+  +A   +  M++ G KP+     S++
Sbjct: 572 EAEGIFIEMQKKNWVPDEPVYGLLVDLWGKSGNVQKAWEWYHAMLKAGLKPNVPTCNSLL 631

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
           +A+ + + L  A  LL  +   G +P   TYT+L+
Sbjct: 632 SAFLRVHQLSDAYQLLQSMLTFGLKPSLQTYTLLL 666



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 120/263 (45%), Gaps = 3/263 (1%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           ++  Q NV  Y+++I ++ + N L+DA  + K+M E G  PD VT   L+ +++K+G LD
Sbjct: 407 KDGCQPNVVTYNRIIHSYGRANYLQDAVNVFKQMQEAGCEPDRVTYCTLIDIHAKSGFLD 466

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A   +E ++  G  PD   Y+ MI     AG       L   M+  G   +   Y  ++
Sbjct: 467 VAMGMYEKMQDAGLTPDTFTYSVMINCLGKAGHLNAAHRLFCRMVDEGCVPNLVTYNIMI 526

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
              A+  +   A ++   M+   F+P   +  +++E  G  G  ++A   F  M +    
Sbjct: 527 ALQAKARNYEIALKLYRDMQQSGFEPDKVTYCIVMEVLGHCGFLEEAEGIFIEMQKKNWV 586

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD+     ++  +GK   + KA      + K G +P   T   L+    R+  +++A QL
Sbjct: 587 PDEPVYGLLVDLWGKSGNVQKAWEWYHAMLKAGLKPNVPTCNSLLSAFLRVHQLSDAYQL 646

Query: 490 LGKISELGEAPP---FKIQVSLC 509
           L  +   G  P    + + +S C
Sbjct: 647 LQSMLTFGLKPSLQTYTLLLSCC 669



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/273 (20%), Positives = 119/273 (43%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F+ +   Y+ +I    +        ++L +M ++G  P++VT   ++H Y +A  L  A 
Sbjct: 375 FRHDGHTYTTMIGLLGRAKQFAAINKLLDQMIKDGCQPNVVTYNRIIHSYGRANYLQDAV 434

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
             F+ ++  G +PD+  Y ++I  +  +G   + M + + M  +G+      Y  ++   
Sbjct: 435 NVFKQMQEAGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGLTPDTFTYSVMINCL 494

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + G +  A ++   M  E   P L +  +++    +A + + A   +  M + G +PD 
Sbjct: 495 GKAGHLNAAHRLFCRMVDEGCVPNLVTYNIMIALQAKARNYEIALKLYRDMQQSGFEPDK 554

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
                ++   G    L++A  + +E++K  + P    Y +LVD  G+   + +A +    
Sbjct: 555 VTYCIVMEVLGHCGFLEEAEGIFIEMQKKNWVPDEPVYGLLVDLWGKSGNVQKAWEWYHA 614

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
           + + G  P      SL   + R      A Q L
Sbjct: 615 MLKAGLKPNVPTCNSLLSAFLRVHQLSDAYQLL 647



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 68/310 (21%), Positives = 127/310 (40%), Gaps = 48/310 (15%)

Query: 218 LQPSRIDWINLLD-----RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC 272
            +P R+ +  L+D        +    +Y K+ +  L+ ++F      YS +I+   K   
Sbjct: 445 CEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGLTPDTFT-----YSVMINCLGKAGH 499

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           L  A R+  +M + G VP++VT  +++ + +KA N + A + +  ++  GF+PDK  Y  
Sbjct: 500 LNAAHRLFCRMVDEGCVPNLVTYNIMIALQAKARNYEIALKLYRDMQQSGFEPDKVTYCI 559

Query: 333 MIMAYVNAG--------------------QPKLGMSLVDMMITSG-IERSEEIYLALLRS 371
           ++    + G                    +P  G+ LVD+   SG ++++ E Y A+L++
Sbjct: 560 VMEVLGHCGFLEEAEGIFIEMQKKNWVPDEPVYGL-LVDLWGKSGNVQKAWEWYHAMLKA 618

Query: 372 ---------------FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
                          F +   +  A Q+   M     +P+L++ TLL+     A   D  
Sbjct: 619 GLKPNVPTCNSLLSAFLRVHQLSDAYQLLQSMLTFGLKPSLQTYTLLLSCCTDAQTNDMG 678

Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476
               + M   GH       +   A    +N+ D     L  +  +  E        +VD+
Sbjct: 679 FC-CELMQVTGHPAHTFLVSLPSAGPNGQNVRDHMSKFLDLMHSEDRESKRGLVDAVVDF 737

Query: 477 LGRLQLINEA 486
           L +  L  EA
Sbjct: 738 LHKSGLKEEA 747



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 58/128 (45%)

Query: 389 RIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLL 448
           R+  F+    + T ++   G+A          D MI+ G +P+      +I +YG+ N L
Sbjct: 371 RLPRFRHDGHTYTTMIGLLGRAKQFAAINKLLDQMIKDGCQPNVVTYNRIIHSYGRANYL 430

Query: 449 DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSL 508
             A+N+  ++++ G EP   TY  L+D   +   ++ A  +  K+ + G  P       +
Sbjct: 431 QDAVNVFKQMQEAGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGLTPDTFTYSVM 490

Query: 509 CDMYARAG 516
            +   +AG
Sbjct: 491 INCLGKAG 498


>gi|356533316|ref|XP_003535211.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like [Glycine max]
          Length = 918

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/331 (22%), Positives = 154/331 (46%), Gaps = 30/331 (9%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
            +++  + +V  Y+ +I A    + ++ A  ++K+M +    P   T   ++H +++AG 
Sbjct: 510 FTKDGLKPDVVLYNNIITAFCGMSNMDRAICMVKQMQKERYRPTTRTFLPIIHGFARAGE 569

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           + RA E F+ +R  G  P    YN++I+  V   +    ++++D M  +G+  +E  Y  
Sbjct: 570 MRRALEIFDMMRRSGCIPTVHTYNALILGLVEKRKMAKAVAILDQMNVAGVGPNEHTYTT 629

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA----------- 416
           L++ +A  GD   A Q  +++R E  +  + +   L+++  ++G    A           
Sbjct: 630 LMQGYASLGDTEKAFQYFSVLRNEGLEIDVYTYEALLKSCCKSGRMQSALAVTKEMSAKN 689

Query: 417 --RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
             R+ F Y I             +I  + ++  + +A +L+ ++ K+G  P   TYT  V
Sbjct: 690 IPRNTFVYNI-------------LIDGWARRGDVWEAADLMQQMRKEGVLPDIHTYTSFV 736

Query: 475 DWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ 534
           +   +   + +A +++ ++   G  P  K   +L + +ARA + +KAL    F E K  +
Sbjct: 737 NACCKAGDMQKATEIIQEMEAFGIKPNLKTYTTLINGWARASMPEKALSC--FEEMKLAE 794

Query: 535 MGPDD--FERIINGLLAGGFLQDAQRVHGLM 563
           + PD   +  ++  LL+      +    GL+
Sbjct: 795 LKPDKAAYHCLMTSLLSRATFAQSYVYSGLL 825



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/311 (21%), Positives = 130/311 (41%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N   Y  +I AH +   ++ AE ++++M   GI   I     ++  Y+  GN ++    F
Sbjct: 378 NAVTYGSIIYAHCQTCNMDRAEALVREMEVQGIDAPIDIYHTMMDGYTMIGNEEKCLIVF 437

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + L+  GF P    Y  +I  Y   G+    + +  MM  SGI+ + + Y  L+  F + 
Sbjct: 438 DRLKECGFSPSVISYGCLINLYTKIGKVSKALQISKMMKMSGIKHNMKTYSMLINGFLKL 497

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
            D   A  +      +  +P +     ++ A+    + D+A      M +  ++P  R  
Sbjct: 498 KDWANAFSVFEDFTKDGLKPDVVLYNNIITAFCGMSNMDRAICMVKQMQKERYRPTTRTF 557

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +I  + +   + +AL +   + + G  P   TY  L+  L   + + +A  +L +++ 
Sbjct: 558 LPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTYNALILGLVEKRKMAKAVAILDQMNV 617

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
            G  P      +L   YA  G  +KA Q    L  +  ++    +E ++      G +Q 
Sbjct: 618 AGVGPNEHTYTTLMQGYASLGDTEKAFQYFSVLRNEGLEIDVYTYEALLKSCCKSGRMQS 677

Query: 556 AQRVHGLMEAQ 566
           A  V   M A+
Sbjct: 678 ALAVTKEMSAK 688



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 141/335 (42%), Gaps = 4/335 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L E  F  +V  Y  LI+ + K   +  A +I K M  +GI  ++ T ++L++ + K  +
Sbjct: 440 LKECGFSPSVISYGCLINLYTKIGKVSKALQISKMMKMSGIKHNMKTYSMLINGFLKLKD 499

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
              A   FE     G +PD  +YN++I A+         + +V  M       +   +L 
Sbjct: 500 WANAFSVFEDFTKDGLKPDVVLYNNIITAFCGMSNMDRAICMVKQMQKERYRPTTRTFLP 559

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++  FA+ G++R A +I ++MR     PT+ +   L+    +     +A +  D M   G
Sbjct: 560 IIHGFARAGEMRRALEIFDMMRRSGCIPTVHTYNALILGLVEKRKMAKAVAILDQMNVAG 619

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P++    +++  Y      +KA      L  +G E    TY  L+    +   +  A 
Sbjct: 620 VGPNEHTYTTLMQGYASLGDTEKAFQYFSVLRNEGLEIDVYTYEALLKSCCKSGRMQSAL 679

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIIN 545
            +  ++S         +   L D +AR G   +A   +   + +KE + PD   +   +N
Sbjct: 680 AVTKEMSAKNIPRNTFVYNILIDGWARRGDVWEAADLMQ--QMRKEGVLPDIHTYTSFVN 737

Query: 546 GLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
                G +Q A  +   MEA G   + +    LI+
Sbjct: 738 ACCKAGDMQKATEIIQEMEAFGIKPNLKTYTTLIN 772



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 107/254 (42%), Gaps = 39/254 (15%)

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           ++V  Y++ G++  A++ FES+++ G +P   VY+S+I AY      +  +  V  M   
Sbjct: 279 LMVKYYARRGDMHHARQTFESMQARGIEPSSHVYSSLIHAYAVGRDMEEALHCVRKMKEE 338

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
           GIE +   Y  ++  FA+ G    A         +E  P+L + T     YG        
Sbjct: 339 GIEMTIVTYSIIVGGFAKMGKADAADHW--FKEAKEKLPSLNAVT-----YG-------- 383

Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476
                               S+I A+ +   +D+A  L+ E+E  G +     Y  ++D 
Sbjct: 384 --------------------SIIYAHCQTCNMDRAEALVREMEVQGIDAPIDIYHTMMD- 422

Query: 477 LGRLQLINEAEQLL--GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ 534
            G   + NE + L+   ++ E G +P       L ++Y + G   KALQ    ++    +
Sbjct: 423 -GYTMIGNEEKCLIVFDRLKECGFSPSVISYGCLINLYTKIGKVSKALQISKMMKMSGIK 481

Query: 535 MGPDDFERIINGLL 548
                +  +ING L
Sbjct: 482 HNMKTYSMLINGFL 495



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/149 (22%), Positives = 66/149 (44%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           VL  E  + +V  Y  L+ +  K   ++ A  + K+M+   I  +     +L+  +++ G
Sbjct: 649 VLRNEGLEIDVYTYEALLKSCCKSGRMQSALAVTKEMSAKNIPRNTFVYNILIDGWARRG 708

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           ++  A +  + +R  G  PD   Y S + A   AG  +    ++  M   GI+ + + Y 
Sbjct: 709 DVWEAADLMQQMRKEGVLPDIHTYTSFVNACCKAGDMQKATEIIQEMEAFGIKPNLKTYT 768

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
            L+  +A+      A      M++ E +P
Sbjct: 769 TLINGWARASMPEKALSCFEEMKLAELKP 797



 Score = 47.4 bits (111), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 57/112 (50%), Gaps = 2/112 (1%)

Query: 384 ITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYG 443
           +T   RI+  +P  +   L+V+ Y + GD   AR  F+ M   G +P     +S+I AY 
Sbjct: 263 VTAFERIK--KPARKEYGLMVKYYARRGDMHHARQTFESMQARGIEPSSHVYSSLIHAYA 320

Query: 444 KKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
               +++AL+ + +++++G E    TY+++V    ++   + A+    +  E
Sbjct: 321 VGRDMEEALHCVRKMKEEGIEMTIVTYSIIVGGFAKMGKADAADHWFKEAKE 372


>gi|414887035|tpg|DAA63049.1| TPA: crs2 associated factor1 [Zea mays]
          Length = 668

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 96/413 (23%), Positives = 173/413 (41%), Gaps = 28/413 (6%)

Query: 197 KILSLEKEEDPSPLLAEWKELLQ--------PSRIDWINLLDRLREQNTQ---------- 238
           ++LSL +E D  P LA +  LL         P       LL  LRE   +          
Sbjct: 176 RLLSLLREHDFLPDLASYSHLLASLLNTRDPPDAALLERLLGDLRESRLEPDAPLFSDLI 235

Query: 239 -LYFKVA------ELVLSEESFQTNVRD--YSKLIDAHAKENCLEDAERILKKMNENG-I 288
             + + A      EL+ S ++     R    + LI A      + +AE +  +    G I
Sbjct: 236 SAFARAALPDAALELLASAQAIGLTPRSNAVTALISALGTAGRVAEAEALFLEFFLAGEI 295

Query: 289 VPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMS 348
            P       L+  Y +  +L  A++  + +   G  PD+  Y+ ++ AY  AG+ +    
Sbjct: 296 KPRTRAYNALLKGYVRIASLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARI 355

Query: 349 LVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYG 408
           L+  M   G++ S  ++  +L  F   GD + A  +   M+    +P      ++++ +G
Sbjct: 356 LLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFG 415

Query: 409 QAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPA 468
           +      A   F+ M   G +PD     ++I A+ K    D+A  L  E+ +    PG  
Sbjct: 416 KYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFEEMRESNCPPGTT 475

Query: 469 TYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFL 528
           TY ++++ LG  +     E +L ++ E G  P      +L D+Y R+G  K+A+  +  +
Sbjct: 476 TYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAM 535

Query: 529 EAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
           +A   +  P  +  ++N     G    A  V   M+A G   S  +  +LI++
Sbjct: 536 KADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMKADGLEVSILVLNSLINA 588



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 110/249 (44%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +ID   K NCL  A     KM E GI PD+VT   L+  + K G  DRA E FE +R
Sbjct: 407 YNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFEEMR 466

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
                P    YN MI         +   +++  M   G+  +   Y  L+  + + G  +
Sbjct: 467 ESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYK 526

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A      M+ +  +P+      LV AY Q G  D A +    M   G +       S+I
Sbjct: 527 EAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMKADGLEVSILVLNSLI 586

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            A+G+   + +A ++L  + ++G  P   TYT L+  L R++  ++   +  ++   G A
Sbjct: 587 NAFGEDRRVVEAFSVLQFMRENGLRPDVITYTTLMKALIRVEQFDKVPVIYEEMITSGCA 646

Query: 500 PPFKIQVSL 508
           P  K +  L
Sbjct: 647 PDRKARAML 655



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/330 (20%), Positives = 147/330 (44%), Gaps = 40/330 (12%)

Query: 245 ELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK 304
           E  L+ E  +   R Y+ L+  + +   L++AE++L +M++ G+ PD  T ++LV  Y++
Sbjct: 288 EFFLAGE-IKPRTRAYNALLKGYVRIASLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTR 346

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
           AG  + A+   + + + G +P   V++ ++  + + G  +   +++  M  SG+      
Sbjct: 347 AGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHF 406

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA-------- 416
           Y  ++ +F +   +  A    N MR E  +P + +   L++A+ + G  D+A        
Sbjct: 407 YNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFEEMR 466

Query: 417 -------RSNFDYMIRL--------------------GHKPDDRCTASMIAAYGKKNLLD 449
                   + ++ MI L                    G  P+     +++  YG+     
Sbjct: 467 ESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYK 526

Query: 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLC 509
           +A++ +  ++ DG +P P  Y  LV+   +  L + A  ++  +   G      +  SL 
Sbjct: 527 EAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMKADGLEVSILVLNSLI 586

Query: 510 DMYARAGIEKKALQALGFLEAKKEQ-MGPD 538
           + +   G +++ ++A   L+  +E  + PD
Sbjct: 587 NAF---GEDRRVVEAFSVLQFMRENGLRPD 613



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 110/226 (48%), Gaps = 4/226 (1%)

Query: 215 KELLQPSRIDWINLLDRLREQNTQLYFKVAELV--LSEESFQTNVRDYSKLIDAHAKENC 272
           +E ++P  + W  L+D         + + AEL   + E +       Y+ +I+   ++  
Sbjct: 432 EEGIEPDVVTWNTLIDA--HCKGGRHDRAAELFEEMRESNCPPGTTTYNIMINLLGEQEH 489

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
            E  E +L +M E G+VP+I+T T LV +Y ++G    A +  E++++ G +P   +Y++
Sbjct: 490 WEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHA 549

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           ++ AY   G     +++V  M   G+E S  +  +L+ +F +   V  A  +   MR   
Sbjct: 550 LVNAYAQRGLADHALNVVKAMKADGLEVSILVLNSLINAFGEDRRVVEAFSVLQFMRENG 609

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
            +P + + T L++A  +    D+    ++ MI  G  PD +  A +
Sbjct: 610 LRPDVITYTTLMKALIRVEQFDKVPVIYEEMITSGCAPDRKARAML 655


>gi|255574572|ref|XP_002528197.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532409|gb|EEF34204.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 642

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 140/317 (44%), Gaps = 7/317 (2%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
            V  Y++ I    K   ++DA R+   M ++G  PD+V    L+++  K G L+   + F
Sbjct: 303 TVFTYTEWIKGLGKAGRVDDAYRVFLDMIKDGCKPDVVLINSLINILGKVGRLEVTLKLF 362

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKL-GMSLVDMMITSGIERSEEIYLALLRSFAQ 374
             + S   +P+   YN++I A      P     S  + M   GI  S   Y  L+  F +
Sbjct: 363 RKMESWQCKPNVVTYNTVIKALFECKAPASEAASWFEKMKGCGIAPSSFTYSILIDGFCK 422

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF-DYMIRLGHKPDDR 433
              +  A  +   M  + F P   +   L+ + G+    + A   F +     GH    R
Sbjct: 423 TNRIEKALLLLEEMDEKGFPPCPAAYCSLINSLGKVKRYEAANELFLELKENCGHS-SAR 481

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
             A MI  +GK   L +A++L  E+EK G +P    Y  L+  + R  +I+EA+ LL  +
Sbjct: 482 VYAVMIKHFGKCGRLSEAVDLFNEMEKLGSKPDVYAYNALMSGMVRAGMIDEAQSLLRTM 541

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGG 551
            E G +P       + +  AR G+  +A++   F + K   + PD   +  ++  L   G
Sbjct: 542 DENGCSPDLNSHNIILNGLARTGVPDRAIEM--FAKMKSSIIKPDAVSYNTVLGCLSHAG 599

Query: 552 FLQDAQRVHGLMEAQGF 568
             ++A ++   M  +GF
Sbjct: 600 LFEEAAKLMREMNLKGF 616



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 76/347 (21%), Positives = 149/347 (42%), Gaps = 41/347 (11%)

Query: 260 YSKLIDAHAKENCLEDAERILKKM-NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318
           Y+ +I    +E  LE    I  +M N+    PD VT + L+  + K G+ D A   F+ +
Sbjct: 201 YNSMILMLKQEGHLEKVHEIYNEMCNDGNCFPDTVTYSALISAFGKLGHYDSAIRLFDEM 260

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG-- 376
           + +G  P  K+Y +++  Y    + +  + ++  M   G   +   Y   ++   + G  
Sbjct: 261 KENGLYPTAKIYTTLLGIYFKLDKVEKALDVIKEMKDKGCTLTVFTYTEWIKGLGKAGRV 320

Query: 377 -----------------DVRGAGQITNIM--------------RIEEFQ--PTLESCTLL 403
                            DV     + NI+              ++E +Q  P + +   +
Sbjct: 321 DDAYRVFLDMIKDGCKPDVVLINSLINILGKVGRLEVTLKLFRKMESWQCKPNVVTYNTV 380

Query: 404 VEAYGQAGDP-DQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           ++A  +   P  +A S F+ M   G  P     + +I  + K N ++KAL LL E+++ G
Sbjct: 381 IKALFECKAPASEAASWFEKMKGCGIAPSSFTYSILIDGFCKTNRIEKALLLLEEMDEKG 440

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522
           F P PA Y  L++ LG+++    A +L  ++ E       ++   +   + + G   +A+
Sbjct: 441 FPPCPAAYCSLINSLGKVKRYEAANELFLELKENCGHSSARVYAVMIKHFGKCGRLSEAV 500

Query: 523 QALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQG 567
               F E +K    PD   +  +++G++  G + +AQ +   M+  G
Sbjct: 501 DL--FNEMEKLGSKPDVYAYNALMSGMVRAGMIDEAQSLLRTMDENG 545



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 95/221 (42%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS LID   K N +E A  +L++M+E G  P       L++   K    + A E F  L+
Sbjct: 413 YSILIDGFCKTNRIEKALLLLEEMDEKGFPPCPAAYCSLINSLGKVKRYEAANELFLELK 472

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
            +      +VY  MI  +   G+    + L + M   G +     Y AL+    + G + 
Sbjct: 473 ENCGHSSARVYAVMIKHFGKCGRLSEAVDLFNEMEKLGSKPDVYAYNALMSGMVRAGMID 532

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  +   M      P L S  +++    + G PD+A   F  M     KPD     +++
Sbjct: 533 EAQSLLRTMDENGCSPDLNSHNIILNGLARTGVPDRAIEMFAKMKSSIIKPDAVSYNTVL 592

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
                  L ++A  L+ E+   GFE    TYT +++ +G++
Sbjct: 593 GCLSHAGLFEEAAKLMREMNLKGFEYNNITYTSILEAVGKV 633



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 113/260 (43%), Gaps = 2/260 (0%)

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG-FQPDKKVYNSMIMAYVNAGQPKLGMS 348
           P   T   ++ M  + G+L++  E +  + + G   PD   Y+++I A+   G     + 
Sbjct: 196 PAATTYNSMILMLKQEGHLEKVHEIYNEMCNDGNCFPDTVTYSALISAFGKLGHYDSAIR 255

Query: 349 LVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYG 408
           L D M  +G+  + +IY  LL  + +   V  A  +   M+ +    T+ + T  ++  G
Sbjct: 256 LFDEMKENGLYPTAKIYTTLLGIYFKLDKVEKALDVIKEMKDKGCTLTVFTYTEWIKGLG 315

Query: 409 QAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPA 468
           +AG  D A   F  MI+ G KPD     S+I   GK   L+  L L  ++E    +P   
Sbjct: 316 KAGRVDDAYRVFLDMIKDGCKPDVVLINSLINILGKVGRLEVTLKLFRKMESWQCKPNVV 375

Query: 469 TYTVLVDWLGRLQL-INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGF 527
           TY  ++  L   +   +EA     K+   G AP       L D + +    +KAL  L  
Sbjct: 376 TYNTVIKALFECKAPASEAASWFEKMKGCGIAPSSFTYSILIDGFCKTNRIEKALLLLEE 435

Query: 528 LEAKKEQMGPDDFERIINGL 547
           ++ K     P  +  +IN L
Sbjct: 436 MDEKGFPPCPAAYCSLINSL 455



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 66/129 (51%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ L+    +   +++A+ +L+ M+ENG  PD+ +  ++++  ++ G  DRA E F
Sbjct: 514 DVYAYNALMSGMVRAGMIDEAQSLLRTMDENGCSPDLNSHNIILNGLARTGVPDRAIEMF 573

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             ++S   +PD   YN+++    +AG  +    L+  M   G E +   Y ++L +  + 
Sbjct: 574 AKMKSSIIKPDAVSYNTVLGCLSHAGLFEEAAKLMREMNLKGFEYNNITYTSILEAVGKV 633

Query: 376 GDVRGAGQI 384
            + R    +
Sbjct: 634 DEDRAPAAL 642



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 75/171 (43%), Gaps = 1/171 (0%)

Query: 246 LVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKA 305
           L L E    ++ R Y+ +I    K   L +A  +  +M + G  PD+     L+    +A
Sbjct: 469 LELKENCGHSSARVYAVMIKHFGKCGRLSEAVDLFNEMEKLGSKPDVYAYNALMSGMVRA 528

Query: 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
           G +D A+    ++  +G  PD   +N ++      G P   + +   M +S I+     Y
Sbjct: 529 GMIDEAQSLLRTMDENGCSPDLNSHNIILNGLARTGVPDRAIEMFAKMKSSIIKPDAVSY 588

Query: 366 LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
             +L   +  G    A ++   M ++ F+    + T ++EA G+  D D+A
Sbjct: 589 NTVLGCLSHAGLFEEAAKLMREMNLKGFEYNNITYTSILEAVGKV-DEDRA 638



 Score = 47.4 bits (111), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 1/158 (0%)

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           +V+  G+A   ++A S F  +     KP      SMI    ++  L+K   +  E+  DG
Sbjct: 169 IVKLLGKAKMVNKALSVFYQIKGRKCKPAATTYNSMILMLKQEGHLEKVHEIYNEMCNDG 228

Query: 463 -FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKA 521
              P   TY+ L+   G+L   + A +L  ++ E G  P  KI  +L  +Y +    +KA
Sbjct: 229 NCFPDTVTYSALISAFGKLGHYDSAIRLFDEMKENGLYPTAKIYTTLLGIYFKLDKVEKA 288

Query: 522 LQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           L  +  ++ K   +    +   I GL   G + DA RV
Sbjct: 289 LDVIKEMKDKGCTLTVFTYTEWIKGLGKAGRVDDAYRV 326


>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g74580-like [Cucumis
           sativus]
          Length = 877

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/329 (21%), Positives = 153/329 (46%), Gaps = 8/329 (2%)

Query: 223 IDWINLLDRLREQNTQL--YFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERIL 280
           + +  ++    ++N Q+  Y    E++  ++    ++  ++KLI    K+  ++++E++ 
Sbjct: 182 VSYCAVISGFYKENCQIEAYHLFDEML--KQGICPDILTFNKLIHVLCKKGNVQESEKLF 239

Query: 281 KKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNA 340
            K+ + G+ P++ T  + +    + G +D A    ES+ S G  PD   YN++I  +   
Sbjct: 240 SKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKH 299

Query: 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
            +       +  M+ SG+E +E  Y  ++  F + G ++ A +I      + F P   + 
Sbjct: 300 SKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTY 359

Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
           + L+      GD ++A + F   +  G K       +++    K+ L+ +AL L+ ++ +
Sbjct: 360 SSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMME 419

Query: 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKK 520
            G  P   TY ++V+ L ++  +++A  +L      G  P      +L D Y +     K
Sbjct: 420 HGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDK 479

Query: 521 ALQALGFLEAKKEQMGPD--DFERIINGL 547
           A++ L  + +    + PD   +  ++NGL
Sbjct: 480 AIEILDTMLS--HGITPDVITYNTLLNGL 506



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 137/322 (42%), Gaps = 6/322 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +  E    +V  Y+ LI    K + L +AE  L KM  +G+ P+  T   +++ + KAG 
Sbjct: 277 IVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGM 336

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A +        GF PD+  Y+S+I    N G     M++    +  G + S  +Y  
Sbjct: 337 MQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNT 396

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L++  ++ G V  A Q+   M      P + +  L+V    + G    A    +  I  G
Sbjct: 397 LVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKG 456

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD     ++I  Y K+  +DKA+ +L  +   G  P   TY  L++ L + + ++   
Sbjct: 457 CIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVV 516

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALG-FLEAKKEQMGPD--DFERII 544
                + E G  P       L + + +   ++K  +A+  F E K   + PD      +I
Sbjct: 517 DTFKAMLEKGCTPNIITYNILIESFCK---DRKVSEAMELFKEMKTRGLTPDIVTLCTLI 573

Query: 545 NGLLAGGFLQDAQRVHGLMEAQ 566
            GL + G L  A  +   +E +
Sbjct: 574 CGLCSNGELDKAYELFVTIEKE 595



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 114/289 (39%), Gaps = 36/289 (12%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E     ++  Y+ +++   K  CL DA  IL      G +PDI T   L+  Y K  N
Sbjct: 417 MMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRN 476

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D+A E  +++ SHG  PD   YN+++     A +    +     M+  G   +   Y  
Sbjct: 477 MDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNI 536

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA----------- 416
           L+ SF +   V  A ++   M+     P + +   L+      G+ D+A           
Sbjct: 537 LIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEY 596

Query: 417 -----RSNFDYMI-------------RLGHK-------PDDRCTASMIAAYGKKNLLDKA 451
                 + F+ MI             +L HK       PD+     MI +Y K   +D A
Sbjct: 597 KFSYSTAIFNIMINAFCXKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLA 656

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
              LLE    G  P   T   +++ L     ++EA  ++  + + G  P
Sbjct: 657 HTFLLENISKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQNGIVP 705



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 63/322 (19%), Positives = 138/322 (42%), Gaps = 4/322 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  ++  + ++  +++A  + ++M+     P + +   ++++  + G   +A + +  ++
Sbjct: 79  YIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMK 138

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  PD   +   + ++   G+P   + L++ M   G E +   Y A++  F +     
Sbjct: 139 DIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQI 198

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  + + M  +   P + +   L+    + G+  ++   F  +++ G  P+       I
Sbjct: 199 EAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFI 258

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
               +K  +D+A  LL  +  +G  P   +Y  L+    +   + EAE  L K+   G  
Sbjct: 259 QGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVE 318

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF--ERIINGLLAGGFLQDAQ 557
           P      ++ + + +AG+ + A + L   +A  +   PD+F    +INGL   G +  A 
Sbjct: 319 PNEFTYNTIINGFCKAGMMQNADKILR--DAMFKGFIPDEFTYSSLINGLCNDGDMNRAM 376

Query: 558 RVHGLMEAQGFAASERLKVALI 579
            V      +GF  S  L   L+
Sbjct: 377 AVFYEAMEKGFKHSIILYNTLV 398



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 83/370 (22%), Positives = 150/370 (40%), Gaps = 17/370 (4%)

Query: 218 LQPSRIDWINLLDRLREQNTQLY-FKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           LQP  +  +     +R QN  L   K+   V +E+ F+  +  Y  +I+        E  
Sbjct: 5   LQPKHVAAV-----IRYQNDPLNALKMFNQVKTEDGFKHTLETYKCMIEKLGLHGKFEAM 59

Query: 277 ERILKKMNENGIVPDIVTSTVLVHM---YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           E +L +M +N  V   +   V + +   Y + G +  A   FE +  +  +P  + YN++
Sbjct: 60  EDVLAEMRKN--VDSKMLEGVYIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAI 117

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           +   V  G       +   M   GI      +   ++SF   G    A ++ N M  +  
Sbjct: 118 MNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGC 177

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
           +    S   ++  + +     +A   FD M++ G  PD      +I    KK  + ++  
Sbjct: 178 EFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEK 237

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
           L  ++ K G  P   T+ + +  L R   I+EA +LL  I   G  P      +L   + 
Sbjct: 238 LFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFC 297

Query: 514 RAGIEKKALQALGFLEAK-KEQMGPDDF--ERIINGLLAGGFLQDAQRVHGLMEAQGFAA 570
           +     K ++A  +L       + P++F    IING    G +Q+A ++      +GF  
Sbjct: 298 K---HSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIP 354

Query: 571 SERLKVALIS 580
            E    +LI+
Sbjct: 355 DEFTYSSLIN 364



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 64/340 (18%), Positives = 133/340 (39%), Gaps = 37/340 (10%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V+ Y+ +++   +      A ++  +M + GI PD+ T T+ +  +   G    A    
Sbjct: 110 SVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLL 169

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
            ++   G + +   Y ++I  +           L D M+  GI      +  L+    + 
Sbjct: 170 NNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKK 229

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G+V+ + ++ + +      P L +  + ++   + G  D+A    + ++  G  PD    
Sbjct: 230 GNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISY 289

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I  + K + L +A   L ++   G EP   TY  +++   +  ++  A+++L     
Sbjct: 290 NTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMF 349

Query: 496 LGEAPP-------------------------------FKIQVSLCDMYARAGIEKK--AL 522
            G  P                                FK  + L +   + G+ K+   L
Sbjct: 350 KGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVK-GLSKQGLVL 408

Query: 523 QALGFLEAKKEQ-MGPD--DFERIINGLLAGGFLQDAQRV 559
           QAL  ++   E    PD   +  ++NGL   G L DA  +
Sbjct: 409 QALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGI 448


>gi|168062855|ref|XP_001783392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162665090|gb|EDQ51786.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 540

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 155/352 (44%), Gaps = 16/352 (4%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L +E    +   Y  ++ A  K   ++     LK+M E GI PD V  ++L+ M+ KAG 
Sbjct: 120 LKDEGLLPDSGTYCAVLSACRKVGNIDKGNETLKEMREAGIKPDQVAYSILIDMFGKAGR 179

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS-----E 362
            + A   F  L+  G+ PD   YN++I A+      K+GM     ++    +RS      
Sbjct: 180 HEDAAATFRELQMSGYLPDSVAYNTLIHAFA-----KVGMVDQATLVFKEAQRSFCLDDP 234

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
            I+  +++ +A+      A  +  +M+    QP       ++ A+ +A  P  A   F+ 
Sbjct: 235 VIFYTMIQVYAKARMADQALHVLKLMKEIGLQPNELGYGSVLNAFMRANQPMGAIKLFEE 294

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
           M     +  +    +M+  Y K      A  LL ++ + GF      Y+ L+D  G++  
Sbjct: 295 MQESNCRFGESTYITMLNVYSKAGFHSAAEELLAKMRQLGFRRNVVAYSTLIDMYGKVGK 354

Query: 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DF 540
           + EA +L   + + G      +  ++ DMY +AG    A + +   E K  ++ PD   +
Sbjct: 355 LQEATRLFSTMKQQGCKGNLIVYNTMLDMYGKAGRINDAERLMA--ELKDSKLVPDTVTY 412

Query: 541 ERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQPTR 592
             +IN     G  ++  RV     A G    +R+ VA++ +  + + RQ ++
Sbjct: 413 TTLINAYNRLGRFEECIRVFEQHRADGLKL-DRILVAIMIN-VYGKARQYSK 462



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/333 (19%), Positives = 137/333 (41%)

Query: 236 NTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTS 295
           N Q+  +  + V S++ F+ +   Y        +       E ++ +M      PDI   
Sbjct: 3   NRQVSVEFYKWVKSQDGFEPHFHLYVAFAHCLMRVQKWVALEILVDEMIGKNCPPDIKFY 62

Query: 296 TVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMIT 355
            +++      G    A+  F  ++  G  PD  +YN +I+ Y   G     M     +  
Sbjct: 63  ALVIKEAINTGRFQTAQHWFSKMKLLGCPPDIVIYNILILEYGKRGNFSQAMKYFSQLKD 122

Query: 356 SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ 415
            G+      Y A+L +  + G++    +    MR    +P   + ++L++ +G+AG  + 
Sbjct: 123 EGLLPDSGTYCAVLSACRKVGNIDKGNETLKEMREAGIKPDQVAYSILIDMFGKAGRHED 182

Query: 416 ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
           A + F  +   G+ PD     ++I A+ K  ++D+A  +  E ++      P  +  ++ 
Sbjct: 183 AAATFRELQMSGYLPDSVAYNTLIHAFAKVGMVDQATLVFKEAQRSFCLDDPVIFYTMIQ 242

Query: 476 WLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQM 535
              + ++ ++A  +L  + E+G  P      S+ + + RA     A++    ++    + 
Sbjct: 243 VYAKARMADQALHVLKLMKEIGLQPNELGYGSVLNAFMRANQPMGAIKLFEEMQESNCRF 302

Query: 536 GPDDFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
           G   +  ++N     GF   A+ +   M   GF
Sbjct: 303 GESTYITMLNVYSKAGFHSAAEELLAKMRQLGF 335



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/359 (20%), Positives = 153/359 (42%), Gaps = 47/359 (13%)

Query: 218 LQPSRIDWINLLDRL----REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCL 273
           ++P ++ +  L+D      R ++    F+  EL +S   +  +   Y+ LI A AK   +
Sbjct: 160 IKPDQVAYSILIDMFGKAGRHEDAAATFR--ELQMS--GYLPDSVAYNTLIHAFAKVGMV 215

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           + A  + K+   +  + D V    ++ +Y+KA   D+A    + ++  G QP++  Y S+
Sbjct: 216 DQATLVFKEAQRSFCLDDPVIFYTMIQVYAKARMADQALHVLKLMKEIGLQPNELGYGSV 275

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           + A++ A QP   + L + M  S     E  Y+ +L  +++ G    A ++   MR   F
Sbjct: 276 LNAFMRANQPMGAIKLFEEMQESNCRFGESTYITMLNVYSKAGFHSAAEELLAKMRQLGF 335

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK------------------------ 429
           +  + + + L++ YG+ G   +A   F  M + G K                        
Sbjct: 336 RRNVVAYSTLIDMYGKVGKLQEATRLFSTMKQQGCKGNLIVYNTMLDMYGKAGRINDAER 395

Query: 430 -----------PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLG 478
                      PD     ++I AY +    ++ + +  +   DG +       ++++  G
Sbjct: 396 LMAELKDSKLVPDTVTYTTLINAYNRLGRFEECIRVFEQHRADGLKLDRILVAIMINVYG 455

Query: 479 RLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP 537
           + +  ++  +LL  + + G  P  +I  ++ ++Y   G+ + A + L     K  ++GP
Sbjct: 456 KARQYSKLAELLEVMPKSGIQPDTRILKTVVEIYEDGGMCENAAELL----RKINELGP 510


>gi|359480463|ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like, partial [Vitis vinifera]
          Length = 621

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 135/309 (43%), Gaps = 13/309 (4%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           +S L D + K   + +A  I  K  +     D+V+ T ++  Y K G  +     F  L 
Sbjct: 260 WSALSDMYGKCGSIGEARHIFDKTVDR----DVVSWTAMIDRYFKEGRREEGFALFSDLL 315

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P++  ++ ++ A  +    +LG  +   M   G + S      L+  + +CG+++
Sbjct: 316 KSGIWPNEFTFSGVLNACADHAAEELGKQVHGYMTRIGFDPSSFAASTLVHMYTKCGNIK 375

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++ N M     +P L S T L+  Y Q G PD+A   F+ +++ G +PD      ++
Sbjct: 376 NARRVFNGMP----RPDLVSWTSLISGYAQNGQPDEALQFFELLLKSGTQPDHITFVGVL 431

Query: 440 AAYGKKNLLDKALNLLLEL-EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           +A     L+DK L     + EK G       Y  L+D L R   + EAE ++ K+    +
Sbjct: 432 SACTHAGLVDKGLEYFDSIKEKHGLTHTADHYACLIDLLSRSGRLQEAEDIIDKMPIEPD 491

Query: 499 APPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQR 558
              +   +  C ++    + K+A +AL  +E +     P  +  + N     G       
Sbjct: 492 KFLWASLLGGCRIHGNLKLAKRAAEALFEIEPEN----PATYTTLANIYATAGLWGGVAE 547

Query: 559 VHGLMEAQG 567
           V  +M+A+G
Sbjct: 548 VRKVMDARG 556



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/265 (21%), Positives = 108/265 (40%), Gaps = 50/265 (18%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVT--------------- 294
           +++   +V  ++ +ID + KE   E+   +   + ++GI P+  T               
Sbjct: 281 DKTVDRDVVSWTAMIDRYFKEGRREEGFALFSDLLKSGIWPNEFTFSGVLNACADHAAEE 340

Query: 295 --------------------STVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
                               ++ LVHMY+K GN+  A+  F  +     +PD   + S+I
Sbjct: 341 LGKQVHGYMTRIGFDPSSFAASTLVHMYTKCGNIKNARRVFNGMP----RPDLVSWTSLI 396

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV-RGAGQITNIMRIEEF 393
             Y   GQP   +   ++++ SG +     ++ +L +    G V +G     +I      
Sbjct: 397 SGYAQNGQPDEALQFFELLLKSGTQPDHITFVGVLSACTHAGLVDKGLEYFDSIKEKHGL 456

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA---YGKKNLLDK 450
             T +    L++   ++G   +A    D + ++  +PD    AS++     +G   L  +
Sbjct: 457 THTADHYACLIDLLSRSGRLQEAE---DIIDKMPIEPDKFLWASLLGGCRIHGNLKLAKR 513

Query: 451 ALNLLLELEKDGFEPGPATYTVLVD 475
           A   L E+E +     PATYT L +
Sbjct: 514 AAEALFEIEPE----NPATYTTLAN 534



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 116/297 (39%), Gaps = 46/297 (15%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS L+    +   L++  ++      +G VP +V S  ++ MY K  +L  AK  F+ + 
Sbjct: 92  YSTLLQLCLQLRALDEGMKVHAHTKTSGFVPGVVISNRILDMYIKCNSLVNAKRLFDEMA 151

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMM----------ITSGIERSE------E 363
               + D   +N MI  Y  AG+ +    L D M          +TSG  R +      E
Sbjct: 152 ----ERDLCSWNIMISGYAKAGRLQEARKLFDQMTERDNFSWTAMTSGYVRHDQHEEALE 207

Query: 364 IYLALLRS-------FAQCGDVRGAGQITNIMRIEEFQPTLESCTL---------LVEAY 407
           ++ A+ R        F     +  +  I ++   +E    +    L         L + Y
Sbjct: 208 LFRAMQRHENFKCNKFTMSSALAASAAIQSLHLGKEIHGHILRIGLDLDGVVWSALSDMY 267

Query: 408 GQAGDPDQARSNFDYMIRLGHKPDDRCTAS---MIAAYGKKNLLDKALNLLLELEKDGFE 464
           G+ G   +AR  FD       K  DR   S   MI  Y K+   ++   L  +L K G  
Sbjct: 268 GKCGSIGEARHIFD-------KTVDRDVVSWTAMIDRYFKEGRREEGFALFSDLLKSGIW 320

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKA 521
           P   T++ +++           +Q+ G ++ +G  P      +L  MY + G  K A
Sbjct: 321 PNEFTFSGVLNACADHAAEELGKQVHGYMTRIGFDPSSFAASTLVHMYTKCGNIKNA 377


>gi|168033824|ref|XP_001769414.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679334|gb|EDQ65783.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 410

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 147/360 (40%), Gaps = 38/360 (10%)

Query: 263 LIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG 322
           +I    +E  L  A  I + M++ G+ P +   T L+  Y+K G L  A   FE+++  G
Sbjct: 36  IISILGREGKLGLAREIFEGMSKAGVAPSVHAYTALLSGYAKQGLLKEAWALFEAMKEKG 95

Query: 323 FQPDKKVYNSMIMAYVNAGQ--PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRG 380
             P+   YN++I A        P L + L + M  +G++ ++  Y  ++ +         
Sbjct: 96  CSPNVLTYNTLINACTKRAYRLPDL-VGLFEEMKQAGVQPNDITYNCMVNACVCLSLFDT 154

Query: 381 AGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIA 440
           A QI   M+     P + S T ++ + G++G  D+A   F+ M  LG  P+     S++ 
Sbjct: 155 ASQILKEMKAVNCLPNVISYTTMINSLGRSGRLDEAVELFEEMKELGRSPNSWTYNSLLK 214

Query: 441 AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE------------- 487
           AY ++   +KA+ L + +E +G  P   TY  ++D  GR  L  EAE             
Sbjct: 215 AYAREGRYEKAMCLFVGMEDEGCIPDLYTYNTVIDMCGRGGLFAEAEGVFLEMQRKGCTP 274

Query: 488 ----------------------QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
                                  LL  +   G  P       L D   +AG   +A+Q  
Sbjct: 275 DRVTYNTMLDAYSKWSRRGRARDLLKTMKRAGCTPDLWTYNILLDAAGKAGSASEAMQIF 334

Query: 526 GFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFN 585
             L+A         F  +IN     G+ ++A+R    M A G   +      L++S + +
Sbjct: 335 HELKAAGHSPNLVSFSALINMYGRLGYFEEAERAWVEMRATGCVPNATAYCGLMNSYSHH 394



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 131/295 (44%), Gaps = 5/295 (1%)

Query: 230 DRLREQNTQLYFKVAELV-----LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMN 284
           + L    T+  +++ +LV     + +   Q N   Y+ +++A    +  + A +ILK+M 
Sbjct: 104 NTLINACTKRAYRLPDLVGLFEEMKQAGVQPNDITYNCMVNACVCLSLFDTASQILKEMK 163

Query: 285 ENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPK 344
               +P++++ T +++   ++G LD A E FE ++  G  P+   YNS++ AY   G+ +
Sbjct: 164 AVNCLPNVISYTTMINSLGRSGRLDEAVELFEEMKELGRSPNSWTYNSLLKAYAREGRYE 223

Query: 345 LGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
             M L   M   G       Y  ++    + G    A  +   M+ +   P   +   ++
Sbjct: 224 KAMCLFVGMEDEGCIPDLYTYNTVIDMCGRGGLFAEAEGVFLEMQRKGCTPDRVTYNTML 283

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
           +AY +     +AR     M R G  PD      ++ A GK     +A+ +  EL+  G  
Sbjct: 284 DAYSKWSRRGRARDLLKTMKRAGCTPDLWTYNILLDAAGKAGSASEAMQIFHELKAAGHS 343

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEK 519
           P   +++ L++  GRL    EAE+   ++   G  P       L + Y+  G+ K
Sbjct: 344 PNLVSFSALINMYGRLGYFEEAERAWVEMRATGCVPNATAYCGLMNSYSHHGMYK 398



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/271 (23%), Positives = 118/271 (43%), Gaps = 13/271 (4%)

Query: 183 EPKPITGKCKLITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLR-----EQN 236
           +P  IT  C  + +  + L   +  S +L E K +   P+ I +  +++ L      ++ 
Sbjct: 133 QPNDITYNC--MVNACVCLSLFDTASQILKEMKAVNCLPNVISYTTMINSLGRSGRLDEA 190

Query: 237 TQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTST 296
            +L+ ++ EL  S  S+      Y+ L+ A+A+E   E A  +   M + G +PD+ T  
Sbjct: 191 VELFEEMKELGRSPNSWT-----YNSLLKAYAREGRYEKAMCLFVGMEDEGCIPDLYTYN 245

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
            ++ M  + G    A+  F  ++  G  PD+  YN+M+ AY    +      L+  M  +
Sbjct: 246 TVIDMCGRGGLFAEAEGVFLEMQRKGCTPDRVTYNTMLDAYSKWSRRGRARDLLKTMKRA 305

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
           G       Y  LL +  + G    A QI + ++     P L S + L+  YG+ G  ++A
Sbjct: 306 GCTPDLWTYNILLDAAGKAGSASEAMQIFHELKAAGHSPNLVSFSALINMYGRLGYFEEA 365

Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447
              +  M   G  P+      ++ +Y    +
Sbjct: 366 ERAWVEMRATGCVPNATAYCGLMNSYSHHGM 396



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/126 (21%), Positives = 61/126 (48%)

Query: 220 PSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERI 279
           P R+ +  +LD   + + +   +     +       ++  Y+ L+DA  K     +A +I
Sbjct: 274 PDRVTYNTMLDAYSKWSRRGRARDLLKTMKRAGCTPDLWTYNILLDAAGKAGSASEAMQI 333

Query: 280 LKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339
             ++   G  P++V+ + L++MY + G  + A+ A+  +R+ G  P+   Y  ++ +Y +
Sbjct: 334 FHELKAAGHSPNLVSFSALINMYGRLGYFEEAERAWVEMRATGCVPNATAYCGLMNSYSH 393

Query: 340 AGQPKL 345
            G  K+
Sbjct: 394 HGMYKV 399



 Score = 41.2 bits (95), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/84 (25%), Positives = 40/84 (47%)

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
           E++    +C  ++   G+ G    AR  F+ M + G  P      ++++ Y K+ LL +A
Sbjct: 25  EYELKEHNCVTIISILGREGKLGLAREIFEGMSKAGVAPSVHAYTALLSGYAKQGLLKEA 84

Query: 452 LNLLLELEKDGFEPGPATYTVLVD 475
             L   +++ G  P   TY  L++
Sbjct: 85  WALFEAMKEKGCSPNVLTYNTLIN 108


>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 137/300 (45%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           L+PS + +  L+D    +         +  + ++     +  Y+ LI A   E   ++AE
Sbjct: 322 LRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAE 381

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
            ++K++ E GI PD +T  +L++ Y +  N  +A    + + + G +P KK Y S++   
Sbjct: 382 CMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVL 441

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
               + K    L   + + G+     ++ AL+       +V+GA ++   M   +  P  
Sbjct: 442 SKKNRMKEADDLFKKITSEGVLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDE 501

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
            +   +++ + + G  ++AR  FD M R G KPD     ++I+ Y ++  +  A  +  E
Sbjct: 502 VTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNE 561

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI 517
           +   GF P   TY  LV  L + Q  + AE+LL ++   G  P      +L +  A+  I
Sbjct: 562 MLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIAKVNI 621



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 95/409 (23%), Positives = 172/409 (42%), Gaps = 13/409 (3%)

Query: 186 PITGKCKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAE 245
           P    C  +    L L + E    L AE   L   S +   N++  +  +  +L  K  +
Sbjct: 184 PTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLK-KAKD 242

Query: 246 LV--LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS 303
            V  +     + N+  Y+ ++  +     +E A+ IL  M    I PD  T   L+    
Sbjct: 243 FVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMC 302

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363
           K G L+ A + FE +   G +P   +YN++I  + N G   +  +  D M+  GI  +  
Sbjct: 303 KQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMS 362

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEE--FQPTLESCTLLVEAYGQAGDPDQARSNFD 421
            Y +L+ +     + R       I  I+E    P   +  +L+  Y +  +  +A    D
Sbjct: 363 TYNSLIHALFM--EQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHD 420

Query: 422 YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ 481
            M+  G KP  +   S++    KKN + +A +L  ++  +G  P    +  L+D      
Sbjct: 421 EMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALIDGHCSNS 480

Query: 482 LINEAEQLLGKISELGEAPPFKIQV-SLCDMYARAGIEKKALQALGFLEAKKEQMGPD-- 538
            +  A +LL  +  + + PP ++   ++   + R G  ++A +   F E K+  + PD  
Sbjct: 481 NVKGAFELLKDMDRM-KVPPDEVTFNTIMQGHCREGKVEEAREL--FDEMKRRGIKPDHI 537

Query: 539 DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQ 587
            F  +I+G    G ++DA RV   M   GF  +     AL+     N++
Sbjct: 538 SFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQE 586



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 112/266 (42%), Gaps = 2/266 (0%)

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           V DY  LI +    N  ++A      M E G++P I T   L+ ++ K    + A   + 
Sbjct: 153 VFDY--LIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYA 210

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
            +     +     +N MI      G+ K     V  M TSG++ +   Y  ++  +   G
Sbjct: 211 EMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSG 270

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
            V  A  I   M+ ++ +P   +   L+    + G  ++A   F+ M++ G +P      
Sbjct: 271 RVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYN 330

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
           ++I  +  K  LD A     E+ K G  P  +TY  L+  L   Q  +EAE ++ +I E 
Sbjct: 331 TLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEK 390

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKAL 522
           G +P       L + Y R    KKA 
Sbjct: 391 GISPDAITYNILINGYCRCANAKKAF 416



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 93/196 (47%)

Query: 258 RDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFES 317
           + Y+ L+   +K+N +++A+ + KK+   G++PD +    L+  +    N+  A E  + 
Sbjct: 432 KTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALIDGHCSNSNVKGAFELLKD 491

Query: 318 LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
           +      PD+  +N+++  +   G+ +    L D M   GI+     +  L+  +++ GD
Sbjct: 492 MDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGD 551

Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
           ++ A ++ N M    F PT+ +   LV+   +  + D A      M+  G  PDD    +
Sbjct: 552 IKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFT 611

Query: 438 MIAAYGKKNLLDKALN 453
           +I    K N+ D+  N
Sbjct: 612 LIEGIAKVNIPDENKN 627


>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
           EFFECT EMBRYO ARREST 40; Flags: Precursor
 gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
 gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
 gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 754

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 132/301 (43%), Gaps = 9/301 (2%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N   Y+ LI    KEN +E+A  + + +   GI+PD+ T   L+       N   A E F
Sbjct: 364 NTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELF 423

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E +RS G +PD+  YN +I +  + G+    ++++  M  SG  RS   Y  L+  F + 
Sbjct: 424 EEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKA 483

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
              R A +I + M +        +   L++   ++   + A    D MI  G KPD    
Sbjct: 484 NKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTY 543

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            S++  + +   + KA +++  +  +G EP   TY  L+  L +   +  A +LL  I  
Sbjct: 544 NSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQM 603

Query: 496 LG-EAPPFKIQVSLCDMYARAGIEKKALQALG-FLEAKKEQMGPDD---FERIINGLLAG 550
            G    P      +  ++ +    +K  +A+  F E  ++   P D   +  +  GL  G
Sbjct: 604 KGINLTPHAYNPVIQGLFRK----RKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNG 659

Query: 551 G 551
           G
Sbjct: 660 G 660



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/338 (23%), Positives = 146/338 (43%), Gaps = 13/338 (3%)

Query: 231 RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKM-NENGIV 289
           R+REQ       + E   S  +   NV     ++    KE  +EDA   +++M N++G  
Sbjct: 245 RIREQ-------MVEFGCSWSNVSVNV-----IVHGFCKEGRVEDALNFIQEMSNQDGFF 292

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL 349
           PD  T   LV+   KAG++  A E  + +   G+ PD   YNS+I      G+ K  + +
Sbjct: 293 PDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEV 352

Query: 350 VDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409
           +D MIT     +   Y  L+ +  +   V  A ++  ++  +   P + +   L++    
Sbjct: 353 LDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCL 412

Query: 410 AGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPAT 469
             +   A   F+ M   G +PD+     +I +   K  LD+ALN+L ++E  G      T
Sbjct: 413 TRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVIT 472

Query: 470 YTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLE 529
           Y  L+D   +     EAE++  ++   G +       +L D   ++   + A Q +  + 
Sbjct: 473 YNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMI 532

Query: 530 AKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
            + ++     +  ++     GG ++ A  +   M + G
Sbjct: 533 MEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNG 570



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 141/334 (42%), Gaps = 5/334 (1%)

Query: 241 FKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
             V + ++ E   + +   Y+++++     N L+  E    KM+  GI PD+ T  VL+ 
Sbjct: 138 LSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIK 197

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
              +A  L  A    E + S+G  PD+K + +++  Y+  G     + + + M+  G   
Sbjct: 198 ALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSW 257

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEE-FQPTLESCTLLVEAYGQAGDPDQARSN 419
           S      ++  F + G V  A      M  ++ F P   +   LV    +AG    A   
Sbjct: 258 SNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEI 317

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
            D M++ G+ PD     S+I+   K   + +A+ +L ++      P   TY  L+  L +
Sbjct: 318 MDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCK 377

Query: 480 LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD 539
              + EA +L   ++  G  P      SL          + A++   F E + +   PD+
Sbjct: 378 ENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMEL--FEEMRSKGCEPDE 435

Query: 540 F--ERIINGLLAGGFLQDAQRVHGLMEAQGFAAS 571
           F    +I+ L + G L +A  +   ME  G A S
Sbjct: 436 FTYNMLIDSLCSKGKLDEALNMLKQMELSGCARS 469



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 78/386 (20%), Positives = 156/386 (40%), Gaps = 36/386 (9%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           L+P    +  +L+ L + N+    +++   +S    + +V  ++ LI A  + + L  A 
Sbjct: 150 LKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAI 209

Query: 278 RILKKMNENGIVPDIVTST-----------------------------------VLVHMY 302
            +L+ M   G+VPD  T T                                   V+VH +
Sbjct: 210 LMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGF 269

Query: 303 SKAGNLDRAKEAFESLRSH-GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS 361
            K G ++ A    + + +  GF PD+  +N+++     AG  K  + ++D+M+  G +  
Sbjct: 270 CKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPD 329

Query: 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421
              Y +++    + G+V+ A ++ + M   +  P   +   L+    +    ++A     
Sbjct: 330 VYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELAR 389

Query: 422 YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ 481
            +   G  PD     S+I           A+ L  E+   G EP   TY +L+D L    
Sbjct: 390 VLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKG 449

Query: 482 LINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFE 541
            ++EA  +L ++   G A       +L D + +A   ++A +    +E          + 
Sbjct: 450 KLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYN 509

Query: 542 RIINGLLAGGFLQDAQRVHGLMEAQG 567
            +I+GL     ++DA ++   M  +G
Sbjct: 510 TLIDGLCKSRRVEDAAQLMDQMIMEG 535



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 67/302 (22%), Positives = 125/302 (41%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           V+ +E +  +V  Y+ +I    K   +++A  +L +M      P+ VT   L+    K  
Sbjct: 320 VMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKEN 379

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            ++ A E    L S G  PD   +NS+I         ++ M L + M + G E  E  Y 
Sbjct: 380 QVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYN 439

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+ S    G +  A  +   M +     ++ +   L++ + +A    +A   FD M   
Sbjct: 440 MLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVH 499

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G   +     ++I    K   ++ A  L+ ++  +G +P   TY  L+    R   I +A
Sbjct: 500 GVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKA 559

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
             ++  ++  G  P      +L     +AG  + A + L  ++ K   + P  +  +I G
Sbjct: 560 ADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQG 619

Query: 547 LL 548
           L 
Sbjct: 620 LF 621


>gi|115465970|ref|NP_001056584.1| Os06g0111300 [Oryza sativa Japonica Group]
 gi|113594624|dbj|BAF18498.1| Os06g0111300 [Oryza sativa Japonica Group]
          Length = 978

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 136/310 (43%), Gaps = 1/310 (0%)

Query: 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320
           S+LI   A+E   ++A+ + + + E G  PD      L+  Y +A  L++A++ FE+  S
Sbjct: 581 SQLIMKFAREGSTDEAKFLYEHLTELGAKPDDTAIATLIVQYGQAQQLEQAQKLFET-AS 639

Query: 321 HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRG 380
             F     VYN+M+ A    G+ +    L   +I  G          L+    + G +  
Sbjct: 640 TSFPVGGSVYNAMVDALCRCGKTEEAYRLFMELIDQGHNGDAVTISILVTHLTKQGKLYS 699

Query: 381 AGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIA 440
           A  I + M       ++++  +++  YGQ G  ++A   F     LG   D++   +M++
Sbjct: 700 AVSIYDRMISSGIPRSMQTFNIMISVYGQGGKLEKAVEMFSAAQELGLPIDEKTYTNMLS 759

Query: 441 AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
            YGK     +A  L   +++DG  PG  ++  +++      L NEAE +  ++ +    P
Sbjct: 760 FYGKAGKHHEASLLFSRMKEDGIRPGKISFNTMINAYATSGLHNEAEIIFQEMQKNNHVP 819

Query: 501 PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVH 560
                ++L   Y       KA +A+  +           F  +I+  L  G + +AQR++
Sbjct: 820 DSHTYLALIRAYTEGKCYSKAEEAIQMMLRSNMTPSCTHFNHLISAFLKEGQIDEAQRMY 879

Query: 561 GLMEAQGFAA 570
             ME  G  A
Sbjct: 880 NQMEEAGIPA 889



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 129/288 (44%), Gaps = 2/288 (0%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           ++ +V  Y+ L+  + +   ++ AE    +M + G  PD V    L+  Y++ G L+   
Sbjct: 166 YEPSVVAYTILLRLYGQVGKVKLAEVTFLEMLQAGCEPDAVACGTLLCAYARWGKLNDML 225

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
             + ++R     P   V+N M+ +          + L + M+ + +  ++  Y  ++ S+
Sbjct: 226 MFYAAVRRRDIVPSISVFNFMVSSLQKQKLHGKVIHLWEQMLEANVAPNQFTYTVVIGSY 285

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
           A+ G +  A      M+   F P   + +LL+    + G  ++A   +D M      P +
Sbjct: 286 AKEGMLEEAMDAFGEMKRRRFVPEEATYSLLISLCAKHGKGEEALGLYDEMKVKSIVPSN 345

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
              AS++  Y K     KAL+L  E+E++   P    Y +LV   G+L L  +A+++  +
Sbjct: 346 YTCASVLTLYYKNEDYSKALSLFSEMEQNKIVPDEVIYGILVRIYGKLGLYEDAQRMFEE 405

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF 540
           I + G     +  V++  ++       +ALQ L  + A+   + P  F
Sbjct: 406 IDKAGLLSDEQTYVAMAQVHMNVQNYDRALQVLDAMRAR--NVKPSQF 451



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 62/293 (21%), Positives = 122/293 (41%), Gaps = 5/293 (1%)

Query: 249 SEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNL 308
           +  SF      Y+ ++DA  +    E+A R+  ++ + G   D VT ++LV   +K G L
Sbjct: 638 ASTSFPVGGSVYNAMVDALCRCGKTEEAYRLFMELIDQGHNGDAVTISILVTHLTKQGKL 697

Query: 309 DRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLAL 368
             A   ++ + S G     + +N MI  Y   G+ +  + +       G+   E+ Y  +
Sbjct: 698 YSAVSIYDRMISSGIPRSMQTFNIMISVYGQGGKLEKAVEMFSAAQELGLPIDEKTYTNM 757

Query: 369 LRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH 428
           L  + + G    A  + + M+ +  +P   S   ++ AY  +G  ++A   F  M +  H
Sbjct: 758 LSFYGKAGKHHEASLLFSRMKEDGIRPGKISFNTMINAYATSGLHNEAEIIFQEMQKNNH 817

Query: 429 KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQ 488
            PD     ++I AY +     KA   +  + +    P    +  L+    +   I+EA++
Sbjct: 818 VPDSHTYLALIRAYTEGKCYSKAEEAIQMMLRSNMTPSCTHFNHLISAFLKEGQIDEAQR 877

Query: 489 LLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL-QALGFLEAKKEQMGPDDF 540
           +  ++ E G        ++ C    R  ++   +   + F E     + PD F
Sbjct: 878 MYNQMEEAG----IPADLACCRTMMRMHLDHGYVDDGILFFETACRLLKPDSF 926



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 90/205 (43%), Gaps = 1/205 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS LI   AK    E+A  +  +M    IVP   T   ++ +Y K  +  +A   F  + 
Sbjct: 313 YSLLISLCAKHGKGEEALGLYDEMKVKSIVPSNYTCASVLTLYYKNEDYSKALSLFSEME 372

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
            +   PD+ +Y  ++  Y   G  +    + + +  +G+   E+ Y+A+ +      +  
Sbjct: 373 QNKIVPDEVIYGILVRIYGKLGLYEDAQRMFEEIDKAGLLSDEQTYVAMAQVHMNVQNYD 432

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A Q+ + MR    +P+  S + L+  +    D D A   F  +   G  PD  C   ++
Sbjct: 433 RALQVLDAMRARNVKPSQFSYSALLRCHVAKEDVDAAEDTFRALSNYG-PPDVFCCNDLL 491

Query: 440 AAYGKKNLLDKALNLLLELEKDGFE 464
             Y +   LDKA  L+L++ K+  +
Sbjct: 492 RLYMRLGHLDKARALILKMRKEALQ 516



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 119/266 (44%), Gaps = 11/266 (4%)

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
            + ++M E  + P+  T TV++  Y+K G L+ A +AF  ++   F P++  Y+ +I   
Sbjct: 261 HLWEQMLEANVAPNQFTYTVVIGSYAKEGMLEEAMDAFGEMKRRRFVPEEATYSLLISLC 320

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
              G+ +  + L D M    I  S     ++L  + +  D   A  + + M   +  P  
Sbjct: 321 AKHGKGEEALGLYDEMKVKSIVPSNYTCASVLTLYYKNEDYSKALSLFSEMEQNKIVPDE 380

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
               +LV  YG+ G  + A+  F+ + + G   D++   +M   +      D+AL +L  
Sbjct: 381 VIYGILVRIYGKLGLYEDAQRMFEEIDKAGLLSDEQTYVAMAQVHMNVQNYDRALQVLDA 440

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCD----MYA 513
           +     +P   +Y+ L+      + ++ AE     +S  G  PP    V  C+    +Y 
Sbjct: 441 MRARNVKPSQFSYSALLRCHVAKEDVDAAEDTFRALSNYG--PP---DVFCCNDLLRLYM 495

Query: 514 RAGIEKKALQALGFLEAKKEQMGPDD 539
           R G   KA +AL  L+ +KE +  D+
Sbjct: 496 RLGHLDKA-RAL-ILKMRKEALQFDE 519



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 68/309 (22%), Positives = 133/309 (43%), Gaps = 49/309 (15%)

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL 349
           P +V  T+L+ +Y + G +  A+  F  +   G +PD     +++ AY   G+      L
Sbjct: 168 PSVVAYTILLRLYGQVGKVKLAEVTFLEMLQAGCEPDAVACGTLLCAYARWGK------L 221

Query: 350 VDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409
            DM++          Y A+ R      D+  +  + N M     +  L     ++  + Q
Sbjct: 222 NDMLM---------FYAAVRRR-----DIVPSISVFNFMVSSLQKQKLHG--KVIHLWEQ 265

Query: 410 AGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPAT 469
             + + A + F Y + +G             +Y K+ +L++A++   E+++  F P  AT
Sbjct: 266 MLEANVAPNQFTYTVVIG-------------SYAKEGMLEEAMDAFGEMKRRRFVPEEAT 312

Query: 470 YTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLE 529
           Y++L+    +     EA  L  ++      P      S+  +Y +     KAL    F E
Sbjct: 313 YSLLISLCAKHGKGEEALGLYDEMKVKSIVPSNYTCASVLTLYYKNEDYSKALSL--FSE 370

Query: 530 AKKEQMGPDDFERIINGLLAG-----GFLQDAQRVHGLMEAQGFAASERLKVAL----IS 580
            ++ ++ PD+   +I G+L       G  +DAQR+   ++  G  + E+  VA+    ++
Sbjct: 371 MEQNKIVPDE---VIYGILVRIYGKLGLYEDAQRMFEEIDKAGLLSDEQTYVAMAQVHMN 427

Query: 581 SQTFNRQRQ 589
            Q ++R  Q
Sbjct: 428 VQNYDRALQ 436



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/288 (20%), Positives = 113/288 (39%), Gaps = 40/288 (13%)

Query: 298 LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG 357
           L+  +++ G+ D AK  +E L   G +PD     ++I+ Y  A Q               
Sbjct: 583 LIMKFAREGSTDEAKFLYEHLTELGAKPDDTAIATLIVQYGQAQQ--------------- 627

Query: 358 IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
           +E++++++     SF   G V  A                     +V+A  + G  ++A 
Sbjct: 628 LEQAQKLFETASTSFPVGGSVYNA---------------------MVDALCRCGKTEEAY 666

Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
             F  +I  GH  D    + ++    K+  L  A+++   +   G      T+ +++   
Sbjct: 667 RLFMELIDQGHNGDAVTISILVTHLTKQGKLYSAVSIYDRMISSGIPRSMQTFNIMISVY 726

Query: 478 GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP 537
           G+   + +A ++     ELG     K   ++   Y +AG   +A  +L F   K++ + P
Sbjct: 727 GQGGKLEKAVEMFSAAQELGLPIDEKTYTNMLSFYGKAGKHHEA--SLLFSRMKEDGIRP 784

Query: 538 D--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQT 583
               F  +IN     G   +A+ +   M+           +ALI + T
Sbjct: 785 GKISFNTMINAYATSGLHNEAEIIFQEMQKNNHVPDSHTYLALIRAYT 832


>gi|218194139|gb|EEC76566.1| hypothetical protein OsI_14394 [Oryza sativa Indica Group]
          Length = 701

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 116/254 (45%), Gaps = 8/254 (3%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS ++D +A+    E+   +  +   +G  PD V   VL  M+ +AG+ D  +  F+ +R
Sbjct: 249 YSAILDVYAQLGMKEEVLALFDRARGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFKEMR 308

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +P+  VYN+++ A    G+P L  +L + M   G+E +     AL + + +    R
Sbjct: 309 EVGIKPNIFVYNALLEALGKTGKPGLARNLFEEMTAEGVEPNARTLTALAKIYGRARWGR 368

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM--IRLGH--KPDDRCT 435
            A Q+   MR ++       C  L+      G   +A   F  M    LG   KPD    
Sbjct: 369 DALQLWEQMREKKLPADNILCNTLLSMCADVGLVGEAEQLFSEMKDPDLGDVPKPDKWSY 428

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            +MI  YG     D+AL L  E+ + G EP   +YT+++  LG+   I EA  +L    E
Sbjct: 429 TAMINIYGSSGDADRALQLFAEMVESGIEPNIMSYTIVIQCLGKAGRIQEAVDVL----E 484

Query: 496 LGEAPPFKIQVSLC 509
            G A   K    LC
Sbjct: 485 AGMAKGLKPDDRLC 498



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 97/405 (23%), Positives = 173/405 (42%), Gaps = 11/405 (2%)

Query: 185 KPITGKCKLITDKILSLEKEEDPSPLLAEW-KELLQPSRIDWINLLDRLREQ-NTQLYFK 242
           +P +   + +   I +L    D +P L ++      PS  D + LL+ L       L   
Sbjct: 101 QPFSDPLQTVLRAIRALPDAADLAPTLHDFFPPASPPSTSDALLLLNYLHPSWRKSLSLL 160

Query: 243 VAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMY 302
                L + +F  +   ++  + +         AER+   M  +G+  D +T + L+   
Sbjct: 161 CWLRALPDGAFPLDTIVFNVALKSLRAARQWPQAERLALDMLASGVPLDNITYSTLITAA 220

Query: 303 SKAGNLDRAKEAFESLR-SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS 361
            +    D+A E FE +  S G  PD+  Y++++  Y   G  +  ++L D    SG +  
Sbjct: 221 RRCRQFDKAVEWFERMYASDGVLPDEVTYSAILDVYAQLGMKEEVLALFDRARGSGWKPD 280

Query: 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421
              +  L + F + GD  G   +   MR    +P +     L+EA G+ G P  AR+ F+
Sbjct: 281 HVAFAVLAKMFGEAGDYDGIQFVFKEMREVGIKPNIFVYNALLEALGKTGKPGLARNLFE 340

Query: 422 YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ 481
            M   G +P+ R   ++   YG+      AL L  ++ +            L+     + 
Sbjct: 341 EMTAEGVEPNARTLTALAKIYGRARWGRDALQLWEQMREKKLPADNILCNTLLSMCADVG 400

Query: 482 LINEAEQLLGKI--SELGEAP-PFKIQ-VSLCDMYARAGIEKKALQALGFLEAKKEQMGP 537
           L+ EAEQL  ++   +LG+ P P K    ++ ++Y  +G   +ALQ   F E  +  + P
Sbjct: 401 LVGEAEQLFSEMKDPDLGDVPKPDKWSYTAMINIYGSSGDADRALQL--FAEMVESGIEP 458

Query: 538 D--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
           +   +  +I  L   G +Q+A  V     A+G    +RL   L+S
Sbjct: 459 NIMSYTIVIQCLGKAGRIQEAVDVLEAGMAKGLKPDDRLCGCLLS 503


>gi|125548275|gb|EAY94097.1| hypothetical protein OsI_15870 [Oryza sativa Indica Group]
          Length = 554

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 118/246 (47%), Gaps = 1/246 (0%)

Query: 218 LQPSRIDWINLLDRLREQN-TQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L+P+      L+D L +   T+  F++   ++   S++ NV  Y+ +I  + +E  L  A
Sbjct: 274 LKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARA 333

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
           E +L +M E G+ P+  T T L+  + K G+ DRA E    ++  GF P+   YN++I  
Sbjct: 334 EMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDG 393

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           +   G+ +    ++ M  + G++  +  Y  L+    + G +  A  + + M      P 
Sbjct: 394 FCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENGCCPD 453

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           +E+ T L+  Y Q    ++++  FD  + +G  P  +   SMIA Y K      AL +  
Sbjct: 454 IEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTMALRVFE 513

Query: 457 ELEKDG 462
            + ++G
Sbjct: 514 RMVQNG 519



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 123/292 (42%), Gaps = 14/292 (4%)

Query: 191 CKLITDKILSLEKEEDPSPLLAEWKELLQPSRI----DWINLLDRLREQNTQLYFKVAEL 246
           C ++   +    + +D S       E+  P  +     WI+ L + R      Y K A  
Sbjct: 211 CTVVVRSLCEKGRFKDVSEFFRRMLEMGTPPNVVNYTAWIDGLCKRR------YVKQAFH 264

Query: 247 VLSE---ESFQTNVRDYSKLIDAHAKENCLEDAERI-LKKMNENGIVPDIVTSTVLVHMY 302
           VL E      + NV  ++ LID   K    E A R+ LK +  +   P++ T TV++  Y
Sbjct: 265 VLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGY 324

Query: 303 SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE 362
            + G L RA+     +   G +P+   Y ++I  +   G       L++ M   G   + 
Sbjct: 325 CREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNI 384

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
             Y A++  F + G ++ A ++  +   +  +    + T+L+  + + G    A   FD 
Sbjct: 385 YTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDR 444

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
           M+  G  PD     S+I+ Y ++  ++++     +    G  P   TYT ++
Sbjct: 445 MVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMI 496



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/234 (20%), Positives = 102/234 (43%), Gaps = 1/234 (0%)

Query: 258 RDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFES 317
           R +  L+    +E  +E+ + +L  M   G   D  T TV+V    + G      E F  
Sbjct: 174 RSFRALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEFFRR 233

Query: 318 LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
           +   G  P+   Y + I         K    +++ M+  G++ +   +  L+    + G 
Sbjct: 234 MLEMGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGW 293

Query: 378 VRGAGQI-TNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
              A ++   +++   ++P + + T+++  Y + G   +A      M+  G KP+     
Sbjct: 294 TERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYT 353

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           ++I  + K    D+A  L+ +++++GF P   TY  ++D   +   I EA ++L
Sbjct: 354 TLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVL 407



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 76/347 (21%), Positives = 133/347 (38%), Gaps = 63/347 (18%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV +Y+  ID   K   ++ A  +L++M   G+ P++ T T L+    K G  +RA   F
Sbjct: 242 NVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRLF 301

Query: 316 ESL-RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
             L +S  ++P+   Y  MI  Y   G+    ++  +M++   +E               
Sbjct: 302 LKLIKSSSYKPNVHTYTVMIGGYCREGK----LARAEMLLVRMVE--------------- 342

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
                           +  +P   + T L+  + + G  D+A    + M + G  P+   
Sbjct: 343 ----------------QGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYT 386

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
             ++I  + KK  + +A  +L      G +    TYT+L+    +   I  A  L  ++ 
Sbjct: 387 YNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMV 446

Query: 495 ELGEAPPFKIQVSLCDMYAR----------------AGI--EKKALQAL--GFLEAKKEQ 534
           E G  P  +   SL   Y +                 G+   K+   ++  G+ +  +  
Sbjct: 447 ENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRST 506

Query: 535 MGPDDFERII-NGLLAGGFLQ------DAQRVHGLMEAQGFAASERL 574
           M    FER++ NG  A   L        A R   L EA G  A+  L
Sbjct: 507 MALRVFERMVQNGCFADSILMCSNNVVSATRHSPLHEAHGLGANRML 553



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/315 (20%), Positives = 127/315 (40%), Gaps = 3/315 (0%)

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A ++   M   G+ PD  +   LV +  + G ++       ++  +GF  D      ++ 
Sbjct: 157 ARKVFDGMTRAGVCPDERSFRALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVR 216

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
           +    G+ K        M+  G   +   Y A +    +   V+ A  +   M     +P
Sbjct: 217 SLCEKGRFKDVSEFFRRMLEMGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKP 276

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIR-LGHKPDDRCTASMIAAYGKKNLLDKALNL 454
            + + T L++   + G  ++A   F  +I+   +KP+      MI  Y ++  L +A  L
Sbjct: 277 NVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEML 336

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
           L+ + + G +P   TYT L+    +    + A +L+ K+ + G  P      ++ D + +
Sbjct: 337 LVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCK 396

Query: 515 AGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERL 574
            G  ++A + L    ++  +     +  +I      G +  A  +   M   G       
Sbjct: 397 KGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENGCCPDIEA 456

Query: 575 KVALISSQTFNRQRQ 589
             +LIS  T+ +QRQ
Sbjct: 457 YTSLIS--TYCQQRQ 469



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/272 (21%), Positives = 107/272 (39%), Gaps = 1/272 (0%)

Query: 298 LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG 357
           +V  + +AG L  A +    +RSHG     +  N ++   +  G       + D M  +G
Sbjct: 109 MVAAFGEAGRLPEAADMVLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAG 168

Query: 358 IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
           +   E  + AL+    + G V     +   M    F     +CT++V +  + G      
Sbjct: 169 VCPDERSFRALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVS 228

Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
             F  M+ +G  P+     + I    K+  + +A ++L E+   G +P   T+T L+D L
Sbjct: 229 EFFRRMLEMGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGL 288

Query: 478 GRLQLINEAEQLLGK-ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG 536
            ++     A +L  K I      P       +   Y R G   +A   L  +  +  +  
Sbjct: 289 CKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPN 348

Query: 537 PDDFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
            + +  +I G   GG    A  +   M+ +GF
Sbjct: 349 TNTYTTLIGGHCKGGSFDRAFELMNKMKQEGF 380



 Score = 45.4 bits (106), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 41/199 (20%), Positives = 82/199 (41%)

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
           + E+   ++ +F + G +  A  +   MR       +E+   ++    + G    AR  F
Sbjct: 102 AHEVMRGMVAAFGEAGRLPEAADMVLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVF 161

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
           D M R G  PD+R   +++    ++  +++   LL  + + GF    AT TV+V  L   
Sbjct: 162 DGMTRAGVCPDERSFRALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEK 221

Query: 481 QLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF 540
               +  +   ++ E+G  P      +  D   +    K+A   L  +  +  +      
Sbjct: 222 GRFKDVSEFFRRMLEMGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTH 281

Query: 541 ERIINGLLAGGFLQDAQRV 559
             +I+GL   G+ + A R+
Sbjct: 282 TTLIDGLCKIGWTERAFRL 300


>gi|15236546|ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana]
 gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g31850, chloroplastic; AltName: Full=Protein PROTON
           GRADIENT REGULATION 3; Flags: Precursor
 gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis thaliana]
 gi|7270088|emb|CAB79903.1| putative protein [Arabidopsis thaliana]
 gi|332660567|gb|AEE85967.1| proton gradient regulation 3 [Arabidopsis thaliana]
          Length = 1112

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 128/278 (46%), Gaps = 3/278 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  L+D  +    L+  ++   +M ++G VPD+VT T+LV    KAGN   A +  + +R
Sbjct: 331 YITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMR 390

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P+   YN++I   +   +    + L   M + G++ +   Y+  +  + + GD  
Sbjct: 391 DQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSV 450

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A +    M+ +   P + +C   + +  +AG   +A+  F  +  +G  PD      M+
Sbjct: 451 SALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMM 510

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             Y K   +D+A+ LL E+ ++G EP       L++ L +   ++EA ++  ++ E+   
Sbjct: 511 KCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLK 570

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP 537
           P     V+   + A  G   K  +A+   E   ++  P
Sbjct: 571 PTV---VTYNTLLAGLGKNGKIQEAIELFEGMVQKGCP 605



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 144/320 (45%), Gaps = 6/320 (1%)

Query: 254  QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
            Q  +  Y+ LI    + + +E A+ +  ++   G +PD+ T   L+  Y K+G +D   E
Sbjct: 782  QPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFE 841

Query: 314  AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV-DMMITSGIERSEEIYLALLRSF 372
             ++ + +H  + +   +N +I   V AG     + L  D+M       +   Y  L+   
Sbjct: 842  LYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGL 901

Query: 373  AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            ++ G +  A Q+   M     +P      +L+  +G+AG+ D A + F  M++ G +PD 
Sbjct: 902  SKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDL 961

Query: 433  RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
            +  + ++        +D+ L+   EL++ G  P    Y ++++ LG+   + EA  L  +
Sbjct: 962  KTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNE 1021

Query: 493  I-SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLA 549
            + +  G  P      SL      AG+ ++A +   + E ++  + P+   F  +I G   
Sbjct: 1022 MKTSRGITPDLYTYNSLILNLGIAGMVEEAGKI--YNEIQRAGLEPNVFTFNALIRGYSL 1079

Query: 550  GGFLQDAQRVHGLMEAQGFA 569
             G  + A  V+  M   GF+
Sbjct: 1080 SGKPEHAYAVYQTMVTGGFS 1099



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 151/343 (44%), Gaps = 10/343 (2%)

Query: 219 QPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAER 278
           +P R+ +I LLDR  +       K     + ++    +V  ++ L+DA  K     +A  
Sbjct: 325 KPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFD 384

Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338
            L  M + GI+P++ T   L+    +   LD A E F ++ S G +P    Y   I  Y 
Sbjct: 385 TLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYG 444

Query: 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398
            +G     +   + M T GI  +     A L S A+ G  R A QI   ++     P   
Sbjct: 445 KSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSV 504

Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
           +  ++++ Y + G+ D+A      M+  G +PD     S+I    K + +D+A  + + +
Sbjct: 505 TYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRM 564

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQV-SLCDMYARAGI 517
           ++   +P   TY  L+  LG+   I EA +L   + + G  PP  I   +L D   +   
Sbjct: 565 KEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKG-CPPNTITFNTLFDCLCKNDE 623

Query: 518 EKKALQALGFLEAKKEQMG--PDDF--ERIINGLLAGGFLQDA 556
              AL+ L     K   MG  PD F    II GL+  G +++A
Sbjct: 624 VTLALKML----FKMMDMGCVPDVFTYNTIIFGLVKNGQVKEA 662



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 130/290 (44%), Gaps = 6/290 (2%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           E F+ +++ YS L+    K   ++    +LK+M   G+ P++ T T+ + +  +AG ++ 
Sbjct: 217 EGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINE 276

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A E  + +   G  PD   Y  +I A   A +      + + M T   +     Y+ LL 
Sbjct: 277 AYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLD 336

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
            F+   D+    Q  + M  +   P + + T+LV+A  +AG+  +A    D M   G  P
Sbjct: 337 RFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILP 396

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           +     ++I    + + LD AL L   +E  G +P   TY V +D+ G+      A +  
Sbjct: 397 NLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETF 456

Query: 491 GKISELGEAPPFKIQVSLCDMY--ARAGIEKKALQALGFLEAKKEQMGPD 538
            K+   G AP   I      +Y  A+AG +++A Q   F   K   + PD
Sbjct: 457 EKMKTKGIAP--NIVACNASLYSLAKAGRDREAKQI--FYGLKDIGLVPD 502



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 123/301 (40%), Gaps = 37/301 (12%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           L+ A   L+KM E G V +  +   L+H+  K+     A E +  +   GF+P  + Y+S
Sbjct: 169 LKQAPYALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSS 228

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +++           M L+  M T G++ +   +   +R   + G +  A +I   M  E 
Sbjct: 229 LMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEG 288

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P + + T+L++A   A   D A+  F+ M    HKPD     +++  +     LD   
Sbjct: 289 CGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVK 348

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLG---------------------------------- 478
               E+EKDG  P   T+T+LVD L                                   
Sbjct: 349 QFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGL 408

Query: 479 -RLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP 537
            R+  +++A +L G +  LG  P     +   D Y ++G    AL+   F + K + + P
Sbjct: 409 LRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALET--FEKMKTKGIAP 466

Query: 538 D 538
           +
Sbjct: 467 N 467



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 139/314 (44%), Gaps = 10/314 (3%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + +E    +V  Y+ LIDA      L+ A+ + +KM      PD VT   L+  +S   +
Sbjct: 284 MDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRD 343

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           LD  K+ +  +   G  PD   +  ++ A   AG        +D+M   GI  +   Y  
Sbjct: 344 LDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNT 403

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    +   +  A ++   M     +PT  +  + ++ YG++GD   A   F+ M   G
Sbjct: 404 LICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKG 463

Query: 428 HKPD-DRCTASM--IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
             P+   C AS+  +A  G+     +A  +   L+  G  P   TY +++    ++  I+
Sbjct: 464 IAPNIVACNASLYSLAKAGRDR---EAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEID 520

Query: 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFER 542
           EA +LL ++ E G  P   +  SL +   +A    +A +   F+  K+ ++ P    +  
Sbjct: 521 EAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKM--FMRMKEMKLKPTVVTYNT 578

Query: 543 IINGLLAGGFLQDA 556
           ++ GL   G +Q+A
Sbjct: 579 LLAGLGKNGKIQEA 592



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 113/242 (46%), Gaps = 6/242 (2%)

Query: 263 LIDAHAKENCLEDAERILKKMNEN-GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSH 321
           +I    K N +  A  + +K  ++ G+ P + T  +L+    +A  ++ A++ F  ++S 
Sbjct: 755 IIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKST 814

Query: 322 GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGA 381
           G  PD   YN ++ AY  +G+      L   M T   E +   +  ++    + G+V  A
Sbjct: 815 GCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDA 874

Query: 382 GQI-TNIMRIEEFQPTLESCTL--LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             +  ++M   +F PT  +CT   L++   ++G   +A+  F+ M+  G +P+      +
Sbjct: 875 LDLYYDLMSDRDFSPT--ACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNIL 932

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           I  +GK    D A  L   + K+G  P   TY+VLVD L  +  ++E      ++ E G 
Sbjct: 933 INGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGL 992

Query: 499 AP 500
            P
Sbjct: 993 NP 994



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 73/326 (22%), Positives = 126/326 (38%), Gaps = 12/326 (3%)

Query: 266 AHAKENC--LEDAERILKKMNENGIVPDIV--------TSTVLVHMYSKA--GNLDRAKE 313
            H  E C  + +A R+  K+ E   V D++        T+T L    S +  G L +A  
Sbjct: 115 VHTTETCNYMLEALRVDGKLEEMAYVFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPY 174

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
           A   +R  GF  +   YN +I   + +      M +   MI  G   S + Y +L+    
Sbjct: 175 ALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLG 234

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           +  D+     +   M     +P + + T+ +   G+AG  ++A      M   G  PD  
Sbjct: 235 KRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVV 294

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
               +I A      LD A  +  +++    +P   TY  L+D     + ++  +Q   ++
Sbjct: 295 TYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEM 354

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFL 553
            + G  P       L D   +AG   +A   L  +  +        +  +I GLL    L
Sbjct: 355 EKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRL 414

Query: 554 QDAQRVHGLMEAQGFAASERLKVALI 579
            DA  + G ME+ G   +    +  I
Sbjct: 415 DDALELFGNMESLGVKPTAYTYIVFI 440



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 95/225 (42%), Gaps = 1/225 (0%)

Query: 247  VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
            ++S+  F      Y  LID  +K   L +A+++ + M + G  P+     +L++ + KAG
Sbjct: 881  LMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAG 940

Query: 307  NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
              D A   F+ +   G +PD K Y+ ++      G+   G+     +  SG+      Y 
Sbjct: 941  EADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYN 1000

Query: 367  ALLRSFAQCGDVRGAGQITNIMRIEE-FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
             ++    +   +  A  + N M+      P L +   L+   G AG  ++A   ++ + R
Sbjct: 1001 LIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQR 1060

Query: 426  LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATY 470
             G +P+     ++I  Y      + A  +   +   GF P   TY
Sbjct: 1061 AGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTY 1105



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 74/362 (20%), Positives = 139/362 (38%), Gaps = 38/362 (10%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E   + +V   + LI+   K + +++A ++  +M E  + P +VT   L+    K G 
Sbjct: 529 MMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGK 588

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A E FE +   G  P+   +N++        +  L + ++  M+  G       Y  
Sbjct: 589 IQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNT 648

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL---VEA--------------YGQA 410
           ++    + G V+ A    + M+   +   +  CTLL   V+A              Y  A
Sbjct: 649 IIFGLVKNGQVKEAMCFFHQMKKLVYPDFVTLCTLLPGVVKASLIEDAYKIITNFLYNCA 708

Query: 411 GDP------------------DQARSNFDYMIRLGHKPD-DRCTASMIAAYGKKNLLDKA 451
             P                  D A S  + ++  G   D D     +I    K N +  A
Sbjct: 709 DQPANLFWEDLIGSILAEAGIDNAVSFSERLVANGICRDGDSILVPIIRYSCKHNNVSGA 768

Query: 452 LNLLLELEKD-GFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCD 510
             L  +  KD G +P   TY +L+  L    +I  A+ +  ++   G  P       L D
Sbjct: 769 RTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLD 828

Query: 511 MYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV-HGLMEAQGFA 569
            Y ++G   +  +    +   + +        +I+GL+  G + DA  + + LM  + F+
Sbjct: 829 AYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFS 888

Query: 570 AS 571
            +
Sbjct: 889 PT 890


>gi|168022838|ref|XP_001763946.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684951|gb|EDQ71350.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 727

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/326 (22%), Positives = 147/326 (45%), Gaps = 5/326 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAK----ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS 303
           + E+  +  +  Y+ L+D +A+      CL    + LK   + G+ P  VT   L+++Y+
Sbjct: 254 MEEQGLEATLGLYNILMDGYARCHIEAQCLNVFHK-LKARIDTGLSPTAVTYGCLINLYT 312

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363
           K G + +A E  + +++ G   ++  Y+ ++  YV  G      S+ + M  +GIE    
Sbjct: 313 KLGKMMKALEFCKEMKAQGITLNRNTYSMLVDGYVQLGDFANAFSVFEDMSEAGIEPDWV 372

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
            Y  LL++F +   +  A Q+   M+     PT+++   +++ + + GD   A      M
Sbjct: 373 TYNILLKAFCKSRQMTRAIQLLGRMKTRGCSPTIQTYITIIDGFMKTGDVRMAYKTVSEM 432

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483
              G +P+      ++    +   +D+A +++ E+E  G +P   +YT L+     +  I
Sbjct: 433 KLAGCRPNATTYNVIMHNLVQLGQIDRAASVIDEMELAGVQPNFRSYTTLMQGFASIGEI 492

Query: 484 NEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERI 543
             A + L +++E+ + PP     SL     +AG  + A+     +      M    F  +
Sbjct: 493 GLAFKCLKRVNEITQKPPIISYASLLKACCKAGRMQNAIAVTEEMAFAGVPMNNYIFNTL 552

Query: 544 INGLLAGGFLQDAQRVHGLMEAQGFA 569
           ++G    G + +A  +   M  +GF 
Sbjct: 553 LDGWAQRGDMWEAYGIMQKMRQEGFT 578



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/369 (21%), Positives = 157/369 (42%), Gaps = 10/369 (2%)

Query: 218 LQPSRIDW---INLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           L P+ + +   INL  +L +    L F      +  +    N   YS L+D + +     
Sbjct: 297 LSPTAVTYGCLINLYTKLGKMMKALEFCKE---MKAQGITLNRNTYSMLVDGYVQLGDFA 353

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           +A  + + M+E GI PD VT  +L+  + K+  + RA +    +++ G  P  + Y ++I
Sbjct: 354 NAFSVFEDMSEAGIEPDWVTYNILLKAFCKSRQMTRAIQLLGRMKTRGCSPTIQTYITII 413

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
             ++  G  ++    V  M  +G   +   Y  ++ +  Q G +  A  + + M +   Q
Sbjct: 414 DGFMKTGDVRMAYKTVSEMKLAGCRPNATTYNVIMHNLVQLGQIDRAASVIDEMELAGVQ 473

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P   S T L++ +   G+   A      +  +  KP     AS++ A  K   +  A+ +
Sbjct: 474 PNFRSYTTLMQGFASIGEIGLAFKCLKRVNEITQKPPIISYASLLKACCKAGRMQNAIAV 533

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
             E+   G       +  L+D   +   + EA  ++ K+ + G  P      S  +   +
Sbjct: 534 TEEMAFAGVPMNNYIFNTLLDGWAQRGDMWEAYGIMQKMRQEGFTPDIHSYTSFVNACCK 593

Query: 515 AGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572
           AG  +KA + +   E K++ + P+   +  +I+G  +    + A   +  M+A G    +
Sbjct: 594 AGDMQKATETIE--EMKQQDLQPNLQTYTILIHGWTSVSHPEKALICYDEMKAAGLIPDK 651

Query: 573 RLKVALISS 581
            L   +++S
Sbjct: 652 PLYYCIVTS 660



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 74/331 (22%), Positives = 148/331 (44%), Gaps = 9/331 (2%)

Query: 255 TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA 314
           ++V  Y+ LI A+     L+ A   +++M   GI P+  T + ++  Y  +GN++ A++ 
Sbjct: 156 SSVHAYNNLIRAYIMAQNLQGAVSCVEEMEIEGIFPNAATFSAIISGYGSSGNVEAAEKW 215

Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
           F+   S  +  +  +Y+S+I AY  AG  +   +LV  M   G+E +  +Y  L+  +A+
Sbjct: 216 FQRSVSENWNHNVAIYSSIIHAYCKAGNMERAEALVADMEEQGLEATLGLYNILMDGYAR 275

Query: 375 CGDVRGAGQITNIM-----RIEE-FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH 428
           C       Q  N+      RI+    PT  +   L+  Y + G   +A      M   G 
Sbjct: 276 C---HIEAQCLNVFHKLKARIDTGLSPTAVTYGCLINLYTKLGKMMKALEFCKEMKAQGI 332

Query: 429 KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQ 488
             +    + ++  Y +      A ++  ++ + G EP   TY +L+    + + +  A Q
Sbjct: 333 TLNRNTYSMLVDGYVQLGDFANAFSVFEDMSEAGIEPDWVTYNILLKAFCKSRQMTRAIQ 392

Query: 489 LLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLL 548
           LLG++   G +P  +  +++ D + + G  + A + +  ++    +     +  I++ L+
Sbjct: 393 LLGRMKTRGCSPTIQTYITIIDGFMKTGDVRMAYKTVSEMKLAGCRPNATTYNVIMHNLV 452

Query: 549 AGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
             G +  A  V   ME  G   + R    L+
Sbjct: 453 QLGQIDRAASVIDEMELAGVQPNFRSYTTLM 483


>gi|356529503|ref|XP_003533330.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 148/323 (45%), Gaps = 4/323 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L  + FQ N   Y+ LI+   K      A ++L+K++     P++   + ++    K   
Sbjct: 155 LLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQL 214

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A   F  +   G   D   Y+++I  +   G+ K  + L++ M+   I  +   Y  
Sbjct: 215 VSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNI 274

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+ +  + G V+ A  +  +M     +P + + + L++ Y    +  +A+  F+ M  +G
Sbjct: 275 LVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMG 334

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD      +I  + K  ++D+ALNL  E+ +    PG  TY+ L+D L +   I    
Sbjct: 335 VTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVW 394

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIIN 545
            L+ ++ + G+        SL D   + G   +A+    F + K +++ P+   F  +++
Sbjct: 395 DLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIAL--FNKMKDQEIRPNIFTFTILLD 452

Query: 546 GLLAGGFLQDAQRVHGLMEAQGF 568
           GL  GG L+DAQ V   +  +G+
Sbjct: 453 GLCKGGRLKDAQEVFQDLLTKGY 475



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/297 (21%), Positives = 123/297 (41%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++K++D+ AK      A  +  ++   GI PD++T  +L++ +   G +         + 
Sbjct: 62  FNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKIL 121

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G+ PD    N++I      GQ K  +   D ++  G + ++  Y  L+    + GD R
Sbjct: 122 KRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTR 181

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
           GA ++   +     +P +E  + +++A  +     +A   F  M   G   D    +++I
Sbjct: 182 GAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLI 241

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             +  +  L +A+ LL E+      P   TY +LVD L +   + EA+ +L  + +    
Sbjct: 242 YGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVK 301

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDA 556
           P      +L D Y      KKA      +           +  +ING      + +A
Sbjct: 302 PDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEA 358



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 128/273 (46%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           + P+   +  L+D L ++      K    V+ +   + +V  YS L+D +     ++ A+
Sbjct: 265 INPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQ 324

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
            +   M+  G+ PD+ T T+L++ + K   +D A   F+ +      P    Y+S+I   
Sbjct: 325 HVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGL 384

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
             +G+      L+D M   G       Y +L+    + G +  A  + N M+ +E +P +
Sbjct: 385 CKSGRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNI 444

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
            + T+L++   + G    A+  F  ++  G+  +      MI  + K+ LL++AL +L +
Sbjct: 445 FTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSK 504

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           +E +G  P   T+  ++  L +    ++AE+LL
Sbjct: 505 MEDNGCIPNAFTFETIIIALFKKDENDKAEKLL 537



 Score = 42.0 bits (97), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 58/140 (41%)

Query: 412 DPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYT 471
           + D A S F+ M+ + H P       ++ ++ K      A++L   LE  G +P   T  
Sbjct: 39  NVDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLN 98

Query: 472 VLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK 531
           +L++    +  I     +L KI + G  P      +L       G  KKAL     L A+
Sbjct: 99  ILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQ 158

Query: 532 KEQMGPDDFERIINGLLAGG 551
             Q+    +  +ING+   G
Sbjct: 159 GFQLNQVSYATLINGVCKIG 178


>gi|298204410|emb|CBI16890.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 103/221 (46%), Gaps = 1/221 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  ++ LI A  K   +E AE++L +M    I PD+ T   L+ +Y K G    A    
Sbjct: 221 NIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQ 280

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVN-AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
           + +   G  PD   YNS+I  +       +  + L ++M   G+      Y ++LR   +
Sbjct: 281 DRMERGGVSPDIVTYNSLIYGFCREVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCE 340

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
            G ++ A ++ N M   + +P   +C  L+ AY + GD   A      M+  G KPD   
Sbjct: 341 EGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFT 400

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
             ++I  + K + +D A   L E+   GF P  +TY+ LVD
Sbjct: 401 FKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVD 441



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 125/294 (42%), Gaps = 19/294 (6%)

Query: 298 LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG 357
           LV  Y+ +     A + FE +R HGF+P       ++ +   A    +   +   M+  G
Sbjct: 158 LVIFYANSRMTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVG 217

Query: 358 IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
           +  +  I+  L+ +  + GDV  A Q+ N M      P L +   L+  Y + G   +A 
Sbjct: 218 VVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEAL 277

Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKK-NLLDKALNLLLELEKDGFEPGPATYTVLVDW 476
              D M R G  PD     S+I  + ++ N L++AL L   +E +G  PG  TY  ++  
Sbjct: 278 GIQDRMERGGVSPDIVTYNSLIYGFCREVNDLEEALRLREVMEVEGLHPGVVTYNSILRK 337

Query: 477 LGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG-------IEKKALQALGFLE 529
           L     I +A +LL ++SE    P      +L + Y + G       ++KK L+A     
Sbjct: 338 LCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEA----- 392

Query: 530 AKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
                + PD   F+ +I+G      +  A+     M   GF+ S      L+ S
Sbjct: 393 ----GLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDS 442



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 94/211 (44%), Gaps = 6/211 (2%)

Query: 216 ELLQPSRIDWINLLDRLREQNTQLYFKVAELVL---SEESFQTNVRDYSKLIDAHAKENC 272
           E L P  + + ++L +L E+      K A  +L   SE   + +    + LI+A+ K   
Sbjct: 322 EGLHPGVVTYNSILRKLCEEGK---IKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGD 378

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           +  A ++ KKM E G+ PD  T   L+H + K   +D AKE    +   GF P    Y+ 
Sbjct: 379 MGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSW 438

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           ++ +Y +    +  + L D +   G+     +Y AL+R   +   +  A +I  +M+ + 
Sbjct: 439 LVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGKG 498

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
            +      T L  AY +AG    A    D M
Sbjct: 499 MKGDSVVYTSLAYAYFKAGKAIAASDMLDEM 529



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 111/275 (40%), Gaps = 39/275 (14%)

Query: 256 NVRDYSKLIDAHAKE-NCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA 314
           ++  Y+ LI    +E N LE+A R+ + M   G+ P +VT   ++    + G +  A   
Sbjct: 291 DIVTYNSLIYGFCREVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRL 350

Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
              +     +PD    N++I AY   G     M +   M+ +G++  +  + AL+  F +
Sbjct: 351 LNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCK 410

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
             +V  A +    M    F P+  + + LV++Y    D D    N + +IRL   PD   
Sbjct: 411 LHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSY---YDQD----NKEAVIRL---PD--- 457

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
                                 EL + G     + Y  L+  L ++  I  AE++   + 
Sbjct: 458 ----------------------ELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQ 495

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLE 529
             G      +  SL   Y +AG   KA+ A   L+
Sbjct: 496 GKGMKGDSVVYTSLAYAYFKAG---KAIAASDMLD 527



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 89/202 (44%), Gaps = 1/202 (0%)

Query: 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418
           + + +I   L+  +A     + A Q+   MR+  F+P L +CT+L+ +  +A   +    
Sbjct: 149 DSNSQILSWLVIFYANSRMTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWK 208

Query: 419 NFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLG 478
            +  M+R+G  P+      +I A  K   ++KA  LL E+E     P   TY  L+    
Sbjct: 209 VYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYC 268

Query: 479 RLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR-AGIEKKALQALGFLEAKKEQMGP 537
           +  +  EA  +  ++   G +P      SL   + R     ++AL+    +E +    G 
Sbjct: 269 KKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREVNDLEEALRLREVMEVEGLHPGV 328

Query: 538 DDFERIINGLLAGGFLQDAQRV 559
             +  I+  L   G ++DA R+
Sbjct: 329 VTYNSILRKLCEEGKIKDANRL 350



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/126 (23%), Positives = 60/126 (47%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           V+  E     V  Y+ ++    +E  ++DA R+L +M+E  + PD VT   L++ Y K G
Sbjct: 318 VMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIG 377

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           ++  A +  + +   G +PD+  + ++I  +    +       +  M+ +G   S   Y 
Sbjct: 378 DMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYS 437

Query: 367 ALLRSF 372
            L+ S+
Sbjct: 438 WLVDSY 443



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 59/131 (45%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           +  F  +   YS L+D++  ++  E   R+  +++  G+  DI     L+    K   ++
Sbjct: 426 DAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIE 485

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A+  F  ++  G + D  VY S+  AY  AG+      ++D M    +  + +IY    
Sbjct: 486 SAERIFTLMQGKGMKGDSVVYTSLAYAYFKAGKAIAASDMLDEMDKRRLMITLKIYRCFS 545

Query: 370 RSFAQCGDVRG 380
            S+A  G + G
Sbjct: 546 ASYAGDGSILG 556


>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
          Length = 814

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 116/261 (44%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ +++ +A + CL D   +   M  +GI PD  T  VL+  Y+  G LD+A   F
Sbjct: 358 DVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIF 417

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +R HG +PD   Y ++I A    G+    M   + MI  G+   +  Y  L++ F   
Sbjct: 418 NEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTH 477

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A ++ + +        +   + ++    + G    A++ FD  + +G  PD    
Sbjct: 478 GSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVY 537

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
           + ++  Y     ++KAL +   +   G EP    Y  LV+   ++  I+E   L  ++ +
Sbjct: 538 SMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQ 597

Query: 496 LGEAPPFKIQVSLCDMYARAG 516
            G  P   +   + D   +AG
Sbjct: 598 RGIKPSTILYSIIIDGLFQAG 618



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 139/350 (39%), Gaps = 37/350 (10%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIV--PDIVTSTVLVHMYSKAGNLDRAKE 313
           +V  YS L+ +   +     A+ +L+ M E G V  P++V    ++  + K G++++A +
Sbjct: 181 DVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACD 240

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            F+ +   G  PD   YNS++ A   A       + +  M+   +  +   Y  L+  ++
Sbjct: 241 LFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYS 300

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD-- 431
             G  + A ++   MR     P + + ++L+ +  + G   +AR  FD M   G  PD  
Sbjct: 301 STGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVF 360

Query: 432 -----------DRCTASM----------------------IAAYGKKNLLDKALNLLLEL 458
                        C   M                      I AY    +LDKA+ +  E+
Sbjct: 361 SYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEM 420

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
              G +P   TY  ++  L R+  +++A +   ++ + G AP       L   +   G  
Sbjct: 421 RDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSL 480

Query: 519 KKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
            KA + +  +      +    F  IIN L   G + DAQ +  L    G 
Sbjct: 481 LKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGL 530



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 107/236 (45%), Gaps = 2/236 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI        L  A+ ++ ++  NG+  DIV  + +++   K G +  A+  F+   
Sbjct: 467 YNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTV 526

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G  PD  VY+ ++  Y   G+ +  + + D M+++GIE +  +Y  L+  + + G + 
Sbjct: 527 NVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRID 586

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
               +   M     +P+    +++++   QAG    A+  F  M   G    D CT +++
Sbjct: 587 EGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESGIAM-DICTYNIV 645

Query: 440 A-AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
                K    D+A+ L  EL     +    T   ++D + + + + EA+ L   IS
Sbjct: 646 LRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASIS 701



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/278 (21%), Positives = 106/278 (38%), Gaps = 35/278 (12%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +   S   +V   S L+ +  K   +++A  +   M   G  PD+ +  ++++ Y+  G 
Sbjct: 315 MRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGC 374

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L    + F+ +   G  PD   +N +I AY N                            
Sbjct: 375 LVDMTDLFDLMLGDGIAPDFYTFNVLIKAYAN---------------------------- 406

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
                  CG +  A  I N MR    +P + +   ++ A  + G  D A   F+ MI  G
Sbjct: 407 -------CGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQG 459

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD      +I  +     L KA  L+ E+  +G       ++ +++ L +L  + +A+
Sbjct: 460 VAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQ 519

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
            +      +G  P   +   L D Y   G  +KAL+  
Sbjct: 520 NIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVF 557



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/230 (19%), Positives = 94/230 (40%), Gaps = 35/230 (15%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + +   + +V  Y  +I A  +   ++DA     +M + G+ PD      L+  +   G+
Sbjct: 420 MRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGS 479

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L +AKE    + ++G   D   ++S+I      G+     ++ D+ +  G+     +Y  
Sbjct: 480 LLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVY-- 537

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
                                            ++L++ Y   G  ++A   FD M+  G
Sbjct: 538 ---------------------------------SMLMDGYCLVGKMEKALRVFDAMVSAG 564

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
            +P+     +++  Y K   +D+ L+L  E+ + G +P    Y++++D L
Sbjct: 565 IEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGL 614



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 106/278 (38%), Gaps = 36/278 (12%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS L+D +     +E A R+   M   GI P++V    LV+ Y K G +D     F  + 
Sbjct: 537 YSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREML 596

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF--AQCGD 377
             G +P   +Y+ +I     AG+          M  SGI      Y  +LR     +C D
Sbjct: 597 QRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESGIAMDICTYNIVLRGLFKNRCFD 656

Query: 378 --------VRGAGQITNIM-------------RIEE------------FQPTLESCTLLV 404
                   +R      NI+             R+EE              P++ + ++++
Sbjct: 657 EAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIMI 716

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
               + G  ++A   F  M   G +P+ R    ++    KKN + +A   L ++++  F 
Sbjct: 717 TNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFS 776

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLL-GKISELGEAPP 501
               T  +LVD         E  + L  K   L EA P
Sbjct: 777 LEHLTTMLLVDLFSSKGTCREHIRFLPAKYHFLAEASP 814



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 43/207 (20%), Positives = 92/207 (44%), Gaps = 8/207 (3%)

Query: 211 LAEWKELLQ----PSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDA 266
           L+ ++E+LQ    PS I +  ++D L +    +  KV    ++E     ++  Y+ ++  
Sbjct: 589 LSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESGIAMDICTYNIVLRG 648

Query: 267 HAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPD 326
             K  C ++A  + K++    +  +I+T   ++    +   ++ AK+ F S+      P 
Sbjct: 649 LFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPS 708

Query: 327 KKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITN 386
              Y+ MI   +  G  +    +   M  +G E +  +   ++R   +  ++  AG   +
Sbjct: 709 VVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAGAYLS 768

Query: 387 IMRIEEFQPTLESCT--LLVEAYGQAG 411
             +I+E   +LE  T  LLV+ +   G
Sbjct: 769 --KIDERNFSLEHLTTMLLVDLFSSKG 793


>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Cucumis sativus]
          Length = 857

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/329 (21%), Positives = 153/329 (46%), Gaps = 8/329 (2%)

Query: 223 IDWINLLDRLREQNTQL--YFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERIL 280
           + +  ++    ++N Q+  Y    E++  ++    ++  ++KLI    K+  ++++E++ 
Sbjct: 182 VSYCAVISGFYKENCQIEAYHLFDEML--KQGICPDILTFNKLIHVLCKKGNVQESEKLF 239

Query: 281 KKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNA 340
            K+ + G+ P++ T  + +    + G +D A    ES+ S G  PD   YN++I  +   
Sbjct: 240 SKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKH 299

Query: 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
            +       +  M+ SG+E +E  Y  ++  F + G ++ A +I      + F P   + 
Sbjct: 300 SKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTY 359

Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
           + L+      GD ++A + F   +  G K       +++    K+ L+ +AL L+ ++ +
Sbjct: 360 SSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMME 419

Query: 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKK 520
            G  P   TY ++V+ L ++  +++A  +L      G  P      +L D Y +     K
Sbjct: 420 HGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDK 479

Query: 521 ALQALGFLEAKKEQMGPD--DFERIINGL 547
           A++ L  + +    + PD   +  ++NGL
Sbjct: 480 AIEILDTMLS--HGITPDVITYNTLLNGL 506



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 137/322 (42%), Gaps = 6/322 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +  E    +V  Y+ LI    K + L +AE  L KM  +G+ P+  T   +++ + KAG 
Sbjct: 277 IVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGM 336

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A +        GF PD+  Y+S+I    N G     M++    +  G + S  +Y  
Sbjct: 337 MQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNT 396

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L++  ++ G V  A Q+   M      P + +  L+V    + G    A    +  I  G
Sbjct: 397 LVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKG 456

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD     ++I  Y K+  +DKA+ +L  +   G  P   TY  L++ L + + ++   
Sbjct: 457 CIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVV 516

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALG-FLEAKKEQMGPD--DFERII 544
                + E G  P       L + + +   ++K  +A+  F E K   + PD      +I
Sbjct: 517 DTFKAMLEKGCTPNIITYNILIESFCK---DRKVSEAMELFKEMKTRGLTPDIVTLCTLI 573

Query: 545 NGLLAGGFLQDAQRVHGLMEAQ 566
            GL + G L  A  +   +E +
Sbjct: 574 CGLCSNGELDKAYELFVTIEKE 595



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 114/289 (39%), Gaps = 36/289 (12%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E     ++  Y+ +++   K  CL DA  IL      G +PDI T   L+  Y K  N
Sbjct: 417 MMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRN 476

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D+A E  +++ SHG  PD   YN+++     A +    +     M+  G   +   Y  
Sbjct: 477 MDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNI 536

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA----------- 416
           L+ SF +   V  A ++   M+     P + +   L+      G+ D+A           
Sbjct: 537 LIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEY 596

Query: 417 -----RSNFDYMI-------------RLGHK-------PDDRCTASMIAAYGKKNLLDKA 451
                 + F+ MI             +L HK       PD+     MI +Y K   +D A
Sbjct: 597 KFSYSTAIFNIMINAFCEKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLA 656

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
              LLE    G  P   T   +++ L     ++EA  ++  + + G  P
Sbjct: 657 HTFLLENISKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQNGIVP 705



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 63/322 (19%), Positives = 138/322 (42%), Gaps = 4/322 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  ++  + ++  +++A  + ++M+     P + +   ++++  + G   +A + +  ++
Sbjct: 79  YIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMK 138

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  PD   +   + ++   G+P   + L++ M   G E +   Y A++  F +     
Sbjct: 139 DIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQI 198

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  + + M  +   P + +   L+    + G+  ++   F  +++ G  P+       I
Sbjct: 199 EAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFI 258

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
               +K  +D+A  LL  +  +G  P   +Y  L+    +   + EAE  L K+   G  
Sbjct: 259 QGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVE 318

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF--ERIINGLLAGGFLQDAQ 557
           P      ++ + + +AG+ + A + L   +A  +   PD+F    +INGL   G +  A 
Sbjct: 319 PNEFTYNTIINGFCKAGMMQNADKILR--DAMFKGFIPDEFTYSSLINGLCNDGDMNRAM 376

Query: 558 RVHGLMEAQGFAASERLKVALI 579
            V      +GF  S  L   L+
Sbjct: 377 AVFYEAMEKGFKHSIILYNTLV 398



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 83/370 (22%), Positives = 150/370 (40%), Gaps = 17/370 (4%)

Query: 218 LQPSRIDWINLLDRLREQNTQLY-FKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           LQP  +  +     +R QN  L   K+   V +E+ F+  +  Y  +I+        E  
Sbjct: 5   LQPKHVAAV-----IRYQNDPLNALKMFNQVKTEDGFKHTLETYKCMIEKLGLHGKFEAM 59

Query: 277 ERILKKMNENGIVPDIVTSTVLVHM---YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           E +L +M +N  V   +   V + +   Y + G +  A   FE +  +  +P  + YN++
Sbjct: 60  EDVLAEMRKN--VDSKMLEGVYIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAI 117

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           +   V  G       +   M   GI      +   ++SF   G    A ++ N M  +  
Sbjct: 118 MNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGC 177

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
           +    S   ++  + +     +A   FD M++ G  PD      +I    KK  + ++  
Sbjct: 178 EFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEK 237

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
           L  ++ K G  P   T+ + +  L R   I+EA +LL  I   G  P      +L   + 
Sbjct: 238 LFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFC 297

Query: 514 RAGIEKKALQALGFLEAK-KEQMGPDDF--ERIINGLLAGGFLQDAQRVHGLMEAQGFAA 570
           +     K ++A  +L       + P++F    IING    G +Q+A ++      +GF  
Sbjct: 298 K---HSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIP 354

Query: 571 SERLKVALIS 580
            E    +LI+
Sbjct: 355 DEFTYSSLIN 364



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 64/340 (18%), Positives = 133/340 (39%), Gaps = 37/340 (10%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V+ Y+ +++   +      A ++  +M + GI PD+ T T+ +  +   G    A    
Sbjct: 110 SVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLL 169

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
            ++   G + +   Y ++I  +           L D M+  GI      +  L+    + 
Sbjct: 170 NNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKK 229

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G+V+ + ++ + +      P L +  + ++   + G  D+A    + ++  G  PD    
Sbjct: 230 GNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISY 289

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I  + K + L +A   L ++   G EP   TY  +++   +  ++  A+++L     
Sbjct: 290 NTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMF 349

Query: 496 LGEAPP-------------------------------FKIQVSLCDMYARAGIEKK--AL 522
            G  P                                FK  + L +   + G+ K+   L
Sbjct: 350 KGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVK-GLSKQGLVL 408

Query: 523 QALGFLEAKKEQ-MGPD--DFERIINGLLAGGFLQDAQRV 559
           QAL  ++   E    PD   +  ++NGL   G L DA  +
Sbjct: 409 QALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGI 448



 Score = 40.4 bits (93), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 76/176 (43%), Gaps = 11/176 (6%)

Query: 192 KLITDKIL--SLEKEEDPSPLLAEWKEL----LQPSRIDWINLLDRLREQNTQLYFKVAE 245
            +IT  IL  S  K+   S  +  +KE+    L P  +    L+  L   N +L  K  E
Sbjct: 530 NIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLC-SNGELD-KAYE 587

Query: 246 LVLS---EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMY 302
           L ++   E  F  +   ++ +I+A  ++  +  AE++  KM  +   PD  T  V++  Y
Sbjct: 588 LFVTIEKEYKFSYSTAIFNIMINAFCEKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSY 647

Query: 303 SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
            K GN+D A        S G  P       ++       +    + ++++M+ +GI
Sbjct: 648 CKTGNIDLAHTFLLENISKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQNGI 703


>gi|449462001|ref|XP_004148730.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic-like [Cucumis sativus]
 gi|449521148|ref|XP_004167592.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic-like [Cucumis sativus]
          Length = 710

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 103/430 (23%), Positives = 186/430 (43%), Gaps = 13/430 (3%)

Query: 160 LSDPKWTEVAEKIHERGEMILPEEPK------PITGKCKLITDKILSLEKEEDPSPLLAE 213
           LS PK T V     +R  + L  + +      P     K    K+ + +  +D S  +A 
Sbjct: 84  LSKPKSTWVNPTKPKRSVLSLQRQKRSSYSYNPKMRDLKSFAHKLNACDSSDDAS-FIAA 142

Query: 214 WKELLQP-SRIDWINLLDRLRE-QNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKEN 271
            +E+  P ++ + + +L+ LR  Q T L+F     + S+  F      Y+  + +     
Sbjct: 143 LEEIPHPPTKENALLILNSLRPWQKTHLFFN---WIKSQNLFPMETIFYNVAMKSLRYGR 199

Query: 272 CLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYN 331
             +  E +  +M   GI  D +T + ++    K    D+A E FE +   G  PD+  Y+
Sbjct: 200 QFQLIEDLANEMISAGIELDNITYSTIITCAKKCSRFDKAMEWFERMYKTGLMPDEVTYS 259

Query: 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391
           +++  Y N G+ +  +SL +    SG       +  L + F + GD  G   +   M+  
Sbjct: 260 AILDVYANLGKVEEVLSLYERGRASGWTPDPYTFSVLGKMFGEAGDYDGIMYVLQEMKSI 319

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
           E QP L     L++A G+AG P  ARS FD M+  G  P+++   +++  YGK      A
Sbjct: 320 EMQPNLVVYNTLLDAMGKAGKPGFARSLFDEMVESGITPNEKTLTALVKIYGKARWARDA 379

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQ-VSLCD 510
           L+L   +  +G+      Y  L++    L L  EAE L  ++ +   + P      ++ +
Sbjct: 380 LDLWERMRSNGWPMDFILYNTLLNMCADLGLEEEAETLFEEMKKSKHSRPDSWSYTAMLN 439

Query: 511 MYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAA 570
           +Y   G  K++++    +     ++       +I  L   G + D  RV  +   +G   
Sbjct: 440 IYGSGGNVKRSMELFEEMLELGVEINVMCCTCLIQCLGKSGRIDDLVRVFNVSVQKGIKP 499

Query: 571 SERLKVALIS 580
            +RL   L+S
Sbjct: 500 DDRLCGCLLS 509


>gi|414868449|tpg|DAA47006.1| TPA: hypothetical protein ZEAMMB73_127498 [Zea mays]
          Length = 870

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 138/308 (44%), Gaps = 5/308 (1%)

Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG-NLDR 310
           S+   V  +S LI A+A+     +A  +L+ M   G+ P  V+   ++    K G +L  
Sbjct: 239 SYGNTVFAHSALISAYARSGLATEAMGVLESMKGAGLRPTTVSYNAVIDACGKGGVDLRF 298

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
               F  +   G  PD+K +NS++ A   AG  +   ++ D MI  G  R    Y   + 
Sbjct: 299 TLGYFRQMLQDGLCPDRKTFNSLLAACSRAGHLEDARTVFDEMIHLGSGRDIYTYNTFVD 358

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
           +  +CG++  A Q+   M     +P + + + L++ + +    D+A    + M  L  + 
Sbjct: 359 AICKCGNMGLALQVVLDMEANNAKPNVVTYSTLMDGFSKLEKYDEALKLREKMKSLRIQL 418

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           D  C  +++A Y K    D+   +  E+EK G E    TY  L++  G+   ++    L+
Sbjct: 419 DRVCYNTLLAIYVKTGKYDEIATVCEEMEKLGIEKDTVTYNSLINGYGKQGRLDMVAFLV 478

Query: 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLL 548
             +   G AP      +L D+Y++AG+   A     +L+ K+  +  D   F   I+ L 
Sbjct: 479 QDMRAQGVAPSVLTYSTLIDIYSKAGMHGDAFNV--YLDFKESGLKADVVLFSSFIDTLA 536

Query: 549 AGGFLQDA 556
             G ++ A
Sbjct: 537 KNGLVECA 544



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 117/242 (48%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           ++  Y+  +DA  K   +  A +++  M  N   P++VT + L+  +SK    D A +  
Sbjct: 349 DIYTYNTFVDAICKCGNMGLALQVVLDMEANNAKPNVVTYSTLMDGFSKLEKYDEALKLR 408

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E ++S   Q D+  YN+++  YV  G+     ++ + M   GIE+    Y +L+  + + 
Sbjct: 409 EKMKSLRIQLDRVCYNTLLAIYVKTGKYDEIATVCEEMEKLGIEKDTVTYNSLINGYGKQ 468

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +     +   MR +   P++ + + L++ Y +AG    A + +      G K D    
Sbjct: 469 GRLDMVAFLVQDMRAQGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKADVVLF 528

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
           +S I    K  L++ AL+LL E+ K G +P   TY  ++D  G+ ++  E +  +G +  
Sbjct: 529 SSFIDTLAKNGLVECALSLLDEMMKMGIKPNVVTYNTIIDAFGKSKIFTEEDSDIGDMGI 588

Query: 496 LG 497
           +G
Sbjct: 589 VG 590



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 67/341 (19%), Positives = 140/341 (41%), Gaps = 15/341 (4%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAEL-VLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L+P+ + +  ++D   +    L F +     + ++    + + ++ L+ A ++   LEDA
Sbjct: 275 LRPTTVSYNAVIDACGKGGVDLRFTLGYFRQMLQDGLCPDRKTFNSLLAACSRAGHLEDA 334

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
             +  +M   G   DI T    V    K GN+  A +    + ++  +P+   Y++++  
Sbjct: 335 RTVFDEMIHLGSGRDIYTYNTFVDAICKCGNMGLALQVVLDMEANNAKPNVVTYSTLMDG 394

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR---IEEF 393
           +    +    + L + M +  I+     Y  LL  + + G       +   M    IE+ 
Sbjct: 395 FSKLEKYDEALKLREKMKSLRIQLDRVCYNTLLAIYVKTGKYDEIATVCEEMEKLGIEKD 454

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
             T  S   L+  YG+ G  D        M   G  P     +++I  Y K  +   A N
Sbjct: 455 TVTYNS---LINGYGKQGRLDMVAFLVQDMRAQGVAPSVLTYSTLIDIYSKAGMHGDAFN 511

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
           + L+ ++ G +     ++  +D L +  L+  A  LL ++ ++G  P      ++ D + 
Sbjct: 512 VYLDFKESGLKADVVLFSSFIDTLAKNGLVECALSLLDEMMKMGIKPNVVTYNTIIDAFG 571

Query: 514 RAGI---EKKALQALGFLEAKKEQMGPDDFERIINGLLAGG 551
           ++ I   E   +  +G +     Q+      R+ N ++ GG
Sbjct: 572 KSKIFTEEDSDIGDMGIVGVYGGQV-----VRVTNPVIRGG 607



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 96/202 (47%), Gaps = 1/202 (0%)

Query: 296 TVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMIT 355
           T  +    K G  D A+ AF++  +  +      ++++I AY  +G     M +++ M  
Sbjct: 213 TAAIGALGKMGRPDLARRAFDTGIAGSYGNTVFAHSALISAYARSGLATEAMGVLESMKG 272

Query: 356 SGIERSEEIYLALLRSFAQCG-DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPD 414
           +G+  +   Y A++ +  + G D+R        M  +   P  ++   L+ A  +AG  +
Sbjct: 273 AGLRPTTVSYNAVIDACGKGGVDLRFTLGYFRQMLQDGLCPDRKTFNSLLAACSRAGHLE 332

Query: 415 QARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
            AR+ FD MI LG   D     + + A  K   +  AL ++L++E +  +P   TY+ L+
Sbjct: 333 DARTVFDEMIHLGSGRDIYTYNTFVDAICKCGNMGLALQVVLDMEANNAKPNVVTYSTLM 392

Query: 475 DWLGRLQLINEAEQLLGKISEL 496
           D   +L+  +EA +L  K+  L
Sbjct: 393 DGFSKLEKYDEALKLREKMKSL 414



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 90/196 (45%), Gaps = 5/196 (2%)

Query: 182 EEPKPITGKCKLITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLREQNTQLY 240
              KP       + D    LEK ++   L  + K L +Q  R+ +  LL    +  T  Y
Sbjct: 379 NNAKPNVVTYSTLMDGFSKLEKYDEALKLREKMKSLRIQLDRVCYNTLLAIYVK--TGKY 436

Query: 241 FKVAELV--LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVL 298
            ++A +   + +   + +   Y+ LI+ + K+  L+    +++ M   G+ P ++T + L
Sbjct: 437 DEIATVCEEMEKLGIEKDTVTYNSLINGYGKQGRLDMVAFLVQDMRAQGVAPSVLTYSTL 496

Query: 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
           + +YSKAG    A   +   +  G + D  +++S I      G  +  +SL+D M+  GI
Sbjct: 497 IDIYSKAGMHGDAFNVYLDFKESGLKADVVLFSSFIDTLAKNGLVECALSLLDEMMKMGI 556

Query: 359 ERSEEIYLALLRSFAQ 374
           + +   Y  ++ +F +
Sbjct: 557 KPNVVTYNTIIDAFGK 572


>gi|356574297|ref|XP_003555285.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Glycine max]
          Length = 794

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 129/274 (47%), Gaps = 1/274 (0%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F+ +   Y+ L+D + K    ++A  +LK+M  N   P +VT   LV  Y + G L+ A 
Sbjct: 281 FRPDAVTYNALLDVYGKSRRPKEAMEVLKQMESNSFRPSVVTYNSLVSAYVRGGLLEDAL 340

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
                +   G +PD   Y +++  +VNAG+ +L M + + M   G + +   + AL++ +
Sbjct: 341 VLKRKMVDKGIKPDVYTYTTLLSGFVNAGKEELAMEVFEEMRKVGCKPNICTFNALIKMY 400

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
              G      ++   +++ +  P + +   L+  +GQ G   +    F+ M R    P+ 
Sbjct: 401 GDRGKFEEMVKVFKEIKVCKCSPDIVTWNTLLAVFGQNGMDSEVSGVFEEMKRSRFAPER 460

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               ++I+AYG+    D+A+     + + G  P  +TY  ++  L R  L  ++E++L +
Sbjct: 461 DTFNTLISAYGRCGSFDQAMAAYKRMLEAGVSPDLSTYNAVLATLARGGLWEQSEKVLAE 520

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALG 526
           + + G  P      SL   YA  G E + + AL 
Sbjct: 521 MKDGGCKPNEVTYSSLLHAYAN-GREVERMNALA 553



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 110/227 (48%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +   SF+ +V  Y+ L+ A+ +   LEDA  + +KM + GI PD+ T T L+  +  AG 
Sbjct: 311 MESNSFRPSVVTYNSLVSAYVRGGLLEDALVLKRKMVDKGIKPDVYTYTTLLSGFVNAGK 370

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            + A E FE +R  G +P+   +N++I  Y + G+ +  + +   +           +  
Sbjct: 371 EELAMEVFEEMRKVGCKPNICTFNALIKMYGDRGKFEEMVKVFKEIKVCKCSPDIVTWNT 430

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           LL  F Q G       +   M+   F P  ++   L+ AYG+ G  DQA + +  M+  G
Sbjct: 431 LLAVFGQNGMDSEVSGVFEEMKRSRFAPERDTFNTLISAYGRCGSFDQAMAAYKRMLEAG 490

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
             PD     +++A   +  L +++  +L E++  G +P   TY+ L+
Sbjct: 491 VSPDLSTYNAVLATLARGGLWEQSEKVLAEMKDGGCKPNEVTYSSLL 537



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/379 (21%), Positives = 163/379 (43%), Gaps = 42/379 (11%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK--- 304
           L  + F+ +V  Y+ LI A+A      DA ++  KM E G  P ++T   ++++Y K   
Sbjct: 170 LEADGFEVDVYGYTSLITAYANNKKYRDALKVFGKMKEVGCEPTLITYNAILNVYGKMGM 229

Query: 305 --------------------------------AGNL-DRAKEAFESLRSHGFQPDKKVYN 331
                                           AG+L + A + FE ++  GF+PD   YN
Sbjct: 230 PWAKIIALVQDMKCHGLAPDLCTYNTLISCCRAGSLYEEALDLFEEIKVAGFRPDAVTYN 289

Query: 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391
           +++  Y  + +PK  M ++  M ++    S   Y +L+ ++ + G +  A  +   M  +
Sbjct: 290 ALLDVYGKSRRPKEAMEVLKQMESNSFRPSVVTYNSLVSAYVRGGLLEDALVLKRKMVDK 349

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
             +P + + T L+  +  AG  + A   F+ M ++G KP+     ++I  YG +   ++ 
Sbjct: 350 GIKPDVYTYTTLLSGFVNAGKEELAMEVFEEMRKVGCKPNICTFNALIKMYGDRGKFEEM 409

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
           + +  E++     P   T+  L+   G+  + +E   +  ++     AP      +L   
Sbjct: 410 VKVFKEIKVCKCSPDIVTWNTLLAVFGQNGMDSEVSGVFEEMKRSRFAPERDTFNTLISA 469

Query: 512 YARAGIEKKALQALG-FLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
           Y R G   +A+ A    LEA    + PD   +  ++  L  GG  + +++V   M+  G 
Sbjct: 470 YGRCGSFDQAMAAYKRMLEAG---VSPDLSTYNAVLATLARGGLWEQSEKVLAEMKDGGC 526

Query: 569 AASERLKVALISSQTFNRQ 587
             +E    +L+ +    R+
Sbjct: 527 KPNEVTYSSLLHAYANGRE 545



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 59/282 (20%), Positives = 118/282 (41%), Gaps = 35/282 (12%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E     ++  Y+ ++   A+    E +E++L +M + G  P+ VT + L+H Y+    ++
Sbjct: 488 EAGVSPDLSTYNAVLATLARGGLWEQSEKVLAEMKDGGCKPNEVTYSSLLHAYANGREVE 547

Query: 310 R-----------------------------------AKEAFESLRSHGFQPDKKVYNSMI 334
           R                                    + AF   R  G  PD    N+M+
Sbjct: 548 RMNALAEEIYSGTIKTHAVLLKTLVLVNSKVDLLVETERAFLEFRKRGISPDVTTSNAML 607

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
             Y           +++ M  SG+  S   Y +L+  +++  +   + QI   +  +  +
Sbjct: 608 SIYGRKKMVPKANEILNFMYESGLTLSLTSYNSLMYMYSRTENFHKSEQIFREILDKGIE 667

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P + S  +++ AY +    D+A+   + M      PD     + IAAY   ++  +A+++
Sbjct: 668 PDVISYNIVIYAYCRNDMMDEAKRIIEEMKVPAPVPDVVTYNTFIAAYAADSMFVEAIDV 727

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
           +  + K G +P   TY  +VDW  +L+L +EA   +  + +L
Sbjct: 728 IRYMIKQGCKPNHNTYNSIVDWYCKLKLRDEACSFVQNLGDL 769



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 107/244 (43%), Gaps = 5/244 (2%)

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           V+V +  K G + RA     +L + GF+ D   Y S+I AY N  + +  + +   M   
Sbjct: 149 VIVSILGKTGRVSRAASLLHNLEADGFEVDVYGYTSLITAYANNKKYRDALKVFGKMKEV 208

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNI--MRIEEFQPTLESCTLLVEAYGQAGDPD 414
           G E +   Y A+L  + + G +  A  I  +  M+     P L +   L+         +
Sbjct: 209 GCEPTLITYNAILNVYGKMG-MPWAKIIALVQDMKCHGLAPDLCTYNTLISCCRAGSLYE 267

Query: 415 QARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
           +A   F+ +   G +PD     +++  YGK     +A+ +L ++E + F P   TY  LV
Sbjct: 268 EALDLFEEIKVAGFRPDAVTYNALLDVYGKSRRPKEAMEVLKQMESNSFRPSVVTYNSLV 327

Query: 475 DWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ 534
               R  L+ +A  L  K+ + G  P      +L   +  AG E+ A++   F E +K  
Sbjct: 328 SAYVRGGLLEDALVLKRKMVDKGIKPDVYTYTTLLSGFVNAGKEELAMEV--FEEMRKVG 385

Query: 535 MGPD 538
             P+
Sbjct: 386 CKPN 389



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/320 (19%), Positives = 131/320 (40%), Gaps = 35/320 (10%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++ LI A+ +    + A    K+M E G+ PD+ T   ++   ++ G  +++++    ++
Sbjct: 463 FNTLISAYGRCGSFDQAMAAYKRMLEAGVSPDLSTYNAVLATLARGGLWEQSEKVLAEMK 522

Query: 320 SHGFQPDKKVYNSMIMAYVN---------------AGQPK----------LGMSLVDMMI 354
             G +P++  Y+S++ AY N               +G  K          L  S VD+++
Sbjct: 523 DGGCKPNEVTYSSLLHAYANGREVERMNALAEEIYSGTIKTHAVLLKTLVLVNSKVDLLV 582

Query: 355 TS----------GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
            +          GI        A+L  + +   V  A +I N M       +L S   L+
Sbjct: 583 ETERAFLEFRKRGISPDVTTSNAMLSIYGRKKMVPKANEILNFMYESGLTLSLTSYNSLM 642

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
             Y +  +  ++   F  ++  G +PD      +I AY + +++D+A  ++ E++     
Sbjct: 643 YMYSRTENFHKSEQIFREILDKGIEPDVISYNIVIYAYCRNDMMDEAKRIIEEMKVPAPV 702

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQA 524
           P   TY   +       +  EA  ++  + + G  P      S+ D Y +  +  +A   
Sbjct: 703 PDVVTYNTFIAAYAADSMFVEAIDVIRYMIKQGCKPNHNTYNSIVDWYCKLKLRDEACSF 762

Query: 525 LGFLEAKKEQMGPDDFERII 544
           +  L     Q+  D+  R++
Sbjct: 763 VQNLGDLDPQISEDEKSRLL 782



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/268 (22%), Positives = 114/268 (42%), Gaps = 11/268 (4%)

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A  +L  +  +G   D+   T L+  Y+       A + F  ++  G +P    YN+++ 
Sbjct: 163 AASLLHNLEADGFEVDVYGYTSLITAYANNKKYRDALKVFGKMKEVGCEPTLITYNAILN 222

Query: 336 AYVNAGQP--KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
            Y   G P  K+ ++LV  M   G+      Y  L+           A  +   +++  F
Sbjct: 223 VYGKMGMPWAKI-IALVQDMKCHGLAPDLCTYNTLISCCRAGSLYEEALDLFEEIKVAGF 281

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
           +P   +   L++ YG++  P +A      M     +P      S+++AY +  LL+ AL 
Sbjct: 282 RPDAVTYNALLDVYGKSRRPKEAMEVLKQMESNSFRPSVVTYNSLVSAYVRGGLLEDALV 341

Query: 454 LLLELEKDGFEPGPATYTVLVDWL---GRLQLINEAEQLLGKISELGEAPPFKIQVSLCD 510
           L  ++   G +P   TYT L+      G+ +L   A ++  ++ ++G  P      +L  
Sbjct: 342 LKRKMVDKGIKPDVYTYTTLLSGFVNAGKEEL---AMEVFEEMRKVGCKPNICTFNALIK 398

Query: 511 MYARAGIEKKALQALGFLEAKKEQMGPD 538
           MY   G  ++ ++   F E K  +  PD
Sbjct: 399 MYGDRGKFEEMVKV--FKEIKVCKCSPD 424



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 90/216 (41%), Gaps = 4/216 (1%)

Query: 345 LGMSLVDMMITSGIERS---EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCT 401
           L +SL D + T     S     +   ++    + G V  A  + + +  + F+  +   T
Sbjct: 124 LALSLFDFIRTRNDRVSLLNGSVIAVIVSILGKTGRVSRAASLLHNLEADGFEVDVYGYT 183

Query: 402 LLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL-LDKALNLLLELEK 460
            L+ AY        A   F  M  +G +P      +++  YGK  +   K + L+ +++ 
Sbjct: 184 SLITAYANNKKYRDALKVFGKMKEVGCEPTLITYNAILNVYGKMGMPWAKIIALVQDMKC 243

Query: 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKK 520
            G  P   TY  L+       L  EA  L  +I   G  P      +L D+Y ++   K+
Sbjct: 244 HGLAPDLCTYNTLISCCRAGSLYEEALDLFEEIKVAGFRPDAVTYNALLDVYGKSRRPKE 303

Query: 521 ALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDA 556
           A++ L  +E+   +     +  +++  + GG L+DA
Sbjct: 304 AMEVLKQMESNSFRPSVVTYNSLVSAYVRGGLLEDA 339



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 88/225 (39%), Gaps = 43/225 (19%)

Query: 242 KVAELVLSEESF--------QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIV 293
           KV  LV +E +F          +V   + ++  + ++  +  A  IL  M E+G+   + 
Sbjct: 577 KVDLLVETERAFLEFRKRGISPDVTTSNAMLSIYGRKKMVPKANEILNFMYESGLTLSLT 636

Query: 294 TSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMM 353
           +   L++MYS+  N  ++++ F  +   G +PD   YN +I AY             DMM
Sbjct: 637 SYNSLMYMYSRTENFHKSEQIFREILDKGIEPDVISYNIVIYAYCRN----------DMM 686

Query: 354 ITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDP 413
                                      A +I   M++    P + +    + AY      
Sbjct: 687 -------------------------DEAKRIIEEMKVPAPVPDVVTYNTFIAAYAADSMF 721

Query: 414 DQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
            +A     YMI+ G KP+     S++  Y K  L D+A + +  L
Sbjct: 722 VEAIDVIRYMIKQGCKPNHNTYNSIVDWYCKLKLRDEACSFVQNL 766


>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62930, chloroplastic; Flags: Precursor
 gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 115/251 (45%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E     NV  +S LIDA  KE  L +AE++  +M +  I PDI T + L++ +     LD
Sbjct: 318 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 377

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            AK  FE + S    P+   YN++I  +  A + + GM L   M   G+  +   Y  L+
Sbjct: 378 EAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLI 437

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
           +   Q GD   A +I   M  +   P + + ++L++   + G  ++A   F+Y+ +   +
Sbjct: 438 QGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKME 497

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD      MI    K   ++   +L   L   G +P    YT ++    R  L  EA+ L
Sbjct: 498 PDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADAL 557

Query: 490 LGKISELGEAP 500
             ++ E G  P
Sbjct: 558 FREMKEDGTLP 568



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 80/369 (21%), Positives = 157/369 (42%), Gaps = 14/369 (3%)

Query: 219 QPSRIDWINLLDRLREQNTQLYFKVAELV-----LSEESFQTNVRDYSKLIDAHAKENCL 273
           QP+ + +  L+  L   N     K +E V     +     Q ++  Y  +++   K   +
Sbjct: 182 QPNTVTFNTLIHGLFLHN-----KASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDI 236

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           + A  +LKKM +  I  D+V  T ++       N++ A   F  + + G +P+   YNS+
Sbjct: 237 DLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSL 296

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           I    N G+      L+  MI   I  +   + AL+ +F + G +  A ++ + M     
Sbjct: 297 IRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI 356

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
            P + + + L+  +      D+A+  F+ MI     P+     ++I  + K   +++ + 
Sbjct: 357 DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGME 416

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
           L  E+ + G      TY  L+  L +    + A+++  K+   G  P       L D   
Sbjct: 417 LFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLC 476

Query: 514 RAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAAS 571
           + G  +KAL    +L+  K +M PD   +  +I G+   G ++D   +   +  +G   +
Sbjct: 477 KYGKLEKALVVFEYLQ--KSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPN 534

Query: 572 ERLKVALIS 580
             +   +IS
Sbjct: 535 VIIYTTMIS 543



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/288 (21%), Positives = 120/288 (41%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           L+DA  +  +M ++  +P IV    L+   +K    D      E +++     D   YN 
Sbjct: 61  LDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNI 120

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I  +    Q  L ++++  M+  G E       +LL  +     +  A  + + M + E
Sbjct: 121 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVME 180

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
           +QP   +   L+          +A +  D M+  G +PD     +++    K+  +D AL
Sbjct: 181 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLAL 240

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
           +LL ++EK   E     YT ++D L   + +N+A  L  ++   G  P      SL    
Sbjct: 241 SLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCL 300

Query: 513 ARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVH 560
              G    A + L  +  +K       F  +I+  +  G L +A++++
Sbjct: 301 CNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLY 348



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 110/254 (43%), Gaps = 41/254 (16%)

Query: 221 SRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERIL 280
           S I+   + DRL E          EL++S++ F  NV  Y+ LI    K   +E+   + 
Sbjct: 365 SLINGFCMHDRLDEAKHMF-----ELMISKDCFP-NVVTYNTLIKGFCKAKRVEEGMELF 418

Query: 281 KKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNA 340
           ++M++ G+V + VT   L+    +AG+ D A++ F+ + S G  PD              
Sbjct: 419 REMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPD-------------- 464

Query: 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
                       +IT         Y  LL    + G +  A  +   ++  + +P + + 
Sbjct: 465 ------------IIT---------YSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTY 503

Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
            +++E   +AG  +     F  +   G KP+     +MI+ + +K L ++A  L  E+++
Sbjct: 504 NIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKE 563

Query: 461 DGFEPGPATYTVLV 474
           DG  P   TY  L+
Sbjct: 564 DGTLPNSGTYNTLI 577



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 81/364 (22%), Positives = 144/364 (39%), Gaps = 60/364 (16%)

Query: 207 PSPLLAEWKELLQP-SRIDWINLLDRL--REQNTQLYFKVAELVLSEESFQTNVRDYSKL 263
           P P + E+ +LL   ++++  +L+  L  R QN ++ +              ++  Y+ L
Sbjct: 76  PLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISY--------------DLYSYNIL 121

Query: 264 IDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGF 323
           I+   + + L  A  +L KM + G  PDIVT + L++ Y     +  A    + +    +
Sbjct: 122 INCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEY 181

Query: 324 QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQ 383
           QP+   +N++I       +    ++L+D M+  G                          
Sbjct: 182 QPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGC------------------------- 216

Query: 384 ITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYG 443
                     QP L +   +V    + GD D A S    M +   + D     ++I A  
Sbjct: 217 ----------QPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALC 266

Query: 444 KKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFK 503
               ++ ALNL  E++  G  P   TY  L+  L      ++A +LL  + E    P   
Sbjct: 267 NYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVV 326

Query: 504 IQVSLCDMYARAG--IEKKALQALGFLEAKKEQMGPDDF--ERIINGLLAGGFLQDAQRV 559
              +L D + + G  +E + L    + E  K  + PD F    +ING      L +A+ +
Sbjct: 327 TFSALIDAFVKEGKLVEAEKL----YDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 382

Query: 560 HGLM 563
             LM
Sbjct: 383 FELM 386


>gi|19071826|dbj|BAB85657.1| PnC401 homologue [Arabidopsis thaliana]
          Length = 831

 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 87/383 (22%), Positives = 167/383 (43%), Gaps = 46/383 (12%)

Query: 221 SRIDWIN-LLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERI 279
           SR   +N L++R R Q     F      L EE  + ++  Y+ L+ A  ++        +
Sbjct: 321 SRTKLMNGLIERGRPQEAHSIFNT----LIEEGHKPSLITYTTLVTALTRQKHFHSLLSL 376

Query: 280 LKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339
           + K+ +NG+ PD +    +++  S++GNLD+A + FE ++  G +P    +N++I  Y  
Sbjct: 377 ISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGK 436

Query: 340 AGQPKLGMSLVDMMI------------------------------------TSGIERSEE 363
            G+ +    L+DMM+                                    + G++    
Sbjct: 437 IGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVV 496

Query: 364 IYLALLRSFAQCGDVRGA-GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
            +  L +++A+ G    A   I   M   + +P + +C  +V  Y + G  ++A   F  
Sbjct: 497 TFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYR 556

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
           M  LG  P+     S+I  +   N +D    ++  +E+ G +P   T++ L++    +  
Sbjct: 557 MKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGD 616

Query: 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--F 540
           +   E++   + E G  P       L   YARAG  +KA Q L   + +K  + P+   +
Sbjct: 617 MKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAKQILN--QMRKFGVRPNVVIY 674

Query: 541 ERIINGLLAGGFLQDAQRVHGLM 563
            +II+G  + G ++ A +V+  M
Sbjct: 675 TQIISGWCSAGEMKKAMQVYKKM 697



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/264 (22%), Positives = 123/264 (46%), Gaps = 2/264 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAE-RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA 314
           +V  ++ L  A+A+      AE  I+ +M  N + P++ T   +V+ Y + G ++ A   
Sbjct: 494 DVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRF 553

Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
           F  ++  G  P+  V+NS+I  ++N         +VD+M   G++     +  L+ +++ 
Sbjct: 554 FYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSS 613

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
            GD++   +I   M      P + + ++L + Y +AG+P++A+   + M + G +P+   
Sbjct: 614 VGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAKQILNQMRKFGVRPNVVI 673

Query: 435 TASMIAAYGKKNLLDKALNLLLELEK-DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
              +I+ +     + KA+ +  ++    G  P   TY  L+   G  +   +AE+LL  +
Sbjct: 674 YTQIISGWCSAGEMKKAMQVYKKMCGIVGLSPNLTTYETLIWGFGEAKQPWKAEELLKDM 733

Query: 494 SELGEAPPFKIQVSLCDMYARAGI 517
                 P  K    + D +   G+
Sbjct: 734 EGKNVVPTRKTMQLIADGWKSIGV 757



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 88/184 (47%), Gaps = 6/184 (3%)

Query: 234 EQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIV 293
           E+  + ++++ EL         N+  ++ LI      N ++    ++  M E G+ PD+V
Sbjct: 548 EEALRFFYRMKEL-----GVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVV 602

Query: 294 TSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMM 353
           T + L++ +S  G++ R +E +  +   G  PD   ++ +   Y  AG+P+    +++ M
Sbjct: 603 TFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAKQILNQM 662

Query: 354 ITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIM-RIEEFQPTLESCTLLVEAYGQAGD 412
              G+  +  IY  ++  +   G+++ A Q+   M  I    P L +   L+  +G+A  
Sbjct: 663 RKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGIVGLSPNLTTYETLIWGFGEAKQ 722

Query: 413 PDQA 416
           P +A
Sbjct: 723 PWKA 726



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/265 (21%), Positives = 119/265 (44%), Gaps = 2/265 (0%)

Query: 246 LVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKA 305
           ++ S  +   +VR  +KL++   +    ++A  I   + E G  P ++T T LV   ++ 
Sbjct: 308 VICSGGTTCGDVRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQ 367

Query: 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
            +          +  +G +PD  ++N++I A   +G     M + + M  SG + +   +
Sbjct: 368 KHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTF 427

Query: 366 LALLRSFAQCGDVRGAGQITNIM-RIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
             L++ + + G +  + ++ ++M R E  QP   +C +LV+A+      ++A +    M 
Sbjct: 428 NTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQ 487

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLL-ELEKDGFEPGPATYTVLVDWLGRLQLI 483
             G KPD     ++  AY +      A ++++  +  +  +P   T   +V+       +
Sbjct: 488 SYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKM 547

Query: 484 NEAEQLLGKISELGEAPPFKIQVSL 508
            EA +   ++ ELG  P   +  SL
Sbjct: 548 EEALRFFYRMKELGVHPNLFVFNSL 572



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/360 (20%), Positives = 154/360 (42%), Gaps = 25/360 (6%)

Query: 227 NLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNEN 286
           NL+ R+ + N      + E +L +  F+   +DY   +    KE  L D E + K   E 
Sbjct: 243 NLIVRILDPNPMTRITIPE-ILEDVWFK---KDYKPAVFEEKKEANLADVEAVFKDSEEG 298

Query: 287 GI---------------VPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYN 331
            +                 D+ + T L++   + G    A   F +L   G +P    Y 
Sbjct: 299 RVQLRSFPCVICSGGTTCGDVRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYT 358

Query: 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391
           +++ A          +SL+  +  +G++    ++ A++ + ++ G++  A +I   M+  
Sbjct: 359 TLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKES 418

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH-KPDDRCTASMIAAYGKKNLLDK 450
             +PT  +   L++ YG+ G  +++    D M+R    +P+DR    ++ A+  +  +++
Sbjct: 419 GCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEE 478

Query: 451 ALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL-LGKISELGEAPPFKIQVSLC 509
           A N++ +++  G +P   T+  L     R+     AE + + ++      P  +   ++ 
Sbjct: 479 AWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIV 538

Query: 510 DMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQG 567
           + Y   G  ++AL+   F   K+  + P+   F  +I G L    +     V  LME  G
Sbjct: 539 NGYCEEGKMEEALRF--FYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFG 596


>gi|356566887|ref|XP_003551657.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 525

 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 140/317 (44%), Gaps = 5/317 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  LI+   K     DA  +L+KM + G+ P+++   ++V    K G +  A      + 
Sbjct: 164 YGTLINGLCKMGKTRDAIELLRKMEKGGVRPNLIMYNMVVDGLCKEGLVTEACGLCSEMV 223

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVD-MMITSGIERSEEIYLALLRSFAQCGDV 378
             G   D   YNS+I  +  AGQ +  + L++ M++   +      +  L+ +  + G V
Sbjct: 224 GKGICIDVFTYNSLIHGFCGAGQFQGAVRLLNEMVMKEDVRPDVYTFNILVDALCKLGMV 283

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             A  +  +M     +P + SC  L+  +   G   +A+  FD M+  G  P+    +++
Sbjct: 284 AEARNVFGLMIKRGLEPDVVSCNALMNGWCLRGCMSEAKEVFDRMVERGKLPNVISYSTL 343

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           I  Y K  ++D+AL LL E+ +    P   TY  L+D L +   +     L+  +   G+
Sbjct: 344 INGYCKVKMVDEALRLLTEMHQRNLVPDTVTYNCLLDGLSKSGRVLYEWDLVEAMRASGQ 403

Query: 499 APPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDA 556
           AP       L D Y +     KAL    F       + P+   +  +I+GL  GG ++ A
Sbjct: 404 APDLITYNVLLDDYLKRECLDKALAL--FQHIVDTGISPNIRTYNILIDGLCKGGRMKAA 461

Query: 557 QRVHGLMEAQGFAASER 573
           + +  L+  +G   + R
Sbjct: 462 KEIFQLLSVKGCRPNIR 478



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 89/176 (50%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  YS LI+ + K   +++A R+L +M++  +VPD VT   L+   SK+G +    +  
Sbjct: 336 NVISYSTLINGYCKVKMVDEALRLLTEMHQRNLVPDTVTYNCLLDGLSKSGRVLYEWDLV 395

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E++R+ G  PD   YN ++  Y+        ++L   ++ +GI  +   Y  L+    + 
Sbjct: 396 EAMRASGQAPDLITYNVLLDDYLKRECLDKALALFQHIVDTGISPNIRTYNILIDGLCKG 455

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
           G ++ A +I  ++ ++  +P + +  +++    + G  D+A +    M+  G  P+
Sbjct: 456 GRMKAAKEIFQLLSVKGCRPNIRTYNIMINGLRREGLLDEAEALLLEMVDDGFPPN 511



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 103/235 (43%), Gaps = 1/235 (0%)

Query: 245 ELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK 304
           E+V+ E+  + +V  ++ L+DA  K   + +A  +   M + G+ PD+V+   L++ +  
Sbjct: 256 EMVMKED-VRPDVYTFNILVDALCKLGMVAEARNVFGLMIKRGLEPDVVSCNALMNGWCL 314

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
            G +  AKE F+ +   G  P+   Y+++I  Y         + L+  M    +      
Sbjct: 315 RGCMSEAKEVFDRMVERGKLPNVISYSTLINGYCKVKMVDEALRLLTEMHQRNLVPDTVT 374

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
           Y  LL   ++ G V     +   MR     P L +  +L++ Y +    D+A + F +++
Sbjct: 375 YNCLLDGLSKSGRVLYEWDLVEAMRASGQAPDLITYNVLLDDYLKRECLDKALALFQHIV 434

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
             G  P+ R    +I    K   +  A  +   L   G  P   TY ++++ L R
Sbjct: 435 DTGISPNIRTYNILIDGLCKGGRMKAAKEIFQLLSVKGCRPNIRTYNIMINGLRR 489



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 96/213 (45%), Gaps = 16/213 (7%)

Query: 167 EVAEKIHERGEMILPE---EPKPITGKCKL-ITDKILSLEKEEDPSPLLAEWKELLQPSR 222
           EV +++ ERG+  LP        I G CK+ + D+ L L  E          +  L P  
Sbjct: 323 EVFDRMVERGK--LPNVISYSTLINGYCKVKMVDEALRLLTEMH--------QRNLVPDT 372

Query: 223 IDWINLLDRLREQNTQLY-FKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILK 281
           + +  LLD L +    LY + + E  +       ++  Y+ L+D + K  CL+ A  + +
Sbjct: 373 VTYNCLLDGLSKSGRVLYEWDLVE-AMRASGQAPDLITYNVLLDDYLKRECLDKALALFQ 431

Query: 282 KMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAG 341
            + + GI P+I T  +L+    K G +  AKE F+ L   G +P+ + YN MI      G
Sbjct: 432 HIVDTGISPNIRTYNILIDGLCKGGRMKAAKEIFQLLSVKGCRPNIRTYNIMINGLRREG 491

Query: 342 QPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
                 +L+  M+  G   +   +  L+R+  +
Sbjct: 492 LLDEAEALLLEMVDDGFPPNAVTFDPLVRALLE 524



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 59/268 (22%), Positives = 108/268 (40%), Gaps = 4/268 (1%)

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363
           K    D A   F  +      P     N ++ + +        +SL   + + G  +   
Sbjct: 32  KTPTFDDAVSTFHRMLHLHPPPSIVSLNKLLSSIMKTKHYPTVVSLCSHLDSKGTPKPSL 91

Query: 364 IYLAL-LRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
           + L++ + S    G +  A  +   +    F     + T L++     G   +A + +D+
Sbjct: 92  VTLSIFINSLTHLGQMGLAFSVMAKIVKRGFGVDPFTLTTLMKGLCLKGRTFEALNLYDH 151

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
            +  G   D+ C  ++I    K      A+ LL ++EK G  P    Y ++VD L +  L
Sbjct: 152 AVSKGFSFDEVCYGTLINGLCKMGKTRDAIELLRKMEKGGVRPNLIMYNMVVDGLCKEGL 211

Query: 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DF 540
           + EA  L  ++   G         SL   +  AG  + A++ L  +   KE + PD   F
Sbjct: 212 VTEACGLCSEMVGKGICIDVFTYNSLIHGFCGAGQFQGAVRLLNEM-VMKEDVRPDVYTF 270

Query: 541 ERIINGLLAGGFLQDAQRVHGLMEAQGF 568
             +++ L   G + +A+ V GLM  +G 
Sbjct: 271 NILVDALCKLGMVAEARNVFGLMIKRGL 298


>gi|15219527|ref|NP_177512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169780|sp|Q9C9U0.1|PP118_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g73710
 gi|12324197|gb|AAG52063.1|AC012679_1 hypothetical protein; 49134-52109 [Arabidopsis thaliana]
 gi|332197379|gb|AEE35500.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 991

 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 154/332 (46%), Gaps = 16/332 (4%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++ +I        L +AE +LKKM E GI PD  T  +L+ +++ AG+++ A E +  +R
Sbjct: 343 FNTMIHTCGTHGHLSEAESLLKKMEEKGISPDTKTYNILLSLHADAGDIEAALEYYRKIR 402

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  PD   + +++             +++  M  + I   E     +++ +   G V 
Sbjct: 403 KVGLFPDTVTHRAVLHILCQRKMVAEVEAVIAEMDRNSIRIDEHSVPVIMQMYVNEGLVV 462

Query: 380 GAGQITNIMRIEEFQ--PTLESCTL--LVEAYGQAGDPDQARSNFDYMIR--LGHKPDDR 433
            A  +      E FQ    L S TL  +++ Y + G   +A + F Y  R   G + D  
Sbjct: 463 QAKAL-----FERFQLDCVLSSTTLAAVIDVYAEKGLWVEAETVF-YGKRNMSGQRNDVL 516

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
               MI AYGK  L +KAL+L   ++  G  P   TY  L   L  + L++EA+++L ++
Sbjct: 517 EYNVMIKAYGKAKLHEKALSLFKGMKNQGTWPDECTYNSLFQMLAGVDLVDEAQRILAEM 576

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGG 551
            + G  P  K   ++   Y R G+   A+     +E  K  + P++  +  +ING    G
Sbjct: 577 LDSGCKPGCKTYAAMIASYVRLGLLSDAVDLYEAME--KTGVKPNEVVYGSLINGFAESG 634

Query: 552 FLQDAQRVHGLMEAQGFAASERLKVALISSQT 583
            +++A +   +ME  G  ++  +  +LI + +
Sbjct: 635 MVEEAIQYFRMMEEHGVQSNHIVLTSLIKAYS 666



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 96/209 (45%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           + +V +Y+ +I A+ K    E A  + K M   G  PD  T   L  M +    +D A+ 
Sbjct: 512 RNDVLEYNVMIKAYGKAKLHEKALSLFKGMKNQGTWPDECTYNSLFQMLAGVDLVDEAQR 571

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
               +   G +P  K Y +MI +YV  G     + L + M  +G++ +E +Y +L+  FA
Sbjct: 572 ILAEMLDSGCKPGCKTYAAMIASYVRLGLLSDAVDLYEAMEKTGVKPNEVVYGSLINGFA 631

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           + G V  A Q   +M     Q      T L++AY + G  ++AR  +D M      PD  
Sbjct: 632 ESGMVEEAIQYFRMMEEHGVQSNHIVLTSLIKAYSKVGCLEEARRVYDKMKDSEGGPDVA 691

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDG 462
            + SM++      ++ +A ++   L + G
Sbjct: 692 ASNSMLSLCADLGIVSEAESIFNALREKG 720



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 110/245 (44%), Gaps = 15/245 (6%)

Query: 261 SKLIDAHAKENCLEDAERILK-KMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           + +ID +A++    +AE +   K N +G   D++   V++  Y KA   ++A   F+ ++
Sbjct: 483 AAVIDVYAEKGLWVEAETVFYGKRNMSGQRNDVLEYNVMIKAYGKAKLHEKALSLFKGMK 542

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVD-------MMITSGIERSEEIYLALLRSF 372
           + G  PD+  YNS+        Q   G+ LVD        M+ SG +   + Y A++ S+
Sbjct: 543 NQGTWPDECTYNSLF-------QMLAGVDLVDEAQRILAEMLDSGCKPGCKTYAAMIASY 595

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + G +  A  +   M     +P       L+  + ++G  ++A   F  M   G + + 
Sbjct: 596 VRLGLLSDAVDLYEAMEKTGVKPNEVVYGSLINGFAESGMVEEAIQYFRMMEEHGVQSNH 655

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               S+I AY K   L++A  +  +++     P  A    ++     L +++EAE +   
Sbjct: 656 IVLTSLIKAYSKVGCLEEARRVYDKMKDSEGGPDVAASNSMLSLCADLGIVSEAESIFNA 715

Query: 493 ISELG 497
           + E G
Sbjct: 716 LREKG 720



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 86/367 (23%), Positives = 148/367 (40%), Gaps = 40/367 (10%)

Query: 183 EPKPITGKCK---LITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNT-Q 238
           +P P + K K   +I   + SL+   D    LA     L P     +     L+EQ   +
Sbjct: 72  KPNPSSRKRKYGGVIPSILRSLDSSTDIETTLASLCLNLSPKEQTVL-----LKEQTRWE 126

Query: 239 LYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVL 298
              +V     S +S+  NV  Y+ ++ A  +    ++      +M  NG++P   T  +L
Sbjct: 127 RVLRVFRFFQSHQSYVPNVIHYNIVLRALGRAGKWDELRLCWIEMAHNGVLPTNNTYGML 186

Query: 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
           V +Y KAG +  A    + +      PD+    +++  + N+G+        D       
Sbjct: 187 VDVYGKAGLVKEALLWIKHMGQRMHFPDEVTMATVVRVFKNSGE----FDRADRFFKGWC 242

Query: 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ-----PTLESCTLLVEAYGQAGDP 413
               ++ L  +  F + G  +    +   + +E F+     P  +S   L  A G    P
Sbjct: 243 AGKVDLDLDSIDDFPKNGSAQSPVNLKQFLSMELFKVGARNPIEKS---LHFASGSDSSP 299

Query: 414 DQAR--SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYT 471
            + R  S F+ +I L               YGK   L+ A NL  E+ K G      T+ 
Sbjct: 300 RKPRLTSTFNTLIDL---------------YGKAGRLNDAANLFSEMLKSGVPIDTVTFN 344

Query: 472 VLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK 531
            ++   G    ++EAE LL K+ E G +P  K    L  ++A AG  + AL+   + + +
Sbjct: 345 TMIHTCGTHGHLSEAESLLKKMEEKGISPDTKTYNILLSLHADAGDIEAALEY--YRKIR 402

Query: 532 KEQMGPD 538
           K  + PD
Sbjct: 403 KVGLFPD 409



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 63/296 (21%), Positives = 120/296 (40%), Gaps = 40/296 (13%)

Query: 240 YFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLV 299
           YF++ E    E   Q+N    + LI A++K  CLE+A R+  KM ++   PD+  S  ++
Sbjct: 642 YFRMME----EHGVQSNHIVLTSLIKAYSKVGCLEEARRVYDKMKDSEGGPDVAASNSML 697

Query: 300 HMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
            + +  G +  A+  F +LR  G   D   + +M+  Y   G     + + + M  SG+ 
Sbjct: 698 SLCADLGIVSEAESIFNALREKG-TCDVISFATMMYLYKGMGMLDEAIEVAEEMRESGLL 756

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE--------FQPTL----------ESCT 401
                +  ++  +A  G +    ++ + M +E         F+             E+ +
Sbjct: 757 SDCTSFNQVMACYAADGQLSECCELFHEMLVERKLLLDWGTFKTLFTLLKKGGVPSEAVS 816

Query: 402 LLVEAYGQA---GDPDQARSNFDYM------------IRLGHKPDDR-CTASMIAAYGKK 445
            L  AY +A     P    + F  M            +  G  P +     ++I  Y   
Sbjct: 817 QLQTAYNEAKPLATPAITATLFSAMGLYAYALESCQELTSGEIPREHFAYNAVIYTYSAS 876

Query: 446 NLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
             +D AL   + +++ G EP   T   LV   G+  ++   +++  +++  GE  P
Sbjct: 877 GDIDMALKAYMRMQEKGLEPDIVTQAYLVGIYGKAGMVEGVKRVHSRLT-FGELEP 931



 Score = 45.8 bits (107), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 65/291 (22%), Positives = 108/291 (37%), Gaps = 6/291 (2%)

Query: 294 TSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMM 353
           T   L+ +Y KAG L+ A   F  +   G   D   +N+MI      G      SL+  M
Sbjct: 307 TFNTLIDLYGKAGRLNDAANLFSEMLKSGVPIDTVTFNTMIHTCGTHGHLSEAESLLKKM 366

Query: 354 ITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDP 413
              GI    + Y  LL   A  GD+  A +    +R     P   +   ++    Q    
Sbjct: 367 EEKGISPDTKTYNILLSLHADAGDIEAALEYYRKIRKVGLFPDTVTHRAVLHILCQRKMV 426

Query: 414 DQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVL 473
            +  +    M R   + D+     ++  Y  + L+ +A  L    + D       T   +
Sbjct: 427 AEVEAVIAEMDRNSIRIDEHSVPVIMQMYVNEGLVVQAKALFERFQLDCV-LSSTTLAAV 485

Query: 474 VDWLGRLQLINEAEQLL-GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKK 532
           +D      L  EAE +  GK +  G+         +   Y +A + +KAL    F   K 
Sbjct: 486 IDVYAEKGLWVEAETVFYGKRNMSGQRNDVLEYNVMIKAYGKAKLHEKALSL--FKGMKN 543

Query: 533 EQMGPDD--FERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
           +   PD+  +  +   L     + +AQR+   M   G     +   A+I+S
Sbjct: 544 QGTWPDECTYNSLFQMLAGVDLVDEAQRILAEMLDSGCKPGCKTYAAMIAS 594



 Score = 45.8 bits (107), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 45/87 (51%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +I  ++    ++ A +   +M E G+ PDIVT   LV +Y KAG ++  K     L 
Sbjct: 866 YNAVIYTYSASGDIDMALKAYMRMQEKGLEPDIVTQAYLVGIYGKAGMVEGVKRVHSRLT 925

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLG 346
               +P + ++ ++  AYV+A +  L 
Sbjct: 926 FGELEPSQSLFKAVRDAYVSANRQDLA 952


>gi|46091161|dbj|BAD13709.1| PPR protein [Oryza sativa Indica Group]
          Length = 332

 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 109/231 (47%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  YS +I+   KE  L+       +M +  I P++VT   ++    KA  +D+A E  
Sbjct: 11  DVVSYSTVINGFFKEGDLDKTYSTYNEMLDKRISPNVVTYNSIIAALCKAQTVDKAMEVL 70

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
            ++   G  PD   YNS++  + ++GQPK  +  +  M + G+E     Y +L+    + 
Sbjct: 71  TTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKN 130

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G    A +I + M     +P + +   L++ Y   G   +     D M+R G  P+    
Sbjct: 131 GRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVF 190

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           + ++ AY K+  +++A+ +  ++ + G  P   TY  ++D L +   + +A
Sbjct: 191 SILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDA 241



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/296 (22%), Positives = 130/296 (43%), Gaps = 4/296 (1%)

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL 349
           PD+V+ + +++ + K G+LD+    +  +      P+   YNS+I A   A      M +
Sbjct: 10  PDVVSYSTVINGFFKEGDLDKTYSTYNEMLDKRISPNVVTYNSIIAALCKAQTVDKAMEV 69

Query: 350 VDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409
           +  M+ SG+      Y +++  F   G  + A      MR +  +P + +   L++   +
Sbjct: 70  LTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCK 129

Query: 410 AGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPAT 469
            G   +AR  FD M + G KPD     +++  Y  K  L +   LL  + ++G  P    
Sbjct: 130 NGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYV 189

Query: 470 YTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLE 529
           +++LV    + + + EA  +  K+ + G  P      ++ D+  ++G  + A+  L F +
Sbjct: 190 FSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAM--LYFEQ 247

Query: 530 AKKEQMGPDD--FERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQT 583
              E + PD   +  +I+ L      + A+ +   M  +G   S     ++I S  
Sbjct: 248 MIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHC 303



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/302 (21%), Positives = 131/302 (43%), Gaps = 4/302 (1%)

Query: 203 KEEDPSPLLAEWKELL----QPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVR 258
           KE D     + + E+L     P+ + + +++  L +  T          + +     +  
Sbjct: 24  KEGDLDKTYSTYNEMLDKRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCM 83

Query: 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318
            Y+ ++         ++A   LKKM  +G+ PD+VT   L+    K G    A++ F+S+
Sbjct: 84  TYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSM 143

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
              G +PD   Y +++  Y   G       L+D+M+ +GI  +  ++  L+ ++A+   V
Sbjct: 144 TKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKV 203

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             A  + + MR +   P   +   +++   ++G  + A   F+ MI  G +PD     S+
Sbjct: 204 EEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSL 263

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           I +    +  +KA  L LE+   G       +  ++D   +   + E+ +L   +  +G 
Sbjct: 264 IHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESVKLFDLMVRIGV 323

Query: 499 AP 500
            P
Sbjct: 324 KP 325



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/214 (20%), Positives = 94/214 (43%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           ++P  + + +L+D L +       +     +++   + ++  Y  L+  +A +  L +  
Sbjct: 113 VEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMH 172

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
            +L  M  NGI P+    ++LV  Y+K   ++ A   F  +R  G  P+   Y ++I   
Sbjct: 173 GLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVL 232

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
             +G+ +  M   + MI  G+     +Y +L+ S         A ++   M       + 
Sbjct: 233 CKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLST 292

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
                +++++ + G   ++   FD M+R+G KPD
Sbjct: 293 IFFNSIIDSHCKEGRVIESVKLFDLMVRIGVKPD 326


>gi|384251704|gb|EIE25181.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
          Length = 905

 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 138/306 (45%), Gaps = 5/306 (1%)

Query: 255 TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA 314
            +V  Y+ +I     +  ++ A  + K+M    I  ++ T T L+++  K GN   A + 
Sbjct: 208 CDVYTYTAMISMCIYQQDVDRAMDLAKEMRVRNIERNVHTYTALMNVCIKCGNCPLALDT 267

Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
           +  +R  G  P+   YN++I  Y   G  + G+ ++ +M T G+E     Y  L+ +   
Sbjct: 268 YNHMRQDGACPNVVTYNTLIDVYGKMGLWEQGIKVLTLMKTEGVEPVLRTYNTLIIACNM 327

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
           CG  R A  +   M  E + P   +   L+ AYG+AG  D+    F  M+  G +     
Sbjct: 328 CGQPREAMAVYKRMLDEGYSPNATTYNALISAYGKAGQLDKVMEVFQEMVHKGCERSVIT 387

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
            +S+I+A  K    + AL L  E+  +G  P   TY  L+    +     +A ++  ++ 
Sbjct: 388 YSSLISACEKAGQWELALELFNEMAGEGCIPNTVTYNSLITACAQGAQWEKASEVFEQMQ 447

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGF 552
           + G  P      +L   Y + G  ++AL A  + + + ++  PD   F  II+ L   G 
Sbjct: 448 KGGCTPDVVTFTALISSYEKGGQWRRALGA--YEQMRLQRCKPDAIVFNAIIDTLWETGV 505

Query: 553 LQDAQR 558
           +  AQR
Sbjct: 506 IW-AQR 510



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 106/250 (42%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ LID + K    E   ++L  M   G+ P + T   L+   +  G    A   +
Sbjct: 279 NVVTYNTLIDVYGKMGLWEQGIKVLTLMKTEGVEPVLRTYNTLIIACNMCGQPREAMAVY 338

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + +   G+ P+   YN++I AY  AGQ    M +   M+  G ERS   Y +L+ +  + 
Sbjct: 339 KRMLDEGYSPNATTYNALISAYGKAGQLDKVMEVFQEMVHKGCERSVITYSSLISACEKA 398

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G    A ++ N M  E   P   +   L+ A  Q    ++A   F+ M + G  PD    
Sbjct: 399 GQWELALELFNEMAGEGCIPNTVTYNSLITACAQGAQWEKASEVFEQMQKGGCTPDVVTF 458

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I++Y K     +AL    ++     +P    +  ++D L    +I    + L    +
Sbjct: 459 TALISSYEKGGQWRRALGAYEQMRLQRCKPDAIVFNAIIDTLWETGVIWAQRKALALFQQ 518

Query: 496 LGEAPPFKIQ 505
             E   FK Q
Sbjct: 519 AVEDGHFKQQ 528



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 85/199 (42%), Gaps = 11/199 (5%)

Query: 197 KILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTN 256
           K+L+L K E   P+L  +  L     I   N+  + RE        V + +L +E +  N
Sbjct: 301 KVLTLMKTEGVEPVLRTYNTL-----IIACNMCGQPREA-----MAVYKRML-DEGYSPN 349

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
              Y+ LI A+ K   L+    + ++M   G    ++T + L+    KAG  + A E F 
Sbjct: 350 ATTYNALISAYGKAGQLDKVMEVFQEMVHKGCERSVITYSSLISACEKAGQWELALELFN 409

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
            +   G  P+   YNS+I A     Q +    + + M   G       + AL+ S+ + G
Sbjct: 410 EMAGEGCIPNTVTYNSLITACAQGAQWEKASEVFEQMQKGGCTPDVVTFTALISSYEKGG 469

Query: 377 DVRGAGQITNIMRIEEFQP 395
             R A      MR++  +P
Sbjct: 470 QWRRALGAYEQMRLQRCKP 488


>gi|414875533|tpg|DAA52664.1| TPA: hypothetical protein ZEAMMB73_493958 [Zea mays]
          Length = 688

 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 128/291 (43%), Gaps = 2/291 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L        V  Y+  ID + +   LE+A  + ++M E G +P++ T T+L+       +
Sbjct: 371 LRRAGLAPTVLTYNIRIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVCS 430

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L  A+E F+ + S G QPD   YN+ I A +  G     + L ++++  GI      Y  
Sbjct: 431 LAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARALELREVLMLEGISSDTVTYNI 490

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    + G+++ A ++   M     QP   + T L+ A+ + G   +AR  F+ MI  G
Sbjct: 491 LIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDG 550

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P       +I AY ++  L  A     ++ ++G EP   TY VL+  L R+     A 
Sbjct: 551 LLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLAS 610

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
               ++ E G          L D   + G  + A++   + E  +  + PD
Sbjct: 611 HHFHEMLERGLVANKYTYTLLIDGNCKVGNWEDAMRF--YFEMHQNGIHPD 659



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 114/262 (43%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI       C++    +  +M   GI+P +VT   ++H   ++G ++ A+  F  +R
Sbjct: 278 YNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMR 337

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G  PD   YNS++  Y  AG  K  + L   +  +G+  +   Y   +  + + GD+ 
Sbjct: 338 AMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNIRIDGYCRLGDLE 397

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  +   M  +   P + + T+L++          AR  FD M+  G +PD     + I
Sbjct: 398 EARILKEEMGEQGCLPNVCTYTILMKGSLNVCSLAMAREFFDEMLSKGLQPDCFAYNTRI 457

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            A      + +AL L   L  +G      TY +L+  L +   + +A++L  K+   G  
Sbjct: 458 CAELILGDIARALELREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQ 517

Query: 500 PPFKIQVSLCDMYARAGIEKKA 521
           P       L   +   G+ ++A
Sbjct: 518 PDCITYTCLIHAHCERGLLREA 539



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 82/185 (44%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           VL  E   ++   Y+ LI    K   L+DA+ +  KM  NG+ PD +T T L+H + + G
Sbjct: 475 VLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERG 534

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            L  A++ F ++ S G  P    +  +I AY   G           M+  G+E +E  Y 
Sbjct: 535 LLREARKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYN 594

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+ +  + G  + A    + M          + TLL++   + G+ + A   +  M + 
Sbjct: 595 VLIHALCRMGRTQLASHHFHEMLERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQN 654

Query: 427 GHKPD 431
           G  PD
Sbjct: 655 GIHPD 659



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 64/133 (48%)

Query: 245 ELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK 304
           ++ +     Q +   Y+ LI AH +   L +A +I   M  +G++P  VT TV++H Y +
Sbjct: 508 QMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLPSAVTFTVIIHAYCR 567

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
            GNL  A   F  +   G +P++  YN +I A    G+ +L       M+  G+  ++  
Sbjct: 568 RGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLASHHFHEMLERGLVANKYT 627

Query: 365 YLALLRSFAQCGD 377
           Y  L+    + G+
Sbjct: 628 YTLLIDGNCKVGN 640



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 78/361 (21%), Positives = 135/361 (37%), Gaps = 39/361 (10%)

Query: 245 ELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK 304
           +L +  E     V  Y+ +I    +   +E A+    +M   G++PD++T   L++ Y K
Sbjct: 298 QLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCK 357

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ---------------------- 342
           AGNL  A   F  LR  G  P    YN  I  Y   G                       
Sbjct: 358 AGNLKEALLLFGDLRRAGLAPTVLTYNIRIDGYCRLGDLEEARILKEEMGEQGCLPNVCT 417

Query: 343 -----------PKLGMS--LVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389
                        L M+    D M++ G++     Y   + +    GD+  A ++  ++ 
Sbjct: 418 YTILMKGSLNVCSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARALELREVLM 477

Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD 449
           +E       +  +L+    + G+   A+     M+  G +PD      +I A+ ++ LL 
Sbjct: 478 LEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLR 537

Query: 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLC 509
           +A  +   +  DG  P   T+TV++    R   +  A     K+ E G  P       L 
Sbjct: 538 EARKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLI 597

Query: 510 DMYARAGIEKKALQALGFLEAKKEQMGPDDFER--IINGLLAGGFLQDAQRVHGLMEAQG 567
               R G  +  L +  F E  +  +  + +    +I+G    G  +DA R +  M   G
Sbjct: 598 HALCRMG--RTQLASHHFHEMLERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQNG 655

Query: 568 F 568
            
Sbjct: 656 I 656



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 124/308 (40%), Gaps = 8/308 (2%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           ++      +V+D + ++ A       +D   + ++M + GI P IVT   L+  + K G 
Sbjct: 160 MASHGVAPDVKDCNHVLRALRDAARWDDICAVHEEMLQLGIEPSIVTYNTLLDSFLKEGR 219

Query: 308 LDRAKEAFESL--RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
            D+     + +  R  G  P+   YN +I      G  +    LV+ M  S  + S   Y
Sbjct: 220 KDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLEEAAELVEGMRLSK-KASSFTY 278

Query: 366 LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
             L+      G V+    +   M  E   PT+ +   ++    Q+G  + A+  F  M  
Sbjct: 279 NPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRA 338

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
           +G  PD     S++  Y K   L +AL L  +L + G  P   TY + +D   RL  + E
Sbjct: 339 MGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNIRIDGYCRLGDLEE 398

Query: 486 AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF---ER 542
           A  L  ++ E G  P       L  M     +   A+    F E   + + PD F    R
Sbjct: 399 ARILKEEMGEQGCLPNVCTYTIL--MKGSLNVCSLAMAREFFDEMLSKGLQPDCFAYNTR 456

Query: 543 IINGLLAG 550
           I   L+ G
Sbjct: 457 ICAELILG 464



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 134/334 (40%), Gaps = 5/334 (1%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNE--NGIVPDIVTSTVLVHMYSKAGNLDR 310
            + ++  Y+ L+D+  KE   +    +LK+M    +G +P+ VT  V++   ++ G+L+ 
Sbjct: 200 IEPSIVTYNTLLDSFLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLEE 259

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A E  E +R    +     YN +I   +  G  K    L   M   GI  +   Y A++ 
Sbjct: 260 AAELVEGMRLSK-KASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIH 318

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
              Q G V  A      MR     P + +   L+  Y +AG+  +A   F  + R G  P
Sbjct: 319 GLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAP 378

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
                   I  Y +   L++A  L  E+ + G  P   TYT+L+     +  +  A +  
Sbjct: 379 TVLTYNIRIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVCSLAMAREFF 438

Query: 491 GKISELGEAP-PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLA 549
            ++   G  P  F     +C       I  +AL+    L  +        +  +I+GL  
Sbjct: 439 DEMLSKGLQPDCFAYNTRICAELILGDI-ARALELREVLMLEGISSDTVTYNILIHGLCK 497

Query: 550 GGFLQDAQRVHGLMEAQGFAASERLKVALISSQT 583
            G L+DA+ +   M + G          LI +  
Sbjct: 498 TGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHC 531



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 114/269 (42%), Gaps = 27/269 (10%)

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
            AF  + SHG  PD K  N ++ A  +A +     ++ + M+  GIE S   Y  LL SF
Sbjct: 155 SAFREMASHGVAPDVKDCNHVLRALRDAARWDDICAVHEEMLQLGIEPSIVTYNTLLDSF 214

Query: 373 AQCG------------DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
            + G            + RG+G + N +             +++    + GD ++A    
Sbjct: 215 LKEGRKDKVAMLLKEMETRGSGCLPNDVTYN----------VVITGLTRKGDLEEAAELV 264

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
           + M RL  K        +I     +  + K  +L LE+E +G  P   TY  ++  L + 
Sbjct: 265 EGM-RLSKKASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQS 323

Query: 481 QLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD-- 538
            L+  A+    ++  +G  P      SL + Y +AG  K+AL   G  + ++  + P   
Sbjct: 324 GLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFG--DLRRAGLAPTVL 381

Query: 539 DFERIINGLLAGGFLQDAQRVHGLMEAQG 567
            +   I+G    G L++A+ +   M  QG
Sbjct: 382 TYNIRIDGYCRLGDLEEARILKEEMGEQG 410



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 65/161 (40%), Gaps = 12/161 (7%)

Query: 218 LQPSRIDWINLLDR------LREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKEN 271
           LQP  I +  L+        LRE       K+   ++S+    + V  ++ +I A+ +  
Sbjct: 516 LQPDCITYTCLIHAHCERGLLREAR-----KIFNNMISDGLLPSAV-TFTVIIHAYCRRG 569

Query: 272 CLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYN 331
            L  A    +KM E G+ P+ +T  VL+H   + G    A   F  +   G   +K  Y 
Sbjct: 570 NLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLASHHFHEMLERGLVANKYTYT 629

Query: 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
            +I      G  +  M     M  +GI      + AL++ F
Sbjct: 630 LLIDGNCKVGNWEDAMRFYFEMHQNGIHPDYLTHKALVKGF 670


>gi|29294052|gb|AAO73889.1| protein kinase family [Arabidopsis thaliana]
          Length = 854

 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 87/383 (22%), Positives = 167/383 (43%), Gaps = 46/383 (12%)

Query: 221 SRIDWIN-LLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERI 279
           SR   +N L++R R Q     F      L EE  + ++  Y+ L+ A  ++        +
Sbjct: 344 SRTKLMNGLIERGRPQEAHSIFNT----LIEEGHKPSLITYTTLVTALTRQKHFHSLLSL 399

Query: 280 LKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339
           + K+ +NG+ PD +    +++  S++GNLD+A + FE ++  G +P    +N++I  Y  
Sbjct: 400 ISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGK 459

Query: 340 AGQPKLGMSLVDMMI------------------------------------TSGIERSEE 363
            G+ +    L+DMM+                                    + G++    
Sbjct: 460 IGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVV 519

Query: 364 IYLALLRSFAQCGDVRGA-GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
            +  L +++A+ G    A   I   M   + +P + +C  +V  Y + G  ++A   F  
Sbjct: 520 TFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYR 579

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
           M  LG  P+     S+I  +   N +D    ++  +E+ G +P   T++ L++    +  
Sbjct: 580 MKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGD 639

Query: 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--F 540
           +   E++   + E G  P       L   YARAG  +KA Q L   + +K  + P+   +
Sbjct: 640 MKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILN--QMRKFGVRPNVVIY 697

Query: 541 ERIINGLLAGGFLQDAQRVHGLM 563
            +II+G  + G ++ A +V+  M
Sbjct: 698 TQIISGWCSAGEMKKAMQVYKKM 720



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/313 (21%), Positives = 132/313 (42%), Gaps = 37/313 (11%)

Query: 242 KVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVL--- 298
           ++ +++L +E  Q N R  + L+ A   +  +E+A  I+ KM   G+ PD+VT   L   
Sbjct: 468 RLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKA 527

Query: 299 ---------------------------------VHMYSKAGNLDRAKEAFESLRSHGFQP 325
                                            V+ Y + G ++ A   F  ++  G  P
Sbjct: 528 YARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHP 587

Query: 326 DKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQIT 385
           +  V+NS+I  ++N         +VD+M   G++     +  L+ +++  GD++   +I 
Sbjct: 588 NLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIY 647

Query: 386 NIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKK 445
             M      P + + ++L + Y +AG+P++A    + M + G +P+      +I+ +   
Sbjct: 648 TDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSA 707

Query: 446 NLLDKALNLLLELEK-DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKI 504
             + KA+ +  ++    G  P   TY  L+   G  +   +AE+LL  +      P  K 
Sbjct: 708 GEMKKAMQVYKKMCGIVGLSPNLTTYETLIWGFGEAKQPWKAEELLKDMEGKNVVPTRKT 767

Query: 505 QVSLCDMYARAGI 517
              + D +   G+
Sbjct: 768 MQLIADGWKSIGV 780



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 88/184 (47%), Gaps = 6/184 (3%)

Query: 234 EQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIV 293
           E+  + ++++ EL         N+  ++ LI      N ++    ++  M E G+ PD+V
Sbjct: 571 EEALRFFYRMKEL-----GVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVV 625

Query: 294 TSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMM 353
           T + L++ +S  G++ R +E +  +   G  PD   ++ +   Y  AG+P+    +++ M
Sbjct: 626 TFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQM 685

Query: 354 ITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIM-RIEEFQPTLESCTLLVEAYGQAGD 412
              G+  +  IY  ++  +   G+++ A Q+   M  I    P L +   L+  +G+A  
Sbjct: 686 RKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGIVGLSPNLTTYETLIWGFGEAKQ 745

Query: 413 PDQA 416
           P +A
Sbjct: 746 PWKA 749



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/360 (20%), Positives = 154/360 (42%), Gaps = 25/360 (6%)

Query: 227 NLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNEN 286
           NL+ R+ + N      + E +L +  F+   +DY   +    KE  L D E + K   E 
Sbjct: 266 NLIVRILDPNPMTRITIPE-ILEDVWFK---KDYKPAVFEEKKEANLADVEAVFKDSEEG 321

Query: 287 GI---------------VPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYN 331
            +                 D+ + T L++   + G    A   F +L   G +P    Y 
Sbjct: 322 RVQLRSFPCVICSGGTTCGDVRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYT 381

Query: 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391
           +++ A          +SL+  +  +G++    ++ A++ + ++ G++  A +I   M+  
Sbjct: 382 TLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKES 441

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH-KPDDRCTASMIAAYGKKNLLDK 450
             +PT  +   L++ YG+ G  +++    D M+R    +P+DR    ++ A+  +  +++
Sbjct: 442 GCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEE 501

Query: 451 ALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL-LGKISELGEAPPFKIQVSLC 509
           A N++ +++  G +P   T+  L     R+     AE + + ++      P  +   ++ 
Sbjct: 502 AWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIV 561

Query: 510 DMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQG 567
           + Y   G  ++AL+   F   K+  + P+   F  +I G L    +     V  LME  G
Sbjct: 562 NGYCEEGKMEEALRF--FYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFG 619


>gi|125540047|gb|EAY86442.1| hypothetical protein OsI_07823 [Oryza sativa Indica Group]
          Length = 703

 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 118/248 (47%), Gaps = 4/248 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E  ++ + R Y+ ++D    E   ++AE +L++M E G+ P +VT T +++ Y K G 
Sbjct: 138 MKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGR 197

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A    E ++  G +P+   YN+++  + N G+    M+L++ M   G+      Y  
Sbjct: 198 MSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAVTYNL 257

Query: 368 LLRSFAQC--GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
           L+R   QC  G +  A ++  +M  +       +   L+ A  + G  DQA S FD +  
Sbjct: 258 LIR--GQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLET 315

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
            G KP+     S+I    K   +D A   L ++   G  P   TY+  ++ L +++   E
Sbjct: 316 RGIKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQE 375

Query: 486 AEQLLGKI 493
               +G++
Sbjct: 376 GLSFIGEM 383



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/340 (20%), Positives = 148/340 (43%), Gaps = 19/340 (5%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI     +  +E A R+L+ M  +G++ D  T   L++   K G  D+A   F+SL 
Sbjct: 255 YNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLE 314

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC-GDV 378
           + G +P+   +NS+I     +G+  +    ++ M+++G       Y + +    +  G  
Sbjct: 315 TRGIKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQ 374

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
            G   I  +++ ++ +P+  + T+++    +  +       +  M+  G  PD     + 
Sbjct: 375 EGLSFIGEMLQ-KDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTS 433

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           + AY  +  L++A N+L+E+ K+G       Y  L+D    +   + A  +L +++ +  
Sbjct: 434 MRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVAS 493

Query: 499 APP----FKIQVSLCDM--------YARAGIEK--KALQALGFLEA-KKEQMGPDD--FE 541
            P     F +   L  M           AG+ K  +     G  +  KK +  P+   + 
Sbjct: 494 VPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYS 553

Query: 542 RIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
            I+ G    G  ++A  +  LM+    + +E +  AL++ 
Sbjct: 554 SILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTC 593



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 94/225 (41%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E+     V   + +I+A+ KE  + DA R+L+ M   G  P++ T   LV  +   G + 
Sbjct: 175 EKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVH 234

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
           +A      +R  G  PD   YN +I      G  +    L+ +M   G+   +  Y AL+
Sbjct: 235 KAMALLNKMRVCGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALI 294

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
            +  + G    A  + + +     +P   +   L+    ++G  D A    + M+  G  
Sbjct: 295 NALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCT 354

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
           PD    +S I    K     + L+ + E+ +   +P    YT+++
Sbjct: 355 PDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVI 399



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 79/321 (24%), Positives = 130/321 (40%), Gaps = 25/321 (7%)

Query: 176 GEMILPEEPKPITGKCKLITDKILSLEKEEDPSPLLAEWKELLQP-SRIDWINLLDRLRE 234
           GEM L ++ KP T    ++  K+L   KE +   +   W E++      D +     +R 
Sbjct: 381 GEM-LQKDVKPSTVNYTIVIHKLL---KERNYGLVARTWGEMVSSGCNPDVVTYTTSMRA 436

Query: 235 QNTQLYFKVAELVLSEES---FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPD 291
              +     AE VL E S      +   Y+ L+D HA     + A  ILK+M     VP+
Sbjct: 437 YCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPN 496

Query: 292 IVTSTVLV-HMYS----------------KAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
             T  +L+ H+                  KA  L      F+ ++ + F P+   Y+S++
Sbjct: 497 QFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSIL 556

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
             +   G+ +   SLV +M    I  +E+IY AL+  F +      A  +   M    F 
Sbjct: 557 EGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFI 616

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P L S   L+      G  D+A+  F       + PD+     +I    KK   D +  +
Sbjct: 617 PHLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSDISREM 676

Query: 455 LLELEKDGFEPGPATYTVLVD 475
           ++ LE+    P   TY +L +
Sbjct: 677 IIMLERMNCRPSHQTYAMLTE 697



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/288 (21%), Positives = 116/288 (40%), Gaps = 4/288 (1%)

Query: 294 TSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMM 353
           T   ++    +  +L  A      +   G++PD   +NS+I+ Y    Q  +   L D M
Sbjct: 13  TYNAVIRSLCRRADLASALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKM 72

Query: 354 ITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDP 413
              G  +    Y AL+  F + G +  A ++   M     QP +     LV+   +AG  
Sbjct: 73  PLRGFAQDVVSYAALIEGFCETGRIDEAVELFGEMD----QPDMHMYAALVKGLCKAGRG 128

Query: 414 DQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVL 473
           ++       M  LG +P  R  A+++     +    +A  +L E+ + G  P   T T +
Sbjct: 129 EEGLLMLRRMKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAV 188

Query: 474 VDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE 533
           ++   +   +++A ++L  +   G  P      +L   +   G   KA+  L  +     
Sbjct: 189 INAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGV 248

Query: 534 QMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
                 +  +I G    G ++ A R+  LME  G  A +    ALI++
Sbjct: 249 NPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINA 296



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 77/329 (23%), Positives = 129/329 (39%), Gaps = 43/329 (13%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +I +  +   L  A R L  M  +G  PD  T   L+  Y +   +D A++ F+ + 
Sbjct: 14  YNAVIRSLCRRADLASALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMP 73

Query: 320 SHGFQPDKKVYNSMIMAYVNAG-------------QPKLGM--SLVDMMITSGIERSEEI 364
             GF  D   Y ++I  +   G             QP + M  +LV  +  +G  R EE 
Sbjct: 74  LRGFAQDVVSYAALIEGFCETGRIDEAVELFGEMDQPDMHMYAALVKGLCKAG--RGEEG 131

Query: 365 YLAL-----------LRSFAQCGDVRG-------AGQITNIMRIEEFQPTLESCTLLVEA 406
            L L            R++A   D R        A ++   M  +   P + +CT ++ A
Sbjct: 132 LLMLRRMKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAVINA 191

Query: 407 YGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG 466
           Y + G    A    + M   G KP+     +++  +  +  + KA+ LL ++   G  P 
Sbjct: 192 YCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPD 251

Query: 467 PATYTVLVDWLGRLQLIN----EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522
             TY +L+    R Q I+     A +LL  +   G         +L +   + G   +A 
Sbjct: 252 AVTYNLLI----RGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQAC 307

Query: 523 QALGFLEAKKEQMGPDDFERIINGLLAGG 551
                LE +  +     F  +INGL   G
Sbjct: 308 SLFDSLETRGIKPNAVTFNSLINGLCKSG 336


>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
          Length = 1245

 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 79/344 (22%), Positives = 144/344 (41%), Gaps = 5/344 (1%)

Query: 242 KVAELV-----LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTST 296
           KV+E V     + E   Q +V  Y+ +++   +      A  +L+KM E  +  D+ T +
Sbjct: 163 KVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYS 222

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
            ++    + G +D A   F+ + + G +     YNS++     AG+   G  L+  M++ 
Sbjct: 223 TIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSR 282

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
            I  +   +  LL  F + G ++ A ++   M      P + +   L++ Y       +A
Sbjct: 283 EIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEA 342

Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476
            +  D M+R    PD     S+I  Y     +D  + +   + K G      TY++LV  
Sbjct: 343 NNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQG 402

Query: 477 LGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG 536
             +   I  AE+L  ++   G  P       L D     G  +KAL+    L+  K  +G
Sbjct: 403 FCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLG 462

Query: 537 PDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
              +  II G+  GG ++DA  +   +  +G   +      +IS
Sbjct: 463 IVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMIS 506



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 117/263 (44%), Gaps = 12/263 (4%)

Query: 218 LQPSRIDWINLLD------RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKEN 271
           + P+ I +  LLD      +L+E N +LY    E++        N+  Y+ L+D +  +N
Sbjct: 284 IVPNVITFNVLLDVFVKEGKLQEAN-ELY---KEMI--TRGISPNIITYNTLMDGYCMQN 337

Query: 272 CLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYN 331
            L +A  +L  M  N   PDIVT T L+  Y     +D   + F ++   G   +   Y+
Sbjct: 338 RLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYS 397

Query: 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391
            ++  +  +G+ KL   L   M++ G+      Y  LL      G +  A +I   ++  
Sbjct: 398 ILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKS 457

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
           +    +   T ++E   + G  + A + F  +   G KP+      MI+   KK  L +A
Sbjct: 458 KMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEA 517

Query: 452 LNLLLELEKDGFEPGPATYTVLV 474
             LL ++E+DG  P   TY  L+
Sbjct: 518 NILLRKMEEDGNAPNDCTYNTLI 540



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 108/245 (44%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  ++ L+D   KE  L++A  + K+M   GI P+I+T   L+  Y     L  A    
Sbjct: 287 NVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNML 346

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + +  +   PD   + S+I  Y    +   GM +   +   G+  +   Y  L++ F Q 
Sbjct: 347 DLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQS 406

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G ++ A ++   M      P + +  +L++     G  ++A   F+ + +          
Sbjct: 407 GKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMY 466

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I    K   ++ A NL   L   G +P   TYTV++  L +   ++EA  LL K+ E
Sbjct: 467 TTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEE 526

Query: 496 LGEAP 500
            G AP
Sbjct: 527 DGNAP 531



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/266 (19%), Positives = 121/266 (45%), Gaps = 12/266 (4%)

Query: 218 LQPSRIDWINLLD------RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKEN 271
           + P+ I +  L+D      RL E N  L   V            ++  ++ LI  +    
Sbjct: 319 ISPNIITYNTLMDGYCMQNRLSEANNMLDLMV------RNKCSPDIVTFTSLIKGYCMVK 372

Query: 272 CLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYN 331
            ++D  ++ + +++ G+V + VT ++LV  + ++G +  A+E F+ + SHG  PD   Y 
Sbjct: 373 RVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYG 432

Query: 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391
            ++    + G+ +  + + + +  S ++    +Y  ++    + G V  A  +   +  +
Sbjct: 433 ILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCK 492

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
             +P + + T+++    + G   +A      M   G+ P+D    ++I A+ +   L  +
Sbjct: 493 GVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTAS 552

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWL 477
             L+ E++  GF    ++  +++D L
Sbjct: 553 AKLIEEMKSCGFSADASSIKMVIDML 578



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 69/335 (20%), Positives = 131/335 (39%), Gaps = 18/335 (5%)

Query: 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318
           D+S+   A A+           K++  NGI  +I T  ++++ + +      A      +
Sbjct: 80  DFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKV 139

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
              G++PD   +N++I      G+    + LVD M+ +G +     Y +++    + GD 
Sbjct: 140 MKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDT 199

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             A  +   M     +  + + + ++++  + G  D A S F  M   G K       S+
Sbjct: 200 SLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSL 259

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           +    K    +    LL ++      P   T+ VL+D   +   + EA +L  ++   G 
Sbjct: 260 VRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGI 319

Query: 499 APPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDA 556
           +P      +L D Y       +A   L  +   + +  PD   F  +I G      + D 
Sbjct: 320 SPNIITYNTLMDGYCMQNRLSEANNMLDLMV--RNKCSPDIVTFTSLIKGYCMVKRVDDG 377

Query: 557 QRV------HGLME--------AQGFAASERLKVA 577
            +V       GL+          QGF  S ++K+A
Sbjct: 378 MKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLA 412


>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
 gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 141/322 (43%), Gaps = 6/322 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E+  + NV  YS +ID+  K+  + +A   L +M   GI P++VT + ++H +   G 
Sbjct: 108 MEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGR 167

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            + A   F+ +      PD   +N ++      G       + + MI  G+E +   Y A
Sbjct: 168 SNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNA 227

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+  +     +  A ++ NIM  +   P++ S  +L++ + ++G  D+A+     M    
Sbjct: 228 LMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKA 287

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD    ++++  + +      A  LL E+   G  P   TY++++D L +   ++EA 
Sbjct: 288 LTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAF 347

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
           +LL  + E    P   I   L       G  + A +    L  K  Q     +  +I+GL
Sbjct: 348 ELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGL 407

Query: 548 LAGGFLQDA------QRVHGLM 563
           L GG   +A        VHG +
Sbjct: 408 LKGGLSNEACELFRDMAVHGCL 429



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 82/375 (21%), Positives = 159/375 (42%), Gaps = 16/375 (4%)

Query: 214 WKELLQPSRIDWINLLDRLREQNTQLYFKVAELV-----LSEESFQTNVRDYSKLIDAHA 268
           +K  LQP+ + +  LL+ L  +      K+ + V     + +  ++ +V  YS +I+   
Sbjct: 39  FKLGLQPNHVTFSTLLNGLSSKA-----KIIDAVKLFDEMVKMGYEPDVITYSTIINGLC 93

Query: 269 KENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKK 328
           K      A ++LKKM E G  P++V  + ++    K   +  A E    + + G  P+  
Sbjct: 94  KMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVV 153

Query: 329 VYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIM 388
            Y+S++  + N G+     SL   M+   +      +  L+   ++ G +  A  +   M
Sbjct: 154 TYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETM 213

Query: 389 RIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLL 448
             +  +P + +   L++ Y      D+A+  F+ M+R G  P  R    +I  + K   +
Sbjct: 214 IEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRI 273

Query: 449 DKALNLLLELEKDGFEPGPATYTVLVDWL---GRLQLINEAEQLLGKISELGEAPPFKIQ 505
           D+A  LL E+      P   TY+ L+      GR Q   +A++LL ++   G  P     
Sbjct: 274 DEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQ---DAQKLLEEMRSYGLLPDLMTY 330

Query: 506 VSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEA 565
             + D   + G   +A + L  ++  K +     +  +I G+   G L+ A+ +   +  
Sbjct: 331 SIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNLFV 390

Query: 566 QGFAASERLKVALIS 580
           +G          +IS
Sbjct: 391 KGIQPDVVTYTVMIS 405



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/287 (20%), Positives = 127/287 (44%), Gaps = 1/287 (0%)

Query: 194 ITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEES 252
           I     +L +  + + L  +  E  + P  + +  L+D L ++   L  +     + E+ 
Sbjct: 158 ILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKG 217

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
            + NV  Y+ L+D +  ++ +++A+++   M   G  P + +  +L+  + K+G +D AK
Sbjct: 218 VEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAK 277

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
                +      PD   Y++++  +   G+P+    L++ M + G+      Y  +L   
Sbjct: 278 GLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGL 337

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + G +  A ++   M+  + +P +   T+L++     G  + AR  F  +   G +PD 
Sbjct: 338 CKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNLFVKGIQPDV 397

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
                MI+   K  L ++A  L  ++   G  P   TY V++    R
Sbjct: 398 VTYTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTYNVIIQGFLR 444



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 107/229 (46%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +VR Y+ LI  H K   +++A+ +L +M+   + PD VT + L+  + + G    A++  
Sbjct: 256 SVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLL 315

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E +RS+G  PD   Y+ ++      G       L+  M  S IE +  IY  L++     
Sbjct: 316 EEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNF 375

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A ++ + + ++  QP + + T+++    + G  ++A   F  M   G  P+    
Sbjct: 376 GKLEAARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTY 435

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
             +I  + +      A  L+ E+   GF    +T+ +L D   R ++I+
Sbjct: 436 NVIIQGFLRNGDTSNAGRLIEEMVGRGFSADSSTFQMLSDLESRDEIIS 484



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 134/308 (43%), Gaps = 10/308 (3%)

Query: 266 AHAKENCLEDAERILKKMNENGIVPDIVT-STVLVHMYSKAGNLDRAKEAFESLRSHGFQ 324
            H+  +    A  +L  M + G+ P+ VT ST+L  + SKA  +D  K  F+ +   G++
Sbjct: 21  CHSNHDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIIDAVK-LFDEMVKMGYE 79

Query: 325 PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQI 384
           PD   Y+++I      G   + + L+  M   G + +  +Y  ++ S  +   +  A + 
Sbjct: 80  PDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEF 139

Query: 385 TNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGK 444
            + M      P + + + ++  +   G  ++A S F  M+     PD      ++    K
Sbjct: 140 LSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSK 199

Query: 445 KNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKI 504
           + ++ +A  +   + + G EP   TY  L+D       ++EA++L   +   G AP  + 
Sbjct: 200 EGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRS 259

Query: 505 QVSLCDMYARAG--IEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVH 560
              L   + ++G   E K L A    E   + + PD   +  ++ G    G  QDAQ++ 
Sbjct: 260 YNILIKGHCKSGRIDEAKGLLA----EMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLL 315

Query: 561 GLMEAQGF 568
             M + G 
Sbjct: 316 EEMRSYGL 323



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 61/300 (20%), Positives = 119/300 (39%), Gaps = 39/300 (13%)

Query: 283 MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSH---GFQPDKKVYNSMIMAYVN 339
           M+ + I PD+ T T+L++ +  + N D    AF  L +    G QP+   +++++    +
Sbjct: 1   MDLSNIRPDVYTLTILINCFCHS-NHDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSS 59

Query: 340 AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLES 399
             +    + L D M+  G E     Y  ++    + G    A Q+  + ++EE       
Sbjct: 60  KAKIIDAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQL--LKKMEE------- 110

Query: 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELE 459
                                      G KP+    +++I +  K  L+ +A+  L E+ 
Sbjct: 111 --------------------------KGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMV 144

Query: 460 KDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEK 519
             G  P   TY+ ++     L   NEA  L  ++ E    P       L D  ++ G+  
Sbjct: 145 NRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMIL 204

Query: 520 KALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
           +A      +  K  +   + +  +++G  +   + +AQ++  +M  +G A S R    LI
Sbjct: 205 EAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILI 264


>gi|357130476|ref|XP_003566874.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Brachypodium distachyon]
          Length = 810

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 104/227 (45%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E+    N+  Y+  ID + +  C + A ++L  +   G+ PDIV    L++ + + GN
Sbjct: 567 MREKGLPPNIITYTSFIDGYCRTGCSDMALKMLNDVRRRGLQPDIVAYNALINGFCQEGN 626

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A +    L   G  P+  VYNS+I  Y N    K      + MI  GI      Y  
Sbjct: 627 MSHALQLLVILLKDGLAPNTVVYNSLITGYKNLNMMKEVSKFYESMIKGGIVADTSTYTT 686

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+  F++ G+V  A ++ + M  + + P   + T L     ++GD D A+   + M RL 
Sbjct: 687 LIDGFSKDGNVAFALELYSEMMAKGYIPDAFTFTALTHGLCRSGDIDGAKKLLEEMRRLD 746

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
            +P+      +I  Y +   L +A  L  E+   G +P   TY +LV
Sbjct: 747 VRPNVFIYNMLINGYLRDCKLQEAFRLHDEMLNMGIQPDDTTYDILV 793



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 80/411 (19%), Positives = 171/411 (41%), Gaps = 12/411 (2%)

Query: 155 IYGLDLSDPKWTEVAEKIHERGEMILPEEPKPITGKCKLITDKILSLEKEEDPSPLLAEW 214
           +YG+ +       + +K +E    +  +   P T +  L+   +L+  + +D   L  E 
Sbjct: 334 MYGVLIRGCDQVGMTQKAYELCRQMTGQGLLPSTFELSLVLKGLLNDRRWKDAVCLFEEM 393

Query: 215 KELLQPSRIDWINLLD------RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHA 268
            +   P    + NL+       +LRE    L+ +     + +   + ++  Y+ L+  + 
Sbjct: 394 ADSGLPDVFTYNNLIHWHCQAHKLREA-LNLFDR-----MKKAGVKPSINTYNSLLMGYC 447

Query: 269 KENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKK 328
           K+ C+++A ++  +M   G  P++VT   L+  Y    + D A    + ++ +G   +  
Sbjct: 448 KKGCMDEAVKLYSEMPMEGFKPNVVTYITLMRGYIAKKDFDNAYALLDEMKQNGVSCNDY 507

Query: 329 VYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIM 388
            YN +I       +      ++   ++ G   +   Y +++  F + G +  A  +   M
Sbjct: 508 TYNVLINGICMVDRVCEVDGMLKSFMSEGFIPTMMTYNSIINGFVKAGMMGSAFTVYQQM 567

Query: 389 RIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLL 448
           R +   P + + T  ++ Y + G  D A    + + R G +PD     ++I  + ++  +
Sbjct: 568 REKGLPPNIITYTSFIDGYCRTGCSDMALKMLNDVRRRGLQPDIVAYNALINGFCQEGNM 627

Query: 449 DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSL 508
             AL LL+ L KDG  P    Y  L+     L ++ E  +    + + G         +L
Sbjct: 628 SHALQLLVILLKDGLAPNTVVYNSLITGYKNLNMMKEVSKFYESMIKGGIVADTSTYTTL 687

Query: 509 CDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
            D +++ G    AL+    + AK        F  + +GL   G +  A+++
Sbjct: 688 IDGFSKDGNVAFALELYSEMMAKGYIPDAFTFTALTHGLCRSGDIDGAKKL 738



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 139/334 (41%), Gaps = 4/334 (1%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           E F+ NV  Y  L+  +  +   ++A  +L +M +NG+  +  T  VL++       +  
Sbjct: 465 EGFKPNVVTYITLMRGYIAKKDFDNAYALLDEMKQNGVSCNDYTYNVLINGICMVDRVCE 524

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
                +S  S GF P    YNS+I  +V AG      ++   M   G+  +   Y + + 
Sbjct: 525 VDGMLKSFMSEGFIPTMMTYNSIINGFVKAGMMGSAFTVYQQMREKGLPPNIITYTSFID 584

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
            + + G    A ++ N +R    QP + +   L+  + Q G+   A      +++ G  P
Sbjct: 585 GYCRTGCSDMALKMLNDVRRRGLQPDIVAYNALINGFCQEGNMSHALQLLVILLKDGLAP 644

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           +     S+I  Y   N++ +       + K G     +TYT L+D   +   +  A +L 
Sbjct: 645 NTVVYNSLITGYKNLNMMKEVSKFYESMIKGGIVADTSTYTTLIDGFSKDGNVAFALELY 704

Query: 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF--ERIINGLL 548
            ++   G  P      +L     R+G    A + L   E ++  + P+ F    +ING L
Sbjct: 705 SEMMAKGYIPDAFTFTALTHGLCRSGDIDGAKKLLE--EMRRLDVRPNVFIYNMLINGYL 762

Query: 549 AGGFLQDAQRVHGLMEAQGFAASERLKVALISSQ 582
               LQ+A R+H  M   G    +     L+S +
Sbjct: 763 RDCKLQEAFRLHDEMLNMGIQPDDTTYDILVSKK 796



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/313 (22%), Positives = 132/313 (42%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ LI  H + + L +A  +  +M + G+ P I T   L+  Y K G +D A + +
Sbjct: 400 DVFTYNNLIHWHCQAHKLREALNLFDRMKKAGVKPSINTYNSLLMGYCKKGCMDEAVKLY 459

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   GF+P+   Y +++  Y+         +L+D M  +G+  ++  Y  L+      
Sbjct: 460 SEMPMEGFKPNVVTYITLMRGYIAKKDFDNAYALLDEMKQNGVSCNDYTYNVLINGICMV 519

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
             V     +      E F PT+ +   ++  + +AG    A + +  M   G  P+    
Sbjct: 520 DRVCEVDGMLKSFMSEGFIPTMMTYNSIINGFVKAGMMGSAFTVYQQMREKGLPPNIITY 579

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            S I  Y +    D AL +L ++ + G +P    Y  L++   +   ++ A QLL  + +
Sbjct: 580 TSFIDGYCRTGCSDMALKMLNDVRRRGLQPDIVAYNALINGFCQEGNMSHALQLLVILLK 639

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
            G AP   +  SL   Y    + K+  +    +           +  +I+G    G +  
Sbjct: 640 DGLAPNTVVYNSLITGYKNLNMMKEVSKFYESMIKGGIVADTSTYTTLIDGFSKDGNVAF 699

Query: 556 AQRVHGLMEAQGF 568
           A  ++  M A+G+
Sbjct: 700 ALELYSEMMAKGY 712



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/302 (23%), Positives = 128/302 (42%), Gaps = 6/302 (1%)

Query: 216 ELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSE---ESFQTNVRDYSKLIDAHAKENC 272
           E  +P+ + +I L+   R    +  F  A  +L E        N   Y+ LI+     + 
Sbjct: 465 EGFKPNVVTYITLM---RGYIAKKDFDNAYALLDEMKQNGVSCNDYTYNVLINGICMVDR 521

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           + + + +LK     G +P ++T   +++ + KAG +  A   ++ +R  G  P+   Y S
Sbjct: 522 VCEVDGMLKSFMSEGFIPTMMTYNSIINGFVKAGMMGSAFTVYQQMREKGLPPNIITYTS 581

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
            I  Y   G   + + +++ +   G++     Y AL+  F Q G++  A Q+  I+  + 
Sbjct: 582 FIDGYCRTGCSDMALKMLNDVRRRGLQPDIVAYNALINGFCQEGNMSHALQLLVILLKDG 641

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P       L+  Y       +    ++ MI+ G   D     ++I  + K   +  AL
Sbjct: 642 LAPNTVVYNSLITGYKNLNMMKEVSKFYESMIKGGIVADTSTYTTLIDGFSKDGNVAFAL 701

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
            L  E+   G+ P   T+T L   L R   I+ A++LL ++  L   P   I   L + Y
Sbjct: 702 ELYSEMMAKGYIPDAFTFTALTHGLCRSGDIDGAKKLLEEMRRLDVRPNVFIYNMLINGY 761

Query: 513 AR 514
            R
Sbjct: 762 LR 763



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 73/328 (22%), Positives = 131/328 (39%), Gaps = 15/328 (4%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E  F T    Y  ++D   K   +E+A R+  +M + G   D++ +T L+  Y     
Sbjct: 253 MKEVGFDTCDFTYRTMVDVLVKTGRMEEALRVNDEMRDAGKKMDVIVATTLMRGYCLRQE 312

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A   F+     G  P K +Y  +I      G  +    L   M   G+  S      
Sbjct: 313 VGNALNLFKETLKDGIVPTKVMYGVLIRGCDQVGMTQKAYELCRQMTGQGLLPSTFELSL 372

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQ-PTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           +L+      D R    +     + +   P + +   L+  + QA    +A + FD M + 
Sbjct: 373 VLKGLLN--DRRWKDAVCLFEEMADSGLPDVFTYNNLIHWHCQAHKLREALNLFDRMKKA 430

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G KP      S++  Y KK  +D+A+ L  E+  +GF+P   TY  L+      +  + A
Sbjct: 431 GVKPSINTYNSLLMGYCKKGCMDEAVKLYSEMPMEGFKPNVVTYITLMRGYIAKKDFDNA 490

Query: 487 EQLLGKISELGEAP---PFKIQVS-LC--DMYARAGIEKKALQALGFLEAKKEQMGPDDF 540
             LL ++ + G +     + + ++ +C  D         K+  + GF+           +
Sbjct: 491 YALLDEMKQNGVSCNDYTYNVLINGICMVDRVCEVDGMLKSFMSEGFIPTMMT------Y 544

Query: 541 ERIINGLLAGGFLQDAQRVHGLMEAQGF 568
             IING +  G +  A  V+  M  +G 
Sbjct: 545 NSIINGFVKAGMMGSAFTVYQQMREKGL 572



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/215 (21%), Positives = 90/215 (41%), Gaps = 35/215 (16%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           LQP  + +  L++   ++    +     ++L ++    N   Y+ LI  +   N +++  
Sbjct: 607 LQPDIVAYNALINGFCQEGNMSHALQLLVILLKDGLAPNTVVYNSLITGYKNLNMMKEVS 666

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
           +  + M + GIV D  T T L+  +SK GN+  A E +  + + G+ PD   + +     
Sbjct: 667 KFYESMIKGGIVADTSTYTTLIDGFSKDGNVAFALELYSEMMAKGYIPDAFTFTA----- 721

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
                           +T G+ RS              GD+ GA ++   MR  + +P +
Sbjct: 722 ----------------LTHGLCRS--------------GDIDGAKKLLEEMRRLDVRPNV 751

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
               +L+  Y +     +A    D M+ +G +PDD
Sbjct: 752 FIYNMLINGYLRDCKLQEAFRLHDEMLNMGIQPDD 786



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 101/222 (45%), Gaps = 8/222 (3%)

Query: 283 MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
           M   G+VPDI + T L+   ++  +   A   F  +R  G++ D  ++++++ A +  G 
Sbjct: 148 MVARGVVPDIKSRTDLLIRTARGSSAKDALALFMEMRGRGYRVDAWMFDALMSACLKEGM 207

Query: 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402
            +  + L D M  + I+  + +Y   + +  + GD    G+   ++R E  +   ++C  
Sbjct: 208 HEDAVRLFDEMPGAEIDPDQRVYALAITALCKLGD---GGRALRMLR-EMKEVGFDTCDF 263

Query: 403 ----LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
               +V+   + G  ++A    D M   G K D     +++  Y  +  +  ALNL  E 
Sbjct: 264 TYRTMVDVLVKTGRMEEALRVNDEMRDAGKKMDVIVATTLMRGYCLRQEVGNALNLFKET 323

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
            KDG  P    Y VL+    ++ +  +A +L  +++  G  P
Sbjct: 324 LKDGIVPTKVMYGVLIRGCDQVGMTQKAYELCRQMTGQGLLP 365


>gi|410109879|gb|AFV61019.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           macrostachya]
          Length = 414

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 120/261 (45%), Gaps = 6/261 (2%)

Query: 218 LQPSRIDWINLLD---RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           L+PS + +  L++   RL + +     K A   +     Q +V  YS LI+   KE+ ++
Sbjct: 156 LRPSVVSFNTLMNGYIRLGDLDEGFRLKSA---MHASGVQPDVYTYSVLINGLCKESKMD 212

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           DA  +  +M + G+VP+ VT T L+  + K+G +D A E ++ + S    PD   YN++I
Sbjct: 213 DANELFDEMLDKGLVPNGVTFTTLIDGHCKSGRVDLAMEIYKQMLSQSLSPDLITYNTLI 272

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
                 G  K    L+D M   G++  +  Y  L+    + GD+  A +    M  E  +
Sbjct: 273 YGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIR 332

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
               + T L+    Q G    A      M+  G KPD      +I  + KK  +     L
Sbjct: 333 LDDVAYTALISGLCQEGRYLDAEKVLREMLSAGLKPDTGTYTMIINEFCKKGDVWTGSKL 392

Query: 455 LLELEKDGFEPGPATYTVLVD 475
           L E+++DG  P   TY VL++
Sbjct: 393 LKEMQRDGHVPSVVTYNVLMN 413



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 63/314 (20%), Positives = 147/314 (46%), Gaps = 7/314 (2%)

Query: 191 CKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWIN-LLDRLREQNTQLYFKVAELV-- 247
           C+ + + ++ L+  +       E  E   P+ + + N L+ R  ++      +VA+ V  
Sbjct: 93  CRKVLEHMMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKEGD---IRVAQSVFN 149

Query: 248 -LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
            +++   + +V  ++ L++ + +   L++  R+   M+ +G+ PD+ T +VL++   K  
Sbjct: 150 AITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKES 209

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            +D A E F+ +   G  P+   + ++I  +  +G+  L M +   M++  +      Y 
Sbjct: 210 KMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKSGRVDLAMEIYKQMLSQSLSPDLITYN 269

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+    + GD++ A  + + M ++  +P   + T L++   + GD + A  +   MI+ 
Sbjct: 270 TLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQE 329

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
             + DD    ++I+   ++     A  +L E+   G +P   TYT++++   +   +   
Sbjct: 330 NIRLDDVAYTALISGLCQEGRYLDAEKVLREMLSAGLKPDTGTYTMIINEFCKKGDVWTG 389

Query: 487 EQLLGKISELGEAP 500
            +LL ++   G  P
Sbjct: 390 SKLLKEMQRDGHVP 403



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/267 (20%), Positives = 109/267 (40%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E  +  ++  ++ L+    KE  +  A+ +   + + G+ P +V+   L++ Y + G+LD
Sbjct: 118 ECGYPASLYFFNILMHRFCKEGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLD 177

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
                  ++ + G QPD   Y+ +I       +      L D M+  G+  +   +  L+
Sbjct: 178 EGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLI 237

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               + G V  A +I   M  +   P L +   L+    + GD  QA    D M   G K
Sbjct: 238 DGHCKSGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLK 297

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     ++I    K+  L+ A      + ++        YT L+  L +     +AE++
Sbjct: 298 PDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAEKV 357

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAG 516
           L ++   G  P       + + + + G
Sbjct: 358 LREMLSAGLKPDTGTYTMIINEFCKKG 384


>gi|297823043|ref|XP_002879404.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325243|gb|EFH55663.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 605

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 146/324 (45%), Gaps = 6/324 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +I+A+ K       E+ILK M ++G+V + VT T+L+ +  K G ++  ++ F+ +R
Sbjct: 243 YNTIINAYLKHRDFSGVEKILKVMKKDGVVYNKVTYTLLIELSVKNGKMNDVEKLFDEMR 302

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G + D  VY S+I      G  K    L D +   G+  S   Y AL+    + G++ 
Sbjct: 303 ERGIESDIHVYTSLISWNCRKGNIKRAFLLFDELTEKGLLPSSHTYGALIDGVCKVGEMG 362

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  + N M+ +    T      L+  Y + G  D+A   +D M + G + D     ++ 
Sbjct: 363 AAEILMNEMQSKGVNITQVVFNTLINGYCRKGMIDEASMIYDVMEKKGFQADVFTCNTIA 422

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
           + + +    D+A   L  + + G      +YT L+D   +   + EA++L  ++S   E 
Sbjct: 423 SCFNRLKRYDEAKQWLFRMMEGGVRLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSS-KEV 481

Query: 500 PPFKIQVS-LCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQDA 556
            P  I  + +   Y + G  K+A +    ++A    M PD   +  +I+G      + +A
Sbjct: 482 QPNAITYNVMIYAYCKQGKVKEARKLWANMKA--NGMDPDSYTYTSLIHGECIADNVDEA 539

Query: 557 QRVHGLMEAQGFAASERLKVALIS 580
            R+   M  +G   +      +IS
Sbjct: 540 MRLFSEMGLKGLDQNSVTYTVMIS 563



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 72/335 (21%), Positives = 143/335 (42%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           V+ ++    N   Y+ LI+   K   + D E++  +M E GI  DI   T L+    + G
Sbjct: 265 VMKKDGVVYNKVTYTLLIELSVKNGKMNDVEKLFDEMRERGIESDIHVYTSLISWNCRKG 324

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           N+ RA   F+ L   G  P    Y ++I      G+      L++ M + G+  ++ ++ 
Sbjct: 325 NIKRAFLLFDELTEKGLLPSSHTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFN 384

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+  + + G +  A  I ++M  + FQ  + +C  +   + +    D+A+     M+  
Sbjct: 385 TLINGYCRKGMIDEASMIYDVMEKKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEG 444

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G +       ++I  Y K+  +++A  L +E+     +P   TY V++    +   + EA
Sbjct: 445 GVRLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKEVQPNAITYNVMIYAYCKQGKVKEA 504

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
            +L   +   G  P      SL      A    +A++    +  K        +  +I+G
Sbjct: 505 RKLWANMKANGMDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISG 564

Query: 547 LLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
           L   G   +A  ++  ++ +G+    ++  ALI S
Sbjct: 565 LSKAGKSDEAFGLYDEIKRKGYTIDNKVYTALIGS 599



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/342 (19%), Positives = 130/342 (38%), Gaps = 37/342 (10%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +SEE F+   + +  +   +      E+  R+   M + G+  D  +  V +    K   
Sbjct: 126 ISEEKFEFWEKFFDLVFRVYVDNGMFEEGLRVFDYMVKKGLSIDERSCIVFLVAAKKRRR 185

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D   E F  +   G +        ++      G+ +    L+      GI+     Y  
Sbjct: 186 IDLCLEFFRRMVDSGVKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSGKGIKPEAYTYNT 245

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++ ++ +  D  G  +I  +M+ +       + TLL+E   + G  +     FD M   G
Sbjct: 246 IINAYLKHRDFSGVEKILKVMKKDGVVYNKVTYTLLIELSVKNGKMNDVEKLFDEMRERG 305

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            + D     S+I+   +K  + +A  L  EL + G  P   TY  L+D + ++  +  AE
Sbjct: 306 IESDIHVYTSLISWNCRKGNIKRAFLLFDELTEKGLLPSSHTYGALIDGVCKVGEMGAAE 365

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
            L+ +                                   +++K   +    F  +ING 
Sbjct: 366 ILMNE-----------------------------------MQSKGVNITQVVFNTLINGY 390

Query: 548 LAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQ 589
              G + +A  ++ +ME +GF A +      I+S  FNR ++
Sbjct: 391 CRKGMIDEASMIYDVMEKKGFQA-DVFTCNTIAS-CFNRLKR 430


>gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera]
          Length = 653

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 88/358 (24%), Positives = 152/358 (42%), Gaps = 2/358 (0%)

Query: 216 ELLQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           E  QP+ + +  L++ L +  NT    ++    + + + Q NV  +S LID+  K+  + 
Sbjct: 169 EGFQPNVVTYGTLINGLCKVGNTSAAIRLLR-SMEQGNCQPNVVVFSTLIDSLCKDRQVT 227

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           +A  I  +M   GI P+IVT   L+H   K             +      PD    N+++
Sbjct: 228 EAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVV 287

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
            A    G       +VDMMI  G+E +   Y AL+       +V  A ++ + M  ++  
Sbjct: 288 DALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCV 347

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
             + S   L+  Y +    D+A   F+ M R    P+     ++I        L  A++L
Sbjct: 348 ANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISL 407

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
             E+   G  P   TY  L D+L + + +++A  LL  I      P  +I  ++ D   R
Sbjct: 408 FHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCR 467

Query: 515 AGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572
           AG  + A      L +K  Q     +  +I+GL   G L +A ++   M   G + ++
Sbjct: 468 AGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPND 525



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 73/350 (20%), Positives = 136/350 (38%), Gaps = 35/350 (10%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           Q +   ++ LI     E  + +A  +  KM   G  P++VT   L++   K GN   A  
Sbjct: 137 QPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIR 196

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
              S+     QP+  V++++I +     Q     ++   MIT GI  +   Y +L+    
Sbjct: 197 LLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLC 256

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD-- 431
           +  + +    + N M   +  P + +   +V+A  + G   +A    D MI  G +P+  
Sbjct: 257 KLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVV 316

Query: 432 ---------------------------DRCTASMIA------AYGKKNLLDKALNLLLEL 458
                                        C A++I+       Y K   +DKA+ L  E+
Sbjct: 317 TYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEM 376

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
            +    P   TY  L+  L  +  + +A  L  ++   G+ P      +L D   +    
Sbjct: 377 SRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHL 436

Query: 519 KKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
            KA+  L  +E          +  I++G+   G L+DA+ +   + ++G 
Sbjct: 437 DKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGL 486



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 126/305 (41%), Gaps = 51/305 (16%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ L+D H   N ++ A ++   M     V ++++   L++ Y K  ++D+A   F
Sbjct: 314 NVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLF 373

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG------------------ 357
           E +      P+   YN++I    + G+ +  +SL   M+  G                  
Sbjct: 374 EEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKN 433

Query: 358 ------------IERSE-----EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
                       IE S      +IY  +L    + G++  A  + + +  +  QP + + 
Sbjct: 434 RHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTY 493

Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIA-AYGKKNLLDKALNLLLELE 459
            +++    + G   +A   F  M + G  P+D CT ++I   + + N   + + LL E+ 
Sbjct: 494 NIMIHGLCKQGLLAEASKLFSEMNKNGCSPND-CTYNLITRGFLRNNEALRTIELLEEML 552

Query: 460 KDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI-----SELG---------EAPPFKIQ 505
             GF    +T T+LV  L    L    +Q+L KI       LG         EAP  K+ 
Sbjct: 553 ARGFSVDVSTTTLLVGMLSDDGLDQSVKQILCKIVILYERNLGETLLFQFWMEAPSEKLM 612

Query: 506 VSLCD 510
           V+ C+
Sbjct: 613 VTECE 617



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/288 (20%), Positives = 113/288 (39%)

Query: 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318
           D+++L+ + AK         + ++M+  GI PD+ T  ++++       +D A  A   +
Sbjct: 72  DFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSALAKI 131

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
              G QPD   + ++I      G+    + L D MI  G + +   Y  L+    + G+ 
Sbjct: 132 LKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNT 191

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             A ++   M     QP +   + L+++  +     +A + F  MI  G  P+     S+
Sbjct: 192 SAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSL 251

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           I    K         L+ E+      P   T   +VD L +  ++ EA  ++  +   G 
Sbjct: 252 IHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGV 311

Query: 499 APPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
            P      +L D +        A++    +  K        +  +ING
Sbjct: 312 EPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLING 359



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 46/251 (18%), Positives = 93/251 (37%)

Query: 271 NCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVY 330
           N L++A     +M      P  V    L+   +K  +          + S G  PD    
Sbjct: 49  NTLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTL 108

Query: 331 NSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRI 390
             +I +  +  +     S +  ++  G +     +  L+R     G +  A  + + M  
Sbjct: 109 AIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIG 168

Query: 391 EEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDK 450
           E FQP + +   L+    + G+   A      M +   +P+    +++I +  K   + +
Sbjct: 169 EGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTE 228

Query: 451 ALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCD 510
           A N+  E+   G  P   TY  L+  L +L        L+ ++ +    P      ++ D
Sbjct: 229 AFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVD 288

Query: 511 MYARAGIEKKA 521
              + G+  +A
Sbjct: 289 ALCKEGMVAEA 299


>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
          Length = 827

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 116/261 (44%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ +++ +A + CL D   +   M  +GI PD  T  VL+  Y+  G LD+A   F
Sbjct: 371 DVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIF 430

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +R HG +PD   Y ++I A    G+    M   + MI  G+   +  Y  L++ F   
Sbjct: 431 NEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTH 490

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A ++ + +        +   + ++    + G    A++ FD  + +G  PD    
Sbjct: 491 GSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVY 550

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
           + ++  Y     ++KAL +   +   G EP    Y  LV+   ++  I+E   L  ++ +
Sbjct: 551 SMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQ 610

Query: 496 LGEAPPFKIQVSLCDMYARAG 516
            G  P   +   + D   +AG
Sbjct: 611 RGIKPSTILYSIIIDGLFQAG 631



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 139/350 (39%), Gaps = 37/350 (10%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIV--PDIVTSTVLVHMYSKAGNLDRAKE 313
           +V  YS L+ +   +     A+ +L+ M E G V  P++V    ++  + K G++++A +
Sbjct: 194 DVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACD 253

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            F+ +   G  PD   YNS++ A   A       + +  M+   +  +   Y  L+  ++
Sbjct: 254 LFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYS 313

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD-- 431
             G  + A ++   MR     P + + ++L+ +  + G   +AR  FD M   G  PD  
Sbjct: 314 STGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVF 373

Query: 432 -----------DRCTASM----------------------IAAYGKKNLLDKALNLLLEL 458
                        C   M                      I AY    +LDKA+ +  E+
Sbjct: 374 SYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEM 433

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
              G +P   TY  ++  L R+  +++A +   ++ + G AP       L   +   G  
Sbjct: 434 RDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSL 493

Query: 519 KKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
            KA + +  +      +    F  IIN L   G + DAQ +  L    G 
Sbjct: 494 LKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGL 543



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 107/236 (45%), Gaps = 2/236 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI        L  A+ ++ ++  NG+  DIV  + +++   K G +  A+  F+   
Sbjct: 480 YNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTV 539

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G  PD  VY+ ++  Y   G+ +  + + D M+++GIE +  +Y  L+  + + G + 
Sbjct: 540 NVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRID 599

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
               +   M     +P+    +++++   QAG    A+  F  M   G   D  CT +++
Sbjct: 600 EGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTESGIAMDI-CTYNIV 658

Query: 440 A-AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
                K    D+A+ L  EL     +    T   ++D + + + + EA+ L   IS
Sbjct: 659 LRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASIS 714



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/278 (21%), Positives = 106/278 (38%), Gaps = 35/278 (12%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +   S   +V   S L+ +  K   +++A  +   M   G  PD+ +  ++++ Y+  G 
Sbjct: 328 MRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGC 387

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L    + F+ +   G  PD   +N +I AY N                            
Sbjct: 388 LVDMTDLFDLMLGDGIAPDFYTFNVLIKAYAN---------------------------- 419

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
                  CG +  A  I N MR    +P + +   ++ A  + G  D A   F+ MI  G
Sbjct: 420 -------CGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQG 472

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD      +I  +     L KA  L+ E+  +G       ++ +++ L +L  + +A+
Sbjct: 473 VAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQ 532

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
            +      +G  P   +   L D Y   G  +KAL+  
Sbjct: 533 NIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVF 570



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 62/331 (18%), Positives = 136/331 (41%), Gaps = 8/331 (2%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + +   + +V  Y  +I A  +   ++DA     +M + G+ PD      L+  +   G+
Sbjct: 433 MRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGS 492

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L +AKE    + ++G   D   ++S+I      G+     ++ D+ +  G+     +Y  
Sbjct: 493 LLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSM 552

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+  +   G +  A ++ + M     +P +     LV  Y + G  D+  S F  M++ G
Sbjct: 553 LMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRG 612

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            KP     + +I    +      A     E+ + G      TY +++  L + +  +EA 
Sbjct: 613 IKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAI 672

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALG--FLEAKKEQMGPD--DFERI 543
            L  ++  +      KI +   +       + + ++     F    + ++ P+   +  +
Sbjct: 673 FLFKELRAMN----VKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPNVVTYSIM 728

Query: 544 INGLLAGGFLQDAQRVHGLMEAQGFAASERL 574
           I  L+  G +++A+ +   M+  G   + RL
Sbjct: 729 ITNLIKEGLVEEAEDMFSSMQNAGCEPNSRL 759



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 105/278 (37%), Gaps = 36/278 (12%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS L+D +     +E A R+   M   GI P++V    LV+ Y K G +D     F  + 
Sbjct: 550 YSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREML 609

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF--AQCGD 377
             G +P   +Y+ +I     AG+          M  SGI      Y  +LR     +C D
Sbjct: 610 QRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFD 669

Query: 378 --------VRGAGQITNIM-------------RIEE------------FQPTLESCTLLV 404
                   +R      NI+             R+EE              P + + ++++
Sbjct: 670 EAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPNVVTYSIMI 729

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
               + G  ++A   F  M   G +P+ R    ++    KKN + +A   L ++++  F 
Sbjct: 730 TNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFS 789

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLL-GKISELGEAPP 501
               T  +LVD         E  + L  K   L EA P
Sbjct: 790 LEHLTAMLLVDLFSSKGTCREQIRFLPAKYHFLAEASP 827



 Score = 43.9 bits (102), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 42/207 (20%), Positives = 93/207 (44%), Gaps = 8/207 (3%)

Query: 211 LAEWKELLQ----PSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDA 266
           L+ ++E+LQ    PS I +  ++D L +    +  K+    ++E     ++  Y+ ++  
Sbjct: 602 LSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTESGIAMDICTYNIVLRG 661

Query: 267 HAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPD 326
             K  C ++A  + K++    +  +I+T   ++    +   ++ AK+ F S+      P+
Sbjct: 662 LFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPN 721

Query: 327 KKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITN 386
              Y+ MI   +  G  +    +   M  +G E +  +   ++R   +  ++  AG    
Sbjct: 722 VVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAGAY-- 779

Query: 387 IMRIEEFQPTLESCT--LLVEAYGQAG 411
           + +I+E   +LE  T  LLV+ +   G
Sbjct: 780 LSKIDERNFSLEHLTAMLLVDLFSSKG 806


>gi|357130244|ref|XP_003566760.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g40400-like [Brachypodium distachyon]
          Length = 579

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 124/274 (45%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L E+ F+ +V  Y+ L+  + +   L+DA  +   M   G+ PD+V+ TVL+    KAG 
Sbjct: 240 LEEQGFEPDVVTYNTLLSGYCRRGKLQDALHLFGVMPPRGVEPDLVSHTVLMDGLCKAGR 299

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L+ A+  F+ +   G  PD   Y+ +I  Y N  + +    L+  M+ SG+        A
Sbjct: 300 LNDARRMFDRMVHSGVSPDAIAYSVLIAGYCNEQRVREARLLLMEMVGSGLSSEGFALRA 359

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++ S  + G +     + + +R       LES   L+ A  +   P  AR  F +M+  G
Sbjct: 360 VIESHVKVGKLLTCLNLVSPLRKYGVVIPLESYNCLIGALCEDMRPHAARGLFKWMVEDG 419

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
           H P       ++    + + +D AL++ +E+      P   TY  LV  L RL    + +
Sbjct: 420 HSPSLEMYNMILDCLCQCDSVDDALDVKVEMSSREVRPDFHTYQALVTCLCRLGKSLDGK 479

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKA 521
            ++ ++ E G  P   I  +L   + + G   +A
Sbjct: 480 SVMAEMIESGLQPNEAICTALVCGFCKEGYLDRA 513



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 61/289 (21%), Positives = 106/289 (36%), Gaps = 35/289 (12%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS--- 303
           V+     + ++  ++ L+D   K   L DA R+  +M  +G+ PD +  +VL+  Y    
Sbjct: 274 VMPPRGVEPDLVSHTVLMDGLCKAGRLNDARRMFDRMVHSGVSPDAIAYSVLIAGYCNEQ 333

Query: 304 --------------------------------KAGNLDRAKEAFESLRSHGFQPDKKVYN 331
                                           K G L         LR +G     + YN
Sbjct: 334 RVREARLLLMEMVGSGLSSEGFALRAVIESHVKVGKLLTCLNLVSPLRKYGVVIPLESYN 393

Query: 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391
            +I A     +P     L   M+  G   S E+Y  +L    QC  V  A  +   M   
Sbjct: 394 CLIGALCEDMRPHAARGLFKWMVEDGHSPSLEMYNMILDCLCQCDSVDDALDVKVEMSSR 453

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
           E +P   +   LV    + G     +S    MI  G +P++    +++  + K+  LD+A
Sbjct: 454 EVRPDFHTYQALVTCLCRLGKSLDGKSVMAEMIESGLQPNEAICTALVCGFCKEGYLDRA 513

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
             +L     D       +Y  L+      +  +E+ +L  ++ +LG  P
Sbjct: 514 ELILKAFVLDFQLHCNESYNALMRAYCMTRSTSESLELQNRMLDLGFVP 562



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 75/175 (42%)

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL 349
           PD V    L+   S+AG  D    A   +     +P+   +N ++ A       +     
Sbjct: 177 PDTVAFNALLAALSRAGRFDELWAARAVMARAEVRPNTHTFNILVTALCRGEDAERAQGF 236

Query: 350 VDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409
           ++ +   G E     Y  LL  + + G ++ A  +  +M     +P L S T+L++   +
Sbjct: 237 LEELEEQGFEPDVVTYNTLLSGYCRRGKLQDALHLFGVMPPRGVEPDLVSHTVLMDGLCK 296

Query: 410 AGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
           AG  + AR  FD M+  G  PD    + +IA Y  +  + +A  LL+E+   G  
Sbjct: 297 AGRLNDARRMFDRMVHSGVSPDAIAYSVLIAGYCNEQRVREARLLLMEMVGSGLS 351



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 63/293 (21%), Positives = 117/293 (39%), Gaps = 4/293 (1%)

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL 349
           P+  T  +LV    +  + +RA+   E L   GF+PD   YN+++  Y   G+ +  + L
Sbjct: 212 PNTHTFNILVTALCRGEDAERAQGFLEELEEQGFEPDVVTYNTLLSGYCRRGKLQDALHL 271

Query: 350 VDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409
             +M   G+E     +  L+    + G +  A ++ + M      P   + ++L+  Y  
Sbjct: 272 FGVMPPRGVEPDLVSHTVLMDGLCKAGRLNDARRMFDRMVHSGVSPDAIAYSVLIAGYCN 331

Query: 410 AGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPAT 469
                +AR     M+  G   +     ++I ++ K   L   LNL+  L K G      +
Sbjct: 332 EQRVREARLLLMEMVGSGLSSEGFALRAVIESHVKVGKLLTCLNLVSPLRKYGVVIPLES 391

Query: 470 YTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLE 529
           Y  L+  L      + A  L   + E G +P  ++   + D   +      AL     +E
Sbjct: 392 YNCLIGALCEDMRPHAARGLFKWMVEDGHSPSLEMYNMILDCLCQCDSVDDALDV--KVE 449

Query: 530 AKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
               ++ PD   ++ ++  L   G   D + V   M   G   +E +  AL+ 
Sbjct: 450 MSSREVRPDFHTYQALVTCLCRLGKSLDGKSVMAEMIESGLQPNEAICTALVC 502



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 65/134 (48%)

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           ALL + ++ G          +M   E +P   +  +LV A  +  D ++A+   + +   
Sbjct: 184 ALLAALSRAGRFDELWAARAVMARAEVRPNTHTFNILVTALCRGEDAERAQGFLEELEEQ 243

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G +PD     ++++ Y ++  L  AL+L   +   G EP   ++TVL+D L +   +N+A
Sbjct: 244 GFEPDVVTYNTLLSGYCRRGKLQDALHLFGVMPPRGVEPDLVSHTVLMDGLCKAGRLNDA 303

Query: 487 EQLLGKISELGEAP 500
            ++  ++   G +P
Sbjct: 304 RRMFDRMVHSGVSP 317



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 31/159 (19%), Positives = 66/159 (41%), Gaps = 2/159 (1%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E+    ++  Y+ ++D   + + ++DA  +  +M+   + PD  T   LV    + G   
Sbjct: 417 EDGHSPSLEMYNMILDCLCQCDSVDDALDVKVEMSSREVRPDFHTYQALVTCLCRLGKSL 476

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
             K     +   G QP++ +  +++  +   G       ++   +        E Y AL+
Sbjct: 477 DGKSVMAEMIESGLQPNEAICTALVCGFCKEGYLDRAELILKAFVLDFQLHCNESYNALM 536

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYG 408
           R++        + ++ N M    F P+ E+C  L+  YG
Sbjct: 537 RAYCMTRSTSESLELQNRMLDLGFVPSSETCRSLI--YG 573



 Score = 39.7 bits (91), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 48/114 (42%)

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           L+ A  +AG  D+  +    M R   +P+      ++ A  +    ++A   L ELE+ G
Sbjct: 185 LLAALSRAGRFDELWAARAVMARAEVRPNTHTFNILVTALCRGEDAERAQGFLEELEEQG 244

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
           FEP   TY  L+    R   + +A  L G +   G  P       L D   +AG
Sbjct: 245 FEPDVVTYNTLLSGYCRRGKLQDALHLFGVMPPRGVEPDLVSHTVLMDGLCKAG 298


>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 545

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 155/332 (46%), Gaps = 4/332 (1%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           + FQ +   Y  LI+   +    + A ++L++++   + P++V  + ++    K   ++ 
Sbjct: 157 QGFQLDQVSYGTLINGLCRVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVND 216

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A + +  + S    PD   Y+S+I  +   G+ K  + L + MI+  I  +   +  L+ 
Sbjct: 217 AFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILID 276

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
            F + G VR A  +  +M  +  +  + +   L++ Y      ++A+S F+ M + G  P
Sbjct: 277 GFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTP 336

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           D    + MI  + K  ++D+A+ L  E+      P   TY  LVD L +    + A +L+
Sbjct: 337 DVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALELV 396

Query: 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFER--IINGLL 548
            ++ + G+        S+ D   +     KA+  L   + K++ + PD F    +INGL 
Sbjct: 397 DEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLT--KIKEKGIQPDIFTYTVLINGLC 454

Query: 549 AGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
             G L DAQ+V   +  +G++ +     +LI+
Sbjct: 455 KVGRLDDAQKVFEDLLVKGYSPNIYTYTSLIN 486



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 55/244 (22%), Positives = 119/244 (48%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           V+ +++ + +V  Y+ L+D +     +  A+ +   M + G+ PD+ + +++++ + K  
Sbjct: 293 VMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIK 352

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            +D A + FE +      P+   YNS++     +G+    + LVD M   G   +   Y 
Sbjct: 353 MVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALELVDEMHDRGQPSNIITYN 412

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           ++L +  +   V  A  +   ++ +  QP + + T+L+    + G  D A+  F+ ++  
Sbjct: 413 SILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVK 472

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G+ P+     S+I  +  K   D+ L +L +++ +G  P   TY +L+  L      ++A
Sbjct: 473 GYSPNIYTYTSLINGFCNKGFFDEGLAMLSKMKDNGCIPNAITYEILIHSLFEKDENDKA 532

Query: 487 EQLL 490
           E+LL
Sbjct: 533 EKLL 536



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/315 (22%), Positives = 139/315 (44%), Gaps = 10/315 (3%)

Query: 216 ELLQPSRIDWINLLD-----RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKE 270
           +L++P+ + +  ++D     +L      LY    E+V   +    +V  YS LI      
Sbjct: 192 KLVRPNVVMYSTIIDSMCKDKLVNDAFDLY---CEMV--SKRISPDVVTYSSLISGFCVV 246

Query: 271 NCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVY 330
             L+ A  +  +M  + I P++ T ++L+  + K G +  AK     +     + D   Y
Sbjct: 247 GKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTY 306

Query: 331 NSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRI 390
           NS++  Y    Q     SL ++M   G+      Y  ++  F +   V  A ++   M  
Sbjct: 307 NSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHC 366

Query: 391 EEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDK 450
           ++  P + +   LV+   ++G    A    D M   G   +     S++ A  K N +DK
Sbjct: 367 KQIFPNVVTYNSLVDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNHVDK 426

Query: 451 ALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCD 510
           A+ LL ++++ G +P   TYTVL++ L ++  +++A+++   +   G +P      SL +
Sbjct: 427 AIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLIN 486

Query: 511 MYARAGIEKKALQAL 525
            +   G   + L  L
Sbjct: 487 GFCNKGFFDEGLAML 501



 Score = 45.4 bits (106), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 1/126 (0%)

Query: 210 LLAEWKELLQPSRIDWIN-LLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHA 268
           L+ E  +  QPS I   N +LD + + N      V    + E+  Q ++  Y+ LI+   
Sbjct: 395 LVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLC 454

Query: 269 KENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKK 328
           K   L+DA+++ + +   G  P+I T T L++ +   G  D        ++ +G  P+  
Sbjct: 455 KVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGLAMLSKMKDNGCIPNAI 514

Query: 329 VYNSMI 334
            Y  +I
Sbjct: 515 TYEILI 520


>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
          Length = 580

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 137/310 (44%), Gaps = 4/310 (1%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           L+ A   +  M   G  P++V+   ++H YS  GN++ A+   +++R  G +PD   Y S
Sbjct: 189 LKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGS 248

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I      G+ +    L D M+  G+  +   Y  L+  +   GD+  A    + M  + 
Sbjct: 249 LISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKG 308

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P++ +  LLV A    G   +A      M + G  PD      +I  Y +     +A 
Sbjct: 309 IMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKRAF 368

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
           +L  E+   G EP   TYT L+  L R   + EA+ L  KI + G +P   +  ++ D +
Sbjct: 369 DLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGH 428

Query: 513 ARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQDAQRVHGLMEAQGFAA 570
              G  ++A   L   E  ++ + PD+  F  ++ G    G +++A+ +   M+ +G   
Sbjct: 429 CANGNVERAFMLLK--EMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKP 486

Query: 571 SERLKVALIS 580
                  LIS
Sbjct: 487 DHISYNTLIS 496



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 120/253 (47%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ L+ A   E  + +A+ ++K+M + GI+PD +T  +L++ YS+ GN  RA +  
Sbjct: 312 SVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDLH 371

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             + S G +P    Y S+I       + K    L + ++  G+     ++ A++      
Sbjct: 372 NEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCAN 431

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G+V  A  +   M  +   P   +   L++   + G  ++AR   D M   G KPD    
Sbjct: 432 GNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISY 491

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I+ YG++  +  A  +  E+   GF P   TY  L+  L + Q  + AE+LL ++  
Sbjct: 492 NTLISGYGRRGDIKDAFXVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVN 551

Query: 496 LGEAPPFKIQVSL 508
            G +P     +SL
Sbjct: 552 KGISPDDSTYLSL 564



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 143/338 (42%), Gaps = 6/338 (1%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F+ NV  Y+ +I  ++    +E A RIL  M   GI PD  T   L+    K G L+ A 
Sbjct: 204 FKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEAS 263

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
             F+ +   G  P+   YN++I  Y N G  +   S  D M+  GI  S   Y  L+ + 
Sbjct: 264 GLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHAL 323

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
              G +  A  +   MR +   P   +  +L+  Y + G+  +A    + M+  G +P  
Sbjct: 324 FMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLSKGIEPTH 383

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               S+I    ++N + +A +L  ++   G  P    +  ++D       +  A  LL +
Sbjct: 384 VTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKE 443

Query: 493 ISELGEAPPFKIQV-SLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLA 549
           +      PP ++   +L     R G  ++A   L   E K   + PD   +  +I+G   
Sbjct: 444 MDR-KSVPPDEVTFNTLMQGRCREGKVEEARMLLD--EMKXRGIKPDHISYNTLISGYGR 500

Query: 550 GGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQ 587
            G ++DA  V   M + GF  +     ALI     N++
Sbjct: 501 RGDIKDAFXVRDEMLSIGFNPTLLTYNALIKCLCKNQE 538



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 91/217 (41%), Gaps = 35/217 (16%)

Query: 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
           G L +A+E    +   GF+P+   YN++I  Y                            
Sbjct: 187 GKLKKAREFIGFMEGLGFKPNVVSYNTIIHGY---------------------------- 218

Query: 366 LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
                  +  G++ GA +I + MR++  +P   +   L+    + G  ++A   FD M+ 
Sbjct: 219 -------SSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVE 271

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
           +G  P+     ++I  Y  K  L++A +   E+ K G  P  +TY +LV  L     + E
Sbjct: 272 IGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGE 331

Query: 486 AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522
           A+ ++ ++ + G  P       L + Y+R G  K+A 
Sbjct: 332 ADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKRAF 368



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 50/236 (21%), Positives = 93/236 (39%), Gaps = 45/236 (19%)

Query: 218 LQPSRIDWINLLDRLREQN-----TQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC 272
           ++P+ + + +L+  L  +N       L+ K+ +     +    +V  ++ +ID H     
Sbjct: 379 IEPTHVTYTSLIYVLSRRNRMKEADDLFEKILD-----QGVSPDVIMFNAMIDGHCANGN 433

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           +E A  +LK+M+   + PD VT   L+    + G ++ A+   + ++  G +PD   YN+
Sbjct: 434 VERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNT 493

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I  Y   G  K    + D M++ G                                   
Sbjct: 494 LISGYGRRGDIKDAFXVRDEMLSIG----------------------------------- 518

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLL 448
           F PTL +   L++   +  + D A      M+  G  PDD    S+I   G  + L
Sbjct: 519 FNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGNVDTL 574


>gi|357114648|ref|XP_003559110.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic-like [Brachypodium distachyon]
          Length = 875

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 113/245 (46%), Gaps = 4/245 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS ++D +A+    E+   +  +   +G  PD V   VL  M+ +AG+ D  +  F  +R
Sbjct: 247 YSAVLDVYAQLRMKEEVLALFDRARGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFREMR 306

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +P+  VYN+++ A    G+P L  SL + M   G+E +     A+ + + +    R
Sbjct: 307 EVGIKPNIFVYNALLEALGKTGKPGLARSLFEEMTAEGVEPNARTLTAVAKIYGRARWGR 366

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM----IRLGHKPDDRCT 435
            A Q+   MR ++       C  L+      G   +A   F+ M    +    KPD    
Sbjct: 367 DALQLWEQMRQKKIPADSILCNTLLSMCADVGLVAEAEQLFEEMKDPELSDVPKPDKWSY 426

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            +MI  YG     D+AL L  E+  +G EP   +YT+++  LG+   I +A ++L    E
Sbjct: 427 TAMINIYGSIKDADRALQLFAEMLAEGIEPNIMSYTIVIQCLGKTNRIQDAAEVLEAGLE 486

Query: 496 LGEAP 500
            G  P
Sbjct: 487 RGLKP 491



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 134/315 (42%), Gaps = 11/315 (3%)

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG---FQPDKKVYN 331
           + ER+   M  +G+  D +T + L+    +     +A E FE + S G     PD+  Y+
Sbjct: 189 ECERLALDMVASGVPLDNITYSTLITAARRCRQFAKAVEWFERMYSPGGGGVLPDEVTYS 248

Query: 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391
           +++  Y      +  ++L D    SG +     +  L + F + GD  G   +   MR  
Sbjct: 249 AVLDVYAQLRMKEEVLALFDRARGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFREMREV 308

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
             +P +     L+EA G+ G P  ARS F+ M   G +P+ R   ++   YG+      A
Sbjct: 309 GIKPNIFVYNALLEALGKTGKPGLARSLFEEMTAEGVEPNARTLTAVAKIYGRARWGRDA 368

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI--SELGEAP-PFKIQ-VS 507
           L L  ++ +            L+     + L+ EAEQL  ++   EL + P P K    +
Sbjct: 369 LQLWEQMRQKKIPADSILCNTLLSMCADVGLVAEAEQLFEEMKDPELSDVPKPDKWSYTA 428

Query: 508 LCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEA 565
           + ++Y       +ALQ   F E   E + P+   +  +I  L     +QDA  V      
Sbjct: 429 MINIYGSIKDADRALQL--FAEMLAEGIEPNIMSYTIVIQCLGKTNRIQDAAEVLEAGLE 486

Query: 566 QGFAASERLKVALIS 580
           +G    +RL   L+S
Sbjct: 487 RGLKPDDRLCGCLLS 501


>gi|255660860|gb|ACU25599.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
          Length = 418

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 123/267 (46%), Gaps = 18/267 (6%)

Query: 211 LAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAEL--------VLSEESFQTNVRDYSK 262
           + +W   L+PS + +  L++         Y K+ +L         +     Q +V  YS 
Sbjct: 162 ITKWG--LRPSVVSFNTLMNG--------YIKLGDLDEGFRLKNAMRASGVQPDVYTYSV 211

Query: 263 LIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG 322
           LI+   KE+ +++A  +  +M +NG+VP+ VT T L+  + K G LD A + +  + + G
Sbjct: 212 LINGLCKESRMDEANGLFGEMLDNGLVPNGVTFTTLIDGHCKNGRLDLAMDIYRQMLNQG 271

Query: 323 FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAG 382
           F PD   YN++I      G  K    L+D M   G++  +  Y  L+    + GD+  A 
Sbjct: 272 FSPDVVTYNTLIYGLCKKGDLKQARYLLDEMSRKGLKPDKITYTTLIDGSCKEGDLETAF 331

Query: 383 QITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAY 442
           ++   M  E  +      T L+    Q G    A      M+R+G KPDD     ++  +
Sbjct: 332 ELRERMIKESIRLDDVVYTALIFGLCQEGRAVDAEKMLREMLRVGLKPDDETYTMIMNEF 391

Query: 443 GKKNLLDKALNLLLELEKDGFEPGPAT 469
            KK  + KA  LL E++++G  P   T
Sbjct: 392 CKKGDVKKASELLREMQRNGRVPCVVT 418



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/298 (21%), Positives = 135/298 (45%), Gaps = 18/298 (6%)

Query: 214 WKELLQ---PSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQT--------NVRDYSK 262
           +KE+L+   P+ + + N+L          + K  E+ L++  F          +V  ++ 
Sbjct: 124 YKEILECGYPASLYFFNIL-------MHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNT 176

Query: 263 LIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG 322
           L++ + K   L++  R+   M  +G+ PD+ T +VL++   K   +D A   F  +  +G
Sbjct: 177 LMNGYIKLGDLDEGFRLKNAMRASGVQPDVYTYSVLINGLCKESRMDEANGLFGEMLDNG 236

Query: 323 FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAG 382
             P+   + ++I  +   G+  L M +   M+  G       Y  L+    + GD++ A 
Sbjct: 237 LVPNGVTFTTLIDGHCKNGRLDLAMDIYRQMLNQGFSPDVVTYNTLIYGLCKKGDLKQAR 296

Query: 383 QITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAY 442
            + + M  +  +P   + T L++   + GD + A    + MI+   + DD    ++I   
Sbjct: 297 YLLDEMSRKGLKPDKITYTTLIDGSCKEGDLETAFELRERMIKESIRLDDVVYTALIFGL 356

Query: 443 GKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
            ++     A  +L E+ + G +P   TYT++++   +   + +A +LL ++   G  P
Sbjct: 357 CQEGRAVDAEKMLREMLRVGLKPDDETYTMIMNEFCKKGDVKKASELLREMQRNGRVP 414



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 120/276 (43%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E  +  ++  ++ L+    KE  +  A+ +   + + G+ P +V+   L++ Y K G+LD
Sbjct: 129 ECGYPASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLD 188

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
                  ++R+ G QPD   Y+ +I       +      L   M+ +G+  +   +  L+
Sbjct: 189 EGFRLKNAMRASGVQPDVYTYSVLINGLCKESRMDEANGLFGEMLDNGLVPNGVTFTTLI 248

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               + G +  A  I   M  + F P + +   L+    + GD  QAR   D M R G K
Sbjct: 249 DGHCKNGRLDLAMDIYRQMLNQGFSPDVVTYNTLIYGLCKKGDLKQARYLLDEMSRKGLK 308

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     ++I    K+  L+ A  L   + K+        YT L+  L +     +AE++
Sbjct: 309 PDKITYTTLIDGSCKEGDLETAFELRERMIKESIRLDDVVYTALIFGLCQEGRAVDAEKM 368

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
           L ++  +G  P  +    + + + + G  KKA + L
Sbjct: 369 LREMLRVGLKPDDETYTMIMNEFCKKGDVKKASELL 404



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 125/295 (42%), Gaps = 12/295 (4%)

Query: 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV 350
           DI   + L+  Y ++G +  A E F   + H F+       +++   +     KL     
Sbjct: 65  DIYVFSGLITAYLESGFIRDAIECFRLTKKHSFRVPFDTCRNVLEHLMKXKYFKLVWGFY 124

Query: 351 DMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410
             ++  G   S   +  L+  F + G++R A  + + +     +P++ S   L+  Y + 
Sbjct: 125 KEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKL 184

Query: 411 GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATY 470
           GD D+     + M   G +PD    + +I    K++ +D+A  L  E+  +G  P   T+
Sbjct: 185 GDLDEGFRLKNAMRASGVQPDVYTYSVLINGLCKESRMDEANGLFGEMLDNGLVPNGVTF 244

Query: 471 TVLVDWL---GRLQL-INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALG 526
           T L+D     GRL L ++   Q+L +    G +P      +L     + G  K+A   L 
Sbjct: 245 TTLIDGHCKNGRLDLAMDIYRQMLNQ----GFSPDVVTYNTLIYGLCKKGDLKQARYLLD 300

Query: 527 FLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
             E  ++ + PD   +  +I+G    G L+ A  +   M  +     + +  ALI
Sbjct: 301 --EMSRKGLKPDKITYTTLIDGSCKEGDLETAFELRERMIKESIRLDDVVYTALI 353


>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
 gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
          Length = 758

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 83/357 (23%), Positives = 157/357 (43%), Gaps = 6/357 (1%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEES---FQTNVRDYSKLIDAHAKENCLE 274
           +Q   + + +LL+ L E +     K+ E V +E +    Q +V   + LI A  + + + 
Sbjct: 158 VQADTVVFNHLLNVLVEGSK---LKLLESVYNEMTGRGIQPDVVTLNTLIKALCRAHQVR 214

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
            A  +L++M+ +G+ PD  T T L+  + + G+++ A      +   G  P     N +I
Sbjct: 215 TAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLI 274

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
             Y   G+ +  +  +   I  G E  +  Y   +    Q G V  A ++ ++M  E   
Sbjct: 275 NGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHD 334

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P + +   ++    + G+ D+A+   + M+  G  PD     ++I A   +N L++AL+L
Sbjct: 335 PDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDL 394

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
             EL   G  P   T+ +L++ L ++   +   +L  ++   G  P       L D    
Sbjct: 395 ARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCS 454

Query: 515 AGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAAS 571
            G    AL  L  +E+         +  II+ L     +++A+ V   M+AQG + S
Sbjct: 455 MGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRS 511



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 87/377 (23%), Positives = 161/377 (42%), Gaps = 21/377 (5%)

Query: 187 ITGKCKL--ITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQ-NTQLYFKV 243
           I G CK+  + D +  +++E           +  +P ++ +   +  L +  +     KV
Sbjct: 274 INGYCKMGRVEDALGYIQQE---------IADGFEPDQVTYNTFVHGLCQNGHVSHALKV 324

Query: 244 AELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS 303
            +L+L +E    +V  Y+ +I+  +K   L++A+ I+ +M + G +PD  T   L+   S
Sbjct: 325 MDLML-QEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALS 383

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363
               L+ A +    L   G  PD   +N +I A    G P LG+ L + M +SG    E 
Sbjct: 384 SQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEV 443

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
            Y  L+      G +  A  + N M       +  +   +++A  +    ++A   FD M
Sbjct: 444 TYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQM 503

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483
              G         ++I    K   +D A  L+ ++ K+G +P   TY  ++    +   I
Sbjct: 504 DAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNI 563

Query: 484 NEAEQLLGKISELGEAPPFKIQV----SLCDMYARAGIEKKALQALGFLEAKKEQMGPDD 539
            +A  +L  ++  G    F+I V    +L +   +AG  + AL+ L  +  K  +  P  
Sbjct: 564 KKAADILETMTANG----FEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKA 619

Query: 540 FERIINGLLAGGFLQDA 556
           +  +I  L     L+DA
Sbjct: 620 YNPVIQSLFRRNNLRDA 636



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 93/413 (22%), Positives = 156/413 (37%), Gaps = 73/413 (17%)

Query: 242 KVAELVLSEESFQTNVRD---YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVL 298
           + A L+L E S      D   ++ L+    +E  +E A R+  KM E G  P  VT  VL
Sbjct: 214 RTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVL 273

Query: 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
           ++ Y K G ++ A    +   + GF+PD+  YN+ +      G     + ++D+M+  G 
Sbjct: 274 INGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGH 333

Query: 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIM-----------------------RIEE--- 392
           +     Y  ++   ++ G++  A  I N M                       R+EE   
Sbjct: 334 DPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALD 393

Query: 393 ---------FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYG 443
                      P + +  +L+ A  + GDP      F+ M   G  PD+     +I    
Sbjct: 394 LARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLC 453

Query: 444 KKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG---EAP 500
               L  AL+LL E+E +G      TY  ++D L +   I EAE++  ++   G    A 
Sbjct: 454 SMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAV 513

Query: 501 PFKIQV--------------------------------SLCDMYARAGIEKKALQALGFL 528
            F   +                                S+   Y + G  KKA   L  +
Sbjct: 514 TFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETM 573

Query: 529 EAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
            A   ++    +  +INGL   G  Q A ++   M  +G   + +    +I S
Sbjct: 574 TANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQS 626



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 103/219 (47%), Gaps = 1/219 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +IDA  K+  +E+AE +  +M+  GI    VT   L+    KA  +D A E  E + 
Sbjct: 480 YNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMV 539

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G QP+   YNS++  Y   G  K    +++ M  +G E     Y  L+    + G  +
Sbjct: 540 KEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQ 599

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++   MRI+  +PT ++   ++++  +  +   A + F  M  +G  PD      + 
Sbjct: 600 VALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALNLFREMTEVGEPPDALTYKIVF 659

Query: 440 AAYGK-KNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
            +  +    + +A + L+E+   GF P  +++ +L + L
Sbjct: 660 RSLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRMLAEGL 698



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 110/266 (41%), Gaps = 4/266 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L+ +    +V  ++ LI+A  K        R+ ++M  +G  PD VT  +L+      G 
Sbjct: 398 LTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGK 457

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L  A +    + S+G       YN++I A     + +    + D M   GI RS   +  
Sbjct: 458 LGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNT 517

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    +   +  A ++   M  E  QP   +   ++  Y + G+  +A    + M   G
Sbjct: 518 LIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANG 577

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            + D     ++I    K      AL LL  +   G  P P  Y  ++  L R   + +A 
Sbjct: 578 FEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDAL 637

Query: 488 QLLGKISELGEAP---PFKIQV-SLC 509
            L  +++E+GE P    +KI   SLC
Sbjct: 638 NLFREMTEVGEPPDALTYKIVFRSLC 663



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 88/421 (20%), Positives = 170/421 (40%), Gaps = 54/421 (12%)

Query: 196 DKILS-LEKEEDPSPLL-----AEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLS 249
           D++L+ L ++ DP   L     A  +E   PS   +  ++ +L    T   F + E ++ 
Sbjct: 57  DRLLAALREQSDPEAALRMLNSALAREDFAPSSAVYEEIVQKL---GTAGAFDLMEGLVR 113

Query: 250 E---ESFQTNVRDYSKLIDAHAKENCLEDA-ERILKKMNEN--GIVPDIVTSTVLVHMYS 303
           E   E  Q         ++++A+    +DA + +L +++ +  G+  D V    L+++  
Sbjct: 114 EMRREGHQVRAVVVRSFVESYARLRRFDDAVDLVLNQLDNDTFGVQADTVVFNHLLNVLV 173

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363
           +   L   +  +  +   G QPD    N++I A   A Q +  + +++ M + G+   E 
Sbjct: 174 EGSKLKLLESVYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDET 233

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAG------------ 411
            +  L++ F + G +  A ++   M      PT  +  +L+  Y + G            
Sbjct: 234 TFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQE 293

Query: 412 -----DPDQARSN------------------FDYMIRLGHKPDDRCTASMIAAYGKKNLL 448
                +PDQ   N                   D M++ GH PD     ++I    K   L
Sbjct: 294 IADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGEL 353

Query: 449 DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSL 508
           D+A  ++ ++   G  P   T+  L+  L     + EA  L  +++  G +P       L
Sbjct: 354 DEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNIL 413

Query: 509 CDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQDAQRVHGLMEAQ 566
            +   + G     ++   F E K     PD+  +  +I+ L + G L +A  +   ME+ 
Sbjct: 414 INALCKVGDPHLGIRL--FEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESN 471

Query: 567 G 567
           G
Sbjct: 472 G 472



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 104/244 (42%), Gaps = 1/244 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LID       L +A  +L +M  NG     VT   ++    K   ++ A+E F+ + 
Sbjct: 445 YNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMD 504

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G       +N++I     A +      L++ M+  G++ +   Y ++L  + + G+++
Sbjct: 505 AQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIK 564

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  I   M    F+  + +   L+    +AG    A      M   G +P  +    +I
Sbjct: 565 KAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVI 624

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR-LQLINEAEQLLGKISELGE 498
            +  ++N L  ALNL  E+ + G  P   TY ++   L R    I EA   L ++   G 
Sbjct: 625 QSLFRRNNLRDALNLFREMTEVGEPPDALTYKIVFRSLCRGGGPIKEAFDFLVEMVNKGF 684

Query: 499 APPF 502
            P F
Sbjct: 685 MPEF 688



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 1/178 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + +E  Q N   Y+ ++  + K+  ++ A  IL+ M  NG   D+VT   L++   KAG 
Sbjct: 538 MVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLCKAGR 597

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
              A +    +R  G +P  K YN +I +       +  ++L   M   G       Y  
Sbjct: 598 TQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALNLFREMTEVGEPPDALTYKI 657

Query: 368 LLRSFAQCGD-VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
           + RS  + G  ++ A      M  + F P   S  +L E     G  D   S  + +I
Sbjct: 658 VFRSLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRMLAEGLLNLGMDDYLISAIELII 715



 Score = 40.8 bits (94), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 66/153 (43%), Gaps = 5/153 (3%)

Query: 194 ITDKILSLEKEEDPSPLLAEW-KELLQPSRIDWINLLDRLREQNTQLYFKVAELV--LSE 250
           + D +   ++ +D + L+ +  KE LQP+ I + ++L    +Q      K A+++  ++ 
Sbjct: 518 LIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGN--IKKAADILETMTA 575

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
             F+ +V  Y  LI+   K    + A ++L+ M   GI P       ++    +  NL  
Sbjct: 576 NGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRD 635

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343
           A   F  +   G  PD   Y  +  +    G P
Sbjct: 636 ALNLFREMTEVGEPPDALTYKIVFRSLCRGGGP 668


>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 137/300 (45%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           L+PS + +  L+D    +         +  + ++     +  Y+ LI A   E   ++AE
Sbjct: 322 LRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAE 381

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
            ++K++ E GI PD +T  +L++ Y +  N  +A    + + + G +P KK Y S++   
Sbjct: 382 CMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVL 441

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
               + K    L   + + G+     ++ AL+       +V+GA ++   M   +  P  
Sbjct: 442 SKKNRMKEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDE 501

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
            +   +++ + + G  ++AR  FD M R G KPD     ++I+ Y ++  +  A  +  E
Sbjct: 502 VTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNE 561

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI 517
           +   GF P   TY  LV  L + Q  + AE+LL ++   G  P      +L +  A+  I
Sbjct: 562 MLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIAKVNI 621



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 145/330 (43%), Gaps = 8/330 (2%)

Query: 244 AELVLSEESF----QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLV 299
           A  VL  E F    +++V  ++ +I+   KE  L+ A+  +  M  +G+ P+IVT   +V
Sbjct: 204 AAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIV 263

Query: 300 HMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
           H Y  +G ++ A     +++    +PD   Y S+I      G+ +    + + M+  G+ 
Sbjct: 264 HGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLR 323

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
            S  IY  L+  F   G++  A    + M  +   PT+ +   L+ A       D+A   
Sbjct: 324 PSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECM 383

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
              +   G  PD      +I  Y +     KA  L  E+   G +P   TYT L+  L +
Sbjct: 384 IKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSK 443

Query: 480 LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD 539
              + EA+ L  KI+  G  P   +  +L D +      K A + L   +  + ++ PD+
Sbjct: 444 KNRMKEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFELLK--DMDRMKVPPDE 501

Query: 540 --FERIINGLLAGGFLQDAQRVHGLMEAQG 567
             F  I+ G    G +++A+ +   M+ +G
Sbjct: 502 VTFNTIMQGHCREGKVEEARELFDEMKRRG 531



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 92/407 (22%), Positives = 171/407 (42%), Gaps = 9/407 (2%)

Query: 186 PITGKCKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAE 245
           P    C  +    L L + E    L AE   L   S +   N++  +  +  +L  K  +
Sbjct: 184 PTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLK-KAKD 242

Query: 246 LV--LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS 303
            V  +     + N+  Y+ ++  +     +E A+ IL  M    I PD  T   L+    
Sbjct: 243 FVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMC 302

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363
           K G L+ A + FE +   G +P   +YN++I  + N G   +  +  D M+  GI  +  
Sbjct: 303 KQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMS 362

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
            Y +L+ +         A  +   ++ +   P   +  +L+  Y +  +  +A    D M
Sbjct: 363 TYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEM 422

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483
           +  G KP  +   S++    KKN + +A +L  ++  +G  P    +  L+D       +
Sbjct: 423 LASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNV 482

Query: 484 NEAEQLLGKISELGEAPPFKIQV-SLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DF 540
             A +LL  +  + + PP ++   ++   + R G  ++A +   F E K+  + PD   F
Sbjct: 483 KGAFELLKDMDRM-KVPPDEVTFNTIMQGHCREGKVEEAREL--FDEMKRRGIKPDHISF 539

Query: 541 ERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQ 587
             +I+G    G ++DA RV   M   GF  +     AL+     N++
Sbjct: 540 NTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQE 586



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 112/266 (42%), Gaps = 2/266 (0%)

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           V DY  LI +    N  ++A      M E G++P I T   L+ ++ K    + A   + 
Sbjct: 153 VFDY--LIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYA 210

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
            +     +     +N MI      G+ K     V  M TSG++ +   Y  ++  +   G
Sbjct: 211 EMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSG 270

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
            V  A  I   M+ ++ +P   +   L+    + G  ++A   F+ M++ G +P      
Sbjct: 271 RVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYN 330

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
           ++I  +  K  LD A     E+ K G  P  +TY  L+  L   Q  +EAE ++ +I E 
Sbjct: 331 TLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEK 390

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKAL 522
           G +P       L + Y R    KKA 
Sbjct: 391 GISPDAITYNILINGYCRCANAKKAF 416



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 94/196 (47%)

Query: 258 RDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFES 317
           + Y+ L+   +K+N +++A+ + KK+   G++PD++    L+  +    N+  A E  + 
Sbjct: 432 KTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFELLKD 491

Query: 318 LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
           +      PD+  +N+++  +   G+ +    L D M   GI+     +  L+  +++ GD
Sbjct: 492 MDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGD 551

Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
           ++ A ++ N M    F PT+ +   LV+   +  + D A      M+  G  PDD    +
Sbjct: 552 IKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFT 611

Query: 438 MIAAYGKKNLLDKALN 453
           +I    K N+ D+  N
Sbjct: 612 LIEGIAKVNIPDENKN 627


>gi|42570531|ref|NP_850859.2| SNF1-like protein kinase [Arabidopsis thaliana]
 gi|75160582|sp|Q8S9D1.1|PP395_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g21222; AltName: Full=SNF1-like protein kinase AtC401
 gi|19071860|dbj|BAB85674.1| SNF1-like protein kinase [Arabidopsis thaliana]
 gi|332005563|gb|AED92946.1| SNF1-like protein kinase [Arabidopsis thaliana]
          Length = 831

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 87/383 (22%), Positives = 167/383 (43%), Gaps = 46/383 (12%)

Query: 221 SRIDWIN-LLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERI 279
           SR   +N L++R R Q     F      L EE  + ++  Y+ L+ A  ++        +
Sbjct: 321 SRTKLMNGLIERGRPQEAHSIFNT----LIEEGHKPSLITYTTLVTALTRQKHFHSLLSL 376

Query: 280 LKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339
           + K+ +NG+ PD +    +++  S++GNLD+A + FE ++  G +P    +N++I  Y  
Sbjct: 377 ISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGK 436

Query: 340 AGQPKLGMSLVDMMI------------------------------------TSGIERSEE 363
            G+ +    L+DMM+                                    + G++    
Sbjct: 437 IGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVV 496

Query: 364 IYLALLRSFAQCGDVRGA-GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
            +  L +++A+ G    A   I   M   + +P + +C  +V  Y + G  ++A   F  
Sbjct: 497 TFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYR 556

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
           M  LG  P+     S+I  +   N +D    ++  +E+ G +P   T++ L++    +  
Sbjct: 557 MKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGD 616

Query: 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--F 540
           +   E++   + E G  P       L   YARAG  +KA Q L   + +K  + P+   +
Sbjct: 617 MKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILN--QMRKFGVRPNVVIY 674

Query: 541 ERIINGLLAGGFLQDAQRVHGLM 563
            +II+G  + G ++ A +V+  M
Sbjct: 675 TQIISGWCSAGEMKKAMQVYKKM 697



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/264 (22%), Positives = 122/264 (46%), Gaps = 2/264 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAE-RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA 314
           +V  ++ L  A+A+      AE  I+ +M  N + P++ T   +V+ Y + G ++ A   
Sbjct: 494 DVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRF 553

Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
           F  ++  G  P+  V+NS+I  ++N         +VD+M   G++     +  L+ +++ 
Sbjct: 554 FYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSS 613

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
            GD++   +I   M      P + + ++L + Y +AG+P++A    + M + G +P+   
Sbjct: 614 VGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVI 673

Query: 435 TASMIAAYGKKNLLDKALNLLLELEK-DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
              +I+ +     + KA+ +  ++    G  P   TY  L+   G  +   +AE+LL  +
Sbjct: 674 YTQIISGWCSAGEMKKAMQVYKKMCGIVGLSPNLTTYETLIWGFGEAKQPWKAEELLKDM 733

Query: 494 SELGEAPPFKIQVSLCDMYARAGI 517
                 P  K    + D +   G+
Sbjct: 734 EGKNVVPTRKTMQLIADGWKSIGV 757



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 88/184 (47%), Gaps = 6/184 (3%)

Query: 234 EQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIV 293
           E+  + ++++ EL         N+  ++ LI      N ++    ++  M E G+ PD+V
Sbjct: 548 EEALRFFYRMKEL-----GVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVV 602

Query: 294 TSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMM 353
           T + L++ +S  G++ R +E +  +   G  PD   ++ +   Y  AG+P+    +++ M
Sbjct: 603 TFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQM 662

Query: 354 ITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIM-RIEEFQPTLESCTLLVEAYGQAGD 412
              G+  +  IY  ++  +   G+++ A Q+   M  I    P L +   L+  +G+A  
Sbjct: 663 RKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGIVGLSPNLTTYETLIWGFGEAKQ 722

Query: 413 PDQA 416
           P +A
Sbjct: 723 PWKA 726



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/265 (21%), Positives = 119/265 (44%), Gaps = 2/265 (0%)

Query: 246 LVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKA 305
           ++ S  +   +VR  +KL++   +    ++A  I   + E G  P ++T T LV   ++ 
Sbjct: 308 VICSGGTTCGDVRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQ 367

Query: 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
            +          +  +G +PD  ++N++I A   +G     M + + M  SG + +   +
Sbjct: 368 KHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTF 427

Query: 366 LALLRSFAQCGDVRGAGQITNIM-RIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
             L++ + + G +  + ++ ++M R E  QP   +C +LV+A+      ++A +    M 
Sbjct: 428 NTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQ 487

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLL-ELEKDGFEPGPATYTVLVDWLGRLQLI 483
             G KPD     ++  AY +      A ++++  +  +  +P   T   +V+       +
Sbjct: 488 SYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKM 547

Query: 484 NEAEQLLGKISELGEAPPFKIQVSL 508
            EA +   ++ ELG  P   +  SL
Sbjct: 548 EEALRFFYRMKELGVHPNLFVFNSL 572



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/360 (20%), Positives = 154/360 (42%), Gaps = 25/360 (6%)

Query: 227 NLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNEN 286
           NL+ R+ + N      + E +L +  F+   +DY   +    KE  L D E + K   E 
Sbjct: 243 NLIVRILDPNPMTRITIPE-ILEDVWFK---KDYKPAVFEEKKEANLADVEAVFKDSEEG 298

Query: 287 GI---------------VPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYN 331
            +                 D+ + T L++   + G    A   F +L   G +P    Y 
Sbjct: 299 RVQLRSFPCVICSGGTTCGDVRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYT 358

Query: 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391
           +++ A          +SL+  +  +G++    ++ A++ + ++ G++  A +I   M+  
Sbjct: 359 TLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKES 418

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH-KPDDRCTASMIAAYGKKNLLDK 450
             +PT  +   L++ YG+ G  +++    D M+R    +P+DR    ++ A+  +  +++
Sbjct: 419 GCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEE 478

Query: 451 ALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL-LGKISELGEAPPFKIQVSLC 509
           A N++ +++  G +P   T+  L     R+     AE + + ++      P  +   ++ 
Sbjct: 479 AWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIV 538

Query: 510 DMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQG 567
           + Y   G  ++AL+   F   K+  + P+   F  +I G L    +     V  LME  G
Sbjct: 539 NGYCEEGKMEEALRF--FYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFG 596


>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
 gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
          Length = 471

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 141/321 (43%), Gaps = 4/321 (1%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E     N   Y+ LI+   K+  +E A ++L++M   G VPD +T   ++    + G + 
Sbjct: 142 ERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVS 201

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            AK+ F+S+ S G+ PD   YN ++ A    G+    M L   +I  G       Y ++L
Sbjct: 202 EAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSIL 261

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
              A+  ++  A ++   M      P   + ++++  + +A   D A    + M ++G  
Sbjct: 262 LGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAV 321

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD      ++    K NL+DKA  L   +  +G  P   +Y+V+++ L +   +++A  L
Sbjct: 322 PDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVL 381

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGL 547
             ++ E    P       L D   +AG   +A   L  +        PD   +  ++NGL
Sbjct: 382 FDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTC--SGCAPDYVAYNTLMNGL 439

Query: 548 LAGGFLQDAQRVHGLMEAQGF 568
              G    A R+   M+ +GF
Sbjct: 440 RKQGRHIQADRLTQAMKEKGF 460



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 147/337 (43%), Gaps = 40/337 (11%)

Query: 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318
           +Y+ LID +AK+  +++A R+ ++M   G+ P I T   L++ + K   +  A E F+++
Sbjct: 45  EYNILIDGYAKKGRVDEANRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTM 104

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMS-LVDMMITSG-------------------- 357
              GF+PD   Y+++I      G+    +  L   MI  G                    
Sbjct: 105 AEKGFEPDVVTYSTIISGLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDEN 164

Query: 358 IERSEEI---------------YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402
           IER+ ++               Y  +L    + G V  A Q  + M    + P + +   
Sbjct: 165 IERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNG 224

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           L++A  + G  D+A   F  +I  G+ PD     S++    +K+ +D+A  +  ++   G
Sbjct: 225 LLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASG 284

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522
             P  ATY++++    R + +++A ++L ++S++G  P       L D   +  +  KA 
Sbjct: 285 CAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAH 344

Query: 523 QALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQ 557
           +   F         PD   +  ++NGL     + DA+
Sbjct: 345 EL--FSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDAR 379



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 81/357 (22%), Positives = 156/357 (43%), Gaps = 9/357 (2%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAEL--VLSEESFQTNVRDYSKLIDAHAKENCLED 275
           L+PS   + +LL+   ++      +  EL   ++E+ F+ +V  YS +I    K   + +
Sbjct: 74  LEPSIYTYNSLLNAFCKETKMK--EAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTE 131

Query: 276 A-ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           A E +  KM E G   + V    L++   K  N++RA +  E + S G+ PD   YN+++
Sbjct: 132 ALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTIL 191

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
                 G+        D M + G       Y  LL +  + G    A ++   +  + + 
Sbjct: 192 SGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYM 251

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P   +   ++    +  + D+A   F  M+  G  P+    + +++ + +   +D A  +
Sbjct: 252 PDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKV 311

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
           L E+ K G  P   TY +L+D L +  L+++A +L   + + G AP   +  S+  +   
Sbjct: 312 LEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDI-VSYSVV-LNGL 369

Query: 515 AGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
               K     + F    + ++ PD   F  +++GL   G L +A+ +   M   G A
Sbjct: 370 CKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCA 426



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 144/354 (40%), Gaps = 44/354 (12%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N   +  ++ +  K+  L D  ++ ++M +NGI PD +   +L+  Y+K G +D A   +
Sbjct: 7   NRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRLY 66

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E + S G +P    YNS++ A+    + K  M L   M   G E     Y  ++    + 
Sbjct: 67  EEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKT 126

Query: 376 GDV-------------RGAGQIT--------------NIMR----IEE-----FQPTLES 399
           G V             RG    T              NI R    +EE     + P   +
Sbjct: 127 GKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNIT 186

Query: 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELE 459
              ++    + G   +A+  FD M   G+ PD      ++ A  K+   D+A+ L  ++ 
Sbjct: 187 YNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVI 246

Query: 460 KDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEK 519
             G+ P   TY  ++  L R   ++EAE++  K+   G AP       +   + RA   K
Sbjct: 247 AKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRA---K 303

Query: 520 KALQALGFLEAKKEQMG--PD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
           K   A   LE +  ++G  PD   +  +++GL     +  A  +   M   G A
Sbjct: 304 KVDDAHKVLE-EMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCA 356



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 122/281 (43%), Gaps = 1/281 (0%)

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL 349
           P+  T  V++  + K G L    + FE +  +G  PD   YN +I  Y   G+      L
Sbjct: 6   PNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRL 65

Query: 350 VDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409
            + M++ G+E S   Y +LL +F +   ++ A ++   M  + F+P + + + ++    +
Sbjct: 66  YEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCK 125

Query: 410 AGDPDQARSN-FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPA 468
            G   +A    F  MI  G   +     ++I    K   +++A  LL E+   G+ P   
Sbjct: 126 TGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNI 185

Query: 469 TYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFL 528
           TY  ++  L R+  ++EA+Q    +   G +P       L D   + G   +A++    +
Sbjct: 186 TYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDV 245

Query: 529 EAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
            AK        +  I+ GL     + +A+ +   M A G A
Sbjct: 246 IAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCA 286



 Score = 41.2 bits (95), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 78/184 (42%), Gaps = 7/184 (3%)

Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD 449
           + E  P   +  ++++++ + G        F+ M+  G  PD      +I  Y KK  +D
Sbjct: 1   MRECSPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVD 60

Query: 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLC 509
           +A  L  E+   G EP   TY  L++   +   + EA +L   ++E G  P      ++ 
Sbjct: 61  EANRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTII 120

Query: 510 DMYARAGIEKKALQALGFLEAKKEQMGPD----DFERIINGLLAGGFLQDAQRVHGLMEA 565
               + G   K  +AL  L  K  + G       +  +INGL     ++ A ++   M +
Sbjct: 121 SGLCKTG---KVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMAS 177

Query: 566 QGFA 569
           +G+ 
Sbjct: 178 KGYV 181


>gi|223635627|sp|Q9SZ20.2|PP339_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g26800
          Length = 514

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 119/274 (43%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + +     NV  YS LI    K   L DAER L +M+   I P+++T + L+  Y+K G 
Sbjct: 219 MKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALIDAYAKRGK 278

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L +    ++ +      P+   Y+S+I       +    + ++D+MI+ G   +   Y  
Sbjct: 279 LSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPNVVTYST 338

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L   F +   V    ++ + M          SC  L++ Y QAG  D A   F YM   G
Sbjct: 339 LANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVFGYMTSNG 398

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P+ R    ++A       ++KAL+    ++K   +    TYT+++  + +  ++ EA 
Sbjct: 399 LIPNIRSYNIVLAGLFANGEVEKALSRFEHMQKTRNDLDIITYTIMIHGMCKACMVKEAY 458

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKA 521
            L  K+      P FK    +     RAG+  +A
Sbjct: 459 DLFYKLKFKRVEPDFKAYTIMIAELNRAGMRTEA 492



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 107/234 (45%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  +S LIDA+AK   L   + + K M +  I P++ T + L++       +D A +  
Sbjct: 262 NVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKML 321

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + + S G  P+   Y+++   +  + +   G+ L+D M   G+  +      L++ + Q 
Sbjct: 322 DLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQA 381

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A  +   M      P + S  +++      G+ ++A S F++M +  +  D    
Sbjct: 382 GKIDLALGVFGYMTSNGLIPNIRSYNIVLAGLFANGEVEKALSRFEHMQKTRNDLDIITY 441

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
             MI    K  ++ +A +L  +L+    EP    YT+++  L R  +  EA+ L
Sbjct: 442 TIMIHGMCKACMVKEAYDLFYKLKFKRVEPDFKAYTIMIAELNRAGMRTEADAL 495



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/277 (22%), Positives = 121/277 (43%)

Query: 280 LKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339
           L KM + GI PDIVT++ LV+ +  + ++  A      +   G + D  V   +I     
Sbjct: 146 LGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDTLCK 205

Query: 340 AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLES 399
                  + ++  M   GI  +   Y +L+    + G +  A +  + M  ++  P + +
Sbjct: 206 NRLVVPALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVIT 265

Query: 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELE 459
            + L++AY + G   +  S +  MI++   P+    +S+I      N +D+A+ +L  + 
Sbjct: 266 FSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMI 325

Query: 460 KDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEK 519
             G  P   TY+ L +   +   +++  +LL  + + G A       +L   Y +AG   
Sbjct: 326 SKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKID 385

Query: 520 KALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDA 556
            AL   G++ +         +  ++ GL A G ++ A
Sbjct: 386 LALGVFGYMTSNGLIPNIRSYNIVLAGLFANGEVEKA 422



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 80/172 (46%)

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
           E  P L +C +LV  + +   P  A S    M++LG +PD    +S++  +   N +  A
Sbjct: 118 EISPDLYTCNILVNCFCRCFQPSSALSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDA 177

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
           + +  ++EK G +      T+L+D L + +L+  A ++L ++ + G +P      SL   
Sbjct: 178 VYVAGQMEKMGIKRDVVVDTILIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITG 237

Query: 512 YARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLM 563
             ++G    A + L  +++KK       F  +I+     G L     V+ +M
Sbjct: 238 LCKSGRLADAERRLHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMM 289


>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 594

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 142/331 (42%), Gaps = 11/331 (3%)

Query: 230 DRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIV 289
           +RL  +   L++ +  + +S       V  Y+ LI         + A  + K+M E  + 
Sbjct: 257 NRLVNEAVDLFYHMRSIGISP-----TVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMK 311

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL 349
           PD+VT ++LV    K G +  A   F  +     +PD   Y+S+I     +   K   +L
Sbjct: 312 PDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTL 371

Query: 350 VDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409
           ++ M++  I      +   +  F + G V  A  I N+M     +P + +   L++ Y  
Sbjct: 372 LNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCL 431

Query: 410 AGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPAT 469
               D+AR  FD M+  G  PD      +I  Y K   +D+A  L  E+   G  P   T
Sbjct: 432 HSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSIT 491

Query: 470 YTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLE 529
           +T L+  L +      A++L  K+   G  P      +L   + + G      +AL   E
Sbjct: 492 HTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHG---HLDEALALFE 548

Query: 530 A-KKEQMGPDDF--ERIINGLLAGGFLQDAQ 557
           A KK Q+ P+    + ++ G+   G L+DA+
Sbjct: 549 ALKKSQLKPNHVICKILLGGMCKAGKLEDAK 579



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 128/284 (45%), Gaps = 2/284 (0%)

Query: 211 LAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKE 270
           + EW   ++P  + +  L+D L ++   L        + + + + ++  YS LI    K 
Sbjct: 305 MLEWN--MKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKS 362

Query: 271 NCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVY 330
           +  +++  +L +M    I PD+VT ++ V ++ K G +  A+     +   G +P+   Y
Sbjct: 363 SLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTY 422

Query: 331 NSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRI 390
           NS++  Y    Q      + D+M+  G       Y  L++ + +   +  A Q+ + M  
Sbjct: 423 NSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSH 482

Query: 391 EEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDK 450
           +   P   + T L+    QAG P  A+  F  M   G  PD    +++++ + K   LD+
Sbjct: 483 KGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGHLDE 542

Query: 451 ALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
           AL L   L+K   +P      +L+  + +   + +A++L   +S
Sbjct: 543 ALALFEALKKSQLKPNHVICKILLGGMCKAGKLEDAKELFSSLS 586



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/302 (21%), Positives = 129/302 (42%), Gaps = 4/302 (1%)

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           V  YS +ID+  K   + +A  +   M   GI P +VT   L++    +G   +A   F+
Sbjct: 244 VVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFK 303

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
            +     +PD   ++ ++ A    G     +S+   MI   +E     Y +L+    +  
Sbjct: 304 EMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSS 363

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
             + +  + N M     +P + + ++ V+ + + G   +A+S  + MI  G +P+     
Sbjct: 364 LWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYN 423

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
           S++  Y   + +D+A  +   +   G  P   +Y +L+    + + I+EA+QL  ++S  
Sbjct: 424 SLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHK 483

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQ 554
           G  P      +L     +AG    A +   F +       PD   +  +++G    G L 
Sbjct: 484 GLTPNSITHTTLISGLCQAGRPYAAKEL--FKKMGSHGCPPDLITYSTLLSGFCKHGHLD 541

Query: 555 DA 556
           +A
Sbjct: 542 EA 543



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 73/369 (19%), Positives = 150/369 (40%), Gaps = 21/369 (5%)

Query: 206 DPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYS--KL 263
           +P P + ++ +LL          L R++      Y  V  +    E F  +   Y+   L
Sbjct: 99  NPFPCITQFNQLLAA--------LVRMKH-----YDSVVSIYRKMEFFGVSCSVYTLTIL 145

Query: 264 IDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGF 323
           I+     + +     +L K+ + G  P I+T   L++     G +  A E  + + S G+
Sbjct: 146 INCLCHLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLCIEGRIVEAMEQLDYIMSRGY 205

Query: 324 QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQ 383
           QP    +  ++      G+    +  +  M+    E     Y  ++ S  +   V  A  
Sbjct: 206 QPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVD 265

Query: 384 ITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYG 443
           +   MR     PT+ +   L+     +G   QA   F  M+    KPD    + ++ A  
Sbjct: 266 LFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDALC 325

Query: 444 KKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP--- 500
           K+ ++ +AL++  ++ +   EP   TY+ L+  + +  L  E+  LL ++      P   
Sbjct: 326 KEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVV 385

Query: 501 PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVH 560
            F I V   D++ + G+  +A   +  +  +  +     +  +++G      + +A++V 
Sbjct: 386 TFSIWV---DVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVF 442

Query: 561 GLMEAQGFA 569
            +M  +G A
Sbjct: 443 DIMVNKGCA 451



 Score = 46.6 bits (109), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 63/144 (43%)

Query: 408 GQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGP 467
           G   + D A + F+ M+ +   P       ++AA  +    D  +++  ++E  G     
Sbjct: 80  GSFSNFDDALAYFNQMVHMNPFPCITQFNQLLAALVRMKHYDSVVSIYRKMEFFGVSCSV 139

Query: 468 ATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGF 527
            T T+L++ L  L L+     +LGKI +LG  P      +L +     G   +A++ L +
Sbjct: 140 YTLTILINCLCHLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLCIEGRIVEAMEQLDY 199

Query: 528 LEAKKEQMGPDDFERIINGLLAGG 551
           + ++  Q        I+NGL   G
Sbjct: 200 IMSRGYQPTVYTHTMIVNGLCKIG 223


>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/317 (22%), Positives = 142/317 (44%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F+ +V  Y+ LID   KE  +E A ++L +M +NG+ P++V+ + +++    +GN++ A 
Sbjct: 240 FKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAF 299

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
             F  +   G   +   +  +I      G+    + L  +MI  G E +   Y  L+   
Sbjct: 300 ALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGL 359

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
              G +  A Q+ + M+     P + + ++L++ + ++GD   A   ++ MI  G +P+ 
Sbjct: 360 CSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNV 419

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
                M+    K ++ D+A +L+ ++  +G  P   T+   +  L     +  A +LL +
Sbjct: 420 VTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLER 479

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
           +   G  P       L D   R    ++A      +EA+  Q     +  ++ G    G 
Sbjct: 480 MQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGM 539

Query: 553 LQDAQRVHGLMEAQGFA 569
           + +A ++ G    +G A
Sbjct: 540 MGEALQLFGKALVRGTA 556



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 81/399 (20%), Positives = 159/399 (39%), Gaps = 58/399 (14%)

Query: 217 LLQPSRIDWINLLDRL-------------REQNTQLYFKVAELVLSEESFQTNVRDYSKL 263
           +LQ  ++D IN  + L              EQ  ++++++ E        +  VR Y+ L
Sbjct: 96  ILQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMFYRIGEF-----GCKPTVRIYNHL 150

Query: 264 IDAHAKEN-------------------------------CLED----AERILKKMNENGI 288
           +DA   EN                               C  D    A ++  +M+  G 
Sbjct: 151 LDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGC 210

Query: 289 VPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMS 348
            PD VT T +V    KAG +D A+E      +  F+P   VYN++I      G+ ++ + 
Sbjct: 211 PPDAVTYTTMVSSLCKAGKIDDAREL-----AGRFKPSVPVYNALIDGMCKEGRIEVAIK 265

Query: 349 LVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYG 408
           L+  M+ +G++ +   Y  ++ S    G+V  A  +   M +      + + T L++   
Sbjct: 266 LLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCF 325

Query: 409 QAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPA 468
             G   +A   +  MI+ G +P+     ++I        L++AL +  ++++ G  P   
Sbjct: 326 MRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVT 385

Query: 469 TYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFL 528
           TY++L+D   +   +  A +   ++   G  P       + D+  +  +  +A   +  +
Sbjct: 386 TYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKM 445

Query: 529 EAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
             +        F   I GL   G ++ A ++   M+  G
Sbjct: 446 TLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHG 484



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 64/287 (22%), Positives = 117/287 (40%), Gaps = 35/287 (12%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++ ++  + NV  Y+ LI        LE+A ++  +M  +G +P++ T ++L+  ++K+G
Sbjct: 339 LMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSG 398

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           +L  A E +  + SHG +P+   Y  M+             SLV+ M   G   +   + 
Sbjct: 399 DLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFN 458

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
             ++    CG+    G++   M+            LL    G    P+    N       
Sbjct: 459 TFIKGL--CGN----GRVEWAMK------------LLERMQGHGCLPNITTYN------- 493

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
                      ++ A  + N  ++A  L  E+E    +P   TY  ++    R  ++ EA
Sbjct: 494 ----------ELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEA 543

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE 533
            QL GK    G AP      ++   Y + G  K A Q +  + + KE
Sbjct: 544 LQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKE 590



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 72/354 (20%), Positives = 151/354 (42%), Gaps = 11/354 (3%)

Query: 215 KELLQPSRIDWINLLDRLR-EQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCL 273
           ++LLQ S     ++L RL+ ++N          + +  +FQ     Y  +I+   +E  +
Sbjct: 36  QQLLQES-----DVLKRLKTDRNLSSVLGFFSAIANSNAFQHTASTYRVMIERLGRECEM 90

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           +  + IL++M  +GI         +++ Y + G+ ++A + F  +   G +P  ++YN +
Sbjct: 91  DMVQYILQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHL 150

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           + A ++  + ++   L   M   G+  +   Y  LL++  +   V  A ++   M  +  
Sbjct: 151 LDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGC 210

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
            P   + T +V +  +AG  D AR      +    KP      ++I    K+  ++ A+ 
Sbjct: 211 PPDAVTYTTMVSSLCKAGKIDDARE-----LAGRFKPSVPVYNALIDGMCKEGRIEVAIK 265

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
           LL E+  +G +P   +Y+ +++ L     +  A  L  ++   G          L     
Sbjct: 266 LLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCF 325

Query: 514 RAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
             G   +AL     +     +     +  +I+GL + G L++A +V   M+  G
Sbjct: 326 MRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSG 379



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 78/179 (43%), Gaps = 21/179 (11%)

Query: 215 KELLQPSRIDW-INLLDRLREQ----NTQLYFKVAELVL----SEESF-----------Q 254
           K L    R++W + LL+R++      N   Y ++ + +      EE+F           Q
Sbjct: 462 KGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQ 521

Query: 255 TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA 314
            N+  Y+ ++   ++   + +A ++  K    G  PD +T   ++H Y K G +  A + 
Sbjct: 522 PNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQL 581

Query: 315 FESLRSHG-FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
            E + S   + PD   Y S+I    N    +  M+ +D  I  GI  +   + AL+R F
Sbjct: 582 VERVSSMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALVRCF 640


>gi|125559559|gb|EAZ05095.1| hypothetical protein OsI_27286 [Oryza sativa Indica Group]
          Length = 551

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 141/342 (41%), Gaps = 43/342 (12%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +     + N   Y+ L+DA+ +E   +    +LK M   GI P + T T+LV   S A +
Sbjct: 169 MPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVMENEGIEPTVGTYTILVDGLSAARD 228

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           + + +  FE ++S     D   Y+S+I AY  AG  +    + D  + +GIE +E  Y A
Sbjct: 229 ITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGA 288

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+  F + G +  A  +   M++                                    G
Sbjct: 289 LINGFCKIGQMEAAEMLVTDMQVR-----------------------------------G 313

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
              +     +MI  Y +KN++DKAL + + +EK G E    TY  L   L R   ++EA+
Sbjct: 314 VGINQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAK 373

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAG--IEKKALQALGFLEAKKEQMGPD--DFERI 543
            LL  + E G  P      +L  ++   G  +E + L    F E       P    +  +
Sbjct: 374 NLLRIMIEKGVRPNHVSYTTLISIHCNEGDMVEARRL----FREMAGNGAEPSLVTYNVM 429

Query: 544 INGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFN 585
           ++G +  G +++A+R    ME +G         AL+     N
Sbjct: 430 MDGYIKKGSIREAERFKKEMEKKGLVPDIYSYAALVHGHCVN 471



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 79/352 (22%), Positives = 161/352 (45%), Gaps = 6/352 (1%)

Query: 242 KVAEL--VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLV 299
           +VAE+  V+  E  +  V  Y+ L+D  +    +   E + ++M    +  D+   + ++
Sbjct: 196 RVAEMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVI 255

Query: 300 HMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
           + Y +AGN+ RA E F+    +G +P++  Y ++I  +   GQ +    LV  M   G+ 
Sbjct: 256 NAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVG 315

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
            ++ ++  ++  + +   V  A +I  IM     +  + +   L     +A   D+A++ 
Sbjct: 316 INQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNL 375

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
              MI  G +P+     ++I+ +  +  + +A  L  E+  +G EP   TY V++D   +
Sbjct: 376 LRIMIEKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIK 435

Query: 480 LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD- 538
              I EAE+   ++ + G  P      +L   +   G    AL+   F E K+    P+ 
Sbjct: 436 KGSIREAERFKKEMEKKGLVPDIYSYAALVHGHCVNGKVDVALRL--FEEMKQRGSKPNL 493

Query: 539 -DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQ 589
             +  +I+GL   G  ++A +++  M   G    + L  AL+ S   ++++ 
Sbjct: 494 VAYTALISGLAKEGRSEEAFQLYDNMLGDGLTPDDALYSALVGSLHTDKKQN 545



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 86/176 (48%), Gaps = 4/176 (2%)

Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
           S +++V+ Y ++G    AR   D M R G K +  C  S++ AY ++   D+   +L  +
Sbjct: 145 SASVVVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVM 204

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
           E +G EP   TYT+LVD L   + I + E +  ++     +       S+ + Y RAG  
Sbjct: 205 ENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNV 264

Query: 519 KKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572
           ++A +   F E     + P++  +  +ING    G ++ A+ +   M+ +G   ++
Sbjct: 265 RRASEV--FDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQ 318


>gi|302829725|ref|XP_002946429.1| hypothetical protein VOLCADRAFT_103021 [Volvox carteri f.
           nagariensis]
 gi|300268175|gb|EFJ52356.1| hypothetical protein VOLCADRAFT_103021 [Volvox carteri f.
           nagariensis]
          Length = 961

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 131/272 (48%), Gaps = 3/272 (1%)

Query: 255 TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA 314
            NV  YS L++   K N L+ A+ + K+M E G  P++VT  +L+ +Y K    + A + 
Sbjct: 309 CNVHTYSALMNVCIKANELDLAQDVYKQMLEEGCSPNLVTYNILIDVYVKRCQWEEAVKV 368

Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
            ++L     Q + + YN++I A   +GQP+  + + + M+ +G++ S   Y AL+ ++ +
Sbjct: 369 LDTLEKQAIQAEVRTYNTVISACNKSGQPEQALKVYEKMLAAGVKPSATTYTALISAYGK 428

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
            G V  A +I   M     +  + + + L+ A  +AG  + A   F  M +   KP+   
Sbjct: 429 KGQVEKALEIFRDMIRRGCERNVITYSSLISACEKAGRWEMALELFSKMHKENCKPNVVT 488

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
             S+IAA       +KA  L  +++  G +P   TY  L+    R      A +   ++ 
Sbjct: 489 FNSLIAACSHGGHWEKASELFEQMQTQGCKPDSITYCGLITAYERGGQWRRALKAFEQMQ 548

Query: 495 ELGEAPPFKIQVSLCDMYARAGI---EKKALQ 523
             G  P   +  SL ++  ++G+   + KALQ
Sbjct: 549 TQGCHPDAAVFNSLMEVLWQSGVLLAQSKALQ 580



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/295 (22%), Positives = 126/295 (42%), Gaps = 4/295 (1%)

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           D  R L+  +E   + D+ T T ++        L RA E    +RS G   +   Y++++
Sbjct: 259 DWLRNLEPSHELSSLCDLYTYTTMISQCGSHQQLRRALELVAEMRSRGIDCNVHTYSALM 318

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
              + A +  L   +   M+  G   +   Y  L+  + +      A ++ + +  +  Q
Sbjct: 319 NVCIKANELDLAQDVYKQMLEEGCSPNLVTYNILIDVYVKRCQWEEAVKVLDTLEKQAIQ 378

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
             + +   ++ A  ++G P+QA   ++ M+  G KP      ++I+AYGKK  ++KAL +
Sbjct: 379 AEVRTYNTVISACNKSGQPEQALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALEI 438

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
             ++ + G E    TY+ L+    +      A +L  K+ +    P      SL    + 
Sbjct: 439 FRDMIRRGCERNVITYSSLISACEKAGRWEMALELFSKMHKENCKPNVVTFNSLIAACSH 498

Query: 515 AGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQDAQRVHGLMEAQG 567
            G  +KA +   F + + +   PD   +  +I     GG  + A +    M+ QG
Sbjct: 499 GGHWEKASEL--FEQMQTQGCKPDSITYCGLITAYERGGQWRRALKAFEQMQTQG 551


>gi|297839351|ref|XP_002887557.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333398|gb|EFH63816.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 845

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 124/273 (45%), Gaps = 2/273 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + ++  + N   Y++LI ++ + N L +A  + K+M E G  PD VT   L+ +++KAG 
Sbjct: 375 MVKDGCKPNTVTYNRLIHSYGRANYLNEAMNVFKQMQEAGCEPDRVTYCTLIDIHAKAGF 434

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           LD A + ++ +++ G  PD   Y+ +I     AG       L   M+  G   +   +  
Sbjct: 435 LDIAMDMYQRMQAAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNI 494

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++   A+  +   A ++   M+   FQP   + ++++E  G  G  ++A   F  M R  
Sbjct: 495 MIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKN 554

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD+     ++  +GK   ++KA     E+   G  P   T   L+    R+  ++EA 
Sbjct: 555 WVPDEPVYGLLVDLWGKAGNVEKAWQWYQEMLHAGLRPNVPTCNSLLSTFLRVHRMSEAY 614

Query: 488 QLLGKISELGEAPPFKIQVSL--CDMYARAGIE 518
            LL  +  LG  P  +    L  C   AR+  +
Sbjct: 615 NLLQSMLALGLHPSLQTYTLLLSCCTDARSNFD 647



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/274 (21%), Positives = 113/274 (41%), Gaps = 35/274 (12%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           +  F+ +   Y+ ++    +        R+L +M ++G  P+ VT   L+H Y +A  L+
Sbjct: 342 QPGFKHDGHTYTTMVGNLGRAKQFGAINRLLDEMVKDGCKPNTVTYNRLIHSYGRANYLN 401

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A   F+ ++  G +PD+  Y ++I  +  AG   + M +   M  +G+      Y  ++
Sbjct: 402 EAMNVFKQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAAGLSPDTFTYSVII 461

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               + G +  A +                  L  E  GQ   P+    N          
Sbjct: 462 NCLGKAGHLPAAHR------------------LFCEMVGQGCTPNLVTFNI--------- 494

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
                   MIA + K    + AL L  +++  GF+P   TY+++++ LG    + EAE +
Sbjct: 495 --------MIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGV 546

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
             ++      P   +   L D++ +AG  +KA Q
Sbjct: 547 FAEMQRKNWVPDEPVYGLLVDLWGKAGNVEKAWQ 580



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 59/272 (21%), Positives = 120/272 (44%), Gaps = 18/272 (6%)

Query: 316 ESLRSHGFQPDKKVYNSMIMA---YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           E+L + GF+ D    N ++     Y NA    LG     +    G +     Y  ++ + 
Sbjct: 305 EALHNFGFRMDAYQANQVLKQMDNYANA----LGF-FYWLKRQPGFKHDGHTYTTMVGNL 359

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            +        ++ + M  +  +P   +   L+ +YG+A   ++A + F  M   G +PD 
Sbjct: 360 GRAKQFGAINRLLDEMVKDGCKPNTVTYNRLIHSYGRANYLNEAMNVFKQMQEAGCEPDR 419

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               ++I  + K   LD A+++   ++  G  P   TY+V+++ LG+   +  A +L  +
Sbjct: 420 VTYCTLIDIHAKAGFLDIAMDMYQRMQAAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCE 479

Query: 493 ISELGEAP---PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGL 547
           +   G  P    F I ++L   +A+A   + AL+   + + +     PD   +  ++  L
Sbjct: 480 MVGQGCTPNLVTFNIMIAL---HAKARNYETALKL--YRDMQNAGFQPDKVTYSIVMEVL 534

Query: 548 LAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
              GFL++A+ V   M+ + +   E +   L+
Sbjct: 535 GHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLV 566


>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Vitis vinifera]
          Length = 772

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 135/302 (44%), Gaps = 6/302 (1%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F  N   Y+ LI    KEN +E+A  + + +   GI+PD+ T   L+       N   A 
Sbjct: 382 FSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAM 441

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           E FE +++ G  PD+  YN +I +  + G+ +  +SL+  M +SG  R+   Y  L+  F
Sbjct: 442 ELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGF 501

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            +   +  A +I + M ++     + +   L++   +    ++A    D M+  G KPD 
Sbjct: 502 CKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDK 561

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               S++  + +   + KA +++  +  +G EP   TY  L+  L +   +  A +LL  
Sbjct: 562 FTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASRLLRT 621

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD---FERIINGLLA 549
           +   G     +    +     R   EK+  +A+       E+  P D   ++ +  GL +
Sbjct: 622 VQLKGMVLAPQTYNPVIKALFR---EKRTSEAVRLFREMMEKGDPPDAVTYKVVFRGLCS 678

Query: 550 GG 551
           GG
Sbjct: 679 GG 680



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 77/329 (23%), Positives = 142/329 (43%), Gaps = 6/329 (1%)

Query: 243 VAELVLSEESF--QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
           VA + + EE F  + +   Y+ L++     N L+  E +  +M   GI PD+ T  +L+ 
Sbjct: 160 VAVVDIMEEEFGLKLDAFTYNFLLNVLVDGNKLKLVEIVNSRMVSRGIKPDVTTFNILIK 219

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
              +A  +  A    E + S+G  PD+K + +++  ++  G     + + + M+ +G   
Sbjct: 220 ALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPS 279

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
           S      L+  + + G +       + M  E F+P   +   LV    + G    A    
Sbjct: 280 SNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEIL 339

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
           D M++ G  PD     S+I    K   +++A+ +L ++    F P   TY  L+  L + 
Sbjct: 340 DVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKE 399

Query: 481 QLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF 540
             + EA +L   ++  G  P      SL          + A++   F E K +   PD+F
Sbjct: 400 NQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMEL--FEEMKTKGCHPDEF 457

Query: 541 --ERIINGLLAGGFLQDAQRVHGLMEAQG 567
               +I+ L + G L++A  +   ME+ G
Sbjct: 458 TYNMLIDSLCSRGRLEEALSLLKEMESSG 486



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/311 (22%), Positives = 134/311 (43%)

Query: 258 RDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFES 317
           + ++ L+    +E  +  A RI ++M   G     VT  VLVH Y K G ++      + 
Sbjct: 247 KTFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDE 306

Query: 318 LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
           + + GF+PD+  +NS++      G  K  + ++D+M+  G +     Y +L+    + G+
Sbjct: 307 MSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGE 366

Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
           V  A +I N M + +F P   +   L+    +    ++A      +   G  PD     S
Sbjct: 367 VEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNS 426

Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           +I      N    A+ L  E++  G  P   TY +L+D L     + EA  LL ++   G
Sbjct: 427 LIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSG 486

Query: 498 EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQ 557
            +       +L D + +    ++A +    +E +        +  +I+GL     +++A 
Sbjct: 487 CSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAA 546

Query: 558 RVHGLMEAQGF 568
           ++   M  +G 
Sbjct: 547 QLMDQMLMEGL 557



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 76/360 (21%), Positives = 150/360 (41%)

Query: 228 LLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENG 287
           LL+ L + N     ++    +     + +V  ++ LI A  + + +  A  ++++M   G
Sbjct: 182 LLNVLVDGNKLKLVEIVNSRMVSRGIKPDVTTFNILIKALCRAHQIRPAILMMEEMGSYG 241

Query: 288 IVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGM 347
           + PD  T T L+  + + GN++ A    E + + G        N ++  Y   G+ +  +
Sbjct: 242 LSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVL 301

Query: 348 SLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAY 407
           S +D M   G       + +L+    + G V+ A +I ++M  E F P + +   L+   
Sbjct: 302 SFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGL 361

Query: 408 GQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGP 467
            + G+ ++A    + MI     P+     ++I+   K+N +++A  L   L   G  P  
Sbjct: 362 CKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDV 421

Query: 468 ATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGF 527
            T+  L+  L        A +L  ++   G  P       L D     G  ++AL  L  
Sbjct: 422 CTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKE 481

Query: 528 LEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQ 587
           +E+         +  +I+G      +++A+ +   ME QG + +      LI     NR+
Sbjct: 482 MESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRR 541



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 117/283 (41%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
             P+ + +  L+  L ++N          VL+ +    +V  ++ LI      N    A 
Sbjct: 382 FSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAM 441

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
            + ++M   G  PD  T  +L+      G L+ A    + + S G   +   YN++I  +
Sbjct: 442 ELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGF 501

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
               + +    + D M   GI R+   Y  L+    +   V  A Q+ + M +E  +P  
Sbjct: 502 CKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDK 561

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
            +   L+  + +AGD  +A      M   G +PD     ++I    K   ++ A  LL  
Sbjct: 562 FTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASRLLRT 621

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
           ++  G    P TY  ++  L R +  +EA +L  ++ E G+ P
Sbjct: 622 VQLKGMVLAPQTYNPVIKALFREKRTSEAVRLFREMMEKGDPP 664



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/270 (21%), Positives = 111/270 (41%), Gaps = 36/270 (13%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK------- 312
           Y +++    K+       R+L++M   G      T  +L+  Y+K    D A        
Sbjct: 108 YEEVLRKLGKDGSFGSMRRVLQEMKHTGCEIRRGTFLILIESYAKFELFDEAVAVVDIME 167

Query: 313 -------EAF----------------------ESLRSHGFQPDKKVYNSMIMAYVNAGQP 343
                  +AF                        + S G +PD   +N +I A   A Q 
Sbjct: 168 EEFGLKLDAFTYNFLLNVLVDGNKLKLVEIVNSRMVSRGIKPDVTTFNILIKALCRAHQI 227

Query: 344 KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403
           +  + +++ M + G+   E+ +  L++ F + G++ GA +I   M       +  +  +L
Sbjct: 228 RPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVL 287

Query: 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGF 463
           V  Y + G  ++  S  D M   G +PD     S++    +   +  AL +L  + ++GF
Sbjct: 288 VHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGF 347

Query: 464 EPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
           +P   TY  L+  L +L  + EA ++L ++
Sbjct: 348 DPDIFTYNSLIFGLCKLGEVEEAVEILNQM 377


>gi|357449261|ref|XP_003594907.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483955|gb|AES65158.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1385

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/368 (20%), Positives = 166/368 (45%), Gaps = 2/368 (0%)

Query: 215  KELLQPSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCL 273
            K LL P+   + +L+D  L+E +++    + E +L+E   Q +   ++ L+D ++++  +
Sbjct: 647  KGLLSPNPAMYTSLVDGLLKEGHSKAALYMFEDMLNE-GVQPDAIAFNVLLDRYSRKGKM 705

Query: 274  EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
                 IL  M    +  ++ T  +L+H YSK   + R  + +  +  HGF PD+  ++S+
Sbjct: 706  SKVNDILSTMRSRSLCFNLATYNILLHGYSKRHGMARCSKLYNEMIIHGFAPDRLTWHSL 765

Query: 334  IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
            I+ Y  +G   + +  +  +   G +        L+    +  +++ A  +   + +   
Sbjct: 766  ILGYCKSGSLDVAVKFLRKITVEGFKVDCFTLNVLVSKLCERNEIKMAFDLVKQLNMLGV 825

Query: 394  QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
             P +++   L   + +    D+AR     ++  G+ P  +   ++I    +   +  A+ 
Sbjct: 826  TPNVDTYNSLFNGFVRTCSFDEARCILHALLENGYAPTCKQFTTLIRGMCRMGNVKGAME 885

Query: 454  LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
            L  E++  G        + ++  L R +  +EA ++LG + E+   P      +L   Y 
Sbjct: 886  LQDEMKILGVSSQGVAMSAIIRGLARSRKTDEATRILGIMLEMQIIPTVATFTTLMHTYC 945

Query: 514  RAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASER 573
            + G   KAL+    +E    ++    +  +I+GL A G +Q A +++  ME +    +  
Sbjct: 946  KEGNVAKALELRSVMEQCHVKLDVAAYNVLISGLCADGDIQAAFKLYEEMEQRDIWPNTS 1005

Query: 574  LKVALISS 581
            + + LI S
Sbjct: 1006 IYIVLIDS 1013



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/327 (22%), Positives = 141/327 (43%), Gaps = 23/327 (7%)

Query: 220 PSRIDWINLLDRLREQNTQLYFKVAELV--LSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           P+ + +  LL+   ++    Y   +EL+  ++ +    +V  Y+ LID   +++      
Sbjct: 212 PTAVTYNTLLNWYCKKGR--YKAASELIDAMASKGIAADVCTYNVLIDDLCRKSRSAKGY 269

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
            IL++M +N + P+ +T   L++   K G +  A + FE +      P+   YN++I  +
Sbjct: 270 LILRRMRKNMVYPNEITYNTLINGLVKEGKIGVATKVFEEMSLCNLLPNSVTYNTLIFGH 329

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
            + G  +  + L D+M++ G+  +E  Y ALL   ++         +   MR++  +   
Sbjct: 330 CSNGNIEEALRLCDVMVSHGLRPNEVTYGALLNGISKHAQFGLVSSVLERMRMDGVRVGH 389

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD------------------DRCT-ASM 438
            S T +++   + G  ++A    D M+++   PD                  +R   +++
Sbjct: 390 ISYTTMIDGLCKNGLLEEAVQLLDDMLKVSVSPDIVTFSVLVNGFLKTGLVPNRVLHSTL 449

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           I  Y K   L +ALN    + + G      T +VLV    R   + EAE  +  +S +G 
Sbjct: 450 IYNYCKMGNLKEALNAYAVMNQSGHVSDHFTSSVLVASFCRCGRLEEAEYFVDHMSRMGL 509

Query: 499 APPFKIQVSLCDMYARAGIEKKALQAL 525
           AP       + D Y  +G   KA    
Sbjct: 510 APSSVTFDCIIDTYGNSGDALKAFSVF 536



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 115/262 (43%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  ++ L++A  +    + A  +L+KM+E G  P  VT   L++ Y K G    A E  
Sbjct: 178 NVATFNILLNALCERGKFKSAGVLLRKMDETGHFPTAVTYNTLLNWYCKKGRYKAASELI 237

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           +++ S G   D   YN +I       +   G  ++  M  + +  +E  Y  L+    + 
Sbjct: 238 DAMASKGIAADVCTYNVLIDDLCRKSRSAKGYLILRRMRKNMVYPNEITYNTLINGLVKE 297

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A ++   M +    P   +   L+  +   G+ ++A    D M+  G +P++   
Sbjct: 298 GKIGVATKVFEEMSLCNLLPNSVTYNTLIFGHCSNGNIEEALRLCDVMVSHGLRPNEVTY 357

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            +++    K        ++L  +  DG   G  +YT ++D L +  L+ EA QLL  + +
Sbjct: 358 GALLNGISKHAQFGLVSSVLERMRMDGVRVGHISYTTMIDGLCKNGLLEEAVQLLDDMLK 417

Query: 496 LGEAPPFKIQVSLCDMYARAGI 517
           +  +P       L + + + G+
Sbjct: 418 VSVSPDIVTFSVLVNGFLKTGL 439



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/339 (19%), Positives = 135/339 (39%), Gaps = 39/339 (11%)

Query: 215  KELLQPSRIDWINLLDRLREQNTQLYFKVAELV--LSEESFQTNVRDYSKLIDAHAKENC 272
             E +QP  I +  LLDR   +      KV +++  +   S   N+  Y+ L+  ++K + 
Sbjct: 682  NEGVQPDAIAFNVLLDRYSRKGKM--SKVNDILSTMRSRSLCFNLATYNILLHGYSKRHG 739

Query: 273  LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQ-------- 324
            +    ++  +M  +G  PD +T   L+  Y K+G+LD A +    +   GF+        
Sbjct: 740  MARCSKLYNEMIIHGFAPDRLTWHSLILGYCKSGSLDVAVKFLRKITVEGFKVDCFTLNV 799

Query: 325  ---------------------------PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG 357
                                       P+   YNS+   +V          ++  ++ +G
Sbjct: 800  LVSKLCERNEIKMAFDLVKQLNMLGVTPNVDTYNSLFNGFVRTCSFDEARCILHALLENG 859

Query: 358  IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
               + + +  L+R   + G+V+GA ++ + M+I        + + ++    ++   D+A 
Sbjct: 860  YAPTCKQFTTLIRGMCRMGNVKGAMELQDEMKILGVSSQGVAMSAIIRGLARSRKTDEAT 919

Query: 418  SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
                 M+ +   P      +++  Y K+  + KAL L   +E+   +   A Y VL+  L
Sbjct: 920  RILGIMLEMQIIPTVATFTTLMHTYCKEGNVAKALELRSVMEQCHVKLDVAAYNVLISGL 979

Query: 478  GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
                 I  A +L  ++ +    P   I + L D +   G
Sbjct: 980  CADGDIQAAFKLYEEMEQRDIWPNTSIYIVLIDSFLCTG 1018



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 82/393 (20%), Positives = 136/393 (34%), Gaps = 78/393 (19%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVT----------------STVLVH--- 300
           +  +ID +        A  +  KMN  G +P   T                + + +H   
Sbjct: 516 FDCIIDTYGNSGDALKAFSVFDKMNSLGHLPSQFTYEGLLKGLLIGGHINEAKIFMHRPS 575

Query: 301 ----------------MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ-- 342
                           + S++GNL  A    + +  + F PD   Y S+I      G+  
Sbjct: 576 SIPYAIGSTFYNTMLTLTSRSGNLSNAVALLDEMVMNNFVPDSFTYTSLIAGLCRKGKMV 635

Query: 343 ------------------PKLGMSLVDM----------------MITSGIERSEEIYLAL 368
                             P +  SLVD                 M+  G++     +  L
Sbjct: 636 PALLLSGRAIEKGLLSPNPAMYTSLVDGLLKEGHSKAALYMFEDMLNEGVQPDAIAFNVL 695

Query: 369 LRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH 428
           L  +++ G +     I + MR       L +  +L+  Y +     +    ++ MI  G 
Sbjct: 696 LDRYSRKGKMSKVNDILSTMRSRSLCFNLATYNILLHGYSKRHGMARCSKLYNEMIIHGF 755

Query: 429 KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQ 488
            PD     S+I  Y K   LD A+  L ++  +GF+    T  VLV  L     I  A  
Sbjct: 756 APDRLTWHSLILGYCKSGSLDVAVKFLRKITVEGFKVDCFTLNVLVSKLCERNEIKMAFD 815

Query: 489 LLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLL 548
           L+ +++ LG  P      SL + + R     +A   L  L           F  +I G+ 
Sbjct: 816 LVKQLNMLGVTPNVDTYNSLFNGFVRTCSFDEARCILHALLENGYAPTCKQFTTLIRGMC 875

Query: 549 AGGF------LQDAQRVHGLMEAQGFAASERLK 575
             G       LQD  ++ G+  +QG A S  ++
Sbjct: 876 RMGNVKGAMELQDEMKILGV-SSQGVAMSAIIR 907



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 53/117 (45%)

Query: 261  SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320
            S +I   A+    ++A RIL  M E  I+P + T T L+H Y K GN+ +A E    +  
Sbjct: 903  SAIIRGLARSRKTDEATRILGIMLEMQIIPTVATFTTLMHTYCKEGNVAKALELRSVMEQ 962

Query: 321  HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
               + D   YN +I      G  +    L + M    I  +  IY+ L+ SF   G+
Sbjct: 963  CHVKLDVAAYNVLISGLCADGDIQAAFKLYEEMEQRDIWPNTSIYIVLIDSFLCTGN 1019



 Score = 40.4 bits (93), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 77/178 (43%), Gaps = 10/178 (5%)

Query: 387 IMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKN 446
           +M    F P++ +C +++ +  +  + D   S F  MI     P+      ++ A  ++ 
Sbjct: 134 LMGFRGFSPSVFTCNMVLGSLVKDREVDLFWSFFKEMIANRVSPNVATFNILLNALCERG 193

Query: 447 LLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQV 506
               A  LL ++++ G  P   TY  L++W  +      A +L+  ++  G A       
Sbjct: 194 KFKSAGVLLRKMDETGHFPTAVTYNTLLNWYCKKGRYKAASELIDAMASKGIAADVCTYN 253

Query: 507 SLCDMYARAGIEKKALQALGFL---EAKKEQMGPDD--FERIINGLLAGGFLQDAQRV 559
            L D   R     K+  A G+L     +K  + P++  +  +INGL+  G +  A +V
Sbjct: 254 VLIDDLCR-----KSRSAKGYLILRRMRKNMVYPNEITYNTLINGLVKEGKIGVATKV 306


>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/317 (22%), Positives = 142/317 (44%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F+ +V  Y+ LID   KE  +E A ++L +M +NG+ P++V+ + +++    +GN++ A 
Sbjct: 240 FKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAF 299

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
             F  +   G   +   +  +I      G+    + L  +MI  G E +   Y  L+   
Sbjct: 300 ALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGL 359

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
              G +  A Q+ + M+     P + + ++L++ + ++GD   A   ++ MI  G +P+ 
Sbjct: 360 CSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNV 419

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
                M+    K ++ D+A +L+ ++  +G  P   T+   +  L     +  A +LL +
Sbjct: 420 VTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLER 479

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
           +   G  P       L D   R    ++A      +EA+  Q     +  ++ G    G 
Sbjct: 480 MQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGM 539

Query: 553 LQDAQRVHGLMEAQGFA 569
           + +A ++ G    +G A
Sbjct: 540 MGEALQLFGKALVRGTA 556



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 81/399 (20%), Positives = 159/399 (39%), Gaps = 58/399 (14%)

Query: 217 LLQPSRIDWINLLDRL-------------REQNTQLYFKVAELVLSEESFQTNVRDYSKL 263
           +LQ  ++D IN  + L              EQ  ++++++ E        +  VR Y+ L
Sbjct: 96  ILQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMFYRIGEF-----GCKPTVRIYNHL 150

Query: 264 IDAHAKEN-------------------------------CLED----AERILKKMNENGI 288
           +DA   EN                               C  D    A ++  +M+  G 
Sbjct: 151 LDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGC 210

Query: 289 VPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMS 348
            PD VT T +V    KAG +D A+E      +  F+P   VYN++I      G+ ++ + 
Sbjct: 211 PPDAVTYTTMVSSLCKAGKIDDAREL-----AGRFKPSVPVYNALIDGMCKEGRIEVAIK 265

Query: 349 LVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYG 408
           L+  M+ +G++ +   Y  ++ S    G+V  A  +   M +      + + T L++   
Sbjct: 266 LLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCF 325

Query: 409 QAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPA 468
             G   +A   +  MI+ G +P+     ++I        L++AL +  ++++ G  P   
Sbjct: 326 MRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVT 385

Query: 469 TYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFL 528
           TY++L+D   +   +  A +   ++   G  P       + D+  +  +  +A   +  +
Sbjct: 386 TYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKM 445

Query: 529 EAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
             +        F   I GL   G ++ A ++   M+  G
Sbjct: 446 TLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHG 484



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 64/287 (22%), Positives = 117/287 (40%), Gaps = 35/287 (12%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++ ++  + NV  Y+ LI        LE+A ++  +M  +G +P++ T ++L+  ++K+G
Sbjct: 339 LMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSG 398

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           +L  A E +  + SHG +P+   Y  M+             SLV+ M   G   +   + 
Sbjct: 399 DLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFN 458

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
             ++    CG+    G++   M+            LL    G    P+    N       
Sbjct: 459 TFIKGL--CGN----GRVEWAMK------------LLERMQGHGCLPNITTYN------- 493

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
                      ++ A  + N  ++A  L  E+E    +P   TY  ++    R  ++ EA
Sbjct: 494 ----------ELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEA 543

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE 533
            QL GK    G AP      ++   Y + G  K A Q +  + + KE
Sbjct: 544 LQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKE 590



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 78/384 (20%), Positives = 161/384 (41%), Gaps = 22/384 (5%)

Query: 215 KELLQPSRIDWINLLDRLR-EQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCL 273
           ++LLQ S     ++L RL+ ++N          + +  +FQ     Y  +I+   +E  +
Sbjct: 36  QQLLQES-----DVLKRLKTDRNLSSVLGFFSAIANSNAFQHTASTYRVMIERLGRECEM 90

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           +  + IL++M  +GI         +++ Y + G+ ++A + F  +   G +P  ++YN +
Sbjct: 91  DMVQYILQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHL 150

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           + A ++  + ++   L   M   G+  +   Y  LL++  +   V  A ++   M  +  
Sbjct: 151 LDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGC 210

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
            P   + T +V +  +AG  D AR      +    KP      ++I    K+  ++ A+ 
Sbjct: 211 PPDAVTYTTMVSSLCKAGKIDDARE-----LAGRFKPSVPVYNALIDGMCKEGRIEVAIK 265

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
           LL E+  +G +P   +Y+ +++ L     +  A  L  ++   G          L     
Sbjct: 266 LLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCF 325

Query: 514 RAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASER 573
             G   +AL     +     +     +  +I+GL + G L++A +V   M+  G   +  
Sbjct: 326 MRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVT 385

Query: 574 LKVALI-----------SSQTFNR 586
               LI           +S+T+NR
Sbjct: 386 TYSILIDGFAKSGDLVGASETWNR 409



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 78/179 (43%), Gaps = 21/179 (11%)

Query: 215 KELLQPSRIDW-INLLDRLREQ----NTQLYFKVAELVL----SEESF-----------Q 254
           K L    R++W + LL+R++      N   Y ++ + +      EE+F           Q
Sbjct: 462 KGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQ 521

Query: 255 TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA 314
            N+  Y+ ++   ++   + +A ++  K    G  PD +T   ++H Y K G +  A + 
Sbjct: 522 PNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQL 581

Query: 315 FESLRSHG-FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
            E + S   + PD   Y S+I    N    +  M+ +D  I  GI  +   + AL+R F
Sbjct: 582 VERVSSMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALVRCF 640


>gi|15221377|ref|NP_177613.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207514|sp|Q9SSF9.1|PP123_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74750
 gi|5882748|gb|AAD55301.1|AC008263_32 Contains 2 PF|01535 DUF domains [Arabidopsis thaliana]
 gi|332197508|gb|AEE35629.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 855

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 106/215 (49%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  LID HAK   L+ A  + ++M E G+ PD  T +V+++   KAG+L  A   F  + 
Sbjct: 432 YCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMV 491

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P+   +N MI  +  A   +  + L   M  +G +  +  Y  ++     CG + 
Sbjct: 492 GQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLE 551

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  +   M+ + + P      LLV+ +G+AG+ D+A   +  M++ G +P+     S++
Sbjct: 552 EAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAWQWYQAMLQAGLRPNVPTCNSLL 611

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
           + + + + + +A NLL  +   G  P   TYT+L+
Sbjct: 612 STFLRVHRMSEAYNLLQSMLALGLHPSLQTYTLLL 646



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 119/265 (44%), Gaps = 2/265 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N   Y++LI ++ + N L++A  +  +M E G  PD VT   L+ +++KAG LD A + +
Sbjct: 393 NTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMY 452

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + ++  G  PD   Y+ +I     AG       L   M+  G   +   +  ++   A+ 
Sbjct: 453 QRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKA 512

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
            +   A ++   M+   FQP   + ++++E  G  G  ++A   F  M R    PD+   
Sbjct: 513 RNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVY 572

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             ++  +GK   +DKA      + + G  P   T   L+    R+  ++EA  LL  +  
Sbjct: 573 GLLVDLWGKAGNVDKAWQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLA 632

Query: 496 LGEAPPFKIQVSL--CDMYARAGIE 518
           LG  P  +    L  C   AR+  +
Sbjct: 633 LGLHPSLQTYTLLLSCCTDARSNFD 657



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/274 (21%), Positives = 110/274 (40%), Gaps = 35/274 (12%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           +  F+ +   Y+ ++    +     +  ++L +M  +G  P+ VT   L+H Y +A  L 
Sbjct: 352 QPGFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLK 411

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A   F  ++  G +PD+  Y ++I  +  AG   + M +   M  +G+      Y  ++
Sbjct: 412 EAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVII 471

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               + G +  A +                  L  E  GQ   P+    N          
Sbjct: 472 NCLGKAGHLPAAHR------------------LFCEMVGQGCTPNLVTFNI--------- 504

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
                   MIA + K    + AL L  +++  GF+P   TY+++++ LG    + EAE +
Sbjct: 505 --------MIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGV 556

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
             ++      P   +   L D++ +AG   KA Q
Sbjct: 557 FAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAWQ 590



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 59/272 (21%), Positives = 121/272 (44%), Gaps = 18/272 (6%)

Query: 316 ESLRSHGFQPDKKVYNSMIMA---YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           E+L + GF+ D    N ++     Y NA    LG     +    G +     Y  ++ + 
Sbjct: 315 EALHNFGFRMDAYQANQVLKQMDNYANA----LGF-FYWLKRQPGFKHDGHTYTTMVGNL 369

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            +        ++ + M  +  +P   +   L+ +YG+A    +A + F+ M   G +PD 
Sbjct: 370 GRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDR 429

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               ++I  + K   LD A+++   +++ G  P   TY+V+++ LG+   +  A +L  +
Sbjct: 430 VTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCE 489

Query: 493 ISELGEAP---PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGL 547
           +   G  P    F I ++L   +A+A   + AL+   + + +     PD   +  ++  L
Sbjct: 490 MVGQGCTPNLVTFNIMIAL---HAKARNYETALKL--YRDMQNAGFQPDKVTYSIVMEVL 544

Query: 548 LAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
              GFL++A+ V   M+ + +   E +   L+
Sbjct: 545 GHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLV 576



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 65/132 (49%), Gaps = 3/132 (2%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +    FQ +   YS +++       LE+AE +  +M     VPD     +LV ++ KAGN
Sbjct: 525 MQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGN 584

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D+A + ++++   G +P+    NS++  ++   +     +L+  M+  G+  S + Y  
Sbjct: 585 VDKAWQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTYTL 644

Query: 368 LLRSFAQCGDVR 379
           LL   + C D R
Sbjct: 645 LL---SCCTDAR 653


>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 906

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 93/384 (24%), Positives = 174/384 (45%), Gaps = 17/384 (4%)

Query: 193 LITDKILSLEK-EEDPSPLLAEWKELLQPSRIDWINLLDRL-REQNTQLYFKVAELVLSE 250
           ++ D++   +K +E  S  L    ++  P    + +L+D L R       + + E +L  
Sbjct: 452 IMIDRLCKAQKLDEACSIFLGLDHKVCSPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDS 511

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           +    NV  Y+ LI    K    ED  +I K+M   G  PD++     +    KAG +++
Sbjct: 512 DQI-PNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEK 570

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
            +  FE +++ G  PD + Y+ +I   V AG  +    L   M   G+      Y  ++ 
Sbjct: 571 GRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVID 630

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
            F + G V  A Q+   M+ +  QPT+ +   +V+   +    D+A   F+    +G   
Sbjct: 631 GFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDL 690

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           +    +S+I  +GK   +D+A  +L EL + G  P   T+  L+D L + + I+EA+   
Sbjct: 691 NVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCF 750

Query: 491 GKISELGEAP---PFKIQVS-LCDMYARAGIEKKALQALGFL-EAKKEQMGPDD--FERI 543
             +  L  +P    + I ++ LC       + +K  +A  F  E +K+ + P++  +  +
Sbjct: 751 QNMKNLKCSPNAMTYSIMINGLC-------MIRKFNKAFVFWQEMQKQGLKPNNITYTTM 803

Query: 544 INGLLAGGFLQDAQRVHGLMEAQG 567
           I GL   G + +A+ +    +A G
Sbjct: 804 IAGLAKAGNVMEARGLFDRFKASG 827



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 90/367 (24%), Positives = 155/367 (42%), Gaps = 13/367 (3%)

Query: 206 DPSPLLAEWKELLQPSRIDWINLLDRLREQNTQL-YFKVAELVLSEESFQTNVRD-YSKL 263
           D    L  + E+ QP  I  + ++ RL++ N    YF+  E     ++ Q +  + Y+  
Sbjct: 86  DVEEALNVFDEMSQPEVI--VGVMKRLKDVNVAFQYFRWVE----RKTQQAHCPEVYNAF 139

Query: 264 IDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGF 323
           +   A+   L+  E+IL++M+  G       S  LV  + K+  L  A    E +R   F
Sbjct: 140 LMVMARTRNLDYLEQILEEMSVAGFGLSNHVSVELVASFVKSHKLKEAFGVIEMMRKFKF 199

Query: 324 QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQ 383
           +P    Y ++I A   A +P   ++L   M   G E +  ++  L+R FA+ G +  A  
Sbjct: 200 RPAFSAYTTLIGALSAANRPDPMLTLFHQMQEIGYEANVHLFTTLVRVFAREGRIDAALS 259

Query: 384 ITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYG 443
           + + M+   F   L    + ++ +G+ G  D A   F  M   G  PDD    ++I    
Sbjct: 260 LLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGLVPDDVTYTTLIGVLC 319

Query: 444 KKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFK 503
           K   LD+A+ L  EL+ +   P    Y  ++   G     +EA  LL +    G  P   
Sbjct: 320 KARRLDEAVELFEELDLNRSVPCVYAYNTMIMGYGSAGKFDEAYSLLERQKRKGCIPSVI 379

Query: 504 IQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHG 561
               +     R G   K  +AL   +  ++   P+   +  +I+ L   G L+ A +V  
Sbjct: 380 AYNCILTCLGRKG---KVEEALRIHDEMRQDAAPNLTTYNILIDMLCKAGELEAALKVQD 436

Query: 562 LMEAQGF 568
            M+  G 
Sbjct: 437 TMKEAGL 443



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 122/296 (41%), Gaps = 35/296 (11%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  Y+ LID   K   LE A ++   M E G+ P+I+T  +++    KA  LD A   F
Sbjct: 411 NLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLDEACSIF 470

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             L      PD + + S+I      G+     SL + M+ S    +  +Y +L+++F +C
Sbjct: 471 LGLDHKVCSPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYTSLIQNFFKC 530

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G      +I   M      P L      ++   +AG+ ++ R+ F+ +   G  PD R  
Sbjct: 531 GRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSY 590

Query: 436 A-----------------------------------SMIAAYGKKNLLDKALNLLLELEK 460
           +                                   ++I  + K   +DKA  LL E++ 
Sbjct: 591 SILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKT 650

Query: 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
            G +P   TY  +VD L ++  ++EA  L  +   +G      I  SL D + + G
Sbjct: 651 KGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVG 706



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 101/253 (39%), Gaps = 35/253 (13%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E+    +V  Y+ +ID   K   ++ A ++L++M   G+ P +VT   +V   +K   
Sbjct: 613 MKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDR 672

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           LD A   FE  +S G   +  +Y+S+I  +   G                  R +E YL 
Sbjct: 673 LDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVG------------------RIDEAYL- 713

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           +L    Q G                  P   +   L++A  +A + D+A+  F  M  L 
Sbjct: 714 ILEELMQKG----------------LTPNSYTWNCLLDALVKAEEIDEAQVCFQNMKNLK 757

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P+    + MI         +KA     E++K G +P   TYT ++  L +   + EA 
Sbjct: 758 CSPNAMTYSIMINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYTTMIAGLAKAGNVMEAR 817

Query: 488 QLLGKISELGEAP 500
            L  +    G  P
Sbjct: 818 GLFDRFKASGGVP 830


>gi|115482710|ref|NP_001064948.1| Os10g0495100 [Oryza sativa Japonica Group]
 gi|22128714|gb|AAM92826.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
 gi|31432837|gb|AAP54424.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639557|dbj|BAF26862.1| Os10g0495100 [Oryza sativa Japonica Group]
 gi|125575261|gb|EAZ16545.1| hypothetical protein OsJ_32018 [Oryza sativa Japonica Group]
          Length = 461

 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 124/264 (46%), Gaps = 10/264 (3%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +I+   KE   + A     +M + GI+PD+VT + ++    KA  +D+A E   ++ 
Sbjct: 195 YNTVINGFFKEGDPDKAYATYHEMFDQGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMV 254

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
            +G  P+ + YNS++  Y ++GQ    +  + MM + G+E  + +   LL  +  C + R
Sbjct: 255 KNGVMPNCRTYNSIVHGYCSSGQLTEAIGFLKMMCSDGVE-PDVVTCNLLMDYL-CKNRR 312

Query: 380 G--AGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
              A +I N M     +P + +   L++ Y   G   +     D M+  G +P+      
Sbjct: 313 CTEARKIFNSMTKCGLKPDITTYCTLLQGYATKGALVEMHDLLDLMVWNGIQPNHHVFNI 372

Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           +I AY K+  +D+A+ +  ++ + G  P    Y  ++D L +L  + +A   L ++   G
Sbjct: 373 LICAYAKQEKVDEAMLVFSKMRQQGLSPNAVNYRTVIDVLCKLGRVYDAVLTLKQMINEG 432

Query: 498 EAPPFKIQVSL------CDMYARA 515
             P   +   L      CD + +A
Sbjct: 433 LTPDIIVYTPLIHGFCTCDKWEKA 456



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 117/247 (47%), Gaps = 2/247 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENG--IVPDIVTSTVLVHMYSKAGNLDRAKE 313
           NV   + L+     EN  ++A  +L+ M ++G    PD+V    +++ + K G+ D+A  
Sbjct: 154 NVFSCTILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVLYNTVINGFFKEGDPDKAYA 213

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            +  +   G  PD   Y+S+I A   A      M +++ M+ +G+  +   Y +++  + 
Sbjct: 214 TYHEMFDQGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPNCRTYNSIVHGYC 273

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
             G +  A     +M  +  +P + +C LL++   +     +AR  F+ M + G KPD  
Sbjct: 274 SSGQLTEAIGFLKMMCSDGVEPDVVTCNLLMDYLCKNRRCTEARKIFNSMTKCGLKPDIT 333

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
              +++  Y  K  L +  +LL  +  +G +P    + +L+    + + ++EA  +  K+
Sbjct: 334 TYCTLLQGYATKGALVEMHDLLDLMVWNGIQPNHHVFNILICAYAKQEKVDEAMLVFSKM 393

Query: 494 SELGEAP 500
            + G +P
Sbjct: 394 RQQGLSP 400



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 103/235 (43%), Gaps = 8/235 (3%)

Query: 203 KEEDPSPLLAEWKELLQ----PSRIDWINLLDRLREQNTQLYFKVAELV--LSEESFQTN 256
           KE DP    A + E+      P  + + +++  L +   Q   K  E++  + +     N
Sbjct: 204 KEGDPDKAYATYHEMFDQGILPDVVTYSSIIAALCK--AQAMDKAMEVLNTMVKNGVMPN 261

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
            R Y+ ++  +     L +A   LK M  +G+ PD+VT  +L+    K      A++ F 
Sbjct: 262 CRTYNSIVHGYCSSGQLTEAIGFLKMMCSDGVEPDVVTCNLLMDYLCKNRRCTEARKIFN 321

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
           S+   G +PD   Y +++  Y   G       L+D+M+ +GI+ +  ++  L+ ++A+  
Sbjct: 322 SMTKCGLKPDITTYCTLLQGYATKGALVEMHDLLDLMVWNGIQPNHHVFNILICAYAKQE 381

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
            V  A  + + MR +   P   +   +++   + G    A      MI  G  PD
Sbjct: 382 KVDEAMLVFSKMRQQGLSPNAVNYRTVIDVLCKLGRVYDAVLTLKQMINEGLTPD 436



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/267 (20%), Positives = 107/267 (40%), Gaps = 38/267 (14%)

Query: 288 IVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQ--------------PDKKVYNSM 333
           + P++ T +VL+    +AG LD    A  ++   GF+               DK+  ++M
Sbjct: 80  VTPNLYTYSVLIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAM 139

Query: 334 IMAYVNAGQ----PKL------------------GMSLVDMMITSGIERSEEI--YLALL 369
            +      Q    P +                   + L+ MM   G +   ++  Y  ++
Sbjct: 140 DIVLCRMTQLGCIPNVFSCTILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVLYNTVI 199

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
             F + GD   A    + M  +   P + + + ++ A  +A   D+A    + M++ G  
Sbjct: 200 NGFFKEGDPDKAYATYHEMFDQGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVM 259

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           P+ R   S++  Y     L +A+  L  +  DG EP   T  +L+D+L + +   EA ++
Sbjct: 260 PNCRTYNSIVHGYCSSGQLTEAIGFLKMMCSDGVEPDVVTCNLLMDYLCKNRRCTEARKI 319

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAG 516
              +++ G  P      +L   YA  G
Sbjct: 320 FNSMTKCGLKPDITTYCTLLQGYATKG 346


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 136/312 (43%), Gaps = 19/312 (6%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           +S L+D + K   L++A  I  +M +     D+V+ T ++H   + G  +     F  L 
Sbjct: 258 WSALLDLYGKCGSLDEARGIFDQMKDR----DVVSWTTMIHRCFEDGRREEGFLLFRDLM 313

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +P++  +  ++ A  +     LG  +   M+ +G +       AL+  +++CG+ R
Sbjct: 314 QSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPGSFAISALVHMYSKCGNTR 373

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++ N M     QP L S T L+  Y Q G PD+A   F+ +++ G KPD      ++
Sbjct: 374 VARRVFNEMH----QPDLVSWTSLIVGYAQNGQPDEALHFFELLLQSGTKPDQVTYVGVL 429

Query: 440 AAYGKKNLLDKALNLLLEL-EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           +A     L+DK L     + EK G       Y  ++D L R     EAE +   I  +  
Sbjct: 430 SACTHAGLVDKGLEYFHSIKEKHGLMHTADHYACVIDLLARSGRFKEAENI---IDNMPV 486

Query: 499 APPFKIQVSL---CDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
            P   +  SL   C ++    + K+A +AL  +E +     P  +  + N     G   +
Sbjct: 487 KPDKFLWASLLGGCRIHGNLELAKRAAKALYEIEPEN----PATYITLANIYANAGLWSE 542

Query: 556 AQRVHGLMEAQG 567
              V   M+  G
Sbjct: 543 VANVRKDMDNMG 554



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 115/283 (40%), Gaps = 23/283 (8%)

Query: 223 IDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVR----DYSKLIDAHAKENCLEDAER 278
           + W  ++ R  E       +    +L  +  Q+ VR     ++ +++A A        + 
Sbjct: 287 VSWTTMIHRCFEDGR----REEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKE 342

Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338
           +   M   G  P     + LVHMYSK GN   A+  F  +     QPD   + S+I+ Y 
Sbjct: 343 VHGYMMHAGYDPGSFAISALVHMYSKCGNTRVARRVFNEMH----QPDLVSWTSLIVGYA 398

Query: 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV-RGAGQITNIMRIEEFQPTL 397
             GQP   +   ++++ SG +  +  Y+ +L +    G V +G     +I        T 
Sbjct: 399 QNGQPDEALHFFELLLQSGTKPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTA 458

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA---YGKKNLLDKALNL 454
           +    +++   ++G   +A +  D M     KPD    AS++     +G   L  +A   
Sbjct: 459 DHYACVIDLLARSGRFKEAENIIDNMPV---KPDKFLWASLLGGCRIHGNLELAKRAAKA 515

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           L E+E +     PATY  L +      L +E   +   +  +G
Sbjct: 516 LYEIEPE----NPATYITLANIYANAGLWSEVANVRKDMDNMG 554



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 77/376 (20%), Positives = 137/376 (36%), Gaps = 58/376 (15%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           +L     + + R YS LI A  +   LE   R+      +  VP +  S  L+ MY+K G
Sbjct: 77  LLHRTDHRPSARVYSTLIAACVRHRALELGRRVHAHTKASNFVPGVFISNRLLDMYAKCG 136

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           +L  A+  F+ +       D   +N+MI+ Y   G+ +    L D M     +R    + 
Sbjct: 137 SLVDAQMLFDEMG----HRDLCSWNTMIVGYAKLGRLEQARKLFDEM----PQRDNFSWN 188

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQ-----------------PTLE----------- 398
           A +  +      R A ++  +M+  E                   P L            
Sbjct: 189 AAISGYVTHNQPREALELFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGKEIHGYLIR 248

Query: 399 --------SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT-ASMIAAYGKKNLLD 449
                     + L++ YG+ G  D+AR  FD M     K  D  +  +MI    +    +
Sbjct: 249 TELNLDEVVWSALLDLYGKCGSLDEARGIFDQM-----KDRDVVSWTTMIHRCFEDGRRE 303

Query: 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLC 509
           +   L  +L + G  P   T+  +++        +  +++ G +   G  P      +L 
Sbjct: 304 EGFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPGSFAISALV 363

Query: 510 DMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQG 567
            MY++ G  + A +         E   PD   +  +I G    G   +A     L+   G
Sbjct: 364 HMYSKCGNTRVARRVF------NEMHQPDLVSWTSLIVGYAQNGQPDEALHFFELLLQSG 417

Query: 568 FAASERLKVALISSQT 583
               +   V ++S+ T
Sbjct: 418 TKPDQVTYVGVLSACT 433



 Score = 40.0 bits (92), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 65/151 (43%), Gaps = 8/151 (5%)

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
           R KEA E L     +P  +VY+++I A V     +LG  +      S       I   LL
Sbjct: 70  RVKEAVELLHRTDHRPSARVYSTLIAACVRHRALELGRRVHAHTKASNFVPGVFISNRLL 129

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
             +A+CG +  A  + + M   +    L S   ++  Y + G  +QAR  FD M     +
Sbjct: 130 DMYAKCGSLVDAQMLFDEMGHRD----LCSWNTMIVGYAKLGRLEQARKLFDEMP----Q 181

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
            D+    + I+ Y   N   +AL L   +++
Sbjct: 182 RDNFSWNAAISGYVTHNQPREALELFRVMQR 212


>gi|296087909|emb|CBI35192.3| unnamed protein product [Vitis vinifera]
          Length = 1001

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 134/322 (41%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           E FQ NV  Y  LI+   K+  + +A  I  +M   GI P+IVT   L+H   K      
Sbjct: 144 EGFQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKH 203

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
                  +      PD    N+++ A    G       +VDMMI  G+E +   Y AL+ 
Sbjct: 204 VTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMD 263

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
                 +V  A ++ + M  ++    + S   L+  Y +    D+A   F+ M R    P
Sbjct: 264 GHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTP 323

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           +     ++I        L  A++L  E+   G  P   TY  L D+L + + +++A  LL
Sbjct: 324 NTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALL 383

Query: 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAG 550
             I      P  +I  ++ D   RAG  + A      L +K  Q     +  +I+GL   
Sbjct: 384 KAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQ 443

Query: 551 GFLQDAQRVHGLMEAQGFAASE 572
           G L +A ++   M   G + ++
Sbjct: 444 GLLAEASKLFSEMNKNGCSPND 465



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/337 (21%), Positives = 137/337 (40%), Gaps = 22/337 (6%)

Query: 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318
           D++KL+ + AK         +  +M+  GI PD+ T  +L++ +     L  A      L
Sbjct: 583 DFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKL 642

Query: 319 RSHGFQPDK----------------------KVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
              GFQPD                         YNS+I A  N  + K   +L++ M+ S
Sbjct: 643 LKLGFQPDVVTYGTLMNGLCKMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNS 702

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
            I  +  ++  ++ +  + G +  A  + ++M     +P + + T L++ +    + D+A
Sbjct: 703 KIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEA 762

Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476
              FD M+  G  P+ R    +I  Y +   +DKA+ LL ++   G      TY  L+  
Sbjct: 763 VKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHG 822

Query: 477 LGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG 536
           L  +  +  A  L  ++   G+ P       L D   +     +A+  L  +E       
Sbjct: 823 LCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDAD 882

Query: 537 PDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASER 573
              +   I+G+   G L+ A+ +   + ++G     R
Sbjct: 883 ILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVR 919



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 82/386 (21%), Positives = 152/386 (39%), Gaps = 39/386 (10%)

Query: 220 PSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQT--NVRDYSKLIDAHAKENCLEDAE 277
           PS +D+  LL  + +  T+ +  +  L    +SF    +V   + +I++    N ++ A 
Sbjct: 43  PSTVDFNRLLTSIAK--TKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVDFAF 100

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
             L K+ + G  PD  T T L+      G +  A   F+ +   GFQP+   Y ++I   
Sbjct: 101 SALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGL 160

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
               Q     ++   MIT GI  +   Y +L+    +  + +    + N M   +  P +
Sbjct: 161 CKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDV 220

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD-------------------------- 431
            +   +V+A  + G   +A    D MI  G +P+                          
Sbjct: 221 FTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDT 280

Query: 432 ---DRCTASMIA------AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
                C A++I+       Y K   +DKA+ L  E+ +    P   TY  L+  L  +  
Sbjct: 281 MVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGR 340

Query: 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFER 542
           + +A  L  ++   G+ P      +L D   +     KA+  L  +E          +  
Sbjct: 341 LQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTT 400

Query: 543 IINGLLAGGFLQDAQRVHGLMEAQGF 568
           I++G+   G L+DA+ +   + ++G 
Sbjct: 401 ILDGMCRAGELEDARDLFSNLSSKGL 426



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 124/309 (40%), Gaps = 17/309 (5%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           FQ +V  Y  L++              L KM   GI PDI T   L+H            
Sbjct: 647 FQPDVVTYGTLMNG-------------LCKMITKGISPDIFTYNSLIHALCNLCEWKHVT 693

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
                + +    P+  V+++++ A    G   +   +VDMMI  G+E     Y AL+   
Sbjct: 694 TLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGH 753

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
               ++  A ++ + M  +   P + S  +L+  Y Q    D+A    + M   G   D 
Sbjct: 754 CLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADT 813

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               ++I        L  A+ L  E+   G  P   TY +L+D+L +   + EA  LL  
Sbjct: 814 VTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKA 873

Query: 493 I--SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAG 550
           I  S L +A      +++ D   RAG  + A      L +K  Q     +  +I+GL   
Sbjct: 874 IEGSNL-DADILVYNIAI-DGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKR 931

Query: 551 GFLQDAQRV 559
           G L +A ++
Sbjct: 932 GLLDEANKL 940



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/291 (20%), Positives = 126/291 (43%), Gaps = 17/291 (5%)

Query: 187 ITGKCKLITD----KILSLEKEEDPSPLLAEWKEL-----------LQPSRIDWINLLDR 231
           + G CK+IT      I +          L EWK +           + P+ + +  ++D 
Sbjct: 658 MNGLCKMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDA 717

Query: 232 L-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVP 290
           L +E    +   V ++++ +   + +V  Y+ L+D H   + +++A ++   M   G VP
Sbjct: 718 LCKEGMIAIAHDVVDMMI-KRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVP 776

Query: 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV 350
           ++ +  +L++ Y +   +D+A    E +   G   D   YN++I    + G+ +  ++L 
Sbjct: 777 NVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALF 836

Query: 351 DMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410
             M+ SG       Y  LL    +   +  A  +   +        +    + ++   +A
Sbjct: 837 HEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRA 896

Query: 411 GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD 461
           G+ + AR  F  +   G +PD R    MI    K+ LLD+A  L  +++++
Sbjct: 897 GELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDEN 947



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 115/276 (41%), Gaps = 37/276 (13%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ L+D H   N ++ A ++   M     V ++++   L++ Y K  ++D+A   F
Sbjct: 254 NVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLF 313

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG------------------ 357
           E +      P+   YN++I    + G+ +  +SL   M+  G                  
Sbjct: 314 EEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKN 373

Query: 358 ------------IERSE-----EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
                       IE S      +IY  +L    + G++  A  + + +  +  QP + + 
Sbjct: 374 RHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTY 433

Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIA-AYGKKNLLDKALNLLLELE 459
            +++    + G   +A   F  M + G  P+D CT ++I   + + N   + + LL E+ 
Sbjct: 434 NIMIHGLCKQGLLAEASKLFSEMNKNGCSPND-CTYNLITRGFLRNNEALRTIELLEEML 492

Query: 460 KDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             GF    +T T+LV  L    L    +Q+L K S 
Sbjct: 493 ARGFSVDVSTTTLLVGMLSDDGLDQSVKQILCKPSS 528



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/256 (18%), Positives = 102/256 (39%), Gaps = 11/256 (4%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +++ Y+ ++D   +   LEDA  +   ++  G+ P++ T  +++H   K G L  A + F
Sbjct: 394 DIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLF 453

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +  +G  P+   YN +   ++   +    + L++ M+  G          L+   +  
Sbjct: 454 SEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSDD 513

Query: 376 GDVRGAGQIT---------NIMRIEEFQPTLESCTLLVEAYG--QAGDPDQARSNFDYMI 424
           G  +   QI          +  ++    P   S +              D A S+F+ M+
Sbjct: 514 GLDQSVKQILCKPSSSSRPSGTQMRSLPPLFLSSSHNSLHSRSPHFNTLDDALSSFNRML 573

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
            +   P       ++ +  K       L+L  +++  G  P   T  +L++    L+ + 
Sbjct: 574 HMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLG 633

Query: 485 EAEQLLGKISELGEAP 500
            A  +L K+ +LG  P
Sbjct: 634 YAFSVLAKLLKLGFQP 649


>gi|168054024|ref|XP_001779433.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669118|gb|EDQ55711.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 570

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 67/304 (22%), Positives = 131/304 (43%), Gaps = 40/304 (13%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS LI    + N  + A     +M+E G VPD+VT + ++ +Y K G  D A   +E ++
Sbjct: 81  YSTLISCANRCNYQDAAMAWFDRMHEAGCVPDVVTYSTMIDVYGKMGKYDEAIALYERVK 140

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G++PDK  Y +M+  +  AG  +  +S+ + M  SG++    +Y  ++    + G + 
Sbjct: 141 QAGWKPDKVTYGTMVRLFGRAGYIRAAVSIFEEMKGSGVQPDAIVYNIMIACLGRAGRMG 200

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGD--------------------------- 412
            A ++   M  E  +P   + + ++E Y + G+                           
Sbjct: 201 HALKVFEEMEREGVKPNAVTLSTVMETYSRCGNVMEGLEVFQRLRQGVACDVIVYNAVLK 260

Query: 413 -------PDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
                    +A      M   GH+P+D    +MI+ Y KK +  +A     ++ + G++ 
Sbjct: 261 MCREAGLASEAEQYLREMTESGHQPNDWTYRNMISVYAKKGMAVEAHRTFSQMVEAGYQI 320

Query: 466 GPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSL------CDMYARAGIEK 519
               YT L+   G  +  N+ +++L +++ +  AP  ++   +      CD     GI +
Sbjct: 321 DVMAYTSLLQAYGNAKEYNKVQEILDEMTSVNCAPDERLCCVILNLLDSCDTDEELGILR 380

Query: 520 KALQ 523
             L+
Sbjct: 381 SCLR 384



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/321 (21%), Positives = 135/321 (42%), Gaps = 20/321 (6%)

Query: 249 SEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNL 308
           +E S   N+  Y+ ++    +    E +++I + M    + PD +T + L+   ++    
Sbjct: 35  AEHSSSLNIYTYNVMLKVLRRGRQWEFSQQIAEDMANADVRPDNITYSTLISCANRCNYQ 94

Query: 309 DRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLAL 368
           D A   F+ +   G  PD   Y++MI  Y   G+    ++L + +  +G +  +  Y  +
Sbjct: 95  DAAMAWFDRMHEAGCVPDVVTYSTMIDVYGKMGKYDEAIALYERVKQAGWKPDKVTYGTM 154

Query: 369 LRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH 428
           +R F + G +R A  I   M+    QP      +++   G+AG    A   F+ M R G 
Sbjct: 155 VRLFGRAGYIRAAVSIFEEMKGSGVQPDAIVYNIMIACLGRAGRMGHALKVFEEMEREGV 214

Query: 429 KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQ 488
           KP+    ++++  Y +   + + L +   L + G       Y  ++       L +EAEQ
Sbjct: 215 KPNAVTLSTVMETYSRCGNVMEGLEVFQRL-RQGVACDVIVYNAVLKMCREAGLASEAEQ 273

Query: 489 LLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLL 548
            L +++E G  P      ++  +YA+ G+  +A                    R  + ++
Sbjct: 274 YLREMTESGHQPNDWTYRNMISVYAKKGMAVEA-------------------HRTFSQMV 314

Query: 549 AGGFLQDAQRVHGLMEAQGFA 569
             G+  D      L++A G A
Sbjct: 315 EAGYQIDVMAYTSLLQAYGNA 335



 Score = 47.0 bits (110), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 53/116 (45%)

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           +AE+ L++M E+G  P+  T   ++ +Y+K G    A   F  +   G+Q D   Y S++
Sbjct: 270 EAEQYLREMTESGHQPNDWTYRNMISVYAKKGMAVEAHRTFSQMVEAGYQIDVMAYTSLL 329

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRI 390
            AY NA +      ++D M +      E +   +L     C      G + + +R+
Sbjct: 330 QAYGNAKEYNKVQEILDEMTSVNCAPDERLCCVILNLLDSCDTDEELGILRSCLRM 385


>gi|297725255|ref|NP_001174991.1| Os06g0710800 [Oryza sativa Japonica Group]
 gi|53792631|dbj|BAD53645.1| putative crp1 protein [Oryza sativa Japonica Group]
 gi|215693375|dbj|BAG88757.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255677390|dbj|BAH93719.1| Os06g0710800 [Oryza sativa Japonica Group]
          Length = 492

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 124/284 (43%), Gaps = 3/284 (1%)

Query: 229 LDRLREQNTQLYFKVAELVL--SEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNEN 286
           L RL   N  ++ K  +L++   E   + +V+ Y+ LID   K   L DA ++  KM   
Sbjct: 197 LVRLYRDNG-MWKKATDLIMEMQELGVELDVKIYNGLIDTFGKYGQLADARKVFDKMCAE 255

Query: 287 GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLG 346
           G+ PDI T   L+  + + GN  RA   F +++  G  PD K++ ++I      G+    
Sbjct: 256 GVKPDITTWNSLIRWHCRVGNTKRALRFFAAMQEEGMYPDPKIFVTIISRLGEQGKWDEI 315

Query: 347 MSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA 406
             L   M   G++ S  +Y  L+  + Q G  R A      ++ E  Q +     +L  A
Sbjct: 316 KKLFHGMRNRGLKESGAVYAVLVDIYGQYGHFRDAHDCVAALKAENLQLSPSIFCVLANA 375

Query: 407 YGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG 466
           Y Q G  +Q  +    M   G +P+      +I A+G      +AL +L  ++  G  P 
Sbjct: 376 YAQQGLCEQTVNVLQLMEAEGIEPNLVMLNLLINAFGTAGRHLEALAVLQHIKDSGMSPD 435

Query: 467 PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCD 510
             TYT L+    R +   +  ++  ++   G  P  K +  L D
Sbjct: 436 VVTYTTLMKAFMRAKKFEKVSEVYKEMEGAGCTPDRKAREMLND 479



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 136/344 (39%), Gaps = 36/344 (10%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y + I  HA  + L  + R+L  M   G+ P       L+   ++AG    A+     +R
Sbjct: 55  YDRGIQHHAGSD-LASSLRLLADMQAAGLRPSGAAYARLIRALARAGRTLEAEALLLEMR 113

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG--- 376
             G +PD   YN+++   ++    +L   L+  M   G+ R+   Y+ LL ++A+ G   
Sbjct: 114 RLGLRPDAAHYNALLEGLLSTAHLRLADRLLLQMADDGVARNRRTYMLLLNAYARAGRLE 173

Query: 377 ----------------DVRGAGQITN--------------IMRIEEFQPTLESCTL--LV 404
                           D  G   +                IM ++E    L+      L+
Sbjct: 174 DSWWVLGEMKRRGIRLDTAGYSTLVRLYRDNGMWKKATDLIMEMQELGVELDVKIYNGLI 233

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
           + +G+ G    AR  FD M   G KPD     S+I  + +     +AL     ++++G  
Sbjct: 234 DTFGKYGQLADARKVFDKMCAEGVKPDITTWNSLIRWHCRVGNTKRALRFFAAMQEEGMY 293

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQA 524
           P P  +  ++  LG     +E ++L   +   G      +   L D+Y + G  + A   
Sbjct: 294 PDPKIFVTIISRLGEQGKWDEIKKLFHGMRNRGLKESGAVYAVLVDIYGQYGHFRDAHDC 353

Query: 525 LGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
           +  L+A+  Q+ P  F  + N     G  +    V  LMEA+G 
Sbjct: 354 VAALKAENLQLSPSIFCVLANAYAQQGLCEQTVNVLQLMEAEGI 397



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 69/314 (21%), Positives = 140/314 (44%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           L+PS   +  L+  L      L  +   L +     + +   Y+ L++       L  A+
Sbjct: 82  LRPSGAAYARLIRALARAGRTLEAEALLLEMRRLGLRPDAAHYNALLEGLLSTAHLRLAD 141

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
           R+L +M ++G+  +  T  +L++ Y++AG L+ +      ++  G + D   Y++++  Y
Sbjct: 142 RLLLQMADDGVARNRRTYMLLLNAYARAGRLEDSWWVLGEMKRRGIRLDTAGYSTLVRLY 201

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
            + G  K    L+  M   G+E   +IY  L+ +F + G +  A ++ + M  E  +P +
Sbjct: 202 RDNGMWKKATDLIMEMQELGVELDVKIYNGLIDTFGKYGQLADARKVFDKMCAEGVKPDI 261

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
            +   L+  + + G+  +A   F  M   G  PD +   ++I+  G++   D+   L   
Sbjct: 262 TTWNSLIRWHCRVGNTKRALRFFAAMQEEGMYPDPKIFVTIISRLGEQGKWDEIKKLFHG 321

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI 517
           +   G +   A Y VLVD  G+     +A   +  +          I   L + YA+ G+
Sbjct: 322 MRNRGLKESGAVYAVLVDIYGQYGHFRDAHDCVAALKAENLQLSPSIFCVLANAYAQQGL 381

Query: 518 EKKALQALGFLEAK 531
            ++ +  L  +EA+
Sbjct: 382 CEQTVNVLQLMEAE 395



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 147/334 (44%), Gaps = 11/334 (3%)

Query: 210 LLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKVAE---LVLSEESFQTNVRDYSKLID 265
           LL E + L L+P    +  LL+ L    +  + ++A+   L ++++    N R Y  L++
Sbjct: 108 LLLEMRRLGLRPDAAHYNALLEGLL---STAHLRLADRLLLQMADDGVARNRRTYMLLLN 164

Query: 266 AHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQP 325
           A+A+   LED+  +L +M   GI  D    + LV +Y   G   +A +    ++  G + 
Sbjct: 165 AYARAGRLEDSWWVLGEMKRRGIRLDTAGYSTLVRLYRDNGMWKKATDLIMEMQELGVEL 224

Query: 326 DKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQIT 385
           D K+YN +I  +   GQ      + D M   G++     + +L+R   + G+ + A +  
Sbjct: 225 DVKIYNGLIDTFGKYGQLADARKVFDKMCAEGVKPDITTWNSLIRWHCRVGNTKRALRFF 284

Query: 386 NIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKK 445
             M+ E   P  +    ++   G+ G  D+ +  F  M   G K      A ++  YG+ 
Sbjct: 285 AAMQEEGMYPDPKIFVTIISRLGEQGKWDEIKKLFHGMRNRGLKESGAVYAVLVDIYGQY 344

Query: 446 NLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQ 505
                A + +  L+ +  +  P+ + VL +   +  L  +   +L  +   G  P   + 
Sbjct: 345 GHFRDAHDCVAALKAENLQLSPSIFCVLANAYAQQGLCEQTVNVLQLMEAEGIEPNLVML 404

Query: 506 VSLCDMYARAGIEKKALQALGFLEAKKEQ-MGPD 538
             L + +  AG   + L+AL  L+  K+  M PD
Sbjct: 405 NLLINAFGTAG---RHLEALAVLQHIKDSGMSPD 435


>gi|297808179|ref|XP_002871973.1| kinase family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297317810|gb|EFH48232.1| kinase family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 831

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 86/386 (22%), Positives = 167/386 (43%), Gaps = 46/386 (11%)

Query: 221 SRIDWIN-LLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERI 279
           SR   +N L++R R Q     F      L EE  + ++  Y+ L+ A  ++        +
Sbjct: 321 SRTKLMNGLIERGRPQEAHSIFNT----LIEEGHKPSIITYTTLVTALTRQKHFHSLLSL 376

Query: 280 LKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339
           + K+ +NG+ PD +    +++  S++GNLD+A + FE ++  G +P    +N++I  Y  
Sbjct: 377 ISKVQKNGLRPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGK 436

Query: 340 AGQPKLGMSLVDMMI------------------------------------TSGIERSEE 363
            G+ +    L++MM+                                    + G++    
Sbjct: 437 IGKLEESSRLLEMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSFGVKPDAV 496

Query: 364 IYLALLRSFAQCGDVRGA-GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
            +  L R++++ G    A   I   M   + +P + +C  +V  Y + G  ++A   F  
Sbjct: 497 TFNTLARAYSRIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYR 556

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
           M  LG  P+     S+I  +   N +D    ++  +E+ G +P   T++ L++    +  
Sbjct: 557 MKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGD 616

Query: 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--F 540
           +   E++   + E G  P       L   YARAG  +KA Q L   + +K  + P+   +
Sbjct: 617 MKRCEEIYRDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILN--QMRKFGVRPNVVIY 674

Query: 541 ERIINGLLAGGFLQDAQRVHGLMEAQ 566
            +II+G  + G ++ A +V+  M   
Sbjct: 675 TQIISGWCSAGEMKKAMQVYNKMRGS 700



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 106/228 (46%), Gaps = 7/228 (3%)

Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311
           +F T  R YS++      E      + I+ +M  N + P++ T   +V+ Y + G ++ A
Sbjct: 497 TFNTLARAYSRIGSTCTAE------DMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEA 550

Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
              F  ++  G  P+  V+NS+I  ++N         +VD+M   G++     +  L+ +
Sbjct: 551 LRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNA 610

Query: 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
           ++  GD++   +I   M      P + + ++L + Y +AG+P++A    + M + G +P+
Sbjct: 611 WSSVGDMKRCEEIYRDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPN 670

Query: 432 DRCTASMIAAYGKKNLLDKALNLLLELEKD-GFEPGPATYTVLVDWLG 478
                 +I+ +     + KA+ +  ++    G  P   TY  L+   G
Sbjct: 671 VVIYTQIISGWCSAGEMKKAMQVYNKMRGSVGLSPNLTTYETLIWGFG 718



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 73/360 (20%), Positives = 153/360 (42%), Gaps = 25/360 (6%)

Query: 227 NLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNEN 286
           NL+ R+ + N      + E +L +  F+   +DY   +    KE  L D E + K   E 
Sbjct: 243 NLIVRILDPNPMTRITIPE-ILEDVWFK---KDYKPAVFEEKKEANLADVEAVFKDSEEG 298

Query: 287 GI---------------VPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYN 331
            +                 D+ + T L++   + G    A   F +L   G +P    Y 
Sbjct: 299 RVQLRSFPCVICSGGTTCGDVRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSIITYT 358

Query: 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391
           +++ A          +SL+  +  +G+     ++ A++ + ++ G++  A +I   M+  
Sbjct: 359 TLVTALTRQKHFHSLLSLISKVQKNGLRPDTILFNAIINASSESGNLDQAMKIFEKMKES 418

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH-KPDDRCTASMIAAYGKKNLLDK 450
             +PT  +   L++ YG+ G  +++    + M+R    +P+DR    ++ A+  +  +++
Sbjct: 419 GCKPTASTFNTLIKGYGKIGKLEESSRLLEMMLRDEMLQPNDRTCNILVQAWCNQRKIEE 478

Query: 451 ALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL-LGKISELGEAPPFKIQVSLC 509
           A N++ +++  G +P   T+  L     R+     AE + + ++      P  +   ++ 
Sbjct: 479 AWNIVYKMQSFGVKPDAVTFNTLARAYSRIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIV 538

Query: 510 DMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQG 567
           + Y   G  ++AL+   F   K+  + P+   F  +I G L    +     V  LME  G
Sbjct: 539 NGYCEEGKMEEALRF--FYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFG 596


>gi|224056220|ref|XP_002298762.1| predicted protein [Populus trichocarpa]
 gi|222846020|gb|EEE83567.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 125/284 (44%), Gaps = 8/284 (2%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI    + +  E+A  + K M   G VPD VT   L+ +Y K+    R KEA E LR
Sbjct: 107 YNTLITCCRRGSLHEEAAAVFKDMKSMGFVPDKVTYNALLDVYGKS---RRTKEAMEVLR 163

Query: 320 S---HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
               +G  P    YNS+I AY   G  K  M L + M+  GI      Y  LL  F + G
Sbjct: 164 EMEVNGCSPSIVTYNSLISAYARDGLLKEAMELKNQMVEGGINLDVFTYTTLLSGFVRAG 223

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
               A ++   MR    +P + +   L++ +G  G   +    F+ +      PD     
Sbjct: 224 KDESAMRVFAEMRAAGCKPNICTFNALIKMHGNRGKFAEMMKVFEEIKNSCCVPDIVTWN 283

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
           +++A +G+  +  +   +  E+++ GF P   TY  L+    R    ++A  +  ++ E 
Sbjct: 284 TLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTYNTLISAYSRCGSFDQAMDIYKRMLEA 343

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF 540
           G  P      ++    AR G+ +++ +   F E K  +  P++ 
Sbjct: 344 GITPDLSTYNAVLAALARGGLWEQSEKI--FAEMKDGRCKPNEL 385



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/315 (22%), Positives = 141/315 (44%), Gaps = 2/315 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  ++ LI  H       +  ++ +++  +  VPDIVT   L+ ++ + G        F
Sbjct: 243 NICTFNALIKMHGNRGKFAEMMKVFEEIKNSCCVPDIVTWNTLLAVFGQNGMDSEVSGVF 302

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + ++  GF P++  YN++I AY   G     M +   M+ +GI      Y A+L + A+ 
Sbjct: 303 KEMKRAGFVPERDTYNTLISAYSRCGSFDQAMDIYKRMLEAGITPDLSTYNAVLAALARG 362

Query: 376 GDVRGAGQITNIMRIEEFQPT-LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
           G    + +I   M+    +P  L  C+LL  AY    +  +  +  + +     +P    
Sbjct: 363 GLWEQSEKIFAEMKDGRCKPNELTYCSLL-HAYANGKEIGRMLALAEEICSGVIEPHAVL 421

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
             +++    K +LL +A    LEL++ GF P  +T   ++   GR Q+  +  ++L  ++
Sbjct: 422 LKTLVLVNSKCDLLVEAEVAFLELKRKGFSPDLSTLNAMLSIYGRRQMFTKTNEILNFMN 481

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQ 554
           E G  P      SL  M++R+   +++ + L  + AK  +     +  +I      G ++
Sbjct: 482 ESGFTPSLATYNSLMYMHSRSENFERSEEVLKEILAKGIKPDTISYNTVIFAYCRNGRMK 541

Query: 555 DAQRVHGLMEAQGFA 569
           +A R+   M   G  
Sbjct: 542 EASRIFSEMRESGLV 556



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/356 (21%), Positives = 149/356 (41%), Gaps = 42/356 (11%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK--- 304
           L ++ F  +V  Y+ LI A        +A  + KKM E G  P ++T  V++++Y K   
Sbjct: 24  LHKDGFGLDVYAYTSLITACVSNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGM 83

Query: 305 --------------AGNL-------------------DRAKEAFESLRSHGFQPDKKVYN 331
                         AG L                   + A   F+ ++S GF PDK  YN
Sbjct: 84  PWNKIKGLFEGMKNAGVLPDEYTYNTLITCCRRGSLHEEAAAVFKDMKSMGFVPDKVTYN 143

Query: 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391
           +++  Y  + + K  M ++  M  +G   S   Y +L+ ++A+ G ++ A ++ N M   
Sbjct: 144 ALLDVYGKSRRTKEAMEVLREMEVNGCSPSIVTYNSLISAYARDGLLKEAMELKNQMVEG 203

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
                + + T L+  + +AG  + A   F  M   G KP+     ++I  +G +    + 
Sbjct: 204 GINLDVFTYTTLLSGFVRAGKDESAMRVFAEMRAAGCKPNICTFNALIKMHGNRGKFAEM 263

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
           + +  E++     P   T+  L+   G+  + +E   +  ++   G  P      +L   
Sbjct: 264 MKVFEEIKNSCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTYNTLISA 323

Query: 512 YARAGIEKKALQALG-FLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLME 564
           Y+R G   +A+      LEA    + PD   +  ++  L  GG  + ++++   M+
Sbjct: 324 YSRCGSFDQAMDIYKRMLEA---GITPDLSTYNAVLAALARGGLWEQSEKIFAEMK 376



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/272 (23%), Positives = 111/272 (40%), Gaps = 36/272 (13%)

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           V++ M  K G +  A      L   GF  D   Y S+I A V+ G+              
Sbjct: 3   VIISMLGKEGKVSVAASLLNDLHKDGFGLDVYAYTSLITACVSNGR-------------- 48

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDP-DQ 415
                                 R A  +   M  E  +PTL +  +++  YG+ G P ++
Sbjct: 49  ---------------------YREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNK 87

Query: 416 ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
            +  F+ M   G  PD+    ++I    + +L ++A  +  +++  GF P   TY  L+D
Sbjct: 88  IKGLFEGMKNAGVLPDEYTYNTLITCCRRGSLHEEAAAVFKDMKSMGFVPDKVTYNALLD 147

Query: 476 WLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQM 535
             G+ +   EA ++L ++   G +P      SL   YAR G+ K+A++    +      +
Sbjct: 148 VYGKSRRTKEAMEVLREMEVNGCSPSIVTYNSLISAYARDGLLKEAMELKNQMVEGGINL 207

Query: 536 GPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
               +  +++G +  G  + A RV   M A G
Sbjct: 208 DVFTYTTLLSGFVRAGKDESAMRVFAEMRAAG 239



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/301 (18%), Positives = 134/301 (44%), Gaps = 3/301 (0%)

Query: 258 RD-YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           RD Y+ LI A+++    + A  I K+M E GI PD+ T   ++   ++ G  +++++ F 
Sbjct: 314 RDTYNTLISAYSRCGSFDQAMDIYKRMLEAGITPDLSTYNAVLAALARGGLWEQSEKIFA 373

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
            ++    +P++  Y S++ AY N  +    ++L + + +  IE    +   L+   ++C 
Sbjct: 374 EMKDGRCKPNELTYCSLLHAYANGKEIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKC- 432

Query: 377 DVRGAGQITNI-MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           D+    ++  + ++ + F P L +   ++  YG+     +     ++M   G  P     
Sbjct: 433 DLLVEAEVAFLELKRKGFSPDLSTLNAMLSIYGRRQMFTKTNEILNFMNESGFTPSLATY 492

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            S++  + +    +++  +L E+   G +P   +Y  ++    R   + EA ++  ++ E
Sbjct: 493 NSLMYMHSRSENFERSEEVLKEILAKGIKPDTISYNTVIFAYCRNGRMKEASRIFSEMRE 552

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
            G  P      +    YA   + + A+  + ++     +   + +  +++G        D
Sbjct: 553 SGLVPDVITYNTFVASYAADSMFEDAIDVVRYMIKHGCKPNQNTYNSVVDGYCKHNHRDD 612

Query: 556 A 556
           A
Sbjct: 613 A 613



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 88/217 (40%), Gaps = 35/217 (16%)

Query: 243 VAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMY 302
           VA L L  + F  ++   + ++  + +         IL  MNE+G  P + T   L++M+
Sbjct: 440 VAFLELKRKGFSPDLSTLNAMLSIYGRRQMFTKTNEILNFMNESGFTPSLATYNSLMYMH 499

Query: 303 SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE 362
           S++ N +R++E  + + + G +PD   YN++I AY   G+                    
Sbjct: 500 SRSENFERSEEVLKEILAKGIKPDTISYNTVIFAYCRNGR-------------------- 539

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
                          ++ A +I + MR     P + +    V +Y      + A     Y
Sbjct: 540 ---------------MKEASRIFSEMRESGLVPDVITYNTFVASYAADSMFEDAIDVVRY 584

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELE 459
           MI+ G KP+     S++  Y K N  D A+  +  L 
Sbjct: 585 MIKHGCKPNQNTYNSVVDGYCKHNHRDDAIMFISSLH 621



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 101/237 (42%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  L+ A+A    +     + +++    I P  V    LV + SK   L  A+ AF  L+
Sbjct: 387 YCSLLHAYANGKEIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKCDLLVEAEVAFLELK 446

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             GF PD    N+M+  Y           +++ M  SG   S   Y +L+   ++  +  
Sbjct: 447 RKGFSPDLSTLNAMLSIYGRRQMFTKTNEILNFMNESGFTPSLATYNSLMYMHSRSENFE 506

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            + ++   +  +  +P   S   ++ AY + G   +A   F  M   G  PD     + +
Sbjct: 507 RSEEVLKEILAKGIKPDTISYNTVIFAYCRNGRMKEASRIFSEMRESGLVPDVITYNTFV 566

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
           A+Y   ++ + A++++  + K G +P   TY  +VD   +    ++A   +  + EL
Sbjct: 567 ASYAADSMFEDAIDVVRYMIKHGCKPNQNTYNSVVDGYCKHNHRDDAIMFISSLHEL 623



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/269 (21%), Positives = 102/269 (37%), Gaps = 36/269 (13%)

Query: 263 LIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG 322
           +I    KE  +  A  +L  ++++G   D+   T L+      G    A   F+ +   G
Sbjct: 4   IISMLGKEGKVSVAASLLNDLHKDGFGLDVYAYTSLITACVSNGRYREAVMVFKKMEEEG 63

Query: 323 FQPDKKVYNSMIMAYVNAGQPKLGM-SLVDMMITSGIERSEEIYLALLRSFAQCGDVRGA 381
            +P    YN ++  Y   G P   +  L + M  +G+   E  Y                
Sbjct: 64  CKPTLITYNVILNVYGKMGMPWNKIKGLFEGMKNAGVLPDEYTY---------------- 107

Query: 382 GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441
                         TL +C        +    ++A + F  M  +G  PD     +++  
Sbjct: 108 -------------NTLITCCR------RGSLHEEAAAVFKDMKSMGFVPDKVTYNALLDV 148

Query: 442 YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
           YGK     +A+ +L E+E +G  P   TY  L+    R  L+ EA +L  ++ E G    
Sbjct: 149 YGKSRRTKEAMEVLREMEVNGCSPSIVTYNSLISAYARDGLLKEAMELKNQMVEGGINLD 208

Query: 502 FKIQVSLCDMYARAGIEKKALQALGFLEA 530
                +L   + RAG ++ A++    + A
Sbjct: 209 VFTYTTLLSGFVRAGKDESAMRVFAEMRA 237



 Score = 40.0 bits (92), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 3/147 (2%)

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
            A +I+  GK+  +  A +LL +L KDGF      YT L+          EA  +  K+ 
Sbjct: 1   VAVIISMLGKEGKVSVAASLLNDLHKDGFGLDVYAYTSLITACVSNGRYREAVMVFKKME 60

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGF 552
           E G  P       + ++Y + G+    ++ L F   K   + PD+  +  +I     G  
Sbjct: 61  EEGCKPTLITYNVILNVYGKMGMPWNKIKGL-FEGMKNAGVLPDEYTYNTLITCCRRGSL 119

Query: 553 LQDAQRVHGLMEAQGFAASERLKVALI 579
            ++A  V   M++ GF   +    AL+
Sbjct: 120 HEEAAAVFKDMKSMGFVPDKVTYNALL 146


>gi|297736854|emb|CBI26055.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 142/317 (44%), Gaps = 18/317 (5%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI +  K    ED  +I K+M   G  PD+      +    KAG  ++ +  F  + 
Sbjct: 267 YTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREIN 326

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           +HGF PD + Y+ +I   V AG       L   M   G       Y A++  F + G V 
Sbjct: 327 AHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVN 386

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A Q+   M+++   PT+ +   +++   +    D+A   F+     G K +    +S+I
Sbjct: 387 KAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLI 446

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             +GK   +D+A  ++ EL + G  P   T+  L+D L + + INEA      + +L + 
Sbjct: 447 DGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDL-KC 505

Query: 500 PPFKIQVS-----LCDM--YARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAG 550
           PP +I  S     LC +  + +A +  + +Q LG        + P+   +  +I+GL   
Sbjct: 506 PPNQITYSILINGLCRVRKFNKAFVFWQEMQKLG--------LKPNTITYTTMISGLAKA 557

Query: 551 GFLQDAQRVHGLMEAQG 567
           G + +A  +    +A G
Sbjct: 558 GNILEASGLFSRFKANG 574



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 111/259 (42%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ LID   +E  L  A  I   M   G+ P+++T  +++    KA  L+ A   F
Sbjct: 158 NVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIF 217

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E +      P+   ++S+I      G+     SL + M+  G      +Y +L+RSF +C
Sbjct: 218 EGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKC 277

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G      +I   M      P L      ++   +AG+ ++ R+ F  +   G  PD R  
Sbjct: 278 GRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSY 337

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
           + +I    K  L ++   L   +++ G       Y  ++D   +   +N+A QLL ++  
Sbjct: 338 SILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKV 397

Query: 496 LGEAPPFKIQVSLCDMYAR 514
            G  P      S+ D  A+
Sbjct: 398 KGHPPTVVTYGSVIDGLAK 416



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 113/265 (42%), Gaps = 8/265 (3%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV   + +ID   K   LE+A  I + M++    P+ VT + L+    K G +D A   +
Sbjct: 193 NVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLY 252

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E +   G  P   VY S+I ++   G+ + G  +   M+ +G        L L+ ++  C
Sbjct: 253 EKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPD----LTLINTYMDC 308

Query: 376 ----GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
               G+      +   +    F P   S ++L+    +AG  ++    F  M   G   D
Sbjct: 309 VFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLD 368

Query: 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
                ++I  + K   ++KA  LL E++  G  P   TY  ++D L ++  ++EA  L  
Sbjct: 369 THAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFE 428

Query: 492 KISELGEAPPFKIQVSLCDMYARAG 516
           +    G      +  SL D + + G
Sbjct: 429 EAKSNGIKLNVVVYSSLIDGFGKVG 453



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 56/253 (22%), Positives = 105/253 (41%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           ++   F  + R YS LI    K     +   +   M E G V D      ++  + K+G 
Sbjct: 325 INAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGK 384

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +++A +  E ++  G  P    Y S+I       +      L +   ++GI+ +  +Y +
Sbjct: 385 VNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSS 444

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+  F + G +  A  I   +  +   P + +   L++A  +A + ++A   F  M  L 
Sbjct: 445 LIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLK 504

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P+    + +I    +    +KA     E++K G +P   TYT ++  L +   I EA 
Sbjct: 505 CPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEAS 564

Query: 488 QLLGKISELGEAP 500
            L  +    G  P
Sbjct: 565 GLFSRFKANGGIP 577



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 109/264 (41%), Gaps = 11/264 (4%)

Query: 263 LIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH----------MYSKAGNLDRAK 312
           L+    K   L +A  I++ M +    P     T+L+           +  KA  LD A 
Sbjct: 16  LVANCVKSRKLREAFDIIQTMRKFKFRPAFSAYTILIGKVGLMLLFPWVLCKANRLDEAV 75

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           E FE L  +   P    YN+MIM Y +AG+      L++     G   S   Y  +L   
Sbjct: 76  ELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCL 135

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            +   V  A +I   M+  +  P + +  +L++   + G  + A    D M R G  P+ 
Sbjct: 136 GKKRRVEEALRIFEEMK-RDAVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNV 194

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
                MI    K   L++A ++   ++     P   T++ L+D LG+   +++A  L  K
Sbjct: 195 LTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEK 254

Query: 493 ISELGEAPPFKIQVSLCDMYARAG 516
           + + G  P   +  SL   + + G
Sbjct: 255 MLDCGHVPGAIVYTSLIRSFFKCG 278



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/294 (21%), Positives = 124/294 (42%), Gaps = 1/294 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E+    +   Y+ +ID   K   +  A ++L++M   G  P +VT   ++   +K   
Sbjct: 360 MKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDR 419

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           LD A   FE  +S+G + +  VY+S+I  +   G+      +++ ++  G+  +   +  
Sbjct: 420 LDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNC 479

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           LL +  +  ++  A      M+  +  P   + ++L+    +    ++A   +  M +LG
Sbjct: 480 LLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLG 539

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            KP+     +MI+   K   + +A  L    + +G  P  A+Y  +++ L       +A 
Sbjct: 540 LKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIEGLSSANKAMDAY 599

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARA-GIEKKALQALGFLEAKKEQMGPDDF 540
            L  +    G     K  V L D   +A  +E+ A+      E  K Q     F
Sbjct: 600 ALFEETRLKGCNIHTKTCVVLLDALHKAECLEQAAIVGAVLKETAKSQHASRSF 653



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 61/323 (18%), Positives = 125/323 (38%), Gaps = 36/323 (11%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +I  +      ++A  +L++    G +P ++    ++    K   ++ A   FE ++
Sbjct: 93  YNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMK 152

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
                P+   YN +I      G+    + + D M  +G+  +      ++    +   + 
Sbjct: 153 RDAV-PNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLE 211

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  I   M  +   P   + + L++  G+ G  D A S ++ M+  GH P      S+I
Sbjct: 212 EACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLI 271

Query: 440 AAY---GKK-------------------NLLDKALN-------------LLLELEKDGFE 464
            ++   G+K                    L++  ++             L  E+   GF 
Sbjct: 272 RSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFI 331

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQA 524
           P   +Y++L+  L +  L NE  +L   + E G         ++ D + ++G   KA Q 
Sbjct: 332 PDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQL 391

Query: 525 LGFLEAKKEQMGPDDFERIINGL 547
           L  ++ K        +  +I+GL
Sbjct: 392 LEEMKVKGHPPTVVTYGSVIDGL 414



 Score = 43.5 bits (101), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 75/183 (40%), Gaps = 15/183 (8%)

Query: 353 MITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYG---- 408
           M  SG   S  I + L+ +  +   +R A  I   MR  +F+P   + T+L+   G    
Sbjct: 1   MSLSGFGPSSNISIELVANCVKSRKLREAFDIIQTMRKFKFRPAFSAYTILIGKVGLMLL 60

Query: 409 ------QAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
                 +A   D+A   F+ + +    P      +MI  YG     D+A  LL   +  G
Sbjct: 61  FPWVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKG 120

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISE--LGEAPPFKIQVSLCDMYARAGIEKK 520
             P    Y  ++  LG+ + + EA ++  ++    +   P + I   L DM  R G    
Sbjct: 121 SIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDAVPNVPTYNI---LIDMLCREGKLNA 177

Query: 521 ALQ 523
           AL+
Sbjct: 178 ALE 180


>gi|186510147|ref|NP_188293.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274280|sp|Q9LUR2.1|PP238_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g16710, mitochondrial; Flags: Precursor
 gi|11994626|dbj|BAB02763.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642334|gb|AEE75855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 507

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/328 (21%), Positives = 148/328 (45%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F+ ++  ++ L++ +   N +EDA  +  ++   G  P++VT T L+    K  +L+ A 
Sbjct: 149 FEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAV 208

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           E F  + ++G +P+   YN+++      G+      L+  M+   IE +   + AL+ +F
Sbjct: 209 ELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAF 268

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + G +  A ++ N+M      P + +   L+      G  D+AR  F  M R G  P++
Sbjct: 269 VKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNE 328

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               ++I  + K   ++  + +  E+ + G      TYTVL+     +   + A+++  +
Sbjct: 329 VIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQ 388

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
           +S     P  +    L D     G  +KAL    ++  ++  +    +  II G+   G 
Sbjct: 389 MSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGK 448

Query: 553 LQDAQRVHGLMEAQGFAASERLKVALIS 580
           ++DA  +   + ++G   +      +IS
Sbjct: 449 VEDAFDLFCSLFSKGMKPNVITYTTMIS 476



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 111/245 (45%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  ++ LIDA  K   L +A+ +   M +  + PD+ T   L++     G LD A++ F
Sbjct: 257 NVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMF 316

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +  +G  P++ +Y ++I  +  + + + GM +   M   G+  +   Y  L++ +   
Sbjct: 317 YLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLV 376

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G    A ++ N M      P + +  +L++     G  ++A   F+YM +     +    
Sbjct: 377 GRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTY 436

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +I    K   ++ A +L   L   G +P   TYT ++    R  LI+EA+ L  K+ E
Sbjct: 437 TIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKE 496

Query: 496 LGEAP 500
            G  P
Sbjct: 497 DGFLP 501



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 111/256 (43%)

Query: 215 KELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           K  ++P+ I +  L+D   +    +  K    V+ + S   +V  Y  LI+       L+
Sbjct: 251 KRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLD 310

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           +A ++   M  NG  P+ V  T L+H + K+  ++   + F  +   G   +   Y  +I
Sbjct: 311 EARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLI 370

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
             Y   G+P +   + + M +         Y  LL      G V  A  I   MR  E  
Sbjct: 371 QGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMD 430

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
             + + T++++   + G  + A   F  +   G KP+     +MI+ + ++ L+ +A +L
Sbjct: 431 INIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSL 490

Query: 455 LLELEKDGFEPGPATY 470
             ++++DGF P  + Y
Sbjct: 491 FKKMKEDGFLPNESVY 506



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 62/289 (21%), Positives = 122/289 (42%)

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A   L KM + G  PD+VT T L++ Y     ++ A   F+ +   GF+P+   Y ++I 
Sbjct: 137 ASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIR 196

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
                      + L + M T+G   +   Y AL+    + G    A  +   M     +P
Sbjct: 197 CLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEP 256

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
            + + T L++A+ + G   +A+  ++ MI++   PD     S+I       LLD+A  + 
Sbjct: 257 NVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMF 316

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
             +E++G  P    YT L+    + + + +  ++  ++S+ G          L   Y   
Sbjct: 317 YLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLV 376

Query: 516 GIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLME 564
           G    A +    + +++       +  +++GL   G ++ A  +   M 
Sbjct: 377 GRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMR 425



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 69/311 (22%), Positives = 118/311 (37%), Gaps = 43/311 (13%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
             DA  +  +M  +  +P I+  T L+ + +K    D     FE ++  G  P     N 
Sbjct: 64  FNDALDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNI 123

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           ++     + QP      +  M+  G                                   
Sbjct: 124 VMHCVCLSSQPCRASCFLGKMMKLG----------------------------------- 148

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
           F+P L + T L+  Y      + A + FD ++ +G KP+     ++I    K   L+ A+
Sbjct: 149 FEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAV 208

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
            L  ++  +G  P   TY  LV  L  +    +A  LL  + +    P      +L D +
Sbjct: 209 ELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAF 268

Query: 513 ARAG--IEKKALQALGFLEAKKEQMGPDDFE--RIINGLLAGGFLQDAQRVHGLMEAQGF 568
            + G  +E K L  +      +  + PD F    +INGL   G L +A+++  LME  G 
Sbjct: 269 VKVGKLMEAKELYNV----MIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGC 324

Query: 569 AASERLKVALI 579
             +E +   LI
Sbjct: 325 YPNEVIYTTLI 335


>gi|410109943|gb|AFV61051.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rotundifolia]
          Length = 425

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 120/261 (45%), Gaps = 6/261 (2%)

Query: 218 LQPSRIDWINLLD---RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           L+PS + +  L++   RL + +     K A L       Q +V  YS LI+   KE+ ++
Sbjct: 167 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLA---SGVQPDVYTYSVLINGLCKESKMD 223

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           DA  +  +M   G+VP+ VT T L+  + K G +D A E ++ + S    PD   YN++I
Sbjct: 224 DANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLI 283

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
                 G  K    L+D M   G++  +  Y  L+    + GD+  A +    M  E  +
Sbjct: 284 YGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIR 343

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
               + T L+    Q G    A      M+ +G KPD      +I  + KK  + K   L
Sbjct: 344 LDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKL 403

Query: 455 LLELEKDGFEPGPATYTVLVD 475
           L E++++G  P   TY VL++
Sbjct: 404 LKEMQRNGHAPSVVTYNVLMN 424



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/284 (21%), Positives = 136/284 (47%), Gaps = 5/284 (1%)

Query: 220 PSRIDWINLLDRLREQNTQLYFKVAELV---LSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           P+ + + N+L     ++  +  +VA+ V   +++   + +V  Y+ L++ + +   L++ 
Sbjct: 133 PASLYFFNILMHRFCKDGDI--RVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEG 190

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
            R+   M  +G+ PD+ T +VL++   K   +D A E F+ +   G  P+   + ++I  
Sbjct: 191 FRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDG 250

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           +   G+  L M +   M++  +      Y  L+    + GD++ A  + + M ++  +P 
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPD 310

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
             + T L++   + GD D A  +   MI+   + DD    ++I+   ++     A  +L 
Sbjct: 311 KFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
           E+   G +P   TYT++++   +   + +  +LL ++   G AP
Sbjct: 371 EMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAP 414



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 87/191 (45%)

Query: 285 ENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPK 344
           E G    +    +L+H + K G++  A+  F+++   G +P    YN+++  Y+  G   
Sbjct: 129 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 188

Query: 345 LGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
            G  L   M+ SG++     Y  L+    +   +  A ++ + M ++   P   + T L+
Sbjct: 189 EGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLI 248

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
           + + + G  D A   +  M+     PD     ++I    KK  L +A +L+ E+   G +
Sbjct: 249 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLK 308

Query: 465 PGPATYTVLVD 475
           P   TYT L+D
Sbjct: 309 PDKFTYTTLID 319



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/267 (20%), Positives = 110/267 (41%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E  +  ++  ++ L+    K+  +  A+ +   + + G+ P +V+   L++ Y + G+LD
Sbjct: 129 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 188

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
                  ++ + G QPD   Y+ +I       +      L D M+  G+  +   +  L+
Sbjct: 189 EGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLI 248

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               + G V  A +I   M  +   P L +   L+    + GD  QA    D M   G K
Sbjct: 249 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLK 308

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     ++I    K+  LD A      + ++        YT L+  L +     +AE++
Sbjct: 309 PDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAG 516
           L ++  +G  P       + + + + G
Sbjct: 369 LREMLSVGLKPDIGTYTMIINEFCKKG 395



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 61/307 (19%), Positives = 126/307 (41%), Gaps = 2/307 (0%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGI-VPDIVTSTVLVHMYSKAGNLDRAK 312
           ++++  +S LI A+ +   L DA        E+ + VP      VL H+  K        
Sbjct: 63  RSDIYVFSGLITAYLESGFLRDAIECYTLTREHKLWVPFDTCRKVLEHL-MKLKYFKLVW 121

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
             +E +   G+      +N ++  +   G  ++  S+ D +   G+  S   Y  L+  +
Sbjct: 122 GFYEDILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGY 181

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + GD+    ++ + M     QP + + ++L+    +    D A   FD M+  G  P+ 
Sbjct: 182 IRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNG 241

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               ++I  + K   +D A+ +  ++      P   TY  L+  L +   + +A  L+ +
Sbjct: 242 VTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDE 301

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
           +S  G  P      +L D   + G    A +    +  +  ++    +  +I+GL   G 
Sbjct: 302 MSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGR 361

Query: 553 LQDAQRV 559
             DA+++
Sbjct: 362 SVDAEKM 368


>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
          Length = 746

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 78/352 (22%), Positives = 155/352 (44%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           +Q   + + +LL+ L E +     +     + E   + +V  ++ L+ A  + + +  A 
Sbjct: 146 IQADTVVYNHLLNVLVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTAV 205

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
            +L++M+ +G+ PD  T T L+  + + G++  A      +   G  P K   N +I  Y
Sbjct: 206 LMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLINGY 265

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
              G+ +  +  +   I +G E  +  Y   +    Q G V  A ++ ++M  E   P +
Sbjct: 266 CKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDV 325

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
            +  ++V    + G  ++A+   + M+  G  PD     ++I A    N L++AL+L  +
Sbjct: 326 FTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQ 385

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI 517
           +   G  P   T+ +L++ L ++     A +L  ++   G  P      +L D     G 
Sbjct: 386 VTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGK 445

Query: 518 EKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
             KAL  L  +E+         +  II+GL     +++A+ V   M+ QG +
Sbjct: 446 LGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGIS 497



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 95/413 (23%), Positives = 157/413 (38%), Gaps = 73/413 (17%)

Query: 242 KVAELVLSEESFQTNVRD---YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVL 298
           + A L+L E S      D   ++ L+    +E  ++ A R+  +M E G  P  VT  VL
Sbjct: 202 RTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVL 261

Query: 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
           ++ Y K G ++ A    +   ++GF+PD+  YN+ +      G     + ++D+M+  G 
Sbjct: 262 INGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGH 321

Query: 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIM-----------------------RIEE--- 392
           +     Y  ++    + G +  A  I N M                       R+EE   
Sbjct: 322 DPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALD 381

Query: 393 ---------FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYG 443
                      P + +  +L+ A  + GDP  A   F+ M   G  PD+    ++I    
Sbjct: 382 LARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLC 441

Query: 444 KKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE---------------- 487
               L KAL+LL E+E  G      TY  ++D L +   I EAE                
Sbjct: 442 SLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAI 501

Query: 488 -------------------QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFL 528
                              QL+ ++   G  P      S+   Y + G  KKA   L  +
Sbjct: 502 TFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTM 561

Query: 529 EAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
            A   ++    +  +INGL   G  Q A ++   M  +G  A+ +    +I S
Sbjct: 562 TANGFEVDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGMRATPKAYNPVIQS 614



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 73/344 (21%), Positives = 148/344 (43%), Gaps = 6/344 (1%)

Query: 242 KVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA-ERILKKMNE-NGIVPDIVTSTVLV 299
           KV    +  E  Q  V      ++++A++    DA + +L +++   GI  D V    L+
Sbjct: 98  KVLVTEMRREGHQVRVGVVHSFLESYARQQLFVDAVDLVLNQLDPLFGIQADTVVYNHLL 157

Query: 300 HMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
           ++  +   +   +  +  +   G +PD   +N+++ A   A Q +  + +++ M +SG+ 
Sbjct: 158 NVLVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGVA 217

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
             E  +  L++ F + G ++ A ++   M      PT  +  +L+  Y + G  + A   
Sbjct: 218 PDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLINGYCKLGRVEDALGY 277

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
               I  G +PD     + +    +   +  AL ++  + ++G +P   TY ++V+ L +
Sbjct: 278 IQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCK 337

Query: 480 LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD- 538
              + EA+ +L ++ E G  P      +L          ++AL     +  K   + PD 
Sbjct: 338 NGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKG--LSPDV 395

Query: 539 -DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
             F  +IN L   G  Q A R+   M++ G    E     LI +
Sbjct: 396 YTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDN 439



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 99/219 (45%), Gaps = 1/219 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +ID   K+  +E+AE +  +M+  GI  + +T   L+    K   +D A +    + 
Sbjct: 468 YNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMI 527

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           S G QP+   YNS++  Y   G  K    ++  M  +G E     Y  L+    + G  +
Sbjct: 528 SEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKAGRTQ 587

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++   MRI+  + T ++   ++++  +  +   A + F  M  +G  PD      + 
Sbjct: 588 VALKLLRGMRIKGMRATPKAYNPVIQSLFRRNNTRDAMNLFREMTEVGEPPDAFTYKIVF 647

Query: 440 AAYGK-KNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
               +    + +A + LLE+   GF P  +++ +L + L
Sbjct: 648 RGLCRGGGSIREAFDFLLEMVDKGFIPEFSSFRMLAEGL 686



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 100/245 (40%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  ++ LI+A  K    + A R+ ++M  +G  PD VT   L+      G L +A +  
Sbjct: 394 DVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLL 453

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + + S G       YN++I       + +    + D M   GI R+   +  L+    + 
Sbjct: 454 KEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKD 513

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
             +  A Q+ + M  E  QP   +   ++  Y + GD  +A      M   G + D    
Sbjct: 514 KRIDDANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTY 573

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I    K      AL LL  +   G    P  Y  ++  L R     +A  L  +++E
Sbjct: 574 GTLINGLCKAGRTQVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNNTRDAMNLFREMTE 633

Query: 496 LGEAP 500
           +GE P
Sbjct: 634 VGEPP 638


>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 137/320 (42%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LID   K   +  A R+  +M +  I PD +T T ++    + G +  A + F  + 
Sbjct: 261 YTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMV 320

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
               +PD+  Y ++I  Y   G+ K   SL + M+  G+  +   Y AL     +CG+V 
Sbjct: 321 CKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVD 380

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++ + M  +  +  + +   LV    +AG+ DQA      M   G  PD     +++
Sbjct: 381 TANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLM 440

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            AY K   + +A  LL ++     +P   T+ VL++      ++ + E+LL  + E G  
Sbjct: 441 DAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIM 500

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P      SL   Y      +   +    + AK      + +  +I G      +++A  +
Sbjct: 501 PNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFL 560

Query: 560 HGLMEAQGFAASERLKVALI 579
           H  M  +GF  +     ALI
Sbjct: 561 HRDMVGKGFNLTVSSYNALI 580



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 107/235 (45%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N   Y+ +I    K   + +AER+L++M   GI PD V  T L+  + K GN+  A   F
Sbjct: 222 NPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLF 281

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + ++     PD   Y ++I      G+      L   M+   +E  E  Y AL+  + + 
Sbjct: 282 DEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKE 341

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G ++ A  + N M      P + + T L +   + G+ D A      M R G + +    
Sbjct: 342 GKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTY 401

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
            S++    K   +D+A+ L+ ++E  GF P   TYT L+D   + + +  A +LL
Sbjct: 402 NSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELL 456



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/314 (22%), Positives = 134/314 (42%)

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
           +++++M   G+ P+  T   ++ +  K G +  A+     + S G  PD  +Y ++I  +
Sbjct: 209 KLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGF 268

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
              G       L D M    I      Y A++    Q G V  A ++ + M  +  +P  
Sbjct: 269 CKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDE 328

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
            + T L++ Y + G   +A S  + M+++G  P+     ++     K   +D A  LL E
Sbjct: 329 VTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHE 388

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI 517
           + + G E    TY  LV+ L +   I++A +L+  +   G  P      +L D Y ++  
Sbjct: 389 MCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSRE 448

Query: 518 EKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVA 577
             +A + L  +  ++ Q     F  ++NG    G L+D +++   M  +G   +     +
Sbjct: 449 MVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNS 508

Query: 578 LISSQTFNRQRQPT 591
           LI         + T
Sbjct: 509 LIKQYCIRNNMRAT 522



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/228 (20%), Positives = 98/228 (42%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +  +  + N+  Y+ L++   K   ++ A +++K M   G  PD VT T L+  Y K+  
Sbjct: 389 MCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSRE 448

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           + RA E    +     QP    +N ++  +  +G  + G  L+  M+  GI  +   Y +
Sbjct: 449 MVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNS 508

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L++ +    ++R   +I   M  +   P   +  +L++ + +A +  +A      M+  G
Sbjct: 509 LIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKG 568

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
                    ++I  + K+    +A  L  ++ ++G       Y +  D
Sbjct: 569 FNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIFAD 616



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/274 (20%), Positives = 113/274 (41%), Gaps = 2/274 (0%)

Query: 218 LQPSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L+P  + +  L+D   +E   +  F +   +L +     N+  Y+ L D   K   ++ A
Sbjct: 324 LEPDEVTYTALIDGYCKEGKMKEAFSLHNQML-QMGLTPNIVTYTALADGLCKCGEVDTA 382

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
             +L +M   G+  +I T   LV+   KAGN+D+A +  + +   GF PD   Y +++ A
Sbjct: 383 NELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDA 442

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           Y  + +      L+  M+   ++ +   +  L+  F   G +    ++   M  +   P 
Sbjct: 443 YCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPN 502

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
             +   L++ Y    +       +  M   G  PD      +I  + K   + +A  L  
Sbjct: 503 ATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHR 562

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           ++   GF    ++Y  L+    + +   EA +L 
Sbjct: 563 DMVGKGFNLTVSSYNALIKGFYKRKKFLEARELF 596



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/260 (21%), Positives = 102/260 (39%), Gaps = 15/260 (5%)

Query: 347 MSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA 406
           + L++ M   G++ +   Y  ++    + G V  A ++   M  E   P     T L++ 
Sbjct: 208 LKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDG 267

Query: 407 YGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG 466
           + + G+   A   FD M +    PD     ++I    +   + +A  L  E+     EP 
Sbjct: 268 FCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPD 327

Query: 467 PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALG 526
             TYT L+D   +   + EA  L  ++ ++G  P      +L D   + G    A + L 
Sbjct: 328 EVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLH 387

Query: 527 FLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS----- 581
            +  K  ++    +  ++NGL   G +  A ++   ME  GF         L+ +     
Sbjct: 388 EMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSR 447

Query: 582 ----------QTFNRQRQPT 591
                     Q  +R+ QPT
Sbjct: 448 EMVRAHELLRQMLDRELQPT 467



 Score = 39.7 bits (91), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 51/135 (37%), Gaps = 37/135 (27%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E+    N   Y+ LI  +   N +     I + M   G+VPD  T  +L+  + KA N+ 
Sbjct: 496 EKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMK 555

Query: 310 RA-----------------------------------KEAFESLRSHGFQPDKKVYNSMI 334
            A                                   +E FE +R  G   D+++YN  I
Sbjct: 556 EAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYN--I 613

Query: 335 MAYVNAGQPKLGMSL 349
            A +N  + K+ ++L
Sbjct: 614 FADINYDEGKMELTL 628


>gi|356565780|ref|XP_003551115.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g25630-like [Glycine max]
          Length = 622

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 140/292 (47%), Gaps = 3/292 (1%)

Query: 242 KVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM 301
           K+ +L+  E + + N++  + LI A  K     +A  ++ KM  +G+ PD+V+   +   
Sbjct: 256 KLLDLMSIEGNVKPNLKTCNMLIRALCKMEHTSEAWNVVYKMTTSGMQPDVVSFNTVAIS 315

Query: 302 YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS 361
           Y++ G   + +     +R +G +P+ +    +I  Y   G+ +  +  V  +   G++ +
Sbjct: 316 YAQNGKTVQVEAMILEMRRNGLKPNDRTCTIIISGYCREGKVREALRFVYRIKDLGLQPN 375

Query: 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421
             I  +L+  F    D  G  ++ N+M     +P + + + ++ A+ QAG  ++ +  ++
Sbjct: 376 LIILNSLVNGFVDTMDRDGVNEVLNLMEEFYIRPDVITYSTIMNAWSQAGFLEKCKEIYN 435

Query: 422 YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ 481
            M++ G KPD    + +   Y +   ++KA  LL  + K G +P    +T ++     + 
Sbjct: 436 NMLKSGVKPDGHAYSILAKGYVRAQEMEKAEELLTVMTKSGVQPNVVIFTTVMSGWCSVG 495

Query: 482 LINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE 533
            ++ A ++  K+ E G +P  K   +L   YA A   K+  +A G L+  +E
Sbjct: 496 RMDNAMRVFDKMGEFGVSPNLKTFETLIWGYAEA---KQPWKAEGMLQIMEE 544



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 141/339 (41%), Gaps = 24/339 (7%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L E   Q ++  Y+ L++A   +   +    I+  + E  + PD      LV+ +++ GN
Sbjct: 156 LIEGGHQPSLATYTTLLNALTTQKYFKPIHSIVSLVEEKQMKPDSRFFNALVNAFAEFGN 215

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMM-ITSGIERSEEIYL 366
           ++ AK+  + ++  G +P    YN++I  Y  AG+P   + L+D+M I   ++ + +   
Sbjct: 216 IEDAKKVVQKMKESGLKPSACTYNTLIKGYGIAGKPDESIKLLDLMSIEGNVKPNLKTCN 275

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+R+  +      A  +   M     QP + S   +  +Y Q G   Q  +    M R 
Sbjct: 276 MLIRALCKMEHTSEAWNVVYKMTTSGMQPDVVSFNTVAISYAQNGKTVQVEAMILEMRRN 335

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G KP+DR    +I+ Y ++  + +AL  +  ++  G +P       LV+        +  
Sbjct: 336 GLKPNDRTCTIIISGYCREGKVREALRFVYRIKDLGLQPNLIILNSLVNGFVDTMDRDGV 395

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
            ++L  + E    P      ++ + +++A          GFLE  KE         I N 
Sbjct: 396 NEVLNLMEEFYIRPDVITYSTIMNAWSQA----------GFLEKCKE---------IYNN 436

Query: 547 LLAGGFLQDAQR----VHGLMEAQGFAASERLKVALISS 581
           +L  G   D         G + AQ    +E L   +  S
Sbjct: 437 MLKSGVKPDGHAYSILAKGYVRAQEMEKAEELLTVMTKS 475



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/314 (21%), Positives = 130/314 (41%), Gaps = 40/314 (12%)

Query: 292 IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVD 351
           + + T ++++  K+G    A   F++L   G QP    Y +++ A       K   S+V 
Sbjct: 130 VQSRTKVMNILIKSGKPQEAIVIFQNLIEGGHQPSLATYTTLLNALTTQKYFKPIHSIVS 189

Query: 352 MMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAG 411
           ++    ++     + AL+ +FA+ G++  A ++   M+    +P+  +   L++ YG AG
Sbjct: 190 LVEEKQMKPDSRFFNALVNAFAEFGNIEDAKKVVQKMKESGLKPSACTYNTLIKGYGIAG 249

Query: 412 DPDQARSNFDYMIRLGH-KPDDRCTASMIAAYGKKNLLDKALN----------------- 453
            PD++    D M   G+ KP+ +    +I A  K     +A N                 
Sbjct: 250 KPDESIKLLDLMSIEGNVKPNLKTCNMLIRALCKMEHTSEAWNVVYKMTTSGMQPDVVSF 309

Query: 454 ------------------LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
                             ++LE+ ++G +P   T T+++    R   + EA + + +I +
Sbjct: 310 NTVAISYAQNGKTVQVEAMILEMRRNGLKPNDRTCTIIISGYCREGKVREALRFVYRIKD 369

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFL 553
           LG  P   I  SL + +          + L  +E  +  + PD   +  I+N     GFL
Sbjct: 370 LGLQPNLIILNSLVNGFVDTMDRDGVNEVLNLME--EFYIRPDVITYSTIMNAWSQAGFL 427

Query: 554 QDAQRVHGLMEAQG 567
           +  + ++  M   G
Sbjct: 428 EKCKEIYNNMLKSG 441



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/209 (21%), Positives = 95/209 (45%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
            Q N+   + L++        +    +L  M E  I PD++T + +++ +S+AG L++ K
Sbjct: 372 LQPNLIILNSLVNGFVDTMDRDGVNEVLNLMEEFYIRPDVITYSTIMNAWSQAGFLEKCK 431

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           E + ++   G +PD   Y+ +   YV A + +    L+ +M  SG++ +  I+  ++  +
Sbjct: 432 EIYNNMLKSGVKPDGHAYSILAKGYVRAQEMEKAEELLTVMTKSGVQPNVVIFTTVMSGW 491

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
              G +  A ++ + M      P L++   L+  Y +A  P +A      M     +P  
Sbjct: 492 CSVGRMDNAMRVFDKMGEFGVSPNLKTFETLIWGYAEAKQPWKAEGMLQIMEEFHVQPKK 551

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKD 461
                +  A+    L + A  LL+ ++ +
Sbjct: 552 STILLVAEAWCFAGLKEGAKTLLITVKTE 580



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/286 (17%), Positives = 120/286 (41%), Gaps = 1/286 (0%)

Query: 185 KPITGKCKLITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKV 243
           KP    C ++   +  +E   +   ++ +     +QP  + +  +     +    +  + 
Sbjct: 268 KPNLKTCNMLIRALCKMEHTSEAWNVVYKMTTSGMQPDVVSFNTVAISYAQNGKTVQVEA 327

Query: 244 AELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS 303
             L +     + N R  + +I  + +E  + +A R + ++ + G+ P+++    LV+ + 
Sbjct: 328 MILEMRRNGLKPNDRTCTIIISGYCREGKVREALRFVYRIKDLGLQPNLIILNSLVNGFV 387

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363
              + D   E    +     +PD   Y++++ A+  AG  +    + + M+ SG++    
Sbjct: 388 DTMDRDGVNEVLNLMEEFYIRPDVITYSTIMNAWSQAGFLEKCKEIYNNMLKSGVKPDGH 447

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
            Y  L + + +  ++  A ++  +M     QP +   T ++  +   G  D A   FD M
Sbjct: 448 AYSILAKGYVRAQEMEKAEELLTVMTKSGVQPNVVIFTTVMSGWCSVGRMDNAMRVFDKM 507

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPAT 469
              G  P+ +   ++I  Y +     KA  +L  +E+   +P  +T
Sbjct: 508 GEFGVSPNLKTFETLIWGYAEAKQPWKAEGMLQIMEEFHVQPKKST 553



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 85/174 (48%), Gaps = 1/174 (0%)

Query: 246 LVLSEESF-QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK 304
           L L EE + + +V  YS +++A ++   LE  + I   M ++G+ PD    ++L   Y +
Sbjct: 399 LNLMEEFYIRPDVITYSTIMNAWSQAGFLEKCKEIYNNMLKSGVKPDGHAYSILAKGYVR 458

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
           A  +++A+E    +   G QP+  ++ +++  + + G+    M + D M   G+  + + 
Sbjct: 459 AQEMEKAEELLTVMTKSGVQPNVVIFTTVMSGWCSVGRMDNAMRVFDKMGEFGVSPNLKT 518

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418
           +  L+  +A+      A  +  IM     QP   +  L+ EA+  AG  + A++
Sbjct: 519 FETLIWGYAEAKQPWKAEGMLQIMEEFHVQPKKSTILLVAEAWCFAGLKEGAKT 572


>gi|449444228|ref|XP_004139877.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492643|ref|XP_004159059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 585

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 116/253 (45%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + ++  + +V  +S LID   KE  + +A++ L+ M   GIVPD+ T T L+  +   G+
Sbjct: 263 MVDQGVRPDVVTFSALIDTLCKEGMVIEAKKFLETMMLRGIVPDLFTFTSLIEGFCLVGD 322

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           LD AKE F S+ S G++PD   Y  +I  Y      +  M L + M+  G     + +  
Sbjct: 323 LDSAKELFLSMPSKGYEPDVISYTVLIYGYCKTFNVEEAMKLYNEMLRVGKWPDMKTFCV 382

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           LL+     G V  A ++  +++       L  C++ ++   + G   +A   F+ +    
Sbjct: 383 LLKGLFLAGKVGDAKKLFGVVKPHAVPKNLYICSVFLDGLCKNGCLFEAMELFNELKSYN 442

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            K D      +I    K   L+ A  L  +L ++G +P   TY ++++   +   ++ A 
Sbjct: 443 MKLDIESFNCLIDGLCKARKLETAWELFEKLSQEGLQPDVVTYCIMINGFCKNGQVDNAN 502

Query: 488 QLLGKISELGEAP 500
            L   + E G  P
Sbjct: 503 ILFQMMEENGCTP 515



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/333 (21%), Positives = 144/333 (43%), Gaps = 8/333 (2%)

Query: 167 EVAEKIHERGEMILPEEP-----KPITGKCKLITDKILSLEKEEDPSPLLAEWKEL-LQP 220
            +A K+H+  EM+    P     KP      +I D++  + K ++   L  E  +  ++P
Sbjct: 213 NLALKLHQ--EMLNGTSPYAINCKPNIFSYNIIIDELCKIGKWKEAKRLFNEMVDQGVRP 270

Query: 221 SRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERIL 280
             + +  L+D L ++   +  K     +       ++  ++ LI+       L+ A+ + 
Sbjct: 271 DVVTFSALIDTLCKEGMVIEAKKFLETMMLRGIVPDLFTFTSLIEGFCLVGDLDSAKELF 330

Query: 281 KKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNA 340
             M   G  PD+++ TVL++ Y K  N++ A + +  +   G  PD K +  ++     A
Sbjct: 331 LSMPSKGYEPDVISYTVLIYGYCKTFNVEEAMKLYNEMLRVGKWPDMKTFCVLLKGLFLA 390

Query: 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
           G+      L  ++    + ++  I    L    + G +  A ++ N ++    +  +ES 
Sbjct: 391 GKVGDAKKLFGVVKPHAVPKNLYICSVFLDGLCKNGCLFEAMELFNELKSYNMKLDIESF 450

Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
             L++   +A   + A   F+ + + G +PD      MI  + K   +D A  L   +E+
Sbjct: 451 NCLIDGLCKARKLETAWELFEKLSQEGLQPDVVTYCIMINGFCKNGQVDNANILFQMMEE 510

Query: 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
           +G  P   TY+ L+    +   + E  +LL K+
Sbjct: 511 NGCTPNLLTYSALLHGFYKNNKLEEVVKLLHKM 543



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 61/320 (19%), Positives = 131/320 (40%), Gaps = 10/320 (3%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           ++  ++ L+ A AK         + KKM+  G+ P+  T  +L++       +     A 
Sbjct: 90  SIISFNLLLGALAKIKHYSQVFSLYKKMHLAGLSPNFFTLNILINCLCNVNRVREGLSAM 149

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G+ PD   Y S+I       +      L   M   G   +   Y  L++   + 
Sbjct: 150 AGIMRRGYIPDVVTYTSLIKGLCMEHRISEATRLFIRMQKLGCWPNVVTYGTLIKGLCRT 209

Query: 376 GDVRGAGQITNIM------RIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
           G++  A ++   M           +P + S  ++++   + G   +A+  F+ M+  G +
Sbjct: 210 GNINLALKLHQEMLNGTSPYAINCKPNIFSYNIIIDELCKIGKWKEAKRLFNEMVDQGVR 269

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD    +++I    K+ ++ +A   L  +   G  P   T+T L++    +  ++ A++L
Sbjct: 270 PDVVTFSALIDTLCKEGMVIEAKKFLETMMLRGIVPDLFTFTSLIEGFCLVGDLDSAKEL 329

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGL 547
              +   G  P       L   Y +    ++A++   + E  +    PD   F  ++ GL
Sbjct: 330 FLSMPSKGYEPDVISYTVLIYGYCKTFNVEEAMKL--YNEMLRVGKWPDMKTFCVLLKGL 387

Query: 548 LAGGFLQDAQRVHGLMEAQG 567
              G + DA+++ G+++   
Sbjct: 388 FLAGKVGDAKKLFGVVKPHA 407


>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
          Length = 895

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 140/314 (44%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y  +I+   +    ++A  +L++M   G+ P+      L+  +SK GN+  A EA 
Sbjct: 452 NVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEAL 511

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E +      PD   YNS+I      G+ +        +   G+   E  Y  L+  + + 
Sbjct: 512 EKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKT 571

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G++  A Q+   M     +P  ++ T L+E Y ++ D ++  S    M+  G KPD+   
Sbjct: 572 GNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIY 631

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +I    +   ++ A  +L E+EK+G  P    Y+ L+  L ++  + +A  LL ++++
Sbjct: 632 GIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAK 691

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
            G  P      +L D + R+G   +A      + AK        +  +I+G    G + D
Sbjct: 692 EGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITD 751

Query: 556 AQRVHGLMEAQGFA 569
           A  ++  M  +G A
Sbjct: 752 AFDLYKEMLDRGIA 765



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 126/278 (45%), Gaps = 5/278 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           LS ++F      Y  L++   K + L++A+ +L +M+ +G+ P+IV    LV  + K G 
Sbjct: 309 LSPDAFT-----YGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGK 363

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
              A +  + + S G QP+K +Y+++I      GQ      L+  MI  G+      Y  
Sbjct: 364 TAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNP 423

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L++   Q  D  GA ++ N MR     P + S  +++    Q G+  +A +  + MI  G
Sbjct: 424 LMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEG 483

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            KP+    A +I  + K+  +  A   L ++ K    P    Y  L+  L  +  + EAE
Sbjct: 484 LKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAE 543

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
           +   ++ + G  P       L   Y + G  +KA Q L
Sbjct: 544 EYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLL 581



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 79/354 (22%), Positives = 161/354 (45%), Gaps = 10/354 (2%)

Query: 216 ELLQPSRIDWINLL-DRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           E L+P+   +  L+    +E N  L  +  E  +++ +   ++  Y+ LI   +    +E
Sbjct: 482 EGLKPNAFMYAPLIIGHSKEGNISLACEALE-KMTKANVHPDLFCYNSLIKGLSTVGRME 540

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           +AE    ++ + G+VPD  T + L+H Y K GNL++A +    + + G +P+   Y  ++
Sbjct: 541 EAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLL 600

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
             Y  +   +   S++  M+ SG +    IY  ++R+ ++  ++  A  +   +      
Sbjct: 601 EGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLV 660

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P L   + L+    +  D ++A    D M + G +P   C  ++I  + +   + +A N+
Sbjct: 661 PDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNV 720

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
              +   G  P   TYT L+D   +   I +A  L  ++ + G AP   +   L    + 
Sbjct: 721 FDSILAKGLVPNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAPDAFVYNVLATGCSD 780

Query: 515 AGIEKKALQALGFLEAKKEQMGPDD---FERIINGLLAGGFLQDAQR-VHGLME 564
           A   ++AL    FL  +    G  +   F  +++G    G LQ+ ++ +H +M+
Sbjct: 781 AADLEQAL----FLTEEMFNRGYANVSLFNTLVHGFCKRGKLQETEKLLHVMMD 830



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 90/400 (22%), Positives = 168/400 (42%), Gaps = 7/400 (1%)

Query: 184 PKPITGKCKLITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLL-DRLREQNTQLYF 241
           P P T    ++ D         + + ++    +L L P+R     LL D LR    +L +
Sbjct: 169 PSPSTAVLDVLVDTYKKTGSVRNAAQVVLMMADLGLAPTRRCCNGLLKDLLRADAMELLW 228

Query: 242 KVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM 301
           K+    +       +V  YS  I+AH K    + A+++ ++M       + VT  V++  
Sbjct: 229 KLKGF-MEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISG 287

Query: 302 YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS 361
             ++G ++ A    E +  +G  PD   Y +++       + K   +L+D M  SG++ +
Sbjct: 288 LCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPN 347

Query: 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421
             +Y  L+  F + G    A  I   M     QP       L+    + G   +A     
Sbjct: 348 IVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLK 407

Query: 422 YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ 481
            MI++G +PD      ++  + +++  D A  LL E+   G  P   +Y ++++ L +  
Sbjct: 408 EMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNG 467

Query: 482 LINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF- 540
              EA  LL ++   G  P   +   L   +++ G    A +AL   +  K  + PD F 
Sbjct: 468 ESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALE--KMTKANVHPDLFC 525

Query: 541 -ERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
              +I GL   G +++A+  +  ++ +G    E     LI
Sbjct: 526 YNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLI 565



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 80/377 (21%), Positives = 169/377 (44%), Gaps = 18/377 (4%)

Query: 218 LQPSRIDWINLLDRLRE-----QNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC 272
           +QP++I + NL+  L +     + ++L  ++ ++ L  ++F      Y+ L+  H +++ 
Sbjct: 379 VQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFT-----YNPLMQGHFQQHD 433

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
            + A  +L +M  +GI+P++ +  ++++   + G    A    E + S G +P+  +Y  
Sbjct: 434 KDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAP 493

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I+ +   G   L    ++ M  + +      Y +L++  +  G +  A +    ++   
Sbjct: 494 LIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRG 553

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P   + + L+  Y + G+ ++A      M+  G KP+      ++  Y K N  +K  
Sbjct: 554 LVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVS 613

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
           ++L  +   G +P    Y +++  L R + +  A  +L ++ + G  P   I  SL    
Sbjct: 614 SILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGL 673

Query: 513 AR-AGIEKKALQALGFL-EAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
            + A +EK    A+G L E  KE + P    +  +I+G    G +  A+ V   + A+G 
Sbjct: 674 CKIADMEK----AVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGL 729

Query: 569 AASERLKVALISSQTFN 585
             +     ALI     N
Sbjct: 730 VPNCVTYTALIDGNCKN 746



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 112/268 (41%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +S    + N+  Y  L+D   KE    +A  ILK+M   G+ P+ +    L+    K G 
Sbjct: 339 MSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQ 398

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L RA +  + +   G +PD   YN ++  +           L++ M  SGI  +   Y  
Sbjct: 399 LGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGI 458

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++    Q G+ + AG +   M  E  +P       L+  + + G+   A    + M +  
Sbjct: 459 MINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKAN 518

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD  C  S+I        +++A     +++K G  P   TY+ L+    +   + +A+
Sbjct: 519 VHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKAD 578

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARA 515
           QLL ++   G  P       L + Y ++
Sbjct: 579 QLLRQMLNSGLKPNADTYTDLLEGYFKS 606



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 66/302 (21%), Positives = 125/302 (41%), Gaps = 2/302 (0%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
            + N   Y+ L++ + K N  E    IL+ M  +G  PD     +++   S++ N++ A 
Sbjct: 589 LKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAF 648

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
                +  +G  PD  +Y+S+I         +  + L+D M   G+E     Y AL+  F
Sbjct: 649 MVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGF 708

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + GD+  A  + + +  +   P   + T L++   + GD   A   +  M+  G  PD 
Sbjct: 709 CRSGDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAPDA 768

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
                +         L++AL L  E+   G+    + +  LV    +   + E E+LL  
Sbjct: 769 FVYNVLATGCSDAADLEQALFLTEEMFNRGYA-NVSLFNTLVHGFCKRGKLQETEKLLHV 827

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKK-EQMGPDDFERIINGLLAGG 551
           + +    P  +    +   + +AG   +A +    L+ KK  Q   D F  +   ++  G
Sbjct: 828 MMDREIVPNAQTVEKVVSEFGKAGKLGEAHRVFAELQQKKASQSATDRFSLLFTDMINKG 887

Query: 552 FL 553
            +
Sbjct: 888 LI 889



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 79/173 (45%), Gaps = 1/173 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +++E  +  +  Y+ LID   +   +  A  +   +   G+VP+ VT T L+    K G+
Sbjct: 689 MAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGD 748

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A + ++ +   G  PD  VYN +     +A   +  + L + M   G   +  ++  
Sbjct: 749 ITDAFDLYKEMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGYA-NVSLFNT 807

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
           L+  F + G ++   ++ ++M   E  P  ++   +V  +G+AG   +A   F
Sbjct: 808 LVHGFCKRGKLQETEKLLHVMMDREIVPNAQTVEKVVSEFGKAGKLGEAHRVF 860


>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
 gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
          Length = 1013

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 82/367 (22%), Positives = 162/367 (44%), Gaps = 10/367 (2%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSE---ESFQTNVRDYSKLIDAHAKENCLE 274
           +QP++I + NL+  L +         A L+L +   +S + +   Y+ +I+ H + +  +
Sbjct: 380 VQPNKITYDNLVRGLCKMGQ---MDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKK 436

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           DA R+L +M   GI P++ T ++++H   ++G  ++A +  E + + G +P+  VY  +I
Sbjct: 437 DAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLI 496

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
             Y   G   L   + D M    +      Y +L+   ++ G V  + +    M+     
Sbjct: 497 SGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLL 556

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P   + + L+  Y + GD + A      M+  G KP+D     ++ +Y K + ++K  + 
Sbjct: 557 PNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSST 616

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
              +   G       Y +L+  L     +  A ++L  I + G  P   +  SL     +
Sbjct: 617 FKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCK 676

Query: 515 AGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572
               +KA   L   E  K+ + P+   +  +I+GL   G +  A+ V   + A+G   + 
Sbjct: 677 TADREKAFGILD--EMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNC 734

Query: 573 RLKVALI 579
               +LI
Sbjct: 735 VTYTSLI 741



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 149/343 (43%), Gaps = 2/343 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +S    + NV  Y+ LID   +E   ++A +++K+M   G+ P+ +T   LV    K G 
Sbjct: 340 MSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQ 399

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +DRA    + +     +PD   YN +I  +      K    L+  M  +GI  +   Y  
Sbjct: 400 MDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSI 459

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++    Q G+   A  +   M  +  +P       L+  Y + G+   A   FD M ++ 
Sbjct: 460 MIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVN 519

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD  C  S+I    K   ++++     ++++ G  P   TY+ L+    +   +  AE
Sbjct: 520 VLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAE 579

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
           QL+ ++ + G  P   I + L + Y ++   +K       +  +   +    +  +I+ L
Sbjct: 580 QLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNL 639

Query: 548 LAGGFLQDAQRVHGLMEAQGFAASERLKVALIS--SQTFNRQR 588
            + G ++ A RV   +E  G      +  +LIS   +T +R++
Sbjct: 640 SSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREK 682



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 155/354 (43%), Gaps = 5/354 (1%)

Query: 228 LLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENG 287
           L D LR     L +KV E ++       +V  YS LI+A+ K    + A+++L +M E G
Sbjct: 216 LKDLLRADAMALLWKVREFMVGA-GISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERG 274

Query: 288 IVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGM 347
              + VT  VL+    ++G ++ A    + +  +G  PD   Y ++I     + +     
Sbjct: 275 CGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAK 334

Query: 348 SLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAY 407
           +L+D M  + ++ +  +Y  L+  F + G+   A ++   M     QP   +   LV   
Sbjct: 335 ALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGL 394

Query: 408 GQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGP 467
            + G  D+A      M+R  H+PD      +I  + + +    A  LL E+E  G  P  
Sbjct: 395 CKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNV 454

Query: 468 ATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGF 527
            TY++++  L +     +A  LL +++  G  P   +   L   Y R G    A +   F
Sbjct: 455 YTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEI--F 512

Query: 528 LEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
            +  K  + PD   +  +I GL   G ++++ +    M+ +G   +E     LI
Sbjct: 513 DKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLI 566



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/354 (20%), Positives = 158/354 (44%), Gaps = 7/354 (1%)

Query: 218 LQPSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L+P+   +  L+    RE N  L  ++ +  +++ +   ++  Y+ LI   +K   +E++
Sbjct: 485 LKPNAFVYAPLISGYCREGNVSLACEIFD-KMTKVNVLPDLYCYNSLIFGLSKVGRVEES 543

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
            +   +M E G++P+  T + L+H Y K G+L+ A++  + +   G +P+  +Y  ++ +
Sbjct: 544 TKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLES 603

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           Y  +   +   S    M+  G+     IY  L+ + +  G++  A ++ + +      P 
Sbjct: 604 YFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPD 663

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           +   + L+    +  D ++A    D M + G  P+  C  ++I    K   +  A N+  
Sbjct: 664 VHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFN 723

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
            +   G  P   TYT L+D   ++  I+ A  L  ++   G  P   +   L    + AG
Sbjct: 724 SILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAG 783

Query: 517 IEKKALQAL--GFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
             ++A+  +   FL   +       F  +++G    G +Q+  ++  ++  +G 
Sbjct: 784 DLEQAMFLIEEMFL---RGHASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGL 834



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 68/312 (21%), Positives = 132/312 (42%), Gaps = 1/312 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E     N   YS LI  + K   LE AE+++++M + G+ P+ V    L+  Y K+ +
Sbjct: 550 MQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDD 609

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +++    F+S+   G   D ++Y  +I    ++G  +    ++  +  +G      +Y +
Sbjct: 610 IEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSS 669

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    +  D   A  I + M  +   P +     L++   ++GD   AR+ F+ ++  G
Sbjct: 670 LISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKG 729

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P+     S+I    K   +  A  L  E+   G  P    Y+VL         + +A 
Sbjct: 730 LVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAM 789

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
            L+ ++   G A       +L D + + G  ++ L+ L  +  +         E II+GL
Sbjct: 790 FLIEEMFLRGHASISSFN-NLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGL 848

Query: 548 LAGGFLQDAQRV 559
              G L +   +
Sbjct: 849 SEAGKLSEVHTI 860



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 120/292 (41%), Gaps = 30/292 (10%)

Query: 215 KELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           K+ + P+ + +  L+D L +     Y +     +  +    N   Y+ LID   K   + 
Sbjct: 692 KKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDIS 751

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFES--LRSHGFQPDKKVYNS 332
           +A  +  +M   GI PD    +VL    S AG+L++A    E   LR H        +N+
Sbjct: 752 NAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHA---SISSFNN 808

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR-IE 391
           ++  +   G+ +  + L+ +++  G+                   V  A  I NI+  + 
Sbjct: 809 LVDGFCKRGKMQETLKLLHVIMGRGL-------------------VPNALTIENIISGLS 849

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQAR---SNFDYMIRLGHKPDDRCTASMIAAYGKKNLL 448
           E     E  T+ VE   Q      AR   S F  MI  G  P D     MI  + K+  L
Sbjct: 850 EAGKLSEVHTIFVE-LQQKTSESAARHFSSLFMDMINQGKIPLD-VVDDMIRDHCKEGNL 907

Query: 449 DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
           DKAL L   +       G ++Y  +VD L R   ++EA  LL ++ + G  P
Sbjct: 908 DKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLKEMDKRGICP 959



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 53/255 (20%), Positives = 98/255 (38%), Gaps = 35/255 (13%)

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           VLV  Y K+G +  A E    +R  G  P  +  N+++   + A    L   + + M+ +
Sbjct: 179 VLVDTYKKSGRVQDAAEVVLMMRDRGMAPSIRCCNALLKDLLRADAMALLWKVREFMVGA 238

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
           GI                                    P + + + L+EAY +  + D A
Sbjct: 239 GI-----------------------------------SPDVYTYSTLIEAYCKVREFDTA 263

Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476
           +     M   G   +      +IA   +   +++A     ++E  G  P   TY  L++ 
Sbjct: 264 KKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALING 323

Query: 477 LGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG 536
           L + +  NEA+ LL ++S     P   +  +L D + R G   +A + +  + A   Q  
Sbjct: 324 LCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPN 383

Query: 537 PDDFERIINGLLAGG 551
              ++ ++ GL   G
Sbjct: 384 KITYDNLVRGLCKMG 398


>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 116/251 (46%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E     NV  ++ LIDA AKE  L +AE++  +M +  I P+IVT   L++ +     LD
Sbjct: 319 ERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLD 378

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A++ F  + S    PD   YN++I  +  A + + GM L   M   G+  +   Y  L+
Sbjct: 379 EAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLI 438

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
           +   Q GD   A +I   M  +   P + + ++L++   + G  ++A   F+Y+ +   +
Sbjct: 439 QGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKME 498

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           P+      MI    K   ++   +L   L   G +P    YT ++    R  L  EA+ L
Sbjct: 499 PNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADAL 558

Query: 490 LGKISELGEAP 500
             ++ E G  P
Sbjct: 559 FREMKEDGTLP 569



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 123/274 (44%), Gaps = 7/274 (2%)

Query: 205 EDPSPLLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKVAELVLSE---ESFQTNVRDY 260
            D S LL++  E  + P+ + + +L+D   ++   +    AE +  E    S   N+  Y
Sbjct: 308 SDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIE---AEKLFDEMIQRSIDPNIVTY 364

Query: 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320
           + LI+     + L++A++I   M     +PD+VT   L+  + KA  ++   E F  +  
Sbjct: 365 NSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQ 424

Query: 321 HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRG 380
            G   +   YN++I     AG   +   +   M++ G+      Y  LL    + G +  
Sbjct: 425 RGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEK 484

Query: 381 AGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIA 440
           A  +   ++  + +P + +  +++E   +AG  +     F  +   G KP+     +MI+
Sbjct: 485 ALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMIS 544

Query: 441 AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
            + +K L ++A  L  E+++DG  P    Y  L+
Sbjct: 545 GFCRKGLKEEADALFREMKEDGTLPDSGCYNTLI 578



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/327 (21%), Positives = 140/327 (42%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           Q ++  Y  +++   K   ++ A  +LKKM +  I  ++V    ++    K  ++D A +
Sbjct: 218 QPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFD 277

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            F  + + G +PD   YNS+I    N G+      L+  MI   I  +   + +L+ +FA
Sbjct: 278 LFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFA 337

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           + G +  A ++ + M      P + +   L+  +      D+A+  F  M+     PD  
Sbjct: 338 KEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVV 397

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
              ++I  + K   +++ + L  E+ + G      TY  L+  L +    + A+++  K+
Sbjct: 398 TYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKM 457

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFL 553
              G  P       L D   + G  +KAL    +L+  K +     +  +I G+   G +
Sbjct: 458 VSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKV 517

Query: 554 QDAQRVHGLMEAQGFAASERLKVALIS 580
           +D   +   +  +G   +  +   +IS
Sbjct: 518 EDGWDLFCSLSLKGVKPNVIIYTTMIS 544



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 82/365 (22%), Positives = 145/365 (39%), Gaps = 56/365 (15%)

Query: 207 PSPLLAEWKELLQP-SRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLID 265
           P P + E+ +LL   ++++  +++  L EQ   L                N   YS L++
Sbjct: 77  PFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNL------------GIPHNHYTYSILLN 124

Query: 266 AHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQP 325
              + + L  A  +L KM + G  PDIVT + L++ Y     +  A    + +   G++P
Sbjct: 125 CFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEMGYKP 184

Query: 326 DKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQIT 385
           D   +N++I       +    ++L+D M+  G                            
Sbjct: 185 DTVTFNTLIHGLFLHNKASEAVALIDRMVARGC--------------------------- 217

Query: 386 NIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKK 445
                   QP L +   +V    + GD D A S    M +   + +     ++I    K 
Sbjct: 218 --------QPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKY 269

Query: 446 NLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQ 505
             +D A +L  ++E  G +P   TY  L+  L      ++A +LL  + E    P     
Sbjct: 270 KHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTF 329

Query: 506 VSLCDMYARAG--IEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHG 561
            SL D +A+ G  IE + L    F E  +  + P+   +  +ING      L +AQ++  
Sbjct: 330 NSLIDAFAKEGKLIEAEKL----FDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFT 385

Query: 562 LMEAQ 566
           LM ++
Sbjct: 386 LMVSK 390



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 126/265 (47%), Gaps = 12/265 (4%)

Query: 221 SRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERIL 280
           S I+   + DRL E       ++  L++S++    +V  Y+ LI    K   +E+   + 
Sbjct: 366 SLINGFCMHDRLDEAQ-----QIFTLMVSKDCLP-DVVTYNTLIKGFCKAKRVEEGMELF 419

Query: 281 KKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNA 340
           ++M++ G+V + VT   L+    +AG+ D A++ F+ + S G  PD   Y+ ++      
Sbjct: 420 REMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKY 479

Query: 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
           G+ +  + + + +  S +E +   Y  ++    + G V     +   + ++  +P +   
Sbjct: 480 GKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIY 539

Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN--LLLEL 458
           T ++  + + G  ++A + F  M   G  PD  C  ++I A  +    DKA +  L+ E+
Sbjct: 540 TTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDG--DKAASAELIKEM 597

Query: 459 EKDGFEPGPATYTVLVDWL--GRLQ 481
              GF    +T +++++ L  GRL+
Sbjct: 598 RSCGFVGDASTISMVINMLHDGRLE 622


>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
 gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
          Length = 609

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 160/365 (43%), Gaps = 16/365 (4%)

Query: 214 WKELLQPS-RIDWIN----LLDRLREQNT-QLYFKVAELVLSEE-SFQTNVRDYSKLIDA 266
           +KE+L  S R+D ++    +    RE+   + Y    E+ + E+ +++ +V  Y+ LID 
Sbjct: 139 YKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGAWKPDVVTYTALIDG 198

Query: 267 HAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPD 326
             K   LE A ++L  M     VP++VT + L+H   KAG+LD+A + F  + S G  P+
Sbjct: 199 FCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPN 258

Query: 327 KKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITN 386
              Y ++I     A +      L+D M  +        Y ALL  + + G +  A Q+  
Sbjct: 259 VVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGYCRLGRIEEAKQLFK 318

Query: 387 IMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM-IRLGHKPDDRCTASMIAAYGKK 445
            M  +   P   + T LV  +  A   ++AR   + M    G  PD    + ++A Y + 
Sbjct: 319 EMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRA 378

Query: 446 NLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQ 505
               +A   + E+      P   TY+ L+D L +   +N A ++L  + +        + 
Sbjct: 379 KRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAMEVLKNVDKPDVVTYTIVI 438

Query: 506 VSLCDMYARAGIEK--KALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLM 563
             LC      G ++  +AL  L  +  K+ +     F  +I  L   G + +A ++   M
Sbjct: 439 EGLC------GTDRTEEALTLLEEMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAM 492

Query: 564 EAQGF 568
            A G 
Sbjct: 493 AAHGL 497



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 141/311 (45%), Gaps = 9/311 (2%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKM-NENGIVPDIVTSTVLVHMYSKAGNLD 309
           +S   ++  YS +I+   K+  ++ A  IL++M   +G+ PD+VT T +V    + G +D
Sbjct: 39  KSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGMAPDVVTYTSVVDGLCRDGKMD 98

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
           RA E    ++  G +PDK  ++++I  + NA +    + L   ++TS          AL+
Sbjct: 99  RACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSCRLDAVSSSALI 158

Query: 370 RSFAQCGDVRGAGQITNIMRIEE---FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
               +   +  A ++   M + E   ++P + + T L++ + ++G+ ++A      M   
Sbjct: 159 TGLCRERRIGEAYELFQEMEMREDGAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGR 218

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
              P+    +S++    K   LD+AL+L   +   G  P   TYT L+  L     ++ A
Sbjct: 219 KCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAA 278

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
             L+ +++            +L D Y R G  ++A Q   F E   +   PD   RI   
Sbjct: 279 RLLMDEMTATCCPADTVSYNALLDGYCRLGRIEEAKQL--FKEMAAKSCLPD---RITYT 333

Query: 547 LLAGGFLQDAQ 557
            L  GF   ++
Sbjct: 334 CLVRGFCNASR 344



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/308 (22%), Positives = 143/308 (46%), Gaps = 12/308 (3%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+D + +   +E+A+++ K+M     +PD +T T LV  +  A  L+ A+   E+++
Sbjct: 297 YNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMK 356

Query: 320 SH-GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
           +  G  PD   Y+ ++  Y  A +       +  MI   +  +   Y +L+    + G V
Sbjct: 357 TAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRV 416

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             A ++   +     +P + + T+++E        ++A +  + M+    +P      S+
Sbjct: 417 NHAMEVLKNVD----KPDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTFNSV 472

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL---GRLQLINEAEQLL----G 491
           I A  +   +D+A  LL+ +   G EPG  TYT L++     GR+++  E  +++     
Sbjct: 473 IGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRRKAK 532

Query: 492 KISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGG 551
           K S      P +   +L     +A    KA+  +  L +++ +   +D   I++GLL  G
Sbjct: 533 KSSSAANLVPEQAFSALIRGLCKAREIDKAMAVVEELRSRECEPAEEDCLAIVDGLLRAG 592

Query: 552 FLQDAQRV 559
             ++A ++
Sbjct: 593 RTEEAGKL 600



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 99/242 (40%), Gaps = 32/242 (13%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N   YS LID   K   +  A  +LK +++    PD+VT T+++         + A    
Sbjct: 399 NAVTYSSLIDGLCKAGRVNHAMEVLKNVDK----PDVVTYTIVIEGLCGTDRTEEALTLL 454

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E + +   +P    +NS+I A    G       L+  M   G+E     Y  LL  F++ 
Sbjct: 455 EEMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRT 514

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A ++  +MR +  + +  S   LV        P+QA S                 
Sbjct: 515 GRMEIAYELFEVMRRKAKKSS--SAANLV--------PEQAFS----------------- 547

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I    K   +DKA+ ++ EL     EP       +VD L R     EA +L+  IS+
Sbjct: 548 -ALIRGLCKAREIDKAMAVVEELRSRECEPAEEDCLAIVDGLLRAGRTEEAGKLINSISK 606

Query: 496 LG 497
           +G
Sbjct: 607 VG 608


>gi|302819015|ref|XP_002991179.1| hypothetical protein SELMODRAFT_448320 [Selaginella moellendorffii]
 gi|300141007|gb|EFJ07723.1| hypothetical protein SELMODRAFT_448320 [Selaginella moellendorffii]
          Length = 561

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 106/224 (47%)

Query: 268 AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK 327
           A +   +DAE + +K+    + PD+ + T LV+ Y+KA   + A  AF+ + + G +P +
Sbjct: 305 ACQKTWKDAEDVFRKLQAAKLDPDVFSYTALVNAYAKARRAECAHAAFDDMIAAGIRPTQ 364

Query: 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNI 387
             YN++I AY     P+   +++  M  +G   + E Y +L+ ++     +  A Q    
Sbjct: 365 VAYNALINAYAKCKDPEGARAVLKQMKQNGCTPTVESYTSLISAYVSVNLMAKAEQTVLR 424

Query: 388 MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447
           M+  + QP L++  +L+  Y      D    +F+ M   G +P+      ++ AYG  + 
Sbjct: 425 MKEADLQPNLQTFCILMTGYANGNKLDNMMRSFETMKLAGLEPNRHVYTVLVNAYGSNDD 484

Query: 448 LDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
            D A+    ++   G +P P   TVL+      +   E  +LLG
Sbjct: 485 FDSAIIWYKQMLGTGCKPDPILRTVLLKIAKSHEQTEEIHELLG 528



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 158/352 (44%), Gaps = 36/352 (10%)

Query: 198 ILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLRE-QNTQLYFKVAELVLSEESFQTN 256
           +L +EK  +P  +L ++      SR   +  L R ++ Q  ++  K  E ++ +  +  N
Sbjct: 94  MLEVEKSPEPLAILKKYAGDGNISRESVVGTLTRFKQMQAWKIIIKFTEWLMEQGWYNFN 153

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
            +DY  ++ A+ K+  ++  E I ++M E G+  +I   T+ +  Y +  + D+A+  F+
Sbjct: 154 QKDYFLVLLAYCKDGQVDKTEGIFQRMAELGVAANIEMYTLQIEGYGRRRSFDKAEAVFQ 213

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQ------------------PKLGMSLVDMMI-TSG 357
            L + G  P  + Y +M+ +Y  AG+                   K    + ++MI T G
Sbjct: 214 RLLTTGPSPTAQTYQTMMKSYSEAGRLDDVQRIFKLVTDSPSPTVKPDARMYNLMIHTYG 273

Query: 358 ----IERSEEIYLALLR-----------SFAQCGDV-RGAGQITNIMRIEEFQPTLESCT 401
               +E++  +Y ++ R           S   C    + A  +   ++  +  P + S T
Sbjct: 274 KQGKVEQAMSVYQSMKRERVALTIVTFNSLLACQKTWKDAEDVFRKLQAAKLDPDVFSYT 333

Query: 402 LLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD 461
            LV AY +A   + A + FD MI  G +P      ++I AY K    + A  +L +++++
Sbjct: 334 ALVNAYAKARRAECAHAAFDDMIAAGIRPTQVAYNALINAYAKCKDPEGARAVLKQMKQN 393

Query: 462 GFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
           G  P   +YT L+     + L+ +AEQ + ++ E    P  +    L   YA
Sbjct: 394 GCTPTVESYTSLISAYVSVNLMAKAEQTVLRMKEADLQPNLQTFCILMTGYA 445



 Score = 40.0 bits (92), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 4/133 (3%)

Query: 198 ILSLEKEEDPSPLLAEWKELLQ----PSRIDWINLLDRLREQNTQLYFKVAELVLSEESF 253
           I +  K +DP    A  K++ Q    P+   + +L+      N     +   L + E   
Sbjct: 371 INAYAKCKDPEGARAVLKQMKQNGCTPTVESYTSLISAYVSVNLMAKAEQTVLRMKEADL 430

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           Q N++ +  L+  +A  N L++  R  + M   G+ P+    TVLV+ Y    + D A  
Sbjct: 431 QPNLQTFCILMTGYANGNKLDNMMRSFETMKLAGLEPNRHVYTVLVNAYGSNDDFDSAII 490

Query: 314 AFESLRSHGFQPD 326
            ++ +   G +PD
Sbjct: 491 WYKQMLGTGCKPD 503


>gi|326527817|dbj|BAJ88981.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 491

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 123/278 (44%), Gaps = 2/278 (0%)

Query: 235 QNTQLYFKVAELVL--SEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDI 292
           +++ ++ K  +L++   E   + +V+ Y+ LID   K   L DA ++ +KM   GI PDI
Sbjct: 203 RDSGMWKKATDLIMEMQEVGVELDVKIYNGLIDTFGKYGQLADARKMFEKMRGQGIKPDI 262

Query: 293 VTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDM 352
            T   L+  + + GN+ RA     +++  G  PD K++ ++I      G+      L D 
Sbjct: 263 ETWNALIRWHCRVGNMKRALRFLAAMQEEGMYPDPKIFITIINKLGEQGKWDELKELFDK 322

Query: 353 MITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGD 412
           M   G + S  IY  L+  + Q G  R A +    ++ E  Q +     +L  AY Q G 
Sbjct: 323 MRNRGFKESGAIYAVLVDIYGQYGHFRDAQECVAALKAENLQLSPSIFCVLANAYAQQGL 382

Query: 413 PDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTV 472
            +Q  S    M   G +P+      +I A+       +A  +   ++  G  P   TYT 
Sbjct: 383 CEQTVSVLQLMEAEGIEPNLVMLNLLINAFSTAGRHLEAQAVFQHIKDSGMSPDVVTYTT 442

Query: 473 LVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCD 510
           L+    R++   +  ++  ++   G  P  K +  L D
Sbjct: 443 LMKAFMRVKRYEKVSEVYSEMERAGCTPDRKAREMLHD 480



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 130/293 (44%), Gaps = 2/293 (0%)

Query: 246 LVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKA 305
           L ++++    N R Y  L+DA+A+   LED+  +L +M   GI  D    + LV +Y  +
Sbjct: 146 LQMADDGVARNRRTYMLLLDAYARAGRLEDSWWVLGEMKRWGIRLDTAGYSTLVRLYRDS 205

Query: 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
           G   +A +    ++  G + D K+YN +I  +   GQ      + + M   GI+   E +
Sbjct: 206 GMWKKATDLIMEMQEVGVELDVKIYNGLIDTFGKYGQLADARKMFEKMRGQGIKPDIETW 265

Query: 366 LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
            AL+R   + G+++ A +    M+ E   P  +    ++   G+ G  D+ +  FD M  
Sbjct: 266 NALIRWHCRVGNMKRALRFLAAMQEEGMYPDPKIFITIINKLGEQGKWDELKELFDKMRN 325

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
            G K      A ++  YG+      A   +  L+ +  +  P+ + VL +   +  L  +
Sbjct: 326 RGFKESGAIYAVLVDIYGQYGHFRDAQECVAALKAENLQLSPSIFCVLANAYAQQGLCEQ 385

Query: 486 AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
              +L  +   G  P   +   L + ++ AG   +A QA+ F   K   M PD
Sbjct: 386 TVSVLQLMEAEGIEPNLVMLNLLINAFSTAGRHLEA-QAV-FQHIKDSGMSPD 436



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/320 (21%), Positives = 128/320 (40%), Gaps = 36/320 (11%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y + I  HA  + L  + ++L  M   G+ P       L+   ++AG    A+     +R
Sbjct: 56  YDRDIQPHAGSD-LARSLQLLADMQAAGMRPSAAAYARLIRALARAGRALEAEALLLEMR 114

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +PD   YN+++   +     +L   L+  M   G+ R+   Y+             
Sbjct: 115 HLGLRPDAAHYNALLEGLLARAHLRLADRLLLQMADDGVARNRRTYM------------- 161

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
                                 LL++AY +AG  + +      M R G + D    ++++
Sbjct: 162 ----------------------LLLDAYARAGRLEDSWWVLGEMKRWGIRLDTAGYSTLV 199

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             Y    +  KA +L++E+++ G E     Y  L+D  G+   + +A ++  K+   G  
Sbjct: 200 RLYRDSGMWKKATDLIMEMQEVGVELDVKIYNGLIDTFGKYGQLADARKMFEKMRGQGIK 259

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P  +   +L   + R G  K+AL+ L  ++ +     P  F  IIN L   G   + + +
Sbjct: 260 PDIETWNALIRWHCRVGNMKRALRFLAAMQEEGMYPDPKIFITIINKLGEQGKWDELKEL 319

Query: 560 HGLMEAQGFAASERLKVALI 579
              M  +GF  S  +   L+
Sbjct: 320 FDKMRNRGFKESGAIYAVLV 339


>gi|414878623|tpg|DAA55754.1| TPA: hypothetical protein ZEAMMB73_281441 [Zea mays]
          Length = 891

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 149/354 (42%), Gaps = 18/354 (5%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +S+E        Y+ +ID   KE  L++AE++L+    +G  PD+ + + L+H + K GN
Sbjct: 200 ISQERVPIEAMAYNMVIDGLCKEMKLKEAEKVLEIKTRHGSAPDLYSYSYLIHSHCKMGN 259

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS-------GIER 360
           L++A    E + SHG +      N  I+AY+     KLGM  V  +I         G+  
Sbjct: 260 LEKAWYHVEDMVSHGIE-----INCYIVAYLLQCLRKLGM--VSEVIVHFQKFRDLGVHL 312

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
              +Y   + ++ + G++  A ++ N M      P     T L+  Y   G+ + A   F
Sbjct: 313 DGVLYNIAMDAYCKLGNMNEAVKLLNEMMAGSLVPDKIHYTCLINGYCLKGETENAWQVF 372

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
           + M++   KPD      + + Y +  L+ K  ++L  +   G EP   TY + +    R 
Sbjct: 373 EEMLKANIKPDVVTYNILASGYSRNGLVMKVFDILEHMMDQGLEPNSLTYGIAIAGFCRG 432

Query: 481 QLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD-- 538
             ++EAE L   + E G      +  S+   Y  +G    A     FL   K+    D  
Sbjct: 433 GNLSEAEVLFNIVEERGIDNINVLYGSMVCGYLHSGWTDHAYML--FLRVAKQGNMVDRL 490

Query: 539 DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQPTR 592
              ++INGL     + +A  V  +M  +           LIS+    R     R
Sbjct: 491 SCSKLINGLCRDEKVGEASTVCKMMLEKNVVPDVISYSKLISAYCQTRDMHNAR 544



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 98/225 (43%), Gaps = 25/225 (11%)

Query: 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320
           SKLI+   ++  + +A  + K M E  +VPD+++ + L+  Y +  ++  A+  F  +  
Sbjct: 493 SKLINGLCRDEKVGEASTVCKMMLEKNVVPDVISYSKLISAYCQTRDMHNARLWFHDMVE 552

Query: 321 HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL----------- 369
            G   D  VY  ++  Y   G+ +    L   MI  GI+     Y  LL           
Sbjct: 553 RGLS-DVIVYTVLMNGYCKVGRLQEACELFVQMINLGIKPDVVAYTVLLDGHLKETLQQG 611

Query: 370 --------RSFAQCGDVRGAGQI-TNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
                   R+F     +R   ++  N M+  E +P +   T+L++   +A   ++AR  F
Sbjct: 612 WQGIAKERRTFF----LRTKHKVLLNSMKDMEIEPDVTCYTVLIDGRCKAEYLEEARGLF 667

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
           D M+  G  PD     ++I  Y  +  + KA +L  E+   G +P
Sbjct: 668 DEMLAKGLIPDVHTYTALINGYCSQGEIAKAEDLFQEMIAKGMKP 712



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 85/387 (21%), Positives = 156/387 (40%), Gaps = 58/387 (14%)

Query: 218 LQPSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L P +I +  L++    +  T+  ++V E +L + + + +V  Y+ L   +++   +   
Sbjct: 345 LVPDKIHYTCLINGYCLKGETENAWQVFEEML-KANIKPDVVTYNILASGYSRNGLVMKV 403

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
             IL+ M + G+ P+ +T  + +  + + GNL  A+  F  +   G      +Y SM+  
Sbjct: 404 FDILEHMMDQGLEPNSLTYGIAIAGFCRGGNLSEAEVLFNIVEERGIDNINVLYGSMVCG 463

Query: 337 YVNAGQPKLGM----------SLVDMM----ITSGIERSEEI------------------ 364
           Y+++G                ++VD +    + +G+ R E++                  
Sbjct: 464 YLHSGWTDHAYMLFLRVAKQGNMVDRLSCSKLINGLCRDEKVGEASTVCKMMLEKNVVPD 523

Query: 365 ---YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421
              Y  L+ ++ Q  D+  A    + M +E     +   T+L+  Y + G   +A   F 
Sbjct: 524 VISYSKLISAYCQTRDMHNARLWFHDM-VERGLSDVIVYTVLMNGYCKVGRLQEACELFV 582

Query: 422 YMIRLGHKPDDRCTASMIAAYGKKNL---------------LDKALNLLLELEKDG-FEP 465
            MI LG KPD      ++  + K+ L               L     +LL   KD   EP
Sbjct: 583 QMINLGIKPDVVAYTVLLDGHLKETLQQGWQGIAKERRTFFLRTKHKVLLNSMKDMEIEP 642

Query: 466 GPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
               YTVL+D   + + + EA  L  ++   G  P      +L + Y   G   KA    
Sbjct: 643 DVTCYTVLIDGRCKAEYLEEARGLFDEMLAKGLIPDVHTYTALINGYCSQGEIAKAEDL- 701

Query: 526 GFLEAKKEQMGPDDFE--RIINGLLAG 550
            F E   + M PD +   R+I   ++G
Sbjct: 702 -FQEMIAKGMKPDIWSMMRVIGVPMSG 727



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 62/318 (19%), Positives = 123/318 (38%), Gaps = 15/318 (4%)

Query: 187 ITGKCKLI----TDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFK 242
           I G CK +     +K+L ++     +P L  +  L+  S     NL         + ++ 
Sbjct: 216 IDGLCKEMKLKEAEKVLEIKTRHGSAPDLYSYSYLIH-SHCKMGNL--------EKAWYH 266

Query: 243 VAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMY 302
           V ++V      + N    + L+    K   + +     +K  + G+  D V   + +  Y
Sbjct: 267 VEDMV--SHGIEINCYIVAYLLQCLRKLGMVSEVIVHFQKFRDLGVHLDGVLYNIAMDAY 324

Query: 303 SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE 362
            K GN++ A +    + +    PDK  Y  +I  Y   G+ +    + + M+ + I+   
Sbjct: 325 CKLGNMNEAVKLLNEMMAGSLVPDKIHYTCLINGYCLKGETENAWQVFEEMLKANIKPDV 384

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
             Y  L   +++ G V     I   M  +  +P   +  + +  + + G+  +A   F+ 
Sbjct: 385 VTYNILASGYSRNGLVMKVFDILEHMMDQGLEPNSLTYGIAIAGFCRGGNLSEAEVLFNI 444

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
           +   G    +    SM+  Y      D A  L L + K G      + + L++ L R + 
Sbjct: 445 VEERGIDNINVLYGSMVCGYLHSGWTDHAYMLFLRVAKQGNMVDRLSCSKLINGLCRDEK 504

Query: 483 INEAEQLLGKISELGEAP 500
           + EA  +   + E    P
Sbjct: 505 VGEASTVCKMMLEKNVVP 522


>gi|410109939|gb|AFV61049.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rehmannii]
          Length = 420

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 122/268 (45%), Gaps = 8/268 (2%)

Query: 211 LAEWKELLQPSRIDWINLLD---RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAH 267
           + +W   L+PS + +  L++   RL + +     K A   +     Q +V  YS LI+  
Sbjct: 157 ITKWG--LRPSVVSYNTLMNGYIRLGDLDEGFRLKSA---MRASGVQPDVYTYSVLINGL 211

Query: 268 AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK 327
            KE+ ++DA  +  +M   G+VP+ VT T L+  + K G +D A E ++ + S    PD 
Sbjct: 212 CKESXMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQXLLPDJ 271

Query: 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNI 387
             YN+++      G       L+D M   G++  +  Y  L+    + GD+  A +    
Sbjct: 272 ITYNTLVYGLCKKGDLNQAHGLIDEMXXKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKR 331

Query: 388 MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447
           M  E  +    + T L+    Q G    A      M+ +G KPD      +I  + KK  
Sbjct: 332 MIQENIRLDDVAYTALISGLCQEGRSXDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGD 391

Query: 448 LDKALNLLLELEKDGFEPGPATYTVLVD 475
           + K   LL E++++G  P   TY VL++
Sbjct: 392 VWKGSKLLKEMQRNGHVPXVVTYNVLMN 419



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 65/313 (20%), Positives = 143/313 (45%), Gaps = 5/313 (1%)

Query: 191 CKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELV--- 247
           C+ + + ++ L   +       E  E   P+ + + N+L     ++  +  +VA LV   
Sbjct: 99  CRKVLEHLMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDI--RVAPLVFDA 156

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +++   + +V  Y+ L++ + +   L++  R+   M  +G+ PD+ T +VL++   K   
Sbjct: 157 ITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMRASGVQPDVYTYSVLINGLCKESX 216

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D A E F+ +   G  P+   + ++I  +   G+  L M +   M++  +      Y  
Sbjct: 217 MDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQXLLPDJITYNT 276

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    + GD+  A  + + M  +  +P   + T L++   + GD D A  +   MI+  
Sbjct: 277 LVYGLCKKGDLNQAHGLIDEMXXKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQEN 336

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            + DD    ++I+   ++     A  +L E+   G +P   TYT++++   +   + +  
Sbjct: 337 IRLDDVAYTALISGLCQEGRSXDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGS 396

Query: 488 QLLGKISELGEAP 500
           +LL ++   G  P
Sbjct: 397 KLLKEMQRNGHVP 409



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 57/267 (21%), Positives = 110/267 (41%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E  +  ++  ++ L+    K+  +  A  +   + + G+ P +V+   L++ Y + G+LD
Sbjct: 124 ECGYPASLYFFNILMHRFCKDGDIRVAPLVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 183

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
                  ++R+ G QPD   Y+ +I              L D M+  G+  +   +  L+
Sbjct: 184 EGFRLKSAMRASGVQPDVYTYSVLINGLCKESXMDDANELFDEMLVKGLVPNXVTFTTLI 243

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               + G V  A +I   M  +   P J +   LV    + GD +QA    D M   G K
Sbjct: 244 DGHCKNGRVDLAMEIYKQMLSQXLLPDJITYNTLVYGLCKKGDLNQAHGLIDEMXXKGLK 303

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     ++I    K+  LD A      + ++        YT L+  L +     +AE++
Sbjct: 304 PDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSXDAEKM 363

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAG 516
           L ++  +G  P       + + + + G
Sbjct: 364 LREMLSVGLKPDTGTYTMIINEFCKKG 390


>gi|357491817|ref|XP_003616196.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355517531|gb|AES99154.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 981

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 150/363 (41%), Gaps = 46/363 (12%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LID + K   L+DA  +   M ++G+  D  T   L+ +    GNL  A+   + + 
Sbjct: 296 YNTLIDLYGKAGRLKDAADVFADMMKSGVAMDTCTFNTLIFISGSHGNLLEAESLLDKME 355

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G   + + YN  +  Y  AG     +S    +   G+      Y ALL +      V+
Sbjct: 356 ERGISSNTRTYNIFLSLYATAGSIDAALSYYRRIREVGLFPDTVTYRALLGALCTENMVQ 415

Query: 380 GAGQITNIMRIEEFQPTLESCTL--LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA- 436
               + + M  E+   +L++ +L  +V+ Y   GD D+A    D + + G  P   C A 
Sbjct: 416 AVEGVIDEM--EKNSVSLDALSLSGIVKMYINEGDVDKAN---DLLQKYGEPPSFICAAI 470

Query: 437 ----------------------------------SMIAAYGKKNLLDKALNLLLELEKDG 462
                                              MI AYGK N  DKA+ L  E++  G
Sbjct: 471 IDAFAEKGFWAEAENIFYRKRDKARQARDILEFNVMIKAYGKANHYDKAVLLFEEMKYQG 530

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522
             P  +TY  ++  L    L+++A  L  ++ E+G  P  +   ++   YAR G    A+
Sbjct: 531 ISPADSTYNSIIQMLSGADLVDQARDLTVEMQEMGFKPHCQTFSAVIGCYARLGQLSDAV 590

Query: 523 QALGFLEAKKEQMGPDD--FERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
             + + E     + P++  +  +ING    G L +A +   LM+  G +A+  +   L+ 
Sbjct: 591 --IVYQEMISAGVKPNETVYGALINGFAEHGRLDEALQYFHLMQESGLSANLVVLTTLMK 648

Query: 581 SQT 583
           S +
Sbjct: 649 SYS 651



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 118/231 (51%), Gaps = 1/231 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           ++ +++ +I A+ K N  + A  + ++M   GI P   T   ++ M S A  +D+A++  
Sbjct: 499 DILEFNVMIKAYGKANHYDKAVLLFEEMKYQGISPADSTYNSIIQMLSGADLVDQARDLT 558

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             ++  GF+P  + ++++I  Y   GQ    + +   MI++G++ +E +Y AL+  FA+ 
Sbjct: 559 VEMQEMGFKPHCQTFSAVIGCYARLGQLSDAVIVYQEMISAGVKPNETVYGALINGFAEH 618

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A Q  ++M+       L   T L+++Y +AGD    +S +  M  +    D    
Sbjct: 619 GRLDEALQYFHLMQESGLSANLVVLTTLMKSYSKAGDLKGVKSIYKQMQNMEGVLDLAAR 678

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           +SMI A+ +  L+ +A  L  E  K+  +    +Y +++     + +I+EA
Sbjct: 679 SSMITAFAELGLVSEA-KLTFEKFKETGQADSTSYGIMMYVYKDIGMIDEA 728



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 77/377 (20%), Positives = 134/377 (35%), Gaps = 56/377 (14%)

Query: 162 DPKWTEVAEKIHERGEMILPEEPKPITGKCKLITDKILSL-EKEEDPSPLLAEWKELLQP 220
           +P+W            + LP            + D +L L E   D    L  + E++ P
Sbjct: 38  NPRWVSPPLTCFRSKTLPLPTNVSSTENDSDNVLDSVLKLLETSNDVEDTLDSFGEIISP 97

Query: 221 SRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNV----------------------- 257
             I  I  L +LR  N ++  +V +   S+ ++  NV                       
Sbjct: 98  KEITMI--LKKLR--NWEIVVRVFKWFRSQNNYVHNVIHYNVVLRTLGRAKQWDQLRLCW 153

Query: 258 ------------RDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKA 305
                         YS L+  + K    ++A   +K M   G  PD VT + +V +    
Sbjct: 154 IEMAKNNVLPTNNTYSMLVHCYGKGGLGKEALLWVKHMMVRGFFPDEVTMSTVVKVLKDV 213

Query: 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
           G  DRA   +++        D   ++S   A  +  +  + +S    + T          
Sbjct: 214 GEFDRADRFYKNWCGGKVDLDDLDFDSSDCAIADGSRSSVPISFKQFLST---------- 263

Query: 366 LALLRSFAQCGDVRGAGQITNIM-RIEEFQPTLESC-TLLVEAYGQAGDPDQARSNFDYM 423
                 F   G +R +  ++  M  I   +P L +    L++ YG+AG    A   F  M
Sbjct: 264 ----ELFKTGGGIRDSNMLSMDMEEIAPLKPRLSTTYNTLIDLYGKAGRLKDAADVFADM 319

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483
           ++ G   D     ++I   G    L +A +LL ++E+ G      TY + +        I
Sbjct: 320 MKSGVAMDTCTFNTLIFISGSHGNLLEAESLLDKMEERGISSNTRTYNIFLSLYATAGSI 379

Query: 484 NEAEQLLGKISELGEAP 500
           + A     +I E+G  P
Sbjct: 380 DAALSYYRRIREVGLFP 396



 Score = 47.0 bits (110), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 62/287 (21%), Positives = 116/287 (40%), Gaps = 40/287 (13%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++ E     N+   + L+ +++K   L+  + I K+M     V D+   + ++  +++ G
Sbjct: 630 LMQESGLSANLVVLTTLMKSYSKAGDLKGVKSIYKQMQNMEGVLDLAARSSMITAFAELG 689

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY- 365
            +  AK  FE  +  G Q D   Y  M+  Y + G     + + + M  SG+ R    Y 
Sbjct: 690 LVSEAKLTFEKFKETG-QADSTSYGIMMYVYKDIGMIDEAIKIAEEMKISGLLRDCVSYN 748

Query: 366 -----LALLRSFAQCGDVRGAGQIT--------------NIMRIEEFQPTLESCTLLVEA 406
                 A+ R F +CG++     ++               I++  EF   +E+   L   
Sbjct: 749 RVLTCYAINRQFHKCGELLYEMIVSKKLLPDDGTLIVLFTILKKAEFP--VEAAEQLELC 806

Query: 407 YGQAGDPDQARSNFDYMIRLGHKPD-------------DRCTASMIA--AYGKKNLLDKA 451
           Y Q G P  +++ +  +  L                  D   A  +A  AY     ++KA
Sbjct: 807 Y-QEGKPYASQATYTALYSLLGMHTLALKFAQTVLENLDSSAAYNVAIYAYASAGDVEKA 865

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           LN+ +++     EP   TY  LV   G+  ++ E  + +  + E GE
Sbjct: 866 LNIHMKMRDKHVEPDIVTYINLVGCYGKAGMV-EGVKKIHSLFEYGE 911


>gi|356508608|ref|XP_003523047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Glycine max]
          Length = 879

 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 103/215 (47%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  LID HAK   L+ A  + ++M E G+ PD  T +V+++   K+GNL  A   F  + 
Sbjct: 456 YCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDTFTYSVMINCLGKSGNLSAAHRLFCEMV 515

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P+   YN +I     A   +  + L   M  +G +  +  Y  ++     CG + 
Sbjct: 516 DQGCVPNIVTYNILIALQAKARNYQTALELYRDMQNAGFKPDKVTYSIVMEVLGHCGYLE 575

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  +   MR   + P      LLV+ +G+AG+ ++A   +  M+R G  P+     S++
Sbjct: 576 EAEAVFFEMRQNHWVPDEPVYGLLVDLWGKAGNVEKAWEWYHTMLRAGLLPNVPTCNSLL 635

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
           +A+ + + L  A NLL  +   G  P   TYT+L+
Sbjct: 636 SAFLRVHRLPDAYNLLQNMVTLGLNPSLQTYTLLL 670



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/265 (20%), Positives = 114/265 (43%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           +  F  +   Y+ ++    +        ++L++M ++G  P++VT   L+H Y +A  L 
Sbjct: 376 QPGFWHDGHTYTTMVGILGRAREFGAINKLLEQMVKDGCQPNVVTYNRLIHSYGRANYLR 435

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A   F  ++  G +PD+  Y ++I  +  AG   + MS+ + M   G+      Y  ++
Sbjct: 436 EALNVFNQMQEMGCEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDTFTYSVMI 495

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               + G++  A ++   M  +   P + +  +L+    +A +   A   +  M   G K
Sbjct: 496 NCLGKSGNLSAAHRLFCEMVDQGCVPNIVTYNILIALQAKARNYQTALELYRDMQNAGFK 555

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD    + ++   G    L++A  +  E+ ++ + P    Y +LVD  G+   + +A + 
Sbjct: 556 PDKVTYSIVMEVLGHCGYLEEAEAVFFEMRQNHWVPDEPVYGLLVDLWGKAGNVEKAWEW 615

Query: 490 LGKISELGEAPPFKIQVSLCDMYAR 514
              +   G  P      SL   + R
Sbjct: 616 YHTMLRAGLLPNVPTCNSLLSAFLR 640



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 125/289 (43%), Gaps = 52/289 (17%)

Query: 219 QPSRIDWINLLD-----RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCL 273
           +P R+ +  L+D        +    +Y ++ E+ LS ++F      YS +I+   K   L
Sbjct: 450 EPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDTFT-----YSVMINCLGKSGNL 504

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
             A R+  +M + G VP+IVT  +L+ + +KA N   A E +  +++ GF+PDK  Y+ +
Sbjct: 505 SAAHRLFCEMVDQGCVPNIVTYNILIALQAKARNYQTALELYRDMQNAGFKPDKVTYSIV 564

Query: 334 IMAYVNAG--------------------QPKLGMSLVDMMITSG-IERSEEIYLALLRS- 371
           +    + G                    +P  G+ LVD+   +G +E++ E Y  +LR+ 
Sbjct: 565 MEVLGHCGYLEEAEAVFFEMRQNHWVPDEPVYGL-LVDLWGKAGNVEKAWEWYHTMLRAG 623

Query: 372 --------------FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
                         F +   +  A  +   M      P+L++ TLL+    +A  P    
Sbjct: 624 LLPNVPTCNSLLSAFLRVHRLPDAYNLLQNMVTLGLNPSLQTYTLLLSCCTEAQSPYDMG 683

Query: 418 SNFDYMIRLGHKPDDRCTASMIAA----YGKKNLLDKALNLLLELEKDG 462
              + M   GH P      SM AA       ++ + K L+L+   +++G
Sbjct: 684 FCCELMAVSGH-PAHAFLQSMPAAGPDGQNVRDHVSKFLDLMHSEDREG 731



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 84/168 (50%), Gaps = 4/168 (2%)

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
           QP + +   L+ +YG+A    +A + F+ M  +G +PD     ++I  + K   LD A++
Sbjct: 415 QPNVVTYNRLIHSYGRANYLREALNVFNQMQEMGCEPDRVTYCTLIDIHAKAGFLDVAMS 474

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
           +   +++ G  P   TY+V+++ LG+   ++ A +L  ++ + G  P       L  + A
Sbjct: 475 MYERMQEVGLSPDTFTYSVMINCLGKSGNLSAAHRLFCEMVDQGCVPNIVTYNILIALQA 534

Query: 514 RAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRV 559
           +A   + AL+   + + +     PD   +  ++  L   G+L++A+ V
Sbjct: 535 KARNYQTALEL--YRDMQNAGFKPDKVTYSIVMEVLGHCGYLEEAEAV 580



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 68/161 (42%), Gaps = 4/161 (2%)

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           D     +M+   G+         LL ++ KDG +P   TY  L+   GR   + EA  + 
Sbjct: 382 DGHTYTTMVGILGRAREFGAINKLLEQMVKDGCQPNVVTYNRLIHSYGRANYLREALNVF 441

Query: 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFER--IINGLL 548
            ++ E+G  P      +L D++A+AG    A+    +   ++  + PD F    +IN L 
Sbjct: 442 NQMQEMGCEPDRVTYCTLIDIHAKAGFLDVAMSM--YERMQEVGLSPDTFTYSVMINCLG 499

Query: 549 AGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQ 589
             G L  A R+   M  QG   +      LI+ Q   R  Q
Sbjct: 500 KSGNLSAAHRLFCEMVDQGCVPNIVTYNILIALQAKARNYQ 540


>gi|225456631|ref|XP_002266698.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74750
           [Vitis vinifera]
          Length = 875

 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 124/269 (46%), Gaps = 7/269 (2%)

Query: 210 LLAEW-KELLQPSRIDWINLLDRLREQNTQLYFKVAELV---LSEESFQTNVRDYSKLID 265
           LLAE  ++  QP+ + +  L+      N   Y   A  V   + E   Q +   Y  LID
Sbjct: 401 LLAEMVRDGCQPNVVTYNRLIHSYGRAN---YLNEAVSVFDRMQEAGCQPDRVTYCTLID 457

Query: 266 AHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQP 325
            HAK   L+ A  + +KM E  + PD  T +V+++   KAG+L  A + F  +   G  P
Sbjct: 458 IHAKAGFLDVALHMYQKMQEAHLSPDTFTYSVIINCLGKAGHLTSAHKLFCEMVDQGCVP 517

Query: 326 DKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQIT 385
           +   YN MI     A      + L   M  +G +  +  Y  ++     CG +  A  I 
Sbjct: 518 NLVTYNIMIALQAKARNYPTALELYRDMQNAGFQPDKVTYSIVMEVLGHCGHLEEAEAIF 577

Query: 386 NIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKK 445
             M+ + + P      LLV+ +G+ G+ +++   +  M+  G  P+     S+++A+ + 
Sbjct: 578 TEMKRKNWVPDEPVYGLLVDLWGKVGNVEKSWEWYQAMLNAGLCPNVPTCNSLLSAFLRV 637

Query: 446 NLLDKALNLLLELEKDGFEPGPATYTVLV 474
           + L  A NLL  + + G +P   TYT+L+
Sbjct: 638 HRLSDAYNLLQSMLRLGLQPSLQTYTLLL 666



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 124/278 (44%), Gaps = 4/278 (1%)

Query: 243 VAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMY 302
           +AE+V   +  Q NV  Y++LI ++ + N L +A  +  +M E G  PD VT   L+ ++
Sbjct: 402 LAEMV--RDGCQPNVVTYNRLIHSYGRANYLNEAVSVFDRMQEAGCQPDRVTYCTLIDIH 459

Query: 303 SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE 362
           +KAG LD A   ++ ++     PD   Y+ +I     AG       L   M+  G   + 
Sbjct: 460 AKAGFLDVALHMYQKMQEAHLSPDTFTYSVIINCLGKAGHLTSAHKLFCEMVDQGCVPNL 519

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
             Y  ++   A+  +   A ++   M+   FQP   + ++++E  G  G  ++A + F  
Sbjct: 520 VTYNIMIALQAKARNYPTALELYRDMQNAGFQPDKVTYSIVMEVLGHCGHLEEAEAIFTE 579

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
           M R    PD+     ++  +GK   ++K+      +   G  P   T   L+    R+  
Sbjct: 580 MKRKNWVPDEPVYGLLVDLWGKVGNVEKSWEWYQAMLNAGLCPNVPTCNSLLSAFLRVHR 639

Query: 483 INEAEQLLGKISELGEAPPFKIQVSL--CDMYARAGIE 518
           +++A  LL  +  LG  P  +    L  C   AR+  +
Sbjct: 640 LSDAYNLLQSMLRLGLQPSLQTYTLLLSCCTEARSSFD 677



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/272 (20%), Positives = 113/272 (41%), Gaps = 35/272 (12%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           +  F+ +   Y+ ++    +        ++L +M  +G  P++VT   L+H Y +A  L+
Sbjct: 372 QTGFKHDGHTYTTMVGILGRARQFGAINKLLAEMVRDGCQPNVVTYNRLIHSYGRANYLN 431

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A   F+ ++  G QPD+  Y ++I  +  AG   + + +   M        +E +L+  
Sbjct: 432 EAVSVFDRMQEAGCQPDRVTYCTLIDIHAKAGFLDVALHMYQKM--------QEAHLS-- 481

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
                                    P   + ++++   G+AG    A   F  M+  G  
Sbjct: 482 -------------------------PDTFTYSVIINCLGKAGHLTSAHKLFCEMVDQGCV 516

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           P+      MIA   K      AL L  +++  GF+P   TY+++++ LG    + EAE +
Sbjct: 517 PNLVTYNIMIALQAKARNYPTALELYRDMQNAGFQPDKVTYSIVMEVLGHCGHLEEAEAI 576

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKA 521
             ++      P   +   L D++ + G  +K+
Sbjct: 577 FTEMKRKNWVPDEPVYGLLVDLWGKVGNVEKS 608



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 89/211 (42%), Gaps = 17/211 (8%)

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPT----LESCTLLVEAY------GQAGDPDQARSN 419
           R F   G V     ++ I+R   + P     L +   L++AY       Q  D   A   
Sbjct: 308 RQFGSSGHV--VENVSRILRQLSWGPAAEEALRNLNCLMDAYQANQVLKQIQDHPVALGF 365

Query: 420 FDYMIR-LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLG 478
           F ++ R  G K D     +M+   G+         LL E+ +DG +P   TY  L+   G
Sbjct: 366 FYWLKRQTGFKHDGHTYTTMVGILGRARQFGAINKLLAEMVRDGCQPNVVTYNRLIHSYG 425

Query: 479 RLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
           R   +NEA  +  ++ E G  P      +L D++A+AG    AL    + + ++  + PD
Sbjct: 426 RANYLNEAVSVFDRMQEAGCQPDRVTYCTLIDIHAKAGFLDVALHM--YQKMQEAHLSPD 483

Query: 539 DFER--IINGLLAGGFLQDAQRVHGLMEAQG 567
            F    IIN L   G L  A ++   M  QG
Sbjct: 484 TFTYSVIINCLGKAGHLTSAHKLFCEMVDQG 514


>gi|357155105|ref|XP_003577009.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g13800-like [Brachypodium distachyon]
          Length = 821

 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 139/320 (43%), Gaps = 14/320 (4%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           E  Q     ++ ++D   KE  LE+ E++L+     G+ PDI   + L+  Y K GNL +
Sbjct: 289 EKVQVEAIAFNVVMDGLCKEMRLEEVEKLLENKVRQGLTPDIYGYSYLIRSYCKVGNLLK 348

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMS-----LVDMMITSGIERSEEIY 365
             + ++++ SHG +      N  IM+Y+     KLGM+            SG+     +Y
Sbjct: 349 VLDHYQAMVSHGLEA-----NCHIMSYLLQCFTKLGMASQVTEYFQKFRDSGLHIDGVLY 403

Query: 366 LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
              + ++ + G++  A ++   M      P     T L++ Y   GD   AR  F+ M++
Sbjct: 404 NIAMDAYCKLGNMDEAVKLLGEMMTVGLSPDRIHYTCLIKGYCLKGDIQNARQAFEEMLK 463

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
              KPD      + +   K+ L+ +  +L+  +E  G +P   TY V++D   R   ++E
Sbjct: 464 ANVKPDVVTYNILASGLSKRGLVMEVFDLIGHMEDRGLQPNSLTYGVVIDGFCRGDNLSE 523

Query: 486 AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF--ERI 543
           AE L   + E G      +  S+   Y   G    A   + FL   K+    D F   ++
Sbjct: 524 AEVLFNIVEEKGIDNIEVLYSSMVCGYLHKGWTDNAY--VLFLRVAKQGKLVDRFSCSKL 581

Query: 544 INGLLAGGFLQDAQRVHGLM 563
           I+ L   G  Q A  V   M
Sbjct: 582 ISDLCRDGNSQGASTVCSTM 601



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 99/423 (23%), Positives = 174/423 (41%), Gaps = 41/423 (9%)

Query: 196 DKILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLD----RLREQNTQLYFKVAELVLSE 250
           D    L   ++   LL E   + L P RI +  L+     +   QN +  F        E
Sbjct: 408 DAYCKLGNMDEAVKLLGEMMTVGLSPDRIHYTCLIKGYCLKGDIQNARQAF--------E 459

Query: 251 ESFQTNVR----DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           E  + NV+     Y+ L    +K   + +   ++  M + G+ P+ +T  V++  + +  
Sbjct: 460 EMLKANVKPDVVTYNILASGLSKRGLVMEVFDLIGHMEDRGLQPNSLTYGVVIDGFCRGD 519

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           NL  A+  F  +   G    + +Y+SM+  Y++ G       L   +   G         
Sbjct: 520 NLSEAEVLFNIVEEKGIDNIEVLYSSMVCGYLHKGWTDNAYVLFLRVAKQGKLVDRFSCS 579

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+    + G+ +GA  + + M  +   P L S + L+ AY Q GD   AR  F  M++ 
Sbjct: 580 KLISDLCRDGNSQGASTVCSTMLEKNDVPDLISYSKLISAYCQTGDMRNARLWFHDMVQR 639

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD----------W 476
           G   D      ++  Y K  L+ +A  L  ++   G +P    YTVL+D          W
Sbjct: 640 GLPVDVIVYTVLMNGYCKIGLMQEACELFAQMTSLGIKPDIIAYTVLLDGHLKEDLQRRW 699

Query: 477 LG----RLQLINEAEQ--LLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALG-FLE 529
            G    +  L+  A+Q  LL  + E+   P       L D   ++   +   QA G F E
Sbjct: 700 QGISRDKRSLLLRAKQNRLLSSMKEMEIEPDVPCYTVLIDGQCKSDYLE---QARGLFDE 756

Query: 530 AKKEQMGPDD--FERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTF-NR 586
             ++ + PD   +  +ING  + G +  A+ +   M  +G    + L  ++++ +   NR
Sbjct: 757 MLQKGLTPDHYAYTALINGYCSQGEVAKAEDLFQEMVDKGIKP-DVLTFSVLNRRVLRNR 815

Query: 587 QRQ 589
           Q Q
Sbjct: 816 QDQ 818



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 72/319 (22%), Positives = 131/319 (41%), Gaps = 23/319 (7%)

Query: 241 FKV-AELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLV 299
           FKV  E++  E   + +V  +S  I    +   ++ A  IL+++    +  + +   V++
Sbjct: 245 FKVWVEMI--EMGVKPDVHGHSSFIIGLCECGKIDLAYAILQEIIREKVQVEAIAFNVVM 302

Query: 300 HMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
               K   L+  ++  E+    G  PD   Y+ +I +Y   G     +     M++ G+E
Sbjct: 303 DGLCKEMRLEEVEKLLENKVRQGLTPDIYGYSYLIRSYCKVGNLLKVLDHYQAMVSHGLE 362

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLES--------CTLLVEAYGQAG 411
            +  I   LL+ F + G    A Q+T     E FQ   +S          + ++AY + G
Sbjct: 363 ANCHIMSYLLQCFTKLG---MASQVT-----EYFQKFRDSGLHIDGVLYNIAMDAYCKLG 414

Query: 412 DPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYT 471
           + D+A      M+ +G  PD      +I  Y  K  +  A     E+ K   +P   TY 
Sbjct: 415 NMDEAVKLLGEMMTVGLSPDRIHYTCLIKGYCLKGDIQNARQAFEEMLKANVKPDVVTYN 474

Query: 472 VLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK 531
           +L   L +  L+ E   L+G + + G  P       + D + R     +A      +E K
Sbjct: 475 ILASGLSKRGLVMEVFDLIGHMEDRGLQPNSLTYGVVIDGFCRGDNLSEAEVLFNIVEEK 534

Query: 532 KEQMGPDDFERIINGLLAG 550
               G D+ E + + ++ G
Sbjct: 535 ----GIDNIEVLYSSMVCG 549


>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 791

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 117/253 (46%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ +I+   KE   + A     +M +  I PD+VT + ++    K   +D+A E  
Sbjct: 195 DVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVL 254

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
            ++  +G  P+   YNS++  Y ++ QPK  +  +  M + G+E     Y +L+    + 
Sbjct: 255 TTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKN 314

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G    A +I + M     +P + +   L++ Y   G   +  +  D M+R G  PD    
Sbjct: 315 GRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVF 374

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +I AY K+  +D+A+ +  ++ + G  P   TY  ++  L +   +++A     ++ +
Sbjct: 375 NILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMID 434

Query: 496 LGEAPPFKIQVSL 508
            G  P   +  SL
Sbjct: 435 EGLTPNIIVYTSL 447



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 62/285 (21%), Positives = 128/285 (44%), Gaps = 4/285 (1%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           ++P  + + +L+D L +       +     +++   + ++  Y  L+  +A +  L +  
Sbjct: 297 VEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMH 356

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
            +L  M  NGI PD     +L+  Y+K   +D A   F  +R HG  P+   Y ++I   
Sbjct: 357 ALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGIL 416

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
             +G     M   + MI  G+  +  +Y +L+ S         A ++  I+ + +    L
Sbjct: 417 CKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEEL--ILEMLDRGICL 474

Query: 398 ESCTL--LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
            +     ++ ++ + G   ++   FD M+R+G KP+    +++I  Y     +D+A  LL
Sbjct: 475 NTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLL 534

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
             +   G +P   TY  L++   R+  +++A  L  ++   G +P
Sbjct: 535 SSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSP 579



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 103/235 (43%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  YS +I A  K   ++ A  +L  M +NG++P+ +T   ++H Y  +     A    
Sbjct: 230 DVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFL 289

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + +RS G +PD   YNS++      G+      + D M   G+E     Y  LL+ +A  
Sbjct: 290 KKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATK 349

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +     + ++M      P      +L+ AY +    D+A   F  M + G  P+    
Sbjct: 350 GALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTY 409

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
            ++I    K   +D A+    ++  +G  P    YT L+  L      ++AE+L+
Sbjct: 410 GAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELI 464



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 126/284 (44%), Gaps = 4/284 (1%)

Query: 216 ELLQPSRIDWINLLDRLREQNTQLYFKVAELVLS--EESFQTNVRDYSKLIDAHAKENCL 273
           E L P+ I + +L+  L   +   + K  EL+L   +     N   ++ +I +H KE  +
Sbjct: 435 EGLTPNIIVYTSLIHSLCIFDK--WDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRV 492

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
            ++E++   M   G+ P+++T + L+  Y  AG +D A +   S+ S G +PD   YN++
Sbjct: 493 IESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTL 552

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           I  Y    +    ++L   M++SG+  +   Y  +L+          A ++   +     
Sbjct: 553 INGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGT 612

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
           Q  L +  +++    +    D+A   F  +     + + R    MI A  K    D+A +
Sbjct: 613 QLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKD 672

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           L +    +G  P   TY ++ + +    L+ E +QL   + + G
Sbjct: 673 LFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFFSMEDNG 716



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/311 (21%), Positives = 119/311 (38%), Gaps = 38/311 (12%)

Query: 244 AELVLS---EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
           A LV S   +     NV  Y  +I    K   ++DA    ++M + G+ P+I+  T L+H
Sbjct: 390 AMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIH 449

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
                   D+A+E    +   G   +   +NS+I ++   G+      L D+M+  G+  
Sbjct: 450 SLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGV-- 507

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
                                            +P + + + L++ Y  AG  D+A    
Sbjct: 508 ---------------------------------KPNVITYSTLIDGYCLAGKMDEATKLL 534

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
             M  +G KPD     ++I  Y + + +D AL L  E+   G  P   TY +++  L   
Sbjct: 535 SSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHT 594

Query: 481 QLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF 540
           +    A++L   I++ G          +     +  +  +AL+    L     Q+    F
Sbjct: 595 RRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTF 654

Query: 541 ERIINGLLAGG 551
             +I  LL  G
Sbjct: 655 NIMIGALLKVG 665



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 120/314 (38%), Gaps = 36/314 (11%)

Query: 288 IVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGM 347
           + P + T  +L+    +AG LD    A  ++   GF+ +   +  ++       +    M
Sbjct: 83  VTPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAM 142

Query: 348 SLV---------------DMMITSGI---ERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389
            +V                 ++  G+    RS+E  L LL   A   D RG G       
Sbjct: 143 DIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEA-LELLHMMA---DDRGGGS------ 192

Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD 449
                P + S T ++  + + GD D+A S +  M+     PD    +S+IAA  K   +D
Sbjct: 193 ----APDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMD 248

Query: 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLC 509
           KA+ +L  + K+G  P   TY  ++      +   EA   L K+   G  P      SL 
Sbjct: 249 KAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLM 308

Query: 510 DMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQG 567
           D   + G   +A +   F    K  + PD   +  ++ G    G L +   +  LM   G
Sbjct: 309 DYLCKNGRSTEARKI--FDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNG 366

Query: 568 FAASERLKVALISS 581
                 +   LI +
Sbjct: 367 IHPDHHVFNILICA 380



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 71/339 (20%), Positives = 128/339 (37%), Gaps = 42/339 (12%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNEN---GIVPDIVTSTVLVHMYSK 304
           ++E S   +V   + L+     EN  ++A  +L  M ++   G  PD+V+ T +++ + K
Sbjct: 149 MTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFK 208

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
            G+ D+A   +  +      PD   Y+S+I A          M ++  M+ +G+  +   
Sbjct: 209 EGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMT 268

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
           Y ++L  +      + A      MR +  +P + +   L++   + G   +AR  FD M 
Sbjct: 269 YNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSM- 327

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
                                              K G EP  ATY  L+        + 
Sbjct: 328 ----------------------------------TKRGLEPDIATYCTLLQGYATKGALV 353

Query: 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFER 542
           E   LL  +   G  P   +   L   YA+   EK     L F + ++  + P+   +  
Sbjct: 354 EMHALLDLMVRNGIHPDHHVFNILICAYAKQ--EKVDEAMLVFSKMRQHGLNPNVVTYGA 411

Query: 543 IINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
           +I  L   G + DA      M  +G   +  +  +LI S
Sbjct: 412 VIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHS 450



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/240 (21%), Positives = 94/240 (39%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  YS LID +     +++A ++L  M   G+ PD VT   L++ Y +   +D A   F
Sbjct: 510 NVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALF 569

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + + S G  P+   YN ++    +  +      L   +  SG +     Y  +L    + 
Sbjct: 570 KEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKN 629

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
                A ++   + + + Q    +  +++ A  + G  D+A+  F      G  P+    
Sbjct: 630 NLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFVAFSSNGLVPNYWTY 689

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             M      + LL++   L   +E +G          +V  L +   I  A   L  I E
Sbjct: 690 RLMAENIIGQGLLEELDQLFFSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDE 749


>gi|356524676|ref|XP_003530954.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g12700, mitochondrial-like
           [Glycine max]
          Length = 555

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 72/318 (22%), Positives = 143/318 (44%), Gaps = 22/318 (6%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  LI+   K     DA ++L+KM E+ + P+++T + ++    K   +  A   F  + 
Sbjct: 163 YGSLINGLCKNGQTRDALQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRLFSLVT 222

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           S G   D   YNS+I    + GQ +    L+ MM+   I   +  +  L+ +  + G + 
Sbjct: 223 SRGILVDVVAYNSLIHGCCSVGQWREATRLLTMMVRGNINPDDYTFNILVDALCKEGRIV 282

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  +  +M     +P + +   L+E +  + +  +AR  F+ M++ G +PD      +I
Sbjct: 283 EAQGVFAVMMKRGEKPDIVTYNALMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVLI 342

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             Y K +++D+A+ L  E+      P  ATY  L+D L +L  ++  ++L+ ++ + G++
Sbjct: 343 NGYCKIDMVDEAMVLFKEIRCKNLVPNLATYNSLIDGLCKLGRMSCVQELVDEMCDRGQS 402

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P         D + ++   +KA+                 F +I+ G+    ++ D    
Sbjct: 403 PDIVTYNIFLDAFCKSKPYEKAISL---------------FRQIVQGIWPDFYMYDVI-- 445

Query: 560 HGLMEAQGFAASERLKVA 577
                 + F   E+LK+A
Sbjct: 446 -----VENFCKGEKLKIA 458



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 99/233 (42%), Gaps = 4/233 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           ++  Y+ L++     N + +A  +  +M + G+ PD++   VL++ Y K   +D A   F
Sbjct: 299 DIVTYNALMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLF 358

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + +R     P+   YNS+I      G+      LVD M   G       Y   L +F + 
Sbjct: 359 KEIRCKNLVPNLATYNSLIDGLCKLGRMSCVQELVDEMCDRGQSPDIVTYNIFLDAFCKS 418

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
                A  +   + ++   P      ++VE + +      A     +++  G  P+ R  
Sbjct: 419 KPYEKAISLFRQI-VQGIWPDFYMYDVIVENFCKGEKLKIAEEALQHLLIHGCCPNVRTY 477

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQ 488
             MI A  K    D+A+ LL +++ +   P   T+  ++   G LQ  NE ++
Sbjct: 478 TIMINALCKDCSFDEAMTLLSKMDDNDCPPDAVTFETII---GALQERNETDK 527



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/289 (21%), Positives = 118/289 (40%), Gaps = 4/289 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           + KL+ A  +      A  +  +++  GI P I T T+L++ Y    +L  A     ++ 
Sbjct: 58  FDKLLGAIVRMGHYPTAISLFSQLHSKGITPSIATLTILINCYCHQAHLSFAFSLLGTIL 117

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             GFQP+   +N++I  +   G     M+    ++  G    E  Y +L+    + G  R
Sbjct: 118 KMGFQPNMVTFNTLINGFCINGMVSKAMAFRLDLMAKGYPLDEFSYGSLINGLCKNGQTR 177

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A Q+   M  +  +P L + + +++   +      A   F  +   G   D     S+I
Sbjct: 178 DALQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRLFSLVTSRGILVDVVAYNSLI 237

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
                     +A  LL  + +    P   T+ +LVD L +   I EA+ +   + + GE 
Sbjct: 238 HGCCSVGQWREATRLLTMMVRGNINPDDYTFNILVDALCKEGRIVEAQGVFAVMMKRGEK 297

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIING 546
           P      +L + +  +    +A +   F    K  + PD  ++  +ING
Sbjct: 298 PDIVTYNALMEGFCLSNNVSEAREL--FNRMVKRGLEPDVLNYNVLING 344



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 107/253 (42%), Gaps = 7/253 (2%)

Query: 318 LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
           LR H   P   V++ ++ A V  G     +SL   + + GI  S      L+  +     
Sbjct: 47  LRKHP-PPPIFVFDKLLGAIVRMGHYPTAISLFSQLHSKGITPSIATLTILINCYCHQAH 105

Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS-NFDYMIRLGHKPDDRCTA 436
           +  A  +   +    FQP + +   L+  +   G   +A +   D M + G+  D+    
Sbjct: 106 LSFAFSLLGTILKMGFQPNMVTFNTLINGFCINGMVSKAMAFRLDLMAK-GYPLDEFSYG 164

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
           S+I    K      AL LL ++E+D   P   TY+ ++D L + +LI +A +L   ++  
Sbjct: 165 SLINGLCKNGQTRDALQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRLFSLVTSR 224

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQ 554
           G         SL       G  ++A + L  +   +  + PDD  F  +++ L   G + 
Sbjct: 225 GILVDVVAYNSLIHGCCSVGQWREATRLLTMM--VRGNINPDDYTFNILVDALCKEGRIV 282

Query: 555 DAQRVHGLMEAQG 567
           +AQ V  +M  +G
Sbjct: 283 EAQGVFAVMMKRG 295



 Score = 45.4 bits (106), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 5/166 (3%)

Query: 404 VEAYGQAGDP-----DQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
           V  +G    P     D    +F+ M+R    P       ++ A  +      A++L  +L
Sbjct: 22  VRFFGHLHPPKFHTVDDTLLSFNRMLRKHPPPPIFVFDKLLGAIVRMGHYPTAISLFSQL 81

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
              G  P  AT T+L++       ++ A  LLG I ++G  P      +L + +   G+ 
Sbjct: 82  HSKGITPSIATLTILINCYCHQAHLSFAFSLLGTILKMGFQPNMVTFNTLINGFCINGMV 141

Query: 519 KKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLME 564
            KA+     L AK   +    +  +INGL   G  +DA ++   ME
Sbjct: 142 SKAMAFRLDLMAKGYPLDEFSYGSLINGLCKNGQTRDALQLLQKME 187


>gi|297721877|ref|NP_001173302.1| Os03g0201300 [Oryza sativa Japonica Group]
 gi|108706707|gb|ABF94502.1| salt-inducible protein, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674288|dbj|BAH92030.1| Os03g0201300 [Oryza sativa Japonica Group]
          Length = 796

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 129/295 (43%), Gaps = 1/295 (0%)

Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338
           + + + E  + P+  T  +LVH +   G L  A     +++  G  PD   YN+++ A+ 
Sbjct: 195 VFRSLIELRLHPNHYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHC 254

Query: 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398
             G      +L+  M   GI  ++  Y  L+ +FA+ G ++ A ++   M    F+P L 
Sbjct: 255 RKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLR 314

Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHK-PDDRCTASMIAAYGKKNLLDKALNLLLE 457
           +  +L     QAG  D+A    D M RL    PD     +++ A  K      AL LL E
Sbjct: 315 TYNVLAVGLCQAGKVDEAFRLKDEMERLSTALPDVVTYNTLVDACFKWRCSSDALRLLEE 374

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI 517
           +   G +P   T+ ++V  L +   + EA   L KI+E G AP      +L D Y +AG 
Sbjct: 375 MRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGN 434

Query: 518 EKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572
             KA   +  +  K  +M       ++  L      +DA+ +      +GF   E
Sbjct: 435 VAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDE 489



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 87/383 (22%), Positives = 156/383 (40%), Gaps = 46/383 (12%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           ++EE    +V  Y+ LIDA+ K   +  A  ++ +M   G+  D  T   +++   K   
Sbjct: 410 IAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKR 469

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMIT------------ 355
            + A+E   S    GF PD+  Y +++ AY     P+  + L D MI             
Sbjct: 470 YEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNT 529

Query: 356 -----------------------SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
                                   G+   E  Y  ++ ++ + GD+  A +  N M    
Sbjct: 530 LIKGLCRMERLKEAIDKLNELVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENS 589

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
           F+P + +C  L+      G  D+A   F+  +  G K D     ++I +  K   +D AL
Sbjct: 590 FKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTAL 649

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
           +   ++E  G +P   TY V++  L       EA  +L K+++ G+      Q   C + 
Sbjct: 650 HFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADSGKLS----QSFACPLL 705

Query: 513 ARAGIEKKALQAL-GFLEAKKEQMGPDD-----FERIINGLLAGGFLQDAQRVHGLMEAQ 566
             +  ++  ++   G  EA+  +   D+      ER +NGL  GG L++A+ V   M  +
Sbjct: 706 KPSSADEADVKEHEGKPEAESSEKAQDNALETYMER-LNGLCTGGQLKEAKAVLDEMMQK 764

Query: 567 GFAASERLKVALISSQTFNRQRQ 589
           G        + L+      ++RQ
Sbjct: 765 GMPVDSSTYITLMEGLIKRQKRQ 787



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 135/317 (42%), Gaps = 8/317 (2%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ L+DA  K  C  DA R+L++M + G+ P +VT  ++V    K G L+ A    
Sbjct: 348 DVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKL 407

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E +   G  PD   YN++I AY  AG      +L+D M+  G++        +L +  + 
Sbjct: 408 EKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKM 467

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
                A ++ +      F P   S   ++ AY +  +P+ A   +D MI     P     
Sbjct: 468 KRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTY 527

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I    +   L +A++ L EL + G  P   TY +++    +   +  A +   K+ E
Sbjct: 528 NTLIKGLCRMERLKEAIDKLNELVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVE 587

Query: 496 LGEAPPFKIQVSLCDMYARA-GIEKKALQALGFLEA---KKEQMGPDDFERIINGLLAGG 551
                 FK  V  C+       +  K  +AL   E+   K +++    +  +I  +   G
Sbjct: 588 NS----FKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVG 643

Query: 552 FLQDAQRVHGLMEAQGF 568
            +  A      ME +G 
Sbjct: 644 DVDTALHFFDDMEVKGL 660



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 116/242 (47%), Gaps = 1/242 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L++AH ++  L +A  +L +M  +GI P   T   LV  +++ G + +A +  ES+ 
Sbjct: 246 YNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMT 305

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI-YLALLRSFAQCGDV 378
           ++GF+PD + YN + +    AG+      L D M        + + Y  L+ +  +    
Sbjct: 306 AYGFEPDLRTYNVLAVGLCQAGKVDEAFRLKDEMERLSTALPDVVTYNTLVDACFKWRCS 365

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             A ++   MR +  +PTL +  ++V++  + G  ++A    + +   G  PD     ++
Sbjct: 366 SDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTL 425

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           I AY K   + KA  L+ E+   G +    T   ++  L +++   +AE+LL    + G 
Sbjct: 426 IDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGF 485

Query: 499 AP 500
            P
Sbjct: 486 VP 487



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 84/180 (46%), Gaps = 8/180 (4%)

Query: 203 KEEDPSPLLAEWKELLQPSRIDWINLLDRL------REQNTQLYFKVAELVLSEESFQTN 256
           KE +P P L  W ++++   I  I+  + L       E+  +   K+ ELV  E+    +
Sbjct: 501 KEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNELV--EKGLVPD 558

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
              Y+ +I A+ KE  LE+A R   KM EN   PD+VT   L++     G LD+A + FE
Sbjct: 559 ETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFE 618

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
           S    G + D   YN++I +    G     +   D M   G++     Y  +L + ++ G
Sbjct: 619 SWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAG 678


>gi|42567170|ref|NP_194410.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332659854|gb|AEE85254.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 369

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 119/274 (43%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + +     NV  YS LI    K   L DAER L +M+   I P+++T + L+  Y+K G 
Sbjct: 74  MKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALIDAYAKRGK 133

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L +    ++ +      P+   Y+S+I       +    + ++D+MI+ G   +   Y  
Sbjct: 134 LSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPNVVTYST 193

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L   F +   V    ++ + M          SC  L++ Y QAG  D A   F YM   G
Sbjct: 194 LANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVFGYMTSNG 253

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P+ R    ++A       ++KAL+    ++K   +    TYT+++  + +  ++ EA 
Sbjct: 254 LIPNIRSYNIVLAGLFANGEVEKALSRFEHMQKTRNDLDIITYTIMIHGMCKACMVKEAY 313

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKA 521
            L  K+      P FK    +     RAG+  +A
Sbjct: 314 DLFYKLKFKRVEPDFKAYTIMIAELNRAGMRTEA 347



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 109/242 (45%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +  +    NV  +S LIDA+AK   L   + + K M +  I P++ T + L++       
Sbjct: 109 MDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNR 168

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D A +  + + S G  P+   Y+++   +  + +   G+ L+D M   G+  +      
Sbjct: 169 VDEAIKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNT 228

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L++ + Q G +  A  +   M      P + S  +++      G+ ++A S F++M +  
Sbjct: 229 LIKGYFQAGKIDLALGVFGYMTSNGLIPNIRSYNIVLAGLFANGEVEKALSRFEHMQKTR 288

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
           +  D      MI    K  ++ +A +L  +L+    EP    YT+++  L R  +  EA+
Sbjct: 289 NDLDIITYTIMIHGMCKACMVKEAYDLFYKLKFKRVEPDFKAYTIMIAELNRAGMRTEAD 348

Query: 488 QL 489
            L
Sbjct: 349 AL 350



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 60/296 (20%), Positives = 119/296 (40%), Gaps = 35/296 (11%)

Query: 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320
           S L++     N ++DA  +  +M + GI  D+V  T+L+    K   +  A E  + ++ 
Sbjct: 17  SSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDTLCKNRLVVPALEVLKRMKD 76

Query: 321 HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRG 380
            G  P+   Y+S+I     +G+           +     R  E                 
Sbjct: 77  RGISPNVVTYSSLITGLCKSGR-----------LADAERRLHE----------------- 108

Query: 381 AGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIA 440
                  M  ++  P + + + L++AY + G   +  S +  MI++   P+    +S+I 
Sbjct: 109 -------MDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIY 161

Query: 441 AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
                N +D+A+ +L  +   G  P   TY+ L +   +   +++  +LL  + + G A 
Sbjct: 162 GLCMHNRVDEAIKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAA 221

Query: 501 PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDA 556
                 +L   Y +AG    AL   G++ +         +  ++ GL A G ++ A
Sbjct: 222 NTVSCNTLIKGYFQAGKIDLALGVFGYMTSNGLIPNIRSYNIVLAGLFANGEVEKA 277



 Score = 43.1 bits (100), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 67/141 (47%)

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
           M++LG +PD    +S++  +   N +  A+ +  ++EK G +      T+L+D L + +L
Sbjct: 4   MMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDTLCKNRL 63

Query: 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFER 542
           +  A ++L ++ + G +P      SL     ++G    A + L  +++KK       F  
Sbjct: 64  VVPALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSA 123

Query: 543 IINGLLAGGFLQDAQRVHGLM 563
           +I+     G L     V+ +M
Sbjct: 124 LIDAYAKRGKLSKVDSVYKMM 144


>gi|255563546|ref|XP_002522775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538013|gb|EEF39626.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1071

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 149/328 (45%), Gaps = 4/328 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  ++ LI+    E  L+ A  +LKKM E+G VP +VT   +++ Y K G    A E  
Sbjct: 167 DVSTFNILINVLCVEGKLKKAGYLLKKMEESGYVPSVVTYNTVLNWYCKKGRYKAALELI 226

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + + S G + D   YN ++       +   G  L+  M    I  +E  Y +++  F + 
Sbjct: 227 DQMGSKGIEADACTYNMLVDDLCKNNRSAKGYLLLKKMRKRMISPNEITYNSIINGFVKE 286

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A +I   M +    P   +   L++ +   G+ +QA +  + M   G KP++   
Sbjct: 287 GKIGAATRIFQEMSMLNLLPNCVTYNALIDGHCHDGNFEQALTILEMMEATGPKPNEVSY 346

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
           ++++    +    + + ++L  +  +G   G   YT ++D L R  L+NE+ +LL K+ +
Sbjct: 347 SALLNGLCRHAKFELSKSILERMRMNGMIVGCIAYTAMIDGLCRNGLLNESVKLLDKMLK 406

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFL 553
            G  P       L + + R G  K   + +   +  K  + P+   +  +I      G +
Sbjct: 407 DGVVPDVVTFSVLINGFCRVGKIKNVKEII--CKMYKAGLAPNSIIYTTLIYNYCKTGDV 464

Query: 554 QDAQRVHGLMEAQGFAASERLKVALISS 581
            +A +V+  M   G+ A+  +   L+SS
Sbjct: 465 VEAFKVYVAMSRIGYDANCFICNVLVSS 492



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/360 (21%), Positives = 157/360 (43%), Gaps = 6/360 (1%)

Query: 218 LQPSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L P+ + +  L+D    + N +    + E+ +     + N   YS L++   +    E +
Sbjct: 304 LLPNCVTYNALIDGHCHDGNFEQALTILEM-MEATGPKPNEVSYSALLNGLCRHAKFELS 362

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
           + IL++M  NG++   +  T ++    + G L+ + +  + +   G  PD   ++ +I  
Sbjct: 363 KSILERMRMNGMIVGCIAYTAMIDGLCRNGLLNESVKLLDKMLKDGVVPDVVTFSVLING 422

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           +   G+ K    ++  M  +G+  +  IY  L+ ++ + GDV  A ++   M    +   
Sbjct: 423 FCRVGKIKNVKEIICKMYKAGLAPNSIIYTTLIYNYCKTGDVVEAFKVYVAMSRIGYDAN 482

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
              C +LV +  + G    A   F +M ++G+ P+      +I  YG      KA ++  
Sbjct: 483 CFICNVLVSSLCKDGKVGVAEYFFHHMSKIGNVPNSITFDCIINGYGNSGNGLKAFSMFD 542

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
           E+ K G  P   TY  L+  L R     EA++LL K+  +  A       ++     ++G
Sbjct: 543 EMIKAGHHPSHFTYGGLLKALCRAGKFKEAKRLLDKLHYIPSAVDTVTYNTILVETFKSG 602

Query: 517 IEKKALQALGFLEAKKEQMGPDDFER--IINGLLAGGFLQDAQRVHGLMEAQGFAASERL 574
           +   A+    F E  +  + PD +    I  GL+  G +  A   +G +  +G  + E++
Sbjct: 603 MLTDAVAL--FDEMVQRNVLPDSYTYAIIFAGLIRRGKMVAALHFYGNLLGKGAVSPEKV 660



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/266 (21%), Positives = 117/266 (43%), Gaps = 4/266 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +  +  + +   Y+ L+D   K N       +LKKM +  I P+ +T   +++ + K G 
Sbjct: 229 MGSKGIEADACTYNMLVDDLCKNNRSAKGYLLLKKMRKRMISPNEITYNSIINGFVKEGK 288

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A   F+ +      P+   YN++I  + + G  +  +++++MM  +G + +E  Y A
Sbjct: 289 IGAATRIFQEMSMLNLLPNCVTYNALIDGHCHDGNFEQALTILEMMEATGPKPNEVSYSA 348

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           LL    +      +  I   MR+        + T +++   + G  +++    D M++ G
Sbjct: 349 LLNGLCRHAKFELSKSILERMRMNGMIVGCIAYTAMIDGLCRNGLLNESVKLLDKMLKDG 408

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD    + +I  + +   +     ++ ++ K G  P    YT L+    +   + EA 
Sbjct: 409 VVPDVVTFSVLINGFCRVGKIKNVKEIICKMYKAGLAPNSIIYTTLIYNYCKTGDVVEAF 468

Query: 488 QLLGKISELG-EAPPFKIQV---SLC 509
           ++   +S +G +A  F   V   SLC
Sbjct: 469 KVYVAMSRIGYDANCFICNVLVSSLC 494



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 72/363 (19%), Positives = 153/363 (42%), Gaps = 17/363 (4%)

Query: 215  KELLQPSRIDWINLLD---RLREQNTQLYF--KVAELVLSEESFQTNVRDYSKLIDAHAK 269
            K  + P ++ +   +D   R  +    LYF   + +  L  +   TNV     +++ +++
Sbjct: 652  KGAVSPEKVMYTTFVDGLFRAGQSKAALYFCEDMEKNGLCADLIATNV-----ILNGYSR 706

Query: 270  ENCLEDAERILKKM-NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKK 328
               +  A  I   M +   I P + T  +L+H Y+K  NL +    +  +   G  PDK 
Sbjct: 707  MGKMAKAGDIFTMMWSGITISPSLATYNILLHGYAKKKNLSKCSNLYNIMMRTGIFPDKL 766

Query: 329  VYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIM 388
              +S+I+ +  +    +G+ L+  M+  G+   +  +  L+  + +  +V  A  + NIM
Sbjct: 767  TCHSLILGFCKSAMLDVGLKLLKKMLLDGVAVDQCTFNMLIMKYCETDEVGKAFDLVNIM 826

Query: 389  RIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLL 448
             + +  P + +   ++    +     ++      M+  G  PD R   +++    +   +
Sbjct: 827  NLFDIFPDMTTHDSIISVLSRVSTVQESHLLLHEMLERGCIPDRRQYIALVNRMCRMGHI 886

Query: 449  DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSL 508
              A  L  E+E  G   G    + LV  L +   + EA+ +L  +      P      +L
Sbjct: 887  HGAFKLKDEMEALGISSGDVAESALVRGLAKCGKVEEAKLVLDFMLRKSLIPTIATFTTL 946

Query: 509  CDMYARAGIEKKALQ---ALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEA 565
              M+ R     +AL+    + F + K + +    +  +I+GL A G +  A +++  ++ 
Sbjct: 947  MHMFCRNESLVEALKLKDTMDFCDVKLDVIA---YNVLISGLCADGDVASALKLYKEIKQ 1003

Query: 566  QGF 568
            +G 
Sbjct: 1004 RGL 1006



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 90/216 (41%)

Query: 260  YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
            ++ LI  + + + +  A  ++  MN   I PD+ T   ++ + S+   +  +      + 
Sbjct: 803  FNMLIMKYCETDEVGKAFDLVNIMNLFDIFPDMTTHDSIISVLSRVSTVQESHLLLHEML 862

Query: 320  SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
              G  PD++ Y +++      G       L D M   GI   +    AL+R  A+CG V 
Sbjct: 863  ERGCIPDRRQYIALVNRMCRMGHIHGAFKLKDEMEALGISSGDVAESALVRGLAKCGKVE 922

Query: 380  GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
             A  + + M  +   PT+ + T L+  + +     +A    D M     K D      +I
Sbjct: 923  EAKLVLDFMLRKSLIPTIATFTTLMHMFCRNESLVEALKLKDTMDFCDVKLDVIAYNVLI 982

Query: 440  AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
            +       +  AL L  E+++ G  P   TY +L+D
Sbjct: 983  SGLCADGDVASALKLYKEIKQRGLWPNMTTYCILID 1018



 Score = 43.5 bits (101), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 68/338 (20%), Positives = 126/338 (37%), Gaps = 20/338 (5%)

Query: 229 LDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAH--AKENCLEDAERILKKMNEN 286
           L  LR  + +L  K    V+ +   +     +   I  H   +    E+A+ ILK +++ 
Sbjct: 17  LASLRPVHGRLALKFLNWVIQQPGLELRHLTHMLSITTHILVRARLYENAKSILKHLSQM 76

Query: 287 GIVPDIVTSTV----------------LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVY 330
           G+    V   +                L+ +Y + G +  A E F  +   GF P     
Sbjct: 77  GVGSKSVFGALMNTYPLCKSNPSVFDLLIRVYLREGMVGDALETFRLMGIRGFNPSVYTC 136

Query: 331 NSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRI 390
           N ++   V   +          M+   +      +  L+      G ++ AG +   M  
Sbjct: 137 NMLLGKLVKERKVGAVWLFFKEMLARRVCPDVSTFNILINVLCVEGKLKKAGYLLKKMEE 196

Query: 391 EEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIA-AYGKKNLLD 449
             + P++ +   ++  Y + G    A    D M   G +  D CT +M+     K N   
Sbjct: 197 SGYVPSVVTYNTVLNWYCKKGRYKAALELIDQMGSKGIEA-DACTYNMLVDDLCKNNRSA 255

Query: 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLC 509
           K   LL ++ K    P   TY  +++   +   I  A ++  ++S L   P      +L 
Sbjct: 256 KGYLLLKKMRKRMISPNEITYNSIINGFVKEGKIGAATRIFQEMSMLNLLPNCVTYNALI 315

Query: 510 DMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
           D +   G  ++AL  L  +EA   +     +  ++NGL
Sbjct: 316 DGHCHDGNFEQALTILEMMEATGPKPNEVSYSALLNGL 353



 Score = 42.7 bits (99), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 18/206 (8%)

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
            ++  L+R + + G V  A +   +M I  F P++ +C +L+    +          F  
Sbjct: 99  SVFDLLIRVYLREGMVGDALETFRLMGIRGFNPSVYTCNMLLGKLVKERKVGAVWLFFKE 158

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
           M+     PD      +I     +  L KA  LL ++E+ G+ P   TY  +++W  +   
Sbjct: 159 MLARRVCPDVSTFNILINVLCVEGKLKKAGYLLKKMEESGYVPSVVTYNTVLNWYCKKGR 218

Query: 483 INEAEQLLGKISELG---EAPPFKIQV-SLCDMYARAGIEKKALQALGFL---EAKKEQM 535
              A +L+ ++   G   +A  + + V  LC         K    A G+L   + +K  +
Sbjct: 219 YKAALELIDQMGSKGIEADACTYNMLVDDLC---------KNNRSAKGYLLLKKMRKRMI 269

Query: 536 GPDD--FERIINGLLAGGFLQDAQRV 559
            P++  +  IING +  G +  A R+
Sbjct: 270 SPNEITYNSIINGFVKEGKIGAATRI 295


>gi|4455203|emb|CAB36526.1| putative protein [Arabidopsis thaliana]
 gi|7269532|emb|CAB79535.1| putative protein [Arabidopsis thaliana]
          Length = 439

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 119/274 (43%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + +     NV  YS LI    K   L DAER L +M+   I P+++T + L+  Y+K G 
Sbjct: 144 MKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALIDAYAKRGK 203

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L +    ++ +      P+   Y+S+I       +    + ++D+MI+ G   +   Y  
Sbjct: 204 LSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPNVVTYST 263

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L   F +   V    ++ + M          SC  L++ Y QAG  D A   F YM   G
Sbjct: 264 LANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVFGYMTSNG 323

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P+ R    ++A       ++KAL+    ++K   +    TYT+++  + +  ++ EA 
Sbjct: 324 LIPNIRSYNIVLAGLFANGEVEKALSRFEHMQKTRNDLDIITYTIMIHGMCKACMVKEAY 383

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKA 521
            L  K+      P FK    +     RAG+  +A
Sbjct: 384 DLFYKLKFKRVEPDFKAYTIMIAELNRAGMRTEA 417



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 109/242 (45%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +  +    NV  +S LIDA+AK   L   + + K M +  I P++ T + L++       
Sbjct: 179 MDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNR 238

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D A +  + + S G  P+   Y+++   +  + +   G+ L+D M   G+  +      
Sbjct: 239 VDEAIKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNT 298

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L++ + Q G +  A  +   M      P + S  +++      G+ ++A S F++M +  
Sbjct: 299 LIKGYFQAGKIDLALGVFGYMTSNGLIPNIRSYNIVLAGLFANGEVEKALSRFEHMQKTR 358

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
           +  D      MI    K  ++ +A +L  +L+    EP    YT+++  L R  +  EA+
Sbjct: 359 NDLDIITYTIMIHGMCKACMVKEAYDLFYKLKFKRVEPDFKAYTIMIAELNRAGMRTEAD 418

Query: 488 QL 489
            L
Sbjct: 419 AL 420



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/277 (22%), Positives = 121/277 (43%)

Query: 280 LKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339
           L KM + GI PDIVT++ LV+ +  + ++  A      +   G + D  V   +I     
Sbjct: 71  LGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDTLCK 130

Query: 340 AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLES 399
                  + ++  M   GI  +   Y +L+    + G +  A +  + M  ++  P + +
Sbjct: 131 NRLVVPALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVIT 190

Query: 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELE 459
            + L++AY + G   +  S +  MI++   P+    +S+I      N +D+A+ +L  + 
Sbjct: 191 FSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMI 250

Query: 460 KDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEK 519
             G  P   TY+ L +   +   +++  +LL  + + G A       +L   Y +AG   
Sbjct: 251 SKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKID 310

Query: 520 KALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDA 556
            AL   G++ +         +  ++ GL A G ++ A
Sbjct: 311 LALGVFGYMTSNGLIPNIRSYNIVLAGLFANGEVEKA 347



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 80/172 (46%)

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
           E  P L +C +LV  + +   P  A S    M++LG +PD    +S++  +   N +  A
Sbjct: 43  EISPDLYTCNILVNCFCRCFQPSSALSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDA 102

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
           + +  ++EK G +      T+L+D L + +L+  A ++L ++ + G +P      SL   
Sbjct: 103 VYVAGQMEKMGIKRDVVVDTILIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITG 162

Query: 512 YARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLM 563
             ++G    A + L  +++KK       F  +I+     G L     V+ +M
Sbjct: 163 LCKSGRLADAERRLHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMM 214


>gi|242037347|ref|XP_002466068.1| hypothetical protein SORBIDRAFT_01g000640 [Sorghum bicolor]
 gi|241919922|gb|EER93066.1| hypothetical protein SORBIDRAFT_01g000640 [Sorghum bicolor]
          Length = 722

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 116/245 (47%), Gaps = 4/245 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS ++D +A+    E+   +  +   +G  PD V   VL  M+ +AG+ +  +  F+ + 
Sbjct: 267 YSAVLDVYAQLGMKEEVLALFDRARGSGWKPDHVAFAVLAKMFGEAGDYEGIQFVFKEMT 326

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +P+  VYN+++ A    G+P L  +L + M+  G++ +     AL + + +    R
Sbjct: 327 EVGIKPNIFVYNALLEALGKTGKPGLARNLFEEMVEQGVDPNARTLTALAKIYGRARWGR 386

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM----IRLGHKPDDRCT 435
            A Q+ + MR  +       C  L+      G  ++A   F+ M     R   KPD    
Sbjct: 387 DALQLWDKMRELKLPADNILCNTLLSMCADVGLVNEAEQLFNEMKDPECRDVPKPDKWSY 446

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            +MI  YG     D+AL L  E+ K G EP   +YT+++  LG+ Q I +A ++L    E
Sbjct: 447 TAMINIYGSNGDTDRALQLFGEMLKGGIEPNIMSYTIVIQCLGKAQRIQQAVEVLEAGLE 506

Query: 496 LGEAP 500
            G  P
Sbjct: 507 KGLKP 511



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 91/392 (23%), Positives = 161/392 (41%), Gaps = 26/392 (6%)

Query: 220 PSRIDWINLLDRLREQNTQLYFKVAEL-VLSEESFQTNVRDYSKLIDAHAKENCLEDAER 278
           PS  D + LL+ L     +    +A L  L   +FQ +   ++  + +         AER
Sbjct: 155 PSPSDALLLLNYLHPSWRKTLSLLAWLRALPAGAFQLDTIFFNVALKSLRAARQWPHAER 214

Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS-HGFQPDKKVYNSMIMAY 337
           +   M + G+  D +T + L+    +     +A E FE + +  G  PD+  Y++++  Y
Sbjct: 215 LALDMLDAGVPLDNITYSTLITAARRCRQFAKAVEWFERMYAADGVLPDEVTYSAVLDVY 274

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
              G  +  ++L D    SG +     +  L + F + GD  G   +   M     +P +
Sbjct: 275 AQLGMKEEVLALFDRARGSGWKPDHVAFAVLAKMFGEAGDYEGIQFVFKEMTEVGIKPNI 334

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
                L+EA G+ G P  AR+ F+ M+  G  P+ R   ++   YG+      AL L  +
Sbjct: 335 FVYNALLEALGKTGKPGLARNLFEEMVEQGVDPNARTLTALAKIYGRARWGRDALQLWDK 394

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI--SELGEAP-PFKIQ-VSLCDMYA 513
           + +            L+     + L+NEAEQL  ++   E  + P P K    ++ ++Y 
Sbjct: 395 MRELKLPADNILCNTLLSMCADVGLVNEAEQLFNEMKDPECRDVPKPDKWSYTAMINIYG 454

Query: 514 RAGIEKKALQALGFLEAKKEQMGPD--DFERIINGL----------------LAGGFLQD 555
             G   +ALQ  G  E  K  + P+   +  +I  L                L  G   D
Sbjct: 455 SNGDTDRALQLFG--EMLKGGIEPNIMSYTIVIQCLGKAQRIQQAVEVLEAGLEKGLKPD 512

Query: 556 AQRVHGLMEAQGFAASERLKVALISSQTFNRQ 587
            +    L+     ++ E +++ L S Q FN+ 
Sbjct: 513 DRLCGCLLSVIALSSGEEMEIVLSSLQKFNQN 544


>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
          Length = 735

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 115/245 (46%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  +S LID   KE  L +AE + K+M + GI PD VT T L+  + K   LD+A    
Sbjct: 316 DVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHML 375

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + + S G  P+ + +N +I  Y  A     G+ L   M   G+      Y  L++ F + 
Sbjct: 376 DLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCEL 435

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A ++   M     +P + S  +L++     G+P++A   F+ + +   + D    
Sbjct: 436 GKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIY 495

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +I      + +D A +L   L   G +P   TY +++  L +   ++EA+ L  K+ E
Sbjct: 496 NIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEE 555

Query: 496 LGEAP 500
            G +P
Sbjct: 556 DGHSP 560



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 134/320 (41%), Gaps = 5/320 (1%)

Query: 242 KVAELVL-----SEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTST 296
           KV++ VL      E  FQ N   Y  ++    K      A  +L+KM E  I  D V  +
Sbjct: 192 KVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYS 251

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           +++    K G+LD A   F  +   GF+ D  +Y ++I  +  AG+   G  L+  MI  
Sbjct: 252 IIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKR 311

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
            I      + AL+  F + G +R A ++   M      P   + T L++ + +    D+A
Sbjct: 312 KITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKA 371

Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476
               D M+  G  P+ R    +I  Y K NL+D  L L  ++   G      TY  L+  
Sbjct: 372 NHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQG 431

Query: 477 LGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG 536
              L  +  A++L  ++      P       L D     G  +KAL+    +E  K ++ 
Sbjct: 432 FCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELD 491

Query: 537 PDDFERIINGLLAGGFLQDA 556
              +  II+G+     + DA
Sbjct: 492 IGIYNIIIHGMCNASKVDDA 511



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 93/215 (43%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LID   KEN L+ A  +L  M   G  P+I T  +L++ Y KA  +D   E F  + 
Sbjct: 355 YTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMS 414

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G   D   YN++I  +   G+ ++   L   M++  +      Y  LL      G+  
Sbjct: 415 LRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPE 474

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A +I   +   + +  +    +++     A   D A   F  +   G KPD +    MI
Sbjct: 475 KALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMI 534

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
               KK  L +A  L  ++E+DG  P   TY +L+
Sbjct: 535 GGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILI 569



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 130/272 (47%), Gaps = 8/272 (2%)

Query: 215 KELLQ----PSRIDWINLLDRLREQNTQL--YFKVAELVLSEESFQTNVRDYSKLIDAHA 268
           KE++Q    P  + + +L+D   ++N QL     + +L++S+     N+R ++ LI+ + 
Sbjct: 341 KEMIQRGISPDTVTYTSLIDGFCKEN-QLDKANHMLDLMVSKGC-GPNIRTFNILINGYC 398

Query: 269 KENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKK 328
           K N ++D   + +KM+  G+V D VT   L+  + + G L+ AKE F+ + S   +PD  
Sbjct: 399 KANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIV 458

Query: 329 VYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIM 388
            Y  ++    + G+P+  + + + +  S +E    IY  ++        V  A  +   +
Sbjct: 459 SYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSL 518

Query: 389 RIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLL 448
            ++  +P +++  +++    + G   +A   F  M   GH P+      +I A+  +   
Sbjct: 519 PLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDA 578

Query: 449 DKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
            K+  L+ E+++ GF    +T    +  L R+
Sbjct: 579 TKSAKLIEEIKRCGFSVDASTLRFALSTLARM 610



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 68/305 (22%), Positives = 128/305 (41%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           ++ +   +S LI+    E  + +A  ++ +M E G  P ++T   LV+     G +  A 
Sbjct: 138 YEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAV 197

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
              + +   GFQP++  Y  ++     +GQ  L M L+  M    I+     Y  ++   
Sbjct: 198 LLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGL 257

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + G +  A  + N M I+ F+  +   T L+  +  AG  D        MI+    PD 
Sbjct: 258 CKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDV 317

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
              +++I  + K+  L +A  L  E+ + G  P   TYT L+D   +   +++A  +L  
Sbjct: 318 VAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDL 377

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
           +   G  P  +    L + Y +A +    L+    +  +        +  +I G    G 
Sbjct: 378 MVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGK 437

Query: 553 LQDAQ 557
           L+ A+
Sbjct: 438 LEVAK 442



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 83/375 (22%), Positives = 159/375 (42%), Gaps = 13/375 (3%)

Query: 203 KEEDPSPLLAEW-KELLQPSRIDWINLLDRLREQNTQLYFKVAELV--LSEESFQTNVRD 259
           KE+D   L  E  +   +P  ID+  L   +    T+ Y  V +L   +  +    N+  
Sbjct: 52  KEDDAVDLFQEMTRSRPRPRLIDFSRLFSVV--ARTKQYDLVLDLCKQMELKGIAHNLYT 109

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
            S +I+   +   L  A   + K+ + G  PD VT + L++     G +  A E  + + 
Sbjct: 110 LSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMV 169

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +P     N+++      G+    + L+D M+ +G + +E  Y  +L+   + G   
Sbjct: 170 EMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTA 229

Query: 380 GAGQITNIMRIEEFQPTLESC--TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
            A ++  + ++EE +  L++   +++++   + G  D A + F+ M   G K D     +
Sbjct: 230 LAMEL--LRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTT 287

Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           +I  +      D    LL ++ K    P    ++ L+D   +   + EAE+L  ++ + G
Sbjct: 288 LIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRG 347

Query: 498 EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQD 555
            +P      SL D + +     KA   L  + +K    GP+   F  +ING      + D
Sbjct: 348 ISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSK--GCGPNIRTFNILINGYCKANLIDD 405

Query: 556 AQRVHGLMEAQGFAA 570
              +   M  +G  A
Sbjct: 406 GLELFRKMSLRGVVA 420



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 88/192 (45%)

Query: 388 MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447
           M ++     L + ++++    +      A S    +I+LG++PD    +++I     +  
Sbjct: 98  MELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGR 157

Query: 448 LDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVS 507
           + +AL L+  + + G +P   T   LV+ L     +++A  L+ ++ E G  P       
Sbjct: 158 VSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGP 217

Query: 508 LCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
           +  +  ++G    A++ L  +E +K ++    +  II+GL   G L +A  +   ME +G
Sbjct: 218 VLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKG 277

Query: 568 FAASERLKVALI 579
           F A   +   LI
Sbjct: 278 FKADIIIYTTLI 289


>gi|297809453|ref|XP_002872610.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318447|gb|EFH48869.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 575

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 144/307 (46%), Gaps = 6/307 (1%)

Query: 220 PSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAER 278
           P+   +  ++++L ++  T+  FKV +  + E     N+  Y+ LI    +E    +A +
Sbjct: 266 PNLYTYNCVMNQLCKDGRTKDAFKVFD-EMRERGVSCNIVTYNTLIGGLCREMKANEANK 324

Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338
           ++ +M    I P+++T   L+  +   G L +A      L+S G  P    YN ++  + 
Sbjct: 325 VMDQMKSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFC 384

Query: 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398
             G       +V  M   GI+ S+  Y  L+ +FA+  ++  A Q+ + M      P + 
Sbjct: 385 RKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVPDVH 444

Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
           + ++L+  +   G  ++A   F  M+    +P++    +MI  Y K+    +AL L  ++
Sbjct: 445 TYSVLIHGFCIKGQMNEASRLFKSMVEKMLEPNEVIYNTMILGYCKEGSSYRALRLFRDM 504

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
           E+    P  A+Y+ L+  L + + + EAE L+ K+ + G  P      ++C++ +RA  +
Sbjct: 505 EEKELAPNVASYSYLIRVLCKERKLKEAEDLVEKMIDSGIDP----SDTICNLISRAKTD 560

Query: 519 KKALQAL 525
               Q +
Sbjct: 561 SPVAQII 567



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 76/344 (22%), Positives = 145/344 (42%), Gaps = 16/344 (4%)

Query: 201 LEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLR-----EQNTQLYFKVAELVLSEESFQ 254
           +EK  D   LL E +E    P+ + +  L+D        E+   L+F++ +  L      
Sbjct: 179 IEKSFD---LLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLV----- 230

Query: 255 TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA 314
            N   Y+ LI    K    +    + +KM E+G+ P++ T   +++   K G    A + 
Sbjct: 231 ANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKV 290

Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
           F+ +R  G   +   YN++I       +      ++D M +  I  +   Y  L+  F  
Sbjct: 291 FDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITYNTLIDGFCS 350

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
            G +  A  +   ++     P+L +  +LV  + + GD   A      M   G KP    
Sbjct: 351 VGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVT 410

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
              +I  + + + ++ A+ L   +E+ G  P   TY+VL+        +NEA +L   + 
Sbjct: 411 YTILIDTFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMV 470

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
           E    P   I  ++   Y + G   +AL+   F + +++++ P+
Sbjct: 471 EKMLEPNEVIYNTMILGYCKEGSSYRALRL--FRDMEEKELAPN 512



 Score = 46.2 bits (108), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 48/254 (18%), Positives = 96/254 (37%), Gaps = 42/254 (16%)

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           V+++ Y ++ +LD +   F  +   GF P    +N+++   V +                
Sbjct: 99  VIINAYVQSQSLDSSIYYFNEMVDKGFVPGSNCFNNLLTFVVGSS--------------- 143

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
                         SF Q        +I  ++ +  F   ++ C        +AG+ +++
Sbjct: 144 --------------SFNQWWCFFNESKIKVVLDVYSFGIVIKGCC-------EAGEIEKS 182

Query: 417 RSNFDYMIRL---GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVL 473
              FD ++ L   G  P+     ++I    KK  ++KA +L  E+ K G      TYTVL
Sbjct: 183 ---FDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVL 239

Query: 474 VDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE 533
           +  L +  +  +  ++  K+ E G  P       + +   + G  K A +    +  +  
Sbjct: 240 IHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRERGV 299

Query: 534 QMGPDDFERIINGL 547
                 +  +I GL
Sbjct: 300 SCNIVTYNTLIGGL 313


>gi|297802850|ref|XP_002869309.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297315145|gb|EFH45568.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1114

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 145/320 (45%), Gaps = 6/320 (1%)

Query: 254  QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
            Q  +  Y+ LI    + + +E A+ +  ++   G +PD+ T   L+  Y K+G +D   E
Sbjct: 784  QPKLPTYNLLIGGLLEADMIEIAQDVFLQVKNTGCIPDVATYNFLLDAYGKSGKIDELFE 843

Query: 314  AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV-DMMITSGIERSEEIYLALLRSF 372
             ++ + +H  +P+   +N +I   V AG     + L  D+M       +   Y  L+   
Sbjct: 844  IYKEMSAHECEPNTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGL 903

Query: 373  AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            ++ G +  A Q+   M     +P      +L+  +G+AG+ D A + F  M++ G +PD 
Sbjct: 904  SKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDL 963

Query: 433  RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
            +  + ++        +D+ L+   EL++ G  P    Y ++++ LG+   + EA  L  +
Sbjct: 964  KTYSVLVDCLCMVGRVDEGLHYFRELKESGLNPDVVCYNLIINGLGKFHRLEEALVLFNE 1023

Query: 493  ISEL-GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLA 549
            + +  G  P      SL      AG+ ++A +   + E ++  + P+   F  +I G   
Sbjct: 1024 MKKSRGITPDLYTYNSLILNLGIAGMVEEAGKI--YNEIQRAGLEPNVFTFNALIRGYSL 1081

Query: 550  GGFLQDAQRVHGLMEAQGFA 569
             G  + A  V+  M   GF+
Sbjct: 1082 SGKPEHAYAVYQTMVTGGFS 1101



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 126/278 (45%), Gaps = 3/278 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  L+D  +    L+   +   +M ++G VPD+VT T+LV    KAGN   A    + +R
Sbjct: 333 YITLLDRFSDNRDLDSVNQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFAKLDVMR 392

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P+   YN++I   +   +    + + D M + G++ +   Y+  +  + + GD  
Sbjct: 393 DQGILPNLHTYNTLICGLLRVHRLDDALEIFDNMESLGVKPTAYTYIVFIDYYGKSGDSV 452

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A +    M+ +   P + +C   + +  +AG   +A+  F  +  +G  PD      M+
Sbjct: 453 SALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMM 512

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             Y K   +D+A+ LL E+ ++  EP       L++ L +   ++EA ++  ++ E+   
Sbjct: 513 KCYSKVGEIDEAIKLLSEMVENCCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLK 572

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP 537
           P     V+   + A  G   K  +A+   E   ++  P
Sbjct: 573 PTV---VTYNTLLAGLGKNGKIQEAIELFEGMVQKGCP 607



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 130/290 (44%), Gaps = 6/290 (2%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           + F+ +++ YS L+    K   +E    +LK+M   G+ P++ T T+ + +  +AG ++ 
Sbjct: 219 DGFRPSLQTYSSLMVGLGKRRDIESVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINE 278

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A E  + +   G  PD   Y  +I A   A +      +   M T   +     Y+ LL 
Sbjct: 279 AYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFAKMKTGRHKPDRVTYITLLD 338

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
            F+   D+    Q  + M  +   P + + T+LV+A  +AG+  +A +  D M   G  P
Sbjct: 339 RFSDNRDLDSVNQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFAKLDVMRDQGILP 398

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           +     ++I    + + LD AL +   +E  G +P   TY V +D+ G+      A +  
Sbjct: 399 NLHTYNTLICGLLRVHRLDDALEIFDNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETF 458

Query: 491 GKISELGEAPPFKIQVSLCDMY--ARAGIEKKALQALGFLEAKKEQMGPD 538
            K+   G AP   I      +Y  A+AG +++A Q   F   K   + PD
Sbjct: 459 EKMKTKGIAP--NIVACNASLYSLAKAGRDREAKQI--FYGLKDIGLVPD 504



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 150/343 (43%), Gaps = 10/343 (2%)

Query: 219 QPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAER 278
           +P R+ +I LLDR  +             + ++    +V  ++ L+DA  K     +A  
Sbjct: 327 KPDRVTYITLLDRFSDNRDLDSVNQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFA 386

Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338
            L  M + GI+P++ T   L+    +   LD A E F+++ S G +P    Y   I  Y 
Sbjct: 387 KLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALEIFDNMESLGVKPTAYTYIVFIDYYG 446

Query: 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398
            +G     +   + M T GI  +     A L S A+ G  R A QI   ++     P   
Sbjct: 447 KSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSV 506

Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
           +  ++++ Y + G+ D+A      M+    +PD     S+I    K + +D+A  + + +
Sbjct: 507 TYNMMMKCYSKVGEIDEAIKLLSEMVENCCEPDVIVVNSLINTLYKADRVDEAWKMFMRM 566

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQV-SLCDMYARAGI 517
           ++   +P   TY  L+  LG+   I EA +L   + + G  PP  I   +L D   +   
Sbjct: 567 KEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKG-CPPNTITFNTLFDCLCKNDE 625

Query: 518 EKKALQALGFLEAKKEQMG--PDDF--ERIINGLLAGGFLQDA 556
              AL+ L     K   MG  PD F    II GL+  G +++A
Sbjct: 626 VTLALKML----FKMMDMGCVPDVFTYNTIIFGLVKNGQVKEA 664



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 67/315 (21%), Positives = 139/315 (44%), Gaps = 5/315 (1%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           V+ ++    N+  Y+ LI    + + L+DA  I   M   G+ P   T  V +  Y K+G
Sbjct: 390 VMRDQGILPNLHTYNTLICGLLRVHRLDDALEIFDNMESLGVKPTAYTYIVFIDYYGKSG 449

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           +   A E FE +++ G  P+    N+ + +   AG+ +    +   +   G+      Y 
Sbjct: 450 DSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYN 509

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            +++ +++ G++  A ++ + M     +P +     L+    +A   D+A   F  M  +
Sbjct: 510 MMMKCYSKVGEIDEAIKLLSEMVENCCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEM 569

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
             KP      +++A  GK   + +A+ L   + + G  P   T+  L D L +   +  A
Sbjct: 570 KLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLA 629

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERII 544
            ++L K+ ++G  P      ++     + G  K   +A+ F    K+ + PD      ++
Sbjct: 630 LKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVK---EAMCFFHQMKKLVYPDFVTLCTLL 686

Query: 545 NGLLAGGFLQDAQRV 559
            G++  G ++DA ++
Sbjct: 687 PGVVKAGLIEDAYKI 701



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 69/301 (22%), Positives = 121/301 (40%), Gaps = 37/301 (12%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           L  A   L+KM E G V +  +   L+H+  K+     A E +  +   GF+P  + Y+S
Sbjct: 171 LRQAPFALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILDGFRPSLQTYSS 230

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +++        +  M L+  M T G++ +   +   +R   + G +  A +I   M  E 
Sbjct: 231 LMVGLGKRRDIESVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEG 290

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P + + T+L++A   A   D A+  F  M    HKPD     +++  +     LD   
Sbjct: 291 CGPDVVTYTVLIDALCTARKLDCAKEVFAKMKTGRHKPDRVTYITLLDRFSDNRDLDSVN 350

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLG---------------------------------- 478
               E+EKDG  P   T+T+LVD L                                   
Sbjct: 351 QFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFAKLDVMRDQGILPNLHTYNTLICGL 410

Query: 479 -RLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP 537
            R+  +++A ++   +  LG  P     +   D Y ++G    AL+   F + K + + P
Sbjct: 411 LRVHRLDDALEIFDNMESLGVKPTAYTYIVFIDYYGKSGDSVSALET--FEKMKTKGIAP 468

Query: 538 D 538
           +
Sbjct: 469 N 469



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 138/314 (43%), Gaps = 10/314 (3%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + +E    +V  Y+ LIDA      L+ A+ +  KM      PD VT   L+  +S   +
Sbjct: 286 MDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFAKMKTGRHKPDRVTYITLLDRFSDNRD 345

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           LD   + +  +   G  PD   +  ++ A   AG      + +D+M   GI  +   Y  
Sbjct: 346 LDSVNQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFAKLDVMRDQGILPNLHTYNT 405

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    +   +  A +I + M     +PT  +  + ++ YG++GD   A   F+ M   G
Sbjct: 406 LICGLLRVHRLDDALEIFDNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKG 465

Query: 428 HKPD-DRCTASM--IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
             P+   C AS+  +A  G+     +A  +   L+  G  P   TY +++    ++  I+
Sbjct: 466 IAPNIVACNASLYSLAKAGRDR---EAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEID 522

Query: 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFER 542
           EA +LL ++ E    P   +  SL +   +A    +A +   F+  K+ ++ P    +  
Sbjct: 523 EAIKLLSEMVENCCEPDVIVVNSLINTLYKADRVDEAWKM--FMRMKEMKLKPTVVTYNT 580

Query: 543 IINGLLAGGFLQDA 556
           ++ GL   G +Q+A
Sbjct: 581 LLAGLGKNGKIQEA 594



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 71/313 (22%), Positives = 141/313 (45%), Gaps = 11/313 (3%)

Query: 263  LIDAHAKENCLEDAERILKKMNEN-GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSH 321
            +I    K N    A  + +K  ++ G+ P + T  +L+    +A  ++ A++ F  +++ 
Sbjct: 757  IIRYSFKHNNASGARMLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKNT 816

Query: 322  GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGA 381
            G  PD   YN ++ AY  +G+      +   M     E +   +  ++    + G+V  A
Sbjct: 817  GCIPDVATYNFLLDAYGKSGKIDELFEIYKEMSAHECEPNTITHNIVISGLVKAGNVDDA 876

Query: 382  GQI-TNIMRIEEFQPTLESCTL--LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
              +  ++M   +F PT  +CT   L++   ++G   +A+  F+ M   G +P+      +
Sbjct: 877  LDLYYDLMSDRDFSPT--ACTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCRPNCAIYNIL 934

Query: 439  IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
            I  +GK    D A  L   + K+G  P   TY+VLVD L  +  ++E      ++ E G 
Sbjct: 935  INGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFRELKESGL 994

Query: 499  APPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ-MGPD--DFERIINGLLAGGFLQD 555
             P       + +   +    ++AL  + F E KK + + PD   +  +I  L   G +++
Sbjct: 995  NPDVVCYNLIINGLGKFHRLEEAL--VLFNEMKKSRGITPDLYTYNSLILNLGIAGMVEE 1052

Query: 556  AQRVHGLMEAQGF 568
            A +++  ++  G 
Sbjct: 1053 AGKIYNEIQRAGL 1065



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 75/343 (21%), Positives = 129/343 (37%), Gaps = 14/343 (4%)

Query: 249 SEESFQTNVRDYSKLIDAHAKENC--LEDAERILKKMNENGIVPDIV----------TST 296
           S  S+  +V   S L+  H  E C  + +A R+  K+ E   V D++          T  
Sbjct: 102 SSFSYFKSVAGNSNLV--HTTETCNYMLEALRVDGKIEEMAYVFDLMQKRIIKRDTNTYL 159

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
            +    S  G L +A  A   +R  GF  +   YN +I   + +      M +   MI  
Sbjct: 160 TIFKCLSVKGGLRQAPFALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILD 219

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
           G   S + Y +L+    +  D+     +   M     +P + + T+ +   G+AG  ++A
Sbjct: 220 GFRPSLQTYSSLMVGLGKRRDIESVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEA 279

Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476
                 M   G  PD      +I A      LD A  +  +++    +P   TY  L+D 
Sbjct: 280 YEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFAKMKTGRHKPDRVTYITLLDR 339

Query: 477 LGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG 536
               + ++   Q   ++ + G  P       L D   +AG   +A   L  +  +     
Sbjct: 340 FSDNRDLDSVNQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFAKLDVMRDQGILPN 399

Query: 537 PDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
              +  +I GLL    L DA  +   ME+ G   +    +  I
Sbjct: 400 LHTYNTLICGLLRVHRLDDALEIFDNMESLGVKPTAYTYIVFI 442



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 96/225 (42%), Gaps = 1/225 (0%)

Query: 247  VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
            ++S+  F      Y  LID  +K   L +A+++ + M++ G  P+     +L++ + KAG
Sbjct: 883  LMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAG 942

Query: 307  NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
              D A   F+ +   G +PD K Y+ ++      G+   G+     +  SG+      Y 
Sbjct: 943  EADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFRELKESGLNPDVVCYN 1002

Query: 367  ALLRSFAQCGDVRGAGQITNIMRIEE-FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
             ++    +   +  A  + N M+      P L +   L+   G AG  ++A   ++ + R
Sbjct: 1003 LIINGLGKFHRLEEALVLFNEMKKSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQR 1062

Query: 426  LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATY 470
             G +P+     ++I  Y      + A  +   +   GF P   TY
Sbjct: 1063 AGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTY 1107


>gi|255560884|ref|XP_002521455.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539354|gb|EEF40945.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 623

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 111/242 (45%)

Query: 263 LIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG 322
           L++   K N ++   ++ K+M   GI P+  T  +L H++ + G++D+  +  E +   G
Sbjct: 220 LLNGLLKLNRIDQCWQVYKEMARVGIHPNSYTFNILTHVFCQDGDVDKVNDFLERMEEEG 279

Query: 323 FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAG 382
           F+PD   YN++I  Y   G+      L  +M    +      Y AL+    + G VR A 
Sbjct: 280 FEPDIVTYNTLISCYCRKGRLDDAFYLYRIMYRRNVLPDLVSYTALMNGLCKEGKVREAH 339

Query: 383 QITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAY 442
           Q+ + M      P + S   L+  Y + G   ++RS    MI  G  PD      +I  Y
Sbjct: 340 QLFHRMIHRGLNPDIVSFNTLICGYCKEGKMRESRSLLHEMIGSGICPDKVTCQVLIEGY 399

Query: 443 GKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPF 502
            K+  +  ALNL++ELE+ G       Y  L+  +        A+ LL +IS+ G  P  
Sbjct: 400 RKEARIVSALNLVVELERFGVPISTDIYDYLMVSICEEGRPFAAKSLLQRISQRGYVPGV 459

Query: 503 KI 504
           +I
Sbjct: 460 EI 461



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 123/269 (45%), Gaps = 4/269 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + EE F+ ++  Y+ LI  + ++  L+DA  + + M    ++PD+V+ T L++   K G 
Sbjct: 275 MEEEGFEPDIVTYNTLISCYCRKGRLDDAFYLYRIMYRRNVLPDLVSYTALMNGLCKEGK 334

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A + F  +   G  PD   +N++I  Y   G+ +   SL+  MI SGI   +     
Sbjct: 335 VREAHQLFHRMIHRGLNPDIVSFNTLICGYCKEGKMRESRSLLHEMIGSGICPDKVTCQV 394

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLES--CTLLVEAYGQAGDPDQARSNFDYMIR 425
           L+  + +  + R    +  ++ +E F   + +     L+ +  + G P  A+S    + +
Sbjct: 395 LIEGYRK--EARIVSALNLVVELERFGVPISTDIYDYLMVSICEEGRPFAAKSLLQRISQ 452

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
            G+ P       +I +  K + +  AL +  E+     +P   TY  L+  L R     E
Sbjct: 453 RGYVPGVEIYNKLIESLCKSDSIADALLVKSEMGHRNIKPSAITYKALICCLCRTSRSME 512

Query: 486 AEQLLGKISELGEAPPFKIQVSLCDMYAR 514
           AE L+ ++ + G  P   I  +L  +Y +
Sbjct: 513 AESLMEEMLQSGMLPDPDICRALMHVYCK 541



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 93/219 (42%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           ++  ++ LI  + KE  + ++  +L +M  +GI PD VT  VL+  Y K   +  A    
Sbjct: 353 DIVSFNTLICGYCKEGKMRESRSLLHEMIGSGICPDKVTCQVLIEGYRKEARIVSALNLV 412

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             L   G      +Y+ ++++    G+P    SL+  +   G     EIY  L+ S  + 
Sbjct: 413 VELERFGVPISTDIYDYLMVSICEEGRPFAAKSLLQRISQRGYVPGVEIYNKLIESLCKS 472

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
             +  A  + + M     +P+  +   L+    +     +A S  + M++ G  PD    
Sbjct: 473 DSIADALLVKSEMGHRNIKPSAITYKALICCLCRTSRSMEAESLMEEMLQSGMLPDPDIC 532

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
            +++  Y K+  + KA  LL    K+       +Y  LV
Sbjct: 533 RALMHVYCKERDIGKAETLLQTFAKEFQIFDSESYNTLV 571



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 53/274 (19%), Positives = 103/274 (37%), Gaps = 45/274 (16%)

Query: 237 TQLYFKVAELVLSEESFQT---NVRD-------YSKLIDAHAKENCLEDAERILKKMNEN 286
           T+L   V +   +E+ FQT     +D       +  L+ A+ +E  +++     +K+ E 
Sbjct: 149 TELIKLVKDCSFNEDVFQTLLFCCQDCNWDPVIFDMLVKAYVREGMIKEGFTTFRKIVEV 208

Query: 287 GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLG 346
           G VP +++   L++   K   +D+  + ++ +   G  P+   +N  I+ +V        
Sbjct: 209 GCVPSVISCNCLLNGLLKLNRIDQCWQVYKEMARVGIHPNSYTFN--ILTHV-------- 258

Query: 347 MSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA 406
                                    F Q GDV         M  E F+P + +   L+  
Sbjct: 259 -------------------------FCQDGDVDKVNDFLERMEEEGFEPDIVTYNTLISC 293

Query: 407 YGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG 466
           Y + G  D A   +  M R    PD     +++    K+  + +A  L   +   G  P 
Sbjct: 294 YCRKGRLDDAFYLYRIMYRRNVLPDLVSYTALMNGLCKEGKVREAHQLFHRMIHRGLNPD 353

Query: 467 PATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
             ++  L+    +   + E+  LL ++   G  P
Sbjct: 354 IVSFNTLICGYCKEGKMRESRSLLHEMIGSGICP 387



 Score = 38.9 bits (89), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 23/99 (23%), Positives = 47/99 (47%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  LI    + +   +AE ++++M ++G++PD      L+H+Y K  ++ +A+   ++  
Sbjct: 497 YKALICCLCRTSRSMEAESLMEEMLQSGMLPDPDICRALMHVYCKERDIGKAETLLQTFA 556

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
                 D + YN+++  Y         M L D M+  G 
Sbjct: 557 KEFQIFDSESYNTLVKTYCEDADATRLMELQDRMLKVGF 595


>gi|410109885|gb|AFV61022.1| pentatricopeptide repeat-containing protein 11, partial
           [Coelocarpum swinglei]
          Length = 429

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 120/261 (45%), Gaps = 6/261 (2%)

Query: 218 LQPSRIDWINLLD---RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           L+PS + +  L++   RL + +     K A   +     Q +V  YS LI+   KE+ ++
Sbjct: 171 LRPSVVSFNTLMNGYIRLGDLDEGFRLKSA---MHASGVQPDVYTYSVLINGLCKESKMD 227

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           DA  +  +M + G+VP+ VT T L+  + K G +D A E ++ + S    PD   YN++I
Sbjct: 228 DANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQSLSPDLITYNTLI 287

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
                 G  K    L+D M   G++  +  Y  L+    + GD+  A +    M  E  +
Sbjct: 288 YGLCKKGDLKQAQDLIDEMRMKGLKPDKISYTTLIDGCCKEGDLETAFEHRKRMIQENIR 347

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
               + T L+    Q G    A      M+ +G +PD      +I  + KK  +     L
Sbjct: 348 LDDVAYTALISGLCQEGRSIDAEKMLREMLSVGLRPDTGTYTMIINEFCKKGDVWTGSKL 407

Query: 455 LLELEKDGFEPGPATYTVLVD 475
           L E+++DG  P   TY VL++
Sbjct: 408 LKEMQRDGHVPSVVTYNVLMN 428



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 62/292 (21%), Positives = 140/292 (47%), Gaps = 6/292 (2%)

Query: 214 WKELLQ---PSRIDWINLLDR--LREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHA 268
           +KE+L+   P+ + + N+L     +E + ++   V +  +++   + +V  ++ L++ + 
Sbjct: 128 YKEILECGYPASLYFFNILMHRFCKEGDIRVALSVFD-AITKWGLRPSVVSFNTLMNGYI 186

Query: 269 KENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKK 328
           +   L++  R+   M+ +G+ PD+ T +VL++   K   +D A E F+ +   G  P+  
Sbjct: 187 RLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGV 246

Query: 329 VYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIM 388
            + ++I  +   G+  L M +   M++  +      Y  L+    + GD++ A  + + M
Sbjct: 247 TFTTLIDGHCKNGRVDLAMEVYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEM 306

Query: 389 RIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLL 448
           R++  +P   S T L++   + GD + A  +   MI+   + DD    ++I+   ++   
Sbjct: 307 RMKGLKPDKISYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRS 366

Query: 449 DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
             A  +L E+   G  P   TYT++++   +   +    +LL ++   G  P
Sbjct: 367 IDAEKMLREMLSVGLRPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVP 418



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 58/280 (20%), Positives = 115/280 (41%), Gaps = 3/280 (1%)

Query: 240 YFKVAELV---LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTST 296
           YFK+       + E  +  ++  ++ L+    KE  +  A  +   + + G+ P +V+  
Sbjct: 120 YFKLVWXFYKEILECGYPASLYFFNILMHRFCKEGDIRVALSVFDAITKWGLRPSVVSFN 179

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
            L++ Y + G+LD       ++ + G QPD   Y+ +I       +      L D M+  
Sbjct: 180 TLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDK 239

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
           G+  +   +  L+    + G V  A ++   M  +   P L +   L+    + GD  QA
Sbjct: 240 GLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQA 299

Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476
           +   D M   G KPD     ++I    K+  L+ A      + ++        YT L+  
Sbjct: 300 QDLIDEMRMKGLKPDKISYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISG 359

Query: 477 LGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
           L +     +AE++L ++  +G  P       + + + + G
Sbjct: 360 LCQEGRSIDAEKMLREMLSVGLRPDTGTYTMIINEFCKKG 399



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/317 (18%), Positives = 134/317 (42%), Gaps = 2/317 (0%)

Query: 244 AELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGI-VPDIVTSTVLVHMY 302
           A ++ ++ + ++++  +S LI A+ +   L DA    +   E+   VP      VL H+ 
Sbjct: 57  AAILETQGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHL- 115

Query: 303 SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE 362
            K          ++ +   G+      +N ++  +   G  ++ +S+ D +   G+  S 
Sbjct: 116 MKLKYFKLVWXFYKEILECGYPASLYFFNILMHRFCKEGDIRVALSVFDAITKWGLRPSV 175

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
             +  L+  + + GD+    ++ + M     QP + + ++L+    +    D A   FD 
Sbjct: 176 VSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDE 235

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
           M+  G  P+     ++I  + K   +D A+ +  ++      P   TY  L+  L +   
Sbjct: 236 MLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQSLSPDLITYNTLIYGLCKKGD 295

Query: 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFER 542
           + +A+ L+ ++   G  P      +L D   + G  + A +    +  +  ++    +  
Sbjct: 296 LKQAQDLIDEMRMKGLKPDKISYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTA 355

Query: 543 IINGLLAGGFLQDAQRV 559
           +I+GL   G   DA+++
Sbjct: 356 LISGLCQEGRSIDAEKM 372


>gi|356560325|ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Glycine max]
          Length = 746

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 60/293 (20%), Positives = 125/293 (42%), Gaps = 1/293 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N   Y+ LID   K    + A  + ++MNE G+ P+++T   LV    K G + RA E F
Sbjct: 392 NTVTYNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFF 451

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             ++  G + +   Y ++I A+         M   + M++SG      +Y +L+      
Sbjct: 452 NEMKGKGLKGNAATYTALISAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGLCIA 511

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A  + + +++  F        +L+  + +    ++       M   G KPD    
Sbjct: 512 GRMNDASVVVSKLKLAGFSLDRSCYNVLISGFCKKKKLERVYELLTEMEETGVKPDTITY 571

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I+  GK      A  ++ ++ K+G  P   TY  ++      + ++E  ++ G++  
Sbjct: 572 NTLISYLGKTGDFATASKVMEKMIKEGLRPSVVTYGAIIHAYCSKKNVDEGMKIFGEMCS 631

Query: 496 LGEAPPFKIQVS-LCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
             + PP  +  + L D   R     +A+  +  ++ K+ +     +  I+ G+
Sbjct: 632 TSKVPPNTVIYNILIDALCRNNDVDRAISLMEDMKVKRVRPNTTTYNAILKGV 684



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 128/302 (42%), Gaps = 7/302 (2%)

Query: 194 ITDKILSLEKEEDPSPLLAEWK--ELLQPSRIDWINLLDRLREQNTQLYFKVAELV--LS 249
           + D +  + KEED   LL E K   + +P+ + +  L+D   +     + +  EL   ++
Sbjct: 363 LIDGLCKVGKEEDGLSLLEEMKMGNINRPNTVTYNCLIDGFFKAGN--FDRAHELFRQMN 420

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           EE  Q NV   + L+D   K   +  A     +M   G+  +  T T L+  +    N++
Sbjct: 421 EEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAATYTALISAFCGVNNIN 480

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
           RA + FE + S G  PD  VY S+I     AG+      +V  +  +G       Y  L+
Sbjct: 481 RAMQCFEEMLSSGCSPDAVVYYSLISGLCIAGRMNDASVVVSKLKLAGFSLDRSCYNVLI 540

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
             F +   +    ++   M     +P   +   L+   G+ GD   A    + MI+ G +
Sbjct: 541 SGFCKKKKLERVYELLTEMEETGVKPDTITYNTLISYLGKTGDFATASKVMEKMIKEGLR 600

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLEL-EKDGFEPGPATYTVLVDWLGRLQLINEAEQ 488
           P      ++I AY  K  +D+ + +  E+       P    Y +L+D L R   ++ A  
Sbjct: 601 PSVVTYGAIIHAYCSKKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDALCRNNDVDRAIS 660

Query: 489 LL 490
           L+
Sbjct: 661 LM 662



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 99/244 (40%), Gaps = 40/244 (16%)

Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG------FQPDKKVYNS 332
           +L +M +  I P +VT  +LV+   KA  +D A + F+ LR  G       +PD  ++N+
Sbjct: 303 LLAEMEKRKIRPSVVTFGILVNHLCKARRIDEALQVFDRLRGKGGSNWVGVEPDVVLFNT 362

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I      G+ + G+SL++ M    I R                                
Sbjct: 363 LIDGLCKVGKEEDGLSLLEEMKMGNINR-------------------------------- 390

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P   +   L++ + +AG+ D+A   F  M   G +P+     +++    K   + +A+
Sbjct: 391 --PNTVTYNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAV 448

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
               E++  G +   ATYT L+     +  IN A Q   ++   G +P   +  SL    
Sbjct: 449 EFFNEMKGKGLKGNAATYTALISAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGL 508

Query: 513 ARAG 516
             AG
Sbjct: 509 CIAG 512



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/287 (20%), Positives = 113/287 (39%), Gaps = 42/287 (14%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKM------NENGIVPDIVTSTVLVHMYSKAGNLD 309
           +V  +  L++   K   +++A ++  ++      N  G+ PD+V    L+    K G  +
Sbjct: 315 SVVTFGILVNHLCKARRIDEALQVFDRLRGKGGSNWVGVEPDVVLFNTLIDGLCKVGKEE 374

Query: 310 RAKEAFESLRSHGF-QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLAL 368
                 E ++     +P+   YN +I  +  AG       L   M   G++ +      L
Sbjct: 375 DGLSLLEEMKMGNINRPNTVTYNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNVITLNTL 434

Query: 369 LRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH 428
           +    + G V  A +  N M+ +  +    + T L+ A+    + ++A   F+ M+  G 
Sbjct: 435 VDGLCKHGRVHRAVEFFNEMKGKGLKGNAATYTALISAFCGVNNINRAMQCFEEMLSSGC 494

Query: 429 KPD----------------------------------DR-CTASMIAAYGKKNLLDKALN 453
            PD                                  DR C   +I+ + KK  L++   
Sbjct: 495 SPDAVVYYSLISGLCIAGRMNDASVVVSKLKLAGFSLDRSCYNVLISGFCKKKKLERVYE 554

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
           LL E+E+ G +P   TY  L+ +LG+      A +++ K+ + G  P
Sbjct: 555 LLTEMEETGVKPDTITYNTLISYLGKTGDFATASKVMEKMIKEGLRP 601



 Score = 38.9 bits (89), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 74/173 (42%), Gaps = 16/173 (9%)

Query: 187 ITGKCKLITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKVAE 245
           I+G CK         +K E    LL E +E  ++P  I +  L+  L +      F  A 
Sbjct: 540 ISGFCKK--------KKLERVYELLTEMEETGVKPDTITYNTLISYLGKTGD---FATAS 588

Query: 246 LVLSE---ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVP-DIVTSTVLVHM 301
            V+ +   E  + +V  Y  +I A+  +  +++  +I  +M     VP + V   +L+  
Sbjct: 589 KVMEKMIKEGLRPSVVTYGAIIHAYCSKKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDA 648

Query: 302 YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMI 354
             +  ++DRA    E ++    +P+   YN+++    +         L+D M+
Sbjct: 649 LCRNNDVDRAISLMEDMKVKRVRPNTTTYNAILKGVRDKKMLHKAFELMDRMV 701


>gi|452825793|gb|EME32788.1| mitochondrial protein translocase, MPT family [Galdieria
           sulphuraria]
          Length = 821

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 144/319 (45%), Gaps = 19/319 (5%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E + + N   YS LI A  +   +E A  I ++M    IVPD+     L+  + K   
Sbjct: 449 MKEANVKPNNYCYSSLISAFCRAGYVERALAIFEEMTHERIVPDVFAFNALIDGFGKLRQ 508

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGM----SLVDMMITSGIERSEE 363
           +D+A E ++ +R    QPD+  +N++I A   +G+ K  +    ++ DM    G+     
Sbjct: 509 VDKAFEIYDRMRKLQIQPDRITFNALISA---SGKAKNSIRALEAMGDMTEIYGLTPDRH 565

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA--YGQAGDPDQARSN-- 419
            Y AL+ +  + GD   A ++   MR +  +P    CT+   A  YG +   D A S   
Sbjct: 566 SYNALIDACGKSGDFTKAYEVFEEMRTKGIRP----CTVTFNALIYGASRSHDLAASFKI 621

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
            D M++ G  PD     ++I+A  ++  L  A  +L + ++ G  P   T+   +D +G+
Sbjct: 622 VDLMLQEGLNPDAYTMNTLISACNRRQDLSTAFEVLEKFKQLGVHPDNVTFNTFIDAVGK 681

Query: 480 LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD 539
           L    +  +LL ++   G +P      ++     R G  K  L   GF    ++++ PD 
Sbjct: 682 LDSSEKMFELLSEMESRGISPSKVTLNTIVGCCGRRG--KIDLMERGFHMFHEKRLEPDS 739

Query: 540 --FERIINGLLAGGFLQDA 556
             F  +I   ++   L  A
Sbjct: 740 VTFSLLIENYVSHHLLDKA 758



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 122/289 (42%), Gaps = 3/289 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           ++ E    +V  ++ LID   K   ++ A  I  +M +  I PD +T   L+    KA N
Sbjct: 484 MTHERIVPDVFAFNALIDGFGKLRQVDKAFEIYDRMRKLQIQPDRITFNALISASGKAKN 543

Query: 308 LDRAKEAFESLRS-HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
             RA EA   +   +G  PD+  YN++I A   +G       + + M T GI      + 
Sbjct: 544 SIRALEAMGDMTEIYGLTPDRHSYNALIDACGKSGDFTKAYEVFEEMRTKGIRPCTVTFN 603

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           AL+   ++  D+  + +I ++M  E   P   +   L+ A  +  D   A    +   +L
Sbjct: 604 ALIYGASRSHDLAASFKIVDLMLQEGLNPDAYTMNTLISACNRRQDLSTAFEVLEKFKQL 663

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G  PD+    + I A GK +  +K   LL E+E  G  P   T   +V   GR   I+  
Sbjct: 664 GVHPDNVTFNTFIDAVGKLDSSEKMFELLSEMESRGISPSKVTLNTIVGCCGRRGKIDLM 723

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQM 535
           E+      E    P       L + Y    +  KA+  + +   K++Q+
Sbjct: 724 ERGFHMFHEKRLEPDSVTFSLLIENYVSHHLLDKAV--IAYHNCKRQQL 770



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 143/321 (44%), Gaps = 17/321 (5%)

Query: 262 KLIDAHAKENC--LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           K++    + +C  +  A  +L++M   G +PD+VT   L+  +SK    +RA + F+ ++
Sbjct: 391 KIVSRCKRNDCGGITRAMSLLREMATKGCIPDVVTYATLIDAFSKRMEPERALKLFQEMK 450

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
               +P+   Y+S+I A+  AG  +  +++ + M    I      + AL+  F +   V 
Sbjct: 451 EANVKPNNYCYSSLISAFCRAGYVERALAIFEEMTHERIVPDVFAFNALIDGFGKLRQVD 510

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL-GHKPDDRCTASM 438
            A +I + MR  + QP   +   L+ A G+A +  +A      M  + G  PD     ++
Sbjct: 511 KAFEIYDRMRKLQIQPDRITFNALISASGKAKNSIRALEAMGDMTEIYGLTPDRHSYNAL 570

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           I A GK     KA  +  E+   G  P   T+  L+    R   +  + +++  + + G 
Sbjct: 571 IDACGKSGDFTKAYEVFEEMRTKGIRPCTVTFNALIYGASRSHDLAASFKIVDLMLQEGL 630

Query: 499 APPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG--PDD--FERIINGLLAGGFLQ 554
            P      +L     R      A + L     K +Q+G  PD+  F   I+ +   G L 
Sbjct: 631 NPDAYTMNTLISACNRRQDLSTAFEVL----EKFKQLGVHPDNVTFNTFIDAV---GKLD 683

Query: 555 DAQRVHGL---MEAQGFAASE 572
            ++++  L   ME++G + S+
Sbjct: 684 SSEKMFELLSEMESRGISPSK 704



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 142/339 (41%), Gaps = 38/339 (11%)

Query: 246 LVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKA 305
           L +     + +V  +S  I A  +     +AER L  M E  I P+I T + L+    K 
Sbjct: 301 LSMPSNEVKRDVASWSIYITALGRLERYSEAERSLIWMREEHIQPNIYTYSALIETLGKG 360

Query: 306 GNLDRAKEAFESL-RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
           G   RA   F  + R     P+   YN++I       +   G          GI R+   
Sbjct: 361 GLCVRALSQFRRMSRIDNIAPNTVTYNAVIKIVSRCKRNDCG----------GITRA--- 407

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
            ++LLR  A  G +                P + +   L++A+ +  +P++A   F  M 
Sbjct: 408 -MSLLREMATKGCI----------------PDVVTYATLIDAFSKRMEPERALKLFQEMK 450

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
               KP++ C +S+I+A+ +   +++AL +  E+  +   P    +  L+D  G+L+ ++
Sbjct: 451 EANVKPNNYCYSSLISAFCRAGYVERALAIFEEMTHERIVPDVFAFNALIDGFGKLRQVD 510

Query: 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG--PD--DF 540
           +A ++  ++ +L   P    +++   + + +G  K +++AL  +    E  G  PD   +
Sbjct: 511 KAFEIYDRMRKLQIQPD---RITFNALISASGKAKNSIRALEAMGDMTEIYGLTPDRHSY 567

Query: 541 ERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
             +I+     G    A  V   M  +G         ALI
Sbjct: 568 NALIDACGKSGDFTKAYEVFEEMRTKGIRPCTVTFNALI 606


>gi|414881815|tpg|DAA58946.1| TPA: hypothetical protein ZEAMMB73_360564 [Zea mays]
          Length = 792

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 97/226 (42%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + ++    N+  Y+  ID + + NC + A ++L  +  +GI PDI      +  + K GN
Sbjct: 561 MRKKGITPNIVTYTSFIDGYCRTNCCDLAVKLLIYVRRDGIQPDIAAYNAFIDTFCKQGN 620

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           + RA      L   G  PD  VYNS +  Y N             MI   +    EIY  
Sbjct: 621 MSRALHFLVLLLKDGLTPDVTVYNSFVTGYKNLKMMAEASKFYYSMIKQRVVADTEIYTT 680

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+  F++ G+V  A ++ + M      P  ++ T L     ++GD D A+   D M RL 
Sbjct: 681 LIDGFSKVGNVAFALELYSEMMANHVIPDDKTFTALTHGLCRSGDIDGAKRLLDDMRRLD 740

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVL 473
             P+      +I A  +   L +A  L  E+   G  P   TY +L
Sbjct: 741 VSPNIVTYNMLINACVRDGKLQEAFQLHDEMLSSGVVPDDTTYDIL 786



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 107/257 (41%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y  LI    K   L +A  +  KM E G+ P IVT   L+  Y + G +D A + +
Sbjct: 394 DVFTYGCLIHWLCKHQKLHEAVNLWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEALKLY 453

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   GF P++  Y +++  Y+         +L++ M  +G+   +  Y  L+      
Sbjct: 454 SEMPDKGFPPNEVTYTTLMKGYIKKKAFDNAYALLNEMRQNGVSCGDYTYNILINGLYMV 513

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
             V    ++      E F PT  +   ++  + +AG    A   +  M + G  P+    
Sbjct: 514 NRVCEVDEMLKRFLSEGFVPTTMTYNSIINGFVKAGMMGSAFGMYRQMRKKGITPNIVTY 573

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            S I  Y + N  D A+ LL+ + +DG +P  A Y   +D   +   ++ A   L  + +
Sbjct: 574 TSFIDGYCRTNCCDLAVKLLIYVRRDGIQPDIAAYNAFIDTFCKQGNMSRALHFLVLLLK 633

Query: 496 LGEAPPFKIQVSLCDMY 512
            G  P   +  S    Y
Sbjct: 634 DGLTPDVTVYNSFVTGY 650



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 70/314 (22%), Positives = 125/314 (39%), Gaps = 39/314 (12%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + ++ F  N   Y+ L+  + K+   ++A  +L +M +NG+     T  +L++       
Sbjct: 456 MPDKGFPPNEVTYTTLMKGYIKKKAFDNAYALLNEMRQNGVSCGDYTYNILINGLYMVNR 515

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +    E  +   S GF P    YNS+I  +V AG          M    G+ R       
Sbjct: 516 VCEVDEMLKRFLSEGFVPTTMTYNSIINGFVKAGM---------MGSAFGMYRQ------ 560

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
                               MR +   P + + T  ++ Y +    D A     Y+ R G
Sbjct: 561 --------------------MRKKGITPNIVTYTSFIDGYCRTNCCDLAVKLLIYVRRDG 600

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            +PD     + I  + K+  + +AL+ L+ L KDG  P    Y   V     L+++ EA 
Sbjct: 601 IQPDIAAYNAFIDTFCKQGNMSRALHFLVLLLKDGLTPDVTVYNSFVTGYKNLKMMAEAS 660

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIIN 545
           +    + +       +I  +L D +++ G    AL+   + E     + PDD  F  + +
Sbjct: 661 KFYYSMIKQRVVADTEIYTTLIDGFSKVGNVAFALEL--YSEMMANHVIPDDKTFTALTH 718

Query: 546 GLLAGGFLQDAQRV 559
           GL   G +  A+R+
Sbjct: 719 GLCRSGDIDGAKRL 732



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/251 (21%), Positives = 103/251 (41%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
            E F      Y+ +I+   K   +  A  + ++M + GI P+IVT T  +  Y +    D
Sbjct: 528 SEGFVPTTMTYNSIINGFVKAGMMGSAFGMYRQMRKKGITPNIVTYTSFIDGYCRTNCCD 587

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A +    +R  G QPD   YN+ I  +   G     +  + +++  G+     +Y + +
Sbjct: 588 LAVKLLIYVRRDGIQPDIAAYNAFIDTFCKQGNMSRALHFLVLLLKDGLTPDVTVYNSFV 647

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
             +     +  A +    M  +      E  T L++ + + G+   A   +  M+     
Sbjct: 648 TGYKNLKMMAEASKFYYSMIKQRVVADTEIYTTLIDGFSKVGNVAFALELYSEMMANHVI 707

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PDD+   ++     +   +D A  LL ++ +    P   TY +L++   R   + EA QL
Sbjct: 708 PDDKTFTALTHGLCRSGDIDGAKRLLDDMRRLDVSPNIVTYNMLINACVRDGKLQEAFQL 767

Query: 490 LGKISELGEAP 500
             ++   G  P
Sbjct: 768 HDEMLSSGVVP 778



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/219 (20%), Positives = 95/219 (43%), Gaps = 2/219 (0%)

Query: 215 KELLQPSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCL 273
           K+ + P+ + + + +D   R     L  K+  + +  +  Q ++  Y+  ID   K+  +
Sbjct: 563 KKGITPNIVTYTSFIDGYCRTNCCDLAVKLL-IYVRRDGIQPDIAAYNAFIDTFCKQGNM 621

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
             A   L  + ++G+ PD+      V  Y     +  A + + S+       D ++Y ++
Sbjct: 622 SRALHFLVLLLKDGLTPDVTVYNSFVTGYKNLKMMAEASKFYYSMIKQRVVADTEIYTTL 681

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           I  +   G     + L   M+ + +   ++ + AL     + GD+ GA ++ + MR  + 
Sbjct: 682 IDGFSKVGNVAFALELYSEMMANHVIPDDKTFTALTHGLCRSGDIDGAKRLLDDMRRLDV 741

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            P + +  +L+ A  + G   +A    D M+  G  PDD
Sbjct: 742 SPNIVTYNMLINACVRDGKLQEAFQLHDEMLSSGVVPDD 780



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 96/220 (43%), Gaps = 1/220 (0%)

Query: 282 KMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAG 341
           +M   G+VPD  + T L+   +   +   A   F+ +R  G   D K+Y+ +I A V  G
Sbjct: 140 RMVTRGVVPDAKSRTDLLVTTALGASAADALTLFDEMRGKGCYADAKMYDVVIRACVRGG 199

Query: 342 QPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCT 401
                + L D M  +G++  E +Y   +    +  D   A Q+   MR   F+P   + +
Sbjct: 200 MHCDAVRLFDEMAGAGVKPDERVYAITISGLCKLRDADRALQVLGKMREAGFEPWELTYS 259

Query: 402 LLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIA-AYGKKNLLDKALNLLLELEK 460
            +V+   +    D+A    D M+    K  D   A+M+   Y     + KAL+L  E+  
Sbjct: 260 SVVDVLVKVRRMDEALRLKDQMLLATGKKMDVVLATMLMHGYCLNGEVGKALDLFDEVVS 319

Query: 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
           DG  P   TY VL+       + +E  +L  ++ E G  P
Sbjct: 320 DGVTPTNVTYGVLIKGCDAEGMTDETYKLCRQMIEQGLLP 359



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 56/112 (50%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LID  +K   +  A  +  +M  N ++PD  T T L H   ++G++D AK   + +R
Sbjct: 678 YTTLIDGFSKVGNVAFALELYSEMMANHVIPDDKTFTALTHGLCRSGDIDGAKRLLDDMR 737

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
                P+   YN +I A V  G+ +    L D M++SG+   +  Y  L R+
Sbjct: 738 RLDVSPNIVTYNMLINACVRDGKLQEAFQLHDEMLSSGVVPDDTTYDILPRT 789



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 109/265 (41%), Gaps = 2/265 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  +I A  +     DA R+  +M   G+ PD     + +    K  + DRA +    +R
Sbjct: 188 YDVVIRACVRGGMHCDAVRLFDEMAGAGVKPDERVYAITISGLCKLRDADRALQVLGKMR 247

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVD-MMITSGIERSEEIYLALLRSFAQCGDV 378
             GF+P +  Y+S++   V   +    + L D M++ +G +    +   L+  +   G+V
Sbjct: 248 EAGFEPWELTYSSVVDVLVKVRRMDEALRLKDQMLLATGKKMDVVLATMLMHGYCLNGEV 307

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             A  + + +  +   PT  +  +L++     G  D+       MI  G  P       +
Sbjct: 308 GKALDLFDEVVSDGVTPTNVTYGVLIKGCDAEGMTDETYKLCRQMIEQGLLPSTYEFNLV 367

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           I    +      A+  LL+L  D   P   TY  L+ WL + Q ++EA  L  K+ E G 
Sbjct: 368 IKGLLRDKRWKDAIG-LLKLVVDTGVPDVFTYGCLIHWLCKHQKLHEAVNLWDKMKEAGV 426

Query: 499 APPFKIQVSLCDMYARAGIEKKALQ 523
            P      SL   Y   G   +AL+
Sbjct: 427 KPSIVTYHSLLLGYCEKGRMDEALK 451


>gi|326522214|dbj|BAK04235.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 966

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 122/273 (44%), Gaps = 19/273 (6%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA- 314
           NV  Y+ L+ A+ K   L  A  I  +M  +   P+ +T + L+    KAG + +A E  
Sbjct: 521 NVVTYTALLHAYLKSKQLYQANDIFHRMVGDACYPNAITYSALIDGLCKAGEIQKACEVY 580

Query: 315 ---------------FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
                          FE   +    P+   Y +++     A +      L+D M+ +G E
Sbjct: 581 AKLIGTSDNIESDFYFEGKDTDTISPNVVTYGALVNGLCKAQKVSDAHDLLDAMLAAGCE 640

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
            ++ +Y AL+  F + G++  A ++   M    + P++ + T L++   + G  D A   
Sbjct: 641 PNQIVYDALVDGFCKVGEIDSAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKV 700

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
              M++    P+     +M+    K    +KALNLL  +EK G  P   TYT L+D LG+
Sbjct: 701 LSQMLKDSCNPNVVTYTAMVDGLCKTGETEKALNLLSLMEKKGCSPNVVTYTALIDGLGK 760

Query: 480 LQLINEAEQLLGKISELGEAP---PFKIQVSLC 509
              ++   +L  ++   G AP    ++I ++ C
Sbjct: 761 AGKVDAGLELFMQMKTKGCAPNYVTYRILINHC 793



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 90/395 (22%), Positives = 170/395 (43%), Gaps = 31/395 (7%)

Query: 203 KEEDPSPLLAEWKE------LLQPSRIDWINLLDRLREQNTQLYFKVAELVLSE---ESF 253
           +EE P+P L +  E      L+    ++ IN  +  R       F+ A  ++ E   + F
Sbjct: 389 REELPNPELLDLAEKVYEEMLVASCVLNKINTANFARCLCGVGKFEKAFQIVKEMMRKGF 448

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
             +   Y+K+I    +   ++ A  + ++M + G+ PD+ T T+L+  + KAG +++A+ 
Sbjct: 449 VPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTILIDSFCKAGLIEQAQS 508

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            F+ +RS G  P+   Y +++ AY+ + Q      +   M+      +   Y AL+    
Sbjct: 509 WFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDACYPNAITYSALIDGLC 568

Query: 374 QCGDVRGA--------GQITNIMR--------IEEFQPTLESCTLLVEAYGQAGDPDQAR 417
           + G+++ A        G   NI           +   P + +   LV    +A     A 
Sbjct: 569 KAGEIQKACEVYAKLIGTSDNIESDFYFEGKDTDTISPNVVTYGALVNGLCKAQKVSDAH 628

Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
              D M+  G +P+     +++  + K   +D A  + L + K G+ P   TYT L+D +
Sbjct: 629 DLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTKCGYLPSVHTYTSLIDRM 688

Query: 478 ---GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ 534
              GRL L   A ++L ++ +    P      ++ D   + G  +KAL  L  +E K   
Sbjct: 689 FKDGRLDL---AMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEKALNLLSLMEKKGCS 745

Query: 535 MGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
                +  +I+GL   G +     +   M+ +G A
Sbjct: 746 PNVVTYTALIDGLGKAGKVDAGLELFMQMKTKGCA 780



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 131/330 (39%), Gaps = 24/330 (7%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           +L  E F+ +    +++I    + +   +A   L +M  N  +P++VT   L+  + K  
Sbjct: 261 LLEREDFKLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSYIPNVVTYRTLLTGFLKKK 320

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            L   K     + + G  P   ++NS++  Y NA        L + M T G      +Y 
Sbjct: 321 QLGWCKRIINMMMTEGCNPSPSLFNSLVHTYCNAEDYAYAYKLFNRMNTCGCPPGYVVYN 380

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE-----SCTL-------LVEAYGQAGDPD 414
             +      G + G  ++ N   ++  +   E     SC L               G  +
Sbjct: 381 IFI------GSICGREELPNPELLDLAEKVYEEMLVASCVLNKINTANFARCLCGVGKFE 434

Query: 415 QARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
           +A      M+R G  PD      +I    +   +DKA  L  E++K G  P   TYT+L+
Sbjct: 435 KAFQIVKEMMRKGFVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTILI 494

Query: 475 DWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALG-FLEAKKE 533
           D   +  LI +A+    ++   G +P      +L   Y ++   K+  QA   F     +
Sbjct: 495 DSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKS---KQLYQANDIFHRMVGD 551

Query: 534 QMGPD--DFERIINGLLAGGFLQDAQRVHG 561
              P+   +  +I+GL   G +Q A  V+ 
Sbjct: 552 ACYPNAITYSALIDGLCKAGEIQKACEVYA 581



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 77/181 (42%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           ++   NV  Y  L++   K   + DA  +L  M   G  P+ +    LV  + K G +D 
Sbjct: 602 DTISPNVVTYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDS 661

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A+E F  +   G+ P    Y S+I      G+  L M ++  M+      +   Y A++ 
Sbjct: 662 AQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVD 721

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
              + G+   A  + ++M  +   P + + T L++  G+AG  D     F  M   G  P
Sbjct: 722 GLCKTGETEKALNLLSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTKGCAP 781

Query: 431 D 431
           +
Sbjct: 782 N 782



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 138/350 (39%), Gaps = 55/350 (15%)

Query: 194 ITDKILSLEKEEDPSPLL-AEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEES 252
           + + +   +K  D   LL A      +P++I +  L+D         + KV E+  ++E 
Sbjct: 614 LVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDG--------FCKVGEIDSAQEV 665

Query: 253 FQ--------TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK 304
           F          +V  Y+ LID   K+  L+ A ++L +M ++   P++VT T +V    K
Sbjct: 666 FLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCK 725

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
            G  ++A      +   G  P+   Y ++I     AG+   G+ L   M T G   +   
Sbjct: 726 TGETEKALNLLSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTKGCAPNYVT 785

Query: 365 YLALLRSFAQCG--------------------------DVRGAGQ--ITNIMRIEEFQ-- 394
           Y  L+      G                           V+G  +  + ++  +EE +  
Sbjct: 786 YRILINHCCAAGLLDDAHLLLDEMKQTHWPKYLQGYRTTVQGFSKRFLASLGLLEEMESH 845

Query: 395 ---PTLESCTLLVEAYGQAGDPDQARSNFDYMI----RLGHKPDDRCTASMIAAYGKKNL 447
              P      +L++++ +AG  + A      M+     L     D  T S+I A    + 
Sbjct: 846 DTAPIAPVYGMLIDSFSKAGRLETALELHKEMMEVSSSLNMASKDMHT-SLIQALCLSSQ 904

Query: 448 LDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           +++A+ L  E+ + G  P  + +  LV  L      NEA QL   I + G
Sbjct: 905 VEEAVALYSEMRRRGIVPDLSAFVCLVKGLIERNKWNEALQLCYGICQEG 954



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 108/251 (43%), Gaps = 15/251 (5%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTS--TVLVHMYSKAGNLDRAKEAFES 317
           Y  L +    E+    AER+L+++ E+    D++     VLV      G    A E    
Sbjct: 137 YDALAEVLGFEDPARTAERLLREIGEDD--RDVLGRLLNVLVRRCCLQGLWGEALEELGR 194

Query: 318 LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG--IERSEEIYLALLRSFAQ- 374
           L+  G++P    YN+++    +AGQ ++   +   M  SG  ++RS       + SFAQ 
Sbjct: 195 LKDFGYRPSAVTYNALVQVLASAGQVEMAFRVQKEMSASGFCMDRST------VGSFAQA 248

Query: 375 -CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
            C + R  G   +++  E+F+     CT ++    +A   ++A S    M    + P+  
Sbjct: 249 LCKEGRW-GDALDLLEREDFKLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSYIPNVV 307

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
              +++  + KK  L     ++  +  +G  P P+ +  LV      +    A +L  ++
Sbjct: 308 TYRTLLTGFLKKKQLGWCKRIINMMMTEGCNPSPSLFNSLVHTYCNAEDYAYAYKLFNRM 367

Query: 494 SELGEAPPFKI 504
           +  G  P + +
Sbjct: 368 NTCGCPPGYVV 378


>gi|255547341|ref|XP_002514728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546332|gb|EEF47834.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 517

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 148/339 (43%), Gaps = 12/339 (3%)

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           V+  + L++   K++  +    +   M    + P +VT  VLV    + G++ RAK    
Sbjct: 151 VQACNALLNGLLKKSSFDIMWELYNNMVSRRLFPTVVTYNVLVDACCRQGDVLRAKSLIS 210

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
            +   G +P   +Y ++I    +  +     S+   M  SG+  +   Y  L+  + +  
Sbjct: 211 EMVKKGIEPTVVIYTTLIHGLCSESKLMEAESMFRQMKDSGVFPNLYTYNVLMDGYCKTA 270

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
           +V+ A  +   M  +  QP + +  +L++A  +  +   AR  F  M + G  P+     
Sbjct: 271 NVKQALHLYQGMLDDGLQPNVVTFGILIDALCKVRELLAARRFFVQMAKFGVVPNVVVFN 330

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
           S+I  Y K     +A +LLLE+EK    P   TY++L+    RL  + EA+ +L ++ + 
Sbjct: 331 SLIDGYSKAGNCSEATDLLLEMEKFKISPDVFTYSILIKNACRLGTVEEADDILKRMEKE 390

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALG----FLEAKKEQMGPD--DFERIINGLLAG 550
           G      +  SL D Y + G  +KAL+       F + ++  + PD   +  ++ G L  
Sbjct: 391 GVPANSVVYNSLIDGYCKEGNMEKALEIFKATKFFSDMRRNGLRPDALAYAVMLQGHLNA 450

Query: 551 GFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQ 589
             + D   +H  M   G   +E      ++SQ   R  Q
Sbjct: 451 KHMADVMMLHADMIKMGIVPNE------VTSQVVRRGYQ 483



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 130/285 (45%), Gaps = 7/285 (2%)

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           VL+  +S+ G +D A   +  L+   F P  +  N+++   +      +   L + M++ 
Sbjct: 124 VLIIAFSEVGLVDEALRVY--LKVGAF-PAVQACNALLNGLLKKSSFDIMWELYNNMVSR 180

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
            +  +   Y  L+ +  + GDV  A  + + M  +  +PT+   T L+          +A
Sbjct: 181 RLFPTVVTYNVLVDACCRQGDVLRAKSLISEMVKKGIEPTVVIYTTLIHGLCSESKLMEA 240

Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476
            S F  M   G  P+      ++  Y K   + +AL+L   +  DG +P   T+ +L+D 
Sbjct: 241 ESMFRQMKDSGVFPNLYTYNVLMDGYCKTANVKQALHLYQGMLDDGLQPNVVTFGILIDA 300

Query: 477 LGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG 536
           L +++ +  A +   ++++ G  P   +  SL D Y++AG   +A   L  LE +K ++ 
Sbjct: 301 LCKVRELLAARRFFVQMAKFGVVPNVVVFNSLIDGYSKAGNCSEATDLL--LEMEKFKIS 358

Query: 537 PDDFER--IINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
           PD F    +I      G +++A  +   ME +G  A+  +  +LI
Sbjct: 359 PDVFTYSILIKNACRLGTVEEADDILKRMEKEGVPANSVVYNSLI 403



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/267 (20%), Positives = 125/267 (46%), Gaps = 14/267 (5%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFK--VAELVLSEESFQTNVRDYSKLIDAHAKENCLED 275
           L P+ + +  L+D    Q   L  K  ++E+V  ++  +  V  Y+ LI     E+ L +
Sbjct: 182 LFPTVVTYNVLVDACCRQGDVLRAKSLISEMV--KKGIEPTVVIYTTLIHGLCSESKLME 239

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           AE + ++M ++G+ P++ T  VL+  Y K  N+ +A   ++ +   G QP+   +  +I 
Sbjct: 240 AESMFRQMKDSGVFPNLYTYNVLMDGYCKTANVKQALHLYQGMLDDGLQPNVVTFGILID 299

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ- 394
           A     +          M   G+  +  ++ +L+  +++ G+   A  +  ++ +E+F+ 
Sbjct: 300 ALCKVRELLAARRFFVQMAKFGVVPNVVVFNSLIDGYSKAGNCSEATDL--LLEMEKFKI 357

Query: 395 -PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
            P + + ++L++   + G  ++A      M + G   +     S+I  Y K+  ++KAL 
Sbjct: 358 SPDVFTYSILIKNACRLGTVEEADDILKRMEKEGVPANSVVYNSLIDGYCKEGNMEKALE 417

Query: 454 L------LLELEKDGFEPGPATYTVLV 474
           +        ++ ++G  P    Y V++
Sbjct: 418 IFKATKFFSDMRRNGLRPDALAYAVML 444



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 93/224 (41%), Gaps = 6/224 (2%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  Y+ L+D + K   ++ A  + + M ++G+ P++VT  +L+    K   L  A+  F
Sbjct: 255 NLYTYNVLMDGYCKTANVKQALHLYQGMLDDGLQPNVVTFGILIDALCKVRELLAARRFF 314

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G  P+  V+NS+I  Y  AG       L+  M    I      Y  L+++  + 
Sbjct: 315 VQMAKFGVVPNVVVFNSLIDGYSKAGNCSEATDLLLEMEKFKISPDVFTYSILIKNACRL 374

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPD------QARSNFDYMIRLGHK 429
           G V  A  I   M  E           L++ Y + G+ +      +A   F  M R G +
Sbjct: 375 GTVEEADDILKRMEKEGVPANSVVYNSLIDGYCKEGNMEKALEIFKATKFFSDMRRNGLR 434

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVL 473
           PD    A M+  +     +   + L  ++ K G  P   T  V+
Sbjct: 435 PDALAYAVMLQGHLNAKHMADVMMLHADMIKMGIVPNEVTSQVV 478



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 72/146 (49%), Gaps = 8/146 (5%)

Query: 244 AELVLSEESFQT--NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM 301
            +L+L  E F+   +V  YS LI    +   +E+A+ ILK+M + G+  + V    L+  
Sbjct: 346 TDLLLEMEKFKISPDVFTYSILIKNACRLGTVEEADDILKRMEKEGVPANSVVYNSLIDG 405

Query: 302 YSKAGNLDRAKEAFES------LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMIT 355
           Y K GN+++A E F++      +R +G +PD   Y  M+  ++NA      M L   MI 
Sbjct: 406 YCKEGNMEKALEIFKATKFFSDMRRNGLRPDALAYAVMLQGHLNAKHMADVMMLHADMIK 465

Query: 356 SGIERSEEIYLALLRSFAQCGDVRGA 381
            GI  +E     + R +   G ++ A
Sbjct: 466 MGIVPNEVTSQVVRRGYQDNGYLKSA 491


>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63130, mitochondrial; Flags: Precursor
 gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
 gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
 gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
 gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 116/267 (43%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E     NV  +S LIDA  KE  L +AE++  +M +  I PDI T + L++ +     LD
Sbjct: 319 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 378

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            AK  FE + S    P+   YN++I  +  A +   GM L   M   G+  +   Y  L+
Sbjct: 379 EAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLI 438

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
             F Q  +   A  +   M  +   P + + ++L++     G  + A   F+Y+ R   +
Sbjct: 439 HGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKME 498

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD      MI    K   ++   +L   L   G +P   TYT ++    R  L  EA+ L
Sbjct: 499 PDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADAL 558

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAG 516
             ++ E G  P      +L   + R G
Sbjct: 559 FREMKEEGPLPDSGTYNTLIRAHLRDG 585



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 73/342 (21%), Positives = 150/342 (43%), Gaps = 23/342 (6%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E  +Q +   ++ LI    + N   +A  ++ +M   G  PD+VT  ++V+   K G+
Sbjct: 177 MVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGD 236

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D A    + +     +P   +YN++I A  N       ++L   M   GI  +   Y +
Sbjct: 237 IDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNS 296

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+R     G    A ++ + M   +  P + + + L++A+ + G   +A   +D MI+  
Sbjct: 297 LIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRS 356

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLL-LELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
             PD    +S+I  +   + LD+A ++  L + KD F P   TY  L+    + + ++E 
Sbjct: 357 IDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCF-PNVVTYNTLIKGFCKAKRVDEG 415

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
            +L  ++S+ G         +L                 GF +A++     D+ + +   
Sbjct: 416 MELFREMSQRGLVGNTVTYTTLIH---------------GFFQARE----CDNAQIVFKQ 456

Query: 547 LLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQR 588
           +++ G L D      L++  G   + +++ AL+  +   R +
Sbjct: 457 MVSDGVLPDIMTYSILLD--GLCNNGKVETALVVFEYLQRSK 496



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 85/362 (23%), Positives = 141/362 (38%), Gaps = 56/362 (15%)

Query: 207 PSPLLAEWKELLQP-SRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLID 265
           P P + E+ +LL   ++++  +L+  L EQ   L                N+  YS LI+
Sbjct: 77  PFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNL------------GISHNLYTYSILIN 124

Query: 266 AHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQP 325
              + + L  A  +L KM + G  PDIVT   L++ +     +  A      +   G+QP
Sbjct: 125 CFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQP 184

Query: 326 DKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQIT 385
           D   +N++I       +    ++LVD M+  G                            
Sbjct: 185 DSFTFNTLIHGLFRHNRASEAVALVDRMVVKGC--------------------------- 217

Query: 386 NIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKK 445
                   QP L +  ++V    + GD D A S    M +   +P      ++I A    
Sbjct: 218 --------QPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNY 269

Query: 446 NLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQ 505
             ++ ALNL  E++  G  P   TY  L+  L      ++A +LL  + E    P     
Sbjct: 270 KNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTF 329

Query: 506 VSLCDMYARAG--IEKKALQALGFLEAKKEQMGPDDF--ERIINGLLAGGFLQDAQRVHG 561
            +L D + + G  +E + L    + E  K  + PD F    +ING      L +A+ +  
Sbjct: 330 SALIDAFVKEGKLVEAEKL----YDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFE 385

Query: 562 LM 563
           LM
Sbjct: 386 LM 387



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 123/264 (46%), Gaps = 12/264 (4%)

Query: 221 SRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERIL 280
           S I+   + DRL E          EL++S++ F  NV  Y+ LI    K   +++   + 
Sbjct: 366 SLINGFCMHDRLDEAKHMF-----ELMISKDCFP-NVVTYNTLIKGFCKAKRVDEGMELF 419

Query: 281 KKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNA 340
           ++M++ G+V + VT T L+H + +A   D A+  F+ + S G  PD   Y+ ++    N 
Sbjct: 420 REMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNN 479

Query: 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
           G+ +  + + + +  S +E     Y  ++    + G V     +   + ++  +P + + 
Sbjct: 480 GKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTY 539

Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN--LLLEL 458
           T ++  + + G  ++A + F  M   G  PD     ++I A+ +    DKA +  L+ E+
Sbjct: 540 TTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDG--DKAASAELIREM 597

Query: 459 EKDGFEPGPATYTVLVDWL--GRL 480
               F    +T  ++ + L  GRL
Sbjct: 598 RSCRFVGDASTIGLVTNMLHDGRL 621



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 65/302 (21%), Positives = 123/302 (40%)

Query: 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318
           DY K+      +  L+DA  +   M ++   P IV  + L+   +K    D      E +
Sbjct: 48  DYRKISINRLNDLKLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQM 107

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
           ++ G   +   Y+ +I  +    Q  L ++++  M+  G E       +LL  F     +
Sbjct: 108 QNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRI 167

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             A  +   M    +QP   +   L+    +     +A +  D M+  G +PD      +
Sbjct: 168 SDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIV 227

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           +    K+  +D AL+LL ++E+   EPG   Y  ++D L   + +N+A  L  ++   G 
Sbjct: 228 VNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGI 287

Query: 499 APPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQR 558
            P      SL       G    A + L  +  +K       F  +I+  +  G L +A++
Sbjct: 288 RPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEK 347

Query: 559 VH 560
           ++
Sbjct: 348 LY 349



 Score = 45.1 bits (105), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 77/172 (44%)

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
            L + ++L+  + +      A +    M++LG++PD     S++  +   N +  A++L+
Sbjct: 115 NLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLV 174

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
            ++ + G++P   T+  L+  L R    +EA  L+ ++   G  P       + +   + 
Sbjct: 175 GQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKR 234

Query: 516 GIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
           G    AL  L  +E  K + G   +  II+ L     + DA  +   M+ +G
Sbjct: 235 GDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKG 286


>gi|297739643|emb|CBI29825.3| unnamed protein product [Vitis vinifera]
          Length = 722

 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 79/339 (23%), Positives = 144/339 (42%), Gaps = 13/339 (3%)

Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311
           ++  N   +  L++   K    +DA ++  +M + GI P+ +  T+++    +A   D  
Sbjct: 196 NYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDV 255

Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
                +++  G  PD    N+++  +   GQ     +L+ +    G     + Y +L+  
Sbjct: 256 HRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDG 315

Query: 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
             +        +    M     +P +   T+L+  + + G  D A +  + M + G  PD
Sbjct: 316 LFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPD 375

Query: 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
             C  ++I  +    LLDKA +L LE+ K+   P   TYT+L+  + R  L++EA Q+  
Sbjct: 376 TYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFN 435

Query: 492 KISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL---- 547
           ++  LG +P      +L D   +AG  ++A      +E  K    P  F R+  G     
Sbjct: 436 QMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKMEIGK---NPSLFLRLSQGADRVM 492

Query: 548 -LAGGFL-----QDAQRVHGLMEAQGFAASERLKVALIS 580
             A GF      +DA RV   M   G   S  +   L++
Sbjct: 493 DTANGFHRVDREEDAFRVLDQMVKNGCTPSSAVYKCLMT 531



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 149/334 (44%), Gaps = 6/334 (1%)

Query: 230 DRLREQN-TQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGI 288
           D +REQ   +L F+         SF++ V  ++ +ID  AK++  +   +IL+++  + I
Sbjct: 69  DVMREQRRPELGFRFFIWTTRRRSFRSWV-THNLVIDMLAKDDGFDTYWKILEELKNSNI 127

Query: 289 VPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMS 348
                T +VL+  Y+K+G  ++A E+F  ++  G +PD   YNS++   V      L ++
Sbjct: 128 QIPPPTFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQKEVFLLALA 187

Query: 349 LVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYG 408
           + + M+      +   ++ LL    + G    A ++ + M  +   P     T+++    
Sbjct: 188 VYNQMLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLC 247

Query: 409 QAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPA 468
           QA   D      + M   G  PD     +++  + K   +D+A  LL   EK+G+  G  
Sbjct: 248 QAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIK 307

Query: 469 TYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFL 528
            Y+ L+D L R +  +E ++   K+ + G  P   +   L   +   G+   AL  L   
Sbjct: 308 GYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLN-- 365

Query: 529 EAKKEQMGPDD--FERIINGLLAGGFLQDAQRVH 560
           +  +  + PD   +  +I G    G L  A+ + 
Sbjct: 366 DMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQ 399



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 105/242 (43%), Gaps = 11/242 (4%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           +  +E +   ++ YS LID   +    ++ +   +KM + GI PD+V  T+L+  + + G
Sbjct: 296 LFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVG 355

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            +D A      +   G  PD   YN++I  + + G      SL   +  +    +   Y 
Sbjct: 356 MVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYT 415

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+    + G +  A QI N M      P++ +   L++   +AG+ ++AR  F Y + +
Sbjct: 416 ILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLF-YKMEI 474

Query: 427 GHKPD---------DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
           G  P          DR        + + +  + A  +L ++ K+G  P  A Y  L+ W 
Sbjct: 475 GKNPSLFLRLSQGADR-VMDTANGFHRVDREEDAFRVLDQMVKNGCTPSSAVYKCLMTWS 533

Query: 478 GR 479
            R
Sbjct: 534 CR 535


>gi|414881814|tpg|DAA58945.1| TPA: hypothetical protein ZEAMMB73_003881 [Zea mays]
          Length = 792

 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 97/226 (42%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + ++    N+  Y+  ID + + NC + A ++L  +  +GI PDI      +  + K GN
Sbjct: 561 MRKKGITPNIVTYTSFIDGYCRTNCCDLAVKLLIYVRRDGIQPDIAAYNAFIDTFCKQGN 620

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           + RA      L   G  PD  VYNS +  Y N             MI   +    EIY  
Sbjct: 621 MSRALHFLVLLLKDGLTPDVTVYNSFVTGYKNLKMMAEASKFYYSMIKQRVVADTEIYTT 680

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+  F++ G+V  A ++ + M      P  ++ T L     ++GD D A+   D M RL 
Sbjct: 681 LIDGFSKVGNVAFALELYSEMMANHVIPDDKTFTALTHGLCRSGDIDGAKRLLDDMRRLD 740

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVL 473
             P+      +I A  +   L +A  L  E+   G  P   TY +L
Sbjct: 741 VSPNIVTYNMLINACVRDGKLQEAFQLHDEMLSSGVVPDDTTYDIL 786



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 107/257 (41%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y  LI    K   L +A  +  KM E G+ P IVT   L+  Y + G +D A + +
Sbjct: 394 DVFTYGCLIHWLCKHQKLHEAVNLWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEALKLY 453

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   GF P++  Y +++  Y+         +L++ M  +G+   +  Y  L+      
Sbjct: 454 SEMPDKGFPPNEVTYTTLMKGYIKKKAFDNAYALLNEMRQNGVSCGDYTYNILINGLYMV 513

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
             V    ++      E F PT  +   ++  + +AG    A   +  M + G  P+    
Sbjct: 514 NRVCEVDEMLKRFLSEGFVPTTMTYNSIINGFVKAGMMGSAFGMYRQMRKKGITPNIVTY 573

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            S I  Y + N  D A+ LL+ + +DG +P  A Y   +D   +   ++ A   L  + +
Sbjct: 574 TSFIDGYCRTNCCDLAVKLLIYVRRDGIQPDIAAYNAFIDTFCKQGNMSRALHFLVLLLK 633

Query: 496 LGEAPPFKIQVSLCDMY 512
            G  P   +  S    Y
Sbjct: 634 DGLTPDVTVYNSFVTGY 650



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/314 (22%), Positives = 125/314 (39%), Gaps = 39/314 (12%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + ++ F  N   Y+ L+  + K+   ++A  +L +M +NG+     T  +L++       
Sbjct: 456 MPDKGFPPNEVTYTTLMKGYIKKKAFDNAYALLNEMRQNGVSCGDYTYNILINGLYMVNR 515

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +    E  +   S GF P    YNS+I  +V AG          M    G+ R       
Sbjct: 516 VCEVDEMLKRFLSEGFVPTTMTYNSIINGFVKAGM---------MGSAFGMYRQ------ 560

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
                               MR +   P + + T  ++ Y +    D A     Y+ R G
Sbjct: 561 --------------------MRKKGITPNIVTYTSFIDGYCRTNCCDLAVKLLIYVRRDG 600

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            +PD     + I  + K+  + +AL+ L+ L KDG  P    Y   V     L+++ EA 
Sbjct: 601 IQPDIAAYNAFIDTFCKQGNMSRALHFLVLLLKDGLTPDVTVYNSFVTGYKNLKMMAEAS 660

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIIN 545
           +    + +       +I  +L D +++ G    AL+   + E     + PDD  F  + +
Sbjct: 661 KFYYSMIKQRVVADTEIYTTLIDGFSKVGNVAFALEL--YSEMMANHVIPDDKTFTALTH 718

Query: 546 GLLAGGFLQDAQRV 559
           GL   G +  A+R+
Sbjct: 719 GLCRSGDIDGAKRL 732



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/251 (21%), Positives = 103/251 (41%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
            E F      Y+ +I+   K   +  A  + ++M + GI P+IVT T  +  Y +    D
Sbjct: 528 SEGFVPTTMTYNSIINGFVKAGMMGSAFGMYRQMRKKGITPNIVTYTSFIDGYCRTNCCD 587

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A +    +R  G QPD   YN+ I  +   G     +  + +++  G+     +Y + +
Sbjct: 588 LAVKLLIYVRRDGIQPDIAAYNAFIDTFCKQGNMSRALHFLVLLLKDGLTPDVTVYNSFV 647

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
             +     +  A +    M  +      E  T L++ + + G+   A   +  M+     
Sbjct: 648 TGYKNLKMMAEASKFYYSMIKQRVVADTEIYTTLIDGFSKVGNVAFALELYSEMMANHVI 707

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PDD+   ++     +   +D A  LL ++ +    P   TY +L++   R   + EA QL
Sbjct: 708 PDDKTFTALTHGLCRSGDIDGAKRLLDDMRRLDVSPNIVTYNMLINACVRDGKLQEAFQL 767

Query: 490 LGKISELGEAP 500
             ++   G  P
Sbjct: 768 HDEMLSSGVVP 778



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 97/217 (44%), Gaps = 1/217 (0%)

Query: 282 KMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAG 341
           +M   G+VPD  + T L+   ++  +   A   F+ +R  G   D K+Y+ +I A V  G
Sbjct: 140 RMVTRGVVPDAKSRTDLLVTTARGASAADALTLFDEMRGKGCYADAKMYDVVIRACVRGG 199

Query: 342 QPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCT 401
                + L D M  +G++  E +Y   +    +  D   A Q+   MR   F+P   + +
Sbjct: 200 MHCDAVRLFDEMAGAGVKPDERVYAITISGLCKLRDADRALQVLGKMREAGFEPWELTYS 259

Query: 402 LLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIA-AYGKKNLLDKALNLLLELEK 460
            +V+   + G  D+A    D M+    K  D   A+M+   Y     + KAL+L  E+  
Sbjct: 260 SVVDVLVKVGRMDEALRLKDQMLLATGKKMDVVLATMLMHGYCLHGEVGKALDLFDEVVS 319

Query: 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           DG  P   TY VL+       + +E  +L  ++ E G
Sbjct: 320 DGVTPTNVTYGVLIKGCDAEGMSDETYKLCRQMIEQG 356



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/219 (20%), Positives = 95/219 (43%), Gaps = 2/219 (0%)

Query: 215 KELLQPSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCL 273
           K+ + P+ + + + +D   R     L  K+  + +  +  Q ++  Y+  ID   K+  +
Sbjct: 563 KKGITPNIVTYTSFIDGYCRTNCCDLAVKLL-IYVRRDGIQPDIAAYNAFIDTFCKQGNM 621

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
             A   L  + ++G+ PD+      V  Y     +  A + + S+       D ++Y ++
Sbjct: 622 SRALHFLVLLLKDGLTPDVTVYNSFVTGYKNLKMMAEASKFYYSMIKQRVVADTEIYTTL 681

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           I  +   G     + L   M+ + +   ++ + AL     + GD+ GA ++ + MR  + 
Sbjct: 682 IDGFSKVGNVAFALELYSEMMANHVIPDDKTFTALTHGLCRSGDIDGAKRLLDDMRRLDV 741

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            P + +  +L+ A  + G   +A    D M+  G  PDD
Sbjct: 742 SPNIVTYNMLINACVRDGKLQEAFQLHDEMLSSGVVPDD 780



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 114/274 (41%), Gaps = 20/274 (7%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  +I A  +     DA R+  +M   G+ PD     + +    K  + DRA +    +R
Sbjct: 188 YDVVIRACVRGGMHCDAVRLFDEMAGAGVKPDERVYAITISGLCKLRDADRALQVLGKMR 247

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVD-MMITSGIERSEEIYLALLRSFAQCGDV 378
             GF+P +  Y+S++   V  G+    + L D M++ +G +    +   L+  +   G+V
Sbjct: 248 EAGFEPWELTYSSVVDVLVKVGRMDEALRLKDQMLLATGKKMDVVLATMLMHGYCLHGEV 307

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             A  + + +  +   PT  +  +L++     G  D+       MI  G          +
Sbjct: 308 GKALDLFDEVVSDGVTPTNVTYGVLIKGCDAEGMSDETYKLCRQMIEQG---------LL 358

Query: 439 IAAYGKKNLLDKALNL---------LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           ++ Y + NL+ K L           LLEL  D   P   TY  L+ WL + Q ++EA  L
Sbjct: 359 LSTY-EFNLVIKGLLRDKRWKDAIGLLELVVDTGVPDVFTYGCLIHWLCKHQKLHEAVNL 417

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
             K+ E G  P      SL   Y   G   +AL+
Sbjct: 418 WDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEALK 451



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 56/112 (50%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LID  +K   +  A  +  +M  N ++PD  T T L H   ++G++D AK   + +R
Sbjct: 678 YTTLIDGFSKVGNVAFALELYSEMMANHVIPDDKTFTALTHGLCRSGDIDGAKRLLDDMR 737

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
                P+   YN +I A V  G+ +    L D M++SG+   +  Y  L R+
Sbjct: 738 RLDVSPNIVTYNMLINACVRDGKLQEAFQLHDEMLSSGVVPDDTTYDILPRT 789


>gi|387219093|gb|AFJ69255.1| hypothetical protein NGATSA_2006000, partial [Nannochloropsis
           gaditana CCMP526]
          Length = 479

 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 115/245 (46%), Gaps = 10/245 (4%)

Query: 248 LSEESFQTNVRDYSKLIDAHA-KENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           + E     +V  YS+L+  +A KE  +  AE +L++M  +G+ P+  T   L+  Y KAG
Sbjct: 91  MQEHGVLADVVTYSQLLQGYATKEGDMGKAEEVLERMARDGVAPNSYTYNYLIEGYVKAG 150

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            +D A++  E +R+ G  P    Y  ++ AY      +    ++D M   G++ + +++ 
Sbjct: 151 EMDWAEDVLERMRTVGLAPTSMNYCVLMDAYTRRRDARGAEKILDRMKKEGVQANVQVFT 210

Query: 367 ALLRSFAQCGDVRGA-GQITNIMRIEE--------FQPTLESCTLLVEAYGQAGDPDQAR 417
            L+ ++A+ GDV GA G +  ++ + E         +P + + + L+  Y +AG    A 
Sbjct: 211 TLMNAYAKRGDVEGAEGVLARMLAVAEEEGGGSKDCEPNVHTYSTLMNVYARAGLAAGAE 270

Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
                M   G  P+     +++ AY +    + A  +L  +E  G  P   TY  L+   
Sbjct: 271 GVLTRMTAAGWAPNVITFTTLMTAYSRAGDPEGAELVLKRMEAAGVSPNVLTYNTLLSAT 330

Query: 478 GRLQL 482
            R+ L
Sbjct: 331 SRMGL 335



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/311 (21%), Positives = 128/311 (41%), Gaps = 45/311 (14%)

Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMY--------- 302
           + + N   Y+ L+ A+     +  A+++LK+M + G+ PD  T   L+  +         
Sbjct: 25  NLKPNAITYNSLLTAYTNAGDMAGAQQVLKRMVQAGLSPDTYTFNTLIAAFVARREVRAA 84

Query: 303 ---------------------------SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
                                      +K G++ +A+E  E +   G  P+   YN +I 
Sbjct: 85  EKMVAYMQEHGVLADVVTYSQLLQGYATKEGDMGKAEEVLERMARDGVAPNSYTYNYLIE 144

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
            YV AG+      +++ M T G+  +   Y  L+ ++ +  D RGA +I + M+ E  Q 
Sbjct: 145 GYVKAGEMDWAEDVLERMRTVGLAPTSMNYCVLMDAYTRRRDARGAEKILDRMKKEGVQA 204

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH---------KPDDRCTASMIAAYGKKN 446
            ++  T L+ AY + GD + A      M+ +           +P+    ++++  Y +  
Sbjct: 205 NVQVFTTLMNAYAKRGDVEGAEGVLARMLAVAEEEGGGSKDCEPNVHTYSTLMNVYARAG 264

Query: 447 LLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQV 506
           L   A  +L  +   G+ P   T+T L+    R      AE +L ++   G +P      
Sbjct: 265 LAAGAEGVLTRMTAAGWAPNVITFTTLMTAYSRAGDPEGAELVLKRMEAAGVSPNVLTYN 324

Query: 507 SLCDMYARAGI 517
           +L    +R G+
Sbjct: 325 TLLSATSRMGL 335



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 112/257 (43%), Gaps = 10/257 (3%)

Query: 323 FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAG 382
            +P+   YNS++ AY NAG       ++  M+ +G+      +  L+ +F    +VR A 
Sbjct: 26  LKPNAITYNSLLTAYTNAGDMAGAQQVLKRMVQAGLSPDTYTFNTLIAAFVARREVRAAE 85

Query: 383 QITNIMRIEEFQPTLESCTLLVEAYG-QAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441
           ++   M+       + + + L++ Y  + GD  +A    + M R G  P+      +I  
Sbjct: 86  KMVAYMQEHGVLADVVTYSQLLQGYATKEGDMGKAEEVLERMARDGVAPNSYTYNYLIEG 145

Query: 442 YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
           Y K   +D A ++L  +   G  P    Y VL+D   R +    AE++L ++ + G    
Sbjct: 146 YVKAGEMDWAEDVLERMRTVGLAPTSMNYCVLMDAYTRRRDARGAEKILDRMKKEGVQAN 205

Query: 502 FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG-------PD--DFERIINGLLAGGF 552
            ++  +L + YA+ G  + A   L  + A  E+ G       P+   +  ++N     G 
Sbjct: 206 VQVFTTLMNAYAKRGDVEGAEGVLARMLAVAEEEGGGSKDCEPNVHTYSTLMNVYARAGL 265

Query: 553 LQDAQRVHGLMEAQGFA 569
              A+ V   M A G+A
Sbjct: 266 AAGAEGVLTRMTAAGWA 282



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 88/169 (52%), Gaps = 11/169 (6%)

Query: 218 LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L P+ +++  L+D   R ++ +   K+ +  + +E  Q NV+ ++ L++A+AK   +E A
Sbjct: 167 LAPTSMNYCVLMDAYTRRRDARGAEKILDR-MKKEGVQANVQVFTTLMNAYAKRGDVEGA 225

Query: 277 ERILKKM-----NENG----IVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK 327
           E +L +M      E G      P++ T + L+++Y++AG    A+     + + G+ P+ 
Sbjct: 226 EGVLARMLAVAEEEGGGSKDCEPNVHTYSTLMNVYARAGLAAGAEGVLTRMTAAGWAPNV 285

Query: 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
             + +++ AY  AG P+    ++  M  +G+  +   Y  LL + ++ G
Sbjct: 286 ITFTTLMTAYSRAGDPEGAELVLKRMEAAGVSPNVLTYNTLLSATSRMG 334


>gi|302805861|ref|XP_002984681.1| hypothetical protein SELMODRAFT_30598 [Selaginella moellendorffii]
 gi|300147663|gb|EFJ14326.1| hypothetical protein SELMODRAFT_30598 [Selaginella moellendorffii]
          Length = 651

 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 143/326 (43%), Gaps = 41/326 (12%)

Query: 215 KELLQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCL 273
           K  + P+++ +  ++D   R  +    FKV E ++S    + ++  Y+ L+ A  K   +
Sbjct: 318 KHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSA-GLKPDIVIYNILVHAFCKAGRM 376

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           + A  +L+ +  N ++P I T T ++  Y K GN+ +A E F+ +++ G +P    YNS+
Sbjct: 377 DKALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNSL 436

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE- 392
           +     A Q +    +++ M+ +G+  SE IY AL   +A+ GDV  A  +   M+ E  
Sbjct: 437 LSGLAKARQMENARLMLNEMLANGVVPSERIYTALTEGYARTGDVEKAFGVFQRMKKENL 496

Query: 393 --------------------------FQPTLES---------CTLLVEAYGQAGDPDQAR 417
                                     FQ   ++         CT+L  AY +AG  ++A 
Sbjct: 497 AIDIVAYGALLKACCNSGAMHGAAEVFQQITDAGLKHNQITYCTMLDGAYARAGRVEEAE 556

Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG---FEPGPATYTVLV 474
                M R G KPD     S+I AYG     +    LL ++ K      +P   TY  L+
Sbjct: 557 ELVSAMERDGTKPDTLIYNSLINAYGVSGRHEDMEALLAKMVKSSSKQTKPDIGTYNTLI 616

Query: 475 DWLGRLQLINEAEQLLGKISELGEAP 500
               +   I  AE+L   ++ L   P
Sbjct: 617 QVYAQAGFIPRAEELFQGLARLKLVP 642



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 135/303 (44%), Gaps = 6/303 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ ++D +A+      A ++ + M   G+ PDIV   +LVH + KAG +D+A    E++ 
Sbjct: 328 YAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALGVLENIE 387

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           ++   P  + Y S++  YV  G  +  + + D + T+G+      Y +LL   A+   + 
Sbjct: 388 ANRLLPTIETYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQME 447

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  + N M      P+    T L E Y + GD ++A   F  M +     D     +++
Sbjct: 448 NARLMLNEMLANGVVPSERIYTALTEGYARTGDVEKAFGVFQRMKKENLAIDIVAYGALL 507

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW-LGRLQLINEAEQLLGKISELGE 498
            A      +  A  +  ++   G +    TY  ++D    R   + EAE+L+  +   G 
Sbjct: 508 KACCNSGAMHGAAEVFQQITDAGLKHNQITYCTMLDGAYARAGRVEEAEELVSAMERDGT 567

Query: 499 APPFKIQVSLCDMYARAGIEKKALQAL--GFLEAKKEQMGPD--DFERIINGLLAGGFLQ 554
            P   I  SL + Y  +G   + ++AL    +++  +Q  PD   +  +I      GF+ 
Sbjct: 568 KPDTLIYNSLINAYGVSG-RHEDMEALLAKMVKSSSKQTKPDIGTYNTLIQVYAQAGFIP 626

Query: 555 DAQ 557
            A+
Sbjct: 627 RAE 629



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 77/336 (22%), Positives = 144/336 (42%), Gaps = 16/336 (4%)

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           +R+Y  L+D +A+      A    + M  + I P++   T L+H Y++A +++ A    E
Sbjct: 131 LREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVACTE 190

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
            + S G Q ++ V+ S+I  Y +AG  +      +      +     +Y ++++++ Q G
Sbjct: 191 EMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAG 250

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
           ++     +   M  E FQ  L   T ++  + +  D ++  S F    RL   P      
Sbjct: 251 NMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFH---RLKVSP------ 301

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
                  +   + KAL++L E++K G  P    Y +++D   R      A ++   +   
Sbjct: 302 -------QAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSA 354

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDA 556
           G  P   I   L   + +AG   KAL  L  +EA +     + +  I++G + GG +Q A
Sbjct: 355 GLKPDIVIYNILVHAFCKAGRMDKALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKA 414

Query: 557 QRVHGLMEAQGFAASERLKVALISSQTFNRQRQPTR 592
             V   ++  G         +L+S     RQ +  R
Sbjct: 415 LEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENAR 450



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/342 (23%), Positives = 138/342 (40%), Gaps = 54/342 (15%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ LI A+A+   +E A    ++M   GI  +      ++  Y+ AGN + A+  F
Sbjct: 165 NVHIYTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWF 224

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA-- 373
           E  ++    P   VYNS++ AY  AG  +   +L+  M   G + +  +Y  +L  FA  
Sbjct: 225 EKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEI 284

Query: 374 -----------------QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
                            Q G++  A  I   M      P      ++++ Y + GD   A
Sbjct: 285 RDEEKCLSFFHRLKVSPQAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAA 344

Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476
              ++ M+  G KPD      ++ A+ K   +DKAL +L  +E +   P   TYT     
Sbjct: 345 FKVWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALGVLENIEANRLLPTIETYT----- 399

Query: 477 LGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG 536
                                         S+ D Y + G  +KAL+    ++    + G
Sbjct: 400 ------------------------------SILDGYVKGGNIQKALEVFDRIKTAGLRPG 429

Query: 537 PDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVAL 578
              +  +++GL     +++A+ +   M A G   SER+  AL
Sbjct: 430 VVSYNSLLSGLAKARQMENARLMLNEMLANGVVPSERIYTAL 471



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/333 (20%), Positives = 156/333 (46%), Gaps = 30/333 (9%)

Query: 248 LSEESFQTNVRDYSKLIDAHAK----ENCLEDAER---------------ILKKMNENGI 288
           + EE FQ N+  Y+ +++  A+    E CL    R               IL++M+++G+
Sbjct: 262 MEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKVSPQAGNMAKALDILEEMDKHGV 321

Query: 289 VPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMS 348
            P+ +   +++  Y++ G+   A + +E + S G +PD  +YN ++ A+  AG+    + 
Sbjct: 322 SPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALG 381

Query: 349 LVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYG 408
           +++ +  + +  + E Y ++L  + + G+++ A ++ + ++    +P + S   L+    
Sbjct: 382 VLENIEANRLLPTIETYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGLA 441

Query: 409 QAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPA 468
           +A   + AR   + M+  G  P +R   ++   Y +   ++KA  +   ++K+       
Sbjct: 442 KARQMENARLMLNEMLANGVVPSERIYTALTEGYARTGDVEKAFGVFQRMKKENLAIDIV 501

Query: 469 TYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM----YARAGIEKKALQA 524
            Y  L+        ++ A ++  +I++ G       Q++ C M    YARAG  ++A + 
Sbjct: 502 AYGALLKACCNSGAMHGAAEVFQQITDAGLKHN---QITYCTMLDGAYARAGRVEEAEEL 558

Query: 525 LGFLEAKKEQMGPDD--FERIINGLLAGGFLQD 555
           +  +E  ++   PD   +  +IN     G  +D
Sbjct: 559 VSAME--RDGTKPDTLIYNSLINAYGVSGRHED 589



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 68/307 (22%), Positives = 127/307 (41%), Gaps = 21/307 (6%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           +  Q N   +  +I  +A     E AE   +K     +VP  +    +V  Y +AGN++ 
Sbjct: 195 QGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNMET 254

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYV-------------------NAGQPKLGMSLVD 351
            +     +   GFQ +  +Y +++  +                     AG     + +++
Sbjct: 255 VEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKVSPQAGNMAKALDILE 314

Query: 352 MMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAG 411
            M   G+  ++ IY  ++  +A+ GD   A ++   M     +P +    +LV A+ +AG
Sbjct: 315 EMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAG 374

Query: 412 DPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYT 471
             D+A    + +      P      S++  Y K   + KAL +   ++  G  PG  +Y 
Sbjct: 375 RMDKALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVVSYN 434

Query: 472 VLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK 531
            L+  L + + +  A  +L ++   G  P  +I  +L + YAR G  +KA     F   K
Sbjct: 435 SLLSGLAKARQMENARLMLNEMLANGVVPSERIYTALTEGYARTGDVEKAFGV--FQRMK 492

Query: 532 KEQMGPD 538
           KE +  D
Sbjct: 493 KENLAID 499



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 98/221 (44%), Gaps = 10/221 (4%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSE---ESFQTNVRDYSKLIDAHAKENCLE 274
           L+P  + + +LL  L +       + A L+L+E        + R Y+ L + +A+   +E
Sbjct: 426 LRPGVVSYNSLLSGLAKARQ---MENARLMLNEMLANGVVPSERIYTALTEGYARTGDVE 482

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
            A  + ++M +  +  DIV    L+     +G +  A E F+ +   G + ++  Y +M+
Sbjct: 483 KAFGVFQRMKKENLAIDIVAYGALLKACCNSGAMHGAAEVFQQITDAGLKHNQITYCTML 542

Query: 335 -MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIM---RI 390
             AY  AG+ +    LV  M   G +    IY +L+ ++   G       +   M     
Sbjct: 543 DGAYARAGRVEEAEELVSAMERDGTKPDTLIYNSLINAYGVSGRHEDMEALLAKMVKSSS 602

Query: 391 EEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
           ++ +P + +   L++ Y QAG   +A   F  + RL   PD
Sbjct: 603 KQTKPDIGTYNTLIQVYAQAGFIPRAEELFQGLARLKLVPD 643



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 3/78 (3%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENG---IVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           Y+ LI+A+      ED E +L KM ++      PDI T   L+ +Y++AG + RA+E F+
Sbjct: 574 YNSLINAYGVSGRHEDMEALLAKMVKSSSKQTKPDIGTYNTLIQVYAQAGFIPRAEELFQ 633

Query: 317 SLRSHGFQPDKKVYNSMI 334
            L      PD   + +++
Sbjct: 634 GLARLKLVPDATTWTALM 651



 Score = 42.7 bits (99), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 68/166 (40%), Gaps = 3/166 (1%)

Query: 383 QITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH-KPDDRCTASMIAA 441
           +I N  ++ + +P L    LLV+ Y + GD   AR+ F+ M R  H KP+     S+I A
Sbjct: 118 KIVNAFQVID-KPVLREYGLLVDFYARHGDKVAARATFEAM-RASHIKPNVHIYTSLIHA 175

Query: 442 YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
           Y +   ++ A+    E+   G +   A +  ++           AE    K       P 
Sbjct: 176 YAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPG 235

Query: 502 FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
             +  S+   Y +AG  +     L  +E +  Q     +  ++NG 
Sbjct: 236 GIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGF 281


>gi|297734042|emb|CBI15289.3| unnamed protein product [Vitis vinifera]
          Length = 793

 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 124/269 (46%), Gaps = 7/269 (2%)

Query: 210 LLAEW-KELLQPSRIDWINLLDRLREQNTQLYFKVAELV---LSEESFQTNVRDYSKLID 265
           LLAE  ++  QP+ + +  L+      N   Y   A  V   + E   Q +   Y  LID
Sbjct: 410 LLAEMVRDGCQPNVVTYNRLIHSYGRAN---YLNEAVSVFDRMQEAGCQPDRVTYCTLID 466

Query: 266 AHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQP 325
            HAK   L+ A  + +KM E  + PD  T +V+++   KAG+L  A + F  +   G  P
Sbjct: 467 IHAKAGFLDVALHMYQKMQEAHLSPDTFTYSVIINCLGKAGHLTSAHKLFCEMVDQGCVP 526

Query: 326 DKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQIT 385
           +   YN MI     A      + L   M  +G +  +  Y  ++     CG +  A  I 
Sbjct: 527 NLVTYNIMIALQAKARNYPTALELYRDMQNAGFQPDKVTYSIVMEVLGHCGHLEEAEAIF 586

Query: 386 NIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKK 445
             M+ + + P      LLV+ +G+ G+ +++   +  M+  G  P+     S+++A+ + 
Sbjct: 587 TEMKRKNWVPDEPVYGLLVDLWGKVGNVEKSWEWYQAMLNAGLCPNVPTCNSLLSAFLRV 646

Query: 446 NLLDKALNLLLELEKDGFEPGPATYTVLV 474
           + L  A NLL  + + G +P   TYT+L+
Sbjct: 647 HRLSDAYNLLQSMLRLGLQPSLQTYTLLL 675



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 124/278 (44%), Gaps = 4/278 (1%)

Query: 243 VAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMY 302
           +AE+V   +  Q NV  Y++LI ++ + N L +A  +  +M E G  PD VT   L+ ++
Sbjct: 411 LAEMV--RDGCQPNVVTYNRLIHSYGRANYLNEAVSVFDRMQEAGCQPDRVTYCTLIDIH 468

Query: 303 SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE 362
           +KAG LD A   ++ ++     PD   Y+ +I     AG       L   M+  G   + 
Sbjct: 469 AKAGFLDVALHMYQKMQEAHLSPDTFTYSVIINCLGKAGHLTSAHKLFCEMVDQGCVPNL 528

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
             Y  ++   A+  +   A ++   M+   FQP   + ++++E  G  G  ++A + F  
Sbjct: 529 VTYNIMIALQAKARNYPTALELYRDMQNAGFQPDKVTYSIVMEVLGHCGHLEEAEAIFTE 588

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
           M R    PD+     ++  +GK   ++K+      +   G  P   T   L+    R+  
Sbjct: 589 MKRKNWVPDEPVYGLLVDLWGKVGNVEKSWEWYQAMLNAGLCPNVPTCNSLLSAFLRVHR 648

Query: 483 INEAEQLLGKISELGEAPPFKIQVSL--CDMYARAGIE 518
           +++A  LL  +  LG  P  +    L  C   AR+  +
Sbjct: 649 LSDAYNLLQSMLRLGLQPSLQTYTLLLSCCTEARSSFD 686



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/271 (21%), Positives = 113/271 (41%), Gaps = 36/271 (13%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           +  F+ +   Y+ ++    +        ++L +M  +G  P++VT   L+H Y +A  L+
Sbjct: 381 QTGFKHDGHTYTTMVGILGRARQFGAINKLLAEMVRDGCQPNVVTYNRLIHSYGRANYLN 440

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A   F+ ++  G QPD+  Y ++I  +  AG   + + +   M        +E +L+  
Sbjct: 441 EAVSVFDRMQEAGCQPDRVTYCTLIDIHAKAGFLDVALHMYQKM--------QEAHLS-- 490

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
                                    P   + ++++   G+AG    A   F  M+  G  
Sbjct: 491 -------------------------PDTFTYSVIINCLGKAGHLTSAHKLFCEMVDQGCV 525

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           P+      MIA   K      AL L  +++  GF+P   TY+++++ LG    + EAE +
Sbjct: 526 PNLVTYNIMIALQAKARNYPTALELYRDMQNAGFQPDKVTYSIVMEVLGHCGHLEEAEAI 585

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAG-IEK 519
             ++      P   +   L D++ + G +EK
Sbjct: 586 FTEMKRKNWVPDEPVYGLLVDLWGKVGNVEK 616



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 89/211 (42%), Gaps = 17/211 (8%)

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPT----LESCTLLVEAY------GQAGDPDQARSN 419
           R F   G V     ++ I+R   + P     L +   L++AY       Q  D   A   
Sbjct: 317 RQFGSSGHV--VENVSRILRQLSWGPAAEEALRNLNCLMDAYQANQVLKQIQDHPVALGF 374

Query: 420 FDYMIR-LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLG 478
           F ++ R  G K D     +M+   G+         LL E+ +DG +P   TY  L+   G
Sbjct: 375 FYWLKRQTGFKHDGHTYTTMVGILGRARQFGAINKLLAEMVRDGCQPNVVTYNRLIHSYG 434

Query: 479 RLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
           R   +NEA  +  ++ E G  P      +L D++A+AG    AL    + + ++  + PD
Sbjct: 435 RANYLNEAVSVFDRMQEAGCQPDRVTYCTLIDIHAKAGFLDVALHM--YQKMQEAHLSPD 492

Query: 539 DFER--IINGLLAGGFLQDAQRVHGLMEAQG 567
            F    IIN L   G L  A ++   M  QG
Sbjct: 493 TFTYSVIINCLGKAGHLTSAHKLFCEMVDQG 523


>gi|168025874|ref|XP_001765458.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683308|gb|EDQ69719.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 670

 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 129/279 (46%), Gaps = 1/279 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + ++    +V  +S LI A A     E A  +L++M  +   P++V+   L+  Y K GN
Sbjct: 383 IQDKGLTPDVMSWSSLISACANAGQAERALEVLERMKTSDCQPNVVSWCGLLKAYQKTGN 442

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            ++A+E F ++   G  P++  + S++ AY    Q K  +  ++ +   G++     +  
Sbjct: 443 WEKAEEIFHAMLDSGCPPNEVAWCSLLSAYEKGRQWKKVLYTIEKLEELGMKLDVVAWST 502

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
            + + A+ G    A +    M      P + + + L++AYG  G  ++A S F  M+R+G
Sbjct: 503 TISALAKAGQWELAEEKFKQMTKSGCLPNIVTYSSLIKAYGDVGLWEKAESVFKLMLRVG 562

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELE-KDGFEPGPATYTVLVDWLGRLQLINEA 486
            +P+ +   +++ AYGK   L+K +     +E + G EP    Y  +            A
Sbjct: 563 IRPNPQACCALLRAYGKGKELEKVIIFFESMEPQYGVEPDKYAYAAIFWACWTCGEWQRA 622

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
            + + ++   G  P   I  +L +MY   G   KA+Q L
Sbjct: 623 VKYIDRMEMAGCTPDSVIYTTLINMYEANGQIDKAMQVL 661



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 75/345 (21%), Positives = 141/345 (40%), Gaps = 7/345 (2%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++    F   + +Y ++  A A+     +A  + + M E G    + +   L+  Y +  
Sbjct: 312 MMQARGFSIGLHEYIEMQWACARARKPREAYGLFQVMLEQGYELKLESYNALLCAYERTA 371

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
             + A   F  ++  G  PD   ++S+I A  NAGQ +  + +++ M TS  + +   + 
Sbjct: 372 QWEDAMRTFIWIQDKGLTPDVMSWSSLISACANAGQAERALEVLERMKTSDCQPNVVSWC 431

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            LL+++ + G+   A +I + M      P   +   L+ AY +     +     + +  L
Sbjct: 432 GLLKAYQKTGNWEKAEEIFHAMLDSGCPPNEVAWCSLLSAYEKGRQWKKVLYTIEKLEEL 491

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G K D    ++ I+A  K    + A     ++ K G  P   TY+ L+   G + L  +A
Sbjct: 492 GMKLDVVAWSTTISALAKAGQWELAEEKFKQMTKSGCLPNIVTYSSLIKAYGDVGLWEKA 551

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG--PDDFER-- 542
           E +   +  +G  P  +   +L   Y +    K+  + + F E+ + Q G  PD +    
Sbjct: 552 ESVFKLMLRVGIRPNPQACCALLRAYGKG---KELEKVIIFFESMEPQYGVEPDKYAYAA 608

Query: 543 IINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQ 587
           I       G  Q A +    ME  G      +   LI+    N Q
Sbjct: 609 IFWACWTCGEWQRAVKYIDRMEMAGCTPDSVIYTTLINMYEANGQ 653



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 67/296 (22%), Positives = 119/296 (40%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N    + LI A      L  A ++ + M + GI   I T   L+    +  + D A E F
Sbjct: 216 NAYVCTTLIAALGCGRRLSQALKLFRWMEKAGIERPIFTFNALMVACGRCASGDTAVELF 275

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E +   G  PD+  +  ++ A   AG      S +DMM   G       Y+ +  + A+ 
Sbjct: 276 EEMEKLGIVPDRITFTGLVSATTAAGLWDRAQSFIDMMQARGFSIGLHEYIEMQWACARA 335

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
              R A  +  +M  + ++  LES   L+ AY +    + A   F ++   G  PD    
Sbjct: 336 RKPREAYGLFQVMLEQGYELKLESYNALLCAYERTAQWEDAMRTFIWIQDKGLTPDVMSW 395

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
           +S+I+A       ++AL +L  ++    +P   ++  L+    +     +AE++   + +
Sbjct: 396 SSLISACANAGQAERALEVLERMKTSDCQPNVVSWCGLLKAYQKTGNWEKAEEIFHAMLD 455

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGG 551
            G  P      SL   Y +    KK L  +  LE    ++    +   I+ L   G
Sbjct: 456 SGCPPNEVAWCSLLSAYEKGRQWKKVLYTIEKLEELGMKLDVVAWSTTISALAKAG 511



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 105/245 (42%), Gaps = 15/245 (6%)

Query: 219 QPSRIDWINLLDRLREQNTQLYFKVAEL--VLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           QP+ + W  LL     Q T  + K  E+   + +     N   +  L+ A+ K    +  
Sbjct: 424 QPNVVSWCGLLKAY--QKTGNWEKAEEIFHAMLDSGCPPNEVAWCSLLSAYEKGRQWKKV 481

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
              ++K+ E G+  D+V  +  +   +KAG  + A+E F+ +   G  P+   Y+S+I A
Sbjct: 482 LYTIEKLEELGMKLDVVAWSTTISALAKAGQWELAEEKFKQMTKSGCLPNIVTYSSLIKA 541

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           Y + G  +   S+  +M+  GI  + +   ALLR++ +  ++        I+  E  +P 
Sbjct: 542 YGDVGLWEKAESVFKLMLRVGIRPNPQACCALLRAYGKGKELEKV-----IIFFESMEPQ 596

Query: 397 L------ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDK 450
                   +   +  A    G+  +A    D M   G  PD     ++I  Y     +DK
Sbjct: 597 YGVEPDKYAYAAIFWACWTCGEWQRAVKYIDRMEMAGCTPDSVIYTTLINMYEANGQIDK 656

Query: 451 ALNLL 455
           A+ +L
Sbjct: 657 AMQVL 661



 Score = 43.1 bits (100), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 76/180 (42%), Gaps = 7/180 (3%)

Query: 368 LLRSFAQCGDVRGAGQITN----IMRIEE---FQPTLESCTLLVEAYGQAGDPDQARSNF 420
           +L + A+   VR A +  N    +M+I      +  + S  ++V   GQ  +   A   F
Sbjct: 146 ILHNLAKAVAVRVASEKLNSDEDVMKIVNETGLRVDVRSMNVVVWQLGQMQNWYAATKVF 205

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
                 G +P+     ++IAA G    L +AL L   +EK G E    T+  L+   GR 
Sbjct: 206 RAFRSAGVEPNAYVCTTLIAALGCGRRLSQALKLFRWMEKAGIERPIFTFNALMVACGRC 265

Query: 481 QLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF 540
              + A +L  ++ +LG  P       L      AG+  +A   +  ++A+   +G  ++
Sbjct: 266 ASGDTAVELFEEMEKLGIVPDRITFTGLVSATTAAGLWDRAQSFIDMMQARGFSIGLHEY 325


>gi|22128587|gb|AAM52339.1| fertility restorer [Petunia x hybrida]
          Length = 592

 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 152/346 (43%), Gaps = 36/346 (10%)

Query: 185 KPITGKCKLITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKV 243
           KP T    ++ D        +  + LL E K+  + P  I + +L+D L + +     + 
Sbjct: 210 KPDTCIYNIVIDAFCKDGMLDGATSLLNEMKQKNIPPDIITYTSLIDGLGKLSQWEKVRT 269

Query: 244 AELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS 303
             L +   +   +V  ++ +ID   KE  +EDAE I+  M E G+ P+ +T  V++  Y 
Sbjct: 270 LFLEMIHLNIYPDVCTFNSVIDGLCKEGKVEDAEEIMTYMIEKGVEPNEITYNVVMDGYC 329

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363
             G + RA+  F+S+   G +PD   Y ++I  YV   +    M L   +  +G++ S  
Sbjct: 330 LRGQMGRARRIFDSMIDKGIEPDIISYTALINGYVEKKKMDKAMQLFREISQNGLKPSIV 389

Query: 364 IYLALLRSFAQCG----------DVRGAGQITNIMR-----------------IEEFQ-- 394
               LLR   + G          +++ AG I N+                   +  F   
Sbjct: 390 TCSVLLRGLFEVGRTECAKIFFDEMQAAGHIPNLYTHCTLLGGYFKNGLVEEAMSHFHKL 449

Query: 395 ------PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLL 448
                   ++  T ++    + G  D+A + F+ +  +G  PD     +MI+ Y ++ LL
Sbjct: 450 ERRREDTNIQIYTAVINGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLL 509

Query: 449 DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
           D+A ++L ++E +G  P   TY V+V    R   ++E +  L +I+
Sbjct: 510 DEAKDMLRKMEDNGCLPDNRTYNVIVRGFFRSSKVSEMKAFLKEIA 555



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 79/343 (23%), Positives = 145/343 (42%), Gaps = 37/343 (10%)

Query: 216 ELLQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
            + +P  + +  ++D L ++ +TQ  F +  L + +   + +   Y+ +IDA  K+  L+
Sbjct: 172 NICEPDEVMYGTVMDGLCKKGHTQKAFDLLRL-MEQGITKPDTCIYNIVIDAFCKDGMLD 230

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
            A  +L +M +  I PDI+T T L+    K    ++ +  F  +      PD   +NS+I
Sbjct: 231 GATSLLNEMKQKNIPPDIITYTSLIDGLGKLSQWEKVRTLFLEMIHLNIYPDVCTFNSVI 290

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
                 G+ +    ++  MI  G+E +E  Y                             
Sbjct: 291 DGLCKEGKVEDAEEIMTYMIEKGVEPNEITY----------------------------- 321

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
                  ++++ Y   G   +AR  FD MI  G +PD     ++I  Y +K  +DKA+ L
Sbjct: 322 ------NVVMDGYCLRGQMGRARRIFDSMIDKGIEPDIISYTALINGYVEKKKMDKAMQL 375

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
             E+ ++G +P   T +VL+  L  +     A+    ++   G  P      +L   Y +
Sbjct: 376 FREISQNGLKPSIVTCSVLLRGLFEVGRTECAKIFFDEMQAAGHIPNLYTHCTLLGGYFK 435

Query: 515 AGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQ 557
            G+ ++A+     LE ++E      +  +INGL   G L  A 
Sbjct: 436 NGLVEEAMSHFHKLERRREDTNIQIYTAVINGLCKNGKLDKAH 478



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/307 (22%), Positives = 138/307 (44%), Gaps = 8/307 (2%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + +++   ++  Y+ LID   K +  E    +  +M    I PD+ T   ++    K G 
Sbjct: 239 MKQKNIPPDIITYTSLIDGLGKLSQWEKVRTLFLEMIHLNIYPDVCTFNSVIDGLCKEGK 298

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           ++ A+E    +   G +P++  YN ++  Y   GQ      + D MI  GIE     Y A
Sbjct: 299 VEDAEEIMTYMIEKGVEPNEITYNVVMDGYCLRGQMGRARRIFDSMIDKGIEPDIISYTA 358

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+  + +   +  A Q+   +     +P++ +C++L+    + G  + A+  FD M   G
Sbjct: 359 LINGYVEKKKMDKAMQLFREISQNGLKPSIVTCSVLLRGLFEVGRTECAKIFFDEMQAAG 418

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
           H P+     +++  Y K  L+++A++   +LE+   +     YT +++ L +   +++A 
Sbjct: 419 HIPNLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVINGLCKNGKLDKAH 478

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG--PDDFERIIN 545
               K+  +G  P      ++   Y + G+  +A   L     K E  G  PD+  R  N
Sbjct: 479 ATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDML----RKMEDNGCLPDN--RTYN 532

Query: 546 GLLAGGF 552
            ++ G F
Sbjct: 533 VIVRGFF 539



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 123/285 (43%), Gaps = 7/285 (2%)

Query: 287 GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL-RSHGFQPDKKVYNSMIMAYVNAGQPKL 345
           GI  + VT T L+        +  A   F+ L R +  +PD+ +Y +++      G  + 
Sbjct: 137 GIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVRENICEPDEVMYGTVMDGLCKKGHTQK 196

Query: 346 GMSLVDMMITSGIERSEE-IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
              L+ +M   GI + +  IY  ++ +F + G + GA  + N M+ +   P + + T L+
Sbjct: 197 AFDLLRLM-EQGITKPDTCIYNIVIDAFCKDGMLDGATSLLNEMKQKNIPPDIITYTSLI 255

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
           +  G+    ++ R+ F  MI L   PD     S+I    K+  ++ A  ++  + + G E
Sbjct: 256 DGLGKLSQWEKVRTLFLEMIHLNIYPDVCTFNSVIDGLCKEGKVEDAEEIMTYMIEKGVE 315

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQA 524
           P   TY V++D       +  A ++   + + G  P      +L + Y       KA+Q 
Sbjct: 316 PNEITYNVVMDGYCLRGQMGRARRIFDSMIDKGIEPDIISYTALINGYVEKKKMDKAMQL 375

Query: 525 LGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQG 567
             F E  +  + P       ++ GL   G  + A+     M+A G
Sbjct: 376 --FREISQNGLKPSIVTCSVLLRGLFEVGRTECAKIFFDEMQAAG 418



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 63/310 (20%), Positives = 125/310 (40%), Gaps = 1/310 (0%)

Query: 272 CLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYN 331
           CL+DA  + ++M     +P  V+ + L+       +       F  +       D    +
Sbjct: 52  CLDDAFSLFRQMVTTKPLPSAVSFSKLLKALVHMKHYSSVVSIFREIHKLRIPVDAFALS 111

Query: 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQI-TNIMRI 390
           +++ +     +  LG S++ +    GI  +E  +  L+R       V+ A  +   ++R 
Sbjct: 112 TVVNSCCLMHRTDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVRE 171

Query: 391 EEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDK 450
              +P       +++   + G   +A      M +   KPD      +I A+ K  +LD 
Sbjct: 172 NICEPDEVMYGTVMDGLCKKGHTQKAFDLLRLMEQGITKPDTCIYNIVIDAFCKDGMLDG 231

Query: 451 ALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCD 510
           A +LL E+++    P   TYT L+D LG+L    +   L  ++  L   P      S+ D
Sbjct: 232 ATSLLNEMKQKNIPPDIITYTSLIDGLGKLSQWEKVRTLFLEMIHLNIYPDVCTFNSVID 291

Query: 511 MYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAA 570
              + G  + A + + ++  K  +     +  +++G    G +  A+R+   M  +G   
Sbjct: 292 GLCKEGKVEDAEEIMTYMIEKGVEPNEITYNVVMDGYCLRGQMGRARRIFDSMIDKGIEP 351

Query: 571 SERLKVALIS 580
                 ALI+
Sbjct: 352 DIISYTALIN 361


>gi|293333002|ref|NP_001168049.1| uncharacterized protein LOC100381779 [Zea mays]
 gi|223945693|gb|ACN26930.1| unknown [Zea mays]
 gi|414871082|tpg|DAA49639.1| TPA: hypothetical protein ZEAMMB73_603879 [Zea mays]
          Length = 582

 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 109/232 (46%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L  E  Q +V  Y+ LI A  K  CL+DA+ IL +++  G+ P+  T  +L+H       
Sbjct: 289 LDLEGCQPHVVSYNTLISASCKAGCLKDAKLILTRLSAEGLEPNGTTYCILLHSLCDKRR 348

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
                +    ++    +PD   YN  I  +   G     + +++MM++         Y  
Sbjct: 349 WSEVGDLLAHMKQANHKPDVTAYNIFINYFCRYGHLDQAIDVLEMMVSEKCFPDIVTYNT 408

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           LL + ++ G V+ A  I + +R    Q    +   L++A  + GD   A + FD MI  G
Sbjct: 409 LLNAISKRGMVQEALGIFHSIRENGCQVVRITYNTLIDALAKRGDIINAMTLFDEMIVDG 468

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
             PDD    S+I  + KKN+  +AL LL ++   GFE    T+++++  L +
Sbjct: 469 INPDDVTYGSLIMGFCKKNMAKEALELLNQMLALGFEVKATTFSMMIQALCK 520



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 139/347 (40%), Gaps = 14/347 (4%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++ LI      +  + A    K+  + G  P  +TST+LV +  K     RA E  + L 
Sbjct: 231 FNTLIRCMCSHHLYDRAVSFWKEQLKIGWPPYEMTSTLLVDLICKQCGPMRALEVLDELD 290

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G QP    YN++I A   AG  K    ++  +   G+E +   Y  LL S        
Sbjct: 291 LEGCQPHVVSYNTLISASCKAGCLKDAKLILTRLSAEGLEPNGTTYCILLHSLCDKRRWS 350

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
             G +   M+    +P + +  + +  + + G  DQA    + M+     PD     +++
Sbjct: 351 EVGDLLAHMKQANHKPDVTAYNIFINYFCRYGHLDQAIDVLEMMVSEKCFPDIVTYNTLL 410

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            A  K+ ++ +AL +   + ++G +    TY  L+D L +   I  A  L  ++   G  
Sbjct: 411 NAISKRGMVQEALGIFHSIRENGCQVVRITYNTLIDALAKRGDIINAMTLFDEMIVDGIN 470

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P      SL   + +  + K+AL+ L  + A   ++    F  +I  L  G   + A  +
Sbjct: 471 PDDVTYGSLIMGFCKKNMAKEALELLNQMLALGFEVKATTFSMMIQALCKGCKAEAAAEI 530

Query: 560 HGLMEAQG--------------FAASERLKVALISSQTFNRQRQPTR 592
             +M ++                A S RLK A I  Q   R R   R
Sbjct: 531 LRVMVSRNVNHRSAFYLSIVTRVAKSGRLKEAQILHQELYRARSLKR 577



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 118/299 (39%), Gaps = 4/299 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+  +  H     L  A RI+ +M  +G VPD      L+    + GN ++A+   E + 
Sbjct: 126 YAYSLRRHCNNGKLIQACRIIDEMVLHGQVPDSKCCVRLIRGLVRTGNTNKARHVLEVMV 185

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  PD    N +I      GQ    M +++ M  +G   S   +  L+R         
Sbjct: 186 LSGGVPDTITCNMLIGQLCCEGQLSSAMKVLEDMRFTGCSPSGITFNTLIRCMCSHHLYD 245

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A           + P   + TLLV+   +   P +A    D +   G +P      ++I
Sbjct: 246 RAVSFWKEQLKIGWPPYEMTSTLLVDLICKQCGPMRALEVLDELDLEGCQPHVVSYNTLI 305

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
           +A  K   L  A  +L  L  +G EP   TY +L+  L   +  +E   LL  + +    
Sbjct: 306 SASCKAGCLKDAKLILTRLSAEGLEPNGTTYCILLHSLCDKRRWSEVGDLLAHMKQANHK 365

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDA 556
           P         + + R G   +A+  L  + +  E+  PD   +  ++N +   G +Q+A
Sbjct: 366 PDVTAYNIFINYFCRYGHLDQAIDVLEMMVS--EKCFPDIVTYNTLLNAISKRGMVQEA 422



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/218 (21%), Positives = 91/218 (41%), Gaps = 2/218 (0%)

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
           Y   LR     G +  A +I + M +    P  + C  L+    + G+ ++AR   + M+
Sbjct: 126 YAYSLRRHCNNGKLIQACRIIDEMVLHGQVPDSKCCVRLIRGLVRTGNTNKARHVLEVMV 185

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
             G  PD      +I     +  L  A+ +L ++   G  P   T+  L+  +    L +
Sbjct: 186 LSGGVPDTITCNMLIGQLCCEGQLSSAMKVLEDMRFTGCSPSGITFNTLIRCMCSHHLYD 245

Query: 485 EAEQLLGKISELGEAPPFKIQVS-LCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERI 543
            A     +  ++G  PP+++  + L D+  +     +AL+ L  L+ +  Q     +  +
Sbjct: 246 RAVSFWKEQLKIGW-PPYEMTSTLLVDLICKQCGPMRALEVLDELDLEGCQPHVVSYNTL 304

Query: 544 INGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
           I+     G L+DA+ +   + A+G   +      L+ S
Sbjct: 305 ISASCKAGCLKDAKLILTRLSAEGLEPNGTTYCILLHS 342


>gi|296088147|emb|CBI35592.3| unnamed protein product [Vitis vinifera]
          Length = 883

 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 75/330 (22%), Positives = 143/330 (43%), Gaps = 4/330 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ LID   +E  +E+A  + +KM ++G+ P I+T   L++ Y K G +  A +  
Sbjct: 334 NVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLL 393

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +     +P+ + YN ++       +      L+  ++ +G+      Y  L+  F + 
Sbjct: 394 SVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKE 453

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A  I N M     +P   + T L++   + G  +QA      M++ G   D+   
Sbjct: 454 GQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTF 513

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I  + K         L   + ++       T+   +D LG+   +NEA  +LGK+ +
Sbjct: 514 TALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMK 573

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFL 553
            G  P       L + + RAG    +L+ L     K+    P+   +  IINGL   G +
Sbjct: 574 YGLVPSVVTHTILIEGHCRAGETALSLKMLE--RMKQAGCSPNVYTYTIIINGLCNNGRV 631

Query: 554 QDAQRVHGLMEAQGFAASERLKVALISSQT 583
           ++A+ +   M + G + +      L+ +  
Sbjct: 632 EEAETILFSMSSFGVSPNHFTYAVLVKAHV 661



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 140/310 (45%), Gaps = 4/310 (1%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           V+ + + + N+R Y++L++   + +    A  +L+++ +NG++PD VT  +LV  + K G
Sbjct: 395 VMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEG 454

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            L+ A   F S+ S G +PD   + ++I      G+ +    ++  M+  GI   E  + 
Sbjct: 455 QLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFT 514

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           AL+    + G  +    +   M       T  +    ++A G+    ++A +    M++ 
Sbjct: 515 ALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKY 574

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G  P       +I  + +      +L +L  +++ G  P   TYT++++ L     + EA
Sbjct: 575 GLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEA 634

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
           E +L  +S  G +P       L   + +AG   +A Q +  +     Q  P+    I + 
Sbjct: 635 ETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQ--PN--SHIYSA 690

Query: 547 LLAGGFLQDA 556
           LL+G  L + 
Sbjct: 691 LLSGFVLSNT 700



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 142/345 (41%), Gaps = 4/345 (1%)

Query: 243 VAELV---LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLV 299
           VA LV   +  E F     DY  +++A  K   ++ AE    K+   G   D    T LV
Sbjct: 177 VAFLVYRRMVNEGFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLV 236

Query: 300 HMYSKAGNLDRAKEAFESL-RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
               +  +L  A   FE + +    +P+   Y+ +I     AG+ +    L   M+  G 
Sbjct: 237 LANCRRDDLGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGC 296

Query: 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418
           + S   Y  L+++    G    A ++ + M  +   P + + T+L++   + G  ++A  
Sbjct: 297 QPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANG 356

Query: 419 NFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLG 478
            F  M++ G  P      ++I  Y K+  +  A  LL  +EK   +P   TY  L++ L 
Sbjct: 357 VFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLC 416

Query: 479 RLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
           R+    +A  LL ++ + G  P       L D + + G    A      + +   +    
Sbjct: 417 RVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGF 476

Query: 539 DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQT 583
            F  +I+GL   G L+ A  + G M  +G +  E    ALI    
Sbjct: 477 TFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHC 521



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 75/343 (21%), Positives = 138/343 (40%)

Query: 241 FKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
           F+V E +  EE+ + N   YS LI    +   LE+A ++ ++M E G  P   T TVL+ 
Sbjct: 249 FRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIK 308

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
                G  D+A +  + + +    P+   Y  +I      G+ +    +   M+  G+  
Sbjct: 309 AKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCP 368

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
               + AL+  + + G V  A Q+ ++M     +P + +   L+E   +     +A    
Sbjct: 369 GIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLL 428

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
             ++  G  PD      ++  + K+  L+ A N+   +   G EP   T+T L+D L +L
Sbjct: 429 RRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKL 488

Query: 481 QLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF 540
             + +A  +LG + + G +       +L D + + G  K        +   +       F
Sbjct: 489 GRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTF 548

Query: 541 ERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQT 583
              ++ L     L +A  + G M   G   S      LI    
Sbjct: 549 NCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHC 591



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 114/261 (43%), Gaps = 27/261 (10%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  ++ LI+ H +      + ++L++M + G  P++ T T++++     G ++ A+   
Sbjct: 579 SVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETIL 638

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
            S+ S G  P+   Y  ++ A+V AG+      +V  M+ +G + +  IY ALL  F   
Sbjct: 639 FSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLS 698

Query: 376 GDVRGAGQITNIMRIEEFQ--------------------PTLESCTLLVEAYGQAGDPDQ 415
               GA  +++   ++                       PT +    LV    + G   +
Sbjct: 699 NTAIGARALSSTGDLDARSLSSEENDNNCLSNEIKKCGVPTEDLYNFLVVGLCKEGRIIE 758

Query: 416 ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
           A      M++ G  PD +  +S+I  Y K    D  L  +  +  + F P  A+Y  ++ 
Sbjct: 759 ADQLTQDMVKHGLFPD-KAISSIIEHYCKTCKYDNCLEFMKLVLDNKFVPSFASYCWVIH 817

Query: 476 WL---GRLQLINEAEQLLGKI 493
            L   GR+Q   EA++L+  +
Sbjct: 818 GLRNEGRVQ---EAQKLVSDL 835


>gi|224144580|ref|XP_002325338.1| predicted protein [Populus trichocarpa]
 gi|222862213|gb|EEE99719.1| predicted protein [Populus trichocarpa]
          Length = 481

 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 133/295 (45%)

Query: 287 GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLG 346
           G +P ++  T+L+ +  K     RA E  E +   G  PD   YNS++      G+ +  
Sbjct: 157 GCLPYLIPYTILIELVWKHCGTVRALEVLEDMAIEGCYPDLVTYNSLVNFASKEGKYEDA 216

Query: 347 MSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA 406
             ++  +++ G+E +   Y +LL S   CG      +I  IM+     PT+ +  +L+  
Sbjct: 217 ALIIYNILSHGMEPNAITYNSLLHSLCSCGLWDEVDEILAIMKKTSHPPTVVTYNILING 276

Query: 407 YGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG 466
             + G  ++A + F  M+     PD     +++ A  K+ ++D+AL + + L      PG
Sbjct: 277 LCKCGLVERAINFFVQMVSENCSPDIITYNTLLTALCKEGMVDEALQVFVLLSDSNCSPG 336

Query: 467 PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALG 526
             TY  ++D L R   ++EA +L  ++ E G AP      SL   +      + A++ L 
Sbjct: 337 LITYNTVIDGLTRRGYMDEALKLYNQMIEKGIAPDGITHRSLVWGFCWIDQVEDAVEILR 396

Query: 527 FLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
            +  +  ++    +  +INGL     +  A +V  +M +  +   E +   LI S
Sbjct: 397 EMGKRDHRINSSAYRLVINGLCRNKRVDIAIQVLEMMISGRYKPDEEIYSTLIKS 451



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 128/298 (42%), Gaps = 2/298 (0%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           +E A R+LK M  +G+VPD++T  ++V  + K   L  A +  E +   G  PD   YN+
Sbjct: 73  IERASRVLKTMVMSGLVPDVITYNMMVGGFCKRRQLRSAIDLLEDMSLSGCPPDVITYNT 132

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR-SFAQCGDVRGAGQITNIMRIE 391
           +I +  + G+    +      +  G       Y  L+   +  CG VR A ++   M IE
Sbjct: 133 IIRSLFDNGKFDQAVEFWRGQLRRGCLPYLIPYTILIELVWKHCGTVR-ALEVLEDMAIE 191

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
              P L +   LV    + G  + A      ++  G +P+     S++ +     L D+ 
Sbjct: 192 GCYPDLVTYNSLVNFASKEGKYEDAALIIYNILSHGMEPNAITYNSLLHSLCSCGLWDEV 251

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
             +L  ++K    P   TY +L++ L +  L+  A     ++     +P      +L   
Sbjct: 252 DEILAIMKKTSHPPTVVTYNILINGLCKCGLVERAINFFVQMVSENCSPDIITYNTLLTA 311

Query: 512 YARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
             + G+  +ALQ    L       G   +  +I+GL   G++ +A +++  M  +G A
Sbjct: 312 LCKEGMVDEALQVFVLLSDSNCSPGLITYNTVIDGLTRRGYMDEALKLYNQMIEKGIA 369



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/262 (21%), Positives = 113/262 (43%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L++  +KE   EDA  I+  +  +G+ P+ +T   L+H     G  D   E    ++
Sbjct: 200 YNSLVNFASKEGKYEDAALIIYNILSHGMEPNAITYNSLLHSLCSCGLWDEVDEILAIMK 259

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
                P    YN +I      G  +  ++    M++         Y  LL +  + G V 
Sbjct: 260 KTSHPPTVVTYNILINGLCKCGLVERAINFFVQMVSENCSPDIITYNTLLTALCKEGMVD 319

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A Q+  ++      P L +   +++   + G  D+A   ++ MI  G  PD     S++
Sbjct: 320 EALQVFVLLSDSNCSPGLITYNTVIDGLTRRGYMDEALKLYNQMIEKGIAPDGITHRSLV 379

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             +   + ++ A+ +L E+ K       + Y ++++ L R + ++ A Q+L  +      
Sbjct: 380 WGFCWIDQVEDAVEILREMGKRDHRINSSAYRLVINGLCRNKRVDIAIQVLEMMISGRYK 439

Query: 500 PPFKIQVSLCDMYARAGIEKKA 521
           P  +I  +L    A AG+ ++A
Sbjct: 440 PDEEIYSTLIKSVADAGMVEEA 461



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 99/236 (41%), Gaps = 4/236 (1%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAEL--VLSEESFQTNVRDYSKLIDAHAKENCLED 275
           ++P+ I + +LL  L   +  L+ +V E+  ++ + S    V  Y+ LI+   K   +E 
Sbjct: 228 MEPNAITYNSLLHSL--CSCGLWDEVDEILAIMKKTSHPPTVVTYNILINGLCKCGLVER 285

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A     +M      PDI+T   L+    K G +D A + F  L      P    YN++I 
Sbjct: 286 AINFFVQMVSENCSPDIITYNTLLTALCKEGMVDEALQVFVLLSDSNCSPGLITYNTVID 345

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
                G     + L + MI  GI      + +L+  F     V  A +I   M   + + 
Sbjct: 346 GLTRRGYMDEALKLYNQMIEKGIAPDGITHRSLVWGFCWIDQVEDAVEILREMGKRDHRI 405

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
              +  L++    +    D A    + MI   +KPD+   +++I +     ++++A
Sbjct: 406 NSSAYRLVINGLCRNKRVDIAIQVLEMMISGRYKPDEEIYSTLIKSVADAGMVEEA 461



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 71/142 (50%), Gaps = 6/142 (4%)

Query: 246 LVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKA 305
           ++LS+ +    +  Y+ +ID   +   +++A ++  +M E GI PD +T   LV  +   
Sbjct: 326 VLLSDSNCSPGLITYNTVIDGLTRRGYMDEALKLYNQMIEKGIAPDGITHRSLVWGFCW- 384

Query: 306 GNLDRAKEAFESLRSHG---FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE 362
             +D+ ++A E LR  G    + +   Y  +I       +  + + +++MMI+   +  E
Sbjct: 385 --IDQVEDAVEILREMGKRDHRINSSAYRLVINGLCRNKRVDIAIQVLEMMISGRYKPDE 442

Query: 363 EIYLALLRSFAQCGDVRGAGQI 384
           EIY  L++S A  G V  A ++
Sbjct: 443 EIYSTLIKSVADAGMVEEADEL 464


>gi|147768815|emb|CAN62672.1| hypothetical protein VITISV_031896 [Vitis vinifera]
          Length = 530

 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 138/320 (43%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           E FQ +V  Y  L++   K      A R+L+ M +    P+++    ++    K   +  
Sbjct: 211 EGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTE 270

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A   F  + + G  PD   YNS+I A  N  + K   +L++ M+ S I  +  ++  ++ 
Sbjct: 271 AFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVD 330

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
           +  + G +  A  + ++M     +P + + T L++ +    + D+A   FD M+  G  P
Sbjct: 331 ALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVP 390

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           + R    +I  Y +   +DKA+ LL ++   G      TY  L+  L  +  +  A  L 
Sbjct: 391 NVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALF 450

Query: 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAG 550
            ++   G+ P       L D   +     +A+  L  +E          +   I+G+   
Sbjct: 451 HEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRA 510

Query: 551 GFLQDAQRVHGLMEAQGFAA 570
           G L+ A+ +   +  QGFAA
Sbjct: 511 GELEAARDLFSNLSCQGFAA 530



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 67/315 (21%), Positives = 123/315 (39%), Gaps = 6/315 (1%)

Query: 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318
           D++KL+ + AK         +  +M+  GI PD+ T  +L++ +     L  A      L
Sbjct: 114 DFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKL 173

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
              G QPD   +N++I      G+    + L D  I  G +     Y  L+    + G+ 
Sbjct: 174 LKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNT 233

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             A ++   M  +  +P + +   ++++  +     +A + F  MI  G  PD     S+
Sbjct: 234 SAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSL 293

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           I A            LL E+      P    ++ +VD L +  +I  A  ++  + + G 
Sbjct: 294 IHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGV 353

Query: 499 APPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQR 558
            P      +L D +       +A++    +  K        +  +ING      +Q   +
Sbjct: 354 EPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQ---IQRMDK 410

Query: 559 VHGLME---AQGFAA 570
             GL+E    QG  A
Sbjct: 411 AMGLLEQMSLQGLIA 425



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/159 (21%), Positives = 76/159 (47%), Gaps = 13/159 (8%)

Query: 211 LAEWKEL-----------LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVR 258
           L EWK +           + P+ + +  ++D L +E    +   V ++++ +   + +V 
Sbjct: 300 LCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMI-KRGVEPDVV 358

Query: 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318
            Y+ L+D H   + +++A ++   M   G VP++ +  +L++ Y +   +D+A    E +
Sbjct: 359 TYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQM 418

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG 357
              G   D   YN++I    + G+ +  ++L   M+ SG
Sbjct: 419 SLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASG 457



 Score = 45.4 bits (106), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 49/247 (19%), Positives = 93/247 (37%)

Query: 271 NCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVY 330
           N L+DA     +M      P  V  T L+   +K  +          + S G  PD    
Sbjct: 91  NTLDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTL 150

Query: 331 NSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRI 390
           N +I ++ +  +     S++  ++  G +     +  L+R     G +  A  + +    
Sbjct: 151 NILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIG 210

Query: 391 EEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDK 450
           E FQP + +   L+    + G+   A      M++   +P+     ++I +  K   + +
Sbjct: 211 EGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTE 270

Query: 451 ALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCD 510
           A NL  E+   G  P   TY  L+  L  L        LL ++      P   +  ++ D
Sbjct: 271 AFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVD 330

Query: 511 MYARAGI 517
              + G+
Sbjct: 331 ALCKEGM 337


>gi|326523953|dbj|BAJ96987.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1092

 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 140/330 (42%), Gaps = 39/330 (11%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+  I    +   LE+A RIL+KM E G  PD+VT+TVL+ +   AG L  AK+ F
Sbjct: 240 NVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDAGRLADAKDVF 299

Query: 316 ESLRSHGFQPDKKVY----------------------------NSMIMAYVNA------- 340
             +++   +PD+  Y                            N  +++Y  A       
Sbjct: 300 WKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYTAAVDALCQV 359

Query: 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
           G+    + + D M   GI   +  Y +L+  F +      A ++ N M I    P   + 
Sbjct: 360 GRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALELFNHMNIHGPTPNGYTH 419

Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
            L +  +G++G+  +A   ++ M   G  PD     +++    K   L  A  +  EL+ 
Sbjct: 420 VLFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKA 479

Query: 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKK 520
            G  P   TYT+++    +    +EA ++  ++ E   AP      SL DM  +AG   +
Sbjct: 480 MGISPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLIDMLYKAGRGNE 539

Query: 521 ALQALGFLEAKKEQMGPDDFERIINGLLAG 550
           A +   F E K+  + P D     N LLAG
Sbjct: 540 AWKI--FYELKEMNLEPTDC--TYNTLLAG 565



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 146/340 (42%), Gaps = 4/340 (1%)

Query: 219 QPSRIDWINLLDRLREQNTQLYFKVAEL--VLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           +P R+ +I LLD+  +        V+E+   L  + +  NV  Y+  +DA  +   +++A
Sbjct: 308 KPDRVTYITLLDKCGDSGDSR--SVSEIWNALKADGYNDNVVSYTAAVDALCQVGRVDEA 365

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
             +  +M + GI+P   +   L+  + KA   +RA E F  +  HG  P+   +   I  
Sbjct: 366 LDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALELFNHMNIHGPTPNGYTHVLFINY 425

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           +  +G+    +   ++M + GI        A+L   A+ G +  A ++ + ++     P 
Sbjct: 426 HGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPD 485

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
             + T++++   +A + D+A   F  MI     PD     S+I    K    ++A  +  
Sbjct: 486 NITYTMMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLIDMLYKAGRGNEAWKIFY 545

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
           EL++   EP   TY  L+  LGR   + E  QLL  ++     P      ++ D   + G
Sbjct: 546 ELKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYNTVLDCLCKNG 605

Query: 517 IEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDA 556
               AL  L  +           +  ++ GL+  G L +A
Sbjct: 606 EVNYALDMLYSMTMNGCMPDLSSYNTVMYGLVKEGRLDEA 645



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 118/267 (44%)

Query: 260  YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
            Y  ++DA  K   +ED  +I ++M+  G     VT   ++    K+  LD A   +  L 
Sbjct: 804  YHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLM 863

Query: 320  SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
            S GF P    Y  ++   +  G  +   +L D M+  G E +  IY  LL  +   GD  
Sbjct: 864  SEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTE 923

Query: 380  GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
               ++   M  +   P ++S T++++     G  +   S F  +  +G +PD      +I
Sbjct: 924  KVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLI 983

Query: 440  AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
               GK   L++AL+L  ++EK G  P   TY  L+ +LG+     EA ++  ++   G  
Sbjct: 984  HGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWK 1043

Query: 500  PPFKIQVSLCDMYARAGIEKKALQALG 526
            P      +L   Y+ +G  + A  A G
Sbjct: 1044 PNVFTYNALIRGYSVSGSPENAFAAYG 1070



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 103/243 (42%), Gaps = 5/243 (2%)

Query: 231  RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVP 290
            ++ ++   LY++     L  E F      Y  L+D   K+  +EDAE +  +M E G  P
Sbjct: 850  KMLDEAINLYYQ-----LMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEP 904

Query: 291  DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV 350
            +     +L++ Y  AG+ ++  E FES+   G  PD K Y  +I      G+   G+S  
Sbjct: 905  NCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYF 964

Query: 351  DMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410
              +   G+E     Y  L+    + G +  A  + N M  +   P L +   L+   G+A
Sbjct: 965  KQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKA 1024

Query: 411  GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATY 470
            G   +A   ++ ++  G KP+     ++I  Y      + A      +   G  P  +TY
Sbjct: 1025 GKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSPENAFAAYGRMIVGGCRPNSSTY 1084

Query: 471  TVL 473
              L
Sbjct: 1085 MQL 1087



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 100/424 (23%), Positives = 168/424 (39%), Gaps = 83/424 (19%)

Query: 210 LLAEWKEL-LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAH 267
           +  E KE+ L+P+   +  LL  L RE   +   ++ E  ++  SF  N+  Y+ ++D  
Sbjct: 543 IFYELKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLE-GMNSNSFPPNIITYNTVLDCL 601

Query: 268 AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA---------------- 311
            K   +  A  +L  M  NG +PD+ +   +++   K G LD A                
Sbjct: 602 CKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMYGLVKEGRLDEAFWMFCQMKKVLAPDYA 661

Query: 312 ---------------KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLG----MSLVDM 352
                          KEA  ++R +  QPD KV  S + + +     + G    +   + 
Sbjct: 662 TVCTILPSFVRSGLMKEALHTVREYILQPDSKVDRSSVHSLMEGILKRDGTEKSIEFAEN 721

Query: 353 MITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGD 412
           + +SG+   +     ++R F +  +   A ++  + + E    +L++ +      G   +
Sbjct: 722 IASSGLLLDDLFLSPIIRHFCKHKEALAAHEL--VKKFENLGVSLKTGSYNALICGLVDE 779

Query: 413 P--DQARSNFDYMIRLGHKPDDRCTASMIAAYG--------------------------- 443
              D A   F  M RLG  PD+     ++ A G                           
Sbjct: 780 DLIDIAEELFSEMKRLGCDPDEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTY 839

Query: 444 --------KKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
                   K  +LD+A+NL  +L  +GF P P TY  L+D L +   I +AE L  ++ E
Sbjct: 840 NTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLE 899

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ-MGPD--DFERIINGLLAGGF 552
            G  P   I   L + Y  AG  +K  +     E+  EQ M PD   +  +I+ L A G 
Sbjct: 900 CGCEPNCAIYNILLNGYRIAGDTEKVCE---LFESMVEQGMNPDIKSYTVVIDTLCADGR 956

Query: 553 LQDA 556
           L D 
Sbjct: 957 LNDG 960



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 74/325 (22%), Positives = 136/325 (41%), Gaps = 2/325 (0%)

Query: 245  ELVLSEESFQTNVR--DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMY 302
            ELV   E+   +++   Y+ LI     E+ ++ AE +  +M   G  PD  T  +++   
Sbjct: 752  ELVKKFENLGVSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAM 811

Query: 303  SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE 362
             K+  ++   +  E + + G++     YN++I   V +      ++L   +++ G   + 
Sbjct: 812  GKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTP 871

Query: 363  EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
              Y  LL    + G++  A  + + M     +P      +L+  Y  AGD ++    F+ 
Sbjct: 872  CTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFES 931

Query: 423  MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
            M+  G  PD +    +I        L+  L+   +L   G EP   TY +L+  LG+   
Sbjct: 932  MVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGR 991

Query: 483  INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFER 542
            + EA  L   + + G AP      SL     +AG   +A +    L AK  +     +  
Sbjct: 992  LEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNA 1051

Query: 543  IINGLLAGGFLQDAQRVHGLMEAQG 567
            +I G    G  ++A   +G M   G
Sbjct: 1052 LIRGYSVSGSPENAFAAYGRMIVGG 1076



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 77/360 (21%), Positives = 145/360 (40%), Gaps = 39/360 (10%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++  +  + NV  +  +  A   E  L  A   L  M E GIV +  T   L++   K+G
Sbjct: 126 LMQRQIIKANVGTFCTVFGAVGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLIYFLVKSG 185

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
               A + ++++ + G  P  + Y+ +++A+      +  + L+  M   G+  +   Y 
Sbjct: 186 FDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGLLGEMEARGVRPNVYSYT 245

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
             +R   Q G +  A +I   M  E  +P + + T+L++    AG    A+  F  M   
Sbjct: 246 ICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDAGRLADAKDVFWKMKAS 305

Query: 427 GHKPD--------DRCTAS---------------------------MIAAYGKKNLLDKA 451
             KPD        D+C  S                            + A  +   +D+A
Sbjct: 306 DQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYTAAVDALCQVGRVDEA 365

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
           L++  E+++ G  P   +Y  L+    +    N A +L   ++  G  P     V   + 
Sbjct: 366 LDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALELFNHMNIHGPTPNGYTHVLFINY 425

Query: 512 YARAGIEKKALQALGFLEAKKEQMGPDDF--ERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
           + ++G   KAL+    +++K   + PD      ++ GL   G L  A+RV   ++A G +
Sbjct: 426 HGKSGESLKALKRYELMKSKG--IVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGIS 483



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 94/219 (42%), Gaps = 1/219 (0%)

Query: 268 AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK 327
           AK   L  A+R+  ++   GI PD +T T+++   SKA N D A + F  +  +   PD 
Sbjct: 462 AKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAPDV 521

Query: 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNI 387
              NS+I     AG+      +   +    +E ++  Y  LL    + G V+   Q+   
Sbjct: 522 LAMNSLIDMLYKAGRGNEAWKIFYELKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEG 581

Query: 388 MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447
           M    F P + +   +++   + G+ + A      M   G  PD     +++    K+  
Sbjct: 582 MNSNSFPPNIITYNTVLDCLCKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMYGLVKEGR 641

Query: 448 LDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           LD+A  +  +++K    P  AT   ++    R  L+ EA
Sbjct: 642 LDEAFWMFCQMKKV-LAPDYATVCTILPSFVRSGLMKEA 679



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 70/360 (19%), Positives = 133/360 (36%), Gaps = 49/360 (13%)

Query: 234 EQNTQLYFKVAE---LVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVP 290
           E+  +L+  VA    +V + ES    +    +L+ AH +   + D  ++   M    I  
Sbjct: 82  EEALELFLSVARQPRVVHTTESCNYML----ELMRAHGR---VGDVAQVFDLMQRQIIKA 134

Query: 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV 350
           ++ T   +       G L  A  A   ++  G   +   YN +I   V +G  +  M + 
Sbjct: 135 NVGTFCTVFGAVGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLIYFLVKSGFDREAMDVY 194

Query: 351 DMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410
             M   G+  +   Y  L+ +F +  D      +   M     +P + S T+ +   GQA
Sbjct: 195 KAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGLLGEMEARGVRPNVYSYTICIRVLGQA 254

Query: 411 GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATY 470
           G                                    L++A  +L ++E++G +P   T 
Sbjct: 255 GR-----------------------------------LEEAYRILRKMEEEGCKPDVVTN 279

Query: 471 TVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEA 530
           TVL+  L     + +A+ +  K+    + P     ++L D    +G  +   +    L+A
Sbjct: 280 TVLIQILCDAGRLADAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKA 339

Query: 531 KKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS----SQTFNR 586
                    +   ++ L   G + +A  V   M+ +G    +    +LIS    +  FNR
Sbjct: 340 DGYNDNVVSYTAAVDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNR 399


>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 762

 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 117/253 (46%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ +I+   KE   + A     +M +  I PD+VT + ++    K   +D+A E  
Sbjct: 195 DVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVL 254

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
            ++  +G  P+   YNS++  Y ++ QPK  +  +  M + G+E     Y +L+    + 
Sbjct: 255 TTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKN 314

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G    A +I + M     +P + +   L++ Y   G   +  +  D M+R G  PD    
Sbjct: 315 GRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVF 374

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +I AY K+  +D+A+ +  ++ + G  P   TY  ++  L +   +++A     ++ +
Sbjct: 375 NILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMID 434

Query: 496 LGEAPPFKIQVSL 508
            G  P   +  SL
Sbjct: 435 EGLTPNIIVYTSL 447



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 80/391 (20%), Positives = 153/391 (39%), Gaps = 35/391 (8%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           ++P  + + +L+D L +       +     +++   + ++  Y  L+  +A +  L +  
Sbjct: 297 VEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMH 356

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
            +L  M  NGI PD     +L+  Y+K   +D A   F  +R HG  P+   Y ++I   
Sbjct: 357 ALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGIL 416

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF------------------------- 372
             +G     M   + MI  G+  +  +Y +L+ S                          
Sbjct: 417 CKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNT 476

Query: 373 --------AQC--GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
                   + C  G V  + ++ ++M     +P + + + L++ Y  AG  D+A      
Sbjct: 477 IFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSS 536

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
           M  +G KPD     ++I  Y + + +D AL L  E+   G  P   TY +++  L   + 
Sbjct: 537 MFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRR 596

Query: 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFER 542
              A++L   I++ G          +     +  +  +AL+    L     Q+    F  
Sbjct: 597 TAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNI 656

Query: 543 IINGLLAGGFLQDAQRVHGLMEAQGFAASER 573
           +I  LL  G   +A+ +   + A G     R
Sbjct: 657 MIGALLKVGRNDEAKDLFAALSANGLVPDVR 687



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 103/235 (43%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  YS +I A  K   ++ A  +L  M +NG++P+ +T   ++H Y  +     A    
Sbjct: 230 DVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFL 289

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + +RS G +PD   YNS++      G+      + D M   G+E     Y  LL+ +A  
Sbjct: 290 KKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATK 349

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +     + ++M      P      +L+ AY +    D+A   F  M + G  P+    
Sbjct: 350 GALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTY 409

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
            ++I    K   +D A+    ++  +G  P    YT L+  L      ++AE+L+
Sbjct: 410 GAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELI 464



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 62/290 (21%), Positives = 114/290 (39%), Gaps = 39/290 (13%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +  +  + +V  Y+ L+D   K     +A +I   M + G+ PDI T   L+  Y+  G 
Sbjct: 292 MRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGA 351

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L       + +  +G  PD  V+N +I AY    +    M +   M   G+  +   Y A
Sbjct: 352 LVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGA 411

Query: 368 LLRSFAQCGDVRGA----------GQITNIMRIEEFQPTLESCTL--------------- 402
           ++    + G V  A          G   NI+       +L  C                 
Sbjct: 412 VIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSL--CIFDKWDKAEELILEMLD 469

Query: 403 ------------LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDK 450
                       ++ ++ + G   ++   FD M+R+G KP+    +++I  Y     +D+
Sbjct: 470 RGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDE 529

Query: 451 ALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
           A  LL  +   G +P   TY  L++   R+  +++A  L  ++   G +P
Sbjct: 530 ATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSP 579



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 81/185 (43%), Gaps = 1/185 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  YS LID +     +++A ++L  M   G+ PD VT   L++ Y +   +D A   F
Sbjct: 510 NVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALF 569

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + + S G  P+   YN ++    +  +      L   +  SG +     Y  +L    + 
Sbjct: 570 KEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKN 629

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
                A ++   + + + Q    +  +++ A  + G  D+A+  F  +   G  PD R T
Sbjct: 630 NLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVR-T 688

Query: 436 ASMIA 440
            S++A
Sbjct: 689 YSLMA 693



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 120/314 (38%), Gaps = 36/314 (11%)

Query: 288 IVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGM 347
           + P + T  +L+    +AG LD    A  ++   GF+ +   +  ++       +    M
Sbjct: 83  VTPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAM 142

Query: 348 SLV---------------DMMITSGI---ERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389
            +V                 ++  G+    RS+E  L LL   A   D RG G       
Sbjct: 143 DIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEA-LELLHMMA---DDRGGGS------ 192

Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD 449
                P + S T ++  + + GD D+A S +  M+     PD    +S+IAA  K   +D
Sbjct: 193 ----APDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMD 248

Query: 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLC 509
           KA+ +L  + K+G  P   TY  ++      +   EA   L K+   G  P      SL 
Sbjct: 249 KAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLM 308

Query: 510 DMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQG 567
           D   + G   +A +   F    K  + PD   +  ++ G    G L +   +  LM   G
Sbjct: 309 DYLCKNGRSTEARKI--FDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNG 366

Query: 568 FAASERLKVALISS 581
                 +   LI +
Sbjct: 367 IHPDHHVFNILICA 380



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 71/339 (20%), Positives = 128/339 (37%), Gaps = 42/339 (12%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNEN---GIVPDIVTSTVLVHMYSK 304
           ++E S   +V   + L+     EN  ++A  +L  M ++   G  PD+V+ T +++ + K
Sbjct: 149 MTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFK 208

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
            G+ D+A   +  +      PD   Y+S+I A          M ++  M+ +G+  +   
Sbjct: 209 EGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMT 268

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
           Y ++L  +      + A      MR +  +P + +   L++   + G   +AR  FD M 
Sbjct: 269 YNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSM- 327

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
                                              K G EP  ATY  L+        + 
Sbjct: 328 ----------------------------------TKRGLEPDIATYCTLLQGYATKGALV 353

Query: 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFER 542
           E   LL  +   G  P   +   L   YA+   EK     L F + ++  + P+   +  
Sbjct: 354 EMHALLDLMVRNGIHPDHHVFNILICAYAKQ--EKVDEAMLVFSKMRQHGLNPNVVTYGA 411

Query: 543 IINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
           +I  L   G + DA      M  +G   +  +  +LI S
Sbjct: 412 VIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHS 450


>gi|384247929|gb|EIE21414.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
          Length = 448

 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 135/319 (42%), Gaps = 40/319 (12%)

Query: 255 TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA 314
            NV  YS L++   K N LE A  +  ++   G  P++VT  +L+ ++ K GN   A + 
Sbjct: 106 CNVHTYSALMNVCIKANELELALDVYGQLLREGCTPNLVTYNILIDIHGKMGNWQEAVQV 165

Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
            ++L   G +P+ + YN+++ A   +GQP+  + + + M+  G                 
Sbjct: 166 LDALEDQGTKPEVRTYNTILSACNRSGQPEHALRVYERMLADGA---------------- 209

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
                              QPT  + T L+ AYG+ G  ++A   F  M+R G + +   
Sbjct: 210 -------------------QPTATTYTALISAYGKTGKIEEALRIFQDMVRRGCERNVIT 250

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
            +S+I+A  K      AL LL E+ +D  +P   T+  L+    +      A+ +  ++ 
Sbjct: 251 YSSLISACEKAGRWQLALELLDEMHRDNCKPNTVTFNALLSACAQGGQWKAAQDVFEQMP 310

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQ 554
             G  P       L   + R     +ALQAL  ++ +  +     +  +I  L   G L 
Sbjct: 311 SCGCKPDAVSYAILISAFDRGNQWCRALQALDEMQGQGHRPDVGVYNVVIEALTRSGVL- 369

Query: 555 DAQRVHGLMEAQGFAASER 573
            AQ    L  AQ F A+ R
Sbjct: 370 SAQ----LKAAQIFQAATR 384



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 93/205 (45%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L ++  +  VR Y+ ++ A  +    E A R+ ++M  +G  P   T T L+  Y K G 
Sbjct: 169 LEDQGTKPEVRTYNTILSACNRSGQPEHALRVYERMLADGAQPTATTYTALISAYGKTGK 228

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           ++ A   F+ +   G + +   Y+S+I A   AG+ +L + L+D M     + +   + A
Sbjct: 229 IEEALRIFQDMVRRGCERNVITYSSLISACEKAGRWQLALELLDEMHRDNCKPNTVTFNA 288

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           LL + AQ G  + A  +   M     +P   S  +L+ A+ +     +A    D M   G
Sbjct: 289 LLSACAQGGQWKAAQDVFEQMPSCGCKPDAVSYAILISAFDRGNQWCRALQALDEMQGQG 348

Query: 428 HKPDDRCTASMIAAYGKKNLLDKAL 452
           H+PD      +I A  +  +L   L
Sbjct: 349 HRPDVGVYNVVIEALTRSGVLSAQL 373



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 99/213 (46%), Gaps = 3/213 (1%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           L D  R L   +E   + D+ T T ++        L +A E    +R HG   +   Y++
Sbjct: 54  LFDWLRSLPDNHELAHLCDVYTYTTIISQCGSHQQLRKALELVAEMRGHGVVCNVHTYSA 113

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           ++   + A + +L + +   ++  G   +   Y  L+    + G+ + A Q+ + +  + 
Sbjct: 114 LMNVCIKANELELALDVYGQLLREGCTPNLVTYNILIDIHGKMGNWQEAVQVLDALEDQG 173

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
            +P + +   ++ A  ++G P+ A   ++ M+  G +P      ++I+AYGK   +++AL
Sbjct: 174 TKPEVRTYNTILSACNRSGQPEHALRVYERMLADGAQPTATTYTALISAYGKTGKIEEAL 233

Query: 453 NLLLELEKDGFEPGPATYTVLVDWL---GRLQL 482
            +  ++ + G E    TY+ L+      GR QL
Sbjct: 234 RIFQDMVRRGCERNVITYSSLISACEKAGRWQL 266



 Score = 44.3 bits (103), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 6/185 (3%)

Query: 403 LVEAYGQAGDPDQARSNFDYM------IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           L++   + G  ++A   FD++        L H  D     ++I+  G    L KAL L+ 
Sbjct: 38  LLKELHKVGLSNRASELFDWLRSLPDNHELAHLCDVYTYTTIISQCGSHQQLRKALELVA 97

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
           E+   G      TY+ L++   +   +  A  + G++   G  P       L D++ + G
Sbjct: 98  EMRGHGVVCNVHTYSALMNVCIKANELELALDVYGQLLREGCTPNLVTYNILIDIHGKMG 157

Query: 517 IEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKV 576
             ++A+Q L  LE +  +     +  I++     G  + A RV+  M A G   +     
Sbjct: 158 NWQEAVQVLDALEDQGTKPEVRTYNTILSACNRSGQPEHALRVYERMLADGAQPTATTYT 217

Query: 577 ALISS 581
           ALIS+
Sbjct: 218 ALISA 222



 Score = 43.5 bits (101), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 65/138 (47%)

Query: 444 KKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFK 503
           K N L+ AL++  +L ++G  P   TY +L+D  G++    EA Q+L  + + G  P  +
Sbjct: 120 KANELELALDVYGQLLREGCTPNLVTYNILIDIHGKMGNWQEAVQVLDALEDQGTKPEVR 179

Query: 504 IQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLM 563
              ++     R+G  + AL+    + A   Q     +  +I+     G +++A R+   M
Sbjct: 180 TYNTILSACNRSGQPEHALRVYERMLADGAQPTATTYTALISAYGKTGKIEEALRIFQDM 239

Query: 564 EAQGFAASERLKVALISS 581
             +G   +     +LIS+
Sbjct: 240 VRRGCERNVITYSSLISA 257


>gi|225452994|ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 588

 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 88/358 (24%), Positives = 152/358 (42%), Gaps = 2/358 (0%)

Query: 216 ELLQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           E  QP+ + +  L++ L +  NT    ++    + + + Q NV  +S LID+  K+  + 
Sbjct: 169 EGFQPNVVTYGTLINGLCKVGNTSAAIRLLR-SMEQGNCQPNVVVFSTLIDSLCKDRQVT 227

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           +A  I  +M   GI P+IVT   L+H   K             +      PD    N+++
Sbjct: 228 EAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVV 287

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
            A    G       +VDMMI  G+E +   Y AL+       +V  A ++ + M  ++  
Sbjct: 288 DALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCV 347

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
             + S   L+  Y +    D+A   F+ M R    P+     ++I        L  A++L
Sbjct: 348 ANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISL 407

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
             E+   G  P   TY  L D+L + + +++A  LL  I      P  +I  ++ D   R
Sbjct: 408 FHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCR 467

Query: 515 AGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572
           AG  + A      L +K  Q     +  +I+GL   G L +A ++   M   G + ++
Sbjct: 468 AGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPND 525



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 73/350 (20%), Positives = 136/350 (38%), Gaps = 35/350 (10%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           Q +   ++ LI     E  + +A  +  KM   G  P++VT   L++   K GN   A  
Sbjct: 137 QPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIR 196

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
              S+     QP+  V++++I +     Q     ++   MIT GI  +   Y +L+    
Sbjct: 197 LLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLC 256

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD-- 431
           +  + +    + N M   +  P + +   +V+A  + G   +A    D MI  G +P+  
Sbjct: 257 KLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVV 316

Query: 432 ---------------------------DRCTASMIA------AYGKKNLLDKALNLLLEL 458
                                        C A++I+       Y K   +DKA+ L  E+
Sbjct: 317 TYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEM 376

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
            +    P   TY  L+  L  +  + +A  L  ++   G+ P      +L D   +    
Sbjct: 377 SRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHL 436

Query: 519 KKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
            KA+  L  +E          +  I++G+   G L+DA+ +   + ++G 
Sbjct: 437 DKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGL 486



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 114/273 (41%), Gaps = 37/273 (13%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ L+D H   N ++ A ++   M     V ++++   L++ Y K  ++D+A   F
Sbjct: 314 NVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLF 373

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG------------------ 357
           E +      P+   YN++I    + G+ +  +SL   M+  G                  
Sbjct: 374 EEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKN 433

Query: 358 ------------IERSE-----EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
                       IE S      +IY  +L    + G++  A  + + +  +  QP + + 
Sbjct: 434 RHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTY 493

Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIA-AYGKKNLLDKALNLLLELE 459
            +++    + G   +A   F  M + G  P+D CT ++I   + + N   + + LL E+ 
Sbjct: 494 NIMIHGLCKQGLLAEASKLFSEMNKNGCSPND-CTYNLITRGFLRNNEALRTIELLEEML 552

Query: 460 KDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
             GF    +T T+LV  L    L    +Q+L K
Sbjct: 553 ARGFSVDVSTTTLLVGMLSDDGLDQSVKQILCK 585



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 59/288 (20%), Positives = 113/288 (39%)

Query: 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318
           D+++L+ + AK         + ++M+  GI PD+ T  ++++       +D A  A   +
Sbjct: 72  DFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSALAKI 131

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
              G QPD   + ++I      G+    + L D MI  G + +   Y  L+    + G+ 
Sbjct: 132 LKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNT 191

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             A ++   M     QP +   + L+++  +     +A + F  MI  G  P+     S+
Sbjct: 192 SAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSL 251

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           I    K         L+ E+      P   T   +VD L +  ++ EA  ++  +   G 
Sbjct: 252 IHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGV 311

Query: 499 APPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
            P      +L D +        A++    +  K        +  +ING
Sbjct: 312 EPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLING 359


>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 618

 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 79/348 (22%), Positives = 160/348 (45%), Gaps = 16/348 (4%)

Query: 220 PSRIDWINLLDRLREQN-----TQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           P+ + +  L+  L  ++     T+L+ ++ +L  +      N   Y  LI    +   + 
Sbjct: 159 PNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTP-----NAVTYGTLIKGLCQTGNVN 213

Query: 275 DAERILKKM----NENGIV--PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKK 328
            A ++ K+M    ++ G+   P ++T ++++    K G  D AKE FE +++ G  PD  
Sbjct: 214 IALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVI 273

Query: 329 VYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIM 388
            Y+++I  +  AG+      L D M+  G++     +  L+ +  + G V  A ++  +M
Sbjct: 274 SYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVM 333

Query: 389 RIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLL 448
                 P L +   L++ +   GD + AR  F  M   G +PD+    ++I  Y K   +
Sbjct: 334 IQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKV 393

Query: 449 DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSL 508
            +A+NL  E+ + G  P   TY  L+  L +   + +A++L G +   G +   +I    
Sbjct: 394 KEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIF 453

Query: 509 CDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDA 556
            D   +     +A++    L++   ++  +++  +I+GL   G L+ A
Sbjct: 454 LDGLCKNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLETA 501



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 80/360 (22%), Positives = 165/360 (45%), Gaps = 18/360 (5%)

Query: 220 PSRIDWINLLDRLREQ-NTQLYFKVAELVLSEES-FQTNVR----DYSKLIDAHAKENCL 273
           P+ + +  L+  L +  N  +  K+ + +L++ S +  N +     YS +ID   K    
Sbjct: 194 PNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGRE 253

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           ++A+ + ++M   G++PD+++ + L+H +  AG  D++K  F+ +   G QPD   ++ +
Sbjct: 254 DEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVL 313

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           I      G+      L+++MI  GI  +   Y +L+  F   GD+  A ++   M  +  
Sbjct: 314 IDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGL 373

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
           +P   S T L+  Y +     +A + ++ M+++G  P+     +++    +K  +  A  
Sbjct: 374 EPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKK 433

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQV----SLC 509
           L   ++  G       Y + +D L +   + EA +L  ++        FK+ +     L 
Sbjct: 434 LFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYN----FKLNIENYSCLI 489

Query: 510 DMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQG 567
           D   +AG  + A +   F +  +E + PD   +  +I+G    G + +A  +   ME  G
Sbjct: 490 DGLCKAGKLETAWEL--FEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENG 547



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 65/316 (20%), Positives = 130/316 (41%), Gaps = 12/316 (3%)

Query: 271 NCLEDAERI------LKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQ 324
           NCL +  R+      +  +   G +P++VT T L+        +  A   F  ++  G  
Sbjct: 134 NCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCT 193

Query: 325 PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI------YLALLRSFAQCGDV 378
           P+   Y ++I      G   + + L   M+    +           Y  ++    + G  
Sbjct: 194 PNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGRE 253

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             A ++   M+ +   P + S + L+  +  AG  DQ++  FD M+  G +PD    + +
Sbjct: 254 DEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVL 313

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           I    K+  + +A  LL  + + G  P   TY  L+D    +  +N A +L   +   G 
Sbjct: 314 IDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGL 373

Query: 499 APPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQR 558
            P      +L + Y +    K+A+     +    +      +  ++ GL   G + DA++
Sbjct: 374 EPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKK 433

Query: 559 VHGLMEAQGFAASERL 574
           + G+M+  G +A+ ++
Sbjct: 434 LFGVMKTYGVSANSQI 449



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/297 (21%), Positives = 124/297 (41%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           +QP  + +  L+D L ++      K    V+ +     N+  Y+ LID       L  A 
Sbjct: 303 VQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSAR 362

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
            +   M   G+ PD ++ T L++ Y K   +  A   +  +   G  P+   Y +++   
Sbjct: 363 ELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGL 422

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
              G+      L  +M T G+  + +IY   L    +   +  A ++ N ++   F+  +
Sbjct: 423 FQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNI 482

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
           E+ + L++   +AG  + A   F+ + + G +PD      MI  + K   +D A  L  +
Sbjct: 483 ENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEK 542

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
           +E++G  P    Y  L+        + E  +LL K+ +   +P       + DM  +
Sbjct: 543 MEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQKDVSPNAASCTIVVDMLCK 599



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 72/371 (19%), Positives = 146/371 (39%), Gaps = 81/371 (21%)

Query: 185 KPITGKCKLITDKILSLEKEEDPSPLLAEWK-ELLQPSRIDWINLLDRLR-----EQNTQ 238
           KP      +I D +  + +E++   L  E K + + P  I +  L+         +Q+  
Sbjct: 234 KPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKH 293

Query: 239 LYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVL 298
           L+    E+V  ++  Q ++  +S LID   KE  + +A+++L+ M + GIVP+++T   L
Sbjct: 294 LF---DEMV--DQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSL 348

Query: 299 VHMYSKAGNLDRAKEAFESLRSHGFQ---------------------------------- 324
           +  +   G+L+ A+E F S+ S G +                                  
Sbjct: 349 IDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGK 408

Query: 325 -PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY------------------ 365
            P+   Y +++      G+      L  +M T G+  + +IY                  
Sbjct: 409 SPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAME 468

Query: 366 -----------------LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYG 408
                              L+    + G +  A ++   +  E  QP + +  +++  + 
Sbjct: 469 LFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFC 528

Query: 409 QAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPA 468
           + G  D A   F+ M   G  PD     +++  + + N L++ + LL ++ +    P  A
Sbjct: 529 KVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQKDVSPNAA 588

Query: 469 TYTVLVDWLGR 479
           + T++VD L +
Sbjct: 589 SCTIVVDMLCK 599


>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 794

 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 143/323 (44%), Gaps = 4/323 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L  + FQ N   Y+ LI+   K      A ++L+K++     P++   + ++    K   
Sbjct: 403 LLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQL 462

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A   F  +   G   D   Y+++I  +   G+ K  + L++ M+   I      Y  
Sbjct: 463 VSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTI 522

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+ +  + G V+ A  +  +M     +P + +   L+  Y    +  +A+  F+ M  +G
Sbjct: 523 LVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMG 582

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD      +I  + K  ++D+ALNL  E+ +    P   TY+ LVD L +   I+   
Sbjct: 583 VTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCKSGRISYVW 642

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERII--N 545
            L+ ++ + G+        SL D   + G   KA+    F + K + + P+ F   I  +
Sbjct: 643 DLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIAL--FNKMKDQGIRPNTFTFTILLD 700

Query: 546 GLLAGGFLQDAQRVHGLMEAQGF 568
           GL  GG L+DAQ V   +  +G+
Sbjct: 701 GLCKGGRLKDAQEVFQDLLTKGY 723



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 120/244 (49%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           V+ +   + +V  Y+ L++ +     ++ A+ +   M+  G+ PD+ T T+L++ + K+ 
Sbjct: 542 VMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSK 601

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            +D A   F+ +      PD   Y+S++     +G+      L+D M   G       Y 
Sbjct: 602 MVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQPADVITYN 661

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           +L+    + G +  A  + N M+ +  +P   + T+L++   + G    A+  F  ++  
Sbjct: 662 SLIDGLCKNGHLDKAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTK 721

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G+  D      MI  + K+ LL++AL +L ++E++G  P   T+ ++++ L +    ++A
Sbjct: 722 GYHLDVYIYNVMIYGHCKQGLLEEALTMLSKMEENGCIPNAVTFDIIINALFKKDENDKA 781

Query: 487 EQLL 490
           E+LL
Sbjct: 782 EKLL 785



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/297 (21%), Positives = 122/297 (41%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++K++D+ AK      A  +  ++   GI PD+ T  +L++ +   G +         + 
Sbjct: 310 FNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKIL 369

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G+ P     N++I      GQ K  +   D ++  G + ++  Y  L+    + GD R
Sbjct: 370 KRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTR 429

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
           GA ++   +     +P +E  + +++A  +     +A   F  M   G   D    +++I
Sbjct: 430 GAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLI 489

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             +     L +A+ LL E+      P   TYT+LVD LG+   + EA+ +L  + +    
Sbjct: 490 YGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVK 549

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDA 556
           P      +L + Y      KKA      +           +  +ING      + +A
Sbjct: 550 PDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEA 606



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/312 (21%), Positives = 135/312 (43%), Gaps = 5/312 (1%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           V+  ++   NV  Y+ L+DA  KE  +++A+ +L  M +  +  +++T + L+  Y    
Sbjct: 193 VMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVMLKACVKSNVITYSTLMDGYFLVY 252

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI-- 364
            + +A+  F ++   G  PD   YN MI  +    +    ++L   MI S   R   I  
Sbjct: 253 EVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEMILS---RFPPIIQ 309

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
           +  +L SFA+      A  +++ + ++  QP L +  +L+  +   G      S    ++
Sbjct: 310 FNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKIL 369

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
           + G+ P      ++I     K  + KAL+   +L   GF+    +Y  L++ + ++    
Sbjct: 370 KRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTR 429

Query: 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERII 544
            A +LL KI      P  ++  ++ D   +  +  +A      +  K        +  +I
Sbjct: 430 GAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLI 489

Query: 545 NGLLAGGFLQDA 556
            G    G L++A
Sbjct: 490 YGFCIVGKLKEA 501



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 88/406 (21%), Positives = 155/406 (38%), Gaps = 52/406 (12%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           + P+   +  L+D L ++      K    V+ +   ++NV  YS L+D +     ++ A+
Sbjct: 199 INPNVCTYNILVDALCKEGKVKEAKSVLAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQ 258

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL------------------- 318
            +   M+  G+ PD+ +  ++++ + K   +D+A   F+ +                   
Sbjct: 259 HVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEMILSRFPPIIQFNKILDSFA 318

Query: 319 ----------RSH-----GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363
                      SH     G QPD    N +I  + + GQ   G S++  ++  G   S  
Sbjct: 319 KMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTV 378

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
               L++     G V+ A    + +  + FQ    S   L+    + GD   A       
Sbjct: 379 TLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGA------- 431

Query: 424 IRLGHKPDDRCT-------ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476
           I+L  K D R T       +++I A  K  L+ +A  L  E+   G      TY+ L+  
Sbjct: 432 IKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYG 491

Query: 477 LGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG 536
              +  + EA  LL ++      P  +    L D   + G  K+A   L  +   K  + 
Sbjct: 492 FCIVGKLKEAIGLLNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVML--KACVK 549

Query: 537 PDDF--ERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
           PD F    ++NG L    ++ AQ V   M   G          LI+
Sbjct: 550 PDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILIN 595



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/333 (20%), Positives = 134/333 (40%), Gaps = 1/333 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L  + FQ N   Y+ LI+   +      A + L+K++     P++     ++    K   
Sbjct: 89  LLAQGFQLNQVSYATLINGVCRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQL 148

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A   F  +   G   +   Y+++I  +   G+ K  + L+++M+   I  +   Y  
Sbjct: 149 VSEAYGLFSEMTVKGISANVVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNI 208

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+ +  + G V+ A  +  +M     +  + + + L++ Y    +  +A+  F+ M  +G
Sbjct: 209 LVDALCKEGKVKEAKSVLAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMG 268

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD      MI  + K   +DKALNL  E+    F P    +  ++D   +++  + A 
Sbjct: 269 VTPDVHSYNIMINGFCKIKRVDKALNLFKEMILSRFPP-IIQFNKILDSFAKMKHYSTAV 327

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
            L  ++   G  P       L + +   G        L  +  +           +I GL
Sbjct: 328 SLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGL 387

Query: 548 LAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
              G ++ A   H  + AQGF  ++     LI+
Sbjct: 388 CLKGQVKKALHFHDKLLAQGFQLNQVSYATLIN 420


>gi|255584314|ref|XP_002532893.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527353|gb|EEF29498.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 625

 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 119/279 (42%), Gaps = 38/279 (13%)

Query: 230 DRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIV 289
           DRL +   ++Y K+A +       + N+  Y+ LI A  K   +E A+ +L +M    + 
Sbjct: 178 DRLTDMVWKVYKKMARI-----GVEANIHVYNVLIHACCKSGDVEKADNLLSEMESKCVF 232

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGM-- 347
           PD+ T   L+ +Y K G    A    + +   G +PD   YNS+I  +   G+ +  M  
Sbjct: 233 PDLFTYNTLISLYCKKGMHYEALSVQDRMEREGIKPDIVTYNSLIHGFCKEGRMREAMRL 292

Query: 348 ---------------SLVD----------------MMITSGIERSEEIYLALLRSFAQCG 376
                          +L+D                 M   G+  +   Y ++LR   + G
Sbjct: 293 FKEIRDATPNHVTYTTLIDGYCRLNDLDQALRLREEMEAQGLYPTVVTYNSILRKLCEIG 352

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
            +R A ++ N M  ++ +P   +C  L+ AY + GD   A    + M+  G K D     
Sbjct: 353 RIRDANKLLNEMSEKKIEPDNVTCNTLINAYCKIGDMKSALKVKNRMVEAGLKLDQFTYK 412

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
           ++I  + K   +D A  LLL +   GF P   TY+ LVD
Sbjct: 413 ALIHGFCKIREMDGAKELLLSMLDAGFSPSYCTYSWLVD 451



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 60/258 (23%), Positives = 113/258 (43%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N   Y+ LID + + N L+ A R+ ++M   G+ P +VT   ++    + G +  A +  
Sbjct: 302 NHVTYTTLIDGYCRLNDLDQALRLREEMEAQGLYPTVVTYNSILRKLCEIGRIRDANKLL 361

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +     +PD    N++I AY   G  K  + + + M+ +G++  +  Y AL+  F + 
Sbjct: 362 NEMSEKKIEPDNVTCNTLINAYCKIGDMKSALKVKNRMVEAGLKLDQFTYKALIHGFCKI 421

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
            ++ GA ++   M    F P+  + + LV+ Y    + +      D  +R G   D    
Sbjct: 422 REMDGAKELLLSMLDAGFSPSYCTYSWLVDGYCNQQNEEAVLKLPDEFVRKGLCVDKSLY 481

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I  + K+  +D A  +   +++ G       YT L     +L   N A  LL ++ +
Sbjct: 482 RALIRRFCKREQVDYAKKIFSLMQEKGTLGDSVIYTSLAYAYWKLGKANAASDLLDEMYK 541

Query: 496 LGEAPPFKIQVSLCDMYA 513
                  KI  +L   YA
Sbjct: 542 RRLMITLKIYRALNASYA 559



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 72/319 (22%), Positives = 132/319 (41%), Gaps = 37/319 (11%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F+ ++   + L+++ AK+   +   ++ KKM   G+  +I    VL+H   K+G++++A 
Sbjct: 161 FRPHLHACTVLLNSLAKDRLTDMVWKVYKKMARIGVEANIHVYNVLIHACCKSGDVEKAD 220

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
                + S    PD   YN++I  Y   G     +S+ D M   GI+     Y +L+  F
Sbjct: 221 NLLSEMESKCVFPDLFTYNTLISLYCKKGMHYEALSVQDRMEREGIKPDIVTYNSLIHGF 280

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + G +R A ++     I +  P   + T L++ Y +  D                    
Sbjct: 281 CKEGRMREAMRL--FKEIRDATPNHVTYTTLIDGYCRLND-------------------- 318

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
                          LD+AL L  E+E  G  P   TY  ++  L  +  I +A +LL +
Sbjct: 319 ---------------LDQALRLREEMEAQGLYPTVVTYNSILRKLCEIGRIRDANKLLNE 363

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
           +SE    P      +L + Y + G  K AL+    +     ++    ++ +I+G      
Sbjct: 364 MSEKKIEPDNVTCNTLINAYCKIGDMKSALKVKNRMVEAGLKLDQFTYKALIHGFCKIRE 423

Query: 553 LQDAQRVHGLMEAQGFAAS 571
           +  A+ +   M   GF+ S
Sbjct: 424 MDGAKELLLSMLDAGFSPS 442



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 125/294 (42%), Gaps = 8/294 (2%)

Query: 290 PDIVTSTV--LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGM 347
           PDI +     LV +Y+       A + FE +  +GF+P       ++ +        +  
Sbjct: 126 PDINSHVFSWLVIVYANTKMKQEAIQVFEHMMVNGFRPHLHACTVLLNSLAKDRLTDMVW 185

Query: 348 SLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAY 407
            +   M   G+E +  +Y  L+ +  + GDV  A  + + M  +   P L +   L+  Y
Sbjct: 186 KVYKKMARIGVEANIHVYNVLIHACCKSGDVEKADNLLSEMESKCVFPDLFTYNTLISLY 245

Query: 408 GQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGP 467
            + G   +A S  D M R G KPD     S+I  + K+  + +A+ L  E+ +D   P  
Sbjct: 246 CKKGMHYEALSVQDRMEREGIKPDIVTYNSLIHGFCKEGRMREAMRLFKEI-RDA-TPNH 303

Query: 468 ATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGF 527
            TYT L+D   RL  +++A +L  ++   G  P      S+       G  + A + L  
Sbjct: 304 VTYTTLIDGYCRLNDLDQALRLREEMEAQGLYPTVVTYNSILRKLCEIGRIRDANKLLN- 362

Query: 528 LEAKKEQMGPDDF--ERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
            E  ++++ PD+     +IN     G ++ A +V   M   G    +    ALI
Sbjct: 363 -EMSEKKIEPDNVTCNTLINAYCKIGDMKSALKVKNRMVEAGLKLDQFTYKALI 415



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 111/258 (43%), Gaps = 12/258 (4%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +SE+  + +    + LI+A+ K   ++ A ++  +M E G+  D  T   L+H + K   
Sbjct: 364 MSEKKIEPDNVTCNTLINAYCKIGDMKSALKVKNRMVEAGLKLDQFTYKALIHGFCKIRE 423

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D AKE   S+   GF P    Y+ ++  Y N    +  + L D  +  G+   + +Y A
Sbjct: 424 MDGAKELLLSMLDAGFSPSYCTYSWLVDGYCNQQNEEAVLKLPDEFVRKGLCVDKSLYRA 483

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+R F +   V  A +I ++M+ +         T L  AY + G  + A    D M +  
Sbjct: 484 LIRRFCKREQVDYAKKIFSLMQEKGTLGDSVIYTSLAYAYWKLGKANAASDLLDEMYKRR 543

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVL----VDWLG-RLQL 482
                +   ++ A+Y          N +L L  +     P + + L    VDW   R+  
Sbjct: 544 LMITLKIYRALNASYAGD-------NSILSLFWNHVVAAPYSSSQLVMAYVDWTNKRITS 596

Query: 483 INEAEQLLGKISELGEAP 500
           ++     L  +S + E+P
Sbjct: 597 VHVEGPFLEPVSFINESP 614



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 58/275 (21%), Positives = 112/275 (40%), Gaps = 20/275 (7%)

Query: 294 TSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMM 353
           +S  ++H+ +K  +L  A+   E +    F   + V ++++  +     P +        
Sbjct: 80  SSWTMIHILTKFKHLKTAQSLLEKIAYRDFLSTQSVLSALVRLH---DDPDI-------- 128

Query: 354 ITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDP 413
                  +  ++  L+  +A     + A Q+   M +  F+P L +CT+L+ +  +    
Sbjct: 129 -------NSHVFSWLVIVYANTKMKQEAIQVFEHMMVNGFRPHLHACTVLLNSLAKDRLT 181

Query: 414 DQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVL 473
           D     +  M R+G + +      +I A  K   ++KA NLL E+E     P   TY  L
Sbjct: 182 DMVWKVYKKMARIGVEANIHVYNVLIHACCKSGDVEKADNLLSEMESKCVFPDLFTYNTL 241

Query: 474 VDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE 533
           +    +  +  EA  +  ++   G  P      SL   + + G  ++A++   F E +  
Sbjct: 242 ISLYCKKGMHYEALSVQDRMEREGIKPDIVTYNSLIHGFCKEGRMREAMRL--FKEIRDA 299

Query: 534 QMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
                 +  +I+G      L  A R+   MEAQG 
Sbjct: 300 TPNHVTYTTLIDGYCRLNDLDQALRLREEMEAQGL 334


>gi|422294671|gb|EKU21971.1| hypothetical protein NGA_2006000, partial [Nannochloropsis gaditana
           CCMP526]
          Length = 472

 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 115/245 (46%), Gaps = 10/245 (4%)

Query: 248 LSEESFQTNVRDYSKLIDAHA-KENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           + E     +V  YS+L+  +A KE  +  AE +L++M  +G+ P+  T   L+  Y KAG
Sbjct: 84  MQEHGVLADVVTYSQLLQGYATKEGDMGKAEEVLERMARDGVAPNSYTYNYLIEGYVKAG 143

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            +D A++  E +R+ G  P    Y  ++ AY      +    ++D M   G++ + +++ 
Sbjct: 144 EMDWAEDVLERMRTVGLAPTSMNYCVLMDAYTRRRDARGAEKILDRMKKEGVQANVQVFT 203

Query: 367 ALLRSFAQCGDVRGA-GQITNIMRIEE--------FQPTLESCTLLVEAYGQAGDPDQAR 417
            L+ ++A+ GDV GA G +  ++ + E         +P + + + L+  Y +AG    A 
Sbjct: 204 TLMNAYAKRGDVEGAEGVLARMLAVAEEEGGGSKDCEPNVHTYSTLMNVYARAGLAAGAE 263

Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
                M   G  P+     +++ AY +    + A  +L  +E  G  P   TY  L+   
Sbjct: 264 GVLTRMTAAGWAPNVITFTTLMTAYSRAGDPEGAELVLKRMEAAGVSPNVLTYNTLLSAT 323

Query: 478 GRLQL 482
            R+ L
Sbjct: 324 SRMGL 328



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/311 (21%), Positives = 128/311 (41%), Gaps = 45/311 (14%)

Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMY--------- 302
           + + N   Y+ L+ A+     +  A+++LK+M + G+ PD  T   L+  +         
Sbjct: 18  NLKPNAITYNSLLTAYTNAGDMAGAQQVLKRMVQAGLSPDTYTFNTLIAAFVARREVRAA 77

Query: 303 ---------------------------SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
                                      +K G++ +A+E  E +   G  P+   YN +I 
Sbjct: 78  EKMVAYMQEHGVLADVVTYSQLLQGYATKEGDMGKAEEVLERMARDGVAPNSYTYNYLIE 137

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
            YV AG+      +++ M T G+  +   Y  L+ ++ +  D RGA +I + M+ E  Q 
Sbjct: 138 GYVKAGEMDWAEDVLERMRTVGLAPTSMNYCVLMDAYTRRRDARGAEKILDRMKKEGVQA 197

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH---------KPDDRCTASMIAAYGKKN 446
            ++  T L+ AY + GD + A      M+ +           +P+    ++++  Y +  
Sbjct: 198 NVQVFTTLMNAYAKRGDVEGAEGVLARMLAVAEEEGGGSKDCEPNVHTYSTLMNVYARAG 257

Query: 447 LLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQV 506
           L   A  +L  +   G+ P   T+T L+    R      AE +L ++   G +P      
Sbjct: 258 LAAGAEGVLTRMTAAGWAPNVITFTTLMTAYSRAGDPEGAELVLKRMEAAGVSPNVLTYN 317

Query: 507 SLCDMYARAGI 517
           +L    +R G+
Sbjct: 318 TLLSATSRMGL 328



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 112/257 (43%), Gaps = 10/257 (3%)

Query: 323 FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAG 382
            +P+   YNS++ AY NAG       ++  M+ +G+      +  L+ +F    +VR A 
Sbjct: 19  LKPNAITYNSLLTAYTNAGDMAGAQQVLKRMVQAGLSPDTYTFNTLIAAFVARREVRAAE 78

Query: 383 QITNIMRIEEFQPTLESCTLLVEAYG-QAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441
           ++   M+       + + + L++ Y  + GD  +A    + M R G  P+      +I  
Sbjct: 79  KMVAYMQEHGVLADVVTYSQLLQGYATKEGDMGKAEEVLERMARDGVAPNSYTYNYLIEG 138

Query: 442 YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
           Y K   +D A ++L  +   G  P    Y VL+D   R +    AE++L ++ + G    
Sbjct: 139 YVKAGEMDWAEDVLERMRTVGLAPTSMNYCVLMDAYTRRRDARGAEKILDRMKKEGVQAN 198

Query: 502 FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG-------PD--DFERIINGLLAGGF 552
            ++  +L + YA+ G  + A   L  + A  E+ G       P+   +  ++N     G 
Sbjct: 199 VQVFTTLMNAYAKRGDVEGAEGVLARMLAVAEEEGGGSKDCEPNVHTYSTLMNVYARAGL 258

Query: 553 LQDAQRVHGLMEAQGFA 569
              A+ V   M A G+A
Sbjct: 259 AAGAEGVLTRMTAAGWA 275



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 88/169 (52%), Gaps = 11/169 (6%)

Query: 218 LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L P+ +++  L+D   R ++ +   K+ +  + +E  Q NV+ ++ L++A+AK   +E A
Sbjct: 160 LAPTSMNYCVLMDAYTRRRDARGAEKILDR-MKKEGVQANVQVFTTLMNAYAKRGDVEGA 218

Query: 277 ERILKKM-----NENG----IVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK 327
           E +L +M      E G      P++ T + L+++Y++AG    A+     + + G+ P+ 
Sbjct: 219 EGVLARMLAVAEEEGGGSKDCEPNVHTYSTLMNVYARAGLAAGAEGVLTRMTAAGWAPNV 278

Query: 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
             + +++ AY  AG P+    ++  M  +G+  +   Y  LL + ++ G
Sbjct: 279 ITFTTLMTAYSRAGDPEGAELVLKRMEAAGVSPNVLTYNTLLSATSRMG 327


>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
 gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
          Length = 543

 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 72/309 (23%), Positives = 138/309 (44%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++ L+    K N L +A +++++M+E GIVPD+VT   L+    K+  ++ A++  E++ 
Sbjct: 176 FNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMV 235

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
               +P+   YN++I  Y   G   L   L++ MI SG       + +L+  F Q   + 
Sbjct: 236 KRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKID 295

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++ ++M+     P L +  +L+     AG  ++A      M   G  PD     S+I
Sbjct: 296 KACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRGILPDIITYNSLI 355

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             + +   +++A  +   + + G  P   +Y  L   L + +  +EA  LL  + + G  
Sbjct: 356 GIFCRNFQIEQAFQIQNLMVERGVIPDGISYCTLAVALLKSERFDEAFALLDNMFDAGAI 415

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P      SL +    +    +A   L  +           +E ++ GL   G + DA+ V
Sbjct: 416 PNLFTFNSLMEGLCCSRRLDEARHLLAVMRRVGCDPAASTYEVLVTGLCKAGRVDDAKEV 475

Query: 560 HGLMEAQGF 568
             +M ++G 
Sbjct: 476 LVMMVSEGI 484



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 121/270 (44%), Gaps = 4/270 (1%)

Query: 255 TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA 314
           TN   Y+ LI    K   +E A ++L +M E G  PD+VT + +V      GNL RA + 
Sbjct: 103 TNHITYNTLIGGFCKAGDMERAFQLLAEMKERGHSPDVVTHSSIVQALCNTGNLSRAMQY 162

Query: 315 F-ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
           F ES+      PD  ++N ++     A Q      +++ M   GI      Y +L+    
Sbjct: 163 FRESVEC---APDSVLFNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLC 219

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           +   +  A Q+   M   + +P L +   L+  Y + G    A    + MI+ G  PD  
Sbjct: 220 KSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVV 279

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
              S+I+ + +K+ +DKA  +L  ++K    P   TY VL+  L      NEA +LL ++
Sbjct: 280 TFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEM 339

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
              G  P      SL  ++ R    ++A Q
Sbjct: 340 DGRGILPDIITYNSLIGIFCRNFQIEQAFQ 369



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 132/290 (45%), Gaps = 2/290 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  Y+ LI  + K  C   A +++++M ++G  PD+VT   L+  + +   +D+A E  
Sbjct: 242 NLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVL 301

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             ++     P+   YN +I    +AG+      L+  M   GI      Y +L+  F + 
Sbjct: 302 HLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRGILPDIITYNSLIGIFCRN 361

Query: 376 GDVRGAGQITNIMRIEEFQPT-LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
             +  A QI N+M      P  +  CTL V A  ++   D+A +  D M   G  P+   
Sbjct: 362 FQIEQAFQIQNLMVERGVIPDGISYCTLAV-ALLKSERFDEAFALLDNMFDAGAIPNLFT 420

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
             S++        LD+A +LL  + + G +P  +TY VLV  L +   +++A+++L  + 
Sbjct: 421 FNSLMEGLCCSRRLDEARHLLAVMRRVGCDPAASTYEVLVTGLCKAGRVDDAKEVLVMMV 480

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERII 544
             G  P      ++    AR G +  AL     + A + +     +++++
Sbjct: 481 SEGIQPLVSSSGTIVHTLAREGKQDLALHYFDQVVAAESKACDPSYQKLL 530



 Score = 45.8 bits (107), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 49/220 (22%), Positives = 87/220 (39%), Gaps = 3/220 (1%)

Query: 351 DMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410
           D ++    + +   Y  L+  F + GD+  A Q+   M+     P + + + +V+A    
Sbjct: 94  DELLGQHCDTNHITYNTLIGGFCKAGDMERAFQLLAEMKERGHSPDVVTHSSIVQALCNT 153

Query: 411 GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATY 470
           G+  +A   F   +     PD      ++    K N L +A  ++ E+ + G  P   TY
Sbjct: 154 GNLSRAMQYFRESVECA--PDSVLFNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTY 211

Query: 471 TVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEA 530
             L+D L +   + EA QLL  + +    P      +L   Y + G    A Q +  +  
Sbjct: 212 NSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQ 271

Query: 531 KKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAA 570
                    F  +I+G      +  A  V  LM+ +G  A
Sbjct: 272 SGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMK-KGLCA 310


>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
 gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
          Length = 719

 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 145/313 (46%), Gaps = 19/313 (6%)

Query: 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318
            +S LID  AK   ++ A  +  +M E     ++V+ T +V  +S+ G+ ++A   F  +
Sbjct: 283 SWSTLIDGFAKNGDMDRAMELFDQMPEK----NVVSWTTMVDGFSRNGDSEKALSMFSKM 338

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
              G +P+     S + A    G  + G+ +   +  +G+  +E +  AL+  +A+CG++
Sbjct: 339 LEEGVRPNAFTIVSALSACAKIGGLEAGLRIHKYIKDNGLHLTEALGTALVDMYAKCGNI 398

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             A ++      E  Q ++ + T+++  +   G  +QA + F  M+  G KPD+    ++
Sbjct: 399 ESASEVFG----ETEQKSIRTWTVMIWGWAIHGHSEQAIACFKQMMFAGIKPDEVVFLAL 454

Query: 439 IAAYGKKNLLDKALNLLLELEKD-GFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           + A      +D  LN    +  D   EP    YT++VD LGR   + EA +    I  + 
Sbjct: 455 LTACMHSGQVDIGLNFFDSMRLDYCIEPSMKHYTLIVDMLGRSGQLKEALRF---IERMP 511

Query: 498 EAPPFKIQVSL---CDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQ 554
             P F I  +L   C  + +  + K AL  L     K E     ++  + N   A G  +
Sbjct: 512 MNPDFVIWGALFCACRAHKKTKMAKFALNKL----LKLEPTHTGNYIFLSNAYAALGQWE 567

Query: 555 DAQRVHGLMEAQG 567
           DA+RV  LM+ +G
Sbjct: 568 DAERVRVLMQNRG 580



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 111/242 (45%), Gaps = 13/242 (5%)

Query: 223 IDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILK 281
           + W  ++D   R  +++    +   +L EE  + N       + A AK   LE   RI K
Sbjct: 313 VSWTTMVDGFSRNGDSEKALSMFSKML-EEGVRPNAFTIVSALSACAKIGGLEAGLRIHK 371

Query: 282 KMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAG 341
            + +NG+       T LV MY+K GN++ A E F        Q   + +  MI  +   G
Sbjct: 372 YIKDNGLHLTEALGTALVDMYAKCGNIESASEVFGETE----QKSIRTWTVMIWGWAIHG 427

Query: 342 QPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE-FQPTLESC 400
             +  ++    M+ +GI+  E ++LALL +    G V       + MR++   +P+++  
Sbjct: 428 HSEQAIACFKQMMFAGIKPDEVVFLALLTACMHSGQVDIGLNFFDSMRLDYCIEPSMKHY 487

Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIA---AYGKKNLLDKALNLLLE 457
           TL+V+  G++G   Q +    ++ R+   PD     ++     A+ K  +   ALN LL+
Sbjct: 488 TLIVDMLGRSG---QLKEALRFIERMPMNPDFVIWGALFCACRAHKKTKMAKFALNKLLK 544

Query: 458 LE 459
           LE
Sbjct: 545 LE 546



 Score = 43.5 bits (101), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 60/331 (18%), Positives = 130/331 (39%), Gaps = 44/331 (13%)

Query: 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV 350
           ++ T   L+   +   +   A   F  +   G +PD+  Y  ++ +       +LGM++ 
Sbjct: 143 NLFTFNALIRGLTTNSHFFNAIFHFRLMLRSGIKPDRLTYPFVLKSMAGLFSTELGMAIH 202

Query: 351 DMMITSGIERSEEIYLALLRSFAQCGD---------------------------VRG--- 380
            M++  GIE    + ++L+  + +                              ++G   
Sbjct: 203 CMILRCGIELDSFVRVSLVDMYVKVEKLGSAFKVFDESPERFDSGSSALLWNVLIKGCCK 262

Query: 381 AGQITNIMRIEEFQPTLE--SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA-- 436
           AG +   +++ +  P  E  S + L++ + + GD D+A   FD M      P+    +  
Sbjct: 263 AGSMKKAVKLFKAMPKKENVSWSTLIDGFAKNGDMDRAMELFDQM------PEKNVVSWT 316

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
           +M+  + +    +KAL++  ++ ++G  P   T    +    ++  +    ++   I + 
Sbjct: 317 TMVDGFSRNGDSEKALSMFSKMLEEGVRPNAFTIVSALSACAKIGGLEAGLRIHKYIKDN 376

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDA 556
           G      +  +L DMYA+ G  + A +  G    + EQ     +  +I G    G  + A
Sbjct: 377 GLHLTEALGTALVDMYAKCGNIESASEVFG----ETEQKSIRTWTVMIWGWAIHGHSEQA 432

Query: 557 QRVHGLMEAQGFAASERLKVALISSQTFNRQ 587
                 M   G    E + +AL+++   + Q
Sbjct: 433 IACFKQMMFAGIKPDEVVFLALLTACMHSGQ 463


>gi|410109937|gb|AFV61048.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           pusilla]
          Length = 431

 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 120/261 (45%), Gaps = 6/261 (2%)

Query: 218 LQPSRIDWINLLD---RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           L+PS + +  L++   RL + +     K A L       Q +   YS LI+   KE+ ++
Sbjct: 173 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLA---SGVQPDXYTYSVLINGLCKESKMD 229

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           DA  +  +M   G+VP+ VT T L+  + K G +D A E ++ + S    PD   YN++I
Sbjct: 230 DANELFDEMLVKGLVPNGVTFTTLIDGHCKKGRVDLAMEIYKRMLSQSLLPDLITYNTLI 289

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
                 G  K    L+D M+  G++  +  Y  L+    + GD+  A +    M  E  +
Sbjct: 290 YGLCKKGDLKQANDLIDEMVMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIR 349

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
               + T L+    Q G    A      M+ +G KPD      +I  + KK  + K   L
Sbjct: 350 LDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSRL 409

Query: 455 LLELEKDGFEPGPATYTVLVD 475
           L E++++G  P   TY VL++
Sbjct: 410 LKEMQRNGHVPSVVTYNVLMN 430



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/313 (20%), Positives = 145/313 (46%), Gaps = 5/313 (1%)

Query: 191 CKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELV--- 247
           C+ + + ++ L+  +       E  E   P+ + + N+L     ++  +  +VA+ V   
Sbjct: 110 CRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDI--RVAQSVFDA 167

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +++   + +V  Y+ L++ + +   L++  R+   M  +G+ PD  T +VL++   K   
Sbjct: 168 ITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDXYTYSVLINGLCKESK 227

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D A E F+ +   G  P+   + ++I  +   G+  L M +   M++  +      Y  
Sbjct: 228 MDDANELFDEMLVKGLVPNGVTFTTLIDGHCKKGRVDLAMEIYKRMLSQSLLPDLITYNT 287

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    + GD++ A  + + M ++  +P   + T L++   + GD D A  +   MI+  
Sbjct: 288 LIYGLCKKGDLKQANDLIDEMVMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQEN 347

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            + DD    ++I+   ++     A  +L E+   G +P   TYT++++   +   + +  
Sbjct: 348 IRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGS 407

Query: 488 QLLGKISELGEAP 500
           +LL ++   G  P
Sbjct: 408 RLLKEMQRNGHVP 420



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/267 (20%), Positives = 111/267 (41%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E  +  ++  ++ L+    K+  +  A+ +   + + G+ P +V+   L++ Y + G+LD
Sbjct: 135 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 194

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
                  ++ + G QPD   Y+ +I       +      L D M+  G+  +   +  L+
Sbjct: 195 EGFRLKSAMLASGVQPDXYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLI 254

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               + G V  A +I   M  +   P L +   L+    + GD  QA    D M+  G K
Sbjct: 255 DGHCKKGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMVMKGLK 314

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     ++I    K+  LD A      + ++        YT L+  L +     +AE++
Sbjct: 315 PDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKM 374

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAG 516
           L ++  +G  P       + + + + G
Sbjct: 375 LREMLSVGLKPDTGTYTMIINEFCKKG 401


>gi|357498969|ref|XP_003619773.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494788|gb|AES75991.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 452

 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 147/330 (44%), Gaps = 4/330 (1%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           + FQ N   Y  LID   K      A ++L+ ++   + P++V  + +++   K   +  
Sbjct: 78  KGFQLNQVSYGTLIDGLCKAGETRAAMQVLRNIDGLLVQPNVVMYSTIIYSLCKDKLVID 137

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A + +  +      PD   YN+++   +  G+ K  + L + M+   I+     +  L+ 
Sbjct: 138 AFDLYSQMLLKRISPDVITYNTLMYGCLIVGRLKEAVGLFNQMLLKNIKPDIYTFNILVD 197

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
              + G+++ A  +  +M  +   P + +   L++ Y      ++A   F+ M R G  P
Sbjct: 198 GLCKEGEMKKARNVLAVMIKQSVDPDVITYNSLMDGYFLVKQENKATFVFNTMARRGVTP 257

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           D    + MI    K  ++D+A+NLL E+      P   TY+ L+D L +   I +A  L+
Sbjct: 258 DVHSYSVMINGLCKTKMVDEAVNLLKEMHSKSMAPNTVTYSSLIDGLHKSGRIFDAWDLV 317

Query: 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLL 548
            ++   G+        SL D   +     KA+  L   + K + + PD   +  +++GL 
Sbjct: 318 NEMHNRGQPADVITYNSLLDALCKNHQVDKAITLLT--KIKDQGIQPDIYTYTILVDGLC 375

Query: 549 AGGFLQDAQRVHGLMEAQGFAASERLKVAL 578
             G L+DAQ V+ ++  +G+        AL
Sbjct: 376 KNGRLKDAQEVYQILLIKGYHLDSLFDKAL 405



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 108/244 (44%), Gaps = 14/244 (5%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           V+ ++S   +V  Y+ L+D +        A  +   M   G+ PD+ + +V+++   K  
Sbjct: 214 VMIKQSVDPDVITYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVHSYSVMINGLCKTK 273

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            +D A    + + S    P+   Y+S+I     +G+      LV+ M   G       Y 
Sbjct: 274 MVDEAVNLLKEMHSKSMAPNTVTYSSLIDGLHKSGRIFDAWDLVNEMHNRGQPADVITYN 333

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           +LL +  +   V  A  +   ++ +  QP + + T+LV+   + G    A+  +  +   
Sbjct: 334 SLLDALCKNHQVDKAITLLTKIKDQGIQPDIYTYTILVDGLCKNGRLKDAQEVYQIL--- 390

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
                      +I  Y   +L DKAL+LL ++E +G  P P T+ +L+  L    + ++A
Sbjct: 391 -----------LIKGYHLDSLFDKALSLLSKMEDNGCTPNPVTFEILIRALFENDMNDKA 439

Query: 487 EQLL 490
            +LL
Sbjct: 440 VELL 443



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 68/339 (20%), Positives = 139/339 (41%), Gaps = 10/339 (2%)

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           + ++ K+  +  K N       +  +M   GI  D+V   +LV+ +   G +    +  E
Sbjct: 8   IFEFGKIFASLVKINHFHTVISLSHQMELRGIQTDLVNLNILVNCFCHLGQVCLNDKVKE 67

Query: 317 SLRSH------GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           +L  H      GFQ ++  Y ++I     AG+ +  M ++  +    ++ +  +Y  ++ 
Sbjct: 68  TLHFHDDVIAKGFQLNQVSYGTLIDGLCKAGETRAAMQVLRNIDGLLVQPNVVMYSTIIY 127

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
           S  +   V  A  + + M ++   P + +   L+      G   +A   F+ M+    KP
Sbjct: 128 SLCKDKLVIDAFDLYSQMLLKRISPDVITYNTLMYGCLIVGRLKEAVGLFNQMLLKNIKP 187

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           D      ++    K+  + KA N+L  + K   +P   TY  L+D    ++  N+A  + 
Sbjct: 188 DIYTFNILVDGLCKEGEMKKARNVLAVMIKQSVDPDVITYNSLMDGYFLVKQENKATFVF 247

Query: 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLL 548
             ++  G  P       + +   +  +  +A+  L   E   + M P+   +  +I+GL 
Sbjct: 248 NTMARRGVTPDVHSYSVMINGLCKTKMVDEAVNLLK--EMHSKSMAPNTVTYSSLIDGLH 305

Query: 549 AGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQ 587
             G + DA  +   M  +G  A      +L+ +   N Q
Sbjct: 306 KSGRIFDAWDLVNEMHNRGQPADVITYNSLLDALCKNHQ 344


>gi|326510087|dbj|BAJ87260.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326520816|dbj|BAJ92771.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1092

 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 140/330 (42%), Gaps = 39/330 (11%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+  I    +   LE+A RIL+KM E G  PD+VT+TVL+ +   AG L  AK+ F
Sbjct: 240 NVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDAGRLADAKDVF 299

Query: 316 ESLRSHGFQPDKKVY----------------------------NSMIMAYVNA------- 340
             +++   +PD+  Y                            N  +++Y  A       
Sbjct: 300 WKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYTAAVDALCQV 359

Query: 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
           G+    + + D M   GI   +  Y +L+  F +      A ++ N M I    P   + 
Sbjct: 360 GRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALELFNHMNIHGPTPNGYTH 419

Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
            L +  +G++G+  +A   ++ M   G  PD     +++    K   L  A  +  EL+ 
Sbjct: 420 VLFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKA 479

Query: 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKK 520
            G  P   TYT+++    +    +EA ++  ++ E   AP      SL DM  +AG   +
Sbjct: 480 MGISPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLIDMLYKAGRGNE 539

Query: 521 ALQALGFLEAKKEQMGPDDFERIINGLLAG 550
           A +   F E K+  + P D     N LLAG
Sbjct: 540 AWKI--FYELKEMNLEPTDC--TYNTLLAG 565



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 118/267 (44%)

Query: 260  YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
            Y  ++DA  K   +ED  +I ++M+  G     VT   ++    K+  LD A   +  L 
Sbjct: 804  YHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLM 863

Query: 320  SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
            S GF P    Y  ++   +  G  +   +L D M+  G E +  IY  LL  +   GD  
Sbjct: 864  SEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTE 923

Query: 380  GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
               ++   M  +   P ++S T++++     G  +   S F  +  +G +PD      +I
Sbjct: 924  KVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLI 983

Query: 440  AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
               GK   L++AL+L  ++EK G  P   TY  L+ +LG+     EA ++  ++   G  
Sbjct: 984  HGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWK 1043

Query: 500  PPFKIQVSLCDMYARAGIEKKALQALG 526
            P      +L   Y+ +G  + A  A G
Sbjct: 1044 PNVFTYNALIRGYSVSGSPENAFAAYG 1070



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 135/309 (43%), Gaps = 4/309 (1%)

Query: 219 QPSRIDWINLLDRLREQNTQLYFKVAEL--VLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           +P R+ +I LLD+  +        V+E+   L  + +  NV  Y+  +DA  +   +++A
Sbjct: 308 KPDRVTYITLLDKCGDSGDSR--SVSEIWNALKADGYNDNVVSYTAAVDALCQVGRVDEA 365

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
             +  +M + GI+P   +   L+  + KA   +RA E F  +  HG  P+   +   I  
Sbjct: 366 LDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALELFNHMNIHGPTPNGYTHVLFINY 425

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           +  +G+    +   ++M + GI        A+L   A+ G +  A ++ + ++     P 
Sbjct: 426 HGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPD 485

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
             + T++++   +A + D+A   F  MI     PD     S+I    K    ++A  +  
Sbjct: 486 NITYTMMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLIDMLYKAGRGNEAWKIFY 545

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
           EL++   EP   TY  L+  LGR   + E  QLL  ++     P      ++ D   + G
Sbjct: 546 ELKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYNTVLDCLCKNG 605

Query: 517 IEKKALQAL 525
               AL  L
Sbjct: 606 EVNYALDML 614



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 103/243 (42%), Gaps = 5/243 (2%)

Query: 231  RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVP 290
            ++ ++   LY++     L  E F      Y  L+D   K+  +EDAE +  +M E G  P
Sbjct: 850  KMLDEAINLYYQ-----LMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEP 904

Query: 291  DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV 350
            +     +L++ Y  AG+ ++  E FES+   G  PD K Y  +I      G+   G+S  
Sbjct: 905  NCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYF 964

Query: 351  DMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410
              +   G+E     Y  L+    + G +  A  + N M  +   P L +   L+   G+A
Sbjct: 965  KQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKA 1024

Query: 411  GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATY 470
            G   +A   ++ ++  G KP+     ++I  Y      + A      +   G  P  +TY
Sbjct: 1025 GKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSPENAFAAYGRMIVGGCRPNSSTY 1084

Query: 471  TVL 473
              L
Sbjct: 1085 MQL 1087



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 74/325 (22%), Positives = 136/325 (41%), Gaps = 2/325 (0%)

Query: 245  ELVLSEESFQTNVR--DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMY 302
            ELV   E+   +++   Y+ LI     E+ ++ AE +  +M   G  PD  T  +++   
Sbjct: 752  ELVKKFENLGVSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAM 811

Query: 303  SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE 362
             K+  ++   +  E + + G++     YN++I   V +      ++L   +++ G   + 
Sbjct: 812  GKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTP 871

Query: 363  EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
              Y  LL    + G++  A  + + M     +P      +L+  Y  AGD ++    F+ 
Sbjct: 872  CTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFES 931

Query: 423  MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
            M+  G  PD +    +I        L+  L+   +L   G EP   TY +L+  LG+   
Sbjct: 932  MVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGR 991

Query: 483  INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFER 542
            + EA  L   + + G AP      SL     +AG   +A +    L AK  +     +  
Sbjct: 992  LEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNA 1051

Query: 543  IINGLLAGGFLQDAQRVHGLMEAQG 567
            +I G    G  ++A   +G M   G
Sbjct: 1052 LIRGYSVSGSPENAFAAYGRMIVGG 1076



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 98/424 (23%), Positives = 166/424 (39%), Gaps = 83/424 (19%)

Query: 210 LLAEWKEL-LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAH 267
           +  E KE+ L+P+   +  LL  L RE   +   ++ E  ++  SF  N+  Y+ ++D  
Sbjct: 543 IFYELKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLE-GMNSNSFPPNIITYNTVLDCL 601

Query: 268 AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA---------------- 311
            K   +  A  +L  M  NG +PD+ +   +++   K   LD A                
Sbjct: 602 CKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMYGLVKEDRLDEAFWMFCQMKKVLAPDYA 661

Query: 312 ---------------KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLG----MSLVDM 352
                          KEA  ++R +  QPD KV  S + + +     + G    +   + 
Sbjct: 662 TVCTILPSFVRSGLMKEALHTVREYILQPDSKVDRSSVHSLMEGILKRDGTEKSIEFAEN 721

Query: 353 MITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGD 412
           + +SG+   +     ++R   +  +   A ++  + + E    +L++ +      G   +
Sbjct: 722 IASSGLLLDDLFLSPIIRHLCKHKEALAAHEL--VKKFENLGVSLKTGSYNALICGLVDE 779

Query: 413 P--DQARSNFDYMIRLGHKPDDRCTASMIAAYG--------------------------- 443
              D A   F  M RLG  PD+     ++ A G                           
Sbjct: 780 DLIDIAEELFSEMKRLGCDPDEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTY 839

Query: 444 --------KKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
                   K  +LD+A+NL  +L  +GF P P TY  L+D L +   I +AE L  ++ E
Sbjct: 840 NTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLE 899

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ-MGPD--DFERIINGLLAGGF 552
            G  P   I   L + Y  AG  +K  +     E+  EQ M PD   +  +I+ L A G 
Sbjct: 900 CGCEPNCAIYNILLNGYRIAGDTEKVCE---LFESMVEQGMNPDIKSYTVVIDTLCADGR 956

Query: 553 LQDA 556
           L D 
Sbjct: 957 LNDG 960



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 77/360 (21%), Positives = 145/360 (40%), Gaps = 39/360 (10%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++  +  + NV  +  +  A   E  L  A   L  M E GIV +  T   L++   K+G
Sbjct: 126 LMQRQIIKANVGTFCTVFGAVGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLIYFLVKSG 185

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
               A + ++++ + G  P  + Y+ +++A+      +  + L+  M   G+  +   Y 
Sbjct: 186 FDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGLLGEMEARGVRPNVYSYT 245

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
             +R   Q G +  A +I   M  E  +P + + T+L++    AG    A+  F  M   
Sbjct: 246 ICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDAGRLADAKDVFWKMKAS 305

Query: 427 GHKPD--------DRCTAS---------------------------MIAAYGKKNLLDKA 451
             KPD        D+C  S                            + A  +   +D+A
Sbjct: 306 DQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYTAAVDALCQVGRVDEA 365

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
           L++  E+++ G  P   +Y  L+    +    N A +L   ++  G  P     V   + 
Sbjct: 366 LDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALELFNHMNIHGPTPNGYTHVLFINY 425

Query: 512 YARAGIEKKALQALGFLEAKKEQMGPDDF--ERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
           + ++G   KAL+    +++K   + PD      ++ GL   G L  A+RV   ++A G +
Sbjct: 426 HGKSGESLKALKRYELMKSKG--IVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGIS 483



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 95/219 (43%), Gaps = 1/219 (0%)

Query: 268 AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK 327
           AK   L  A+R+  ++   GI PD +T T+++   SKA N D A + F  +  +   PD 
Sbjct: 462 AKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAPDV 521

Query: 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNI 387
              NS+I     AG+      +   +    +E ++  Y  LL    + G V+   Q+   
Sbjct: 522 LAMNSLIDMLYKAGRGNEAWKIFYELKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEG 581

Query: 388 MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447
           M    F P + +   +++   + G+ + A      M   G  PD     +++    K++ 
Sbjct: 582 MNSNSFPPNIITYNTVLDCLCKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMYGLVKEDR 641

Query: 448 LDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           LD+A  +  +++K    P  AT   ++    R  L+ EA
Sbjct: 642 LDEAFWMFCQMKKV-LAPDYATVCTILPSFVRSGLMKEA 679



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 70/360 (19%), Positives = 133/360 (36%), Gaps = 49/360 (13%)

Query: 234 EQNTQLYFKVAE---LVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVP 290
           E+  +L+  VA    +V + ES    +    +L+ AH +   + D  ++   M    I  
Sbjct: 82  EEALELFLSVARQPRVVHTTESCNYML----ELMRAHGR---VGDVAQVFDLMQRQIIKA 134

Query: 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV 350
           ++ T   +       G L  A  A   ++  G   +   YN +I   V +G  +  M + 
Sbjct: 135 NVGTFCTVFGAVGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLIYFLVKSGFDREAMDVY 194

Query: 351 DMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410
             M   G+  +   Y  L+ +F +  D      +   M     +P + S T+ +   GQA
Sbjct: 195 KAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGLLGEMEARGVRPNVYSYTICIRVLGQA 254

Query: 411 GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATY 470
           G                                    L++A  +L ++E++G +P   T 
Sbjct: 255 GR-----------------------------------LEEAYRILRKMEEEGCKPDVVTN 279

Query: 471 TVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEA 530
           TVL+  L     + +A+ +  K+    + P     ++L D    +G  +   +    L+A
Sbjct: 280 TVLIQILCDAGRLADAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKA 339

Query: 531 KKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS----SQTFNR 586
                    +   ++ L   G + +A  V   M+ +G    +    +LIS    +  FNR
Sbjct: 340 DGYNDNVVSYTAAVDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNR 399


>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
          Length = 455

 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 119/261 (45%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E      V  Y+ L+ A   +    +A  ++++M   G+ PD+ T  +L++ + K GN
Sbjct: 170 MVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGN 229

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           + +A E FE++   G +     Y S+I A    GQ +    L D  +  GI     +Y A
Sbjct: 230 VKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNA 289

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+ S +  G++  A +I   M  +   P   +   L+      G  D+AR   D M + G
Sbjct: 290 LINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRG 349

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            +PD     ++I+ Y  K  +  AL +  E+   GF P   TY  L+  L +    ++AE
Sbjct: 350 IQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAE 409

Query: 488 QLLGKISELGEAPPFKIQVSL 508
            ++ ++ E G  P     +SL
Sbjct: 410 NMVKEMVENGITPDDSTYISL 430



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 92/192 (47%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +S    +  V  Y+ LI A +K+  +++ +++  +    GI PD+V    L++ +S +GN
Sbjct: 240 MSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGN 299

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +DRA E    +      PD   YN+++      G+      L+D M   GI+     Y  
Sbjct: 300 IDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNT 359

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+  ++  GDV+ A +I N M  + F PTL +   L++   + G  D A +    M+  G
Sbjct: 360 LISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENG 419

Query: 428 HKPDDRCTASMI 439
             PDD    S+I
Sbjct: 420 ITPDDSTYISLI 431



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 100/222 (45%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ LI+ H KE  ++ A  I + M+  G+   +VT T L++  SK G +    + F
Sbjct: 213 DVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLF 272

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           +     G +PD  +YN++I ++  +G       ++  M    I   +  Y  L+R     
Sbjct: 273 DEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLL 332

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G V  A ++ + M     QP L +   L+  Y   GD   A    + M+  G  P     
Sbjct: 333 GRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTY 392

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
            ++I    K    D A N++ E+ ++G  P  +TY  L++ L
Sbjct: 393 NALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGL 434



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 81/370 (21%), Positives = 151/370 (40%), Gaps = 37/370 (10%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNE-NGIVPDIVTSTVLVHMYSKAGNLDRAKEA 314
           N   Y+ +I        ++ A  I+++M E  GI P+  T   ++  + K G +D A + 
Sbjct: 71  NAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKV 130

Query: 315 FESLRSHG-FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF- 372
           F+ + + G  +P+  +YN++I  Y + G+    +   D M+  G+  +   Y  L+ +  
Sbjct: 131 FDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALF 190

Query: 373 --------------------------------AQC--GDVRGAGQITNIMRIEEFQPTLE 398
                                             C  G+V+ A +I   M     + T+ 
Sbjct: 191 MDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVV 250

Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
           + T L+ A  + G   +    FD  +R G +PD     ++I ++     +D+A  ++ E+
Sbjct: 251 TYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEM 310

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
           EK    P   TY  L+  L  L  ++EA +L+ ++++ G  P      +L   Y+  G  
Sbjct: 311 EKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDV 370

Query: 519 KKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVAL 578
           K AL+    +  K        +  +I GL   G   DA+ +   M   G    +   ++L
Sbjct: 371 KDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISL 430

Query: 579 ISSQTFNRQR 588
           I   T   +R
Sbjct: 431 IEGLTTEDER 440


>gi|357140125|ref|XP_003571621.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Brachypodium distachyon]
          Length = 814

 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 115/247 (46%), Gaps = 4/247 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENC----LEDAERILKKMNENGIVPDIVTSTVLVHMYS 303
           L  E  +  ++    L+ A  K+ C     ++A  I  KM E G+  +I TS  L+H   
Sbjct: 429 LISEMVKRGMKPNDALMTACTKQLCQGRRHQEAVGIWLKMLEKGLCINIATSNALIHGLC 488

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363
           +  N+  A E   ++ + G + D   YN MI       + +  + L D MI  G +    
Sbjct: 489 EGKNMKGATEVLRTMVNKGMELDNITYNIMIQGCCKDSKIEEALKLRDDMIRKGFKPDAY 548

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
           ++ +++ ++   G +  A  +   M+IE  QP + S   +++ Y +A D  +A    + +
Sbjct: 549 MFNSIIHAYCDLGKMEEALHLLGQMKIEGVQPDVVSYGTIIDGYCKAKDIQKANEYLNEL 608

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483
           +  G KP+     ++I  YG+   +  A+ +L  +E  G +P   TY  L+ W+    L+
Sbjct: 609 MACGLKPNAVIYNALIGGYGRNGNISGAIGVLDTMESIGIQPTNVTYCSLMHWMCHAGLV 668

Query: 484 NEAEQLL 490
           +EA+ + 
Sbjct: 669 DEAKTMF 675



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 115/246 (46%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           + F+ +   ++ +I A+     +E+A  +L +M   G+ PD+V+   ++  Y KA ++ +
Sbjct: 541 KGFKPDAYMFNSIIHAYCDLGKMEEALHLLGQMKIEGVQPDVVSYGTIIDGYCKAKDIQK 600

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A E    L + G +P+  +YN++I  Y   G     + ++D M + GI+ +   Y +L+ 
Sbjct: 601 ANEYLNELMACGLKPNAVIYNALIGGYGRNGNISGAIGVLDTMESIGIQPTNVTYCSLMH 660

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
                G V  A  +    R    +  +   T++++   + G  D+A + F+ M      P
Sbjct: 661 WMCHAGLVDEAKTMFEQSRKNSIEVGVVGYTIMIQGLCKIGKMDEAMNYFEEMRSRSIPP 720

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           +     +++ AY K    ++A  L  E+   G  P   +Y  LV    ++  +++A +  
Sbjct: 721 NKITYTTLMYAYCKSGNNEEASKLFDEMVSSGIVPDNVSYNTLVTGFSQVDSLDKAIEKA 780

Query: 491 GKISEL 496
            +IS +
Sbjct: 781 AEISSI 786



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/306 (21%), Positives = 135/306 (44%), Gaps = 7/306 (2%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E+    N+   + LI    +   ++ A  +L+ M   G+  D +T  +++    K   ++
Sbjct: 470 EKGLCINIATSNALIHGLCEGKNMKGATEVLRTMVNKGMELDNITYNIMIQGCCKDSKIE 529

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A +  + +   GF+PD  ++NS+I AY + G+ +  + L+  M   G++     Y  ++
Sbjct: 530 EALKLRDDMIRKGFKPDAYMFNSIIHAYCDLGKMEEALHLLGQMKIEGVQPDVVSYGTII 589

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
             + +  D++ A +  N +     +P       L+  YG+ G+   A    D M  +G +
Sbjct: 590 DGYCKAKDIQKANEYLNELMACGLKPNAVIYNALIGGYGRNGNISGAIGVLDTMESIGIQ 649

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           P +    S++       L+D+A  +  +  K+  E G   YT+++  L ++  ++EA   
Sbjct: 650 PTNVTYCSLMHWMCHAGLVDEAKTMFEQSRKNSIEVGVVGYTIMIQGLCKIGKMDEAMNY 709

Query: 490 LGKISELGEAPPFKIQ-VSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLL 548
             ++      PP KI   +L   Y ++G  ++A +   F E     + PD+        L
Sbjct: 710 FEEMRSR-SIPPNKITYTTLMYAYCKSGNNEEASKL--FDEMVSSGIVPDNVSY---NTL 763

Query: 549 AGGFLQ 554
             GF Q
Sbjct: 764 VTGFSQ 769



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 68/333 (20%), Positives = 144/333 (43%), Gaps = 36/333 (10%)

Query: 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320
           ++LID H ++    +A R+  +M    +    VT  ++     K G ++RA+   E + S
Sbjct: 340 NELIDWHCRKGHFTEAIRLFDEMVSKEMKSTAVTYNLIARALCKEGEMERAERILEEMLS 399

Query: 321 HGFQPDKKVYNSMIMAYVN-AGQPKLGMSLVDMMITSGIE-----------------RSE 362
            G      ++NS++   +   G+ +  + L+  M+  G++                 R +
Sbjct: 400 TGMTIHSGLFNSVVAGLLQRTGRLESVVRLISEMVKRGMKPNDALMTACTKQLCQGRRHQ 459

Query: 363 E---IYL---------------ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
           E   I+L               AL+    +  +++GA ++   M  +  +    +  +++
Sbjct: 460 EAVGIWLKMLEKGLCINIATSNALIHGLCEGKNMKGATEVLRTMVNKGMELDNITYNIMI 519

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
           +   +    ++A    D MIR G KPD     S+I AY     +++AL+LL +++ +G +
Sbjct: 520 QGCCKDSKIEEALKLRDDMIRKGFKPDAYMFNSIIHAYCDLGKMEEALHLLGQMKIEGVQ 579

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQA 524
           P   +Y  ++D   + + I +A + L ++   G  P   I  +L   Y R G    A+  
Sbjct: 580 PDVVSYGTIIDGYCKAKDIQKANEYLNELMACGLKPNAVIYNALIGGYGRNGNISGAIGV 639

Query: 525 LGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQ 557
           L  +E+   Q     +  +++ +   G + +A+
Sbjct: 640 LDTMESIGIQPTNVTYCSLMHWMCHAGLVDEAK 672



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 57/120 (47%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           +QP+ + + +L+  +         K       + S +  V  Y+ +I    K   +++A 
Sbjct: 648 IQPTNVTYCSLMHWMCHAGLVDEAKTMFEQSRKNSIEVGVVGYTIMIQGLCKIGKMDEAM 707

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
              ++M    I P+ +T T L++ Y K+GN + A + F+ + S G  PD   YN+++  +
Sbjct: 708 NYFEEMRSRSIPPNKITYTTLMYAYCKSGNNEEASKLFDEMVSSGIVPDNVSYNTLVTGF 767



 Score = 44.3 bits (103), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 73/365 (20%), Positives = 142/365 (38%), Gaps = 54/365 (14%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+DA  K   +++A R+  +M E+ + P +VT  +L++   ++            + 
Sbjct: 269 YNLLMDALCKSGRVDEAIRLKGRMEESRVAPSMVTFGILINGLKRSDRFGEVGALLREME 328

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P++ + N +I  +   G     + L D M++  ++ +   Y  + R+  + G++ 
Sbjct: 329 GLGITPNEVICNELIDWHCRKGHFTEAIRLFDEMVSKEMKSTAVTYNLIARALCKEGEME 388

Query: 380 GAGQITNIMRIEEFQPTLESC------TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
            A +I     +EE   T  +       +++     + G  +        M++ G KP+D 
Sbjct: 389 RAERI-----LEEMLSTGMTIHSGLFNSVVAGLLQRTGRLESVVRLISEMVKRGMKPNDA 443

Query: 434 ----CTASMIAAYGKKN---------LLDKALNL------------------------LL 456
               CT  +    G+++         +L+K L +                        L 
Sbjct: 444 LMTACTKQL--CQGRRHQEAVGIWLKMLEKGLCINIATSNALIHGLCEGKNMKGATEVLR 501

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
            +   G E    TY +++    +   I EA +L   +   G  P   +  S+   Y   G
Sbjct: 502 TMVNKGMELDNITYNIMIQGCCKDSKIEEALKLRDDMIRKGFKPDAYMFNSIIHAYCDLG 561

Query: 517 IEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERL 574
             ++AL  LG  + K E + PD   +  II+G      +Q A      + A G   +  +
Sbjct: 562 KMEEALHLLG--QMKIEGVQPDVVSYGTIIDGYCKAKDIQKANEYLNELMACGLKPNAVI 619

Query: 575 KVALI 579
             ALI
Sbjct: 620 YNALI 624



 Score = 40.8 bits (94), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 39/75 (52%)

Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311
           S   N   Y+ L+ A+ K    E+A ++  +M  +GIVPD V+   LV  +S+  +LD+A
Sbjct: 717 SIPPNKITYTTLMYAYCKSGNNEEASKLFDEMVSSGIVPDNVSYNTLVTGFSQVDSLDKA 776

Query: 312 KEAFESLRSHGFQPD 326
            E    + S   Q D
Sbjct: 777 IEKAAEISSIMTQND 791



 Score = 40.0 bits (92), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 57/272 (20%), Positives = 103/272 (37%), Gaps = 40/272 (14%)

Query: 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV 350
           D++ +T +    S  G+L  A +AF  L S    P  K  N                   
Sbjct: 159 DLLINTCVTS--SARGSLRLAVDAFHVLSSRRASPSVKTCN------------------- 197

Query: 351 DMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR-IEEFQPTLESCTLLVEAYGQ 409
                           ALL + A+ G++    ++ + MR  +   P   S T +++A  +
Sbjct: 198 ----------------ALLEALARTGNLGATCKVFDEMRDCKTVTPNGYSYTSMIKALCK 241

Query: 410 AGDPDQARSNFDYMIRLGHKPDDRCTAS--MIAAYGKKNLLDKALNLLLELEKDGFEPGP 467
            G  D        +I  G +          ++ A  K   +D+A+ L   +E+    P  
Sbjct: 242 VGKVDDGFKILSDLIHAGLQQSAGAVPYNLLMDALCKSGRVDEAIRLKGRMEESRVAPSM 301

Query: 468 ATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGF 527
            T+ +L++ L R     E   LL ++  LG  P   I   L D + R G   +A++    
Sbjct: 302 VTFGILINGLKRSDRFGEVGALLREMEGLGITPNEVICNELIDWHCRKGHFTEAIRLFDE 361

Query: 528 LEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           + +K+ +     +  I   L   G ++ A+R+
Sbjct: 362 MVSKEMKSTAVTYNLIARALCKEGEMERAERI 393


>gi|357123295|ref|XP_003563347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Brachypodium distachyon]
          Length = 800

 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 149/326 (45%), Gaps = 1/326 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG-NLDRAKEA 314
           +VR Y+ ++ A + E   E A  +  ++   G+ P  V   V++ +Y + G +  +    
Sbjct: 186 DVRAYTTVLHALSHEGRYERALELFAELKREGVAPTHVMYNVMLDVYGRMGRSWPQIVAM 245

Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
            E +R+ G +PD    +++I A    G     ++  + + + G       Y ALL+ F +
Sbjct: 246 LEEMRAAGVEPDGFTASTVIAACGRDGLVDEAVAFFEDLKSRGHVPCVVTYNALLQVFGK 305

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
            G+   A ++   M     +P   +   L  +Y +AG  ++A    D M+  G  P+   
Sbjct: 306 AGNYMEALRVLKEMEESGCKPDAVTYNELAGSYARAGFYEEAAKCLDTMVSKGILPNAFT 365

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
             +++ AYG    +D+AL L   ++K+GF P   TY +++  LG+    N   ++LG++S
Sbjct: 366 YNTIMTAYGNAGKVDEALALFDWMKKNGFIPYVNTYNLILGMLGKKSRFNVMLEMLGEMS 425

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQ 554
             G  P      ++  +  + G+E    + L  +++   ++  D F  +I+     G   
Sbjct: 426 RSGCTPNRVTWNTMLAVCGKRGMEGYVTRVLERMKSCGVELCRDTFNTLISAYGRCGSRA 485

Query: 555 DAQRVHGLMEAQGFAASERLKVALIS 580
           +A +++  M A GF        AL+S
Sbjct: 486 NAFKMYDEMTAAGFTPCLTTYNALLS 511



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 124/290 (42%)

Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338
           +L++M   G+ PD  T++ ++    + G +D A   FE L+S G  P    YN+++  + 
Sbjct: 245 MLEEMRAAGVEPDGFTASTVIAACGRDGLVDEAVAFFEDLKSRGHVPCVVTYNALLQVFG 304

Query: 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398
            AG     + ++  M  SG +     Y  L  S+A+ G    A +  + M  +   P   
Sbjct: 305 KAGNYMEALRVLKEMEESGCKPDAVTYNELAGSYARAGFYEEAAKCLDTMVSKGILPNAF 364

Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
           +   ++ AYG AG  D+A + FD+M + G  P       ++   GKK+  +  L +L E+
Sbjct: 365 TYNTIMTAYGNAGKVDEALALFDWMKKNGFIPYVNTYNLILGMLGKKSRFNVMLEMLGEM 424

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
            + G  P   T+  ++   G+  +     ++L ++   G         +L   Y R G  
Sbjct: 425 SRSGCTPNRVTWNTMLAVCGKRGMEGYVTRVLERMKSCGVELCRDTFNTLISAYGRCGSR 484

Query: 519 KKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
             A +    + A         +  +++ L   G    AQ +   M+ +GF
Sbjct: 485 ANAFKMYDEMTAAGFTPCLTTYNALLSVLSRQGDWTAAQSIINKMKNEGF 534



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/349 (20%), Positives = 142/349 (40%), Gaps = 39/349 (11%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N   Y+ ++ A+     +++A  +   M +NG +P + T  +++ M  K    +   E  
Sbjct: 362 NAFTYNTIMTAYGNAGKVDEALALFDWMKKNGFIPYVNTYNLILGMLGKKSRFNVMLEML 421

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G  P++  +N+M+      G       +++ M + G+E   + +  L+ ++ +C
Sbjct: 422 GEMSRSGCTPNRVTWNTMLAVCGKRGMEGYVTRVLERMKSCGVELCRDTFNTLISAYGRC 481

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD--- 432
           G    A ++ + M    F P L +   L+    + GD   A+S  + M   G KP+D   
Sbjct: 482 GSRANAFKMYDEMTAAGFTPCLTTYNALLSVLSRQGDWTAAQSIINKMKNEGFKPNDMSY 541

Query: 433 ----RCTA----------------------------SMIAAYGKKNLLDKALNLLLELEK 460
               +C A                            +++ +  K   L+       E+  
Sbjct: 542 SLLLQCHAKGGNAAGIEAIEKEVYEGTVFPSWVILRTLVISNFKCRRLEGIERAFQEVMA 601

Query: 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKK 520
            G +P    +  ++    +  +  +A ++   I + G +P      S+ DMYA++    +
Sbjct: 602 RGHKPDLVIFNSMLSMYAKNGMYRKAGEMFDSIKQGGLSPDLITYNSMMDMYAKSNESWE 661

Query: 521 ALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQG 567
           A + L  L  K  Q+ PD   +  ++NG    G +++AQR+   M A G
Sbjct: 662 AEKILKRL--KTSQLKPDVVSYNTVMNGFCKQGLIKEAQRILSEMIADG 708



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 109/248 (43%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +  E F+ N   YS L+  HAK       E I K++ E  + P  V    LV    K   
Sbjct: 529 MKNEGFKPNDMSYSLLLQCHAKGGNAAGIEAIEKEVYEGTVFPSWVILRTLVISNFKCRR 588

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L+  + AF+ + + G +PD  ++NSM+  Y   G  +    + D +   G+      Y +
Sbjct: 589 LEGIERAFQEVMARGHKPDLVIFNSMLSMYAKNGMYRKAGEMFDSIKQGGLSPDLITYNS 648

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++  +A+  +   A +I   ++  + +P + S   ++  + + G   +A+     MI  G
Sbjct: 649 MMDMYAKSNESWEAEKILKRLKTSQLKPDVVSYNTVMNGFCKQGLIKEAQRILSEMIADG 708

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            +P      +++  Y  + +  +A  ++  + +    P   TY  +VD   + +  +EA 
Sbjct: 709 VRPCVVTYHTLVGGYASREMFSEAREVVSYMIQRNLSPMELTYRRVVDSYCKAKRFDEAR 768

Query: 488 QLLGKISE 495
             L +I+E
Sbjct: 769 GFLYEIAE 776



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 69/352 (19%), Positives = 149/352 (42%), Gaps = 54/352 (15%)

Query: 220 PSRIDWINLLDRLREQNTQLY-------FKVAELVLSEESFQTNVRDYSKLIDAHAKENC 272
           P+R+ W  +L    ++  + Y        K   + L  ++F T       LI A+ +   
Sbjct: 431 PNRVTWNTMLAVCGKRGMEGYVTRVLERMKSCGVELCRDTFNT-------LISAYGRCGS 483

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
             +A ++  +M   G  P + T   L+ + S+ G+   A+     +++ GF+P+   Y+ 
Sbjct: 484 RANAFKMYDEMTAAGFTPCLTTYNALLSVLSRQGDWTAAQSIINKMKNEGFKPNDMSYSL 543

Query: 333 MIMAYVNAGQPKLGMSLVD-----------------MMITS-------GIERSEE----- 363
           ++  +   G    G+  ++                 ++I++       GIER+ +     
Sbjct: 544 LLQCHAKGGNAA-GIEAIEKEVYEGTVFPSWVILRTLVISNFKCRRLEGIERAFQEVMAR 602

Query: 364 -------IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
                  I+ ++L  +A+ G  R AG++ + ++     P L +   +++ Y ++ +  +A
Sbjct: 603 GHKPDLVIFNSMLSMYAKNGMYRKAGEMFDSIKQGGLSPDLITYNSMMDMYAKSNESWEA 662

Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476
                 +     KPD     +++  + K+ L+ +A  +L E+  DG  P   TY  LV  
Sbjct: 663 EKILKRLKTSQLKPDVVSYNTVMNGFCKQGLIKEAQRILSEMIADGVRPCVVTYHTLVGG 722

Query: 477 LGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFL 528
               ++ +EA +++  + +   +P       + D Y +A   K+  +A GFL
Sbjct: 723 YASREMFSEAREVVSYMIQRNLSPMELTYRRVVDSYCKA---KRFDEARGFL 771



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 81/182 (44%), Gaps = 1/182 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++ ++  +AK      A  +   + + G+ PD++T   ++ MY+K+     A++  + L+
Sbjct: 611 FNSMLSMYAKNGMYRKAGEMFDSIKQGGLSPDLITYNSMMDMYAKSNESWEAEKILKRLK 670

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           +   +PD   YN+++  +   G  K    ++  MI  G+      Y  L+  +A      
Sbjct: 671 TSQLKPDVVSYNTVMNGFCKQGLIKEAQRILSEMIADGVRPCVVTYHTLVGGYASREMFS 730

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++ + M      P   +   +V++Y +A   D+AR  F Y I    +  D+   S +
Sbjct: 731 EAREVVSYMIQRNLSPMELTYRRVVDSYCKAKRFDEAR-GFLYEIAETDRNSDQKLLSTL 789

Query: 440 AA 441
            A
Sbjct: 790 TA 791


>gi|242048586|ref|XP_002462039.1| hypothetical protein SORBIDRAFT_02g013138 [Sorghum bicolor]
 gi|241925416|gb|EER98560.1| hypothetical protein SORBIDRAFT_02g013138 [Sorghum bicolor]
          Length = 798

 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 106/386 (27%), Positives = 171/386 (44%), Gaps = 33/386 (8%)

Query: 220 PSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQ----TNVRDYSKLIDAHAKENCLED 275
           P+R  +  L+D L ++ T     V  L L +E  Q     NV+ ++ L+ +      L++
Sbjct: 207 PNRATYNVLMDGLCKRGT----AVDALKLFDEMLQRGITPNVKTHTILLSSMCNAGQLKE 262

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG-FQPDKKVYNSMI 334
           AE +L  M + G  PD VT    +    KAG +D A E  E+LR  G F    K Y+ +I
Sbjct: 263 AENLLNSMEDKGCPPDEVTYNAFLSGLCKAGRVDEAIERLEALRRTGTFVLGLKGYSCLI 322

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEI--YLALLRSFAQCGDVRGAGQITNIMRIEE 392
                AG+ + G     M +    + S +I  Y  ++R  A+ G +  A    + M+ + 
Sbjct: 323 DGLFLAGRYEEGFQCY-MEVLEQADFSPDIVLYTIMIRGCAEAGRIDDAFAFFDEMKEKR 381

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
           F P       L++A   +GD D ARS    M +     D      MI    KK L+D+A+
Sbjct: 382 FTPDTFCYNTLLKALCDSGDLDGARSLMSEMAQNNVVLDTNTHTIMIHGLCKKQLVDEAM 441

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVS----- 507
            +   + + G  P   TY VL+D L R   + EA  L  K+ E+G  P   ++++     
Sbjct: 442 QVFDGMVEVGCHPTVMTYNVLIDGLYRAHRLEEARMLFYKM-EVGNNPSLFLRLTLGANQ 500

Query: 508 ---------LCDMYARAGIEKKALQAL-GFLEAKKEQMGPD--DFERIINGLLAGGFLQD 555
                    L D   ++G   KA + L G +++    + PD   +  ++NGL     L  
Sbjct: 501 VKDSESLQKLVDSMCQSGQVLKAYKLLRGIMDSG---VVPDVVTYNTLLNGLCKVRNLDG 557

Query: 556 AQRVHGLMEAQGFAASERLKVALISS 581
           A R+   ++ +GF+  E     LI S
Sbjct: 558 ALRLFRELQVKGFSLDEITYGTLIDS 583



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 112/280 (40%), Gaps = 25/280 (8%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E+ F  +   Y+ L+ A      L+ A  ++ +M +N +V D  T T+++H   K   
Sbjct: 377 MKEKRFTPDTFCYNTLLKALCDSGDLDGARSLMSEMAQNNVVLDTNTHTIMIHGLCKKQL 436

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D A + F+ +   G  P    YN +I     A + +    L   M    +  +  ++L 
Sbjct: 437 VDEAMQVFDGMVEVGCHPTVMTYNVLIDGLYRAHRLEEARMLFYKM---EVGNNPSLFLR 493

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L           GA Q+ +           ES   LV++  Q+G   +A      ++  G
Sbjct: 494 L---------TLGANQVKDS----------ESLQKLVDSMCQSGQVLKAYKLLRGIMDSG 534

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD     +++    K   LD AL L  EL+  GF     TY  L+D L R    N+A 
Sbjct: 535 VVPDVVTYNTLLNGLCKVRNLDGALRLFRELQVKGFSLDEITYGTLIDSLLRAHRYNDAM 594

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGF 527
            L   I  +G  P   I  S+     R     K  QA+ F
Sbjct: 595 TLFQDILHIGGTPSLSIYNSIMRSLCRM---NKLSQAINF 631



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 71/143 (49%), Gaps = 10/143 (6%)

Query: 235 QNTQLYFKV---AELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPD 291
            N  L+ ++   A  V   ES Q       KL+D+  +   +  A ++L+ + ++G+VPD
Sbjct: 486 NNPSLFLRLTLGANQVKDSESLQ-------KLVDSMCQSGQVLKAYKLLRGIMDSGVVPD 538

Query: 292 IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVD 351
           +VT   L++   K  NLD A   F  L+  GF  D+  Y ++I + + A +    M+L  
Sbjct: 539 VVTYNTLLNGLCKVRNLDGALRLFRELQVKGFSLDEITYGTLIDSLLRAHRYNDAMTLFQ 598

Query: 352 MMITSGIERSEEIYLALLRSFAQ 374
            ++  G   S  IY +++RS  +
Sbjct: 599 DILHIGGTPSLSIYNSIMRSLCR 621



 Score = 46.6 bits (109), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 89/217 (41%), Gaps = 12/217 (5%)

Query: 283 MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
           ++   +VP ++ +     MY          +A    ++ G QP    + ++I A+ +AG+
Sbjct: 103 LHSRAVVPILLATDADAAMY----------DAIADAQAAGLQPPAAAFEALIFAHASAGR 152

Query: 343 PKLGMSLVDMMITS-GIERSEEIYLALLRSF-AQCGDVRGAGQITNIMRIEEFQPTLESC 400
               +     M    G   +  +Y A+LR   A  G V  A  + N M      P   + 
Sbjct: 153 HHEAVDAFSRMEGEFGCRPTTFVYNAVLRVLVASGGVVPLALALYNRMVAAGCLPNRATY 212

Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
            +L++   + G    A   FD M++ G  P+ +    ++++      L +A NLL  +E 
Sbjct: 213 NVLMDGLCKRGTAVDALKLFDEMLQRGITPNVKTHTILLSSMCNAGQLKEAENLLNSMED 272

Query: 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
            G  P   TY   +  L +   ++EA + L  +   G
Sbjct: 273 KGCPPDEVTYNAFLSGLCKAGRVDEAIERLEALRRTG 309



 Score = 42.0 bits (97), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 52/248 (20%), Positives = 94/248 (37%), Gaps = 20/248 (8%)

Query: 260 YSKLIDAHAKENCLEDAERILKKM-NENGIVPD-IVTSTVLVHMYSKAGNLDRAKEAFES 317
           +  LI AHA      +A     +M  E G  P   V + VL  + +  G +  A   +  
Sbjct: 140 FEALIFAHASAGRHHEAVDAFSRMEGEFGCRPTTFVYNAVLRVLVASGGVVPLALALYNR 199

Query: 318 LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
           + + G  P++  YN ++      G     + L D M+  GI  + + +  LL S    G 
Sbjct: 200 MVAAGCLPNRATYNVLMDGLCKRGTAVDALKLFDEMLQRGITPNVKTHTILLSSMCNAGQ 259

Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
           ++ A  + N M  +   P   +    +    +AG  D+A    + + R G          
Sbjct: 260 LKEAENLLNSMEDKGCPPDEVTYNAFLSGLCKAGRVDEAIERLEALRRTG--------TF 311

Query: 438 MIAAYGKKNLLD---------KALNLLLE-LEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
           ++   G   L+D         +     +E LE+  F P    YT+++        I++A 
Sbjct: 312 VLGLKGYSCLIDGLFLAGRYEEGFQCYMEVLEQADFSPDIVLYTIMIRGCAEAGRIDDAF 371

Query: 488 QLLGKISE 495
               ++ E
Sbjct: 372 AFFDEMKE 379


>gi|357474081|ref|XP_003607325.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355508380|gb|AES89522.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 90/383 (23%), Positives = 170/383 (44%), Gaps = 28/383 (7%)

Query: 214 WKELLQPSRIDWI----NLLDRLREQNT-----QLYFKVAELVLSEESFQTNVRDYSKLI 264
           ++ +L+   + W+    NLL  +  +N      QLY ++ E  +  + +  +V     ++
Sbjct: 173 FRTMLEHDLVPWVPIMNNLLTAMVRRNMVCDARQLYDEMVERGIYGDCYTLHV-----VM 227

Query: 265 DAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQ 324
            A  KE   E+ E+  K+    G+  D    ++LV    +  +L+ A E  + +R  G+ 
Sbjct: 228 RACMKEGKFEEVEKFFKEAKGRGLEVDAAAYSILVQAVCRRLDLNLACELLKEMREFGWV 287

Query: 325 PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQI 384
           P K  Y ++I+A V  G     + L D M++ G+  +  +  +L++ +   GDV  A Q+
Sbjct: 288 PSKGTYTAVIVACVKQGNFVEALRLKDEMVSVGLPMNVIVTRSLMKGYCVLGDVNLALQL 347

Query: 385 TNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGK 444
            + +      P +   ++L+    + GD ++A   +  M  +G +P+     S++  + +
Sbjct: 348 FDEVVEGGVVPDVVIFSVLINGCSKVGDMEKAYELYTRMKLMGIQPNVFIVNSLLEGFHE 407

Query: 445 KNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKI 504
           +NLL+ A  L  E  + G      TY +L+ WLG L  +NEA  L  K+   G  P    
Sbjct: 408 QNLLEHAYGLFDEAVEHGI-TNVVTYNILLKWLGELGKVNEACNLWEKMVSKGITPSLVS 466

Query: 505 QVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLME 564
             +L   + + G   KA   L  +  +  +     +  +I+G    G   D++R      
Sbjct: 467 YNNLILGHCKKGCMDKAYSMLKSILERGLKPNAVTYTLLIDGFFKKG---DSER------ 517

Query: 565 AQGFAASERLKVALI--SSQTFN 585
              F   E++  A I  +  TFN
Sbjct: 518 --AFVVFEQMMAANIAPTDHTFN 538



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/372 (20%), Positives = 150/372 (40%), Gaps = 5/372 (1%)

Query: 218 LQPSRIDWINLLDRLREQNT--QLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLED 275
           +QP+     +LL+   EQN     Y    E V   E   TNV  Y+ L+    +   + +
Sbjct: 391 IQPNVFIVNSLLEGFHEQNLLEHAYGLFDEAV---EHGITNVVTYNILLKWLGELGKVNE 447

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A  + +KM   GI P +V+   L+  + K G +D+A    +S+   G +P+   Y  +I 
Sbjct: 448 ACNLWEKMVSKGITPSLVSYNNLILGHCKKGCMDKAYSMLKSILERGLKPNAVTYTLLID 507

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
            +   G  +    + + M+ + I  ++  +  ++    + G V       N    + F  
Sbjct: 508 GFFKKGDSERAFVVFEQMMAANIAPTDHTFNTVINGLGKTGRVSETQDKLNNFIKQGFVS 567

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
           T  +   +++ + + G  D A   +  M   G  PD     S+I    K N +  AL + 
Sbjct: 568 TSITYNSIIDGFFKEGAVDSALLAYREMCESGISPDVITYTSLIDGLCKSNKIGLALEMH 627

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
            +++  G +     Y+ L+D   ++  +  A +   ++ ++G  P   +  S+   +   
Sbjct: 628 SDMKYKGMKLDVVAYSALIDGFCKMHDMESASKFFTELLDIGLTPNTVVYNSMISGFIHL 687

Query: 516 GIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLK 575
              + AL     +   K       +  II GLL  G L  A  ++  M ++       + 
Sbjct: 688 NNMEAALNLHQEMIKNKVPCDLQVYTSIIGGLLKEGKLSLALDLYSEMLSKDIVPDIVMY 747

Query: 576 VALISSQTFNRQ 587
             LI+  + N Q
Sbjct: 748 TVLINGLSNNGQ 759



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 134/315 (42%), Gaps = 7/315 (2%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS L+ A  +   L  A  +LK+M E G VP   T T ++    K GN   A    + + 
Sbjct: 258 YSILVQAVCRRLDLNLACELLKEMREFGWVPSKGTYTAVIVACVKQGNFVEALRLKDEMV 317

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           S G   +  V  S++  Y   G   L + L D ++  G+     I+  L+   ++ GD+ 
Sbjct: 318 SVGLPMNVIVTRSLMKGYCVLGDVNLALQLFDEVVEGGVVPDVVIFSVLINGCSKVGDME 377

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++   M++   QP +     L+E + +    + A   FD  +   H   +  T +++
Sbjct: 378 KAYELYTRMKLMGIQPNVFIVNSLLEGFHEQNLLEHAYGLFDEAVE--HGITNVVTYNIL 435

Query: 440 AAY-GKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
             + G+   +++A NL  ++   G  P   +Y  L+    +   +++A  +L  I E G 
Sbjct: 436 LKWLGELGKVNEACNLWEKMVSKGITPSLVSYNNLILGHCKKGCMDKAYSMLKSILERGL 495

Query: 499 APPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQDA 556
            P       L D + + G  ++A     F +     + P D  F  +INGL   G + + 
Sbjct: 496 KPNAVTYTLLIDGFFKKGDSERAFVV--FEQMMAANIAPTDHTFNTVINGLGKTGRVSET 553

Query: 557 QRVHGLMEAQGFAAS 571
           Q        QGF ++
Sbjct: 554 QDKLNNFIKQGFVST 568



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 102/235 (43%), Gaps = 2/235 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E     +V  Y+ LID   K N +  A  +   M   G+  D+V  + L+  + K  +
Sbjct: 595 MCESGISPDVITYTSLIDGLCKSNKIGLALEMHSDMKYKGMKLDVVAYSALIDGFCKMHD 654

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           ++ A + F  L   G  P+  VYNSMI  +++    +  ++L   MI + +    ++Y +
Sbjct: 655 MESASKFFTELLDIGLTPNTVVYNSMISGFIHLNNMEAALNLHQEMIKNKVPCDLQVYTS 714

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++    + G +  A  + + M  ++  P +   T+L+      G  + A      M    
Sbjct: 715 IIGGLLKEGKLSLALDLYSEMLSKDIVPDIVMYTVLINGLSNNGQLENASKILKEMDGNN 774

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
             P       +IA   ++  L +A  L  E+   G  P   TY +LV+  G+L++
Sbjct: 775 ITPSVLVYNILIAGNFREGNLQEAFRLHDEMLDKGLVPDDTTYDILVN--GKLKV 827


>gi|414872432|tpg|DAA50989.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 604

 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 102/412 (24%), Positives = 170/412 (41%), Gaps = 23/412 (5%)

Query: 170 EKIHE-RGEMILPEEPKPITGKCKLITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWIN 227
           EK+H+   EM       P T     +      L + +    LL E KE+ +QP+   +  
Sbjct: 178 EKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTM 237

Query: 228 LLDRLREQNTQLYFKVAE----LVLSEE----SFQTNVRDYSKLIDAHAKENCLEDAERI 279
           L+         L+FK  +    L L EE      + +V  Y++LI    K   +++A   
Sbjct: 238 LI--------ALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHF 289

Query: 280 LKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA-YV 338
             +M   G  PD V    +++   KAG LD A + F+ + +    P    YN++I A + 
Sbjct: 290 FCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFE 349

Query: 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398
           +  +     S  + M  SGI  S   Y  L+  F +   +  A  +   M  + F P   
Sbjct: 350 SKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPA 409

Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
           +   L++A G+A   D A   F  +         R  A MI   GK   LD A+N+  E+
Sbjct: 410 AYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEM 469

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
            K G  P    Y  L+  L R  +++EA   + ++ E G  P       + +  A+ G  
Sbjct: 470 NKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGP 529

Query: 519 KKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
            +A++ L     K+  + PD   +  ++  L   G  ++A ++   M   GF
Sbjct: 530 HRAMEMLS--NMKQSTVRPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLGF 579



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 84/345 (24%), Positives = 154/345 (44%), Gaps = 27/345 (7%)

Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAE------RILKKMNENGIVPDIVTSTVLVHMYSKA 305
           +++ +   Y  LI      +CLE  E      +++++M  N I   +VT T L  +    
Sbjct: 85  NYEHDTSTYMALI------HCLEVVEQYGEMWKMIQEMVRNPIC--VVTPTELSDVVRML 136

Query: 306 GNLDRAKEA---FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE 362
           GN    ++A   F  +++   QP  + YNSMI+  ++ GQ +    L + M T G    +
Sbjct: 137 GNAKMVRQAITIFYQIKTRKCQPIAQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPD 196

Query: 363 EI-YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421
            + Y AL+ +F + G    A Q+ N M+    QPT +  T+L+  + +  D   A S F+
Sbjct: 197 TVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFE 256

Query: 422 YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ 481
            M     +PD      +I   GK   +D+A +   E++++G  P       ++++LG+  
Sbjct: 257 EMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAG 316

Query: 482 LINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKK--ALQALGFLEAKKEQ-MGPD 538
            +++A +L  ++  L   P     V   +   +A  E K  A +   + E  KE  + P 
Sbjct: 317 RLDDAMKLFQEMETLRCIP----SVVTYNTIIKALFESKSRASEVPSWFERMKESGISPS 372

Query: 539 DFER--IINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
            F    +I+G      ++ A  +   M+ +GF        +LI +
Sbjct: 373 SFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDA 417



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 128/323 (39%), Gaps = 43/323 (13%)

Query: 298 LVHMYSKAGNLDRAKEAFESLRSHGFQ-PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           ++ M    G  ++  + +  + + G   PD   Y+++I A+   G+    + L++ M   
Sbjct: 167 MIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEMKEI 226

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
           G++ + +IY  L+  F +  D  GA  +   MR +  +P + + T L+   G+AG  D+A
Sbjct: 227 GMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEA 286

Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELE----------------- 459
              F  M R G +PD     +MI   GK   LD A+ L  E+E                 
Sbjct: 287 YHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKA 346

Query: 460 -------------------KDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
                              + G  P   TY++L+D   +   + +A  LL ++ E G  P
Sbjct: 347 LFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPP 406

Query: 501 PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD---FERIINGLLAGGFLQDAQ 557
                 SL D   +A   K+   A    +  KE  G      +  +I  L   G L DA 
Sbjct: 407 CPAAYCSLIDALGKA---KRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAI 463

Query: 558 RVHGLMEAQGFAASERLKVALIS 580
            +   M   G A       AL+S
Sbjct: 464 NMFDEMNKLGCAPDVYAYNALMS 486



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 64/267 (23%), Positives = 115/267 (43%), Gaps = 11/267 (4%)

Query: 220 PSRIDWINLLDRLREQNTQL------YFKVAELVLSEESFQTNVRDYSKLIDAHAKENCL 273
           PS + +  ++  L E  ++       + ++ E  +S  SF      YS LID   K N +
Sbjct: 335 PSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFT-----YSILIDGFCKTNRM 389

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           E A  +L++M+E G  P       L+    KA   D A E F+ L+ +      +VY  M
Sbjct: 390 EKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVM 449

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           I     AG+    +++ D M   G       Y AL+   A+ G +  A      M+    
Sbjct: 450 IKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGC 509

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
            P + S  +++    + G P +A      M +   +PD     +++ A     + ++A  
Sbjct: 510 IPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASK 569

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRL 480
           L+ E+   GFE    TY+ +++ +G++
Sbjct: 570 LMKEMNTLGFEYDLITYSSILEAIGKV 596


>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
          Length = 1088

 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 77/326 (23%), Positives = 143/326 (43%), Gaps = 4/326 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ LI        L+ A  +  +M+ +G+ P+ VT   L+++  +   +  A    
Sbjct: 524 NVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVL 583

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +  +G   +   YN MI  Y   G PK  M +++ M+  G   +   Y  +++ +   
Sbjct: 584 NLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDS 643

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G+   A +I ++MR    +P   S T L+  + +    + A   F+ M+  G  P++   
Sbjct: 644 GNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTY 703

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I  Y K   LD A +LL  +++ G  P   TY VL+  L +    + AE+L   + E
Sbjct: 704 TALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIE 763

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFL 553
            G  P      ++ D   + G    AL+   F +  ++   P+   +  +I  L   G +
Sbjct: 764 EGIFPNVVTYTAMIDGLCKNGSTSLALEM--FNKMIEQGCLPNLLTYSSLIRALGQEGKV 821

Query: 554 QDAQRVHGLMEAQGFAASERLKVALI 579
           ++A+ +   +E  G    E   V +I
Sbjct: 822 EEAENLFAELERHGLIPDEITYVKMI 847



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 122/288 (42%), Gaps = 4/288 (1%)

Query: 215 KELLQPSRIDWINLLDRLREQN--TQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC 272
           KE  +P+ + +  L++ L +     + +  + E++L            +  I A     C
Sbjct: 448 KEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMIL--HGILPTAHTCTGPIIALCDMGC 505

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
            EDA R+   M   G  P++ T T L+     +G L  A   F  +   G  P+   YN+
Sbjct: 506 YEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNA 565

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I   V   + K    ++++M  +G+  +   Y  +++ +   GD + A  + N M    
Sbjct: 566 LINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRG 625

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
               L +   +++ Y  +G+   A    D M   G KPD+     +I  + K + ++ A 
Sbjct: 626 HSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAF 685

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
            L  E+  DG  P   TYT L+D   + + ++ A  LL  +   G  P
Sbjct: 686 GLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRP 733



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 116/262 (44%), Gaps = 3/262 (1%)

Query: 242 KVAELVLS---EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVL 298
           K A LV++   +     N+  Y+ +I  +        A RIL  M + G  PD  + T L
Sbjct: 612 KKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTEL 671

Query: 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
           +  + K   ++ A   F  +   G  P++  Y ++I  Y    +     SL++ M  SG 
Sbjct: 672 ICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGC 731

Query: 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418
             + + Y  L+    +  +  GA ++  +M  E   P + + T +++   + G    A  
Sbjct: 732 RPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALE 791

Query: 419 NFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLG 478
            F+ MI  G  P+    +S+I A G++  +++A NL  ELE+ G  P   TY  +++   
Sbjct: 792 MFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYI 851

Query: 479 RLQLINEAEQLLGKISELGEAP 500
               +  A   LG++ + G  P
Sbjct: 852 MSGKVEHAFNFLGRMIKAGCQP 873



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/368 (20%), Positives = 155/368 (42%), Gaps = 6/368 (1%)

Query: 220 PSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERI 279
           P+ + +  L++ L E     Y  V   ++      TN+  Y+++I  +      + A  +
Sbjct: 558 PNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLV 617

Query: 280 LKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339
           +  M + G   ++VT   ++  Y  +GN   A    + +R  G +PD+  Y  +I  +  
Sbjct: 618 MNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCK 677

Query: 340 AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLES 399
             + +    L + M+  G+  +E  Y AL+  + +   +  A  +   M+    +P +++
Sbjct: 678 ISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQT 737

Query: 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELE 459
             +L+    +  +   A      MI  G  P+     +MI    K      AL +  ++ 
Sbjct: 738 YNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMI 797

Query: 460 KDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEK 519
           + G  P   TY+ L+  LG+   + EAE L  ++   G  P     V + + Y  +G  +
Sbjct: 798 EQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVE 857

Query: 520 KALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLME-----AQGFAASERL 574
            A   LG +     Q     +  +I GL     L D QR+  L +     + G+  +++ 
Sbjct: 858 HAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLAD-QRLAALPDVVPNCSFGYQTTDQD 916

Query: 575 KVALISSQ 582
            V+++S++
Sbjct: 917 AVSVMSAK 924



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/337 (21%), Positives = 138/337 (40%), Gaps = 15/337 (4%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +++E  + N   YS LI+       + +A  ++++M  +GI+P   T T  +      G 
Sbjct: 446 MAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGC 505

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            + A   F  +++ G +P+   Y ++I     +G  K+ + L   M   G+  +   Y A
Sbjct: 506 YEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNA 565

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    +   ++ A  + N+M        + +   +++ Y   GDP +A    + M++ G
Sbjct: 566 LINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRG 625

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
           H  +     ++I  Y        AL +L  +   G +P   +YT L+    ++  +  A 
Sbjct: 626 HSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAF 685

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
            L  ++ + G  P      +L D Y +   ++K   A   LE  K   G     +  N L
Sbjct: 686 GLFNEMVDDGLCPNEVTYTALIDGYCK---DEKLDTATSLLEHMKRS-GCRPNVQTYNVL 741

Query: 548 LAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTF 584
                      +HGL +   F+ +E L   +I    F
Sbjct: 742 -----------IHGLTKQNNFSGAEELCKVMIEEGIF 767



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/334 (21%), Positives = 122/334 (36%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           +LS+   +  +  YS L+   ++            +M   G+ P+++    +++   K G
Sbjct: 340 MLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDG 399

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           N+  A+   + +      PD   Y SMI+ +         + + + M   G E +   Y 
Sbjct: 400 NVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYS 459

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+      G V  A  +   M +    PT  +CT  + A    G  + A   F  M   
Sbjct: 460 TLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNK 519

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G +P+     ++I+      LL  A+ L   + +DG  P   TY  L++ L   + I  A
Sbjct: 520 GCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYA 579

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
             +L  +   G          +   Y   G  KKA+  +  +  +        +  II G
Sbjct: 580 FVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKG 639

Query: 547 LLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
               G    A R+  LM   G    E     LI 
Sbjct: 640 YCDSGNTTSALRILDLMRDGGCKPDEWSYTELIC 673



 Score = 46.6 bits (109), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 52/263 (19%), Positives = 107/263 (40%), Gaps = 4/263 (1%)

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           + R     + L   G +     Y+++++     G     M     M++ G++ +  IY A
Sbjct: 331 MARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNA 390

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++ +  + G+V  A  I   +   E  P   + T ++  + +  D D A   F+ M + G
Sbjct: 391 VINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEG 450

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            +P+    +++I        +++A +L+ E+   G  P   T T  +  L  +    +A 
Sbjct: 451 CEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAW 510

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIIN 545
           +L   +   G  P      +L      +G+ K A+    F    ++ + P+   +  +IN
Sbjct: 511 RLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGL--FHRMSRDGVFPNTVTYNALIN 568

Query: 546 GLLAGGFLQDAQRVHGLMEAQGF 568
            L+    ++ A  V  LM   G 
Sbjct: 569 ILVENRRIKYAFVVLNLMGRNGL 591


>gi|359494794|ref|XP_002267896.2| PREDICTED: pentatricopeptide repeat-containing protein At3g07290,
           mitochondrial [Vitis vinifera]
          Length = 876

 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 75/330 (22%), Positives = 143/330 (43%), Gaps = 4/330 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ LID   +E  +E+A  + +KM ++G+ P I+T   L++ Y K G +  A +  
Sbjct: 311 NVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLL 370

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +     +P+ + YN ++       +      L+  ++ +G+      Y  L+  F + 
Sbjct: 371 SVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKE 430

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A  I N M     +P   + T L++   + G  +QA      M++ G   D+   
Sbjct: 431 GQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTF 490

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I  + K         L   + ++       T+   +D LG+   +NEA  +LGK+ +
Sbjct: 491 TALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMK 550

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFL 553
            G  P       L + + RAG    +L+ L     K+    P+   +  IINGL   G +
Sbjct: 551 YGLVPSVVTHTILIEGHCRAGETALSLKMLE--RMKQAGCSPNVYTYTIIINGLCNNGRV 608

Query: 554 QDAQRVHGLMEAQGFAASERLKVALISSQT 583
           ++A+ +   M + G + +      L+ +  
Sbjct: 609 EEAETILFSMSSFGVSPNHFTYAVLVKAHV 638



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 140/310 (45%), Gaps = 4/310 (1%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           V+ + + + N+R Y++L++   + +    A  +L+++ +NG++PD VT  +LV  + K G
Sbjct: 372 VMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEG 431

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            L+ A   F S+ S G +PD   + ++I      G+ +    ++  M+  GI   E  + 
Sbjct: 432 QLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFT 491

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           AL+    + G  +    +   M       T  +    ++A G+    ++A +    M++ 
Sbjct: 492 ALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKY 551

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G  P       +I  + +      +L +L  +++ G  P   TYT++++ L     + EA
Sbjct: 552 GLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEA 611

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
           E +L  +S  G +P       L   + +AG   +A Q +  +     Q  P+    I + 
Sbjct: 612 ETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQ--PN--SHIYSA 667

Query: 547 LLAGGFLQDA 556
           LL+G  L + 
Sbjct: 668 LLSGFVLSNT 677



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 142/345 (41%), Gaps = 4/345 (1%)

Query: 243 VAELV---LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLV 299
           VA LV   +  E F     DY  +++A  K   ++ AE    K+   G   D    T LV
Sbjct: 154 VAFLVYRRMVNEGFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLV 213

Query: 300 HMYSKAGNLDRAKEAFESL-RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
               +  +L  A   FE + +    +P+   Y+ +I     AG+ +    L   M+  G 
Sbjct: 214 LANCRRDDLGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGC 273

Query: 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418
           + S   Y  L+++    G    A ++ + M  +   P + + T+L++   + G  ++A  
Sbjct: 274 QPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANG 333

Query: 419 NFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLG 478
            F  M++ G  P      ++I  Y K+  +  A  LL  +EK   +P   TY  L++ L 
Sbjct: 334 VFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLC 393

Query: 479 RLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
           R+    +A  LL ++ + G  P       L D + + G    A      + +   +    
Sbjct: 394 RVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGF 453

Query: 539 DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQT 583
            F  +I+GL   G L+ A  + G M  +G +  E    ALI    
Sbjct: 454 TFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHC 498



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 121/276 (43%)

Query: 241 FKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
           F+V E +  EE+ + N   YS LI    +   LE+A ++ ++M E G  P   T TVL+ 
Sbjct: 226 FRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIK 285

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
                G  D+A +  + + +    P+   Y  +I      G+ +    +   M+  G+  
Sbjct: 286 AKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCP 345

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
               + AL+  + + G V  A Q+ ++M     +P + +   L+E   +     +A    
Sbjct: 346 GIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLL 405

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
             ++  G  PD      ++  + K+  L+ A N+   +   G EP   T+T L+D L +L
Sbjct: 406 RRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKL 465

Query: 481 QLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
             + +A  +LG + + G +       +L D + + G
Sbjct: 466 GRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIG 501



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 126/282 (44%), Gaps = 12/282 (4%)

Query: 218 LQPSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L PS +    L++   R   T L  K+ E  + +     NV  Y+ +I+       +E+A
Sbjct: 553 LVPSVVTHTILIEGHCRAGETALSLKMLER-MKQAGCSPNVYTYTIIINGLCNNGRVEEA 611

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
           E IL  M+  G+ P+  T  VLV  + KAG LDRA +   ++  +G QP+  +Y++++  
Sbjct: 612 ETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSG 671

Query: 337 YV--NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
           +V  N       +S    +    +   E     L     +  DV  A +I + ++ +   
Sbjct: 672 FVLSNTAIGARALSSTGDLDARSLSSEENDNNCLSSHVFRLMDVDHALKIRDEIK-KCGV 730

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           PT +    LV    + G   +A      M++ G  PD +  +S+I  Y K    D  L  
Sbjct: 731 PTEDLYNFLVVGLCKEGRIIEADQLTQDMVKHGLFPD-KAISSIIEHYCKTCKYDNCLEF 789

Query: 455 LLELEKDGFEPGPATYTVLVDWL---GRLQLINEAEQLLGKI 493
           +  +  + F P  A+Y  ++  L   GR+Q   EA++L+  +
Sbjct: 790 MKLVLDNKFVPSFASYCWVIHGLRNEGRVQ---EAQKLVSDL 828


>gi|326435879|gb|EGD81449.1| hypothetical protein PTSG_11845 [Salpingoeca sp. ATCC 50818]
          Length = 695

 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 97/206 (47%)

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A+  F+++   G  P    YN ++ AY ++  P+L   +VD M   G+  +E  Y   + 
Sbjct: 413 ARAVFDTMVRSGIAPTTTAYNKLVKAYAHSRSPELAARVVDTMRGDGLLPNETTYRCWMY 472

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
            +A+  D  GA  + + M++   QP  ++  +LV  Y  AG+   AR+  D MI  G +P
Sbjct: 473 GYARTRDPAGAEALLHEMQLHGMQPCAQTFNILVYCYAMAGEVGTARAVIDRMIECGERP 532

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
                  +  AYG+++ LD    L+ ++ +    P   TY  L+        +++AE  +
Sbjct: 533 LTVSFNVLANAYGRQHNLDALRALVTDMAEANVAPNLVTYNTLIKSFCMNHQVDKAEATV 592

Query: 491 GKISELGEAPPFKIQVSLCDMYARAG 516
           G++ E G A       +L   YAR G
Sbjct: 593 GRMIESGLAGDLSTWGALAGAYARKG 618



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/284 (22%), Positives = 120/284 (42%), Gaps = 22/284 (7%)

Query: 226 INLLDRLREQNTQLYFKVAELVL-----------SEESFQTNVRD--------YSKLIDA 266
           + + D L+ Q+T+L   V   ++           +   F T VR         Y+KL+ A
Sbjct: 379 LAMFDSLQRQHTRLSLSVYLCIMDALAQTAQPQEARAVFDTMVRSGIAPTTTAYNKLVKA 438

Query: 267 HAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPD 326
           +A     E A R++  M  +G++P+  T    ++ Y++  +   A+     ++ HG QP 
Sbjct: 439 YAHSRSPELAARVVDTMRGDGLLPNETTYRCWMYGYARTRDPAGAEALLHEMQLHGMQPC 498

Query: 327 KKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL-RSFAQCGDVRGAGQIT 385
            + +N ++  Y  AG+     +++D MI  G ER   +   +L  ++ +  ++     + 
Sbjct: 499 AQTFNILVYCYAMAGEVGTARAVIDRMIECG-ERPLTVSFNVLANAYGRQHNLDALRALV 557

Query: 386 NIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKK 445
             M      P L +   L++++      D+A +    MI  G   D     ++  AY +K
Sbjct: 558 TDMAEANVAPNLVTYNTLIKSFCMNHQVDKAEATVGRMIESGLAGDLSTWGALAGAYARK 617

Query: 446 NLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
             +D  L         G  P    + ++V  L R   + EAE+L
Sbjct: 618 GHIDSLLLTFRRCIAGGCLPNKQMFDMVVFLLSRAS-VPEAERL 660



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 87/203 (42%)

Query: 298 LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG 357
           +V  Y+    L  A+   +++R  G +P    +  ++MA+  A +  + +++ D +    
Sbjct: 330 VVWCYALCKELSAARALLQTMRQAGVEPTMDTHAFVMMAHGRAYEADMALAMFDSLQRQH 389

Query: 358 IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
              S  +YL ++ + AQ    + A  + + M      PT  +   LV+AY  +  P+ A 
Sbjct: 390 TRLSLSVYLCIMDALAQTAQPQEARAVFDTMVRSGIAPTTTAYNKLVKAYAHSRSPELAA 449

Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
              D M   G  P++      +  Y +      A  LL E++  G +P   T+ +LV   
Sbjct: 450 RVVDTMRGDGLLPNETTYRCWMYGYARTRDPAGAEALLHEMQLHGMQPCAQTFNILVYCY 509

Query: 478 GRLQLINEAEQLLGKISELGEAP 500
                +  A  ++ ++ E GE P
Sbjct: 510 AMAGEVGTARAVIDRMIECGERP 532


>gi|297739257|emb|CBI28908.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 74/324 (22%), Positives = 143/324 (44%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E   + ++  ++ L++       +E AER+ + M    I PD+V+   ++  Y KAGN
Sbjct: 216 MKESGIEPSLYTFNFLLNGLVNSMFIESAERVFEVMECGKIGPDVVSYNTMIKGYCKAGN 275

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
             +A E F  +     +PDK  Y ++I A  + G     + L   M   G+E     Y  
Sbjct: 276 TKKAMEKFTDMEKRNLEPDKITYLTLIQACYSEGNFDSCLHLYQEMEERGLEIPPHAYSL 335

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++    + G       +   M  +  +  +   T L++AYG+ G+ ++A + F+ M   G
Sbjct: 336 VIGGLCKDGRTVEGSSVFENMNKKGCKANVAIYTALIDAYGKNGNVNEAINLFERMKGEG 395

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            +PDD     ++    K   LD+A+      + +        Y+ L+D LG+   ++EAE
Sbjct: 396 FEPDDVTYGVIVNGLCKSGRLDEAVEYFEFCKDNEVAVNAMFYSSLIDGLGKAGRVDEAE 455

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
           +   ++ E G         +L D  A++G  ++AL     +E +        +  +I+GL
Sbjct: 456 KFFEEMVERGCPQDSYCYNALIDALAKSGKMEEALVLFKRMEKEGCDQTVYTYTILISGL 515

Query: 548 LAGGFLQDAQRVHGLMEAQGFAAS 571
                 ++A ++  LM  +G   +
Sbjct: 516 FKEHRNEEALKLWDLMIDKGITPT 539



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 82/336 (24%), Positives = 146/336 (43%), Gaps = 6/336 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
             E+ F   V   + LI +      +E+   + ++M E+GI P + T   L++    +  
Sbjct: 181 FKEKGFLMTVFAANSLIRSFGALGMVEELLWVWRRMKESGIEPSLYTFNFLLNGLVNSMF 240

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           ++ A+  FE +      PD   YN+MI  Y  AG  K  M     M    +E  +  YL 
Sbjct: 241 IESAERVFEVMECGKIGPDVVSYNTMIKGYCKAGNTKKAMEKFTDMEKRNLEPDKITYLT 300

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+++    G+      +   M     +    + +L++    + G   +  S F+ M + G
Sbjct: 301 LIQACYSEGNFDSCLHLYQEMEERGLEIPPHAYSLVIGGLCKDGRTVEGSSVFENMNKKG 360

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            K +     ++I AYGK   +++A+NL   ++ +GFEP   TY V+V+ L +   ++EA 
Sbjct: 361 CKANVAIYTALIDAYGKNGNVNEAINLFERMKGEGFEPDDVTYGVIVNGLCKSGRLDEAV 420

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD---FERII 544
           +      +   A       SL D   +AG   +  +A  F E   E+  P D   +  +I
Sbjct: 421 EYFEFCKDNEVAVNAMFYSSLIDGLGKAG---RVDEAEKFFEEMVERGCPQDSYCYNALI 477

Query: 545 NGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
           + L   G +++A  +   ME +G   +      LIS
Sbjct: 478 DALAKSGKMEEALVLFKRMEKEGCDQTVYTYTILIS 513



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 113/261 (43%), Gaps = 4/261 (1%)

Query: 298 LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG 357
           L+ + S + + DR +  F   +  GF       NS+I ++   G  +  + +   M  SG
Sbjct: 161 LIDVLSLSSDFDRVRCIFGEFKEKGFLMTVFAANSLIRSFGALGMVEELLWVWRRMKESG 220

Query: 358 IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
           IE S   +  LL        +  A ++  +M   +  P + S   +++ Y +AG+  +A 
Sbjct: 221 IEPSLYTFNFLLNGLVNSMFIESAERVFEVMECGKIGPDVVSYNTMIKGYCKAGNTKKAM 280

Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
             F  M +   +PD     ++I A   +   D  L+L  E+E+ G E  P  Y++++  L
Sbjct: 281 EKFTDMEKRNLEPDKITYLTLIQACYSEGNFDSCLHLYQEMEERGLEIPPHAYSLVIGGL 340

Query: 478 GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP 537
            +     E   +   +++ G      I  +L D Y + G   +A+    F   K E   P
Sbjct: 341 CKDGRTVEGSSVFENMNKKGCKANVAIYTALIDAYGKNGNVNEAINL--FERMKGEGFEP 398

Query: 538 DD--FERIINGLLAGGFLQDA 556
           DD  +  I+NGL   G L +A
Sbjct: 399 DDVTYGVIVNGLCKSGRLDEA 419



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 124/278 (44%), Gaps = 1/278 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           ++++  + NV  Y+ LIDA+ K   + +A  + ++M   G  PD VT  V+V+   K+G 
Sbjct: 356 MNKKGCKANVAIYTALIDAYGKNGNVNEAINLFERMKGEGFEPDDVTYGVIVNGLCKSGR 415

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           LD A E FE  + +    +   Y+S+I     AG+        + M+  G  +    Y A
Sbjct: 416 LDEAVEYFEFCKDNEVAVNAMFYSSLIDGLGKAGRVDEAEKFFEEMVERGCPQDSYCYNA 475

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+ + A+ G +  A  +   M  E    T+ + T+L+    +    ++A   +D MI  G
Sbjct: 476 LIDALAKSGKMEEALVLFKRMEKEGCDQTVYTYTILISGLFKEHRNEEALKLWDLMIDKG 535

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P      ++         + +A  +L EL   G  P  A +  +++ L +     +A 
Sbjct: 536 ITPTTASFRALSVGLCLSGKVARACKILDELAPMGVIPETA-FEDMINVLCKAGRTEQAC 594

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
           +L   I + G   P +++  L +   +AG    A++ +
Sbjct: 595 KLADGIVDRGREVPGRVRTILINALRKAGNADLAMKLM 632


>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Brachypodium distachyon]
          Length = 966

 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 76/359 (21%), Positives = 146/359 (40%), Gaps = 53/359 (14%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           + F  +   Y+K+I    +   +E +  + ++M   G+ PD+ T T+L+  + KAG +++
Sbjct: 446 KGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYTILIDSFCKAGLIEQ 505

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A+  F+ +RS G  P+   Y +++ AY+ + Q      +   M+ +    +   Y AL+ 
Sbjct: 506 ARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAACYPNAVTYSALID 565

Query: 371 SFAQCGDVRGAGQIT--------NIMRIEEFQPTLESCTL-------------------- 402
              + G+++ A ++         N+     F+   ++CT+                    
Sbjct: 566 GLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGN-DTCTIAPNVVTYGALIDGLCKAQKV 624

Query: 403 ------------------------LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
                                   L++ + + G  D A+  F  M + G+ P      S+
Sbjct: 625 SDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSL 684

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           I    K   LD A+ +L E+  D   P   TYT ++D L ++  I +A  LL  + E G 
Sbjct: 685 IDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGC 744

Query: 499 APPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQ 557
           +P      +L D   + G    +L+    + +K        +  +IN   A G L +A 
Sbjct: 745 SPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLINHCCAAGLLDEAH 803



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/329 (21%), Positives = 131/329 (39%), Gaps = 24/329 (7%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           +L +E F  +    +++I    + +   +A   L +M  N  +P++VT   L+  + K  
Sbjct: 261 MLEKEDFNLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKK 320

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
                K     + + G  P+  ++NS++  Y NAG       L + M T G       Y 
Sbjct: 321 QFGWCKRIINMMMTEGCNPNPSLFNSLVHGYCNAGDYAYAYKLFNRMTTCGSPPGYVAYN 380

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE-----SCTL-------LVEAYGQAGDPD 414
             +      G + G  ++ N   ++  +   E     SC L               G  +
Sbjct: 381 IFI------GSICGQEELPNAELLDLVEKVYEEMLAASCVLNKVNTANFSRCLCGVGKFE 434

Query: 415 QARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
           +A      M+R G  PD      +I    +   ++K+  L  E+++ G  P   TYT+L+
Sbjct: 435 KAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYTILI 494

Query: 475 DWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALG-FLEAKKE 533
           D   +  LI +A     ++  +G +P      +L   Y ++   K+ +QA   F      
Sbjct: 495 DSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKS---KQLIQAHDIFHRMVDA 551

Query: 534 QMGPD--DFERIINGLLAGGFLQDAQRVH 560
              P+   +  +I+GL   G +Q A  V+
Sbjct: 552 ACYPNAVTYSALIDGLCKAGEIQKACEVY 580



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 64/274 (23%), Positives = 107/274 (39%), Gaps = 40/274 (14%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y  LID   K   + DA  +L  M   G  P+ +    L+  + K G +D A+E F
Sbjct: 607 NVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVF 666

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G+ P    Y S+I      G+  L M ++  M+      +   Y A++   ++ 
Sbjct: 667 LRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKV 726

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G++  A  + ++M  +   P + + T L++  G+ G                        
Sbjct: 727 GEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKA---------------------- 764

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
                        D +L L  ++   G  P   TY VL++      L++EA  LL ++  
Sbjct: 765 -------------DASLKLFKQMNSKGCAPNYVTYRVLINHCCAAGLLDEAHLLLDEMKH 811

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLE 529
                P  +Q   C   A  G  KK + +LG LE
Sbjct: 812 --THWPKHLQGYHC---AVQGFSKKFIASLGLLE 840



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 81/381 (21%), Positives = 140/381 (36%), Gaps = 57/381 (14%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y  L+    K+      +RI+  M   G  P+      LVH Y  AG+   A + F
Sbjct: 305 NVVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYCNAGDYAYAYKLF 364

Query: 316 ESLRSHGFQPDKKVYN-------------------------------SMIMAYVNA---- 340
             + + G  P    YN                               S ++  VN     
Sbjct: 365 NRMTTCGSPPGYVAYNIFIGSICGQEELPNAELLDLVEKVYEEMLAASCVLNKVNTANFS 424

Query: 341 ------GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
                 G+ +    ++  M+  G       Y  ++    Q   V  +  +   M+     
Sbjct: 425 RCLCGVGKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVN 484

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P + + T+L++++ +AG  +QARS FD M  +G  P+     +++ AY K   L +A ++
Sbjct: 485 PDVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDI 544

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEA----EQLLGKISELGE------------ 498
              +      P   TY+ L+D L +   I +A    E+L+G    +              
Sbjct: 545 FHRMVDAACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTI 604

Query: 499 APPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQR 558
           AP      +L D   +A     A + L  + A   +     ++ +I+G    G + +AQ 
Sbjct: 605 APNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQE 664

Query: 559 VHGLMEAQGFAASERLKVALI 579
           V   M   G+  S     +LI
Sbjct: 665 VFLRMTKCGYLPSVHTYTSLI 685



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 76/379 (20%), Positives = 136/379 (35%), Gaps = 64/379 (16%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L +  ++ +   Y+ L+   A    +E   R+ K+M+ +G   D  T         K G 
Sbjct: 195 LKDFGYRPSAVTYNALVQVLASAGQVEMGFRVQKEMSASGFCMDRSTIGYFAQALCKVG- 253

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
             R  +A   L    F  D  +   MI   + A      MS +  M  +    +   Y  
Sbjct: 254 --RWADALNMLEKEDFNLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSCIPNVVTYRT 311

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           LL  F +        +I N+M  E   P       LV  Y  AGD   A   F+ M   G
Sbjct: 312 LLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYCNAGDYAYAYKLFNRMTTCG 371

Query: 428 HKPD--------------------------DRCTASMIAAYGKKNLLD------------ 449
             P                           ++    M+AA    N ++            
Sbjct: 372 SPPGYVAYNIFIGSICGQEELPNAELLDLVEKVYEEMLAASCVLNKVNTANFSRCLCGVG 431

Query: 450 ---KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQV 506
              KA  +L E+ + GF P  +TYT ++ +L + + + ++  L  ++   G  P      
Sbjct: 432 KFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYT 491

Query: 507 SLCDMYARAGIEKKA------LQALG--------------FLEAKKEQMGPDDFERIING 546
            L D + +AG+ ++A      ++++G              +L++K+     D F R+++ 
Sbjct: 492 ILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDA 551

Query: 547 LLAGGFLQDAQRVHGLMEA 565
                 +  +  + GL +A
Sbjct: 552 ACYPNAVTYSALIDGLCKA 570



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 112/274 (40%), Gaps = 42/274 (15%)

Query: 220 PSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAER 278
           PS   + +L+DR+ ++    L  KV   +L++ S   NV  Y+ +ID  +K   +E A  
Sbjct: 676 PSVHTYTSLIDRMFKDGRLDLAMKVLSEMLND-SCNPNVVTYTAMIDGLSKVGEIEKALN 734

Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338
           +L  M E G  P++VT T L+    K G  D + + F+ + S G  P+   Y  +I    
Sbjct: 735 LLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLINHCC 794

Query: 339 NAGQPKLGMSLVDMM--------------ITSGIER-------------SEE------IY 365
            AG       L+D M                 G  +             S E      +Y
Sbjct: 795 AAGLLDEAHLLLDEMKHTHWPKHLQGYHCAVQGFSKKFIASLGLLEEMESHETVPIAPVY 854

Query: 366 LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL-----LVEAYGQAGDPDQARSNF 420
             L+ SF++ G +  A ++     + E   +L   +      L++A   A   ++A + +
Sbjct: 855 GMLIDSFSKAGRLETALELHK--ELVEVSSSLNMTSTGMYASLIQALCLASQVEEAFTLY 912

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
             M R G  PD     S++    + N  D+AL L
Sbjct: 913 TEMTRKGIVPDLIVFVSLVKGLIEVNKWDEALQL 946



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 106/247 (42%), Gaps = 11/247 (4%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENG--IVPDIVTSTVLVHMYSKAGNLDRAKEAFES 317
           Y  L +    E+    AER+L+++ E+   ++  ++   VLV    + G  D A E    
Sbjct: 137 YDALAEILGFEDPARTAERLLREIGEDDREVLRRLLN--VLVRRCCRHGLWDEALEELGR 194

Query: 318 LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG--IERSEEIYLALLRSFAQC 375
           L+  G++P    YN+++    +AGQ ++G  +   M  SG  ++RS   Y A     A C
Sbjct: 195 LKDFGYRPSAVTYNALVQVLASAGQVEMGFRVQKEMSASGFCMDRSTIGYFAQ----ALC 250

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
              R A  + N++  E+F      CT ++    +A   ++A S    M      P+    
Sbjct: 251 KVGRWADAL-NMLEKEDFNLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSCIPNVVTY 309

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++++ + KK        ++  +  +G  P P+ +  LV           A +L  +++ 
Sbjct: 310 RTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYCNAGDYAYAYKLFNRMTT 369

Query: 496 LGEAPPF 502
            G  P +
Sbjct: 370 CGSPPGY 376


>gi|358344944|ref|XP_003636545.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502480|gb|AES83683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1280

 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 127/314 (40%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
            TNV  YS +ID   K+  + DA  +  +M    I P +VT + L++ +   G    A  
Sbjct: 190 NTNVVMYSTIIDGLCKDKLVTDAYGLYSEMIVKRIPPTVVTFSSLIYGFCIVGKFKDAFR 249

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            F  +      PD   +N ++ A    G+ K   +++ +M+  G+E +   Y  L+  + 
Sbjct: 250 LFNEMVMKNINPDAYTFNILVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYC 309

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
              +V  A  + +I+      P   S  +++  + +    D+A   F  M   G  P   
Sbjct: 310 LVNEVGKAKHVLSIISRMRVAPNSRSYNIMINGFCKIKMVDEALCLFHEMCCRGIAPHKV 369

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
              S+I    K   +  A  L+ E+  +       TY  L+D   + Q +++A  L+ KI
Sbjct: 370 TYNSLIDGLCKAGRIPYAWELVDEMHNNCIPADIVTYNSLIDVFCKNQHVDKAIALVKKI 429

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFL 553
            E G  P       L D   + G  K A      L  K   +    +  +INGL   G  
Sbjct: 430 KEHGIQPNMCTYNILIDGLCKGGQLKNAQDVFQDLLIKGYNVNAWTYNIMINGLCKEGLF 489

Query: 554 QDAQRVHGLMEAQG 567
            +A+ +   ME  G
Sbjct: 490 DEAEVLLSKMEDNG 503



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 108/244 (44%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           V+ +E  +  V  Y+ L+D +   N +  A+ +L  ++   + P+  +  ++++ + K  
Sbjct: 288 VMMKEGVEPTVVTYNTLMDGYCLVNEVGKAKHVLSIISRMRVAPNSRSYNIMINGFCKIK 347

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            +D A   F  +   G  P K  YNS+I     AG+      LVD M  + I      Y 
Sbjct: 348 MVDEALCLFHEMCCRGIAPHKVTYNSLIDGLCKAGRIPYAWELVDEMHNNCIPADIVTYN 407

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           +L+  F +   V  A  +   ++    QP + +  +L++   + G    A+  F  ++  
Sbjct: 408 SLIDVFCKNQHVDKAIALVKKIKEHGIQPNMCTYNILIDGLCKGGQLKNAQDVFQDLLIK 467

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G+  +      MI    K+ L D+A  LL ++E +G  P   TY  ++  L       +A
Sbjct: 468 GYNVNAWTYNIMINGLCKEGLFDEAEVLLSKMEDNGIIPDAVTYETIIQALFHKDENEKA 527

Query: 487 EQLL 490
           ++LL
Sbjct: 528 QKLL 531



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 59/293 (20%), Positives = 119/293 (40%), Gaps = 25/293 (8%)

Query: 282 KMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF---------------ESLRSH----- 321
           +M   G+ PD+ T ++L++ Y   G +  A   F               E+L  H     
Sbjct: 92  QMESKGVKPDLFTLSILINCYCHLGQMTFAFSVFAKILKMGLCLNGKVNEALLFHDHVLA 151

Query: 322 -GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRG 380
            GF  +   Y  +I      GQ +  + ++  +    +  +  +Y  ++    +   V  
Sbjct: 152 LGFHLNHVTYGILINGLCKMGQTRAALQVLRQIEGKLVNTNVVMYSTIIDGLCKDKLVTD 211

Query: 381 AGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIA 440
           A  + + M ++   PT+ + + L+  +   G    A   F+ M+     PD      ++ 
Sbjct: 212 AYGLYSEMIVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKNINPDAYTFNILVD 271

Query: 441 AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
           A  K+  + +A N++  + K+G EP   TY  L+D    +  + +A+ +L  IS +  AP
Sbjct: 272 ALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGKAKHVLSIISRMRVAP 331

Query: 501 PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGG 551
             +    + + + +  +  +AL    F E     + P    +  +I+GL   G
Sbjct: 332 NSRSYNIMINGFCKIKMVDEALCL--FHEMCCRGIAPHKVTYNSLIDGLCKAG 382


>gi|240254191|ref|NP_174467.4| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
 gi|357528959|sp|Q9C6S6.2|PPR67_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g31840
 gi|332193282|gb|AEE31403.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 840

 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 77/344 (22%), Positives = 152/344 (44%), Gaps = 7/344 (2%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E  F+  +   +K++   + +  +E A R+L  + + G  P++VT   L++ + K G +D
Sbjct: 245 ERGFRVGIVSCNKVLKGLSVDQ-IEVASRLLSLVLDCGPAPNVVTFCTLINGFCKRGEMD 303

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
           RA + F+ +   G +PD   Y+++I  Y  AG   +G  L    +  G++    ++ + +
Sbjct: 304 RAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTI 363

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
             + + GD+  A  +   M  +   P + + T+L++   Q G   +A   +  +++ G +
Sbjct: 364 DVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGME 423

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           P     +S+I  + K   L     L  ++ K G+ P    Y VLVD L +  L+  A + 
Sbjct: 424 PSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRF 483

Query: 490 LGKISELGEAPPFKIQV--SLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
              +  LG++    + V  SL D + R     +AL+    +     +     F  ++   
Sbjct: 484 --SVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVS 541

Query: 548 LAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQPT 591
           +  G L++A  +   M   G          LI +  F +  +PT
Sbjct: 542 IMEGRLEEALFLFFRMFKMGLEPDALAYCTLIDA--FCKHMKPT 583



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 80/361 (22%), Positives = 156/361 (43%), Gaps = 4/361 (1%)

Query: 220 PSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERI 279
           P  + +  L+D L +Q   L+     + +  +S + NV  ++ LID   + N  ++A ++
Sbjct: 459 PDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKV 518

Query: 280 LKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339
            + M   GI PD+ T T ++ +    G L+ A   F  +   G +PD   Y ++I A+  
Sbjct: 519 FRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYCTLIDAFCK 578

Query: 340 AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLES 399
             +P +G+ L D+M  + I     +   ++    +C  +  A +  N +   + +P + +
Sbjct: 579 HMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVT 638

Query: 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELE 459
              ++  Y      D+A   F+ +      P+      +I    K N +D A+ +   + 
Sbjct: 639 YNTMICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILIHVLCKNNDMDGAIRMFSIMA 698

Query: 460 KDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEK 519
           + G +P   TY  L+DW  +   I  + +L  ++ E G +P       + D   + G   
Sbjct: 699 EKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEKGISPSIVSYSIIIDGLCKRGRVD 758

Query: 520 KALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVA 577
           +A     F +A   ++ PD   +  +I G    G L +A  ++  M   G    + L+ A
Sbjct: 759 EATNI--FHQAIDAKLLPDVVAYAILIRGYCKVGRLVEAALLYEHMLRNGVKPDDLLQRA 816

Query: 578 L 578
           L
Sbjct: 817 L 817



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/251 (20%), Positives = 106/251 (42%), Gaps = 1/251 (0%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           +    NV  Y+ LI    ++  + +A  +  ++ + G+ P IVT + L+  + K GNL  
Sbjct: 385 QGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRS 444

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
               +E +   G+ PD  +Y  ++      G     M     M+   I  +  ++ +L+ 
Sbjct: 445 GFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLID 504

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
            + +      A ++  +M I   +P + + T ++      G  ++A   F  M ++G +P
Sbjct: 505 GWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEP 564

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           D     ++I A+ K       L L   ++++      A   V++  L +   I +A +  
Sbjct: 565 DALAYCTLIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFF 624

Query: 491 GKISELGEAPP 501
             + E G+  P
Sbjct: 625 NNLIE-GKMEP 634


>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
 gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
          Length = 552

 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 124/288 (43%), Gaps = 11/288 (3%)

Query: 219 QPSRIDWINLLDRLR-----EQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCL 273
           +P+ + +  L+D L      ++  QL  K+ EL       + N   YS ++D   K   +
Sbjct: 240 RPNVVTYSTLIDGLSKMAKMDEALQLLAKMVEL-----GCRANTVTYSTVVDGLLKVGRM 294

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           EDA  +L++M + G +PD VT   L+  + K   L  A      +   GF P    Y ++
Sbjct: 295 EDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTL 354

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGA-GQITNIMRIEE 392
                 +G+    + ++D M   G   +   Y +++    + G V  A G    + R E 
Sbjct: 355 CHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEV 414

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P + + + L++   +AG  D+A    + MIR G  PD    + +I        +D  L
Sbjct: 415 VAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGL 474

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
            L   + + G  P   TY  LVD L R   ++EA  L  ++   G +P
Sbjct: 475 ELFRGMAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRSDGLSP 522



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/309 (22%), Positives = 138/309 (44%), Gaps = 8/309 (2%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F+  V  YS LID   +++ ++   ++L++M   G  P+ VT   LV+     G   R+K
Sbjct: 97  FRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQG---RSK 153

Query: 313 EAF---ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVD--MMITSGIERSEEIYLA 367
           EAF   E + ++G  P+   +  +I      G+ +    +VD   MI SG+      + +
Sbjct: 154 EAFSLLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNS 213

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           +L    +   +  A  +         +P + + + L++   +    D+A      M+ LG
Sbjct: 214 VLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELG 273

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            + +    ++++    K   ++ A+ +L ++   G  P   TY  L+D   + Q + EA 
Sbjct: 274 CRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAV 333

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
            LL ++ E G  P      +LC    R+G   +A++ L ++ A+        +  I++GL
Sbjct: 334 GLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGL 393

Query: 548 LAGGFLQDA 556
              G + +A
Sbjct: 394 CKAGRVTEA 402



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 127/284 (44%), Gaps = 6/284 (2%)

Query: 233 REQNTQLYFKVA-ELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPD 291
           +E   +  F+V  E+ + E     +V  ++ ++D   KE  + DA  + K+  E G  P+
Sbjct: 183 KEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPN 242

Query: 292 IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVD 351
           +VT + L+   SK   +D A +    +   G + +   Y++++   +  G+ +  + ++ 
Sbjct: 243 VVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLR 302

Query: 352 MMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAG 411
            M  +G       Y  L+  F +   +R A  +   M    F P++ + T L     ++G
Sbjct: 303 QMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSG 362

Query: 412 DPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD-GFEPGPATY 470
             D+A    DYM   G  P+    +S++    K   + +AL    ++ +D    P    Y
Sbjct: 363 RFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAY 422

Query: 471 TVLVDWLGRLQLINEAEQLLGKISELGEAP---PFKIQVS-LCD 510
           + L+D L +   I+EA + L ++   G  P    F I ++ LCD
Sbjct: 423 SALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCD 466



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 95/219 (43%), Gaps = 1/219 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LID   K   L +A  +L++M E G  P +VT T L H   ++G  D A E  + + 
Sbjct: 316 YNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMA 375

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI-YLALLRSFAQCGDV 378
           + G  P+   Y+S++     AG+    +   + M    +     I Y AL+    + G +
Sbjct: 376 ARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKI 435

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             A +    M      P + + ++L+     AG  D     F  M   G  PD    A++
Sbjct: 436 DEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFRGMAERGCVPDMVTYATL 495

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
           +    + + +D+A +L  ++  DG  P  +T   ++  L
Sbjct: 496 VDRLCRASRVDEAFDLFQQMRSDGLSPDRSTRRTMIHGL 534



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 113/253 (44%), Gaps = 3/253 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + +++   +V  Y  LID   K+  +++A  + ++    G  P +VT   ++    K G 
Sbjct: 21  MVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGR 80

Query: 308 LDRAKEAFESLRSH-GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           ++ A   ++ +  H GF+P    Y+++I       +   G  L++ M   G   +   Y 
Sbjct: 81  IENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYN 140

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD--YMI 424
            L+ +    G  + A  +   M      P L +  L+++   + G+ + A    D  +MI
Sbjct: 141 TLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMI 200

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
             G  PD     S++    K+  +  A N+     + G  P   TY+ L+D L ++  ++
Sbjct: 201 ESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMD 260

Query: 485 EAEQLLGKISELG 497
           EA QLL K+ ELG
Sbjct: 261 EALQLLAKMVELG 273



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 132/329 (40%), Gaps = 4/329 (1%)

Query: 263 LIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG 322
           +ID   K   ++ A  + K+M +  I PD+VT   L+    K   +  A + FE  R+ G
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKG 60

Query: 323 FQPDKKVYNSMIMAYVNAGQPKLGMSLV-DMMITSGIERSEEIYLALLRSFAQCGDVRGA 381
             P    YN+MI      G+ +  ++L  DM I  G   +   Y  L+    +  +V   
Sbjct: 61  CHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKG 120

Query: 382 GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441
            ++   M      P   +   LV A    G   +A S  + M   G  P+      +I  
Sbjct: 121 CKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKG 180

Query: 442 YGKKNLLDKALNLLLELE--KDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             K+  ++ A  ++ E+   + G  P   T+  ++D L + Q I +A  +  +  E G  
Sbjct: 181 LCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCR 240

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P      +L D  ++     +ALQ L  +     +     +  +++GLL  G ++DA  V
Sbjct: 241 PNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVV 300

Query: 560 HGLMEAQGFAASERLKVALISSQTFNRQR 588
              M   G          LI    F RQR
Sbjct: 301 LRQMRDAGCLPDAVTYNTLIDG-FFKRQR 328



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 40/79 (50%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  +S LI+       ++    + + M E G VPD+VT   LV    +A  +D A + F
Sbjct: 453 DVVTFSILINGLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLCRASRVDEAFDLF 512

Query: 316 ESLRSHGFQPDKKVYNSMI 334
           + +RS G  PD+    +MI
Sbjct: 513 QQMRSDGLSPDRSTRRTMI 531


>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
 gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
 gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
 gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
          Length = 683

 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 122/266 (45%), Gaps = 6/266 (2%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  YS +I+   KE  L+       +M +  I P++VT   ++    KA  +D+A E  
Sbjct: 87  DVVSYSTVINGFFKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVL 146

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
            ++   G  PD   YNS++  + ++GQPK  +  +  M + G+E     Y +L+    + 
Sbjct: 147 TTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKN 206

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G    A +I + M     +P + +   L++ Y   G   +     D M+R G  P+    
Sbjct: 207 GRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVF 266

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
           + ++ AY K+  +++A+ +  ++ + G  P   TY  ++  L +   + +A     ++ +
Sbjct: 267 SILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMID 326

Query: 496 LGEAPPFKIQVSL------CDMYARA 515
            G +P   +  SL      C+ + RA
Sbjct: 327 EGLSPGNIVYNSLIHGLCTCNKWERA 352



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 119/238 (50%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           +S L+ A+AK+  +E+A  +  KM + G+ P+ VT   ++ +  K+G ++ A   FE + 
Sbjct: 266 FSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMI 325

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P   VYNS+I       + +    L+  M+  GI  +   + +++ S  + G V 
Sbjct: 326 DEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVI 385

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            + ++ ++M     +P + + + L++ Y  AG  D+A      M+ +G KPD    +++I
Sbjct: 386 ESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLI 445

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
             Y K + +  AL L  E+E  G  P   TY +++  L + +    A++L   I++ G
Sbjct: 446 NGYCKISRMKDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITKSG 503



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 139/312 (44%), Gaps = 4/312 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ ++         ++A   LKKM  +G+ PD+VT   L+    K G    A++ F+S+ 
Sbjct: 161 YNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMT 220

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +P+   Y +++  Y   G       L+D+M+ +GI  +  ++  L+ ++A+   V 
Sbjct: 221 KRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVE 280

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  + + MR +   P   +   ++    ++G  + A   F+ MI  G  P +    S+I
Sbjct: 281 EAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLI 340

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
                 N  ++A  L+LE+   G       +  ++D   +   + E+E+L   +  +G  
Sbjct: 341 HGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVK 400

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQ 557
           P      +L D Y  AG   +A + L  + +    M PD   +  +ING      ++DA 
Sbjct: 401 PDIITYSTLIDGYCLAGKMDEATKLLASMVSVG--MKPDCVTYSTLINGYCKISRMKDAL 458

Query: 558 RVHGLMEAQGFA 569
            +   ME+ G +
Sbjct: 459 VLFREMESSGVS 470



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/296 (22%), Positives = 136/296 (45%), Gaps = 6/296 (2%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENG--IVPDIVTSTVLVHMYSKAGNLDRAKE 313
           +V  Y+ L++    EN  ++A  +L  M ++G    PD+V+ + +++ + K G+LD+   
Sbjct: 50  DVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDKTYS 109

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            +  +      P+   YNS+I A   A      M ++  M+ SG+      Y +++  F 
Sbjct: 110 TYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFC 169

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
             G  + A      MR +  +P + +   L++   + G   +AR  FD M + G KP+  
Sbjct: 170 SSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEIT 229

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
              +++  Y  K  L +   LL  + ++G  P    +++LV    + + + EA  +  K+
Sbjct: 230 TYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKM 289

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGL 547
            + G  P      ++  +  ++G  + A+  L F +   E + P +  +  +I+GL
Sbjct: 290 RQQGLNPNAVTYGAVIGILCKSGRVEDAM--LYFEQMIDEGLSPGNIVYNSLIHGL 343



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 60/285 (21%), Positives = 129/285 (45%), Gaps = 4/285 (1%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           ++P  + + +L+D L +       +     +++   +  +  Y  L+  +A +  L +  
Sbjct: 189 VEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMH 248

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
            +L  M  NGI P+    ++LV  Y+K   ++ A   F  +R  G  P+   Y ++I   
Sbjct: 249 GLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGIL 308

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
             +G+ +  M   + MI  G+     +Y +L+     C     A ++  I+ + +    L
Sbjct: 309 CKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEEL--ILEMLDRGICL 366

Query: 398 ESCTL--LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
            +     +++++ + G   ++   FD M+R+G KPD    +++I  Y     +D+A  LL
Sbjct: 367 NTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLL 426

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
             +   G +P   TY+ L++   ++  + +A  L  ++   G +P
Sbjct: 427 ASMVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSP 471



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 138/322 (42%), Gaps = 8/322 (2%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           ++    NV  Y+ +I A  K   ++ A  +L  M ++G++PD +T   +VH +  +G   
Sbjct: 116 DQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPK 175

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A    + +RS G +PD   YNS++      G+      + D M   G++     Y  LL
Sbjct: 176 EAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLL 235

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
           + +A  G +     + ++M      P     ++LV AY +    ++A   F  M + G  
Sbjct: 236 QGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLN 295

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           P+     ++I    K   ++ A+    ++  +G  PG   Y  L+  L        AE+L
Sbjct: 296 PNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEEL 355

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAG--IEKKALQALGFLEAKKEQMGPD--DFERIIN 545
           + ++ + G         S+ D + + G  IE + L    F    +  + PD   +  +I+
Sbjct: 356 ILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKL----FDLMVRIGVKPDIITYSTLID 411

Query: 546 GLLAGGFLQDAQRVHGLMEAQG 567
           G    G + +A ++   M + G
Sbjct: 412 GYCLAGKMDEATKLLASMVSVG 433


>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 73/331 (22%), Positives = 154/331 (46%), Gaps = 5/331 (1%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIV-PDIVTSTVLVHMYSKAGNLDRA 311
           F  +   Y  LI+   K      A ++L+K+    +V PD++  T ++  + K   +  A
Sbjct: 154 FHLDQVSYGTLINGLCKSGETRAALQLLRKIEGLLLVRPDVIMYTAIIDSFCKDKLVIDA 213

Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
            + +  +      P+   +NS+I  +   GQ K  + L++ M  + +  +   +  L+  
Sbjct: 214 YDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDG 273

Query: 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
             + G+V+ A  + ++M  +  +P + + T L++ Y    + ++A+  F+ +   G  P+
Sbjct: 274 LCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPN 333

Query: 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
               + MI    K  ++D+A+ L  E+      P   TY+ L+D L +   I++   L+ 
Sbjct: 334 VHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDLID 393

Query: 492 KISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLA 549
           +I+  G+        SL +   +     KA+  L   + K E + PD   +  +++GL  
Sbjct: 394 EINNRGQPANIITYNSLLNGLCKNHQVDKAIALLT--KMKDEGIQPDMSTYTTLVDGLCK 451

Query: 550 GGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
            G L+DAQR++  +  +G+  + R+   +I+
Sbjct: 452 NGRLKDAQRIYQDLLCKGYPLNIRMYTVMIN 482



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 130/308 (42%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +ID+  K+  + DA  +  +M    I P++VT   L++ +   G L  A      + 
Sbjct: 197 YTAIIDSFCKDKLVIDAYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMS 256

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
            +   P+   +N +I      G+ K   S++ +MI  G+E +   Y +L+  +    +V 
Sbjct: 257 LNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVN 316

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  + N + +    P + S ++++    +    D+A   F  M      P+    +S+I
Sbjct: 317 KAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLI 376

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
               K   +    +L+ E+   G      TY  L++ L +   +++A  LL K+ + G  
Sbjct: 377 DGLCKSGRISDVWDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQ 436

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P      +L D   + G  K A +    L  K   +    +  +INGL   GF  +A  +
Sbjct: 437 PDMSTYTTLVDGLCKNGRLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALSL 496

Query: 560 HGLMEAQG 567
              ME  G
Sbjct: 497 LSQMEDNG 504



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 106/231 (45%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           V+ ++  + NV  Y+ L+D +     +  A+ +   ++  G+ P++ + +V+++   K  
Sbjct: 289 VMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPNVHSYSVMINGLCKNK 348

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            +D A + F+ +      P+   Y+S+I     +G+      L+D +   G   +   Y 
Sbjct: 349 MVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDLIDEINNRGQPANIITYN 408

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           +LL    +   V  A  +   M+ E  QP + + T LV+   + G    A+  +  ++  
Sbjct: 409 SLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGLCKNGRLKDAQRIYQDLLCK 468

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
           G+  + R    MI    K+   D+AL+LL ++E +G  P   TY  L+  L
Sbjct: 469 GYPLNIRMYTVMINGLCKEGFFDEALSLLSQMEDNGCMPDAVTYETLISAL 519



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/326 (20%), Positives = 135/326 (41%), Gaps = 5/326 (1%)

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           + +++K++ +  K N  + A    ++M   GI P++ T  +L++ +S    L+ A     
Sbjct: 53  IFEFNKILSSLVKMNHFKIAISFSQQMELKGIQPEMFTFNILINCFSHLCQLNFAFSMVA 112

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
            +   G+QPD    N+++      G+ K  ++  D +I       +  Y  L+    + G
Sbjct: 113 KILKLGYQPDTVTVNTLLRGLCLNGKVKEALNFHDHVIRKRFHLDQVSYGTLINGLCKSG 172

Query: 377 DVRGAGQITNIMRIEEF---QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           + R A Q+  + +IE     +P +   T +++++ +      A   +  MI     P+  
Sbjct: 173 ETRAALQL--LRKIEGLLLVRPDVIMYTAIIDSFCKDKLVIDAYDLYSEMIVKKIYPNVV 230

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
              S+I  +     L +A+ LL E+  +   P   T+ +L+D L +   + +A  +L  +
Sbjct: 231 TFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVM 290

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFL 553
            + G  P      SL D Y       KA      +  +        +  +INGL     +
Sbjct: 291 IKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMV 350

Query: 554 QDAQRVHGLMEAQGFAASERLKVALI 579
            +A ++   M  +    +     +LI
Sbjct: 351 DEAVKLFKEMHLKNMTPNTVTYSSLI 376



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 118/265 (44%), Gaps = 16/265 (6%)

Query: 202 EKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQT------ 255
           E ++  S L    K+ ++P+ + + +L+D         YF V E+  ++  F T      
Sbjct: 279 EVKKATSVLSVMIKQGVEPNVVTYTSLMDG--------YFLVKEVNKAKHVFNTISLRGV 330

Query: 256 --NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
             NV  YS +I+   K   +++A ++ K+M+   + P+ VT + L+    K+G +    +
Sbjct: 331 TPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWD 390

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
             + + + G   +   YNS++       Q    ++L+  M   GI+     Y  L+    
Sbjct: 391 LIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGLC 450

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           + G ++ A +I   +  + +   +   T+++    + G  D+A S    M   G  PD  
Sbjct: 451 KNGRLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALSLLSQMEDNGCMPDAV 510

Query: 434 CTASMIAAYGKKNLLDKALNLLLEL 458
              ++I+A  K N   KA+ LL E+
Sbjct: 511 TYETLISALFKNNKNGKAVKLLREM 535



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 6/151 (3%)

Query: 219 QPSRIDWINLLDRLREQNTQLYFKVAELV-LSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           QP+ I   N L     +N Q+   +A L  + +E  Q ++  Y+ L+D   K   L+DA+
Sbjct: 400 QPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGLCKNGRLKDAQ 459

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
           RI + +   G   +I   TV+++   K G  D A      +  +G  PD   Y ++I A 
Sbjct: 460 RIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALSLLSQMEDNGCMPDAVTYETLISAL 519

Query: 338 VNAGQPKLGMSLVDMMI-----TSGIERSEE 363
               +    + L+  MI      SG E+S E
Sbjct: 520 FKNNKNGKAVKLLREMIARESDCSGKEQSRE 550


>gi|255660844|gb|ACU25591.1| pentatricopeptide repeat-containing protein [Rhaphithamnus
           venustus]
          Length = 418

 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 119/262 (45%), Gaps = 8/262 (3%)

Query: 211 LAEWKELLQPSRIDWINLLD---RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAH 267
           + +W   L+PS + +  L+    RL + +     K A   +     Q +V  YS LI+  
Sbjct: 162 ITKWG--LRPSVVSFNTLMSGYIRLGDLDEGFRLKSA---MHASGVQPDVYTYSVLINGL 216

Query: 268 AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK 327
            KE+ +++A  +  +M +NG+VP+ VT T L+  + K G +D A E ++ L S GF PD 
Sbjct: 217 CKESKMDEANELFNEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQLLSQGFSPDL 276

Query: 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNI 387
             YN++I      G  K    L+D M    ++  +  Y  L+    + GD+  A +    
Sbjct: 277 ITYNTLIFGLCKKGDLKQARDLIDEMSMKELKPDKITYTTLIDGSCKEGDLETAFEYRKR 336

Query: 388 MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447
           M  E  +    + T L+    Q G    A      M+ +G KPD+     +I  + KK  
Sbjct: 337 MIKENIRLDDVAYTALISGLCQEGRSVDAEKMLRGMLSVGLKPDNGTYTMIINEFCKKGD 396

Query: 448 LDKALNLLLELEKDGFEPGPAT 469
           +     LL E+ +DG  P   T
Sbjct: 397 VKTGSKLLKEMXRDGHVPCVVT 418



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/298 (20%), Positives = 135/298 (45%), Gaps = 18/298 (6%)

Query: 214 WKELLQ---PSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQT--------NVRDYSK 262
           +KE+L+   P+ + + N+L          + K  E+ L++  F          +V  ++ 
Sbjct: 124 YKEILECGYPASLYFFNIL-------MHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNT 176

Query: 263 LIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG 322
           L+  + +   L++  R+   M+ +G+ PD+ T +VL++   K   +D A E F  +  +G
Sbjct: 177 LMSGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFNEMLDNG 236

Query: 323 FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAG 382
             P+   + ++I  +   G+  L M +   +++ G       Y  L+    + GD++ A 
Sbjct: 237 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQLLSQGFSPDLITYNTLIFGLCKKGDLKQAR 296

Query: 383 QITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAY 442
            + + M ++E +P   + T L++   + GD + A      MI+   + DD    ++I+  
Sbjct: 297 DLIDEMSMKELKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGL 356

Query: 443 GKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
            ++     A  +L  +   G +P   TYT++++   +   +    +LL ++   G  P
Sbjct: 357 CQEGRSVDAEKMLRGMLSVGLKPDNGTYTMIINEFCKKGDVKTGSKLLKEMXRDGHVP 414



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 63/292 (21%), Positives = 119/292 (40%), Gaps = 4/292 (1%)

Query: 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV 350
           DI   + L+  Y ++G +  A E F   R H F         ++   +     KL     
Sbjct: 65  DIYVFSGLITAYLESGFIRDAIEFFRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFY 124

Query: 351 DMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410
             ++  G   S   +  L+  F + G++R A  + + +     +P++ S   L+  Y + 
Sbjct: 125 KEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMSGYIRL 184

Query: 411 GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATY 470
           GD D+       M   G +PD    + +I    K++ +D+A  L  E+  +G  P   T+
Sbjct: 185 GDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFNEMLDNGLVPNGVTF 244

Query: 471 TVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEA 530
           T L+D   +   ++ A ++  ++   G +P      +L     + G  K+A   +   E 
Sbjct: 245 TTLIDGHCKNGRVDLAMEIYKQLLSQGFSPDLITYNTLIFGLCKKGDLKQARDLID--EM 302

Query: 531 KKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
             +++ PD   +  +I+G    G L+ A      M  +     +    ALIS
Sbjct: 303 SMKELKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALIS 354


>gi|50878351|gb|AAT85126.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 920

 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 149/338 (44%), Gaps = 9/338 (2%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENG-IVPDIVTSTVLVHMYSKAG 306
           L  +    NV  Y+ L+  + K+  +E+AER++K+M E G IV D V   ++++ Y + G
Sbjct: 279 LQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRG 338

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            +D A      +R  G   +  VYN+MI      G+ +    ++  M   G+   +  Y 
Sbjct: 339 RMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYN 398

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+  + + G +R A ++  +M       T  +   L++ +      D A   +  M++ 
Sbjct: 399 TLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKR 458

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G  P++   ++++    K    ++ALNL  E    G      T+  +++ L ++  + EA
Sbjct: 459 GVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEA 518

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
           E+LL ++ EL   P      +L D Y + G     L     L  K E +G      + N 
Sbjct: 519 EELLDRMKELRCPPDSLTYRTLFDGYCKLG----QLGTATHLMNKMEHLGFAPSVEMFNS 574

Query: 547 LLAGGFL----QDAQRVHGLMEAQGFAASERLKVALIS 580
            + G F+         +H  M A+G + +     ALI+
Sbjct: 575 FITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIA 612



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 90/410 (21%), Positives = 164/410 (40%), Gaps = 9/410 (2%)

Query: 169 AEKIHERGEMILPEEPKPITGKCKLITDKILSLEKEEDPSPLLAEWKELLQ----PSRI- 223
           AE++      + P   +    + +L  D  L L +     P L    +LL       R  
Sbjct: 58  AERLLASSSPLTPALLQAALRRVRLDPDAALHLFRLAPSRPSLVSHAQLLHILARARRFH 117

Query: 224 DWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKM 283
           D   LL  L      L+  +AE+      F  +   +  L+ AHA    L  A  +   M
Sbjct: 118 DARALLSSLPPHAEPLFPHLAEVY---RDFTFSAVSFDLLLRAHADAGQLSSALNVFDGM 174

Query: 284 NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343
            + G  P + +   L++   ++G+   A   +  +R  G  PD+     M  AY   G+ 
Sbjct: 175 GKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQMRIAGVLPDEFTVAIMAKAYCRDGRV 234

Query: 344 KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403
              +  V+ M   G+E +   Y A++  +   G    A +I   ++ +   P + + TLL
Sbjct: 235 AQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLL 294

Query: 404 VEAYGQAGDPDQARSNFDYMIRLGH-KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           V+ Y + G  ++A      M   G    D+     MI  Y ++  +D A  +  E+   G
Sbjct: 295 VKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAG 354

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522
                  Y  +++ L +L  + E +++L ++ ++G  P      +L D Y R G  +KA 
Sbjct: 355 IHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAF 414

Query: 523 QALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572
           +    +           +  ++ G  +   + DA R+  LM  +G A +E
Sbjct: 415 EMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNE 464



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 103/252 (40%), Gaps = 13/252 (5%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +S      N+  Y  LI    KE  L +A  +  +M  NG+ P++   + L+  + K G 
Sbjct: 595 MSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGK 654

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMI--MAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
           +D A    + L +    P   +    I  +++V           VD +       +  ++
Sbjct: 655 VDEANLVLQKLVNIDMIPGCSISTIEIDKISHV-----------VDTIADGNPHSANVMW 703

Query: 366 LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
             ++    + G +  A  +   +R + F P   + + L+     +G  D+A S  D M+ 
Sbjct: 704 NVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLS 763

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
            G  P+     S+I    K   L +A+NL  +L+  G  P   TY  L+D   +     E
Sbjct: 764 AGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTE 823

Query: 486 AEQLLGKISELG 497
           A +L  K+ E G
Sbjct: 824 AFKLKQKMVEEG 835



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 16/165 (9%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L  + F  +   YS LI   A    +++A  +   M   G+ P+I+T   L++   K+G 
Sbjct: 726 LRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGK 785

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP----KL------------GMSLVD 351
           L RA   F  L+S G  P+   YN++I  Y   G+     KL             + L+D
Sbjct: 786 LSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGYMEEAIKLLD 845

Query: 352 MMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
            MI + ++ +   Y  L+  + + G++    ++ + M I    PT
Sbjct: 846 QMIENNVDPNYITYCTLIHGYIKSGNMEEISKLYDEMHIRGLLPT 890



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/267 (20%), Positives = 107/267 (40%), Gaps = 50/267 (18%)

Query: 234 EQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIV 293
            +   LYF++            NV   S L+    KE  +++A  +L+K+    ++P   
Sbjct: 621 HEACNLYFEMVN-----NGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCS 675

Query: 294 TST--------------------------VLVHMYSKAGNLDRAKEAFESLRSHGFQPDK 327
            ST                          V++    K+G +  AK  FESLR+  F PD 
Sbjct: 676 ISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDN 735

Query: 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNI 387
             Y+S+I     +G      SL D+M+++G+  +   Y +L+    + G +  A  + N 
Sbjct: 736 FTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNK 795

Query: 388 MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447
           ++ +   P   +   L++ Y + G   +A      M+  G+                   
Sbjct: 796 LQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGY------------------- 836

Query: 448 LDKALNLLLELEKDGFEPGPATYTVLV 474
           +++A+ LL ++ ++  +P   TY  L+
Sbjct: 837 MEEAIKLLDQMIENNVDPNYITYCTLI 863



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 74/346 (21%), Positives = 127/346 (36%), Gaps = 32/346 (9%)

Query: 215 KELLQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCL 273
           K  + P+ I    LLD L +   T+    + +  L+      NV  ++ +I+   K   +
Sbjct: 457 KRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLAR-GLAKNVITFNTVINGLCKIGRM 515

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
            +AE +L +M E    PD +T   L   Y K G L  A      +   GF P  +++NS 
Sbjct: 516 AEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSF 575

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           I  +  A Q      +   M   G+  +   Y AL+  + + G++  A  +   M     
Sbjct: 576 ITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGM 635

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS---------------- 437
            P +  C+ L+  + + G  D+A      ++ +   P   C+ S                
Sbjct: 636 NPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPG--CSISTIEIDKISHVVDTIAD 693

Query: 438 ------------MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
                       +I    K   +  A +L   L    F P   TY+ L+        I+E
Sbjct: 694 GNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDE 753

Query: 486 AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK 531
           A  L   +   G  P      SL     ++G   +A+     L++K
Sbjct: 754 AFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSK 799



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 60/318 (18%), Positives = 126/318 (39%), Gaps = 27/318 (8%)

Query: 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320
           S L+D   K    E A  + K+    G+  +++T   +++   K G +  A+E  + ++ 
Sbjct: 468 STLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKE 527

Query: 321 HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRG 380
               PD   Y ++   Y   GQ      L++ M   G   S E++ + +           
Sbjct: 528 LRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHK 587

Query: 381 AGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIA 440
              I + M      P L +   L+  + + G+  +A + +  M+  G  P+    +++++
Sbjct: 588 VNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMS 647

Query: 441 AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
            + K+  +D+A  +L +L      PG +  T+ +D +  +            +  + +  
Sbjct: 648 CFYKEGKVDEANLVLQKLVNIDMIPGCSISTIEIDKISHV------------VDTIADGN 695

Query: 501 PFKIQV-------SLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF--ERIINGLLAGG 551
           P    V        LC    R    K   ++L     + ++  PD+F    +I+G  A G
Sbjct: 696 PHSANVMWNVIIFGLCK-SGRIADAKSLFESL-----RNKRFLPDNFTYSSLIHGCAASG 749

Query: 552 FLQDAQRVHGLMEAQGFA 569
            + +A  +  +M + G  
Sbjct: 750 SIDEAFSLRDVMLSAGLT 767



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/290 (19%), Positives = 110/290 (37%), Gaps = 26/290 (8%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  L D + K   L  A  ++ KM   G  P +      +  +  A    +  +    + 
Sbjct: 537 YRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMS 596

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G  P+   Y ++I  +   G      +L   M+ +G+  +  I  AL+  F + G V 
Sbjct: 597 ARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVD 656

Query: 380 GAG----QITNI----------MRIEEFQPTLESC------------TLLVEAYGQAGDP 413
            A     ++ NI          + I++    +++              +++    ++G  
Sbjct: 657 EANLVLQKLVNIDMIPGCSISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRI 716

Query: 414 DQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVL 473
             A+S F+ +      PD+   +S+I        +D+A +L   +   G  P   TY  L
Sbjct: 717 ADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSL 776

Query: 474 VDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
           +  L +   ++ A  L  K+   G +P      +L D Y + G   +A +
Sbjct: 777 IYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFK 826



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/257 (18%), Positives = 101/257 (39%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LID + +E  +  A  + + M  NG+    +T   L+  +     +D A   +  + 
Sbjct: 397 YNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLML 456

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P++   ++++     AG+ +  ++L    +  G+ ++   +  ++    + G + 
Sbjct: 457 KRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMA 516

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++ + M+     P   +   L + Y + G    A    + M  LG  P      S I
Sbjct: 517 EAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFI 576

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             +       K  ++  E+   G  P   TY  L+    +   ++EA  L  ++   G  
Sbjct: 577 TGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMN 636

Query: 500 PPFKIQVSLCDMYARAG 516
           P   I  +L   + + G
Sbjct: 637 PNVFICSALMSCFYKEG 653



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 24/106 (22%), Positives = 51/106 (48%)

Query: 226 INLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNE 285
           +NL ++L+ +           ++ E   +    +  KL     +E  +E+A ++L +M E
Sbjct: 790 VNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGYMEEAIKLLDQMIE 849

Query: 286 NGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYN 331
           N + P+ +T   L+H Y K+GN++   + ++ +   G  P   + N
Sbjct: 850 NNVDPNYITYCTLIHGYIKSGNMEEISKLYDEMHIRGLLPTNWIGN 895


>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
 gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
          Length = 735

 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 79/344 (22%), Positives = 144/344 (41%), Gaps = 5/344 (1%)

Query: 242 KVAELV-----LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTST 296
           KV+E V     + E   Q +V  Y+ +++   +      A  +L+KM E  +  D+ T +
Sbjct: 173 KVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYS 232

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
            ++    + G +D A   F+ + + G +     YNS++     AG+   G  L+  M++ 
Sbjct: 233 TIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSR 292

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
            I  +   +  LL  F + G ++ A ++   M      P + +   L++ Y       +A
Sbjct: 293 EIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEA 352

Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476
            +  D M+R    PD     S+I  Y     +D  + +   + K G      TY++LV  
Sbjct: 353 NNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQG 412

Query: 477 LGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG 536
             +   I  AE+L  ++   G  P       L D     G  +KAL+    L+  K  +G
Sbjct: 413 FCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLG 472

Query: 537 PDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
              +  II G+  GG ++DA  +   +  +G   +      +IS
Sbjct: 473 IVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMIS 516



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 117/263 (44%), Gaps = 12/263 (4%)

Query: 218 LQPSRIDWINLLD------RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKEN 271
           + P+ I +  LLD      +L+E N +LY    E++        N+  Y+ L+D +  +N
Sbjct: 294 IVPNVITFNVLLDVFVKEGKLQEAN-ELY---KEMI--TRGISPNIITYNTLMDGYCMQN 347

Query: 272 CLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYN 331
            L +A  +L  M  N   PDIVT T L+  Y     +D   + F ++   G   +   Y+
Sbjct: 348 RLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYS 407

Query: 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391
            ++  +  +G+ KL   L   M++ G+      Y  LL      G +  A +I   ++  
Sbjct: 408 ILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKS 467

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
           +    +   T ++E   + G  + A + F  +   G KP+      MI+   KK  L +A
Sbjct: 468 KMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEA 527

Query: 452 LNLLLELEKDGFEPGPATYTVLV 474
             LL ++E+DG  P   TY  L+
Sbjct: 528 NILLRKMEEDGNAPNDCTYNTLI 550



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 108/245 (44%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  ++ L+D   KE  L++A  + K+M   GI P+I+T   L+  Y     L  A    
Sbjct: 297 NVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNML 356

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + +  +   PD   + S+I  Y    +   GM +   +   G+  +   Y  L++ F Q 
Sbjct: 357 DLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQS 416

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G ++ A ++   M      P + +  +L++     G  ++A   F+ + +          
Sbjct: 417 GKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMY 476

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I    K   ++ A NL   L   G +P   TYTV++  L +   ++EA  LL K+ E
Sbjct: 477 TTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEE 536

Query: 496 LGEAP 500
            G AP
Sbjct: 537 DGNAP 541



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/266 (19%), Positives = 121/266 (45%), Gaps = 12/266 (4%)

Query: 218 LQPSRIDWINLLD------RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKEN 271
           + P+ I +  L+D      RL E N  L   V            ++  ++ LI  +    
Sbjct: 329 ISPNIITYNTLMDGYCMQNRLSEANNMLDLMV------RNKCSPDIVTFTSLIKGYCMVK 382

Query: 272 CLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYN 331
            ++D  ++ + +++ G+V + VT ++LV  + ++G +  A+E F+ + SHG  PD   Y 
Sbjct: 383 RVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYG 442

Query: 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391
            ++    + G+ +  + + + +  S ++    +Y  ++    + G V  A  +   +  +
Sbjct: 443 ILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCK 502

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
             +P + + T+++    + G   +A      M   G+ P+D    ++I A+ +   L  +
Sbjct: 503 GVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTAS 562

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWL 477
             L+ E++  GF    ++  +++D L
Sbjct: 563 AKLIEEMKSCGFSADASSIKMVIDML 588



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 72/338 (21%), Positives = 133/338 (39%), Gaps = 24/338 (7%)

Query: 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318
           D+S+   A A+           K++  NGI  +I T  ++++ + +      A      +
Sbjct: 90  DFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKV 149

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
              G++PD   +N++I      G+    + LVD M+ +G +     Y +++    + GD 
Sbjct: 150 MKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDT 209

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             A  +   M     +  + + + ++++  + G  D A S F  M   G K       S+
Sbjct: 210 SLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSL 269

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL---GRLQLINEAEQLLGKISE 495
           +    K    +    LL ++      P   T+ VL+D     G+LQ   EA +L  ++  
Sbjct: 270 VRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQ---EANELYKEMIT 326

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFL 553
            G +P      +L D Y       +A   L  +   + +  PD   F  +I G      +
Sbjct: 327 RGISPNIITYNTLMDGYCMQNRLSEANNMLDLMV--RNKCSPDIVTFTSLIKGYCMVKRV 384

Query: 554 QDAQRV------HGLME--------AQGFAASERLKVA 577
            D  +V       GL+          QGF  S ++K+A
Sbjct: 385 DDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLA 422


>gi|147859909|emb|CAN83144.1| hypothetical protein VITISV_040783 [Vitis vinifera]
          Length = 724

 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 122/268 (45%), Gaps = 7/268 (2%)

Query: 263 LIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG 322
           +I A       E+AE I +++ E G++P       L+  Y K G+L  A+     +   G
Sbjct: 368 VITALGNAGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSG 427

Query: 323 FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAG 382
           F PD+  Y+ +I AY NAG+ +    ++  M  SG+  +  ++  +L S+   G  + + 
Sbjct: 428 FSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSF 487

Query: 383 QITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAY 442
           Q+   MR     P      ++++ +G+    D A + FD M   G +PD     ++I  +
Sbjct: 488 QVLREMRNSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCH 547

Query: 443 GKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPF 502
            K    +KA  L   +++ G  P   TY ++++  G  +   + + LLGK+   G     
Sbjct: 548 CKSGHHNKAEELFEAMQESGCSPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQG----- 602

Query: 503 KIQVSLCDMYARAGIEKKALQALGFLEA 530
              ++    Y   G+ ++A+ A   + A
Sbjct: 603 --LLANVVTYTTLGLSEQAINAFRVMRA 628



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 108/226 (47%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L E       R Y+ L+  + K   L+DAE I+ +M  +G  PD  T ++L+  Y+ AG 
Sbjct: 388 LKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAGR 447

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            + A+   + + + G +P+  V++ ++ +Y + G+ +    ++  M  SG+      Y  
Sbjct: 448 WESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMRNSGVSPDRHFYNV 507

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++ +F +C  +  A    + MR+E  QP   +   L++ + ++G  ++A   F+ M   G
Sbjct: 508 MIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQESG 567

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVL 473
             P       MI ++G++   +    LL +++  G      TYT L
Sbjct: 568 CSPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANVVTYTTL 613



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 77/367 (20%), Positives = 149/367 (40%), Gaps = 38/367 (10%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM------------------ 301
           Y+ LI A A+ + LE A  ++ +M  +G   D V  + ++                    
Sbjct: 258 YNALIGACARNDDLEKALNLMSRMRRDGYPSDFVNYSFIIQSLTRTNKSDSSMLQKIYAE 317

Query: 302 -------------------YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
                              ++K+G+++RA      ++ +G  P      ++I A  NAG+
Sbjct: 318 IESDKIELDGQLLNDIIVGFAKSGDVNRAMSFLAMVQGNGLSPKTATLVAVITALGNAGR 377

Query: 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402
            +   ++ + +   G+      Y ALL+ + + G ++ A  I + M    F P   + +L
Sbjct: 378 TEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSL 437

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           L++AY  AG  + AR     M   G +P+    + ++A+Y  +    K+  +L E+   G
Sbjct: 438 LIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMRNSG 497

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522
             P    Y V++D  G+   ++ A     ++   G  P      +L D + ++G   KA 
Sbjct: 498 VSPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAE 557

Query: 523 QALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVAL-ISS 581
           +    ++          +  +IN        +D + + G M++QG  A+      L +S 
Sbjct: 558 ELFEAMQESGCSPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANVVTYTTLGLSE 617

Query: 582 QTFNRQR 588
           Q  N  R
Sbjct: 618 QAINAFR 624



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/278 (21%), Positives = 119/278 (42%), Gaps = 30/278 (10%)

Query: 244 AELVLSE---ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
           A +VL E      + N   +S+++ ++      + + ++L++M  +G+ PD     V++ 
Sbjct: 451 ARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMRNSGVSPDRHFYNVMID 510

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
            + K   LD A   F+ +R  G QPD   +N++I  +  +G       L + M  SG   
Sbjct: 511 TFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQESGCSP 570

Query: 361 SEEIYLALLRSFAQ----------CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410
               Y  ++ SF +           G ++  G + N++                  Y   
Sbjct: 571 CTTTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANVV-----------------TYTTL 613

Query: 411 GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATY 470
           G  +QA + F  M   G KP      S+I A+G+     +A ++L  ++++  +P   TY
Sbjct: 614 GLSEQAINAFRVMRADGLKPSVLVLNSLINAFGEDRRDAEAFSVLQYMKENDLKPDVVTY 673

Query: 471 TVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSL 508
           T L+  L R++  ++   +  +++  G  P  K +  L
Sbjct: 674 TTLMKALIRVEKFDKVPAVYEEMTLSGCTPDRKARAML 711


>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Cucumis sativus]
          Length = 581

 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 129/276 (46%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           LS      +V  Y+ L+ +   ++  ED ER++K M  +G  P++VT ++L+  + + G 
Sbjct: 262 LSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCREGR 321

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A    E ++  G  PD   Y+ +I A+   G+  L +  ++ M++ G       Y  
Sbjct: 322 VREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNT 381

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           +L +  + G    A  +   +      PT+ +   +  A    G+  +A      MIR G
Sbjct: 382 ILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKG 441

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD+    S+I+   +  L+D+A+ LL+++E   F+P   ++ +++  + +   + E  
Sbjct: 442 IDPDEITYNSLISCLCRDGLVDEAIGLLVDMEATRFQPTVISFNIVLLGMCKAHRVFEGI 501

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
           +LL  + E G  P     V L +  A AG   +A++
Sbjct: 502 ELLITMVEKGCLPNETSYVLLIEGIAYAGWRAEAME 537



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 141/318 (44%), Gaps = 4/318 (1%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F  +V  Y+ +I +      LE A  ++ ++ ++G  P ++T T+L+      G ++ A 
Sbjct: 162 FSPDVVTYNIMIGSLCSRGKLELAFEVMDELLKDGCKPSVITYTILIEATILEGRINEAL 221

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           E F+ L S G +PD   YN++I      G     +  V  +   G       Y  LLRSF
Sbjct: 222 ELFDELVSRGLRPDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSF 281

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
                     ++   M +   +P + + ++L+ ++ + G   +A +  + M   G  PD 
Sbjct: 282 LNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDS 341

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
                +I+A+ K+  LD A+  L ++  DG  P    Y  ++  L +    + A  +  K
Sbjct: 342 YSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATLCKFGCADLALDVFEK 401

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAG 550
           + E+G  P  +   ++       G + KAL+ +   E  ++ + PD+  +  +I+ L   
Sbjct: 402 LDEVGCPPTVRAYNTMFSALWSCGNKIKALEMIS--EMIRKGIDPDEITYNSLISCLCRD 459

Query: 551 GFLQDAQRVHGLMEAQGF 568
           G + +A  +   MEA  F
Sbjct: 460 GLVDEAIGLLVDMEATRF 477



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 135/311 (43%), Gaps = 43/311 (13%)

Query: 231 RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVP 290
           R  + N  LYF   E V+S+  F+ +V   +KLI        L+ A R+++ +   G  P
Sbjct: 74  RAGKHNESLYF--LESVVSK-GFKPDVVLCTKLIKGFFNSRNLKKAMRVMEILETYG-DP 129

Query: 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV 350
           D+ +   ++  +SKA  +D A + F+ +RS GF PD   YN MI +  + G+ +L   ++
Sbjct: 130 DVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEVM 189

Query: 351 DMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410
           D ++  G                                    +P++ + T+L+EA    
Sbjct: 190 DELLKDGC-----------------------------------KPSVITYTILIEATILE 214

Query: 411 GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATY 470
           G  ++A   FD ++  G +PD     ++I    K+ + D+AL+ +  L   G  P   +Y
Sbjct: 215 GRINEALELFDELVSRGLRPDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSY 274

Query: 471 TVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEA 530
            +L+          + E+L+  +   G  P       L   + R G   +  +A+  LE 
Sbjct: 275 NILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCREG---RVREAVNVLEV 331

Query: 531 KKEQ-MGPDDF 540
            KE+ + PD +
Sbjct: 332 MKEKGLTPDSY 342



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 153/342 (44%), Gaps = 1/342 (0%)

Query: 238 QLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTV 297
           +L F+V + +L ++  + +V  Y+ LI+A   E  + +A  +  ++   G+ PD+ T   
Sbjct: 183 ELAFEVMDELL-KDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNA 241

Query: 298 LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG 357
           ++    K G  DRA +    L + G  PD   YN ++ +++N  + + G  L+  M+ SG
Sbjct: 242 IIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSG 301

Query: 358 IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
            E +   +  L+ SF + G VR A  +  +M+ +   P   S   L+ A+ + G  D A 
Sbjct: 302 CEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAI 361

Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
              + M+  G  PD     +++A   K    D AL++  +L++ G  P    Y  +   L
Sbjct: 362 EYLEKMVSDGCLPDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMFSAL 421

Query: 478 GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP 537
                  +A +++ ++   G  P      SL     R G+  +A+  L  +EA + Q   
Sbjct: 422 WSCGNKIKALEMISEMIRKGIDPDEITYNSLISCLCRDGLVDEAIGLLVDMEATRFQPTV 481

Query: 538 DDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
             F  ++ G+     + +   +   M  +G   +E   V LI
Sbjct: 482 ISFNIVLLGMCKAHRVFEGIELLITMVEKGCLPNETSYVLLI 523



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/284 (22%), Positives = 110/284 (38%), Gaps = 36/284 (12%)

Query: 298 LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG 357
           L++   +AG  + +    ES+ S GF+PD  +   +I  + N+   K  M +++++ T G
Sbjct: 68  LLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVMEILETYG 127

Query: 358 IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
                                                P + S   ++  + +A   D A 
Sbjct: 128 ------------------------------------DPDVYSYNAMISGFSKANQIDSAN 151

Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
             FD M   G  PD      MI +   +  L+ A  ++ EL KDG +P   TYT+L++  
Sbjct: 152 QVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEVMDELLKDGCKPSVITYTILIEAT 211

Query: 478 GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP 537
                INEA +L  ++   G  P      ++     + G+E +AL  +  L A+      
Sbjct: 212 ILEGRINEALELFDELVSRGLRPDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDV 271

Query: 538 DDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
             +  ++   L     +D +R+   M   G   +      LISS
Sbjct: 272 VSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISS 315


>gi|410109949|gb|AFV61054.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           turbinata]
          Length = 413

 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 120/261 (45%), Gaps = 6/261 (2%)

Query: 218 LQPSRIDWINLLD---RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           L+PS + +  L++   RL + +     K A L       Q +V  YS LI+   KE+ ++
Sbjct: 155 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLA---NGVQPDVYTYSVLINGLCKESKMD 211

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           DA  +  +M   G++P+ VT T L+  + K G +D A E ++ + S    PD   YN++I
Sbjct: 212 DANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLI 271

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
                 G  K    L+D M   G++  +  Y  L+    + GD+  A +    M  E  +
Sbjct: 272 YGLCKNGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQENIR 331

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
               + T L+    Q G    A      M+ +G KPD      +I  + KK  + K   L
Sbjct: 332 LDDVAYTALISGLCQEGQSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKL 391

Query: 455 LLELEKDGFEPGPATYTVLVD 475
           L E++++G  P   TY VL++
Sbjct: 392 LKEMQRNGHAPSVVTYNVLMN 412



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/293 (21%), Positives = 142/293 (48%), Gaps = 8/293 (2%)

Query: 214 WKELLQ---PSRIDWINLLDRLREQNTQLYFKVAELV---LSEESFQTNVRDYSKLIDAH 267
           ++E+L+   P+ + + N+L     ++  +  +VA+ V   +++   + +V  Y+ L++ +
Sbjct: 112 YEEILECGYPASLYFFNILMHRFCKDGDI--RVAQSVFDAITKWGLRPSVVSYNTLMNGY 169

Query: 268 AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK 327
            +   L++  R+   M  NG+ PD+ T +VL++   K   +D A E F+ +   G  P+ 
Sbjct: 170 IRLGDLDEGFRLKSAMLANGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNG 229

Query: 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNI 387
             + ++I  +   G+  L M +   M++  +      Y  L+    + GD++ A  + + 
Sbjct: 230 VTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKNGDLKQAHDLIDE 289

Query: 388 MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447
           M ++  +P   + T L++   + GD D A  +   MI+   + DD    ++I+   ++  
Sbjct: 290 MSMKGLKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQENIRLDDVAYTALISGLCQEGQ 349

Query: 448 LDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
              A  +L E+   G +P   TYT++++   +   + +  +LL ++   G AP
Sbjct: 350 SVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAP 402



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/267 (20%), Positives = 111/267 (41%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E  +  ++  ++ L+    K+  +  A+ +   + + G+ P +V+   L++ Y + G+LD
Sbjct: 117 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 176

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
                  ++ ++G QPD   Y+ +I       +      L D M+  G+  +   +  L+
Sbjct: 177 EGFRLKSAMLANGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLI 236

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               + G V  A +I   M  +   P L +   L+    + GD  QA    D M   G K
Sbjct: 237 DGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKNGDLKQAHDLIDEMSMKGLK 296

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     ++I    K+  LD A      + ++        YT L+  L +     +AE++
Sbjct: 297 PDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQENIRLDDVAYTALISGLCQEGQSVDAEKM 356

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAG 516
           L ++  +G  P       + + + + G
Sbjct: 357 LREMLSVGLKPDIGTYTMIINEFCKKG 383


>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
 gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
          Length = 1031

 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 130/300 (43%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +I  H ++N  + A   LK+MNE  + PD+ T  +L+    KA   D+A E    + 
Sbjct: 229 YNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMV 288

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  PD   +NS++     AG+ +   SL+ +M       S   Y  L+    +  +V 
Sbjct: 289 DRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVD 348

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  + +      F P + + ++L +   + G  D+A      M   G  P+     ++I
Sbjct: 349 RAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLI 408

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
               K +  +KA  LL  L   GF P   TYT++VD L +   +++A +++  + + G  
Sbjct: 409 DGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCT 468

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P      +L +   R G   +A      + +K        +  ++NG       ++AQ+V
Sbjct: 469 PSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKV 528



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 88/391 (22%), Positives = 166/391 (42%), Gaps = 57/391 (14%)

Query: 220 PSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAER 278
           P+ + +  L+D L +   T+  +++ E ++S   F  +V  Y+ ++D   KE  L+ A +
Sbjct: 399 PNLVTYNTLIDGLCKASKTEKAYELLESLVSS-GFVPDVVTYTIIVDGLCKEGRLDKALK 457

Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338
           +++ M + G  P ++T T L+    + G +D A   F+ + S     D   Y S++  Y 
Sbjct: 458 MVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYC 517

Query: 339 NAGQPKLGMSLVDMMITSGIERSE--EIYLALLRSFAQCG----------DVRGAGQITN 386
            + + K    +VD     GI  +   ++Y AL+  + + G          D+   G + N
Sbjct: 518 KSSRTKEAQKVVD-----GIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPN 572

Query: 387 IM-------------RIEEFQPTLES-----CT-------LLVEAYGQAGDPDQARSNFD 421
           I              +++E  P LES     C        ++++   +A  P +AR   D
Sbjct: 573 IKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLD 632

Query: 422 YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ 481
            MI+ G  PD     +++A + K+   D A+ +L  + K G +P   TY  L+  L +  
Sbjct: 633 QMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTN 692

Query: 482 LINEAEQLLGKISELGEAPPFKIQVSLCDMY-------ARAGIEKKALQALGFLEAKKEQ 534
            + +A +L+ ++   G        VS C  Y        + G  K+AL  +  +     +
Sbjct: 693 RLGDAYELMHEMLRNG------CVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVE 746

Query: 535 MGPDDFERIINGLLAGGFLQDAQRVHGLMEA 565
                +   I+ L   G L +A  +   M+ 
Sbjct: 747 ANTVTYNIFIDRLCKEGRLDEASSLLSEMDT 777



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 131/320 (40%), Gaps = 3/320 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           ++E     +V  Y+ LID   K +  + A  +L +M + G+ PD VT   ++    KAG 
Sbjct: 252 MNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGK 311

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            +RA      +     +P    YN++I              LVD  ++SG       Y  
Sbjct: 312 FERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSI 371

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L     + G +  A ++   M  +   P L +   L++   +A   ++A    + ++  G
Sbjct: 372 LADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSG 431

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD      ++    K+  LDKAL ++  + K G  P   TYT L++ L R   ++EA 
Sbjct: 432 FVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAH 491

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
            +  ++            VSL + Y ++   K+A + +  +         D +  +++G 
Sbjct: 492 HIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYI---DVYNALMDGY 548

Query: 548 LAGGFLQDAQRVHGLMEAQG 567
              G L +   V   M  +G
Sbjct: 549 CKEGRLDEIPNVFEDMACRG 568



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 132/323 (40%), Gaps = 23/323 (7%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+D + KE  L++   + + M   G VP+I T  +++    K G +D A    ES+ 
Sbjct: 541 YNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMH 600

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           S G  PD   YN +I     A +PK    ++D MI +GI      Y  L+  F  C + R
Sbjct: 601 SAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQF--CKEER 658

Query: 380 ---GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
                G + N+++     P   +   L+    Q      A      M+R G      C  
Sbjct: 659 FDDAVGILKNMIK-AGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNG------CVV 711

Query: 437 SMIAAYG-------KKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           S    Y        K+  L +AL L+  +   G E    TY + +D L +   ++EA  L
Sbjct: 712 SACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSL 771

Query: 490 LGKISEL-GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLL 548
           L ++  L  E     + + LC       +++ +  A   +  K   +    F  +I+   
Sbjct: 772 LSEMDTLRDEVSYTTVIIGLCKA---EQLDRASKLAREMVAVKGLCITSHTFNLLIDAFT 828

Query: 549 AGGFLQDAQRVHGLMEAQGFAAS 571
               L +A  + GLM  +G + S
Sbjct: 829 KTKRLDEALTLLGLMVQRGCSPS 851



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 88/407 (21%), Positives = 163/407 (40%), Gaps = 50/407 (12%)

Query: 211 LAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKE 270
           L +W+  LQP+ +  +  L RL++  T + F V      +  F+ +    +  +    + 
Sbjct: 84  LEQWRGTLQPAVVSRV--LQRLKDPQTAIVFFVWA---GDRGFKHSTFTRNCFLQTLLEN 138

Query: 271 NCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVY 330
              +    + ++M + G  PD  T  +++    +   +D+A    +  +  GF+P+  VY
Sbjct: 139 GSSDRIPAMFERMLDAGYAPDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVY 198

Query: 331 NSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI-YLALLRSFAQCGDVRGAGQITNIMR 389
             +  A+   G+ K  +      I   I   + I Y A++    +  D  GA +    M 
Sbjct: 199 TILTRAFCKTGRLKDALE-----IFRNIPSPDAIAYNAIIHGHCRKNDCDGALEFLKEMN 253

Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD------------------ 431
             +  P + +  +L++   +A   D+A      M+  G  PD                  
Sbjct: 254 ERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFE 313

Query: 432 ----------------DRCT-ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
                             CT  ++I+   K+  +D+A +L+ E    GF P   TY++L 
Sbjct: 314 RAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILA 373

Query: 475 DWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ 534
           D L +   I+EA +L+ ++S  G  P      +L D   +A   +KA + L  L +    
Sbjct: 374 DGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVS--SG 431

Query: 535 MGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
             PD   +  I++GL   G L  A ++   M  +G   S     AL+
Sbjct: 432 FVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALM 478



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 79/374 (21%), Positives = 158/374 (42%), Gaps = 14/374 (3%)

Query: 192 KLITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKVAELVLSE 250
            ++ D +    K +  S +L E  +  + P  + + +++D L +            V++E
Sbjct: 265 NILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAE 324

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
            + + +   Y+ LI    K+  ++ A+ ++ +   +G VPD+VT ++L     K G +D 
Sbjct: 325 RNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDE 384

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A E  + +   G  P+   YN++I     A + +    L++ +++SG       Y  ++ 
Sbjct: 385 AFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVD 444

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
              + G +  A ++   M      P++ + T L+E   + G  D+A   F  M+      
Sbjct: 445 GLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTA 504

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPA--TYTVLVDWLGRLQLINEAEQ 488
           D     S++  Y K +   +A  ++     DG    P    Y  L+D   +   ++E   
Sbjct: 505 DALAYVSLVNGYCKSSRTKEAQKVV-----DGIRGTPYIDVYNALMDGYCKEGRLDEIPN 559

Query: 489 LLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ-MGPD--DFERIIN 545
           +   ++  G  P  K    + D   + G   K  +A  FLE+       PD   +  II+
Sbjct: 560 VFEDMACRGCVPNIKTYNIVMDGLCKHG---KVDEAFPFLESMHSAGCVPDVVSYNIIID 616

Query: 546 GLLAGGFLQDAQRV 559
           GL      ++A++V
Sbjct: 617 GLFKASKPKEARQV 630



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 119/284 (41%), Gaps = 12/284 (4%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF-ESL 318
           Y+ L+    KE   +DA  ILK M + G+ PD VT   L+   S+   L  A E   E L
Sbjct: 646 YNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEML 705

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
           R+         YN++I      G  K  + L+D M   G+E +   Y   +    + G +
Sbjct: 706 RNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRL 765

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL-GHKPDDRCTAS 437
             A  + + M  +  +  +   T+++    +A   D+A      M+ + G          
Sbjct: 766 DEASSLLSEM--DTLRDEVSYTTVII-GLCKAEQLDRASKLAREMVAVKGLCITSHTFNL 822

Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           +I A+ K   LD+AL LL  + + G  P   TY +++  L +L  +++A +L  +++  G
Sbjct: 823 LIDAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRG 882

Query: 498 EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFE 541
                     L       G  K+ALQ L       E+M   D E
Sbjct: 883 IVASSVSYTVLIYGLCGQGRGKEALQVL-------EEMASSDCE 919



 Score = 43.9 bits (102), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 27/118 (22%), Positives = 54/118 (45%)

Query: 242 KVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM 301
           K+A  +++ +        ++ LIDA  K   L++A  +L  M + G  P ++T  +++  
Sbjct: 802 KLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMVITC 861

Query: 302 YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
             K   +D+A E F+ +   G       Y  +I      G+ K  + +++ M +S  E
Sbjct: 862 LCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMASSDCE 919


>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
 gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
          Length = 600

 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 95/392 (24%), Positives = 174/392 (44%), Gaps = 42/392 (10%)

Query: 220 PSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAER 278
           P+R  +  ++D L + Q      KV E ++ +      +  Y+ LID  +K + +++A +
Sbjct: 176 PTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTIT-YTTLIDGFSKASKMDEARK 234

Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338
           +L  M   G  P  VT   +VH + K   ++ AKE    +R  G +P   ++ S++  Y+
Sbjct: 235 LLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYL 294

Query: 339 NAGQPK-------------------LGMSLVDMMITSG------------IERSEE---- 363
           + G+ +                   L  SL+D++ ++G            IE+       
Sbjct: 295 SKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDAL 354

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
            Y  ++++F++ G+V  AG+I  +M      P   +   L++ Y +    DQA   +D M
Sbjct: 355 TYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRM 414

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE-LEKDGFEPGPATYTVLVDWLGRLQL 482
           +  G KP+      ++    K    D+A +L  E LEK+   P   +YT+L+D LG+   
Sbjct: 415 VASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAGR 474

Query: 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DF 540
           ++EA     ++ + G  P      SL    A+AG   +A + +   +  K  + PD   +
Sbjct: 475 VSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVE--DMVKLGVNPDVQAY 532

Query: 541 ERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572
             +I GL+    +  A  V   M  +G A +E
Sbjct: 533 SALITGLIDSSMVDTAWDVFQEMMKRGCAPNE 564



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 137/337 (40%), Gaps = 60/337 (17%)

Query: 197 KILSLEKEEDPSPLLAEWKELLQP-SRIDWIN----LLDRLREQNTQLYFKVAELVLS-- 249
           K+L +   + P P    +  ++    ++D IN    ++ ++RE+  +    +   +LS  
Sbjct: 234 KLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYY 293

Query: 250 ------EESFQT-----------NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDI 292
                 EE++Q            +V  Y+ LID       + +A  +   M E G  PD 
Sbjct: 294 LSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDA 353

Query: 293 VTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDM 352
           +T   ++  +SK GN++ A E  E +   G  PD   YNS++  YV   +      + D 
Sbjct: 354 LTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDR 413

Query: 353 MITSGIERSEEIYLALLRSFAQCGDV-RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAG 411
           M+ SGI+ +   +  L+    + G   R       ++  EE  PTL S T+L++  G+AG
Sbjct: 414 MVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAG 473

Query: 412 DPDQARSNFDYMI-----------------------------------RLGHKPDDRCTA 436
              +A   F  MI                                   +LG  PD +  +
Sbjct: 474 RVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYS 533

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVL 473
           ++I      +++D A ++  E+ K G  P   TY VL
Sbjct: 534 ALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVL 570



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 73/336 (21%), Positives = 142/336 (42%), Gaps = 7/336 (2%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
            +  Y+ +I   A  + +++A +    M +NG  PD++  T L+H + KAG      +  
Sbjct: 6   TIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHKLL 65

Query: 316 -ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
            ++L+   F+PD  +Y S+I  Y  AG    G       +T         Y  +++  A 
Sbjct: 66  NQALKR--FRPDVFLYTSVIHGYCKAGDLDTGYFRA---VTPKASLDVISYTTVIKGLAD 120

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
              +  A ++   ++     P + + T +++   +AG  +    NF+ M      P    
Sbjct: 121 SKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTT 180

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
              +I    K  +L  A  +  ++ + G  P   TYT L+D   +   ++EA +LL  + 
Sbjct: 181 YTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVML 240

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQ 554
             G  P      S+   + +  +  +A + +  +  +  + G   F  +++  L+ G  +
Sbjct: 241 TKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAE 300

Query: 555 DAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQP 590
           +A +V   M A+G A    L  +LI    F+  R P
Sbjct: 301 EAYQVLTEMTARGCAPDVILYTSLI-DLLFSTGRVP 335



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/296 (23%), Positives = 124/296 (41%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ +ID   K   +ED  +  ++M+ +  VP   T TV++    KA  L  A + F
Sbjct: 142 NVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVF 201

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E +   G  PD   Y ++I  +  A +      L+D+M+T G E +   Y +++  F + 
Sbjct: 202 EQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKL 261

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
             +  A ++   MR    +P L   T L+  Y   G  ++A      M   G  PD    
Sbjct: 262 DMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILY 321

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            S+I        + +A ++   + + G  P   TY  ++    ++  +  A ++L  +++
Sbjct: 322 TSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAK 381

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGG 551
            G  P      SL D Y +     +A      + A   +     F  +++GL   G
Sbjct: 382 SGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDG 437



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 140/319 (43%), Gaps = 42/319 (13%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F+ +V  Y+ +I  + K   L+      + +     + D+++ T ++   + +  +D A 
Sbjct: 72  FRPDVFLYTSVIHGYCKAGDLDTG--YFRAVTPKASL-DVISYTTVIKGLADSKRIDEAC 128

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           E FE L++ G  P+   Y ++I   + AG+           I  G++  EE+      S 
Sbjct: 129 ELFEELKTAGCSPNVVAYTAVIDGLLKAGR-----------IEDGLKNFEEM------SG 171

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
           + C                   PT  + T++++   +A     A   F+ M++ G  PD 
Sbjct: 172 SSC------------------VPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDT 213

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               ++I  + K + +D+A  LL  +   G EP   TY  +V    +L +INEA++++ +
Sbjct: 214 ITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQ 273

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAG 550
           + E G  P   I  SL   Y   G  ++A Q L  + A+     PD   +  +I+ L + 
Sbjct: 274 MRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARG--CAPDVILYTSLIDLLFST 331

Query: 551 GFLQDAQRVHGLMEAQGFA 569
           G + +A+ V   M  +G A
Sbjct: 332 GRVPEARHVFDSMIEKGCA 350



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/296 (20%), Positives = 130/296 (43%), Gaps = 8/296 (2%)

Query: 287 GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLG 346
           G  P IV+   ++   +    +D A + F S+  +G +PD   + ++I  +  AGQP++G
Sbjct: 2   GCEPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVG 61

Query: 347 MSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE--SCTLLV 404
             L++  +         +Y +++  + + GD+      T   R    + +L+  S T ++
Sbjct: 62  HKLLNQALKR-FRPDVFLYTSVIHGYCKAGDLD-----TGYFRAVTPKASLDVISYTTVI 115

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
           +    +   D+A   F+ +   G  P+     ++I    K   ++  L    E+      
Sbjct: 116 KGLADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCV 175

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQA 524
           P   TYTV++D L + Q++ +A ++  ++ + G  P      +L D +++A    +A + 
Sbjct: 176 PTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKL 235

Query: 525 LGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
           L  +  K  +     +  I++G      + +A+ V   M  +G      +  +L+S
Sbjct: 236 LDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLS 291



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 76/160 (47%), Gaps = 1/160 (0%)

Query: 218 LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           ++P+ + +  L+  L ++  T   F + + +L +E     +  Y+ LID   K   + +A
Sbjct: 419 IKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAGRVSEA 478

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
               ++M + GI+P+  T T L++  +KAG +  AK+  E +   G  PD + Y+++I  
Sbjct: 479 FLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITG 538

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
            +++        +   M+  G   +E  Y  L R F   G
Sbjct: 539 LIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAG 578


>gi|186495472|ref|NP_177628.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|133778904|gb|ABO38792.1| At1g74900 [Arabidopsis thaliana]
 gi|332197524|gb|AEE35645.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 453

 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 137/299 (45%), Gaps = 11/299 (3%)

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           + A ++   M+E+G   D+ +   ++ +  K+  +++A E F +LR   F  D   YN +
Sbjct: 143 DKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGR-FSVDTVTYNVI 201

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           +  +    +    + ++  M+  GI  +   Y  +L+ F + G +R A +    M+  + 
Sbjct: 202 LNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDC 261

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
           +  + + T +V  +G AG+  +AR+ FD MIR G  P      +MI    KK+ ++ A+ 
Sbjct: 262 EIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVV 321

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
           +  E+ + G+EP   TY VL+  L      +  E+L+ ++   G  P F+    +   Y+
Sbjct: 322 MFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYS 381

Query: 514 RAGIEKKALQALGFLEAKKEQMGPDDF---ERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
                +KAL          E+MG  D        N L++G F++       +   Q FA
Sbjct: 382 ECSEVEKALGLF-------EKMGSGDCLPNLDTYNILISGMFVRKRSEDMVVAGNQAFA 433



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 99/223 (44%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F  +   Y+ +++          A  +LK+M E GI P++ T   ++  + +AG +  A 
Sbjct: 191 FSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAW 250

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           E F  ++    + D   Y +++  +  AG+ K   ++ D MI  G+  S   Y A+++  
Sbjct: 251 EFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVL 310

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            +  +V  A  +   M    ++P + +  +L+     AG+  +       M   G +P+ 
Sbjct: 311 CKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNF 370

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
           +    MI  Y + + ++KAL L  ++      P   TY +L+ 
Sbjct: 371 QTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILIS 413



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 84/185 (45%), Gaps = 10/185 (5%)

Query: 232 LREQNTQL--YFKVAELVLSEESF--------QTNVRDYSKLIDAHAKENCLEDAERILK 281
           L   NT L  +F+  ++  + E F        + +V  Y+ ++        ++ A  +  
Sbjct: 230 LTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFD 289

Query: 282 KMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAG 341
           +M   G++P + T   ++ +  K  N++ A   FE +   G++P+   YN +I    +AG
Sbjct: 290 EMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAG 349

Query: 342 QPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCT 401
           +   G  L+  M   G E + + Y  ++R +++C +V  A  +   M   +  P L++  
Sbjct: 350 EFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYN 409

Query: 402 LLVEA 406
           +L+  
Sbjct: 410 ILISG 414



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/176 (20%), Positives = 74/176 (42%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E     N+  Y+ ++    +   +  A     +M +     D+VT T +VH +  AG 
Sbjct: 221 MVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGE 280

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           + RA+  F+ +   G  P    YN+MI         +  + + + M+  G E +   Y  
Sbjct: 281 IKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNV 340

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
           L+R     G+     ++   M  E  +P  ++  +++  Y +  + ++A   F+ M
Sbjct: 341 LIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKM 396


>gi|413934891|gb|AFW69442.1| hypothetical protein ZEAMMB73_914225 [Zea mays]
          Length = 507

 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 108/250 (43%), Gaps = 14/250 (5%)

Query: 227 NLLDRLREQNTQLYFKVAELVL--SEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMN 284
           ++L RL   N  ++ K  +LV+   E   + +V+ YS LID   K   L DA R+  KM 
Sbjct: 197 SMLVRLYRDNG-MWKKATDLVMEMQEVGVELDVKIYSGLIDTFGKYGQLADARRMFDKMR 255

Query: 285 ENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPK 344
             G+ PDI T   L+  + + GN+ RA   F S++  G  PD K++  +I      G+  
Sbjct: 256 AEGVRPDISTWNALIQWHCRVGNMKRALRFFTSMQEEGMYPDPKIFVMIISRLGEQGKWD 315

Query: 345 LGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
               L D M   G + S  +Y  L+  + Q G  R A      +R E  Q       ++ 
Sbjct: 316 EIKKLFDGMNNRGFKESGAVYAILVDIYGQYGHFRDAQDCIAALRAENTQLLPRVFCVIA 375

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
            AY Q             M   G +P+     S+I A+G      +AL +   ++  G  
Sbjct: 376 NAYAQ-----------QLMEEEGFEPNLVMLNSLINAFGTAGRHLEALAVFQHIKDSGMS 424

Query: 465 PGPATYTVLV 474
           P   TYT L+
Sbjct: 425 PDVVTYTTLM 434



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 122/281 (43%), Gaps = 26/281 (9%)

Query: 282 KMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAG 341
           +M ++G+  +  T T+L+  Y++AG L+ +      +R  G + D   Y+ ++  Y + G
Sbjct: 148 QMADDGVARNRRTYTLLLGAYARAGRLEDSWWVLGEMRRWGIRLDTAGYSMLVRLYRDNG 207

Query: 342 QPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCT 401
             K    LV  M   G+E   +IY  L+ +F + G +  A ++ + MR E  +P + +  
Sbjct: 208 MWKKATDLVMEMQEVGVELDVKIYSGLIDTFGKYGQLADARRMFDKMRAEGVRPDISTWN 267

Query: 402 LLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD 461
            L++ + + G+  +A   F  M   G  PD +    +I+  G++   D+   L   +   
Sbjct: 268 ALIQWHCRVGNMKRALRFFTSMQEEGMYPDPKIFVMIISRLGEQGKWDEIKKLFDGMNNR 327

Query: 462 GFEPGPATYTVLVDWLGRLQLINEAE-----------QLLGKI-------------SELG 497
           GF+   A Y +LVD  G+     +A+           QLL ++              E G
Sbjct: 328 GFKESGAVYAILVDIYGQYGHFRDAQDCIAALRAENTQLLPRVFCVIANAYAQQLMEEEG 387

Query: 498 EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
             P   +  SL + +  AG   +AL    F   K   M PD
Sbjct: 388 FEPNLVMLNSLINAFGTAGRHLEALAV--FQHIKDSGMSPD 426



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 130/322 (40%), Gaps = 40/322 (12%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y + I +HA  + L  +  +L  M  +G  P       L+   S+AG    A+     +R
Sbjct: 57  YDRAIQSHAGSD-LARSLGLLADMQASGGRPSGSAYARLIRALSRAGRALEAEALLLEMR 115

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +P+   YN+++   + A   +L   L+  M   G+ R+   Y              
Sbjct: 116 RLGPRPEAAHYNALLEGLLAAAHLRLADLLLLQMADDGVARNRRTY-------------- 161

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
                                TLL+ AY +AG  + +      M R G + D    + ++
Sbjct: 162 ---------------------TLLLGAYARAGRLEDSWWVLGEMRRWGIRLDTAGYSMLV 200

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             Y    +  KA +L++E+++ G E     Y+ L+D  G+   + +A ++  K+   G  
Sbjct: 201 RLYRDNGMWKKATDLVMEMQEVGVELDVKIYSGLIDTFGKYGQLADARRMFDKMRAEGVR 260

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQDAQ 557
           P      +L   + R G  K+AL+   F   ++E M PD   F  II+ L   G   + +
Sbjct: 261 PDISTWNALIQWHCRVGNMKRALRF--FTSMQEEGMYPDPKIFVMIISRLGEQGKWDEIK 318

Query: 558 RVHGLMEAQGFAASERLKVALI 579
           ++   M  +GF  S  +   L+
Sbjct: 319 KLFDGMNNRGFKESGAVYAILV 340



 Score = 42.0 bits (97), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 8/92 (8%)

Query: 232 LREQNTQLYFKV--------AELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKM 283
           LR +NTQL  +V        A+ ++ EE F+ N+   + LI+A        +A  + + +
Sbjct: 359 LRAENTQLLPRVFCVIANAYAQQLMEEEGFEPNLVMLNSLINAFGTAGRHLEALAVFQHI 418

Query: 284 NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
            ++G+ PD+VT T L+  + +A   ++    F
Sbjct: 419 KDSGMSPDVVTYTTLMKTFMRAKKFEKVSIEF 450


>gi|224097576|ref|XP_002310993.1| predicted protein [Populus trichocarpa]
 gi|222850813|gb|EEE88360.1| predicted protein [Populus trichocarpa]
          Length = 877

 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 115/239 (48%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
            V  ++ L+    ++  +E A  IL +M   G+ PD  T T +++ Y+  G+  +A E F
Sbjct: 587 TVHTFNALVLGLVEKRQMEKAVEILDEMALAGVSPDEHTYTTIMNGYAALGDTGKAFEYF 646

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             LR+ G + D   Y +++ A   +G+ +  +++   M    I R+  +Y  L+  +A+ 
Sbjct: 647 TKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTREMSAQNIPRNTFVYNILIDGWARR 706

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           GDV  A  +   M+ E  QP + + T  + A  +AGD  +A      M  LG KP+ +  
Sbjct: 707 GDVWEAADLMQQMKQEGVQPDIHTYTSFINACCKAGDMLRATKTIQEMEALGVKPNVKTY 766

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
            ++I  +   +L +KAL    E++  G +P  A Y  L+  L     + EA    G +S
Sbjct: 767 TTLIHGWACASLPEKALRCFEEMKLAGLKPDKAVYHCLMTSLLSRATVAEAYIYSGILS 825



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 71/325 (21%), Positives = 146/325 (44%), Gaps = 6/325 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAK-----ENC-LEDAERILKKMNENGIVPDIVTSTVLVHM 301
           + EE  + ++  YS ++   AK     ++C ++ AE ++++M E GI   I     +++ 
Sbjct: 363 MKEEGVEMSLVTYSIVVGGFAKIGNADQSCNMDRAESLVREMEEEGIDAPIDIYHTMMNG 422

Query: 302 YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS 361
           Y+  GN ++    F+ L+  GF P    Y  +I  Y   G+    + +  MM ++GI+ +
Sbjct: 423 YTMIGNEEKCLIVFKRLKECGFAPSVISYGCLINMYTKMGKVSKALEVSKMMESAGIKHN 482

Query: 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421
            + Y  L+  F +  D   A  +   +  +  +P +     +++A+   G+ D+A     
Sbjct: 483 MKTYSMLINGFLKLKDWTNAFTVFEDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVK 542

Query: 422 YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ 481
            M +  H+P  R    +I  + +   + +AL +   + + G  P   T+  LV  L   +
Sbjct: 543 EMQKKRHRPTSRTFMPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLVEKR 602

Query: 482 LINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFE 541
            + +A ++L +++  G +P      ++ + YA  G   KA +    L  +  ++    +E
Sbjct: 603 QMEKAVEILDEMALAGVSPDEHTYTTIMNGYAALGDTGKAFEYFTKLRNEGLELDVFTYE 662

Query: 542 RIINGLLAGGFLQDAQRVHGLMEAQ 566
            ++      G +Q A  V   M AQ
Sbjct: 663 ALLKACCKSGRMQSALAVTREMSAQ 687



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 77/370 (20%), Positives = 160/370 (43%), Gaps = 12/370 (3%)

Query: 218 LQPSRIDW---INLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
             PS I +   IN+  ++ + +  L  +V++++ S    + N++ YS LI+   K     
Sbjct: 444 FAPSVISYGCLINMYTKMGKVSKAL--EVSKMMESA-GIKHNMKTYSMLINGFLKLKDWT 500

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           +A  + + + ++G+ PD+V    ++  +   GN+DRA    + ++    +P  + +  +I
Sbjct: 501 NAFTVFEDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKKRHRPTSRTFMPII 560

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
             +  AG+ +  + + DMM  SG   +   + AL+    +   +  A +I + M +    
Sbjct: 561 HGFARAGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLVEKRQMEKAVEILDEMALAGVS 620

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRL---GHKPDDRCTASMIAAYGKKNLLDKA 451
           P   + T ++  Y   GD  +A   F+Y  +L   G + D     +++ A  K   +  A
Sbjct: 621 PDEHTYTTIMNGYAALGDTGKA---FEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSA 677

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
           L +  E+           Y +L+D   R   + EA  L+ ++ + G  P      S  + 
Sbjct: 678 LAVTREMSAQNIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDIHTYTSFINA 737

Query: 512 YARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAAS 571
             +AG   +A + +  +EA   +     +  +I+G       + A R    M+  G    
Sbjct: 738 CCKAGDMLRATKTIQEMEALGVKPNVKTYTTLIHGWACASLPEKALRCFEEMKLAGLKPD 797

Query: 572 ERLKVALISS 581
           + +   L++S
Sbjct: 798 KAVYHCLMTS 807



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 68/300 (22%), Positives = 125/300 (41%), Gaps = 12/300 (4%)

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           ++V  Y++ G++ RA++ FES+R  G  P   VY S+I AY      +  +S V  M   
Sbjct: 307 LMVGYYARRGDMHRARQTFESMRVRGIYPSSHVYTSLIHAYAVGRDMEEALSCVRKMKEE 366

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLES---------CTLLVEAY 407
           G+E S   Y  ++  FA+ G+   A Q  N+ R E     +E             ++  Y
Sbjct: 367 GVEMSLVTYSIVVGGFAKIGN---ADQSCNMDRAESLVREMEEEGIDAPIDIYHTMMNGY 423

Query: 408 GQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGP 467
              G+ ++    F  +   G  P       +I  Y K   + KAL +   +E  G +   
Sbjct: 424 TMIGNEEKCLIVFKRLKECGFAPSVISYGCLINMYTKMGKVSKALEVSKMMESAGIKHNM 483

Query: 468 ATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGF 527
            TY++L++   +L+    A  +   + + G  P   +  ++   +   G   +A+  +  
Sbjct: 484 KTYSMLINGFLKLKDWTNAFTVFEDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKE 543

Query: 528 LEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQ 587
           ++ K+ +     F  II+G    G ++ A  +  +M   G   +     AL+      RQ
Sbjct: 544 MQKKRHRPTSRTFMPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLVEKRQ 603



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 73/143 (51%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +S ++   N   Y+ LID  A+   + +A  ++++M + G+ PDI T T  ++   KAG+
Sbjct: 684 MSAQNIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDIHTYTSFINACCKAGD 743

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           + RA +  + + + G +P+ K Y ++I  +  A  P+  +   + M  +G++  + +Y  
Sbjct: 744 MLRATKTIQEMEALGVKPNVKTYTTLIHGWACASLPEKALRCFEEMKLAGLKPDKAVYHC 803

Query: 368 LLRSFAQCGDVRGAGQITNIMRI 390
           L+ S      V  A   + I+ I
Sbjct: 804 LMTSLLSRATVAEAYIYSGILSI 826



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 88/195 (45%), Gaps = 10/195 (5%)

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
           +P      L+V  Y + GD  +AR  F+ M   G  P      S+I AY     +++AL+
Sbjct: 299 KPARREFGLMVGYYARRGDMHRARQTFESMRVRGIYPSSHVYTSLIHAYAVGRDMEEALS 358

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRL----QLIN--EAEQLLGKISELGEAPPFKIQVS 507
            + +++++G E    TY+++V    ++    Q  N   AE L+ ++ E G   P  I  +
Sbjct: 359 CVRKMKEEGVEMSLVTYSIVVGGFAKIGNADQSCNMDRAESLVREMEEEGIDAPIDIYHT 418

Query: 508 LCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEA 565
           + + Y   G E+K L  + F   K+    P    +  +IN     G +  A  V  +ME+
Sbjct: 419 MMNGYTMIGNEEKCL--IVFKRLKECGFAPSVISYGCLINMYTKMGKVSKALEVSKMMES 476

Query: 566 QGFAASERLKVALIS 580
            G   + +    LI+
Sbjct: 477 AGIKHNMKTYSMLIN 491


>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
 gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
          Length = 567

 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 116/246 (47%), Gaps = 5/246 (2%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
            V  Y+ ++D   K     DA ++L +M + G  P+I T  V+V    +   LD AK+  
Sbjct: 111 TVVTYTNIVDGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKML 170

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMS-LVDMMITSGIERSEEIYLALLRSFAQ 374
           E +   G+ PD   YNS I       +       L  M +T  +      Y  ++    +
Sbjct: 171 EEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPVTPDVVS----YTTVINGLCK 226

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
            GD+  A ++ + M      P + + + L++ + + G+ ++A    D M++LG +P+   
Sbjct: 227 SGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVA 286

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
             S++ A  +   + KA ++L+E+E+ GF P   +Y   +D L + + + +A+ +  ++ 
Sbjct: 287 YNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMV 346

Query: 495 ELGEAP 500
           E G  P
Sbjct: 347 ERGCTP 352



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 88/393 (22%), Positives = 158/393 (40%), Gaps = 75/393 (19%)

Query: 224 DWINLLDRLREQ----NTQLYFKVAELVLSEE---------------SFQTNVRDYSKLI 264
           D + LLD +R++    N   Y  + E +  E                 +  +V  Y+  I
Sbjct: 130 DAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFI 189

Query: 265 DAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQ 324
               K + +++A + L +M    + PD+V+ T +++   K+G+LD A    + + + G  
Sbjct: 190 KGLCKCDRVDEARKFLARMP---VTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCT 246

Query: 325 PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQI 384
           PD   Y+S+I  +   G+ +  M L+D M+  G   +   Y +LL +  + G +  A  +
Sbjct: 247 PDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDM 306

Query: 385 TNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP-------------- 430
              M    F P + S    ++   +A    +A++ FD M+  G  P              
Sbjct: 307 LVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDILL 366

Query: 431 --------------DDRCT------------------ASMIAAYGKKNLLDKALNLLLE- 457
                         D+ C                     M+ ++ K+  +DKAL +  + 
Sbjct: 367 YTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQM 426

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI 517
           LEK+       T+ +LV  L     +++AE +L  + + G  P F    +L D   + G 
Sbjct: 427 LEKNC--CNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGK 484

Query: 518 EKKALQALGFLEAKKEQMGPD--DFERIINGLL 548
              AL+   F EA K    PD   +  +I GL+
Sbjct: 485 SAAALEL--FEEAVKGGCVPDVVTYSALITGLV 515



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/320 (21%), Positives = 141/320 (44%), Gaps = 9/320 (2%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           ++ NV  Y+KL+    +E+  + A  + ++M +    PD  T  +L+    ++  L++A+
Sbjct: 3   YEHNVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKAR 62

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           +    ++  G  PD  +YN++I  Y  A         +  M+ +    +   Y  ++   
Sbjct: 63  KLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGL 122

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            +    R A ++ + MR +   P + +  ++VE   +    D+A+   + M   G+ PD 
Sbjct: 123 CKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDV 182

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               S I    K + +D+A   L  +      P   +YT +++ L +   ++ A ++L  
Sbjct: 183 VTYNSFIKGLCKCDRVDEARKFLARMP---VTPDVVSYTTVINGLCKSGDLDSASRMLDH 239

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK-KEQMGPD--DFERIINGLLA 549
           +S  G  P      SL D + + G   +  +A+G L++  K    P+   +  ++  L  
Sbjct: 240 MSNRGCTPDVVTYSSLIDGFCKGG---EVERAMGLLDSMLKLGCRPNMVAYNSLLGALHR 296

Query: 550 GGFLQDAQRVHGLMEAQGFA 569
            G +  A+ +   ME +GF 
Sbjct: 297 LGHIGKAEDMLVEMERRGFT 316



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 70/307 (22%), Positives = 121/307 (39%), Gaps = 38/307 (12%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNL- 308
           ++S Q +   ++ L+    + N LE A ++L +M E G VPD      L+  YSKA +  
Sbjct: 35  DKSCQPDAFTFAILLRGLCRSNQLEKARKLLGRMKEMGCVPDDAIYNALISGYSKAKDFG 94

Query: 309 -------------------------------DRAKEA---FESLRSHGFQPDKKVYNSMI 334
                                          +R ++A    + +R  G  P+   YN ++
Sbjct: 95  QAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIV 154

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
                  +      +++ M   G       Y + ++   +C  V  A +    M +    
Sbjct: 155 EGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPV---T 211

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P + S T ++    ++GD D A    D+M   G  PD    +S+I  + K   +++A+ L
Sbjct: 212 PDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGL 271

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
           L  + K G  P    Y  L+  L RL  I +AE +L ++   G  P      +  D   +
Sbjct: 272 LDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCK 331

Query: 515 AGIEKKA 521
           A   KKA
Sbjct: 332 AERVKKA 338



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 40/85 (47%)

Query: 255 TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA 314
            NV  ++ L+     ++ L DAE +L  M + G +PD VT   LV    K G    A E 
Sbjct: 432 CNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALEL 491

Query: 315 FESLRSHGFQPDKKVYNSMIMAYVN 339
           FE     G  PD   Y+++I   V+
Sbjct: 492 FEEAVKGGCVPDVVTYSALITGLVH 516


>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
 gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
          Length = 570

 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 143/327 (43%), Gaps = 13/327 (3%)

Query: 192 KLITDKILSLEK--EEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLS 249
           K I D +  +EK      +P +A +  LL     + +  + RL E+   L  K+ +    
Sbjct: 179 KKIQDAVALMEKITANGCTPTIATYNALL-----NGLCKMGRL-EEAIDLLRKIVD---- 228

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
                 +V  Y+ LID   KE    +A ++ K+M   G+V D V  T L+    +AG + 
Sbjct: 229 -NGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIP 287

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
           +A   ++++ S G  PD    ++MI     AG+    + +   M   G+  +E +Y AL+
Sbjct: 288 QASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALI 347

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               +   +  A ++   M+     P   +  +L++   ++GD + AR+ FD M+  G K
Sbjct: 348 HGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCK 407

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD      +++ + K    D A  +  ++      P   TY  L+  L + + + +A   
Sbjct: 408 PDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCKRRQLTKASLY 467

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAG 516
              + E G  P   +  SL D   ++G
Sbjct: 468 FQHMKERGCPPDSFVYSSLVDGLCKSG 494



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/328 (22%), Positives = 136/328 (41%), Gaps = 14/328 (4%)

Query: 232 LREQNTQLY--FKVAELVLSEESFQT--------NVRDYSKLIDAHAKENCLEDAERILK 281
           L+  N  L+   K  +++ + + F+T        ++  Y+ ++D  AK   ++DA  +++
Sbjct: 130 LKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDAVALME 189

Query: 282 KMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAG 341
           K+  NG  P I T   L++   K G L+ A +    +  +G  PD   Y S+I       
Sbjct: 190 KITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEK 249

Query: 342 QPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCT 401
           +      L   M   G+      Y AL+R   Q G +  A  +   M  +   P + + +
Sbjct: 250 RSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLS 309

Query: 402 LLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD 461
            +++   +AG    A   F  M   G  P++   +++I    K   +D AL +L +++K 
Sbjct: 310 TMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKA 369

Query: 462 GFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKA 521
              P   TY +L+D L +   +  A     ++ E G  P       L   + +AG    A
Sbjct: 370 FCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAA 429

Query: 522 LQALGFLEAKKEQMGPD--DFERIINGL 547
                F +       P+   +  +I+GL
Sbjct: 430 CGV--FDDMSSSHCSPNVVTYGTLISGL 455



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 103/256 (40%), Gaps = 1/256 (0%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
            ++ +    +V   S +ID   K   +  A RI K M   G+ P+ V  + L+H   KA 
Sbjct: 295 TMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKAR 354

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            +D A E    ++     PD   YN +I     +G  +   +  D M+ +G +     Y 
Sbjct: 355 KMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYN 414

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+  F + G+   A  + + M      P + +   L+    +     +A   F +M   
Sbjct: 415 ILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKER 474

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G  PD    +S++    K   L+    L  E+E+ G      T T L+  L +   ++EA
Sbjct: 475 GCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGV-ANSQTRTRLIFHLCKANRVDEA 533

Query: 487 EQLLGKISELGEAPPF 502
             L   I + G   P+
Sbjct: 534 VSLFNAIRKEGMPHPY 549



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 134/334 (40%), Gaps = 48/334 (14%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           FQ +V   + L+D  A+     +A  +LK       +PD+ T  VL+  Y  A      +
Sbjct: 55  FQHSVHTGNALLDVFARTKRHREAGNLLKNELATTFLPDVETWNVLITGYCLA---REPE 111

Query: 313 EAFESLR----SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLAL 368
           EAF  +R     +G  P  K +N ++     +G+    M   +   T+G       Y A+
Sbjct: 112 EAFAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAI 171

Query: 369 LRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH 428
           +   A+   ++ A     +  +E+   T   CT  +  Y                     
Sbjct: 172 VDWLAKNKKIQDA-----VALMEKI--TANGCTPTIATYN-------------------- 204

Query: 429 KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQ 488
                   +++    K   L++A++LL ++  +G  P   TYT L+D LG+ +   EA +
Sbjct: 205 --------ALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYK 256

Query: 489 LLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ-MGPD--DFERIIN 545
           L  +++  G         +L     +AG   K  QA    +    Q   PD      +I+
Sbjct: 257 LFKEMALRGLVLDTVCYTALIRGLLQAG---KIPQASSVYKTMTSQGCVPDVVTLSTMID 313

Query: 546 GLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
           GL   G +  A R+   MEA+G A +E +  ALI
Sbjct: 314 GLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALI 347



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 96/250 (38%), Gaps = 42/250 (16%)

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
           G + S     ALL  FA+    R AG +        F P +E+  +L+  Y  A +P++A
Sbjct: 54  GFQHSVHTGNALLDVFARTKRHREAGNLLKNELATTFLPDVETWNVLITGYCLAREPEEA 113

Query: 417 RS------------------------------------NFDYMIRLGHKPDDRCTASMIA 440
            +                                    +F+     G   D     +++ 
Sbjct: 114 FAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIVD 173

Query: 441 AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
              K   +  A+ L+ ++  +G  P  ATY  L++ L ++  + EA  LL KI + G  P
Sbjct: 174 WLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTP 233

Query: 501 PFKIQVSLCDMYARAGIEKKALQALG-FLEAKKEQMGPDD--FERIINGLLAGGFLQDAQ 557
                 SL D     G EK++ +A   F E     +  D   +  +I GLL  G +  A 
Sbjct: 234 DVVTYTSLID---GLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQAS 290

Query: 558 RVHGLMEAQG 567
            V+  M +QG
Sbjct: 291 SVYKTMTSQG 300



 Score = 39.3 bits (90), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 12/129 (9%)

Query: 219 QPSRIDWINLLDRL--REQNTQ--LYFK-VAELVLSEESFQTNVRDYSKLIDAHAKENCL 273
            P+ + +  L+  L  R Q T+  LYF+ + E     +SF      YS L+D   K   L
Sbjct: 442 SPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSFV-----YSSLVDGLCKSGKL 496

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           E    +  +M  +G V +  T T L+    KA  +D A   F ++R  G  P    YNS+
Sbjct: 497 EGGCMLFDEMERSG-VANSQTRTRLIFHLCKANRVDEAVSLFNAIRKEGM-PHPYAYNSI 554

Query: 334 IMAYVNAGQ 342
           I   + + +
Sbjct: 555 ISTLIKSAK 563


>gi|410109887|gb|AFV61023.1| pentatricopeptide repeat-containing protein 11, partial [Junellia
           succulentifolia]
          Length = 429

 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 120/261 (45%), Gaps = 6/261 (2%)

Query: 218 LQPSRIDWINLLD---RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           L+PS + +  L++   +L + N     K A   +     Q +V  YS LI+   KE+ ++
Sbjct: 171 LRPSVVSFNTLMNGYIKLGDLNEXFRLKKA---MQASGVQPDVYTYSVLINGLCKESKMD 227

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           D   +  +M + G+VP+ VT T L+  + K G +D A E ++ + S    PD   YN++I
Sbjct: 228 DXNELFDEMLDXGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLVTYNTLI 287

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
                 G  K    L+D M   G++  +  Y  L+    + GD+  A +    M  E  +
Sbjct: 288 YGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRXRMIKENIR 347

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
               + T L+    Q G    A      M+ +G KP+      +I  + KK  +     L
Sbjct: 348 LDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKL 407

Query: 455 LLELEKDGFEPGPATYTVLVD 475
           + E+++DG+ P   TY VL++
Sbjct: 408 MKEMQRDGYVPSVVTYNVLMN 428



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/245 (21%), Positives = 113/245 (46%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  ++ L++ + K   L +  R+ K M  +G+ PD+ T +VL++   K   +D   E F
Sbjct: 174 SVVSFNTLMNGYIKLGDLNEXFRLKKAMQASGVQPDVYTYSVLINGLCKESKMDDXNELF 233

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + +   G  P+   + ++I  +   G+  L M +   M++  +      Y  L+    + 
Sbjct: 234 DEMLDXGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLVTYNTLIYGLCKK 293

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           GD++ A  + + M ++  +P   + T L++   + GD + A      MI+   + DD   
Sbjct: 294 GDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRXRMIKENIRLDDVAY 353

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I+   ++     A  +L E+   G +P   TYT++++   +   +    +L+ ++  
Sbjct: 354 TALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQR 413

Query: 496 LGEAP 500
            G  P
Sbjct: 414 DGYVP 418



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/267 (21%), Positives = 114/267 (42%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E  +  ++  ++ L+ +  KE  +  A+ +   + + G+ P +V+   L++ Y K G+L+
Sbjct: 133 ECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLN 192

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
                 +++++ G QPD   Y+ +I       +      L D M+  G+  +   +  L+
Sbjct: 193 EXFRLKKAMQASGVQPDVYTYSVLINGLCKESKMDDXNELFDEMLDXGLVPNGVTFTTLI 252

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               + G V  A +I   M  +   P L +   L+    + GD  QA+   D M   G K
Sbjct: 253 DGHCKNGRVDLAMEIYKQMLSQSLSPDLVTYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK 312

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     ++I    K+  L+ A      + K+        YT L+  L +     +AE++
Sbjct: 313 PDKITYTTLIDGSCKEGDLETAFEYRXRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 372

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAG 516
           L ++  +G  P       + + + + G
Sbjct: 373 LREMLSVGLKPEIGTYTMIINEFCKKG 399



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 63/309 (20%), Positives = 129/309 (41%), Gaps = 6/309 (1%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGI-VPDIVTSTVLVHMYSKAGNLDRAK 312
           ++++  +S +I A+ +   L DA    +   E+   VP      VL H+  K        
Sbjct: 67  RSDIYVFSGIITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHL-MKLKYFKLVW 125

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
             +E     G+      +N ++ ++   G+ +L  S+ D +   G+  S   +  L+  +
Sbjct: 126 GFYEESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGY 185

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + GD+    ++   M+    QP + + ++L+    +    D     FD M+  G  P+ 
Sbjct: 186 IKLGDLNEXFRLKKAMQASGVQPDVYTYSVLINGLCKESKMDDXNELFDEMLDXGLVPNG 245

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               ++I  + K   +D A+ +  ++      P   TY  L+  L +   + +A+ L+ +
Sbjct: 246 VTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLVTYNTLIYGLCKKGDLKQAQDLIDE 305

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAG 550
           +S  G  P      +L D   + G  + A +        KE +  DD  +  +I+GL   
Sbjct: 306 MSMKGLKPDKITYTTLIDGSCKEGDLETAFEYR--XRMIKENIRLDDVAYTALISGLCQE 363

Query: 551 GFLQDAQRV 559
           G   DA+++
Sbjct: 364 GRSVDAEKM 372


>gi|334188438|ref|NP_200395.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332009303|gb|AED96686.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1136

 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 128/307 (41%), Gaps = 16/307 (5%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRD--------YSKLIDAHAK 269
           L PS + +  LLD L         K AE  L+   +    R+        Y+ +ID   K
Sbjct: 404 LTPSEVSYGVLLDGL--------CKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCK 455

Query: 270 ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKV 329
              L++A  +L +M+++GI PDIVT + L++ + K G    AKE    +   G  P+  +
Sbjct: 456 NGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGII 515

Query: 330 YNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389
           Y+++I      G  K  + + + MI  G  R    +  L+ S  + G V  A +    M 
Sbjct: 516 YSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMT 575

Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD 449
            +   P   S   L+  YG +G+  +A S FD M ++GH P      S++    K   L 
Sbjct: 576 SDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLR 635

Query: 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLC 509
           +A   L  L           Y  L+  + +   + +A  L G++ +    P      SL 
Sbjct: 636 EAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLI 695

Query: 510 DMYARAG 516
               R G
Sbjct: 696 SGLCRKG 702



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/347 (21%), Positives = 146/347 (42%), Gaps = 35/347 (10%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  ++ LI+    E   E +  +++KM ++G  P IVT   ++H Y K G    A E  
Sbjct: 232 DVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELL 291

Query: 316 ESLRSHG-----------------------------------FQPDKKVYNSMIMAYVNA 340
           + ++S G                                     P++  YN++I  + N 
Sbjct: 292 DHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNE 351

Query: 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
           G+  +   L++ M++ G+  +   + AL+      G+ + A ++  +M  +   P+  S 
Sbjct: 352 GKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSY 411

Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
            +L++   +  + D AR  +  M R G          MI    K   LD+A+ LL E+ K
Sbjct: 412 GVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSK 471

Query: 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKK 520
           DG +P   TY+ L++   ++     A++++ +I  +G +P   I  +L     R G  K+
Sbjct: 472 DGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKE 531

Query: 521 ALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
           A++    +  +        F  ++  L   G + +A+     M + G
Sbjct: 532 AIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDG 578



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/283 (20%), Positives = 114/283 (40%), Gaps = 4/283 (1%)

Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338
            LK+M +  I PD+ T  +L+++    G+ +++    + +   G+ P    YN+++  Y 
Sbjct: 220 FLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYC 279

Query: 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398
             G+ K  + L+D M + G++     Y  L+    +   +     +   MR     P   
Sbjct: 280 KKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEV 339

Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
           +   L+  +   G    A    + M+  G  P+     ++I  +  +    +AL +   +
Sbjct: 340 TYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMM 399

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
           E  G  P   +Y VL+D L +    + A     ++   G          + D   + G  
Sbjct: 400 EAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFL 459

Query: 519 KKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRV 559
            +A+  L   E  K+ + PD   +  +ING    G  + A+ +
Sbjct: 460 DEAVVLLN--EMSKDGIDPDIVTYSALINGFCKVGRFKTAKEI 500



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 140/337 (41%), Gaps = 6/337 (1%)

Query: 218 LQPSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L P+ + +  L+D  + E N +   K+  ++ ++    + V  Y  L+D   K    + A
Sbjct: 369 LSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEV-SYGVLLDGLCKNAEFDLA 427

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
                +M  NG+    +T T ++    K G LD A      +   G  PD   Y+++I  
Sbjct: 428 RGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALING 487

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           +   G+ K    +V  +   G+  +  IY  L+ +  + G ++ A +I   M +E     
Sbjct: 488 FCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRD 547

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
             +  +LV +  +AG   +A      M   G  P+      +I  YG      KA ++  
Sbjct: 548 HFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFD 607

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
           E+ K G  P   TY  L+  L +   + EAE+ L  +  +  A    +  +L     ++G
Sbjct: 608 EMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSG 667

Query: 517 IEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGG 551
              KA+   G  E  +  + PD   +  +I+GL   G
Sbjct: 668 NLAKAVSLFG--EMVQRSILPDSYTYTSLISGLCRKG 702



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 76/369 (20%), Positives = 147/369 (39%), Gaps = 6/369 (1%)

Query: 215 KELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEE-SF--QTNVRDYSKLIDAHAKEN 271
           K ++ P+ + +  L++    +   L   +A  +L+E  SF    N   ++ LID H  E 
Sbjct: 331 KRMIHPNEVTYNTLINGFSNEGKVL---IASQLLNEMLSFGLSPNHVTFNALIDGHISEG 387

Query: 272 CLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYN 331
             ++A ++   M   G+ P  V+  VL+    K    D A+  +  ++ +G    +  Y 
Sbjct: 388 NFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYT 447

Query: 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391
            MI      G     + L++ M   GI+     Y AL+  F + G  + A +I   +   
Sbjct: 448 GMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRV 507

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
              P     + L+    + G   +A   ++ MI  GH  D      ++ +  K   + +A
Sbjct: 508 GLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEA 567

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
              +  +  DG  P   ++  L++  G      +A  +  +++++G  P F    SL   
Sbjct: 568 EEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKG 627

Query: 512 YARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAAS 571
             + G  ++A + L  L A    +    +  ++  +   G L  A  + G M  +     
Sbjct: 628 LCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPD 687

Query: 572 ERLKVALIS 580
                +LIS
Sbjct: 688 SYTYTSLIS 696



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 87/429 (20%), Positives = 178/429 (41%), Gaps = 25/429 (5%)

Query: 164  KWTEVAEKIHERGEM----ILPEE---PKPITGKCKLITDKILSLEKEEDPSPLLAEWKE 216
            K   +A+ +   GEM    ILP+       I+G C+     I  L  +E      AE + 
Sbjct: 665  KSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKE------AEARG 718

Query: 217  LLQPSRIDWINLLDRLREQN---TQLYFK--VAELVLSEESFQTNVRDYSKLIDAHAKEN 271
             + P+++ +   +D + +       +YF+  +  L  + +   TN      +ID +++  
Sbjct: 719  NVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNA-----MIDGYSRMG 773

Query: 272  CLEDAERILKKM-NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVY 330
             +E    +L +M N+NG  P++ T  +L+H YSK  ++  +   + S+  +G  PDK   
Sbjct: 774  KIEKTNDLLPEMGNQNG-GPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTC 832

Query: 331  NSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRI 390
            +S+++    +   ++G+ ++   I  G+E     +  L+      G++  A  +  +M  
Sbjct: 833  HSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTS 892

Query: 391  EEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDK 450
                   ++C  +V    +     ++R     M + G  P+ R    +I    +   +  
Sbjct: 893  LGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKT 952

Query: 451  ALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCD 510
            A  +  E+      P     + +V  L +    +EA  LL  + ++   P      +L  
Sbjct: 953  AFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMH 1012

Query: 511  MYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAA 570
            +  + G   +AL+    +     ++    +  +I GL A G +  A  ++  M+  GF A
Sbjct: 1013 LCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDGFLA 1072

Query: 571  SERLKVALI 579
            +     ALI
Sbjct: 1073 NATTYKALI 1081



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 113/283 (39%), Gaps = 14/283 (4%)

Query: 284 NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343
           N N  V DI     L+ +Y + G +  + E F  +  +GF P     N+++ + V +G+ 
Sbjct: 160 NSNPSVYDI-----LIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGED 214

Query: 344 KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403
               S +  M+   I      +  L+      G    +  +   M    + PT+ +   +
Sbjct: 215 VSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTV 274

Query: 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM-IAAYGKKNLLDKALNLLLELEKDG 462
           +  Y + G    A    D+M   G   D  CT +M I    + N + K   LL ++ K  
Sbjct: 275 LHWYCKKGRFKAAIELLDHMKSKGVDAD-VCTYNMLIHDLCRSNRIAKGYLLLRDMRKRM 333

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522
             P   TY  L++       +  A QLL ++   G +P      +L D +   G  K+AL
Sbjct: 334 IHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEAL 393

Query: 523 QALGFLEAKKEQMGPDDFERIINGL-------LAGGFLQDAQR 558
           +    +EAK        +  +++GL       LA GF    +R
Sbjct: 394 KMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKR 436



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/239 (22%), Positives = 95/239 (39%), Gaps = 1/239 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+ A  K   L  A  +  +M +  I+PD  T T L+    + G    A    +   
Sbjct: 656 YNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAE 715

Query: 320 SHG-FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
           + G   P+K +Y   +     AGQ K G+   + M   G         A++  +++ G +
Sbjct: 716 ARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKI 775

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
                +   M  +   P L +  +L+  Y +  D   +   +  +I  G  PD     S+
Sbjct: 776 EKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSL 835

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           +    + N+L+  L +L      G E    T+ +L+        IN A  L+  ++ LG
Sbjct: 836 VLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLG 894



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 2/157 (1%)

Query: 215  KELLQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCL 273
            K+ + P    +I L++ L R  + +  F V E +++ +    NV + S ++ A AK    
Sbjct: 927  KQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAE-SAMVRALAKCGKA 985

Query: 274  EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
            ++A  +L+ M +  +VP I + T L+H+  K GN+  A E    + + G + D   YN +
Sbjct: 986  DEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVL 1045

Query: 334  IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
            I      G   L   L + M   G   +   Y AL+R
Sbjct: 1046 ITGLCAKGDMALAFELYEEMKGDGFLANATTYKALIR 1082



 Score = 43.5 bits (101), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 46/226 (20%), Positives = 98/226 (43%), Gaps = 12/226 (5%)

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
            +Y  L+R + + G ++ + +I  +M +  F P++ +C  ++ +  ++G+     S    
Sbjct: 164 SVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKE 223

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
           M++    PD      +I     +   +K+  L+ ++EK G+ P   TY  ++ W  +   
Sbjct: 224 MLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGR 283

Query: 483 INEAEQLLGKISELG-EAPPFKIQVSLCDMYARAGIEKKALQALGFL---EAKKEQMGPD 538
              A +LL  +   G +A      + + D+     I K      G+L   + +K  + P+
Sbjct: 284 FKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAK------GYLLLRDMRKRMIHPN 337

Query: 539 D--FERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQ 582
           +  +  +ING    G +  A ++   M + G + +     ALI   
Sbjct: 338 EVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGH 383


>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
 gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
          Length = 600

 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 147/337 (43%), Gaps = 4/337 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + +  F  N   Y+ L+        + DA+ + ++M + G  PD+VT   L+H + K G 
Sbjct: 76  MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGK 135

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           LD A + F+     GF PD   YN++I  +  A +      ++  M++  +      Y +
Sbjct: 136 LDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLVPDVVTYNS 195

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYG-QAGDPDQARSNFDYMIRL 426
           L+    + G V  A     ++  + F P + + + L+     +    + AR   + M+  
Sbjct: 196 LVNGLCKNGRVDEARM---LIVDKGFSPNVITYSTLISGLCRELRRLESARQLLEKMVLN 252

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G KPD     ++I    ++  + +AL L   + + G+EP   TY +L+D L +   +NEA
Sbjct: 253 GCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEA 312

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
            +L   + + G  P         D   +AG  + AL  L  ++ K           +ING
Sbjct: 313 FELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVING 372

Query: 547 LLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQT 583
           L     + +A+ +   MEA+G + +      LI  Q 
Sbjct: 373 LCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQC 409



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 131/308 (42%), Gaps = 4/308 (1%)

Query: 244 AELVLSEESFQTNVRDYSKLIDAHAKE-NCLEDAERILKKMNENGIVPDIVTSTVLVHMY 302
           A +++ ++ F  NV  YS LI    +E   LE A ++L+KM  NG  PDIV+   L+H  
Sbjct: 209 ARMLIVDKGFSPNVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGL 268

Query: 303 SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE 362
           ++   +  A + F S+   G++P+   YN +I   +   +      L   ++  G+E   
Sbjct: 269 AREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDA 328

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
             Y   +    + G V  A  +   M  +   P + S   ++    +    D+A      
Sbjct: 329 ITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSG 388

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ- 481
           M   G  P+     ++I    +     KA+    E+ K G +P   TY +LVD L + + 
Sbjct: 389 MEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQ 448

Query: 482 --LINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD 539
              I EA  L   + E G  P      +L D   +AG    A + LG +EAK        
Sbjct: 449 EGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYT 508

Query: 540 FERIINGL 547
           +  +I+GL
Sbjct: 509 YNSLISGL 516



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 127/281 (45%), Gaps = 3/281 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L +   + +   Y+  ID   K   +EDA  +LK M+E G VPD+V+   +++   K   
Sbjct: 319 LVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKR 378

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D A+     + + G  P+   +N++I     AG+ K  M+    M+  G++ +   Y  
Sbjct: 379 VDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNI 438

Query: 368 LLRSFAQC---GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
           L+    +    G ++ A  + + M  +   P + + + L++  G+AG  D AR     M 
Sbjct: 439 LVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAME 498

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
             G  P+     S+I+     + +D+AL L + + + G  P   TY  ++  L + ++++
Sbjct: 499 AKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQEMVD 558

Query: 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
           +A  L     E G  P   +  SL D         +AL+ L
Sbjct: 559 KALALFDGSLEAGVVPTSGMYFSLIDGLCAVARVDEALKLL 599



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 125/277 (45%), Gaps = 5/277 (1%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           +E A R ++++   G+  DI T  + +    +A  +  A+  F+ +R HGF P++  YN+
Sbjct: 32  IEKAHRFVEQLLVKGLC-DISTFNIYISGLCRASRIGDAQTVFDGMRKHGFWPNRITYNA 90

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           ++    N G+     +L + MI +G       Y  LL  F + G +  A +I +      
Sbjct: 91  LLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRG 150

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
           F P + +   L+  + +A   D+A+     M+     PD     S++    K   +D+A 
Sbjct: 151 FVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEAR 210

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGR-LQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
            L+++    GF P   TY+ L+  L R L+ +  A QLL K+   G  P      +L   
Sbjct: 211 MLIVD---KGFSPNVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHG 267

Query: 512 YARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLL 548
            AR     +AL+  G +  +  +     +  +I+GLL
Sbjct: 268 LAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLL 304



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 123/283 (43%), Gaps = 11/283 (3%)

Query: 215 KELLQPSRIDWINLLDRL----REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKE 270
           K  L+P  I +   +D L    R ++  L  K     + E+    +V  ++ +I+   KE
Sbjct: 321 KHGLEPDAITYTVFIDGLCKAGRVEDALLMLKD----MDEKGCVPDVVSHNAVINGLCKE 376

Query: 271 NCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVY 330
             +++AE +L  M   G  P+ ++   L+    +AG   +A   F+ +   G +P    Y
Sbjct: 377 KRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTY 436

Query: 331 NSMIMAYVNA---GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNI 387
           N ++     A   G+ K  ++L D MI  G       Y AL+    + G +  A ++   
Sbjct: 437 NILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGA 496

Query: 388 MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447
           M  +   P + +   L+         D+A   F  M+  G  PD     ++I+A  K+ +
Sbjct: 497 MEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQEM 556

Query: 448 LDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           +DKAL L     + G  P    Y  L+D L  +  ++EA +LL
Sbjct: 557 VDKALALFDGSLEAGVVPTSGMYFSLIDGLCAVARVDEALKLL 599



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 7/166 (4%)

Query: 211 LAEWKELLQ----PSRIDWINLLDRLREQNTQLYFKVAELVLS---EESFQTNVRDYSKL 263
           +  +KE+L+    P+ + +  L+D L +   +   K A  +     E+    +V  YS L
Sbjct: 418 MTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSAL 477

Query: 264 IDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGF 323
           ID   K   L+DA R+L  M   G +P++ T   L+        +D A E F ++   G 
Sbjct: 478 IDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGC 537

Query: 324 QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            PD   Y ++I A          ++L D  + +G+  +  +Y +L+
Sbjct: 538 VPDTITYGTIISALCKQEMVDKALALFDGSLEAGVVPTSGMYFSLI 583


>gi|8843735|dbj|BAA97283.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1274

 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 128/307 (41%), Gaps = 16/307 (5%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRD--------YSKLIDAHAK 269
           L PS + +  LLD L         K AE  L+   +    R+        Y+ +ID   K
Sbjct: 364 LTPSEVSYGVLLDGL--------CKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCK 415

Query: 270 ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKV 329
              L++A  +L +M+++GI PDIVT + L++ + K G    AKE    +   G  P+  +
Sbjct: 416 NGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGII 475

Query: 330 YNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389
           Y+++I      G  K  + + + MI  G  R    +  L+ S  + G V  A +    M 
Sbjct: 476 YSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMT 535

Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD 449
            +   P   S   L+  YG +G+  +A S FD M ++GH P      S++    K   L 
Sbjct: 536 SDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLR 595

Query: 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLC 509
           +A   L  L           Y  L+  + +   + +A  L G++ +    P      SL 
Sbjct: 596 EAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLI 655

Query: 510 DMYARAG 516
               R G
Sbjct: 656 SGLCRKG 662



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/347 (21%), Positives = 146/347 (42%), Gaps = 35/347 (10%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  ++ LI+    E   E +  +++KM ++G  P IVT   ++H Y K G    A E  
Sbjct: 192 DVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELL 251

Query: 316 ESLRSHG-----------------------------------FQPDKKVYNSMIMAYVNA 340
           + ++S G                                     P++  YN++I  + N 
Sbjct: 252 DHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNE 311

Query: 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
           G+  +   L++ M++ G+  +   + AL+      G+ + A ++  +M  +   P+  S 
Sbjct: 312 GKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSY 371

Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
            +L++   +  + D AR  +  M R G          MI    K   LD+A+ LL E+ K
Sbjct: 372 GVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSK 431

Query: 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKK 520
           DG +P   TY+ L++   ++     A++++ +I  +G +P   I  +L     R G  K+
Sbjct: 432 DGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKE 491

Query: 521 ALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
           A++    +  +        F  ++  L   G + +A+     M + G
Sbjct: 492 AIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDG 538



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/283 (20%), Positives = 114/283 (40%), Gaps = 4/283 (1%)

Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338
            LK+M +  I PD+ T  +L+++    G+ +++    + +   G+ P    YN+++  Y 
Sbjct: 180 FLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYC 239

Query: 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398
             G+ K  + L+D M + G++     Y  L+    +   +     +   MR     P   
Sbjct: 240 KKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEV 299

Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
           +   L+  +   G    A    + M+  G  P+     ++I  +  +    +AL +   +
Sbjct: 300 TYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMM 359

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
           E  G  P   +Y VL+D L +    + A     ++   G          + D   + G  
Sbjct: 360 EAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFL 419

Query: 519 KKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRV 559
            +A+  L   E  K+ + PD   +  +ING    G  + A+ +
Sbjct: 420 DEAVVLLN--EMSKDGIDPDIVTYSALINGFCKVGRFKTAKEI 460



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 140/337 (41%), Gaps = 6/337 (1%)

Query: 218 LQPSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L P+ + +  L+D  + E N +   K+  ++ ++    + V  Y  L+D   K    + A
Sbjct: 329 LSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEV-SYGVLLDGLCKNAEFDLA 387

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
                +M  NG+    +T T ++    K G LD A      +   G  PD   Y+++I  
Sbjct: 388 RGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALING 447

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           +   G+ K    +V  +   G+  +  IY  L+ +  + G ++ A +I   M +E     
Sbjct: 448 FCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRD 507

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
             +  +LV +  +AG   +A      M   G  P+      +I  YG      KA ++  
Sbjct: 508 HFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFD 567

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
           E+ K G  P   TY  L+  L +   + EAE+ L  +  +  A    +  +L     ++G
Sbjct: 568 EMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSG 627

Query: 517 IEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGG 551
              KA+   G  E  +  + PD   +  +I+GL   G
Sbjct: 628 NLAKAVSLFG--EMVQRSILPDSYTYTSLISGLCRKG 662



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 76/369 (20%), Positives = 147/369 (39%), Gaps = 6/369 (1%)

Query: 215 KELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEE-SF--QTNVRDYSKLIDAHAKEN 271
           K ++ P+ + +  L++    +   L   +A  +L+E  SF    N   ++ LID H  E 
Sbjct: 291 KRMIHPNEVTYNTLINGFSNEGKVL---IASQLLNEMLSFGLSPNHVTFNALIDGHISEG 347

Query: 272 CLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYN 331
             ++A ++   M   G+ P  V+  VL+    K    D A+  +  ++ +G    +  Y 
Sbjct: 348 NFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYT 407

Query: 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391
            MI      G     + L++ M   GI+     Y AL+  F + G  + A +I   +   
Sbjct: 408 GMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRV 467

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
              P     + L+    + G   +A   ++ MI  GH  D      ++ +  K   + +A
Sbjct: 468 GLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEA 527

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
              +  +  DG  P   ++  L++  G      +A  +  +++++G  P F    SL   
Sbjct: 528 EEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKG 587

Query: 512 YARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAAS 571
             + G  ++A + L  L A    +    +  ++  +   G L  A  + G M  +     
Sbjct: 588 LCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPD 647

Query: 572 ERLKVALIS 580
                +LIS
Sbjct: 648 SYTYTSLIS 656



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 87/429 (20%), Positives = 178/429 (41%), Gaps = 25/429 (5%)

Query: 164  KWTEVAEKIHERGEM----ILPEE---PKPITGKCKLITDKILSLEKEEDPSPLLAEWKE 216
            K   +A+ +   GEM    ILP+       I+G C+     I  L  +E      AE + 
Sbjct: 625  KSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKE------AEARG 678

Query: 217  LLQPSRIDWINLLDRLREQN---TQLYFK--VAELVLSEESFQTNVRDYSKLIDAHAKEN 271
             + P+++ +   +D + +       +YF+  +  L  + +   TN      +ID +++  
Sbjct: 679  NVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNA-----MIDGYSRMG 733

Query: 272  CLEDAERILKKM-NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVY 330
             +E    +L +M N+NG  P++ T  +L+H YSK  ++  +   + S+  +G  PDK   
Sbjct: 734  KIEKTNDLLPEMGNQNG-GPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTC 792

Query: 331  NSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRI 390
            +S+++    +   ++G+ ++   I  G+E     +  L+      G++  A  +  +M  
Sbjct: 793  HSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTS 852

Query: 391  EEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDK 450
                   ++C  +V    +     ++R     M + G  P+ R    +I    +   +  
Sbjct: 853  LGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKT 912

Query: 451  ALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCD 510
            A  +  E+      P     + +V  L +    +EA  LL  + ++   P      +L  
Sbjct: 913  AFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMH 972

Query: 511  MYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAA 570
            +  + G   +AL+    +     ++    +  +I GL A G +  A  ++  M+  GF A
Sbjct: 973  LCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDGFLA 1032

Query: 571  SERLKVALI 579
            +     ALI
Sbjct: 1033 NATTYKALI 1041



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 113/283 (39%), Gaps = 14/283 (4%)

Query: 284 NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343
           N N  V DI     L+ +Y + G +  + E F  +  +GF P     N+++ + V +G+ 
Sbjct: 120 NSNPSVYDI-----LIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGED 174

Query: 344 KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403
               S +  M+   I      +  L+      G    +  +   M    + PT+ +   +
Sbjct: 175 VSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTV 234

Query: 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM-IAAYGKKNLLDKALNLLLELEKDG 462
           +  Y + G    A    D+M   G   D  CT +M I    + N + K   LL ++ K  
Sbjct: 235 LHWYCKKGRFKAAIELLDHMKSKGVDAD-VCTYNMLIHDLCRSNRIAKGYLLLRDMRKRM 293

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522
             P   TY  L++       +  A QLL ++   G +P      +L D +   G  K+AL
Sbjct: 294 IHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEAL 353

Query: 523 QALGFLEAKKEQMGPDDFERIINGL-------LAGGFLQDAQR 558
           +    +EAK        +  +++GL       LA GF    +R
Sbjct: 354 KMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKR 396



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/239 (22%), Positives = 95/239 (39%), Gaps = 1/239 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+ A  K   L  A  +  +M +  I+PD  T T L+    + G    A    +   
Sbjct: 616 YNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAE 675

Query: 320 SHG-FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
           + G   P+K +Y   +     AGQ K G+   + M   G         A++  +++ G +
Sbjct: 676 ARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKI 735

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
                +   M  +   P L +  +L+  Y +  D   +   +  +I  G  PD     S+
Sbjct: 736 EKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSL 795

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           +    + N+L+  L +L      G E    T+ +L+        IN A  L+  ++ LG
Sbjct: 796 VLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLG 854



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 2/157 (1%)

Query: 215  KELLQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCL 273
            K+ + P    +I L++ L R  + +  F V E +++ +    NV + S ++ A AK    
Sbjct: 887  KQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAE-SAMVRALAKCGKA 945

Query: 274  EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
            ++A  +L+ M +  +VP I + T L+H+  K GN+  A E    + + G + D   YN +
Sbjct: 946  DEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVL 1005

Query: 334  IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
            I      G   L   L + M   G   +   Y AL+R
Sbjct: 1006 ITGLCAKGDMALAFELYEEMKGDGFLANATTYKALIR 1042



 Score = 43.9 bits (102), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 46/226 (20%), Positives = 98/226 (43%), Gaps = 12/226 (5%)

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
            +Y  L+R + + G ++ + +I  +M +  F P++ +C  ++ +  ++G+     S    
Sbjct: 124 SVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKE 183

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
           M++    PD      +I     +   +K+  L+ ++EK G+ P   TY  ++ W  +   
Sbjct: 184 MLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGR 243

Query: 483 INEAEQLLGKISELG-EAPPFKIQVSLCDMYARAGIEKKALQALGFL---EAKKEQMGPD 538
              A +LL  +   G +A      + + D+     I K      G+L   + +K  + P+
Sbjct: 244 FKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAK------GYLLLRDMRKRMIHPN 297

Query: 539 D--FERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQ 582
           +  +  +ING    G +  A ++   M + G + +     ALI   
Sbjct: 298 EVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGH 343


>gi|356577532|ref|XP_003556878.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like [Glycine max]
          Length = 932

 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 78/359 (21%), Positives = 148/359 (41%), Gaps = 12/359 (3%)

Query: 238 QLYFKVAEL--------VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIV 289
            LY KV ++        ++     + N++ YS LI+   K     +A  + +   ++G+ 
Sbjct: 467 NLYTKVGKVSKALEISKMMKMSGIKHNMKTYSMLINGFLKLKDWANAFSVFEDFTKDGLK 526

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL 349
           PD+V    ++  +   GN+DRA      ++    +P  + +  +I  +  AG+ +  + +
Sbjct: 527 PDVVLYNNIITAFCGMGNMDRAICMVRQMQKERHRPTTRTFLPIIHGFARAGEMRRALEI 586

Query: 350 VDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409
            DMM  SG   +   Y AL+    +   +  A  I + M +    P   + T L++ Y  
Sbjct: 587 FDMMRRSGCIPTVHTYNALILGLVEKRQMTKAVAILDEMNVAGVGPNEHTYTTLMQGYAS 646

Query: 410 AGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPAT 469
            GD ++A   F  +   G + D     +++ +  K   +  AL +  E+           
Sbjct: 647 LGDTEKAFQYFTVLRNEGLEIDVYTYEALLKSCCKSGRMQSALAVTKEMSAKNIPRNTFV 706

Query: 470 YTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLE 529
           Y +L+D   R   + EA  L+ ++ + G  P      S  +   +AG  +KA + +  +E
Sbjct: 707 YNILIDGWARRGDVWEAADLMQQMRKEGLLPDIHTYTSFINACCKAGDMQKATEIIQEME 766

Query: 530 AKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGF----AASERLKVALISSQTF 584
           A   +     +  +ING       + A      M+  GF    A    L  +L+S  TF
Sbjct: 767 ASGIKPNLKTYTTLINGWARASMPEKALSCFEEMKLAGFKPDKAVYHCLVTSLLSRATF 825



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 132/311 (42%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N   Y  +I AH +   ++ AE ++++M E GI   I     ++  Y+  GN ++    F
Sbjct: 388 NAVIYGGIIYAHCQICNMDRAEALVREMEEQGIDAPIDIYHTMMDGYTMIGNEEKCLIVF 447

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + L+  GF P    Y  +I  Y   G+    + +  MM  SGI+ + + Y  L+  F + 
Sbjct: 448 DRLKECGFFPSVISYGCLINLYTKVGKVSKALEISKMMKMSGIKHNMKTYSMLINGFLKL 507

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
            D   A  +      +  +P +     ++ A+   G+ D+A      M +  H+P  R  
Sbjct: 508 KDWANAFSVFEDFTKDGLKPDVVLYNNIITAFCGMGNMDRAICMVRQMQKERHRPTTRTF 567

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +I  + +   + +AL +   + + G  P   TY  L+  L   + + +A  +L +++ 
Sbjct: 568 LPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTYNALILGLVEKRQMTKAVAILDEMNV 627

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
            G  P      +L   YA  G  +KA Q    L  +  ++    +E ++      G +Q 
Sbjct: 628 AGVGPNEHTYTTLMQGYASLGDTEKAFQYFTVLRNEGLEIDVYTYEALLKSCCKSGRMQS 687

Query: 556 AQRVHGLMEAQ 566
           A  V   M A+
Sbjct: 688 ALAVTKEMSAK 698



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/320 (21%), Positives = 134/320 (41%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS LI A+A    +E+A   ++KM E GI   IVT +++V  ++K GN D A   FE  +
Sbjct: 322 YSSLIHAYAVGRDMEEALHCVRKMKEEGIEMTIVTYSIIVGGFAKMGNADAADHWFEEAK 381

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
                 +  +Y  +I A+          +LV  M   GI+   +IY  ++  +   G+  
Sbjct: 382 EKLPSLNAVIYGGIIYAHCQICNMDRAEALVREMEEQGIDAPIDIYHTMMDGYTMIGNEE 441

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
               + + ++   F P++ S   L+  Y + G   +A      M   G K + +  + +I
Sbjct: 442 KCLIVFDRLKECGFFPSVISYGCLINLYTKVGKVSKALEISKMMKMSGIKHNMKTYSMLI 501

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             + K      A ++  +  KDG +P    Y  ++     +  ++ A  ++ ++ +    
Sbjct: 502 NGFLKLKDWANAFSVFEDFTKDGLKPDVVLYNNIITAFCGMGNMDRAICMVRQMQKERHR 561

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P  +  + +   +ARAG  ++AL+    +           +  +I GL+    +  A  +
Sbjct: 562 PTTRTFLPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTYNALILGLVEKRQMTKAVAI 621

Query: 560 HGLMEAQGFAASERLKVALI 579
              M   G   +E     L+
Sbjct: 622 LDEMNVAGVGPNEHTYTTLM 641



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/326 (20%), Positives = 129/326 (39%), Gaps = 35/326 (10%)

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           ++V  Y + G++  A++ FES+R+ G +P   VY+S+I AY      +  +  V  M   
Sbjct: 289 LMVKYYGRRGDMHHARQTFESMRARGIEPSSHVYSSLIHAYAVGRDMEEALHCVRKMKEE 348

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAG--------------------------QITNIMRI 390
           GIE +   Y  ++  FA+ G+   A                           QI N+ R 
Sbjct: 349 GIEMTIVTYSIIVGGFAKMGNADAADHWFEEAKEKLPSLNAVIYGGIIYAHCQICNMDRA 408

Query: 391 EEFQPTLESCTL---------LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441
           E     +E   +         +++ Y   G+ ++    FD +   G  P       +I  
Sbjct: 409 EALVREMEEQGIDAPIDIYHTMMDGYTMIGNEEKCLIVFDRLKECGFFPSVISYGCLINL 468

Query: 442 YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
           Y K   + KAL +   ++  G +    TY++L++   +L+    A  +    ++ G  P 
Sbjct: 469 YTKVGKVSKALEISKMMKMSGIKHNMKTYSMLINGFLKLKDWANAFSVFEDFTKDGLKPD 528

Query: 502 FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHG 561
             +  ++   +   G   +A+  +  ++ ++ +     F  II+G    G ++ A  +  
Sbjct: 529 VVLYNNIITAFCGMGNMDRAICMVRQMQKERHRPTTRTFLPIIHGFARAGEMRRALEIFD 588

Query: 562 LMEAQGFAASERLKVALISSQTFNRQ 587
           +M   G   +     ALI      RQ
Sbjct: 589 MMRRSGCIPTVHTYNALILGLVEKRQ 614



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 74/174 (42%), Gaps = 37/174 (21%)

Query: 384 ITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYG 443
           +T   RI+  +P  +   L+V+ YG+ GD   AR  F+ M   G +P     +S+I AY 
Sbjct: 273 VTAFERIK--KPARKEYGLMVKYYGRRGDMHHARQTFESMRARGIEPSSHVYSSLIHAYA 330

Query: 444 KKNLLDKALNLLLELEKDGFEPGPATYTVLV-------------DWL------------- 477
               +++AL+ + +++++G E    TY+++V              W              
Sbjct: 331 VGRDMEEALHCVRKMKEEGIEMTIVTYSIIVGGFAKMGNADAADHWFEEAKEKLPSLNAV 390

Query: 478 -------GRLQLIN--EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522
                     Q+ N   AE L+ ++ E G   P  I  ++ D Y   G E+K L
Sbjct: 391 IYGGIIYAHCQICNMDRAEALVREMEEQGIDAPIDIYHTMMDGYTMIGNEEKCL 444


>gi|242055653|ref|XP_002456972.1| hypothetical protein SORBIDRAFT_03g046570 [Sorghum bicolor]
 gi|241928947|gb|EES02092.1| hypothetical protein SORBIDRAFT_03g046570 [Sorghum bicolor]
          Length = 821

 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 136/318 (42%), Gaps = 4/318 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +S+E        Y+ +ID   KE  LE+AE++L+    +G  PD+   + L+H + K GN
Sbjct: 290 ISQERVPIEAFAYNMVIDGLCKEMKLEEAEKVLEIKTRHGSTPDLYGYSYLIHSHCKMGN 349

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L++A    E + SHG + +  +  S++      G     +         G+     +Y  
Sbjct: 350 LEKAWYHIEDMVSHGIEINCHIVGSLLQCLRKLGMISEVIVHFQKFRDLGLHLDGVLYNV 409

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
            + ++ + G++  A ++ N M      P     T L+  Y   G+ + A   F+ M++  
Sbjct: 410 AMDAYCKLGNMNEAVKLLNEMMAGGLVPDKIHYTCLINGYCLKGETENAWQVFEQMLKAN 469

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            KPD      + + Y +  L+ K  +LL  +   G EP   TY + +    R   ++EAE
Sbjct: 470 IKPDVVTYNILSSGYSRNGLVMKVFDLLEHMMDQGLEPNSLTYGIAIAGFCRGGNLSEAE 529

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF--ERIIN 545
            L   + E G      +  S+   Y  +G    A     FL   K+    D     ++IN
Sbjct: 530 VLFNIVEEKGIDNIDVLYSSMVCGYLHSGWTDHAYML--FLRVAKQGNMVDHLSCSKLIN 587

Query: 546 GLLAGGFLQDAQRVHGLM 563
           GL     +Q+A  V  +M
Sbjct: 588 GLCRDEKVQEASTVCSMM 605



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 104/241 (43%), Gaps = 21/241 (8%)

Query: 233 REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDI 292
           R++  Q    V  ++L E++   +V  YSKLI A+ +   + +A      M E G+  D+
Sbjct: 591 RDEKVQEASTVCSMML-EKNVVPHVISYSKLISAYCQSRDMRNAHLWFHDMVERGL-SDV 648

Query: 293 VTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDM 352
              T+L++ Y K G L  A E F  + + G +PD   Y  ++  ++     +    +   
Sbjct: 649 TAYTILMNGYCKVGQLQEACELFVQMVNLGIKPDVVAYTVLLDGHLKETLQQGWQGIAKE 708

Query: 353 MITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGD 412
             T  +    ++ L+ ++                     E +P +   T+L+    +A  
Sbjct: 709 RRTFFLRTKHKVLLSSMKEM-------------------EIEPDVTCYTVLIYGQCKAEY 749

Query: 413 PDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTV 472
            ++AR  FD M+  G  PD     ++I  Y  +  + KA +L  E+   G +P   +++V
Sbjct: 750 LEEARGLFDEMLAKGLTPDVDAYTTLINGYCSQGEIAKAEDLFQEMIDKGMKPDVLSFSV 809

Query: 473 L 473
           L
Sbjct: 810 L 810



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 94/218 (43%), Gaps = 6/218 (2%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+  +DA+ K   + +A ++L +M   G+VPD +  T L++ Y   G  + A + FE + 
Sbjct: 407 YNVAMDAYCKLGNMNEAVKLLNEMMAGGLVPDKIHYTCLINGYCLKGETENAWQVFEQML 466

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
               +PD   YN +   Y   G       L++ M+  G+E +   Y   +  F + G++ 
Sbjct: 467 KANIKPDVVTYNILSSGYSRNGLVMKVFDLLEHMMDQGLEPNSLTYGIAIAGFCRGGNLS 526

Query: 380 GAGQITNIMR---IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
            A  + NI+    I+       S   +V  Y  +G  D A   F  + + G+  D    +
Sbjct: 527 EAEVLFNIVEEKGIDNIDVLYSS---MVCGYLHSGWTDHAYMLFLRVAKQGNMVDHLSCS 583

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
            +I    +   + +A  +   + +    P   +Y+ L+
Sbjct: 584 KLINGLCRDEKVQEASTVCSMMLEKNVVPHVISYSKLI 621



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 78/373 (20%), Positives = 151/373 (40%), Gaps = 56/373 (15%)

Query: 218 LQPSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L P +I +  L++    +  T+  ++V E +L + + + +V  Y+ L   +++   +   
Sbjct: 435 LVPDKIHYTCLINGYCLKGETENAWQVFEQML-KANIKPDVVTYNILSSGYSRNGLVMKV 493

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
             +L+ M + G+ P+ +T  + +  + + GNL  A+  F  +   G      +Y+SM+  
Sbjct: 494 FDLLEHMMDQGLEPNSLTYGIAIAGFCRGGNLSEAEVLFNIVEEKGIDNIDVLYSSMVCG 553

Query: 337 YVNAGQPKLGM----------SLVDMM----ITSGIERSEEI------------------ 364
           Y+++G                ++VD +    + +G+ R E++                  
Sbjct: 554 YLHSGWTDHAYMLFLRVAKQGNMVDHLSCSKLINGLCRDEKVQEASTVCSMMLEKNVVPH 613

Query: 365 ---YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421
              Y  L+ ++ Q  D+R A    + M +E     + + T+L+  Y + G   +A   F 
Sbjct: 614 VISYSKLISAYCQSRDMRNAHLWFHDM-VERGLSDVTAYTILMNGYCKVGQLQEACELFV 672

Query: 422 YMIRLGHKPDDRCTASMIAAYGKKN----------------LLDKALNLLLELEKDGFEP 465
            M+ LG KPD      ++  + K+                 L  K   LL  +++   EP
Sbjct: 673 QMVNLGIKPDVVAYTVLLDGHLKETLQQGWQGIAKERRTFFLRTKHKVLLSSMKEMEIEP 732

Query: 466 GPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
               YTVL+    + + + EA  L  ++   G  P      +L + Y   G   KA    
Sbjct: 733 DVTCYTVLIYGQCKAEYLEEARGLFDEMLAKGLTPDVDAYTTLINGYCSQGEIAKAEDL- 791

Query: 526 GFLEAKKEQMGPD 538
            F E   + M PD
Sbjct: 792 -FQEMIDKGMKPD 803



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 63/318 (19%), Positives = 124/318 (38%), Gaps = 15/318 (4%)

Query: 187 ITGKCKLI----TDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFK 242
           I G CK +     +K+L ++     +P L  +  L+  S     NL         + ++ 
Sbjct: 306 IDGLCKEMKLEEAEKVLEIKTRHGSTPDLYGYSYLIH-SHCKMGNL--------EKAWYH 356

Query: 243 VAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMY 302
           + ++V      + N      L+    K   + +     +K  + G+  D V   V +  Y
Sbjct: 357 IEDMV--SHGIEINCHIVGSLLQCLRKLGMISEVIVHFQKFRDLGLHLDGVLYNVAMDAY 414

Query: 303 SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE 362
            K GN++ A +    + + G  PDK  Y  +I  Y   G+ +    + + M+ + I+   
Sbjct: 415 CKLGNMNEAVKLLNEMMAGGLVPDKIHYTCLINGYCLKGETENAWQVFEQMLKANIKPDV 474

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
             Y  L   +++ G V     +   M  +  +P   +  + +  + + G+  +A   F+ 
Sbjct: 475 VTYNILSSGYSRNGLVMKVFDLLEHMMDQGLEPNSLTYGIAIAGFCRGGNLSEAEVLFNI 534

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
           +   G    D   +SM+  Y      D A  L L + K G      + + L++ L R + 
Sbjct: 535 VEEKGIDNIDVLYSSMVCGYLHSGWTDHAYMLFLRVAKQGNMVDHLSCSKLINGLCRDEK 594

Query: 483 INEAEQLLGKISELGEAP 500
           + EA  +   + E    P
Sbjct: 595 VQEASTVCSMMLEKNVVP 612


>gi|75194072|sp|Q9S7R4.1|PP125_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g74900, mitochondrial; AltName: Full=Protein
           ORGANELLE TRANSCRIPT PROCESSING DEFECT 43; Flags:
           Precursor
 gi|5882733|gb|AAD55286.1|AC008263_17 Contains a PF|01535 DUF17 domain [Arabidopsis thaliana]
 gi|12323885|gb|AAG51911.1|AC013258_5 hypothetical protein; 69434-67986 [Arabidopsis thaliana]
          Length = 482

 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 125/266 (46%), Gaps = 8/266 (3%)

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           + A ++   M+E+G   D+ +   ++ +  K+  +++A E F +LR   F  D   YN +
Sbjct: 143 DKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGR-FSVDTVTYNVI 201

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           +  +    +    + ++  M+  GI  +   Y  +L+ F + G +R A +    M+  + 
Sbjct: 202 LNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDC 261

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
           +  + + T +V  +G AG+  +AR+ FD MIR G  P      +MI    KK+ ++ A+ 
Sbjct: 262 EIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVV 321

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
           +  E+ + G+EP   TY VL+  L      +  E+L+ ++   G  P F+    +   Y+
Sbjct: 322 MFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYS 381

Query: 514 RAGIEKKALQALGFLEAKKEQMGPDD 539
                +KAL          E+MG  D
Sbjct: 382 ECSEVEKALGLF-------EKMGSGD 400



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 99/223 (44%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F  +   Y+ +++          A  +LK+M E GI P++ T   ++  + +AG +  A 
Sbjct: 191 FSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAW 250

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           E F  ++    + D   Y +++  +  AG+ K   ++ D MI  G+  S   Y A+++  
Sbjct: 251 EFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVL 310

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            +  +V  A  +   M    ++P + +  +L+     AG+  +       M   G +P+ 
Sbjct: 311 CKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNF 370

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
           +    MI  Y + + ++KAL L  ++      P   TY +L+ 
Sbjct: 371 QTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILIS 413



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/233 (21%), Positives = 98/233 (42%), Gaps = 3/233 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E     N+  Y+ ++    +   +  A     +M +     D+VT T +VH +  AG 
Sbjct: 221 MVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGE 280

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           + RA+  F+ +   G  P    YN+MI         +  + + + M+  G E +   Y  
Sbjct: 281 IKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNV 340

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+R     G+     ++   M  E  +P  ++  +++  Y +  + ++A   F+ M    
Sbjct: 341 LIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGD 400

Query: 428 HKPD-DRCTASMIAAYGKKNLLDKAL--NLLLELEKDGFEPGPATYTVLVDWL 477
             P+ D     +   + +K   D  +   LLLE+ + GF P   T+  +++ L
Sbjct: 401 CLPNLDTYNILISGMFVRKRSEDMVVAGKLLLEMVERGFIPRKFTFNRVLNGL 453



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 84/185 (45%), Gaps = 10/185 (5%)

Query: 232 LREQNTQL--YFKVAELVLSEESF--------QTNVRDYSKLIDAHAKENCLEDAERILK 281
           L   NT L  +F+  ++  + E F        + +V  Y+ ++        ++ A  +  
Sbjct: 230 LTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFD 289

Query: 282 KMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAG 341
           +M   G++P + T   ++ +  K  N++ A   FE +   G++P+   YN +I    +AG
Sbjct: 290 EMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAG 349

Query: 342 QPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCT 401
           +   G  L+  M   G E + + Y  ++R +++C +V  A  +   M   +  P L++  
Sbjct: 350 EFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYN 409

Query: 402 LLVEA 406
           +L+  
Sbjct: 410 ILISG 414


>gi|414878622|tpg|DAA55753.1| TPA: hypothetical protein ZEAMMB73_281441 [Zea mays]
          Length = 573

 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 149/354 (42%), Gaps = 18/354 (5%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +S+E        Y+ +ID   KE  L++AE++L+    +G  PD+ + + L+H + K GN
Sbjct: 42  ISQERVPIEAMAYNMVIDGLCKEMKLKEAEKVLEIKTRHGSAPDLYSYSYLIHSHCKMGN 101

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS-------GIER 360
           L++A    E + SHG +      N  I+AY+     KLGM  V  +I         G+  
Sbjct: 102 LEKAWYHVEDMVSHGIEI-----NCYIVAYLLQCLRKLGM--VSEVIVHFQKFRDLGVHL 154

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
              +Y   + ++ + G++  A ++ N M      P     T L+  Y   G+ + A   F
Sbjct: 155 DGVLYNIAMDAYCKLGNMNEAVKLLNEMMAGSLVPDKIHYTCLINGYCLKGETENAWQVF 214

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
           + M++   KPD      + + Y +  L+ K  ++L  +   G EP   TY + +    R 
Sbjct: 215 EEMLKANIKPDVVTYNILASGYSRNGLVMKVFDILEHMMDQGLEPNSLTYGIAIAGFCRG 274

Query: 481 QLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF 540
             ++EAE L   + E G      +  S+   Y  +G    A     FL   K+    D  
Sbjct: 275 GNLSEAEVLFNIVEERGIDNINVLYGSMVCGYLHSGWTDHAYML--FLRVAKQGNMVDRL 332

Query: 541 --ERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQPTR 592
              ++INGL     + +A  V  +M  +           LIS+    R     R
Sbjct: 333 SCSKLINGLCRDEKVGEASTVCKMMLEKNVVPDVISYSKLISAYCQTRDMHNAR 386



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 103/233 (44%), Gaps = 25/233 (10%)

Query: 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320
           SKLI+   ++  + +A  + K M E  +VPD+++ + L+  Y +  ++  A+  F  +  
Sbjct: 335 SKLINGLCRDEKVGEASTVCKMMLEKNVVPDVISYSKLISAYCQTRDMHNARLWFHDMVE 394

Query: 321 HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL----------- 369
            G   D  VY  ++  Y   G+ +    L   MI  GI+     Y  LL           
Sbjct: 395 RGL-SDVIVYTVLMNGYCKVGRLQEACELFVQMINLGIKPDVVAYTVLLDGHLKETLQQG 453

Query: 370 --------RSFAQCGDVRGAGQI-TNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
                   R+F     +R   ++  N M+  E +P +   T+L++   +A   ++AR  F
Sbjct: 454 WQGIAKERRTFF----LRTKHKVLLNSMKDMEIEPDVTCYTVLIDGRCKAEYLEEARGLF 509

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVL 473
           D M+  G  PD     ++I  Y  +  + KA +L  E+   G +P   +++VL
Sbjct: 510 DEMLAKGLIPDVHTYTALINGYCSQGEIAKAEDLFQEMIAKGMKPDVLSFSVL 562



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 82/373 (21%), Positives = 149/373 (39%), Gaps = 56/373 (15%)

Query: 218 LQPSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L P +I +  L++    +  T+  ++V E +L + + + +V  Y+ L   +++   +   
Sbjct: 187 LVPDKIHYTCLINGYCLKGETENAWQVFEEML-KANIKPDVVTYNILASGYSRNGLVMKV 245

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
             IL+ M + G+ P+ +T  + +  + + GNL  A+  F  +   G      +Y SM+  
Sbjct: 246 FDILEHMMDQGLEPNSLTYGIAIAGFCRGGNLSEAEVLFNIVEERGIDNINVLYGSMVCG 305

Query: 337 YVNAGQPKLGM----------SLVDMM----ITSGIERSEEI------------------ 364
           Y+++G                ++VD +    + +G+ R E++                  
Sbjct: 306 YLHSGWTDHAYMLFLRVAKQGNMVDRLSCSKLINGLCRDEKVGEASTVCKMMLEKNVVPD 365

Query: 365 ---YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421
              Y  L+ ++ Q  D+  A    + M +E     +   T+L+  Y + G   +A   F 
Sbjct: 366 VISYSKLISAYCQTRDMHNARLWFHDM-VERGLSDVIVYTVLMNGYCKVGRLQEACELFV 424

Query: 422 YMIRLGHKPDDRCTASMIAAYGKKNL---------------LDKALNLLLELEKDG-FEP 465
            MI LG KPD      ++  + K+ L               L     +LL   KD   EP
Sbjct: 425 QMINLGIKPDVVAYTVLLDGHLKETLQQGWQGIAKERRTFFLRTKHKVLLNSMKDMEIEP 484

Query: 466 GPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
               YTVL+D   + + + EA  L  ++   G  P      +L + Y   G   KA    
Sbjct: 485 DVTCYTVLIDGRCKAEYLEEARGLFDEMLAKGLIPDVHTYTALINGYCSQGEIAKAEDL- 543

Query: 526 GFLEAKKEQMGPD 538
            F E   + M PD
Sbjct: 544 -FQEMIAKGMKPD 555



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 62/318 (19%), Positives = 123/318 (38%), Gaps = 15/318 (4%)

Query: 187 ITGKCKLI----TDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFK 242
           I G CK +     +K+L ++     +P L  +  L+  S     NL         + ++ 
Sbjct: 58  IDGLCKEMKLKEAEKVLEIKTRHGSAPDLYSYSYLIH-SHCKMGNL--------EKAWYH 108

Query: 243 VAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMY 302
           V ++V      + N    + L+    K   + +     +K  + G+  D V   + +  Y
Sbjct: 109 VEDMV--SHGIEINCYIVAYLLQCLRKLGMVSEVIVHFQKFRDLGVHLDGVLYNIAMDAY 166

Query: 303 SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE 362
            K GN++ A +    + +    PDK  Y  +I  Y   G+ +    + + M+ + I+   
Sbjct: 167 CKLGNMNEAVKLLNEMMAGSLVPDKIHYTCLINGYCLKGETENAWQVFEEMLKANIKPDV 226

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
             Y  L   +++ G V     I   M  +  +P   +  + +  + + G+  +A   F+ 
Sbjct: 227 VTYNILASGYSRNGLVMKVFDILEHMMDQGLEPNSLTYGIAIAGFCRGGNLSEAEVLFNI 286

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
           +   G    +    SM+  Y      D A  L L + K G      + + L++ L R + 
Sbjct: 287 VEERGIDNINVLYGSMVCGYLHSGWTDHAYMLFLRVAKQGNMVDRLSCSKLINGLCRDEK 346

Query: 483 INEAEQLLGKISELGEAP 500
           + EA  +   + E    P
Sbjct: 347 VGEASTVCKMMLEKNVVP 364


>gi|302819880|ref|XP_002991609.1| hypothetical protein SELMODRAFT_133813 [Selaginella moellendorffii]
 gi|300140642|gb|EFJ07363.1| hypothetical protein SELMODRAFT_133813 [Selaginella moellendorffii]
          Length = 356

 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 116/242 (47%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
            +R Y+ +I A  KE  ++  E ++++M    + PD+ +   L+  Y+ +   +R  + F
Sbjct: 97  TLRSYNVVICAFTKEGSIDKVEEVIREMIRQELRPDLFSFNALIAAYAMSRKPERGLQVF 156

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
            ++++ G  PD   Y ++I  +  +   K  + + + M+ +  +    +Y  L+  + + 
Sbjct: 157 SNMKAAGVLPDIVTYTTLIQMFSRSSMHKEAIEMFEEMVVNKCQPDFFVYSLLVSVYGKA 216

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G V  A  I + +++E  +P + + T L+ A+   G  +++R +F  M   G + D    
Sbjct: 217 GLVADALLIFHRLQLEGHRPNIVTYTSLISAHLHKGLLEESRKHFSQMEAYGCRADVHLL 276

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            +MI AY K  +++ A NLL  L   G  P  A+Y ++V+       + EA      +S 
Sbjct: 277 NTMIDAYAKAGMVNDAANLLHRLTAQGVCPNRASYAIIVEGFLHAGHVEEALAAYASMSG 336

Query: 496 LG 497
            G
Sbjct: 337 AG 338



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 142/328 (43%), Gaps = 11/328 (3%)

Query: 249 SEESFQ-------TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM 301
           +EE FQ         +R Y+ +I A+ +    +DA  +  +M   GI PD VT  +LV  
Sbjct: 15  AEELFQWIKLQDWDKLRPYNAMIAAYYQAKRPKDAWDVYHQMLAEGIDPDEVTYDILVSG 74

Query: 302 YSKAGN-LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
             K G  +DR    F  ++S G     + YN +I A+   G       ++  MI   +  
Sbjct: 75  SGKNGYPIDRL---FLEIKSRGVALTLRSYNVVICAFTKEGSIDKVEEVIREMIRQELRP 131

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
               + AL+ ++A         Q+ + M+     P + + T L++ + ++    +A   F
Sbjct: 132 DLFSFNALIAAYAMSRKPERGLQVFSNMKAAGVLPDIVTYTTLIQMFSRSSMHKEAIEMF 191

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
           + M+    +PD    + +++ YGK  L+  AL +   L+ +G  P   TYT L+      
Sbjct: 192 EEMVVNKCQPDFFVYSLLVSVYGKAGLVADALLIFHRLQLEGHRPNIVTYTSLISAHLHK 251

Query: 481 QLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF 540
            L+ E+ +   ++   G      +  ++ D YA+AG+   A   L  L A+        +
Sbjct: 252 GLLEESRKHFSQMEAYGCRADVHLLNTMIDAYAKAGMVNDAANLLHRLTAQGVCPNRASY 311

Query: 541 ERIINGLLAGGFLQDAQRVHGLMEAQGF 568
             I+ G L  G +++A   +  M   GF
Sbjct: 312 AIIVEGFLHAGHVEEALAAYASMSGAGF 339



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 125/280 (44%), Gaps = 5/280 (1%)

Query: 303 SKAGNLDRAKEAFESLRSHGFQPDK-KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS 361
           S+A  ++ A+E F+ ++   +  DK + YN+MI AY  A +PK    +   M+  GI+  
Sbjct: 7   SRARLIEDAEELFQWIKLQDW--DKLRPYNAMIAAYYQAKRPKDAWDVYHQMLAEGIDPD 64

Query: 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421
           E  Y  L+    + G      ++   ++      TL S  +++ A+ + G  D+      
Sbjct: 65  EVTYDILVSGSGKNG--YPIDRLFLEIKSRGVALTLRSYNVVICAFTKEGSIDKVEEVIR 122

Query: 422 YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ 481
            MIR   +PD     ++IAAY      ++ L +   ++  G  P   TYT L+    R  
Sbjct: 123 EMIRQELRPDLFSFNALIAAYAMSRKPERGLQVFSNMKAAGVLPDIVTYTTLIQMFSRSS 182

Query: 482 LINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFE 541
           +  EA ++  ++      P F +   L  +Y +AG+   AL     L+ +  +     + 
Sbjct: 183 MHKEAIEMFEEMVVNKCQPDFFVYSLLVSVYGKAGLVADALLIFHRLQLEGHRPNIVTYT 242

Query: 542 RIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
            +I+  L  G L+++++    MEA G  A   L   +I +
Sbjct: 243 SLISAHLHKGLLEESRKHFSQMEAYGCRADVHLLNTMIDA 282



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 80/174 (45%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           ++  Y+ LI   ++ +  ++A  + ++M  N   PD    ++LV +Y KAG +  A   F
Sbjct: 167 DIVTYTTLIQMFSRSSMHKEAIEMFEEMVVNKCQPDFFVYSLLVSVYGKAGLVADALLIF 226

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             L+  G +P+   Y S+I A+++ G  +        M   G      +   ++ ++A+ 
Sbjct: 227 HRLQLEGHRPNIVTYTSLISAHLHKGLLEESRKHFSQMEAYGCRADVHLLNTMIDAYAKA 286

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
           G V  A  + + +  +   P   S  ++VE +  AG  ++A + +  M   G K
Sbjct: 287 GMVNDAANLLHRLTAQGVCPNRASYAIIVEGFLHAGHVEEALAAYASMSGAGFK 340



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/112 (23%), Positives = 53/112 (47%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L  E  + N+  Y+ LI AH  +  LE++ +   +M   G   D+     ++  Y+KAG 
Sbjct: 229 LQLEGHRPNIVTYTSLISAHLHKGLLEESRKHFSQMEAYGCRADVHLLNTMIDAYAKAGM 288

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
           ++ A      L + G  P++  Y  ++  +++AG  +  ++    M  +G +
Sbjct: 289 VNDAANLLHRLTAQGVCPNRASYAIIVEGFLHAGHVEEALAAYASMSGAGFK 340



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 68/145 (46%), Gaps = 17/145 (11%)

Query: 187 ITGKCKLITDKILSLEKE--EDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVA 244
           + GK  L+ D +L   +   E   P +  +  L+         LL+  R+  +Q+     
Sbjct: 212 VYGKAGLVADALLIFHRLQLEGHRPNIVTYTSLISAHLHK--GLLEESRKHFSQM----- 264

Query: 245 ELVLSEESF--QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMY 302
                 E++  + +V   + +IDA+AK   + DA  +L ++   G+ P+  +  ++V  +
Sbjct: 265 ------EAYGCRADVHLLNTMIDAYAKAGMVNDAANLLHRLTAQGVCPNRASYAIIVEGF 318

Query: 303 SKAGNLDRAKEAFESLRSHGFQPDK 327
             AG+++ A  A+ S+   GF+ +K
Sbjct: 319 LHAGHVEEALAAYASMSGAGFKDEK 343


>gi|410109899|gb|AFV61029.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           micrantha]
          Length = 431

 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 118/261 (45%), Gaps = 6/261 (2%)

Query: 218 LQPSRIDWINLLD---RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           L+PS + +  L++   RL + +     K A L       Q +V  YS LI+   KE+ ++
Sbjct: 173 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLA---SGVQPDVYTYSVLINGLCKESKMD 229

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
            A  +  +M   G+VP+ VT T L+  + K G +D A E ++ + S    PD   YN++I
Sbjct: 230 GANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLI 289

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
                 G  K    L+D M   G++  +  Y  L+    + GD+  A +    M  E  +
Sbjct: 290 YGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIR 349

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
               + T L+    Q G    A      M+ +G KPD      +I  + KK  + K   L
Sbjct: 350 LDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKL 409

Query: 455 LLELEKDGFEPGPATYTVLVD 475
           L E+ +DG  P   TY VL++
Sbjct: 410 LKEMHRDGHAPSVVTYNVLMN 430



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/313 (20%), Positives = 147/313 (46%), Gaps = 5/313 (1%)

Query: 191 CKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELV--- 247
           C+ + + ++ L+  +       E  E   P+ + + N+L     ++  +  +VA+ V   
Sbjct: 110 CRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDI--RVAQSVFDA 167

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +++   + +V  Y+ L++ + +   L++  R+   M  +G+ PD+ T +VL++   K   
Sbjct: 168 ITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESK 227

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D A E F+ +   G  P+   + ++I  +   G+  L M +   M++  +      Y  
Sbjct: 228 MDGANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNT 287

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    + GD++ A  + + M ++  +P   + T L++   + GD D A  +   MI+  
Sbjct: 288 LIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQEN 347

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            + DD    ++I+   ++     A  +L E+   G +P   TYT++++   +   + +  
Sbjct: 348 IRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGS 407

Query: 488 QLLGKISELGEAP 500
           +LL ++   G AP
Sbjct: 408 KLLKEMHRDGHAP 420



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/267 (20%), Positives = 110/267 (41%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E  +  ++  ++ L+    K+  +  A+ +   + + G+ P +V+   L++ Y + G+LD
Sbjct: 135 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 194

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
                  ++ + G QPD   Y+ +I       +      L D M+  G+  +   +  L+
Sbjct: 195 EGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNGVTFTTLI 254

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               + G V  A +I   M  +   P L +   L+    + GD  QA    D M   G K
Sbjct: 255 DGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLK 314

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     ++I    K+  LD A      + ++        YT L+  L +     +AE++
Sbjct: 315 PDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKM 374

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAG 516
           L ++  +G  P       + + + + G
Sbjct: 375 LREMLSVGLKPDTGTYTMIINEFCKKG 401


>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
          Length = 1380

 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 142/331 (42%), Gaps = 2/331 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +ID + K + +++A  +LK     G VPD VT   L++     G+++RA E F   +
Sbjct: 294 YNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQ 353

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G +PD  VYNS++      G     + +++ M   G     + Y  ++    + G++ 
Sbjct: 354 AKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNIS 413

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  + N   ++ + P + +   L++ Y +    D A    + M   G  PD     S++
Sbjct: 414 DATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVL 473

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
               K   +++      E+   G  P P TY +L++   R   + EA +++ K+S+ G  
Sbjct: 474 NGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLH 533

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P      +L   + R G  + A      LE K      D F  +I        +  A+++
Sbjct: 534 PDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKI 593

Query: 560 HGLMEAQGFAASERLKVALI--SSQTFNRQR 588
              M ++G  A       LI  S +T N  R
Sbjct: 594 FDEMLSKGHRADSYTYRVLIDGSCKTANVDR 624



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/329 (23%), Positives = 147/329 (44%), Gaps = 6/329 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ LI    K++  ++A   L++M   G +PD  T   ++  Y K   +  A E  
Sbjct: 255 DVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELL 314

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           +     GF PD+  Y S+I      G  +  + L +     GI+    +Y +L++     
Sbjct: 315 KDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQ 374

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A Q+ N M  E   P +++  +++    + G+   A    +  I  G+ PD    
Sbjct: 375 GLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTF 434

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I  Y K+  LD AL L+  + + G  P   TY  +++ L +   +NE  +   ++  
Sbjct: 435 NTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMIL 494

Query: 496 LGEAP-PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGF 552
            G  P P    + L + + R+   ++A + +  ++  +E + PD   F  +I G    G 
Sbjct: 495 KGCHPNPITYNI-LIENFCRSNKMEEASKVI--VKMSQEGLHPDAVSFNTLIYGFCRNGD 551

Query: 553 LQDAQRVHGLMEAQGFAASERLKVALISS 581
           L+ A  +   +E +G++A+      LI +
Sbjct: 552 LEGAYLLFQKLEEKGYSATADTFNTLIGA 580



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 117/248 (47%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           +  +V  ++ LID + K   L+ A +++++M E GI PD +T   +++   KAG ++   
Sbjct: 427 YLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVN 486

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           E F+ +   G  P+   YN +I  +  + + +    ++  M   G+      +  L+  F
Sbjct: 487 ETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGF 546

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + GD+ GA  +   +  + +  T ++   L+ A+    +   A   FD M+  GH+ D 
Sbjct: 547 CRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADS 606

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
                +I    K   +D+A   L+E+ K GF P  +T+  +++ L     + +A  ++  
Sbjct: 607 YTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHI 666

Query: 493 ISELGEAP 500
           + ++G  P
Sbjct: 667 MVKIGVVP 674



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/300 (21%), Positives = 121/300 (40%), Gaps = 4/300 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           ++EE    +++ Y+ +I+   K   + DA  ++      G +PD+ T   L+  Y K   
Sbjct: 387 MAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLK 446

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           LD A +  E +  +G  PD   YNS++     AG+          MI  G   +   Y  
Sbjct: 447 LDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNI 506

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+ +F +   +  A ++   M  E   P   S   L+  + + GD + A   F  +   G
Sbjct: 507 LIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKG 566

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
           +        ++I A+  K  +  A  +  E+   G      TY VL+D   +   ++ A 
Sbjct: 567 YSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAY 626

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK-KEQMGPDDFERIING 546
             L ++ + G  P      +   +     +  +  QA+G +    K  + P+  + I+N 
Sbjct: 627 MHLVEMIKKGFIPSMS---TFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPEVVDTILNA 683



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 62/316 (19%), Positives = 119/316 (37%), Gaps = 42/316 (13%)

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSK----------------------------- 304
            DA ++  +M    + P++     ++H   K                             
Sbjct: 169 HDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIW 228

Query: 305 ------AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
                 AG L  A    + +R++   PD   YN++I        P+  M  +  M+  G 
Sbjct: 229 IRGLCEAGRLPEAVRLVDGMRAYAV-PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGC 287

Query: 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418
              +  Y  ++  + +   V+ A ++      + F P   +   L+      GD ++A  
Sbjct: 288 LPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALE 347

Query: 419 NFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLG 478
            F+     G KPD     S++     + L+  AL ++ E+ ++G  P   TY ++++ L 
Sbjct: 348 LFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLC 407

Query: 479 RLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ-MGP 537
           ++  I++A  ++      G  P      +L D Y +     K   AL  +E   E  + P
Sbjct: 408 KMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCK---RLKLDSALQLVERMWEYGIAP 464

Query: 538 D--DFERIINGLLAGG 551
           D   +  ++NGL   G
Sbjct: 465 DTITYNSVLNGLCKAG 480



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 67/341 (19%), Positives = 130/341 (38%), Gaps = 36/341 (10%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y   I A+A+   L DA    ++M+     P       ++     A   D+A + +  + 
Sbjct: 54  YVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRML 113

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV----------------------------- 350
           + G  PD   +   + ++    +P + + L+                             
Sbjct: 114 AAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQ 173

Query: 351 --DMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYG 408
             D M+ + +  +   +  +L +  + GDV  AG +   +        L +  + +    
Sbjct: 174 LFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLC 233

Query: 409 QAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPA 468
           +AG   +A    D M R    PD     ++I    KK++  +A++ L  +   G  P   
Sbjct: 234 EAGRLPEAVRLVDGM-RAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDF 292

Query: 469 TYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFL 528
           TY  ++D   ++ ++ EA +LL      G  P      SL +     G  ++AL+   F 
Sbjct: 293 TYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALEL--FN 350

Query: 529 EAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQG 567
           EA+ + + PD   +  ++ GL   G +  A +V   M  +G
Sbjct: 351 EAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEG 391



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 68/287 (23%), Positives = 120/287 (41%), Gaps = 15/287 (5%)

Query: 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
           +  Y++AG L  A +AFE +      P    YN+++ A V+A        +   M+ +G+
Sbjct: 58  IRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGV 117

Query: 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418
                 +   LRSF  C   R    +  ++R    +  +  CT++   Y   G    AR 
Sbjct: 118 SPDLHTHTIRLRSF--CLTARPHIAL-RLLRALPHRGAVAYCTVVCGLYAH-GHTHDARQ 173

Query: 419 NFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLG 478
            FD M+     P+      ++ A  K+  + +A  LL ++ + G      TY + +  L 
Sbjct: 174 LFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLC 233

Query: 479 RLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL--QALGFLEAKKEQ-M 535
               + EA +L+  +     A P    V   +   R G+ KK++  +A+ +L     Q  
Sbjct: 234 EAGRLPEAVRLVDGMR--AYAVP---DVVTYNTLIR-GLCKKSMPQEAMHYLRRMMNQGC 287

Query: 536 GPDDF--ERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
            PDDF    II+G      +Q+A  +      +GF   +    +LI+
Sbjct: 288 LPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLIN 334



 Score = 39.3 bits (90), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 76/187 (40%), Gaps = 10/187 (5%)

Query: 177 EMILPE-EPKPITGKCKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLRE- 234
           EMIL    P PIT    LI +   S + EE    ++   +E L P  + +  L+      
Sbjct: 491 EMILKGCHPNPITYNI-LIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRN 549

Query: 235 ---QNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPD 291
              +   L F+  E    E+ +      ++ LI A + +  +  AE+I  +M   G   D
Sbjct: 550 GDLEGAYLLFQKLE----EKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRAD 605

Query: 292 IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVD 351
             T  VL+    K  N+DRA      +   GF P    +  +I +     +    + ++ 
Sbjct: 606 SYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIH 665

Query: 352 MMITSGI 358
           +M+  G+
Sbjct: 666 IMVKIGV 672


>gi|147780655|emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera]
          Length = 1037

 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 142/306 (46%), Gaps = 5/306 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENG-IVPDIVTSTVLVHMYSKAG 306
           +SE+    NV  Y+ LI  + K+  +++AE++L+ M E   +VPD     VL+  Y + G
Sbjct: 287 MSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTG 346

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            +D A    + +   G + +  + NS+I  Y   G+      ++  M+   ++     Y 
Sbjct: 347 KIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYN 406

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            LL  + + G    A  + + M  E  +PT+ +   L++   + G  D A   +  M++ 
Sbjct: 407 TLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKX 466

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G  PD+   ++++    K    + A  L  ++   GF     T+  ++  L ++  + EA
Sbjct: 467 GVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEA 526

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
           E++  K+ +LG +P      +L D Y +A    +A +  G +E  +E + P     + N 
Sbjct: 527 EEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAME--REXISPS--IEMYNS 582

Query: 547 LLAGGF 552
           L++G F
Sbjct: 583 LISGLF 588



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 146/328 (44%), Gaps = 5/328 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           ++R  + L++   K      A  + ++M   GIVPD+   +++V+ + K G +D A    
Sbjct: 190 SLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFV 249

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + + + G +P+   Y+S+I  YV+ G  +    ++  M   G+ R+   Y  L++ + + 
Sbjct: 250 KKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQ 309

Query: 376 GDVRGAGQITNIMRIE-EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
             +  A ++   M+ E    P   +  +L++ Y + G  D A    D M+RLG K +   
Sbjct: 310 CKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFI 369

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
             S+I  Y K+  + +A  ++  +     +P   +Y  L+D   R    +EA  L  K+ 
Sbjct: 370 CNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKML 429

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGF 552
           + G  P      +L     R G    ALQ    +   K  + PD+  +  +++GL     
Sbjct: 430 QEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLM--MKXGVAPDEVGYSTLLDGLFKMEN 487

Query: 553 LQDAQRVHGLMEAQGFAASERLKVALIS 580
            + A  +   + A+GF  S      +IS
Sbjct: 488 FEGASTLWKDILARGFTKSRITFNTMIS 515



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/378 (22%), Positives = 158/378 (41%), Gaps = 15/378 (3%)

Query: 211 LAEWKELLQPSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAK 269
           + +W   L+P    +  LLD   RE +T   F + + +L +E  +  V  Y+ L+    +
Sbjct: 393 MVDWN--LKPDSYSYNTLLDGYCREGHTSEAFNLCDKML-QEGIEPTVLTYNTLLKGLCR 449

Query: 270 ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKV 329
               +DA +I   M + G+ PD V  + L+    K  N + A   ++ + + GF   +  
Sbjct: 450 VGAFDDALQIWHLMMKXGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRIT 509

Query: 330 YNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389
           +N+MI      G+      + D M   G       Y  L+  + +  +V  A ++   M 
Sbjct: 510 FNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAME 569

Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD 449
            E   P++E    L+    ++    +       M   G  P+     ++I  + K+ +LD
Sbjct: 570 REXISPSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLD 629

Query: 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLC 509
           KA +   E+ ++G        + +V  L RL  I+EA  L+ K+ + G  P         
Sbjct: 630 KAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDH------- 682

Query: 510 DMYARAGIEKKALQALG--FLEAKKEQMGPDD--FERIINGLLAGGFLQDAQRVHGLMEA 565
           + + ++ I   A+Q +     E+ K  + P++  +   I GL   G + DA+R   ++  
Sbjct: 683 ECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSL 742

Query: 566 QGFAASERLKVALISSQT 583
           +GF         LI   +
Sbjct: 743 KGFVPDNFTYCTLIHGYS 760



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 124/271 (45%), Gaps = 5/271 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  Y  LID   KE  L+ A     +M ENG+  +I+  + +V    + G +D A    
Sbjct: 611 NIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLM 670

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + +  HGF PD + +    + Y  A   K+  SL D    + +  +  +Y   +    + 
Sbjct: 671 QKMVDHGFFPDHECFLKSDIRY--AAIQKIADSL-DESCKTFLLPNNIVYNIAIAGLCKT 727

Query: 376 GDVRGAGQITNIMRIEEFQP-TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
           G V  A +  +++ ++ F P     CTL +  Y  AG+ D+A    D M+R G  P+   
Sbjct: 728 GKVDDARRFFSMLSLKGFVPDNFTYCTL-IHGYSAAGNVDEAFRLRDEMLRRGLVPNIVT 786

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
             ++I    K   +D+A  L  +L + G  P   TY  L+D   ++  ++ A +L  K+ 
Sbjct: 787 YNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMI 846

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
           E G +P      +L +   + G  +++++ L
Sbjct: 847 EEGISPSVVTYSALINGLCKHGDIERSMKLL 877



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 94/399 (23%), Positives = 167/399 (41%), Gaps = 46/399 (11%)

Query: 187 ITGKCKLITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLD-RLREQNTQLYFKVA 244
           I+G CK+   K++  E EE    +  + K+L   P  I +  L+D   +  N    FKV 
Sbjct: 514 ISGLCKM--GKMV--EAEE----IFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVK 565

Query: 245 ELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK 304
              +  E    ++  Y+ LI    K   L +   +L +M   G+ P+IVT   L+  + K
Sbjct: 566 G-AMEREXISPSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWCK 624

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
            G LD+A  ++  +  +G   +  + ++M+      G+      L+  M+  G     E 
Sbjct: 625 EGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHEC 684

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL-ESC-----------TLLVEAYGQAGD 412
           +L          D+R A        I++   +L ESC            + +    + G 
Sbjct: 685 FLK--------SDIRYAA-------IQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGK 729

Query: 413 PDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTV 472
            D AR  F  +   G  PD+    ++I  Y     +D+A  L  E+ + G  P   TY  
Sbjct: 730 VDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNA 789

Query: 473 LVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK- 531
           L++ L + + ++ A++L  K+ + G  P      +L D Y + G    A +    L+ K 
Sbjct: 790 LINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFK----LKDKM 845

Query: 532 -KEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQG 567
            +E + P    +  +INGL   G ++ + ++   M   G
Sbjct: 846 IEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAG 884



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 84/184 (45%), Gaps = 6/184 (3%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           +LS + F  +   Y  LI  ++    +++A R+  +M   G+VP+IVT   L++   K+ 
Sbjct: 739 MLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSE 798

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           N+DRA+  F  L   G  P+   YN++I  Y   G       L D MI  GI  S   Y 
Sbjct: 799 NVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYS 858

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTL-ESCTLL-----VEAYGQAGDPDQARSNF 420
           AL+    + GD+  + ++ N M        L E CTL+        Y +   P+  + N 
Sbjct: 859 ALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTLVQGGFKTSNYNEMSKPEALKQNM 918

Query: 421 DYMI 424
           +  +
Sbjct: 919 NCFL 922



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/329 (21%), Positives = 135/329 (41%), Gaps = 7/329 (2%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           V  E +F   V D   ++  + ++   ++A  +   M + G +P + +   L++   K G
Sbjct: 148 VYREFAFSPTVFD--MILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNG 205

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
               A   ++ +   G  PD  + + M+ A+   G+       V  M   G+E +   Y 
Sbjct: 206 ETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYH 265

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI-R 425
           +L+  +   GDV  A  +   M  +     + + TLL++ Y +    D+A      M   
Sbjct: 266 SLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEE 325

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
               PD+R    +I  Y +   +D A+ LL E+ + G +        L++   +   I+E
Sbjct: 326 AALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHE 385

Query: 486 AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERI 543
           AE ++ ++ +    P      +L D Y R G   +A       +  +E + P    +  +
Sbjct: 386 AEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCD--KMLQEGIEPTVLTYNTL 443

Query: 544 INGLLAGGFLQDAQRVHGLMEAQGFAASE 572
           + GL   G   DA ++  LM   G A  E
Sbjct: 444 LKGLCRVGAFDDALQIWHLMMKXGVAPDE 472



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/318 (20%), Positives = 131/318 (41%), Gaps = 4/318 (1%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
            +TN+   + LI+ + K   + +AE ++ +M +  + PD  +   L+  Y + G+   A 
Sbjct: 363 LKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAF 422

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
              + +   G +P    YN+++      G     + +  +M+  G+   E  Y  LL   
Sbjct: 423 NLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKXGVAPDEVGYSTLLDGL 482

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            +  +  GA  +   +    F  +  +   ++    + G   +A   FD M  LG  PD 
Sbjct: 483 FKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDG 542

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               ++I  Y K + + +A  +   +E++   P    Y  L+  L + + + E   LL +
Sbjct: 543 ITYRTLIDGYCKASNVGQAFKVKGAMEREXISPSIEMYNSLISGLFKSRRLVEXTDLLTE 602

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF--ERIINGLLAG 550
           +   G  P      +L D + + G+  KA  +  + E  +  +  +      +++GL   
Sbjct: 603 MGIRGLTPNIVTYGALIDGWCKEGMLDKAFSS--YFEMTENGLSANIIICSTMVSGLYRL 660

Query: 551 GFLQDAQRVHGLMEAQGF 568
           G + +A  +   M   GF
Sbjct: 661 GRIDEANLLMQKMVDHGF 678



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 83/187 (44%)

Query: 288 IVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGM 347
           ++P+ +   + +    K G +D A+  F  L   GF PD   Y ++I  Y  AG      
Sbjct: 710 LLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAF 769

Query: 348 SLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAY 407
            L D M+  G+  +   Y AL+    +  +V  A ++ + +  +   P + +   L++ Y
Sbjct: 770 RLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGY 829

Query: 408 GQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGP 467
            + G+ D A    D MI  G  P     +++I    K   +++++ LL ++ K G +   
Sbjct: 830 CKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKL 889

Query: 468 ATYTVLV 474
             Y  LV
Sbjct: 890 IEYCTLV 896


>gi|297806463|ref|XP_002871115.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316952|gb|EFH47374.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 942

 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 115/231 (49%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
            V  ++ LI+   ++  +E A  IL +M   G+  +  T T ++  Y+  G+  +A E F
Sbjct: 624 TVHTFNALINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYF 683

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             L++ G + D   Y +++ A   +G+ +  +++   M    I R+  +Y  L+  +A+ 
Sbjct: 684 TRLQNEGLEVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARR 743

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           GDV  A  +   M+ E  +P + + T  + A  +AGD ++A    + M  LG KP+ +  
Sbjct: 744 GDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTY 803

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
            ++I  + + +L +KAL+   E++  G +P  A Y  L+  L     I EA
Sbjct: 804 TTLIKGWARASLPEKALSCYEEMKAVGLKPDKAVYHCLLTSLLSRASIAEA 854



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 74/355 (20%), Positives = 149/355 (41%), Gaps = 14/355 (3%)

Query: 238 QLYFKVAEL--------VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIV 289
            LY KV ++        V+ EE  + N++ YS +I+   K     +A  + + M + G+ 
Sbjct: 493 NLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMK 552

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL 349
           PD++    ++  +   GN+DRA +  + ++    +P  + +  +I  +  +G  +  + +
Sbjct: 553 PDVILYNNIIAAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIINGFAKSGDMRRSLEV 612

Query: 350 VDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409
            DMM   G   +   + AL+    +   +  A +I + M +        + T +++ Y  
Sbjct: 613 FDMMRRCGCVPTVHTFNALINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYAS 672

Query: 410 AGDPDQARSNFDYMIRL---GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG 466
            GD  +A   F+Y  RL   G + D     +++ A  K   +  AL +  E+        
Sbjct: 673 VGDTGKA---FEYFTRLQNEGLEVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRN 729

Query: 467 PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALG 526
              Y +L+D   R   + EA  L+ ++ + G  P      S     ++AG   +A Q + 
Sbjct: 730 SFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIE 789

Query: 527 FLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
            +EA   +     +  +I G       + A   +  M+A G    + +   L++S
Sbjct: 790 EMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAVGLKPDKAVYHCLLTS 844



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 66/311 (21%), Positives = 133/311 (42%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N   Y K+I AH +   +E AE ++++M E GI   I     ++  Y+   +  +    F
Sbjct: 414 NASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLIVF 473

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + L+  GF P    Y  +I  Y   G+    + +  +M   G++ + + Y  ++  F + 
Sbjct: 474 KRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKL 533

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
            D   A  +   M  E  +P +     ++ A+   G+ D+A      M +L H+P  R  
Sbjct: 534 KDWANAFAVFEDMVKEGMKPDVILYNNIIAAFCGMGNMDRAIQTVKEMQKLRHRPTTRTF 593

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +I  + K   + ++L +   + + G  P   T+  L++ L   + + +A ++L +++ 
Sbjct: 594 MPIINGFAKSGDMRRSLEVFDMMRRCGCVPTVHTFNALINGLVEKRQMEKAVEILDEMTL 653

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
            G +        +   YA  G   KA +    L+ +  ++    +E ++      G +Q 
Sbjct: 654 AGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLEVDIFTYEALLKACCKSGRMQS 713

Query: 556 AQRVHGLMEAQ 566
           A  V   M A+
Sbjct: 714 ALAVTKEMSAR 724



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/316 (22%), Positives = 139/316 (43%)

Query: 258 RDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFES 317
           R Y+ LI A+A    +E+A   ++KM E GI   +VT +V+V  +SKAGN + A   F+ 
Sbjct: 346 RIYTSLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGNAEAADHWFDE 405

Query: 318 LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
            +      +  +Y  +I A+      +   +LV  M   GI+    IY  ++  +    D
Sbjct: 406 AKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVAD 465

Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
            +    +   ++   F PT+ +   L+  Y + G   +A      M   G K + +  + 
Sbjct: 466 EKKGLIVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSM 525

Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           MI  + K      A  +  ++ K+G +P    Y  ++     +  ++ A Q + ++ +L 
Sbjct: 526 MINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIIAAFCGMGNMDRAIQTVKEMQKLR 585

Query: 498 EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQ 557
             P  +  + + + +A++G  +++L+    +           F  +INGL+    ++ A 
Sbjct: 586 HRPTTRTFMPIINGFAKSGDMRRSLEVFDMMRRCGCVPTVHTFNALINGLVEKRQMEKAV 645

Query: 558 RVHGLMEAQGFAASER 573
            +   M   G +A+E 
Sbjct: 646 EILDEMTLAGVSANEH 661



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/326 (20%), Positives = 127/326 (38%), Gaps = 35/326 (10%)

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           ++V  Y + G++ RA+E FE +R+ G  P  ++Y S+I AY      +  +S V  M   
Sbjct: 315 LMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMEEALSCVRKMKEE 374

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAG--------------------------QITNIMRI 390
           GIE S   Y  ++  F++ G+   A                           Q  N+ R 
Sbjct: 375 GIEMSLVTYSVIVGGFSKAGNAEAADHWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERA 434

Query: 391 EEFQPTLES---------CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441
           E     +E             +++ Y    D  +    F  +   G  P       +I  
Sbjct: 435 EALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLIVFKRLKECGFTPTVVTYGCLINL 494

Query: 442 YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
           Y K   + KAL +   ++++G +    TY+++++   +L+    A  +   + + G  P 
Sbjct: 495 YTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPD 554

Query: 502 FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHG 561
             +  ++   +   G   +A+Q +  ++  + +     F  IING    G ++ +  V  
Sbjct: 555 VILYNNIIAAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIINGFAKSGDMRRSLEVFD 614

Query: 562 LMEAQGFAASERLKVALISSQTFNRQ 587
           +M   G   +     ALI+     RQ
Sbjct: 615 MMRRCGCVPTVHTFNALINGLVEKRQ 640



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 78/159 (49%), Gaps = 9/159 (5%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +S  +   N   Y+ LID  A+   + +A  ++++M + G+ PDI T T  +   SKAG+
Sbjct: 721 MSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGD 780

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           ++RA +  E + + G +P+ K Y ++I  +  A  P+  +S  + M   G++  + +Y  
Sbjct: 781 MNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAVGLKPDKAVYHC 840

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA 406
           LL S      +  A   + +M I         C  +VEA
Sbjct: 841 LLTSLLSRASIAEAYIYSGVMTI---------CKEMVEA 870



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 69/164 (42%), Gaps = 35/164 (21%)

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
           +P+     L+V+ YG+ GD  +AR  F+ M   G  P  R   S+I AY     +++AL+
Sbjct: 307 KPSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMEEALS 366

Query: 454 LLLELEKDGFEPGPATYTVLV-------------DWLGRLQLINE--------------- 485
            + +++++G E    TY+V+V              W    + I++               
Sbjct: 367 CVRKMKEEGIEMSLVTYSVIVGGFSKAGNAEAADHWFDEAKRIHKTLNASIYGKIIYAHC 426

Query: 486 -------AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522
                  AE L+ ++ E G   P  I  ++ D Y     EKK L
Sbjct: 427 QTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGL 470


>gi|224113307|ref|XP_002316451.1| predicted protein [Populus trichocarpa]
 gi|222865491|gb|EEF02622.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 83/366 (22%), Positives = 161/366 (43%), Gaps = 20/366 (5%)

Query: 242 KVAELVLSEESFQT--------NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIV 293
           K+ +L L+ E F+T        NV  Y+ LI    KE  + DAE++  +M+   +VP+ V
Sbjct: 78  KLGDLKLAMELFETMKRRKVVPNVFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPNRV 137

Query: 294 TSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMM 353
           T   L+  Y KAG +D A    E ++    +P    +NS++     A + +    +++ +
Sbjct: 138 TFNTLIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSGLCKARRIEEARCMLNEI 197

Query: 354 ITSGIERSEEIYLALLRSFAQCGDVRGAG------QITNIMRIEEFQPTLESCTLLVEAY 407
             +G       Y  +     +  D  GA        I   ++I+ +     +C++L+   
Sbjct: 198 KCNGFVPDGFTYSIIFDGLLKSDDGAGAALDLYREAIGKGVKIDNY-----TCSILLNGL 252

Query: 408 GQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGP 467
            + G  ++A      ++  G  P +    +++  Y +   +D+A+  + ++E  G  P  
Sbjct: 253 CKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDRAILTIEQMESRGLRPNC 312

Query: 468 ATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGF 527
             +  ++D    +Q+I++AE+ + K+   G AP  +    L D Y R  +  +  Q L  
Sbjct: 313 IAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGYGRLCVFSRCFQILEE 372

Query: 528 LEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI-SSQTFNR 586
           +E   E+     +  +IN L   G + +A+ V   M  +G   +  +   LI  S T  +
Sbjct: 373 MEENGEKPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGK 432

Query: 587 QRQPTR 592
            R+  R
Sbjct: 433 LREALR 438



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 124/288 (43%), Gaps = 4/288 (1%)

Query: 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320
           S L++   KE  +E AE +LK + E+G+VP  V    +V+ Y + G++DRA    E + S
Sbjct: 246 SILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDRAILTIEQMES 305

Query: 321 HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRG 380
            G +P+   +NS+I  +            V  M+  GI  S E Y  L+  + +      
Sbjct: 306 RGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGYGRLCVFSR 365

Query: 381 AGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIA 440
             QI   M     +P + S   L+    + G   +A      M+  G  P+      +I 
Sbjct: 366 CFQILEEMEENGEKPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANIYNMLID 425

Query: 441 AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
                  L +AL    E+ K+G      TY  L+  L ++  + EAE++   I+  G  P
Sbjct: 426 GSCTVGKLREALRFFDEMSKNGIGATIVTYNSLIKGLCKMGKLKEAEEMFFLITSTGHCP 485

Query: 501 PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP--DDFERIING 546
                 SL   Y+ AG  +K L+   +   KK  + P  + F  +I+G
Sbjct: 486 DVITYNSLISGYSNAGNSQKCLEL--YETMKKLGLKPTINTFHPLISG 531



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 135/320 (42%), Gaps = 9/320 (2%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
            + N   ++ +ID   +   ++ AE  +KKM   GI P + T  +L+  Y +     R  
Sbjct: 308 LRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGYGRLCVFSRCF 367

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           +  E +  +G +P+   Y S+I      G+      ++  M+  G+  +  IY  L+   
Sbjct: 368 QILEEMEENGEKPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANIYNMLIDGS 427

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
              G +R A +  + M       T+ +   L++   + G   +A   F  +   GH PD 
Sbjct: 428 CTVGKLREALRFFDEMSKNGIGATIVTYNSLIKGLCKMGKLKEAEEMFFLITSTGHCPDV 487

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               S+I+ Y       K L L   ++K G +P   T+  L+    + + I   E L  +
Sbjct: 488 ITYNSLISGYSNAGNSQKCLELYETMKKLGLKPTINTFHPLISGCSK-EGIKLKETLFNE 546

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG--PDD--FERIINGLL 548
           + ++  +P   +  ++   Y   G  +KA      L+ +   MG  PD+  +  +I G L
Sbjct: 547 MLQMNLSPDRVVYNAMIHCYQETGHVQKAFS----LQKEMVDMGVRPDNKTYNSLILGHL 602

Query: 549 AGGFLQDAQRVHGLMEAQGF 568
             G L + + +   M+A+G 
Sbjct: 603 KEGKLSETKDLVDDMKAKGL 622



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 90/195 (46%)

Query: 283 MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
           M + G +P      ++V    ++   D   + F+ +   GF+PDK VY   ++A V  G 
Sbjct: 22  MRQEGRLPSFGYVRMIVESLVESKKFDNVLDLFKEMVGLGFRPDKLVYGRAMLAAVKLGD 81

Query: 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402
            KL M L + M    +  +  +Y  L+    +   +R A ++   M +    P   +   
Sbjct: 82  LKLAMELFETMKRRKVVPNVFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPNRVTFNT 141

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           L++ Y +AG+ D A    + M +   +P      S+++   K   +++A  +L E++ +G
Sbjct: 142 LIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSGLCKARRIEEARCMLNEIKCNG 201

Query: 463 FEPGPATYTVLVDWL 477
           F P   TY+++ D L
Sbjct: 202 FVPDGFTYSIIFDGL 216



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/251 (20%), Positives = 99/251 (39%), Gaps = 34/251 (13%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +S+      +  Y+ LI    K   L++AE +   +   G  PD++T   L+  YS AGN
Sbjct: 443 MSKNGIGATIVTYNSLIKGLCKMGKLKEAEEMFFLITSTGHCPDVITYNSLISGYSNAGN 502

Query: 308 LDRAKEAFESLRSHGFQP----------------------------------DKKVYNSM 333
             +  E +E+++  G +P                                  D+ VYN+M
Sbjct: 503 SQKCLELYETMKKLGLKPTINTFHPLISGCSKEGIKLKETLFNEMLQMNLSPDRVVYNAM 562

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           I  Y   G  +   SL   M+  G+    + Y +L+    + G +     + + M+ +  
Sbjct: 563 IHCYQETGHVQKAFSLQKEMVDMGVRPDNKTYNSLILGHLKEGKLSETKDLVDDMKAKGL 622

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
            P  ++ +LL++ +    D + A   +  M+  G  P+      +     K   L +A +
Sbjct: 623 IPEADTYSLLIQGHCDLKDFNGAYVWYREMLENGFLPNVCICNELSTGLRKDGRLQEAQS 682

Query: 454 LLLELEKDGFE 464
           +  E+  +G +
Sbjct: 683 ICSEMIANGMD 693



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 87/190 (45%), Gaps = 6/190 (3%)

Query: 383 QITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAY 442
           ++ + MR E   P+     ++VE+  ++   D     F  M+ LG +PD       + A 
Sbjct: 17  ELYDFMRQEGRLPSFGYVRMIVESLVESKKFDNVLDLFKEMVGLGFRPDKLVYGRAMLAA 76

Query: 443 GKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPF 502
            K   L  A+ L   +++    P    Y VL+  L + + I +AE+L G++S     P  
Sbjct: 77  VKLGDLKLAMELFETMKRRKVVPNVFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPNR 136

Query: 503 KIQVSLCDMYARAGIEKKALQALGFLE-AKKEQMGPD--DFERIINGLLAGGFLQDAQRV 559
               +L D Y +AG   +   A+G  E  KKE++ P    F  +++GL     +++A+ +
Sbjct: 137 VTFNTLIDGYCKAG---EVDVAIGLRERMKKEKVEPSIITFNSLLSGLCKARRIEEARCM 193

Query: 560 HGLMEAQGFA 569
              ++  GF 
Sbjct: 194 LNEIKCNGFV 203


>gi|147866209|emb|CAN83683.1| hypothetical protein VITISV_017537 [Vitis vinifera]
          Length = 833

 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/330 (22%), Positives = 143/330 (43%), Gaps = 4/330 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ LID   +E  +E+A  + +KM ++G+ P I+T   L++ Y K G +  A +  
Sbjct: 268 NVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLL 327

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +     +P+ + YN ++       +      L+  ++ +G+      Y  L+  F + 
Sbjct: 328 SVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKE 387

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A  I N M     +P   + T L++   + G  +QA      M++ G   D+   
Sbjct: 388 GQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTF 447

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I  + K         L   + ++       T+   +D LG+   +NEA  +LGK+ +
Sbjct: 448 TALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMK 507

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFL 553
            G  P       L + + RAG    +L+ L     K+    P+   +  IINGL   G +
Sbjct: 508 YGLVPSVVTHTILIEGHCRAGETALSLKMLE--RMKQAGCSPNVYTYTIIINGLCNNGRV 565

Query: 554 QDAQRVHGLMEAQGFAASERLKVALISSQT 583
           ++A+ +   M + G + +      L+ +  
Sbjct: 566 EEAETILFSMSSFGVSPNHFTYAVLVKAHV 595



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 140/310 (45%), Gaps = 4/310 (1%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           V+ + + + N+R Y++L++   + +    A  +L+++ +NG++PD VT  +LV  + K G
Sbjct: 329 VMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEG 388

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            L+ A   F S+ S G +PD   + ++I      G+ +    ++  M+  GI   E  + 
Sbjct: 389 QLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFT 448

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           AL+    + G  +    +   M       T  +    ++A G+    ++A +    M++ 
Sbjct: 449 ALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKY 508

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G  P       +I  + +      +L +L  +++ G  P   TYT++++ L     + EA
Sbjct: 509 GLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEA 568

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
           E +L  +S  G +P       L   + +AG   +A Q +  +     Q  P+    I + 
Sbjct: 569 ETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQ--PN--SHIYSA 624

Query: 547 LLAGGFLQDA 556
           LL+G  L + 
Sbjct: 625 LLSGFVLSNT 634



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 142/345 (41%), Gaps = 4/345 (1%)

Query: 243 VAELV---LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLV 299
           VA LV   +  E F     DY  +++A  K   ++ AE    K+   G   D    T LV
Sbjct: 111 VAFLVYRRMVNEGFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLV 170

Query: 300 HMYSKAGNLDRAKEAFESL-RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
               +  +L  A   FE + +    +P+   Y+ +I     AG+ +    L   M+  G 
Sbjct: 171 LANCRRDDLGEAFRVFEKMSKEESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGC 230

Query: 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418
           + S   Y  L+++    G    A ++ + M  +   P + + T+L++   + G  ++A  
Sbjct: 231 QPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANG 290

Query: 419 NFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLG 478
            F  M++ G  P      ++I  Y K+  +  A  LL  +EK   +P   TY  L++ L 
Sbjct: 291 VFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLC 350

Query: 479 RLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
           R+    +A  LL ++ + G  P       L D + + G    A      + +   +    
Sbjct: 351 RVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGF 410

Query: 539 DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQT 583
            F  +I+GL   G L+ A  + G M  +G +  E    ALI    
Sbjct: 411 TFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHC 455



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 121/276 (43%)

Query: 241 FKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
           F+V E +  EES + N   YS LI    +   LE+A ++ ++M E G  P   T TVL+ 
Sbjct: 183 FRVFEKMSKEESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIK 242

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
                G  D+A +  + + +    P+   Y  +I      G+ +    +   M+  G+  
Sbjct: 243 AKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCP 302

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
               + AL+  + + G V  A Q+ ++M     +P + +   L+E   +     +A    
Sbjct: 303 GIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLL 362

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
             ++  G  PD      ++  + K+  L+ A N+   +   G EP   T+T L+D L +L
Sbjct: 363 RRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKL 422

Query: 481 QLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
             + +A  +LG + + G +       +L D + + G
Sbjct: 423 GRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIG 458



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 126/282 (44%), Gaps = 12/282 (4%)

Query: 218 LQPSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L PS +    L++   R   T L  K+ E  + +     NV  Y+ +I+       +E+A
Sbjct: 510 LVPSVVTHTILIEGHCRAGETALSLKMLER-MKQAGCSPNVYTYTIIINGLCNNGRVEEA 568

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
           E IL  M+  G+ P+  T  VLV  + KAG LDRA +   ++  +G QP+  +Y++++  
Sbjct: 569 ETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSG 628

Query: 337 YV--NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
           +V  N       +S    +    +   E     L     +  DV  A +I + ++ +   
Sbjct: 629 FVLSNTAIGARALSSTGDLDARSLSSEENDNNCLSSHVFRLMDVDHALKIRDEIK-KCGV 687

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           PT +    LV    + G   +A      M++ G  PD +  +S+I  Y K    D  L  
Sbjct: 688 PTEDLYNFLVVGLCKEGRIIEADQLTQDMVKHGLFPD-KAISSIIEHYCKTCKYDNCLEF 746

Query: 455 LLELEKDGFEPGPATYTVLVDWL---GRLQLINEAEQLLGKI 493
           +  +  + F P  A+Y  ++  L   GR+Q   EA++L+  +
Sbjct: 747 MKLVLDNKFVPSFASYCWVIHGLRNEGRVQ---EAQKLVSDL 785


>gi|168049914|ref|XP_001777406.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671255|gb|EDQ57810.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 570

 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/302 (22%), Positives = 133/302 (44%), Gaps = 35/302 (11%)

Query: 233 REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDI 292
           R Q  +L  ++AE +++      N+  YS LI    + N  + A     +M++   VPD 
Sbjct: 55  RGQQWELSQQIAEDMINAGIRPDNIT-YSTLISCANRCNYQDAAMAWFDRMHDAQCVPDA 113

Query: 293 VTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDM 352
           VT + ++ +Y K G  D A   +ES++  G++PDK  Y +M+  +  AG     +S+ D 
Sbjct: 114 VTYSTMIDVYGKVGKYDEAVALYESVKKSGWKPDKVTYGTMVRLFGRAGYISAAVSIFDE 173

Query: 353 MITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGD 412
           M  SGI+    +Y  ++    + G +  A ++   M+    +P   + + ++E Y ++G 
Sbjct: 174 MKGSGIQPGSVVYNIMISCLGRAGRMGHALKVFQEMKQAGVKPNAVTLSTVMEIYSRSGK 233

Query: 413 PDQARSNFDY----------------------------------MIRLGHKPDDRCTASM 438
             +    F +                                  M+  GH+P+D    +M
Sbjct: 234 VMEGLGIFHHMRQDLACDIIVYNAVIKMCREAGLVPEAEQYLREMVEYGHQPNDWTYRNM 293

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           I+ Y K  +  +A  +  +L + G++P   +YT L+   G  +   + +++L ++     
Sbjct: 294 ISLYAKNGMAVEAQRMFSQLVEAGYQPDVMSYTSLLQGYGNAKDYEKVQEILHEMVSANC 353

Query: 499 AP 500
           AP
Sbjct: 354 AP 355



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/216 (21%), Positives = 99/216 (45%), Gaps = 3/216 (1%)

Query: 323 FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAG 382
           F  +   YN M+       Q +L   + + MI +GI      Y  L+    +C     A 
Sbjct: 39  FNLNIYTYNVMLKVLRRGQQWELSQQIAEDMINAGIRPDNITYSTLISCANRCNYQDAAM 98

Query: 383 QITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAY 442
              + M   +  P   + + +++ YG+ G  D+A + ++ + + G KPD     +M+  +
Sbjct: 99  AWFDRMHDAQCVPDAVTYSTMIDVYGKVGKYDEAVALYESVKKSGWKPDKVTYGTMVRLF 158

Query: 443 GKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPF 502
           G+   +  A+++  E++  G +PG   Y +++  LGR   +  A ++  ++ + G  P  
Sbjct: 159 GRAGYISAAVSIFDEMKGSGIQPGSVVYNIMISCLGRAGRMGHALKVFQEMKQAGVKPNA 218

Query: 503 KIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
               ++ ++Y+R+G   K ++ LG     ++ +  D
Sbjct: 219 VTLSTVMEIYSRSG---KVMEGLGIFHHMRQDLACD 251



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/252 (20%), Positives = 103/252 (40%), Gaps = 34/252 (13%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS +ID + K    ++A  + + + ++G  PD VT   +V ++ +AG +  A   F+ ++
Sbjct: 116 YSTMIDVYGKVGKYDEAVALYESVKKSGWKPDKVTYGTMVRLFGRAGYISAAVSIFDEMK 175

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G QP   VYN MI     AG+    + +   M  +G++ +      ++  +++ G V 
Sbjct: 176 GSGIQPGSVVYNIMISCLGRAGRMGHALKVFQEMKQAGVKPNAVTLSTVMEIYSRSGKVM 235

Query: 380 GAGQITNIMR-------------------------IEEF---------QPTLESCTLLVE 405
               I + MR                          E++         QP   +   ++ 
Sbjct: 236 EGLGIFHHMRQDLACDIIVYNAVIKMCREAGLVPEAEQYLREMVEYGHQPNDWTYRNMIS 295

Query: 406 AYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
            Y + G   +A+  F  ++  G++PD     S++  YG     +K   +L E+      P
Sbjct: 296 LYAKNGMAVEAQRMFSQLVEAGYQPDVMSYTSLLQGYGNAKDYEKVQEILHEMVSANCAP 355

Query: 466 GPATYTVLVDWL 477
               + V+++ L
Sbjct: 356 DERLWCVILNLL 367



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 55/116 (47%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +I    +   + +AE+ L++M E G  P+  T   ++ +Y+K G    A+  F  L 
Sbjct: 255 YNAVIKMCREAGLVPEAEQYLREMVEYGHQPNDWTYRNMISLYAKNGMAVEAQRMFSQLV 314

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             G+QPD   Y S++  Y NA   +    ++  M+++     E ++  +L     C
Sbjct: 315 EAGYQPDVMSYTSLLQGYGNAKDYEKVQEILHEMVSANCAPDERLWCVILNLLDAC 370


>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
          Length = 1393

 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 142/331 (42%), Gaps = 2/331 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +ID + K + +++A  +LK     G VPD VT   L++     G+++RA E F   +
Sbjct: 293 YNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQ 352

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G +PD  VYNS++      G     + +++ M   G     + Y  ++    + G++ 
Sbjct: 353 AKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNIS 412

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  + N   ++ + P + +   L++ Y +    D A    + M   G  PD     S++
Sbjct: 413 DATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVL 472

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
               K   +++      E+   G  P P TY +L++   R   + EA +++ K+S+ G  
Sbjct: 473 NGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLH 532

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P      +L   + R G  + A      LE K      D F  +I        +  A+++
Sbjct: 533 PDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKI 592

Query: 560 HGLMEAQGFAASERLKVALI--SSQTFNRQR 588
              M ++G  A       LI  S +T N  R
Sbjct: 593 FDEMLSKGHRADSYTYRVLIDGSCKTANVDR 623



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/329 (23%), Positives = 147/329 (44%), Gaps = 6/329 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ LI    K++  ++A   L++M   G +PD  T   ++  Y K   +  A E  
Sbjct: 254 DVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELL 313

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           +     GF PD+  Y S+I      G  +  + L +     GI+    +Y +L++     
Sbjct: 314 KDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQ 373

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A Q+ N M  E   P +++  +++    + G+   A    +  I  G+ PD    
Sbjct: 374 GLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTF 433

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I  Y K+  LD AL L+  + + G  P   TY  +++ L +   +NE  +   ++  
Sbjct: 434 NTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMIL 493

Query: 496 LGEAP-PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGF 552
            G  P P    + L + + R+   ++A + +  ++  +E + PD   F  +I G    G 
Sbjct: 494 KGCHPNPITYNI-LIENFCRSNKMEEASKVI--VKMSQEGLHPDAVSFNTLIYGFCRNGD 550

Query: 553 LQDAQRVHGLMEAQGFAASERLKVALISS 581
           L+ A  +   +E +G++A+      LI +
Sbjct: 551 LEGAYLLFQKLEEKGYSATADTFNTLIGA 579



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 117/248 (47%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           +  +V  ++ LID + K   L+ A +++++M E GI PD +T   +++   KAG ++   
Sbjct: 426 YLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVN 485

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           E F+ +   G  P+   YN +I  +  + + +    ++  M   G+      +  L+  F
Sbjct: 486 ETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGF 545

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + GD+ GA  +   +  + +  T ++   L+ A+    +   A   FD M+  GH+ D 
Sbjct: 546 CRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADS 605

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
                +I    K   +D+A   L+E+ K GF P  +T+  +++ L     + +A  ++  
Sbjct: 606 YTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHI 665

Query: 493 ISELGEAP 500
           + ++G  P
Sbjct: 666 MVKIGVVP 673



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/300 (21%), Positives = 121/300 (40%), Gaps = 4/300 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           ++EE    +++ Y+ +I+   K   + DA  ++      G +PD+ T   L+  Y K   
Sbjct: 386 MAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLK 445

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           LD A +  E +  +G  PD   YNS++     AG+          MI  G   +   Y  
Sbjct: 446 LDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNI 505

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+ +F +   +  A ++   M  E   P   S   L+  + + GD + A   F  +   G
Sbjct: 506 LIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKG 565

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
           +        ++I A+  K  +  A  +  E+   G      TY VL+D   +   ++ A 
Sbjct: 566 YSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAY 625

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK-KEQMGPDDFERIING 546
             L ++ + G  P      +   +     +  +  QA+G +    K  + P+  + I+N 
Sbjct: 626 MHLVEMIKKGFIPSMS---TFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPEVVDTILNA 682



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 62/316 (19%), Positives = 119/316 (37%), Gaps = 42/316 (13%)

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSK----------------------------- 304
            DA ++  +M    + P++     ++H   K                             
Sbjct: 168 HDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIW 227

Query: 305 ------AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
                 AG L  A    + +R++   PD   YN++I        P+  M  +  M+  G 
Sbjct: 228 IRGLCEAGRLPEAVRLVDGMRAYAV-PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGC 286

Query: 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418
              +  Y  ++  + +   V+ A ++      + F P   +   L+      GD ++A  
Sbjct: 287 LPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALE 346

Query: 419 NFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLG 478
            F+     G KPD     S++     + L+  AL ++ E+ ++G  P   TY ++++ L 
Sbjct: 347 LFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLC 406

Query: 479 RLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ-MGP 537
           ++  I++A  ++      G  P      +L D Y +     K   AL  +E   E  + P
Sbjct: 407 KMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCK---RLKLDSALQLVERMWEYGIAP 463

Query: 538 D--DFERIINGLLAGG 551
           D   +  ++NGL   G
Sbjct: 464 DTITYNSVLNGLCKAG 479



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 67/341 (19%), Positives = 130/341 (38%), Gaps = 36/341 (10%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y   I A+A+   L DA    ++M+     P       ++     A   D+A + +  + 
Sbjct: 53  YVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRML 112

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV----------------------------- 350
           + G  PD   +   + ++    +P + + L+                             
Sbjct: 113 AAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQ 172

Query: 351 --DMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYG 408
             D M+ + +  +   +  +L +  + GDV  AG +   +        L +  + +    
Sbjct: 173 LFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLC 232

Query: 409 QAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPA 468
           +AG   +A    D M R    PD     ++I    KK++  +A++ L  +   G  P   
Sbjct: 233 EAGRLPEAVRLVDGM-RAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDF 291

Query: 469 TYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFL 528
           TY  ++D   ++ ++ EA +LL      G  P      SL +     G  ++AL+   F 
Sbjct: 292 TYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALEL--FN 349

Query: 529 EAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQG 567
           EA+ + + PD   +  ++ GL   G +  A +V   M  +G
Sbjct: 350 EAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEG 390



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 68/287 (23%), Positives = 120/287 (41%), Gaps = 15/287 (5%)

Query: 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
           +  Y++AG L  A +AFE +      P    YN+++ A V+A        +   M+ +G+
Sbjct: 57  IRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGV 116

Query: 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418
                 +   LRSF  C   R    +  ++R    +  +  CT++   Y   G    AR 
Sbjct: 117 SPDLHTHTIRLRSF--CLTARPHIAL-RLLRALPHRGAVAYCTVVCGLYAH-GHTHDARQ 172

Query: 419 NFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLG 478
            FD M+     P+      ++ A  K+  + +A  LL ++ + G      TY + +  L 
Sbjct: 173 LFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLC 232

Query: 479 RLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL--QALGFLEAKKEQ-M 535
               + EA +L+  +     A P    V   +   R G+ KK++  +A+ +L     Q  
Sbjct: 233 EAGRLPEAVRLVDGMR--AYAVP---DVVTYNTLIR-GLCKKSMPQEAMHYLRRMMNQGC 286

Query: 536 GPDDF--ERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
            PDDF    II+G      +Q+A  +      +GF   +    +LI+
Sbjct: 287 LPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLIN 333



 Score = 39.3 bits (90), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 76/187 (40%), Gaps = 10/187 (5%)

Query: 177 EMILPE-EPKPITGKCKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLRE- 234
           EMIL    P PIT    LI +   S + EE    ++   +E L P  + +  L+      
Sbjct: 490 EMILKGCHPNPITYNI-LIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRN 548

Query: 235 ---QNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPD 291
              +   L F+  E    E+ +      ++ LI A + +  +  AE+I  +M   G   D
Sbjct: 549 GDLEGAYLLFQKLE----EKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRAD 604

Query: 292 IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVD 351
             T  VL+    K  N+DRA      +   GF P    +  +I +     +    + ++ 
Sbjct: 605 SYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIH 664

Query: 352 MMITSGI 358
           +M+  G+
Sbjct: 665 IMVKIGV 671


>gi|225454948|ref|XP_002277434.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Vitis vinifera]
          Length = 835

 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 108/228 (47%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +S  + + NV  Y+ LIDA+ K  CLEDA  +  +M    +VPD+VT T +++   K+G 
Sbjct: 78  ISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGK 137

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           ++ AK  F  +   G  P++  Y ++I +    G       L   M+  GI     +Y A
Sbjct: 138 VEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTA 197

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    + G    A  +  ++  E   P   + + L++ + + GD ++       M    
Sbjct: 198 LMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKH 257

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
             P+    +S++  Y KK LL++A++++ ++ +    P    Y  L+D
Sbjct: 258 IFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLID 305



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/283 (20%), Positives = 124/283 (43%), Gaps = 12/283 (4%)

Query: 251 ESFQTNVRD---------YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM 301
           ESF T +R          ++ +I+A+ KE  L +A ++L +M   G+ P+ +T  +LV  
Sbjct: 421 ESFHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQR 480

Query: 302 YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS 361
              AG +++  +    +   GF P    + +++ A   + +  + + + D ++  G++  
Sbjct: 481 LCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVILHMHDQLVGMGVKLD 540

Query: 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421
              Y  L+ +F + G +R A  +   M  +     + +   L+  Y  +    +A +   
Sbjct: 541 LSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAFAVHS 600

Query: 422 YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ 481
            M+  G  P+      ++       L+ +A  L+ ++++ G  P   TY +LV   G++ 
Sbjct: 601 QMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIG 660

Query: 482 LINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQA 524
            + E  +L  ++   G  P  +    L   +A+    KK  QA
Sbjct: 661 NMKECVKLYCEMITKGFVPKTRTYNVLISCFAKG---KKMSQA 700



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 129/284 (45%), Gaps = 3/284 (1%)

Query: 218 LQPSRIDWINLLDRLREQNTQL-YFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L P R+++ +++D   +   +   F +A+  ++E+S   +V  Y+ LI+   K    E +
Sbjct: 363 LLPDRVNYTSMMDGFFKAGKESDAFNIAQ-EMTEKSSGFDVVAYNVLINGLFKLGKYE-S 420

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
           E     M + G+ PD  T   +++ Y K GNL  A +    ++S+G +P+    N ++  
Sbjct: 421 ESFHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQR 480

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
              AG+ +  M L++ M+  G   +   + A+L + ++         + + +     +  
Sbjct: 481 LCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVILHMHDQLVGMGVKLD 540

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           L +   L+  + + G   +A   F  M+  G   D     ++I  Y   + L KA  +  
Sbjct: 541 LSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAFAVHS 600

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
           ++  +G  P   TY +L+  L   +LI EA  L+ ++ E G  P
Sbjct: 601 QMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVP 644



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/303 (21%), Positives = 130/303 (42%), Gaps = 5/303 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  ++ LID + +   +  A  +L+ M   G  PDIVT   L++ + K G+L  AK+  
Sbjct: 16  SVEHFNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLM 75

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +     +P+   Y ++I AY  +   +  + + D M    +      Y  ++    + 
Sbjct: 76  GEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKS 135

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G V  A  +   M      P   S   L+++  + G+  +A      M+  G   D    
Sbjct: 136 GKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVY 195

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            +++    K  + + A ++   L ++   P   TY+ L+D   +L  +N+ E LL ++ E
Sbjct: 196 TALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEE 255

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
               P   +  S+ D Y + G+  +A+  +   +  +  + P+ F   + G L  G+ + 
Sbjct: 256 KHIFPNVIVYSSIVDGYTKKGLLNEAMDVMR--KMVQRNILPNVF---VYGTLIDGYFKA 310

Query: 556 AQR 558
            QR
Sbjct: 311 DQR 313



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 80/373 (21%), Positives = 150/373 (40%), Gaps = 20/373 (5%)

Query: 218 LQPSRIDWINLLD-----RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC 272
           L+P+ I +  L+D     +  E    +Y +     ++ +S   +V  Y+ +++   K   
Sbjct: 83  LEPNVITYTTLIDAYCKSQCLEDALYMYDE-----MTVKSLVPDVVTYTCIMNGLCKSGK 137

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           +E+A+ + ++M E G+VP+  +   L+    K GN+  A      +   G   D  VY +
Sbjct: 138 VEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTA 197

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           ++     AG       +  +++   +  +   Y AL+    + GDV     +   M  + 
Sbjct: 198 LMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKH 257

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P +   + +V+ Y + G  ++A      M++    P+     ++I  Y K +    AL
Sbjct: 258 IFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIAL 317

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
           +L  E++  G E         V+ L R   + EA++L   +   G  P      S+ D +
Sbjct: 318 DLFKEMKSRGLEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGF 377

Query: 513 ARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572
            +AG E  A      +  K        +  +INGL   G   +++  H  M   G A   
Sbjct: 378 FKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGLFKLG-KYESESFHTGMRQLGLAP-- 434

Query: 573 RLKVALISSQTFN 585
                   S TFN
Sbjct: 435 -------DSATFN 440



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/264 (21%), Positives = 112/264 (42%)

Query: 296 TVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMIT 355
            VL+  Y + G + RA E  E +++ G  PD   YN+++  +   G       L+  +  
Sbjct: 21  NVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISL 80

Query: 356 SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ 415
             +E +   Y  L+ ++ +   +  A  + + M ++   P + + T ++    ++G  ++
Sbjct: 81  VNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVEE 140

Query: 416 ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
           A+S F  M  +G  P+    A++I +  K+  + +A  L   +   G       YT L+D
Sbjct: 141 AKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALMD 200

Query: 476 WLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQM 535
            L +  + N AE +   + E    P      +L D + + G   K    L  +E K    
Sbjct: 201 GLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFP 260

Query: 536 GPDDFERIINGLLAGGFLQDAQRV 559
               +  I++G    G L +A  V
Sbjct: 261 NVIVYSSIVDGYTKKGLLNEAMDV 284



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/200 (21%), Positives = 87/200 (43%)

Query: 358 IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
           I RS E +  L+  + + G++  A ++   M+ E   P + +   L+  + + GD   A+
Sbjct: 13  IRRSVEHFNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAK 72

Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
                +  +  +P+     ++I AY K   L+ AL +  E+      P   TYT +++ L
Sbjct: 73  KLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGL 132

Query: 478 GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP 537
            +   + EA+ +  ++ E+G  P      +L D   + G   +A    G +  +      
Sbjct: 133 CKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDV 192

Query: 538 DDFERIINGLLAGGFLQDAQ 557
             +  +++GL   G   +A+
Sbjct: 193 VVYTALMDGLFKAGMANNAE 212



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 1/103 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E     N   Y  L+  H K   +++  ++  +M   G VP   T  VL+  ++K   
Sbjct: 637 MKERGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAKGKK 696

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMA-YVNAGQPKLGMSL 349
           + +AKE  + ++  G  P+   Y+ +I   Y  + QP+L  SL
Sbjct: 697 MSQAKELMQEMQVRGIPPNSSTYDILICGWYKLSKQPELNKSL 739



 Score = 40.4 bits (93), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 41/196 (20%), Positives = 84/196 (42%), Gaps = 4/196 (2%)

Query: 386 NIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKK 445
           N  +  E + ++E   +L++ Y + G+  +A    + M   G  PD     +++  + K 
Sbjct: 6   NTYQHPEIRRSVEHFNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKI 65

Query: 446 NLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQ 505
             L  A  L+ E+     EP   TYT L+D   + Q + +A  +  +++     P     
Sbjct: 66  GDLFTAKKLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTY 125

Query: 506 VSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFE--RIINGLLAGGFLQDAQRVHGLM 563
             + +   ++G  ++A     F E ++  + P+ F    +I+ L   G + +A  + G M
Sbjct: 126 TCIMNGLCKSGKVEEAKSV--FREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRM 183

Query: 564 EAQGFAASERLKVALI 579
             +G      +  AL+
Sbjct: 184 VVRGIGFDVVVYTALM 199


>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 592

 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 142/321 (44%), Gaps = 6/321 (1%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           E FQ N   Y  LI    K      A R+L+ M +    P+++T   ++    K   ++ 
Sbjct: 173 EGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNE 232

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A   F  + + G  P+   YNS+I       + K   +L++ M+ S I  +  I+  L+ 
Sbjct: 233 ALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVD 292

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
           +  + G V  A  + ++M     +P + + T L++ +    + D+A   FD M+R G  P
Sbjct: 293 ALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAP 352

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           +    +++I  Y K   +DKA+ L  E+ +    P   TY  L+  L  +  + +A  L 
Sbjct: 353 NVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIALF 412

Query: 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEA-KKEQMGPD--DFERIINGL 547
            ++   G+ P       L D   +    +   QA+  L+A +   + PD   +  +I+G+
Sbjct: 413 HEMVASGQIPDLVTYRILLDYLCKT---RHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGM 469

Query: 548 LAGGFLQDAQRVHGLMEAQGF 568
              G L+ A  +   + ++G 
Sbjct: 470 CRVGELEAAGDLFSSLSSKGL 490



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/327 (21%), Positives = 139/327 (42%), Gaps = 13/327 (3%)

Query: 211 LAEWKEL-----------LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVR 258
            +EWK +           + P+ + +  L+D L +E    +   V + V+ +   + +V 
Sbjct: 262 FSEWKHVATLMNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVD-VMIQRGVEPDVV 320

Query: 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318
            Y+ L+D H   + +++A+++   M   G  P++++ + L++ Y K   +D+A   FE +
Sbjct: 321 TYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNVISYSTLINGYCKIQRIDKAMYLFEEM 380

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
                 P+   YN++I    + G+ +  ++L   M+ SG       Y  LL    +   +
Sbjct: 381 CQRELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHL 440

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             A  +   +      P ++S  ++++   + G+ + A   F  +   G  PD      M
Sbjct: 441 DQAMAMLKAIEGSNLAPDIQSYNIVIDGMCRVGELEAAGDLFSSLSSKGLHPDVWTYTIM 500

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           I     + LL +A  L  E+  DG  P   TY ++     R      A QLL ++   G 
Sbjct: 501 INGLCLQGLLAEATKLFREMNTDGCSPDDCTYNLITRGFLRNNETLSAIQLLQEMLGRGF 560

Query: 499 APPFKIQVSLCDMYARAGIEKKALQAL 525
           +        + +M +  G+++   Q L
Sbjct: 561 SADASTITLIVEMLSDDGLDQSVKQIL 587



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 76/365 (20%), Positives = 154/365 (42%), Gaps = 12/365 (3%)

Query: 211 LAEWKELLQ----PSRIDWINLLDRLREQNTQLYFKVAELVLSEESF--QTNVRDYSKLI 264
           L+ +  +L     PS +D+  +L  +   N + Y  V  L    +S    ++V   + +I
Sbjct: 59  LSSFNRMLHMQPPPSVVDFAKILTSI--ANMKHYSTVLSLSKQMDSLGIPSDVYTLAIVI 116

Query: 265 DAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQ 324
           ++    N ++    +L K+ + G  PD  T T L+      G +  A   F+ +   GFQ
Sbjct: 117 NSFCHLNRVDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEGFQ 176

Query: 325 PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQI 384
           P+   Y ++I      G  +  + L+  M+    E +   Y  ++    +   V  A  I
Sbjct: 177 PNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEALNI 236

Query: 385 TNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGK 444
            + M  +   P + +   ++    +  +     +  + M+     P+     +++ A  K
Sbjct: 237 FSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDALCK 296

Query: 445 KNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKI 504
           + ++  A +++  + + G EP   TYT L+D       ++EA+++   +   G AP    
Sbjct: 297 EGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNVIS 356

Query: 505 QVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGL 562
             +L + Y +     KA+    F E  + ++ P+   +  +I+GL   G L+DA  +   
Sbjct: 357 YSTLINGYCKIQRIDKAMYL--FEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIALFHE 414

Query: 563 MEAQG 567
           M A G
Sbjct: 415 MVASG 419



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 54/314 (17%), Positives = 116/314 (36%), Gaps = 35/314 (11%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V D++K++ + A          + K+M+  GI  D+ T  ++++ +     +D      
Sbjct: 73  SVVDFAKILTSIANMKHYSTVLSLSKQMDSLGIPSDVYTLAIVINSFCHLNRVDFGFSVL 132

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G QPD   + ++I      G+    + L D M+  G + +   Y  L+    + 
Sbjct: 133 AKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEGFQPNGVTYGTLIHGLCKV 192

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G+ R A ++   M  +  +P        V  Y                            
Sbjct: 193 GNSRAAIRLLRSMVQKNCEPN-------VITYN--------------------------- 218

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I    K   +++ALN+  E+   G  P  +TY  ++  L +         L+ ++ +
Sbjct: 219 -TIIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVD 277

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
               P   I  +L D   + G+   A   +  +  +  +     +  +++G      + +
Sbjct: 278 SKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDE 337

Query: 556 AQRVHGLMEAQGFA 569
           A +V   M  +G A
Sbjct: 338 ADKVFDTMVRKGCA 351


>gi|218196467|gb|EEC78894.1| hypothetical protein OsI_19266 [Oryza sativa Indica Group]
 gi|222630938|gb|EEE63070.1| hypothetical protein OsJ_17878 [Oryza sativa Japonica Group]
          Length = 939

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 149/338 (44%), Gaps = 9/338 (2%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENG-IVPDIVTSTVLVHMYSKAG 306
           L  +    NV  Y+ L+  + K+  +E+AER++K+M E G IV D V   ++++ Y + G
Sbjct: 279 LQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRG 338

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            +D A      +R  G   +  VYN+MI      G+ +    ++  M   G+   +  Y 
Sbjct: 339 RMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYN 398

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+  + + G +R A ++  +M       T  +   L++ +      D A   +  M++ 
Sbjct: 399 TLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKR 458

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G  P++   ++++    K    ++ALNL  E    G      T+  +++ L ++  + EA
Sbjct: 459 GVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEA 518

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
           E+LL ++ EL   P      +L D Y + G     L     L  K E +G      + N 
Sbjct: 519 EELLDRMKELRCPPDSLTYRTLFDGYCKLG----QLGTATHLMNKMEHLGFAPSVEMFNS 574

Query: 547 LLAGGFL----QDAQRVHGLMEAQGFAASERLKVALIS 580
            + G F+         +H  M A+G + +     ALI+
Sbjct: 575 FITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIA 612



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 90/410 (21%), Positives = 164/410 (40%), Gaps = 9/410 (2%)

Query: 169 AEKIHERGEMILPEEPKPITGKCKLITDKILSLEKEEDPSPLLAEWKELLQ----PSRI- 223
           AE++      + P   +    + +L  D  L L +     P L    +LL       R  
Sbjct: 58  AERLLASSSPLTPALLQAALRRVRLDPDAALHLFRLAPSRPSLVSHAQLLHILARARRFH 117

Query: 224 DWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKM 283
           D   LL  L      L+  +AE+      F  +   +  L+ AHA    L  A  +   M
Sbjct: 118 DARALLSSLPPHAEPLFPHLAEVY---RDFTFSAVSFDLLLRAHADAGQLSSALNVFDGM 174

Query: 284 NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343
            + G  P + +   L++   ++G+   A   +  +R  G  PD+     M  AY   G+ 
Sbjct: 175 GKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQMRIAGVLPDEFTVAIMAKAYCRDGRV 234

Query: 344 KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403
              +  V+ M   G+E +   Y A++  +   G    A +I   ++ +   P + + TLL
Sbjct: 235 AQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLL 294

Query: 404 VEAYGQAGDPDQARSNFDYMIRLGH-KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           V+ Y + G  ++A      M   G    D+     MI  Y ++  +D A  +  E+   G
Sbjct: 295 VKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAG 354

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522
                  Y  +++ L +L  + E +++L ++ ++G  P      +L D Y R G  +KA 
Sbjct: 355 IHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAF 414

Query: 523 QALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572
           +    +           +  ++ G  +   + DA R+  LM  +G A +E
Sbjct: 415 EMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNE 464



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/323 (21%), Positives = 129/323 (39%), Gaps = 13/323 (4%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +S      N+  Y  LI    KE  L +A  +  +M  NG+ P++   + L+  + K G 
Sbjct: 595 MSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGK 654

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMI--MAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
           +D A    + L +    P   +    I  +++V           VD +       +  ++
Sbjct: 655 VDEANLVLQKLVNIDMIPGCSISTIEIDKISHV-----------VDTIADGNPHSANVMW 703

Query: 366 LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
             ++    + G +  A  +   +R + F P   + + L+     +G  D+A S  D M+ 
Sbjct: 704 NVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLS 763

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
            G  P+     S+I    K   L +A+NL  +L+  G  P   TY  L+D   +     E
Sbjct: 764 AGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTE 823

Query: 486 AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIIN 545
           A +L  K+ E G  P       L       G  ++A++ L  +           +  +I+
Sbjct: 824 AFKLKQKMVEEGIQPTVITYSILIYGLCTQGYMEEAIKLLDQMIENNVDPNYITYCTLIH 883

Query: 546 GLLAGGFLQDAQRVHGLMEAQGF 568
           G +  G +++  +++  M  +G 
Sbjct: 884 GYIKSGNMEEISKLYDEMHIRGL 906



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/267 (21%), Positives = 112/267 (41%), Gaps = 31/267 (11%)

Query: 234 EQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIV 293
            +   LYF++            NV   S L+    KE  +++A  +L+K+    ++P   
Sbjct: 621 HEACNLYFEMVN-----NGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCS 675

Query: 294 TST--------------------------VLVHMYSKAGNLDRAKEAFESLRSHGFQPDK 327
            ST                          V++    K+G +  AK  FESLR+  F PD 
Sbjct: 676 ISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDN 735

Query: 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNI 387
             Y+S+I     +G      SL D+M+++G+  +   Y +L+    + G +  A  + N 
Sbjct: 736 FTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNK 795

Query: 388 MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447
           ++ +   P   +   L++ Y + G   +A      M+  G +P     + +I     +  
Sbjct: 796 LQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGIQPTVITYSILIYGLCTQGY 855

Query: 448 LDKALNLLLELEKDGFEPGPATYTVLV 474
           +++A+ LL ++ ++  +P   TY  L+
Sbjct: 856 MEEAIKLLDQMIENNVDPNYITYCTLI 882



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/219 (21%), Positives = 96/219 (43%), Gaps = 8/219 (3%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++ +I    K   + DA+ + + +     +PD  T + L+H  + +G++D A    + + 
Sbjct: 703 WNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVML 762

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           S G  P+   YNS+I     +G+    ++L + + + GI  +   Y  L+  + + G   
Sbjct: 763 SAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTT 822

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++   M  E  QPT+ + ++L+      G  ++A    D MI     P+     ++I
Sbjct: 823 EAFKLKQKMVEEGIQPTVITYSILIYGLCTQGYMEEAIKLLDQMIENNVDPNYITYCTLI 882

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLG 478
             Y K   +++   L  E+   G  P         +W+G
Sbjct: 883 HGYIKSGNMEEISKLYDEMHIRGLLP--------TNWIG 913



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 1/156 (0%)

Query: 241 FKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
           F + +++LS      N+  Y+ LI    K   L  A  +  K+   GI P+ +T   L+ 
Sbjct: 755 FSLRDVMLSA-GLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLID 813

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
            Y K G    A +  + +   G QP    Y+ +I      G  +  + L+D MI + ++ 
Sbjct: 814 EYCKEGKTTEAFKLKQKMVEEGIQPTVITYSILIYGLCTQGYMEEAIKLLDQMIENNVDP 873

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           +   Y  L+  + + G++    ++ + M I    PT
Sbjct: 874 NYITYCTLIHGYIKSGNMEEISKLYDEMHIRGLLPT 909



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 60/115 (52%), Gaps = 2/115 (1%)

Query: 218 LQPSRIDWINLLDR-LREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           + P+ I +  L+D   +E  T   FK+ + ++ EE  Q  V  YS LI     +  +E+A
Sbjct: 801 ISPNGITYNTLIDEYCKEGKTTEAFKLKQKMV-EEGIQPTVITYSILIYGLCTQGYMEEA 859

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYN 331
            ++L +M EN + P+ +T   L+H Y K+GN++   + ++ +   G  P   + N
Sbjct: 860 IKLLDQMIENNVDPNYITYCTLIHGYIKSGNMEEISKLYDEMHIRGLLPTNWIGN 914



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 65/304 (21%), Positives = 111/304 (36%), Gaps = 30/304 (9%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  ++ +I+   K   + +AE +L +M E    PD +T   L   Y K G L  A    
Sbjct: 498 NVITFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLM 557

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   GF P  +++NS I  +  A Q      +   M   G+  +   Y AL+  + + 
Sbjct: 558 NKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKE 617

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G++  A  +   M      P +  C+ L+  + + G  D+A      ++ +   P   C+
Sbjct: 618 GNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPG--CS 675

Query: 436 AS----------------------------MIAAYGKKNLLDKALNLLLELEKDGFEPGP 467
            S                            +I    K   +  A +L   L    F P  
Sbjct: 676 ISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDN 735

Query: 468 ATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGF 527
            TY+ L+        I+EA  L   +   G  P      SL     ++G   +A+     
Sbjct: 736 FTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNK 795

Query: 528 LEAK 531
           L++K
Sbjct: 796 LQSK 799



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 60/318 (18%), Positives = 126/318 (39%), Gaps = 27/318 (8%)

Query: 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320
           S L+D   K    E A  + K+    G+  +++T   +++   K G +  A+E  + ++ 
Sbjct: 468 STLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKE 527

Query: 321 HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRG 380
               PD   Y ++   Y   GQ      L++ M   G   S E++ + +           
Sbjct: 528 LRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHK 587

Query: 381 AGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIA 440
              I + M      P L +   L+  + + G+  +A + +  M+  G  P+    +++++
Sbjct: 588 VNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMS 647

Query: 441 AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
            + K+  +D+A  +L +L      PG +  T+ +D +  +            +  + +  
Sbjct: 648 CFYKEGKVDEANLVLQKLVNIDMIPGCSISTIEIDKISHV------------VDTIADGN 695

Query: 501 PFKIQV-------SLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF--ERIINGLLAGG 551
           P    V        LC    R    K   ++L     + ++  PD+F    +I+G  A G
Sbjct: 696 PHSANVMWNVIIFGLCKS-GRIADAKSLFESL-----RNKRFLPDNFTYSSLIHGCAASG 749

Query: 552 FLQDAQRVHGLMEAQGFA 569
            + +A  +  +M + G  
Sbjct: 750 SIDEAFSLRDVMLSAGLT 767



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/257 (18%), Positives = 101/257 (39%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LID + +E  +  A  + + M  NG+    +T   L+  +     +D A   +  + 
Sbjct: 397 YNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLML 456

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P++   ++++     AG+ +  ++L    +  G+ ++   +  ++    + G + 
Sbjct: 457 KRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMA 516

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++ + M+     P   +   L + Y + G    A    + M  LG  P      S I
Sbjct: 517 EAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFI 576

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             +       K  ++  E+   G  P   TY  L+    +   ++EA  L  ++   G  
Sbjct: 577 TGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMN 636

Query: 500 PPFKIQVSLCDMYARAG 516
           P   I  +L   + + G
Sbjct: 637 PNVFICSALMSCFYKEG 653


>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 545

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/331 (22%), Positives = 140/331 (42%), Gaps = 39/331 (11%)

Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311
           S + NV  YS +ID   K+  +++A  +  +M   GI PD+VT ++LV  +   G L+RA
Sbjct: 193 SIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRA 252

Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
            +    +      PD   Y  ++ A    G+ K   +++ +M+ + +     +Y      
Sbjct: 253 IDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVY------ 306

Query: 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
                                        + L++ Y    + + A+  F  M ++G  PD
Sbjct: 307 -----------------------------STLMDGYCLVNEVNNAKRVFYTMTQMGVTPD 337

Query: 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
             C + MI    K   +D+ALNL  E+ +    P   TYT L+D L +   I+    L  
Sbjct: 338 VHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFD 397

Query: 492 KISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLA 549
           ++ + G+ P      +L D   + G   +A+    F + K + + P+   F  +++GL  
Sbjct: 398 EMLDRGQPPDVITYNNLIDALCKNGHLDRAIAL--FNKMKDQAIRPNVYTFTILLDGLCK 455

Query: 550 GGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
            G L++A      +  +G+  + R    +I+
Sbjct: 456 VGRLKNALEFFQDLLTKGYCLNVRTYTVMIN 486



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 103/228 (45%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           V+ +     +V  YS L+D +   N + +A+R+   M + G+ PD+   +++++   K  
Sbjct: 293 VMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIK 352

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            +D A   FE +      PD   Y S+I     +G+      L D M+  G       Y 
Sbjct: 353 RVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYN 412

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+ +  + G +  A  + N M+ +  +P + + T+L++   + G    A   F  ++  
Sbjct: 413 NLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTK 472

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
           G+  + R    MI    K+ LLD+AL L   +E +G      T+ +++
Sbjct: 473 GYCLNVRTYTVMINGLCKEGLLDEALALQSRMEDNGCISDAVTFEIMI 520



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/276 (21%), Positives = 121/276 (43%), Gaps = 8/276 (2%)

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A  + K+M  + + PD  T  ++++ +   G +  A      +   G+QP+    N+++ 
Sbjct: 77  AISLYKQMELSEVEPDYFTLNIIINCFCHFGQVVLAFSGVSKILKLGYQPNTITLNTLMK 136

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE--EF 393
                G+ K  +   D ++  G   S   Y  L+    + G+ R A ++  + RIE    
Sbjct: 137 GLCLEGKVKEALRFHDKVLAQGFRLSGISYGILINGVCKIGETRAAIRL--LRRIERWSI 194

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
           +P +   +++++   +    D+A   +  M+  G  PD    + +++ +     L++A++
Sbjct: 195 RPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAID 254

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
           LL E+  +   P   TYT+LVD L +   + EAE +L  + +        +  +L D Y 
Sbjct: 255 LLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYC 314

Query: 514 RAGIEKKALQALGFLEAKKEQMGPD--DFERIINGL 547
                  A +   F    +  + PD   +  +INGL
Sbjct: 315 LVNEVNNAKRV--FYTMTQMGVTPDVHCYSIMINGL 348



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 54/117 (46%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ LIDA  K   L+ A  +  KM +  I P++ T T+L+    K G L  A E F
Sbjct: 407 DVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTILLDGLCKVGRLKNALEFF 466

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           + L + G+  + + Y  MI      G     ++L   M  +G       +  ++R+F
Sbjct: 467 QDLLTKGYCLNVRTYTVMINGLCKEGLLDEALALQSRMEDNGCISDAVTFEIMIRAF 523


>gi|223635748|sp|Q9LVQ5.2|PP432_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g55840
          Length = 1096

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 128/307 (41%), Gaps = 16/307 (5%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRD--------YSKLIDAHAK 269
           L PS + +  LLD L         K AE  L+   +    R+        Y+ +ID   K
Sbjct: 364 LTPSEVSYGVLLDGL--------CKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCK 415

Query: 270 ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKV 329
              L++A  +L +M+++GI PDIVT + L++ + K G    AKE    +   G  P+  +
Sbjct: 416 NGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGII 475

Query: 330 YNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389
           Y+++I      G  K  + + + MI  G  R    +  L+ S  + G V  A +    M 
Sbjct: 476 YSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMT 535

Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD 449
            +   P   S   L+  YG +G+  +A S FD M ++GH P      S++    K   L 
Sbjct: 536 SDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLR 595

Query: 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLC 509
           +A   L  L           Y  L+  + +   + +A  L G++ +    P      SL 
Sbjct: 596 EAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLI 655

Query: 510 DMYARAG 516
               R G
Sbjct: 656 SGLCRKG 662



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/347 (21%), Positives = 146/347 (42%), Gaps = 35/347 (10%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  ++ LI+    E   E +  +++KM ++G  P IVT   ++H Y K G    A E  
Sbjct: 192 DVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELL 251

Query: 316 ESLRSHG-----------------------------------FQPDKKVYNSMIMAYVNA 340
           + ++S G                                     P++  YN++I  + N 
Sbjct: 252 DHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNE 311

Query: 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
           G+  +   L++ M++ G+  +   + AL+      G+ + A ++  +M  +   P+  S 
Sbjct: 312 GKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSY 371

Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
            +L++   +  + D AR  +  M R G          MI    K   LD+A+ LL E+ K
Sbjct: 372 GVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSK 431

Query: 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKK 520
           DG +P   TY+ L++   ++     A++++ +I  +G +P   I  +L     R G  K+
Sbjct: 432 DGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKE 491

Query: 521 ALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
           A++    +  +        F  ++  L   G + +A+     M + G
Sbjct: 492 AIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDG 538



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/283 (20%), Positives = 114/283 (40%), Gaps = 4/283 (1%)

Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338
            LK+M +  I PD+ T  +L+++    G+ +++    + +   G+ P    YN+++  Y 
Sbjct: 180 FLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYC 239

Query: 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398
             G+ K  + L+D M + G++     Y  L+    +   +     +   MR     P   
Sbjct: 240 KKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEV 299

Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
           +   L+  +   G    A    + M+  G  P+     ++I  +  +    +AL +   +
Sbjct: 300 TYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMM 359

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
           E  G  P   +Y VL+D L +    + A     ++   G          + D   + G  
Sbjct: 360 EAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFL 419

Query: 519 KKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRV 559
            +A+  L   E  K+ + PD   +  +ING    G  + A+ +
Sbjct: 420 DEAVVLLN--EMSKDGIDPDIVTYSALINGFCKVGRFKTAKEI 460



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 140/337 (41%), Gaps = 6/337 (1%)

Query: 218 LQPSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L P+ + +  L+D  + E N +   K+  ++ ++    + V  Y  L+D   K    + A
Sbjct: 329 LSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEV-SYGVLLDGLCKNAEFDLA 387

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
                +M  NG+    +T T ++    K G LD A      +   G  PD   Y+++I  
Sbjct: 388 RGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALING 447

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           +   G+ K    +V  +   G+  +  IY  L+ +  + G ++ A +I   M +E     
Sbjct: 448 FCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRD 507

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
             +  +LV +  +AG   +A      M   G  P+      +I  YG      KA ++  
Sbjct: 508 HFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFD 567

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
           E+ K G  P   TY  L+  L +   + EAE+ L  +  +  A    +  +L     ++G
Sbjct: 568 EMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSG 627

Query: 517 IEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGG 551
              KA+   G  E  +  + PD   +  +I+GL   G
Sbjct: 628 NLAKAVSLFG--EMVQRSILPDSYTYTSLISGLCRKG 662



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 76/369 (20%), Positives = 147/369 (39%), Gaps = 6/369 (1%)

Query: 215 KELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEE-SF--QTNVRDYSKLIDAHAKEN 271
           K ++ P+ + +  L++    +   L   +A  +L+E  SF    N   ++ LID H  E 
Sbjct: 291 KRMIHPNEVTYNTLINGFSNEGKVL---IASQLLNEMLSFGLSPNHVTFNALIDGHISEG 347

Query: 272 CLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYN 331
             ++A ++   M   G+ P  V+  VL+    K    D A+  +  ++ +G    +  Y 
Sbjct: 348 NFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYT 407

Query: 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391
            MI      G     + L++ M   GI+     Y AL+  F + G  + A +I   +   
Sbjct: 408 GMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRV 467

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
              P     + L+    + G   +A   ++ MI  GH  D      ++ +  K   + +A
Sbjct: 468 GLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEA 527

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
              +  +  DG  P   ++  L++  G      +A  +  +++++G  P F    SL   
Sbjct: 528 EEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKG 587

Query: 512 YARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAAS 571
             + G  ++A + L  L A    +    +  ++  +   G L  A  + G M  +     
Sbjct: 588 LCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPD 647

Query: 572 ERLKVALIS 580
                +LIS
Sbjct: 648 SYTYTSLIS 656



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 87/429 (20%), Positives = 178/429 (41%), Gaps = 25/429 (5%)

Query: 164  KWTEVAEKIHERGEM----ILPEE---PKPITGKCKLITDKILSLEKEEDPSPLLAEWKE 216
            K   +A+ +   GEM    ILP+       I+G C+     I  L  +E      AE + 
Sbjct: 625  KSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKE------AEARG 678

Query: 217  LLQPSRIDWINLLDRLREQN---TQLYFK--VAELVLSEESFQTNVRDYSKLIDAHAKEN 271
             + P+++ +   +D + +       +YF+  +  L  + +   TN      +ID +++  
Sbjct: 679  NVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNA-----MIDGYSRMG 733

Query: 272  CLEDAERILKKM-NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVY 330
             +E    +L +M N+NG  P++ T  +L+H YSK  ++  +   + S+  +G  PDK   
Sbjct: 734  KIEKTNDLLPEMGNQNG-GPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTC 792

Query: 331  NSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRI 390
            +S+++    +   ++G+ ++   I  G+E     +  L+      G++  A  +  +M  
Sbjct: 793  HSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTS 852

Query: 391  EEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDK 450
                   ++C  +V    +     ++R     M + G  P+ R    +I    +   +  
Sbjct: 853  LGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKT 912

Query: 451  ALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCD 510
            A  +  E+      P     + +V  L +    +EA  LL  + ++   P      +L  
Sbjct: 913  AFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMH 972

Query: 511  MYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAA 570
            +  + G   +AL+    +     ++    +  +I GL A G +  A  ++  M+  GF A
Sbjct: 973  LCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDGFLA 1032

Query: 571  SERLKVALI 579
            +     ALI
Sbjct: 1033 NATTYKALI 1041



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 113/283 (39%), Gaps = 14/283 (4%)

Query: 284 NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343
           N N  V DI     L+ +Y + G +  + E F  +  +GF P     N+++ + V +G+ 
Sbjct: 120 NSNPSVYDI-----LIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGED 174

Query: 344 KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403
               S +  M+   I      +  L+      G    +  +   M    + PT+ +   +
Sbjct: 175 VSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTV 234

Query: 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM-IAAYGKKNLLDKALNLLLELEKDG 462
           +  Y + G    A    D+M   G   D  CT +M I    + N + K   LL ++ K  
Sbjct: 235 LHWYCKKGRFKAAIELLDHMKSKGVDAD-VCTYNMLIHDLCRSNRIAKGYLLLRDMRKRM 293

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522
             P   TY  L++       +  A QLL ++   G +P      +L D +   G  K+AL
Sbjct: 294 IHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEAL 353

Query: 523 QALGFLEAKKEQMGPDDFERIINGL-------LAGGFLQDAQR 558
           +    +EAK        +  +++GL       LA GF    +R
Sbjct: 354 KMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKR 396



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/239 (22%), Positives = 95/239 (39%), Gaps = 1/239 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+ A  K   L  A  +  +M +  I+PD  T T L+    + G    A    +   
Sbjct: 616 YNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAE 675

Query: 320 SHG-FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
           + G   P+K +Y   +     AGQ K G+   + M   G         A++  +++ G +
Sbjct: 676 ARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKI 735

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
                +   M  +   P L +  +L+  Y +  D   +   +  +I  G  PD     S+
Sbjct: 736 EKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSL 795

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           +    + N+L+  L +L      G E    T+ +L+        IN A  L+  ++ LG
Sbjct: 796 VLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLG 854



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 2/159 (1%)

Query: 215  KELLQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCL 273
            K+ + P    +I L++ L R  + +  F V E +++ +    NV + S ++ A AK    
Sbjct: 887  KQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAE-SAMVRALAKCGKA 945

Query: 274  EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
            ++A  +L+ M +  +VP I + T L+H+  K GN+  A E    + + G + D   YN +
Sbjct: 946  DEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVL 1005

Query: 334  IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
            I      G   L   L + M   G   +   Y AL+R  
Sbjct: 1006 ITGLCAKGDMALAFELYEEMKGDGFLANATTYKALIRGL 1044



 Score = 43.1 bits (100), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 46/226 (20%), Positives = 98/226 (43%), Gaps = 12/226 (5%)

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
            +Y  L+R + + G ++ + +I  +M +  F P++ +C  ++ +  ++G+     S    
Sbjct: 124 SVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKE 183

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
           M++    PD      +I     +   +K+  L+ ++EK G+ P   TY  ++ W  +   
Sbjct: 184 MLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGR 243

Query: 483 INEAEQLLGKISELG-EAPPFKIQVSLCDMYARAGIEKKALQALGFL---EAKKEQMGPD 538
              A +LL  +   G +A      + + D+     I K      G+L   + +K  + P+
Sbjct: 244 FKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAK------GYLLLRDMRKRMIHPN 297

Query: 539 D--FERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQ 582
           +  +  +ING    G +  A ++   M + G + +     ALI   
Sbjct: 298 EVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGH 343


>gi|255577256|ref|XP_002529510.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531026|gb|EEF32879.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 804

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 112/255 (43%), Gaps = 15/255 (5%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS LID   +    EDA+   +KM E+ I PD++  T+++   SKAG    A      + 
Sbjct: 304 YSCLIDGLFRARRFEDAQVWYRKMTEHNIKPDVILYTIMMKGLSKAGKFKDALRLLNEMT 363

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  PD   YN++I  Y + G      SL   +  +    S   Y  L+    + G V 
Sbjct: 364 ERGLVPDTHCYNALIKGYCDLGLLDEAKSLHLEISKNDCFSSACTYTILICGMCRSGLVG 423

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP--------- 430
            A QI N M      P++ +   L++ + +AG+ ++A+  F Y + +G  P         
Sbjct: 424 DAQQIFNEMEKHGCYPSVVTFNALIDGFCKAGNIEKAQLLF-YKMEIGRNPSLFLRLSQG 482

Query: 431 -----DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
                D     +M+       L+ KA N+L++L   GF P   TY +L+    +   IN 
Sbjct: 483 ANRVLDTASLQTMVEQLCDSGLILKAYNILMQLTDSGFAPNIITYNILIHGFCKAGNING 542

Query: 486 AEQLLGKISELGEAP 500
           A +L  ++   G +P
Sbjct: 543 AFKLFKELQLKGLSP 557



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 160/370 (43%), Gaps = 10/370 (2%)

Query: 194 ITDKILSLEKEEDP-SPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEES 252
           I++++L++    +P  P L      L PS + +I         N+ L F+          
Sbjct: 32  ISNEVLTIIDSVNPIEPALESKVPFLSPSIVTYI----IKNPPNSLLGFRFFIWASKFRR 87

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
            ++ V  ++ +ID   K+N  E   ++LK++   G        TVL+  Y+K   +++A 
Sbjct: 88  LRSWV-SHNMIIDMLIKDNGFELYWQVLKEIKRCGFSISADAFTVLIQAYAKMDMIEKAV 146

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           E+FE ++    +PD   YN+++   V      L + + + M+      +   +  L+   
Sbjct: 147 ESFEMMKDFDCKPDVFTYNTVLHVMVRKEVVLLALGIYNRMLKLNCLPNIATFSILIDGM 206

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + G  + A Q+ + M      P   + T+++    QA   D A   F  M   G  PD 
Sbjct: 207 CKSGKTQNALQMFDEMTQRRILPNKITYTIIISGLCQAQKADVAYRLFIAMKDHGCIPDS 266

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               +++  + K   +D+AL LL   EKD +      Y+ L+D L R +   +A+    K
Sbjct: 267 VTYNALLHGFCKLGRVDEALGLLKYFEKDRYVLDKQGYSCLIDGLFRARRFEDAQVWYRK 326

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAG 550
           ++E    P   +   +    ++AG  K AL+ L   E  +  + PD   +  +I G    
Sbjct: 327 MTEHNIKPDVILYTIMMKGLSKAGKFKDALRLLN--EMTERGLVPDTHCYNALIKGYCDL 384

Query: 551 GFLQDAQRVH 560
           G L +A+ +H
Sbjct: 385 GLLDEAKSLH 394



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/303 (23%), Positives = 121/303 (39%), Gaps = 36/303 (11%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ ++    ++  +  A  I  +M +   +P+I T ++L+    K+G    A + F
Sbjct: 160 DVFTYNTVLHVMVRKEVVLLALGIYNRMLKLNCLPNIATFSILIDGMCKSGKTQNALQMF 219

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + +      P+K  Y  +I     A +  +   L   M   G       Y ALL  F + 
Sbjct: 220 DEMTQRRILPNKITYTIIISGLCQAQKADVAYRLFIAMKDHGCIPDSVTYNALLHGFCKL 279

Query: 376 GDVRGA--------------------GQITNIMRIEEFQ---------------PTLESC 400
           G V  A                      I  + R   F+               P +   
Sbjct: 280 GRVDEALGLLKYFEKDRYVLDKQGYSCLIDGLFRARRFEDAQVWYRKMTEHNIKPDVILY 339

Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
           T++++   +AG    A    + M   G  PD  C  ++I  Y    LLD+A +L LE+ K
Sbjct: 340 TIMMKGLSKAGKFKDALRLLNEMTERGLVPDTHCYNALIKGYCDLGLLDEAKSLHLEISK 399

Query: 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG-IEK 519
           +       TYT+L+  + R  L+ +A+Q+  ++ + G  P      +L D + +AG IEK
Sbjct: 400 NDCFSSACTYTILICGMCRSGLVGDAQQIFNEMEKHGCYPSVVTFNALIDGFCKAGNIEK 459

Query: 520 KAL 522
             L
Sbjct: 460 AQL 462



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 71/134 (52%), Gaps = 10/134 (7%)

Query: 235 QNTQLYFKV---AELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPD 291
           +N  L+ ++   A  VL   S QT V    +L D+      +  A  IL ++ ++G  P+
Sbjct: 471 RNPSLFLRLSQGANRVLDTASLQTMVE---QLCDS----GLILKAYNILMQLTDSGFAPN 523

Query: 292 IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVD 351
           I+T  +L+H + KAGN++ A + F+ L+  G  PD   Y ++I   ++A + +   +++D
Sbjct: 524 IITYNILIHGFCKAGNINGAFKLFKELQLKGLSPDSVTYGTLINGLLSANREEDAFTVLD 583

Query: 352 MMITSGIERSEEIY 365
            ++ +G     E+Y
Sbjct: 584 QILKNGCTPITEVY 597



 Score = 42.4 bits (98), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 76/175 (43%), Gaps = 5/175 (2%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L++  F  N+  Y+ LI    K   +  A ++ K++   G+ PD VT   L++    A  
Sbjct: 515 LTDSGFAPNIITYNILIHGFCKAGNINGAFKLFKELQLKGLSPDSVTYGTLINGLLSANR 574

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            + A    + +  +G  P  +VY S +       +  L  SL    + S   R  E+  +
Sbjct: 575 EEDAFTVLDQILKNGCTPITEVYKSFMTWSCRRNKITLAFSLWLKYLRSIPGRDSEVLKS 634

Query: 368 LLRSFAQCGDVRGA--GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
           +  +F + G+V  A  G +    ++ +FQ  L   T+ +    QAG  ++A   F
Sbjct: 635 VEENFEK-GEVEEAVRGLLEMDFKLNDFQ--LAPYTIWLIGLCQAGRLEEALKIF 686


>gi|357115764|ref|XP_003559656.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 867

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 137/309 (44%), Gaps = 1/309 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ +I     E  +  A  +  +M + G+VP++VT   +VH   KA  +D+A+   
Sbjct: 271 DVVSYTMVIHGLFMEGEISKACNLFNEMVQKGVVPNVVTYNSIVHALCKARAMDKAELVL 330

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +  +  QPD+  Y +MI  Y   G+ K    +   M   G+      + +L+ S  + 
Sbjct: 331 RQMFDNSIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSLCKH 390

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
              + A +I + +  +  +P + S ++L+  Y   G      + F  M   G   D  C 
Sbjct: 391 KRSKEAAEIFHSIATKGHKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCF 450

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +I A+ K+ ++D+AL +  E+   G  P   TY  ++  L R+  + +A + L ++  
Sbjct: 451 NILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMIS 510

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALG-FLEAKKEQMGPDDFERIINGLLAGGFLQ 554
           +G  P   +  SL   +   G   KA + +   ++    +     F  II+ L   G + 
Sbjct: 511 IGLKPNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQGIPRPNITFFSSIIHSLCNEGRVM 570

Query: 555 DAQRVHGLM 563
           +AQ V  L+
Sbjct: 571 NAQDVFNLV 579



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 132/317 (41%), Gaps = 4/317 (1%)

Query: 244 AELVLSE---ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
           AELVL +    S Q +   Y+ +I  ++     ++A ++ K+M   G++PDIVT   L+ 
Sbjct: 326 AELVLRQMFDNSIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTFNSLMD 385

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
              K      A E F S+ + G +PD   Y+ ++  Y   G+     +L   M  +GI  
Sbjct: 386 SLCKHKRSKEAAEIFHSIATKGHKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVA 445

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
               +  L+ + A+ G +  A  I   MR +   P + +   ++ A  + G    A    
Sbjct: 446 DSHCFNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKL 505

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGF-EPGPATYTVLVDWLGR 479
             MI +G KP+     S+I  +     L KA  L+ E+   G   P    ++ ++  L  
Sbjct: 506 SQMISIGLKPNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQGIPRPNITFFSSIIHSLCN 565

Query: 480 LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD 539
              +  A+ +   +  +G+ P      SL D Y   G   KA   L  + +   +     
Sbjct: 566 EGRVMNAQDVFNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAGTEPDVVT 625

Query: 540 FERIINGLLAGGFLQDA 556
           +  +ING    G + D 
Sbjct: 626 YSTLINGYFKSGRIDDG 642



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/246 (21%), Positives = 103/246 (41%), Gaps = 1/246 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIV-PDIVTSTVLVHMYSKAGNLDRAKEA 314
           N   Y  LI        L  A+ ++ +M + GI  P+I   + ++H     G +  A++ 
Sbjct: 516 NTVVYHSLIQGFCTHGDLIKAKELVSEMMDQGIPRPNITFFSSIIHSLCNEGRVMNAQDV 575

Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
           F  +   G +PD   +NS+I  Y   G+      ++D M+++G E     Y  L+  + +
Sbjct: 576 FNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAGTEPDVVTYSTLINGYFK 635

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
            G +     +   M  +  +PT  + +L+++   +AG    A+  F  MI  G       
Sbjct: 636 SGRIDDGLILFREMLCKRVKPTTVTYSLVLDGLFRAGRTSAAKKMFHEMIESGTAMSIST 695

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
              ++    + N  D+A+ L  +L     +   A    ++  L +++   EA  L   +S
Sbjct: 696 YTIILQGLCRNNCTDEAITLFHKLGAMNLKFEIAILNTMIHALYKVKRREEAHDLFASVS 755

Query: 495 ELGEAP 500
             G  P
Sbjct: 756 ASGLVP 761



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 53/245 (21%), Positives = 111/245 (45%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  +S +I +   E  + +A+ +   +   G  PDI T   L+  Y   G +D+A    
Sbjct: 552 NITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFGVL 611

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           +++ S G +PD   Y+++I  Y  +G+   G+ L   M+   ++ +   Y  +L    + 
Sbjct: 612 DAMVSAGTEPDVVTYSTLINGYFKSGRIDDGLILFREMLCKRVKPTTVTYSLVLDGLFRA 671

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G    A ++ + M       ++ + T++++   +    D+A + F  +  +  K +    
Sbjct: 672 GRTSAAKKMFHEMIESGTAMSISTYTIILQGLCRNNCTDEAITLFHKLGAMNLKFEIAIL 731

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            +MI A  K    ++A +L   +   G  P  +TY V++  L +   + EA+ +   + +
Sbjct: 732 NTMIHALYKVKRREEAHDLFASVSASGLVPNASTYGVMIINLLKEGSVEEADIMFSSMEK 791

Query: 496 LGEAP 500
            G AP
Sbjct: 792 TGCAP 796



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 79/365 (21%), Positives = 144/365 (39%), Gaps = 14/365 (3%)

Query: 224 DWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKM 283
           D  +L D L  Q+T ++ +     L+  +     RD     DA A    L +  RI ++ 
Sbjct: 101 DAHHLFDELLRQDTPVHGRALNGFLAALA---RARDSVACSDAPALAVALFN--RICREE 155

Query: 284 NENGIVPDIV-TSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI--MAYVNA 340
               +VP  V T  +L+    +A   D     F  L   G + D  V N+ +  + Y   
Sbjct: 156 AGPRVVPLTVHTYGILMDCCCRARRPDLGPAFFARLLRAGLRTDGIVTNTFLKCLCYAKR 215

Query: 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE---FQPTL 397
               L M L+  M   G       Y  +++S   CG  R    +  ++R+ +     P +
Sbjct: 216 TDEALSM-LLHRMSELGCVPDAFSYNTVIKSL--CGGSRSQEALDMLLRMTKGDGCSPDV 272

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
            S T+++      G+  +A + F+ M++ G  P+     S++ A  K   +DKA  +L +
Sbjct: 273 VSYTMVIHGLFMEGEISKACNLFNEMVQKGVVPNVVTYNSIVHALCKARAMDKAELVLRQ 332

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI 517
           +  +  +P   TYT ++     L    EA ++  +++  G  P      SL D   +   
Sbjct: 333 MFDNSIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSLCKHKR 392

Query: 518 EKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVA 577
            K+A +    +  K  +     +  +++G    G   D   +   M   G  A       
Sbjct: 393 SKEAAEIFHSIATKGHKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFNI 452

Query: 578 LISSQ 582
           LI++ 
Sbjct: 453 LINAH 457



 Score = 43.1 bits (100), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 42/208 (20%), Positives = 90/208 (43%), Gaps = 10/208 (4%)

Query: 211 LAEWKELL----QPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLID 265
           L  ++E+L    +P+ + +  +LD L R   T    K+   ++ E     ++  Y+ ++ 
Sbjct: 643 LILFREMLCKRVKPTTVTYSLVLDGLFRAGRTSAAKKMFHEMI-ESGTAMSISTYTIILQ 701

Query: 266 AHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQP 325
              + NC ++A  +  K+    +  +I     ++H   K    + A + F S+ + G  P
Sbjct: 702 GLCRNNCTDEAITLFHKLGAMNLKFEIAILNTMIHALYKVKRREEAHDLFASVSASGLVP 761

Query: 326 DKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQIT 385
           +   Y  MI+  +  G  +    +   M  +G   S  +   ++R   Q G++  AG   
Sbjct: 762 NASTYGVMIINLLKEGSVEEADIMFSSMEKTGCAPSSRLLNDIIRMLLQKGEIVKAGYYM 821

Query: 386 NIMRIEEFQPTLESCT--LLVEAYGQAG 411
           +  +++    +LE+ T  LL+  +   G
Sbjct: 822 S--KVDGTIISLEASTTSLLISLFASKG 847


>gi|255660856|gb|ACU25597.1| pentatricopeptide repeat-containing protein [Bouchea fluminensis]
          Length = 418

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 124/262 (47%), Gaps = 8/262 (3%)

Query: 211 LAEWKELLQPSRIDWINLLD---RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAH 267
           + +W   L+PS + +  L++   RL + +     K A   +     Q +V  YS LI+  
Sbjct: 162 ITKWS--LRPSVVSFNTLMNGYIRLGDLDEGFRLKSA---MHATGVQPDVYTYSVLINGL 216

Query: 268 AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK 327
            KE+ +++A  +L +M +NG+VP+ VT T L+  + K G +D A E ++ + S GF PD 
Sbjct: 217 CKESKMDEANEMLNEMLDNGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQGFLPDL 276

Query: 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNI 387
             YN++I      G       LV+ MI  G++  +  Y  L+    + GD+    ++   
Sbjct: 277 ITYNTLIYGLCRRGDLGQARDLVEEMIMKGLKPDKITYTTLIDGSCKEGDLEITFELRKR 336

Query: 388 MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447
           M  E  +    + T L+    + G    A      M+ +G KPD+     ++  + K   
Sbjct: 337 MIRENIRLDEVTYTALISGLCREGRAGDAEKMLREMLTVGLKPDNGTYTMIMNEFCKTGD 396

Query: 448 LDKALNLLLELEKDGFEPGPAT 469
           +  A  LL E++++G  PG  T
Sbjct: 397 VKTASKLLREMQRNGPVPGVVT 418



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 66/318 (20%), Positives = 134/318 (42%), Gaps = 43/318 (13%)

Query: 214 WKELLQ---PSRIDWINLLDRLREQNTQLYFKVAELV---LSEESFQTNVRDYSKLIDAH 267
           +KE+L+   P  + + N+L     +  ++  ++A++V   +++ S + +V  ++ L++ +
Sbjct: 124 YKEILECGYPPSLYFFNILMHRFCKEGEM--RLAQMVFDAITKWSLRPSVVSFNTLMNGY 181

Query: 268 AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK 327
            +   L++  R+   M+  G+ PD+ T +VL++   K   +D A E    +  +G  P+ 
Sbjct: 182 IRLGDLDEGFRLKSAMHATGVQPDVYTYSVLINGLCKESKMDEANEMLNEMLDNGLVPNG 241

Query: 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNI 387
             + ++I  +   G+  L M +   M++ G                              
Sbjct: 242 VTFTTLIDGHCKNGKVDLAMEIYKQMLSQG------------------------------ 271

Query: 388 MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447
                F P L +   L+    + GD  QAR   + MI  G KPD     ++I    K+  
Sbjct: 272 -----FLPDLITYNTLIYGLCRRGDLGQARDLVEEMIMKGLKPDKITYTTLIDGSCKEGD 326

Query: 448 LDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVS 507
           L+    L   + ++       TYT L+  L R     +AE++L ++  +G  P       
Sbjct: 327 LEITFELRKRMIRENIRLDEVTYTALISGLCREGRAGDAEKMLREMLTVGLKPDNGTYTM 386

Query: 508 LCDMYARAGIEKKALQAL 525
           + + + + G  K A + L
Sbjct: 387 IMNEFCKTGDVKTASKLL 404



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 50/258 (19%), Positives = 107/258 (41%), Gaps = 2/258 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGI-VPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318
           +S L+ A+ +   + DA +  +   ++ I VP      VL H+  K          ++ +
Sbjct: 69  FSGLMLAYLESGFVRDAIQCFRLTKKHKIWVPFDTCRKVLEHL-MKLRYFRLVWGFYKEI 127

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
              G+ P    +N ++  +   G+ +L   + D +    +  S   +  L+  + + GD+
Sbjct: 128 LECGYPPSLYFFNILMHRFCKEGEMRLAQMVFDAITKWSLRPSVVSFNTLMNGYIRLGDL 187

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
               ++ + M     QP + + ++L+    +    D+A    + M+  G  P+     ++
Sbjct: 188 DEGFRLKSAMHATGVQPDVYTYSVLINGLCKESKMDEANEMLNEMLDNGLVPNGVTFTTL 247

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           I  + K   +D A+ +  ++   GF P   TY  L+  L R   + +A  L+ ++   G 
Sbjct: 248 IDGHCKNGKVDLAMEIYKQMLSQGFLPDLITYNTLIYGLCRRGDLGQARDLVEEMIMKGL 307

Query: 499 APPFKIQVSLCDMYARAG 516
            P      +L D   + G
Sbjct: 308 KPDKITYTTLIDGSCKEG 325


>gi|357121540|ref|XP_003562477.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Brachypodium distachyon]
          Length = 556

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/338 (21%), Positives = 144/338 (42%), Gaps = 35/338 (10%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L       N   Y+ L+D++ ++   +    +LK+M   G+ P + T T+LV   S+AG+
Sbjct: 174 LPRHGVGLNACCYNSLLDSYTRQRNDDAVAGLLKEMENRGVEPTVGTYTILVDGLSRAGD 233

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           + + +  ++ ++      D   Y+++I AY   G  +    + D  +  G+E +E  Y A
Sbjct: 234 ISKVEAVYDEMKRKNVAGDVYFYSAVINAYCRGGNVRRASEVFDECVGHGVEPNERTYGA 293

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+  F + G +  A  +   M++                                   +G
Sbjct: 294 LINGFCKIGQIEAAEMLLADMQLRG---------------------------------VG 320

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
           H  +     +MI  Y +  +++KAL +   +EK G E    TY  L   L R+  + +A+
Sbjct: 321 H--NQIVFNTMIDGYCRHGMVEKALEIKAVMEKMGIELDIYTYNTLACGLCRVNRMEDAK 378

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
           +LL  ++E G AP +    +L  ++A+ G   +A +    +E K  +     +  +I+G 
Sbjct: 379 KLLHIMAEKGVAPNYVSYTTLISIHAKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGY 438

Query: 548 LAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFN 585
           +  G +++A+R    ME +G          L+     N
Sbjct: 439 IKNGSIREAERFKKEMEKKGLVPDIYTYAGLVHGHCVN 476



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/372 (21%), Positives = 163/372 (43%), Gaps = 12/372 (3%)

Query: 225 WINLLDRL-REQNTQLYFKVAELV--LSEESFQTNVRDYSKLIDAHAKENCLEDAERILK 281
           + +LLD   R++N      VA L+  +     +  V  Y+ L+D  ++   +   E +  
Sbjct: 186 YNSLLDSYTRQRNDD---AVAGLLKEMENRGVEPTVGTYTILVDGLSRAGDISKVEAVYD 242

Query: 282 KMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAG 341
           +M    +  D+   + +++ Y + GN+ RA E F+    HG +P+++ Y ++I  +   G
Sbjct: 243 EMKRKNVAGDVYFYSAVINAYCRGGNVRRASEVFDECVGHGVEPNERTYGALINGFCKIG 302

Query: 342 QPKLG-MSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
           Q +   M L DM +  G+  ++ ++  ++  + + G V  A +I  +M     +  + + 
Sbjct: 303 QIEAAEMLLADMQL-RGVGHNQIVFNTMIDGYCRHGMVEKALEIKAVMEKMGIELDIYTY 361

Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
             L     +    + A+     M   G  P+     ++I+ + K+  + +A  L  ++E 
Sbjct: 362 NTLACGLCRVNRMEDAKKLLHIMAEKGVAPNYVSYTTLISIHAKEGDMVEARRLFRDMEG 421

Query: 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKK 520
            G  P   TY V++D   +   I EAE+   ++ + G  P       L   +   G    
Sbjct: 422 KGSRPSVVTYNVMIDGYIKNGSIREAERFKKEMEKKGLVPDIYTYAGLVHGHCVNGKVDV 481

Query: 521 ALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVAL 578
           AL+   F E K     P+   +  +++GL   G  ++A +++  M A G    + L   L
Sbjct: 482 ALRL--FEEMKHRGTKPNVVAYTALVSGLAKEGRSEEAFQLYDDMLAAGLTPDDTLYSVL 539

Query: 579 ISSQTFNRQRQP 590
           + S   + ++ P
Sbjct: 540 VGSLHTDSRKDP 551



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 123/288 (42%), Gaps = 35/288 (12%)

Query: 293 VTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDM 352
           ++++V+V  + K+G++D A    + L  HG   +   YNS++ +Y               
Sbjct: 149 LSASVVVDGFCKSGSVDDAHGLLDELPRHGVGLNACCYNSLLDSYTR------------- 195

Query: 353 MITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGD 412
                 +R+++    LL+     G                 +PT+ + T+LV+   +AGD
Sbjct: 196 ------QRNDDAVAGLLKEMENRG----------------VEPTVGTYTILVDGLSRAGD 233

Query: 413 PDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTV 472
             +  + +D M R     D    +++I AY +   + +A  +  E    G EP   TY  
Sbjct: 234 ISKVEAVYDEMKRKNVAGDVYFYSAVINAYCRGGNVRRASEVFDECVGHGVEPNERTYGA 293

Query: 473 LVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKK 532
           L++   ++  I  AE LL  +   G      +  ++ D Y R G+ +KAL+    +E   
Sbjct: 294 LINGFCKIGQIEAAEMLLADMQLRGVGHNQIVFNTMIDGYCRHGMVEKALEIKAVMEKMG 353

Query: 533 EQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
            ++    +  +  GL     ++DA+++  +M  +G A +      LIS
Sbjct: 354 IELDIYTYNTLACGLCRVNRMEDAKKLLHIMAEKGVAPNYVSYTTLIS 401


>gi|15237467|ref|NP_199470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180372|sp|Q9LS25.1|PP420_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g46580, chloroplastic; Flags: Precursor
 gi|8885599|dbj|BAA97529.1| unnamed protein product [Arabidopsis thaliana]
 gi|332008017|gb|AED95400.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 711

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/363 (22%), Positives = 161/363 (44%), Gaps = 5/363 (1%)

Query: 220 PSRIDWINLLDRLRE-QNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAER 278
           P+R + + +L+ LRE Q T  +F     V S+  F      Y+  + +       +  E 
Sbjct: 151 PNRDNALLVLNSLREWQKTHTFFN---WVKSKSLFPMETIFYNVTMKSLRFGRQFQLIEE 207

Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338
           +  +M ++G+  D +T + ++    +    ++A E FE +   G  PD+  Y++++  Y 
Sbjct: 208 MALEMVKDGVELDNITYSTIITCAKRCNLYNKAIEWFERMYKTGLMPDEVTYSAILDVYS 267

Query: 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398
            +G+ +  +SL +  + +G +     +  L + F + GD  G   +   M+  + +P + 
Sbjct: 268 KSGKVEEVLSLYERAVATGWKPDAIAFSVLGKMFGEAGDYDGIRYVLQEMKSMDVKPNVV 327

Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
               L+EA G+AG P  ARS F+ M+  G  P+++   +++  YGK      AL L  E+
Sbjct: 328 VYNTLLEAMGRAGKPGLARSLFNEMLEAGLTPNEKTLTALVKIYGKARWARDALQLWEEM 387

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQ-VSLCDMYARAGI 517
           +   +      Y  L++    + L  EAE+L   + E  +  P      ++ ++Y   G 
Sbjct: 388 KAKKWPMDFILYNTLLNMCADIGLEEEAERLFNDMKESVQCRPDNFSYTAMLNIYGSGGK 447

Query: 518 EKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVA 577
            +KA++    +     Q+       ++  L     + D   V  L   +G    +RL   
Sbjct: 448 AEKAMELFEEMLKAGVQVNVMGCTCLVQCLGKAKRIDDVVYVFDLSIKRGVKPDDRLCGC 507

Query: 578 LIS 580
           L+S
Sbjct: 508 LLS 510



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 86/189 (45%), Gaps = 4/189 (2%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ L++A  +      A  +  +M E G+ P+  T T LV +Y KA     A + +
Sbjct: 325 NVVVYNTLLEAMGRAGKPGLARSLFNEMLEAGLTPNEKTLTALVKIYGKARWARDALQLW 384

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI-YLALLRSFAQ 374
           E +++  +  D  +YN+++    + G  +    L + M  S   R +   Y A+L  +  
Sbjct: 385 EEMKAKKWPMDFILYNTLLNMCADIGLEEEAERLFNDMKESVQCRPDNFSYTAMLNIYGS 444

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR- 433
            G    A ++   M     Q  +  CT LV+  G+A   D     FD  I+ G KPDDR 
Sbjct: 445 GGKAEKAMELFEEMLKAGVQVNVMGCTCLVQCLGKAKRIDDVVYVFDLSIKRGVKPDDRL 504

Query: 434 --CTASMIA 440
             C  S++A
Sbjct: 505 CGCLLSVMA 513


>gi|242066030|ref|XP_002454304.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
 gi|241934135|gb|EES07280.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
          Length = 638

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 102/411 (24%), Positives = 169/411 (41%), Gaps = 23/411 (5%)

Query: 171 KIHE-RGEMILPEEPKPITGKCKLITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWINL 228
           K+HE   EM       P T     +      L + +  + LL E KE  +QP+   +  L
Sbjct: 212 KVHELYNEMSTEGHCFPDTMTYSALISAFCKLGRRDSATQLLNEMKENGMQPTTKIYTML 271

Query: 229 LDRLREQNTQLYFKV----AELVLSEE----SFQTNVRDYSKLIDAHAKENCLEDAERIL 280
           +         L+FK+      L L EE      + +V  Y++LI    K   +++A    
Sbjct: 272 I--------TLFFKLDDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFF 323

Query: 281 KKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA-YVN 339
            +M   G  PD V    +++   KAG LD A + F+ + +    P    YN++I A + +
Sbjct: 324 YEMQREGCRPDTVVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFES 383

Query: 340 AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLES 399
             +     S  + M  SGI  S   Y  L+  F +   +  A  +   M  + F P   +
Sbjct: 384 KSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAA 443

Query: 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELE 459
              L++A G+A   D A   F  +         R  A MI   GK   LD A+N+  E+ 
Sbjct: 444 YCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMN 503

Query: 460 KDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEK 519
           K G  P    Y  L+  L R  +++EA   + ++ E G  P       + +  A+ G   
Sbjct: 504 KLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPH 563

Query: 520 KALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
           +A++ L     K+  + PD   +  ++  L   G  ++A ++   M   GF
Sbjct: 564 RAMEMLS--NMKQSTVRPDVVSYNTVLGALSHAGMFEEAAKLMEEMNTLGF 612



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 128/323 (39%), Gaps = 43/323 (13%)

Query: 298 LVHMYSKAGNLDRAKEAFESLRSHGFQ-PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           ++ M    G   +  E +  + + G   PD   Y+++I A+   G+      L++ M  +
Sbjct: 200 MIIMLMHEGQYGKVHELYNEMSTEGHCFPDTMTYSALISAFCKLGRRDSATQLLNEMKEN 259

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
           G++ + +IY  L+  F +  DV GA  +   MR +  +P + + T L+   G+AG  D+A
Sbjct: 260 GMQPTTKIYTMLITLFFKLDDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEA 319

Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE------------------- 457
              F  M R G +PD     +MI   GK   LD A+ L  E                   
Sbjct: 320 YHFFYEMQREGCRPDTVVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKA 379

Query: 458 -----------------LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
                            +++ G  P   TY++L+D   +   + +A  LL ++ E G  P
Sbjct: 380 LFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPP 439

Query: 501 PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD---FERIINGLLAGGFLQDAQ 557
                 SL D   +A   K+   A    +  KE  G      +  +I  L   G L DA 
Sbjct: 440 CPAAYCSLIDALGKA---KRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAI 496

Query: 558 RVHGLMEAQGFAASERLKVALIS 580
            +   M   G A       AL+S
Sbjct: 497 NMFDEMNKLGCAPDVYAYNALMS 519



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 120/269 (44%), Gaps = 15/269 (5%)

Query: 220 PSRIDWINLLDRLREQNTQL------YFKVAELVLSEESFQTNVRDYSKLIDAHAKENCL 273
           PS + +  ++  L E  ++       + ++ E  +S  SF      YS LID   K N +
Sbjct: 368 PSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFT-----YSILIDGFCKTNRM 422

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           E A  +L++M+E G  P       L+    KA   D A E F+ L+ +      +VY  M
Sbjct: 423 EKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVM 482

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           I     AG+    +++ D M   G       Y AL+   A+ G +  A  ++ + R++E 
Sbjct: 483 IKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEA--LSTMRRMQEH 540

Query: 394 Q--PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
              P + S  +++    + G P +A      M +   +PD     +++ A     + ++A
Sbjct: 541 GCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEA 600

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRL 480
             L+ E+   GFE    TY+ +++ +G++
Sbjct: 601 AKLMEEMNTLGFEYDLITYSSILEAIGKV 629


>gi|242093812|ref|XP_002437396.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
 gi|241915619|gb|EER88763.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
          Length = 786

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 138/316 (43%), Gaps = 4/316 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ ++    K++       +L +M+ +G  P+ VT   ++ +  K G  D      
Sbjct: 383 NVNTYNFILGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVL 442

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E ++S G +  +  YN++I AY   G       + + M ++G       Y ALL   ++ 
Sbjct: 443 EGMKSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFAPCLTTYNALLNVLSRQ 502

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           GD   A  I + MR + F+P  +S +LL++ Y + G+     +    +      P     
Sbjct: 503 GDWSTAQSIVSKMRTKGFKPNDQSYSLLLQCYAKGGNIAGIDAIEKEVYGGTVFPSWVIL 562

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            +++ A  K   L        E++  G+ P    +  ++    +  + ++  ++   I +
Sbjct: 563 RTLVIANFKCRRLGGIEKAFQEVKARGYNPDLVIFNSMLSMYAKNGMYSKVTEIFDSIKQ 622

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFL 553
            G +P      SL DMYA+     +A + L  L  K  Q+ PD   +  +ING    G +
Sbjct: 623 SGLSPDLITYNSLMDMYAKCSESWEAEKILNQL--KSSQVKPDVVSYNTVINGFCKQGLI 680

Query: 554 QDAQRVHGLMEAQGFA 569
           ++AQR+   M A G A
Sbjct: 681 KEAQRILSEMIADGMA 696



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 111/260 (42%)

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           V  Y+ L+    K     +A R+LK+M ++G  PD VT   L   Y++AG  + A +  +
Sbjct: 279 VVTYNALLQVFGKAGNYTEALRVLKEMEQDGCQPDAVTYNELAGTYARAGFYEEAAKCLD 338

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
           ++ S G  P+   YN+++ AY N G+    ++L D M  SG   +   Y  +L    +  
Sbjct: 339 TMTSKGLLPNAFTYNTVMTAYGNIGKVDEALALFDQMKKSGCVPNVNTYNFILGMLGKKS 398

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
                 ++   M      P   +   ++   G+ G  D      + M   G +       
Sbjct: 399 RFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMKSCGVELSRDTYN 458

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
           ++IAAYG+      A  +  E+   GF P   TY  L++ L R    + A+ ++ K+   
Sbjct: 459 TLIAAYGRCGSRTNAFKMYNEMTSAGFAPCLTTYNALLNVLSRQGDWSTAQSIVSKMRTK 518

Query: 497 GEAPPFKIQVSLCDMYARAG 516
           G  P  +    L   YA+ G
Sbjct: 519 GFKPNDQSYSLLLQCYAKGG 538



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 63/290 (21%), Positives = 119/290 (41%)

Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338
           +L +M   G+ PD  T++ ++    + G +D A   FE L++ G  P    YN+++  + 
Sbjct: 231 LLDEMRAAGVEPDDFTASTVIAACCRDGLVDEAVAFFEDLKARGHTPCVVTYNALLQVFG 290

Query: 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398
            AG     + ++  M   G +     Y  L  ++A+ G    A +  + M  +   P   
Sbjct: 291 KAGNYTEALRVLKEMEQDGCQPDAVTYNELAGTYARAGFYEEAAKCLDTMTSKGLLPNAF 350

Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
           +   ++ AYG  G  D+A + FD M + G  P+      ++   GKK+     L +L E+
Sbjct: 351 TYNTVMTAYGNIGKVDEALALFDQMKKSGCVPNVNTYNFILGMLGKKSRFTVMLEMLGEM 410

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
            + G  P   T+  ++   G+  + +   ++L  +   G         +L   Y R G  
Sbjct: 411 SRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMKSCGVELSRDTYNTLIAAYGRCGSR 470

Query: 519 KKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
             A +    + +         +  ++N L   G    AQ +   M  +GF
Sbjct: 471 TNAFKMYNEMTSAGFAPCLTTYNALLNVLSRQGDWSTAQSIVSKMRTKGF 520



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 111/263 (42%), Gaps = 14/263 (5%)

Query: 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320
           S +I A  ++  +++A    + +   G  P +VT   L+ ++ KAGN   A    + +  
Sbjct: 248 STVIAACCRDGLVDEAVAFFEDLKARGHTPCVVTYNALLQVFGKAGNYTEALRVLKEMEQ 307

Query: 321 HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRG 380
            G QPD   YN +   Y  AG  +     +D M + G+  +   Y  ++ ++   G V  
Sbjct: 308 DGCQPDAVTYNELAGTYARAGFYEEAAKCLDTMTSKGLLPNAFTYNTVMTAYGNIGKVDE 367

Query: 381 AGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI-------RLGHKPDDR 433
           A  + + M+     P + +   ++   G+       +S F  M+       R G  P+  
Sbjct: 368 ALALFDQMKKSGCVPNVNTYNFILGMLGK-------KSRFTVMLEMLGEMSRSGCTPNRV 420

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
              +M+A  GK+ + D    +L  ++  G E    TY  L+   GR      A ++  ++
Sbjct: 421 TWNTMLAVCGKRGMEDYVTRVLEGMKSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEM 480

Query: 494 SELGEAPPFKIQVSLCDMYARAG 516
           +  G AP      +L ++ +R G
Sbjct: 481 TSAGFAPCLTTYNALLNVLSRQG 503



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 73/327 (22%), Positives = 139/327 (42%), Gaps = 38/327 (11%)

Query: 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ--PKLGMS 348
           D+   T ++H  S+AG  +RA E F  LR  G  P    YN ++  Y   G+  P++ ++
Sbjct: 172 DVRAYTTVLHALSRAGRYERAVELFAELRRQGVAPTLVTYNVVLDVYGRMGRSWPRI-VA 230

Query: 349 LVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYG 408
           L+D M  +G+E  +     ++ +  + G V  A      ++     P + +   L++ +G
Sbjct: 231 LLDEMRAAGVEPDDFTASTVIAACCRDGLVDEAVAFFEDLKARGHTPCVVTYNALLQVFG 290

Query: 409 QAGD-----------------PDQ----------ARSNF--------DYMIRLGHKPDDR 433
           +AG+                 PD           AR+ F        D M   G  P+  
Sbjct: 291 KAGNYTEALRVLKEMEQDGCQPDAVTYNELAGTYARAGFYEEAAKCLDTMTSKGLLPNAF 350

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
              +++ AYG    +D+AL L  +++K G  P   TY  ++  LG+        ++LG++
Sbjct: 351 TYNTVMTAYGNIGKVDEALALFDQMKKSGCVPNVNTYNFILGMLGKKSRFTVMLEMLGEM 410

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFL 553
           S  G  P      ++  +  + G+E    + L  +++   ++  D +  +I      G  
Sbjct: 411 SRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMKSCGVELSRDTYNTLIAAYGRCGSR 470

Query: 554 QDAQRVHGLMEAQGFAASERLKVALIS 580
            +A +++  M + GFA       AL++
Sbjct: 471 TNAFKMYNEMTSAGFAPCLTTYNALLN 497



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 62/281 (22%), Positives = 124/281 (44%), Gaps = 6/281 (2%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSE---ESFQTNVRDYSKLIDAHAKENCLE 274
             P    +  LL+ L  Q     +  A+ ++S+   + F+ N + YS L+  +AK   + 
Sbjct: 485 FAPCLTTYNALLNVLSRQGD---WSTAQSIVSKMRTKGFKPNDQSYSLLLQCYAKGGNIA 541

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
             + I K++    + P  V    LV    K   L   ++AF+ +++ G+ PD  ++NSM+
Sbjct: 542 GIDAIEKEVYGGTVFPSWVILRTLVIANFKCRRLGGIEKAFQEVKARGYNPDLVIFNSML 601

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
             Y   G       + D +  SG+      Y +L+  +A+C +   A +I N ++  + +
Sbjct: 602 SMYAKNGMYSKVTEIFDSIKQSGLSPDLITYNSLMDMYAKCSESWEAEKILNQLKSSQVK 661

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P + S   ++  + + G   +A+     MI  G  P      +++  Y    +  +A  +
Sbjct: 662 PDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFSEAREV 721

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
           +  + +   +P   TY  +VD   + +   EA   L ++SE
Sbjct: 722 INYMIQHNLKPMELTYRRVVDSYCKAKRFEEARSFLSEVSE 762



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 74/374 (19%), Positives = 160/374 (42%), Gaps = 43/374 (11%)

Query: 220 PSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERI 279
           P+R+ W  +L    ++  + Y       +     + +   Y+ LI A+ +     +A ++
Sbjct: 417 PNRVTWNTMLAVCGKRGMEDYVTRVLEGMKSCGVELSRDTYNTLIAAYGRCGSRTNAFKM 476

Query: 280 LKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339
             +M   G  P + T   L+++ S+ G+   A+     +R+ GF+P+ + Y+ ++  Y  
Sbjct: 477 YNEMTSAGFAPCLTTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNDQSYSLLLQCYAK 536

Query: 340 AGQPKLGMSLVD-----------------MMITS-------GIERSEE------------ 363
            G    G+  ++                 ++I +       GIE++ +            
Sbjct: 537 GGNIA-GIDAIEKEVYGGTVFPSWVILRTLVIANFKCRRLGGIEKAFQEVKARGYNPDLV 595

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
           I+ ++L  +A+ G      +I + ++     P L +   L++ Y +  +  +A    + +
Sbjct: 596 IFNSMLSMYAKNGMYSKVTEIFDSIKQSGLSPDLITYNSLMDMYAKCSESWEAEKILNQL 655

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483
                KPD     ++I  + K+ L+ +A  +L E+  DG  P   TY  LV     L++ 
Sbjct: 656 KSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMF 715

Query: 484 NEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERI 543
           +EA +++  + +    P       + D Y +A   K+  +A  FL    E   P+  +++
Sbjct: 716 SEAREVINYMIQHNLKPMELTYRRVVDSYCKA---KRFEEARSFLSEVSET-DPNFDKKV 771

Query: 544 INGLLAGGFLQDAQ 557
           ++ L A  +++DAQ
Sbjct: 772 LHTLAA--YIEDAQ 783



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 91/193 (47%), Gaps = 2/193 (1%)

Query: 341 GQPKLGMSLVD-MMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLES 399
           GQ     +L+D M +  G       Y  +L + ++ G    A ++   +R +   PTL +
Sbjct: 151 GQHDAVCALLDEMPLPPGSRLDVRAYTTVLHALSRAGRYERAVELFAELRRQGVAPTLVT 210

Query: 400 CTLLVEAYGQAGDP-DQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
             ++++ YG+ G    +  +  D M   G +PDD   +++IAA  +  L+D+A+    +L
Sbjct: 211 YNVVLDVYGRMGRSWPRIVALLDEMRAAGVEPDDFTASTVIAACCRDGLVDEAVAFFEDL 270

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
           +  G  P   TY  L+   G+     EA ++L ++ + G  P       L   YARAG  
Sbjct: 271 KARGHTPCVVTYNALLQVFGKAGNYTEALRVLKEMEQDGCQPDAVTYNELAGTYARAGFY 330

Query: 519 KKALQALGFLEAK 531
           ++A + L  + +K
Sbjct: 331 EEAAKCLDTMTSK 343



 Score = 42.4 bits (98), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 41/204 (20%), Positives = 75/204 (36%), Gaps = 37/204 (18%)

Query: 402 LLVEAYGQAGDPDQARSNFDYM-IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
           ++V A G+ G  D   +  D M +  G + D R   +++ A  +    ++A+ L  EL +
Sbjct: 142 MVVRALGREGQHDAVCALLDEMPLPPGSRLDVRAYTTVLHALSRAGRYERAVELFAELRR 201

Query: 461 DGFEPGPATYTVLVDWLGRL------------------------------------QLIN 484
            G  P   TY V++D  GR+                                     L++
Sbjct: 202 QGVAPTLVTYNVVLDVYGRMGRSWPRIVALLDEMRAAGVEPDDFTASTVIAACCRDGLVD 261

Query: 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERII 544
           EA      +   G  P      +L  ++ +AG   +AL+ L  +E    Q     +  + 
Sbjct: 262 EAVAFFEDLKARGHTPCVVTYNALLQVFGKAGNYTEALRVLKEMEQDGCQPDAVTYNELA 321

Query: 545 NGLLAGGFLQDAQRVHGLMEAQGF 568
                 GF ++A +    M ++G 
Sbjct: 322 GTYARAGFYEEAAKCLDTMTSKGL 345


>gi|83744086|gb|ABC42329.1| PPR protein [Oryza sativa Indica Group]
          Length = 761

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 119/238 (50%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI A+AK+  +++A  +  KM + G+ PD VT   ++ +  K+G ++ A   FE + 
Sbjct: 344 YNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQMI 403

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P   VYNS+I       + +    L+  M+  GI  +   + +++ S  + G V 
Sbjct: 404 DEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVI 463

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            + ++ ++M     +P + + + L++ Y  AG  D+A      M+ +G KP+     ++I
Sbjct: 464 ESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLI 523

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
             Y K + +  AL L  E+E  G  P   TY +++  L + +    A++L  +I+E G
Sbjct: 524 NGYCKISRMGDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESG 581



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 115/252 (45%), Gaps = 4/252 (1%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           +  + ++  Y  L+  +A +  L     +L  M  NGI PD     +L+  Y+K G +D 
Sbjct: 300 DGLEPDIATYCTLLQGYATKGALVGMHALLDLMVRNGIHPDHYVYNILICAYAKQGKVDE 359

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A   F  +R  G  PD   Y ++I     +G+ +  M   + MI  G+     +Y +L+ 
Sbjct: 360 AMLVFSKMRQQGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIH 419

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTL--LVEAYGQAGDPDQARSNFDYMIRLGH 428
               C     A ++  I+ + +    L +     +++++ + G   ++   FD M+R+G 
Sbjct: 420 GLCTCNKWERAEEL--ILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGV 477

Query: 429 KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQ 488
           KPD    +++I  Y     +D+A+ LL  +   G +P   TY  L++   ++  + +A  
Sbjct: 478 KPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLINGYCKISRMGDALV 537

Query: 489 LLGKISELGEAP 500
           L  ++   G +P
Sbjct: 538 LFKEMESSGVSP 549



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 142/319 (44%), Gaps = 5/319 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  YS +I A  K   ++ A  +L  M +NG++P+  T T ++H Y  +G    A    
Sbjct: 230 DVVTYSSIIAALCKGQAMDKAMEVLTSMVKNGVMPNCRTYTSIMHGYCSSGQPKEAIGFL 289

Query: 316 ESLRSHGFQPDK-----KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           + +RS G +PD        Y +++  Y   G      +L+D+M+ +GI     +Y  L+ 
Sbjct: 290 KKVRSDGVEPDGLEPDIATYCTLLQGYATKGALVGMHALLDLMVRNGIHPDHYVYNILIC 349

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
           ++A+ G V  A  + + MR +   P   +   ++    ++G  + A   F+ MI  G  P
Sbjct: 350 AYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSP 409

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
            +    S+I      N  ++A  L+LE+   G       +  ++D   +   + E+E+L 
Sbjct: 410 GNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLF 469

Query: 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAG 550
             +  +G  P      +L D Y  AG   +A++ L  + +   +     +  +ING    
Sbjct: 470 DLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLINGYCKI 529

Query: 551 GFLQDAQRVHGLMEAQGFA 569
             + DA  +   ME+ G +
Sbjct: 530 SRMGDALVLFKEMESSGVS 548



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 139/322 (43%), Gaps = 13/322 (4%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ +I+   KE     A     +M +  I PD+VT + ++    K   +D+A E  
Sbjct: 195 DVVSYTTVINGFFKEGDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVL 254

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV-----DMMITSGIERSEEIYLALLR 370
            S+  +G  P+ + Y S++  Y ++GQPK  +  +     D +   G+E     Y  LL+
Sbjct: 255 TSMVKNGVMPNCRTYTSIMHGYCSSGQPKEAIGFLKKVRSDGVEPDGLEPDIATYCTLLQ 314

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
            +A  G + G   + ++M      P      +L+ AY + G  D+A   F  M + G  P
Sbjct: 315 GYATKGALVGMHALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNP 374

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           D     ++I    K   ++ A+    ++  +G  PG   Y  L+  L        AE+L+
Sbjct: 375 DAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELI 434

Query: 491 GKISELGEAPPFKIQVSLCDMYARAG--IEKKALQALGFLEAKKEQMGPD--DFERIING 546
            ++ + G         S+ D + + G  IE + L    F    +  + PD   +  +I+G
Sbjct: 435 LEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKL----FDLMVRIGVKPDIITYSTLIDG 490

Query: 547 LLAGGFLQDAQRVHGLMEAQGF 568
               G + +A ++   M + G 
Sbjct: 491 YCLAGKMDEAMKLLSGMVSVGL 512



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/283 (21%), Positives = 120/283 (42%), Gaps = 16/283 (5%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNEN---GIVPDIVTSTVLVHMYSK 304
           ++E S   +V   + L+     EN  ++A  +   M +    G  PD+V+ T +++ + K
Sbjct: 149 MTELSCMPDVFSCTILLKGLCDENRSQEALELPHMMADGRGGGSAPDVVSYTTVINGFFK 208

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
            G+  +A   +  +      PD   Y+S+I A          M ++  M+ +G+  +   
Sbjct: 209 EGDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNGVMPNCRT 268

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQP------TLESCTLLVEAYGQAGDPDQARS 418
           Y +++  +   G  + A      +R +  +P          CTLL + Y   G      +
Sbjct: 269 YTSIMHGYCSSGQPKEAIGFLKKVRSDGVEPDGLEPDIATYCTLL-QGYATKGALVGMHA 327

Query: 419 NFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLG 478
             D M+R G  PD      +I AY K+  +D+A+ +  ++ + G  P   TY  ++  L 
Sbjct: 328 LLDLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIGILC 387

Query: 479 RLQLINEAEQLLGKISELGEAPPFKIQVSL------CDMYARA 515
           +   + +A     ++ + G +P   +  SL      C+ + RA
Sbjct: 388 KSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERA 430



 Score = 47.4 bits (111), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 48/218 (22%), Positives = 91/218 (41%), Gaps = 6/218 (2%)

Query: 288 IVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGM 347
           + P + T  +L+    +A  LD    A  ++   GF+ +   +  ++       +    M
Sbjct: 83  VTPTVHTYAILIGCCCRADRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAM 142

Query: 348 SLVDMMITSGIERSEEIYLALLRSFAQCGDVRG--AGQITNIM---RIEEFQPTLESCTL 402
            +V   +T  +    +++   +     C + R   A ++ ++M   R     P + S T 
Sbjct: 143 DIVLRRMTE-LSCMPDVFSCTILLKGLCDENRSQEALELPHMMADGRGGGSAPDVVSYTT 201

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           ++  + + GD  +A S +  M+     PD    +S+IAA  K   +DKA+ +L  + K+G
Sbjct: 202 VINGFFKEGDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNG 261

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
             P   TYT ++          EA   L K+   G  P
Sbjct: 262 VMPNCRTYTSIMHGYCSSGQPKEAIGFLKKVRSDGVEP 299



 Score = 43.5 bits (101), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 98/229 (42%), Gaps = 22/229 (9%)

Query: 325 PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQI 384
           P    Y  +I     A +  LG + +  ++  G       +  LL+    C D R +  +
Sbjct: 85  PTVHTYAILIGCCCRADRLDLGFAALGNVVKKGFRVEAITFTPLLKGL--CADKRTSDAM 142

Query: 385 TNIMR-IEEFQ--PTLESCTLLVEAYGQAGDPDQARSN----FDYMIR----LGHKPDDR 433
             ++R + E    P + SCT+L++     G  D+ RS       +M+      G  PD  
Sbjct: 143 DIVLRRMTELSCMPDVFSCTILLK-----GLCDENRSQEALELPHMMADGRGGGSAPDVV 197

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
              ++I  + K+    KA +   E+      P   TY+ ++  L + Q +++A ++L  +
Sbjct: 198 SYTTVINGFFKEGDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTSM 257

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFL-EAKKEQMGPDDFE 541
            + G  P  +   S+   Y  +G  K   +A+GFL + + + + PD  E
Sbjct: 258 VKNGVMPNCRTYTSIMHGYCSSGQPK---EAIGFLKKVRSDGVEPDGLE 303


>gi|410109895|gb|AFV61027.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           urticoides]
          Length = 412

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 119/261 (45%), Gaps = 6/261 (2%)

Query: 218 LQPSRIDWINLLD---RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           L+PS + +  L++   RL + +     K A L       Q +V  YS LI+   KE+ ++
Sbjct: 154 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLA---SGVQPDVYTYSVLINGLCKESKMD 210

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
            A  +  +M   G+VP+ VT T L+  + K G +D A E ++ + S    PD   YN++I
Sbjct: 211 GANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLI 270

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
                 G  K    L+D M   G++  +  Y  L+    + GD+  A +    M  E  +
Sbjct: 271 YGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIR 330

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
               + T L+    Q G    A      M+ +G KPD      ++  + KK  + K   L
Sbjct: 331 LDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFCKKGDVWKGSKL 390

Query: 455 LLELEKDGFEPGPATYTVLVD 475
           L E+++DG  P   TY VL++
Sbjct: 391 LKEMQRDGHAPSVVTYNVLMN 411



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 65/313 (20%), Positives = 146/313 (46%), Gaps = 5/313 (1%)

Query: 191 CKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELV--- 247
           C+ + + ++ L+  +       E  E   P+ + + N+L     ++  +  +VA+ V   
Sbjct: 91  CRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDI--RVAQSVFDA 148

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +++   + +V  Y+ L++ + +   L++  R+   M  +G+ PD+ T +VL++   K   
Sbjct: 149 ITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESK 208

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D A   F+ +   G  P+   + ++I  +   G+  L M +   M++  +      Y  
Sbjct: 209 MDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNT 268

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    + GD++ A  + + M ++  +P   + T L++   + GD D A  +   MI+  
Sbjct: 269 LIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQEN 328

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            + DD    ++I+   ++     A  +L E+   G +P   TYT++V+   +   + +  
Sbjct: 329 IRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFCKKGDVWKGS 388

Query: 488 QLLGKISELGEAP 500
           +LL ++   G AP
Sbjct: 389 KLLKEMQRDGHAP 401



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 56/267 (20%), Positives = 110/267 (41%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E  +  ++  ++ L+    K+  +  A+ +   + + G+ P +V+   L++ Y + G+LD
Sbjct: 116 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 175

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
                  ++ + G QPD   Y+ +I       +      L D M+  G+  +   +  L+
Sbjct: 176 EGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLI 235

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               + G V  A +I   M  +   P L +   L+    + GD  QA    D M   G K
Sbjct: 236 DGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLK 295

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     ++I    K+  LD A      + ++        YT L+  L +     +AE++
Sbjct: 296 PDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKM 355

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAG 516
           L ++  +G  P       + + + + G
Sbjct: 356 LREMLSVGLKPDTGTYTMIVNEFCKKG 382


>gi|413934892|gb|AFW69443.1| hypothetical protein ZEAMMB73_914225 [Zea mays]
          Length = 561

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 108/250 (43%), Gaps = 14/250 (5%)

Query: 227 NLLDRLREQNTQLYFKVAELVL--SEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMN 284
           ++L RL   N  ++ K  +LV+   E   + +V+ YS LID   K   L DA R+  KM 
Sbjct: 197 SMLVRLYRDNG-MWKKATDLVMEMQEVGVELDVKIYSGLIDTFGKYGQLADARRMFDKMR 255

Query: 285 ENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPK 344
             G+ PDI T   L+  + + GN+ RA   F S++  G  PD K++  +I      G+  
Sbjct: 256 AEGVRPDISTWNALIQWHCRVGNMKRALRFFTSMQEEGMYPDPKIFVMIISRLGEQGKWD 315

Query: 345 LGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
               L D M   G + S  +Y  L+  + Q G  R A      +R E  Q       ++ 
Sbjct: 316 EIKKLFDGMNNRGFKESGAVYAILVDIYGQYGHFRDAQDCIAALRAENTQLLPRVFCVIA 375

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
            AY Q             M   G +P+     S+I A+G      +AL +   ++  G  
Sbjct: 376 NAYAQ-----------QLMEEEGFEPNLVMLNSLINAFGTAGRHLEALAVFQHIKDSGMS 424

Query: 465 PGPATYTVLV 474
           P   TYT L+
Sbjct: 425 PDVVTYTTLM 434



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 122/281 (43%), Gaps = 26/281 (9%)

Query: 282 KMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAG 341
           +M ++G+  +  T T+L+  Y++AG L+ +      +R  G + D   Y+ ++  Y + G
Sbjct: 148 QMADDGVARNRRTYTLLLGAYARAGRLEDSWWVLGEMRRWGIRLDTAGYSMLVRLYRDNG 207

Query: 342 QPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCT 401
             K    LV  M   G+E   +IY  L+ +F + G +  A ++ + MR E  +P + +  
Sbjct: 208 MWKKATDLVMEMQEVGVELDVKIYSGLIDTFGKYGQLADARRMFDKMRAEGVRPDISTWN 267

Query: 402 LLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD 461
            L++ + + G+  +A   F  M   G  PD +    +I+  G++   D+   L   +   
Sbjct: 268 ALIQWHCRVGNMKRALRFFTSMQEEGMYPDPKIFVMIISRLGEQGKWDEIKKLFDGMNNR 327

Query: 462 GFEPGPATYTVLVDWLGRLQLINEAE-----------QLLGKI-------------SELG 497
           GF+   A Y +LVD  G+     +A+           QLL ++              E G
Sbjct: 328 GFKESGAVYAILVDIYGQYGHFRDAQDCIAALRAENTQLLPRVFCVIANAYAQQLMEEEG 387

Query: 498 EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
             P   +  SL + +  AG   +AL    F   K   M PD
Sbjct: 388 FEPNLVMLNSLINAFGTAGRHLEALAV--FQHIKDSGMSPD 426



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 130/322 (40%), Gaps = 40/322 (12%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y + I +HA  + L  +  +L  M  +G  P       L+   S+AG    A+     +R
Sbjct: 57  YDRAIQSHAGSD-LARSLGLLADMQASGGRPSGSAYARLIRALSRAGRALEAEALLLEMR 115

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +P+   YN+++   + A   +L   L+  M   G+ R+   Y              
Sbjct: 116 RLGPRPEAAHYNALLEGLLAAAHLRLADLLLLQMADDGVARNRRTY-------------- 161

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
                                TLL+ AY +AG  + +      M R G + D    + ++
Sbjct: 162 ---------------------TLLLGAYARAGRLEDSWWVLGEMRRWGIRLDTAGYSMLV 200

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             Y    +  KA +L++E+++ G E     Y+ L+D  G+   + +A ++  K+   G  
Sbjct: 201 RLYRDNGMWKKATDLVMEMQEVGVELDVKIYSGLIDTFGKYGQLADARRMFDKMRAEGVR 260

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQDAQ 557
           P      +L   + R G  K+AL+   F   ++E M PD   F  II+ L   G   + +
Sbjct: 261 PDISTWNALIQWHCRVGNMKRALRF--FTSMQEEGMYPDPKIFVMIISRLGEQGKWDEIK 318

Query: 558 RVHGLMEAQGFAASERLKVALI 579
           ++   M  +GF  S  +   L+
Sbjct: 319 KLFDGMNNRGFKESGAVYAILV 340



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 8/92 (8%)

Query: 232 LREQNTQLYFKV--------AELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKM 283
           LR +NTQL  +V        A+ ++ EE F+ N+   + LI+A        +A  + + +
Sbjct: 359 LRAENTQLLPRVFCVIANAYAQQLMEEEGFEPNLVMLNSLINAFGTAGRHLEALAVFQHI 418

Query: 284 NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
            ++G+ PD+VT T L+  + +A   ++    F
Sbjct: 419 KDSGMSPDVVTYTTLMKTFMRAKKFEKVSIEF 450


>gi|224083888|ref|XP_002307160.1| predicted protein [Populus trichocarpa]
 gi|222856609|gb|EEE94156.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 97/389 (24%), Positives = 163/389 (41%), Gaps = 19/389 (4%)

Query: 192 KLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEE 251
           K++T  I S  KEE+ +    E  E + P             + +T LY  V   ++   
Sbjct: 241 KIVTKLISSFSKEEELTCFFEEMHEDMDP-------------KASTLLYNSVLNSLVDNG 287

Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVP-DIVTSTVLVHMYSKAGNLDR 310
           S    V     L+ A    NC+ D E I K      +VP +  T +++++   K G+LD 
Sbjct: 288 S----VHKAYHLLQAITIGNCIGDGE-IGKLFRGKAMVPPNSTTFSIVINGLIKTGDLDL 342

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A   F  +   G +PD  +YN++I     + + +    L+  M  SGIE +      +  
Sbjct: 343 AVGLFRDMARIGCKPDLLLYNNLIDGLCTSNRLQESCGLLQEMEESGIEPTSFTNNCIFG 402

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
              +  D+ GA  +   MRI    P ++  T LV+   + G   +A      M   G +P
Sbjct: 403 CLCRRHDISGALHLLKKMRIHGHVPWIKHSTSLVKELCKHGKEVEACKFLVDMAEEGFQP 462

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           D    ++ +    K   +D+AL L  ++   G+ P    Y +L+  L + Q I EA+ LL
Sbjct: 463 DIVAYSACLDGLIKIQEVDQALKLFQDICAQGYCPDVIAYNILIKGLCKTQRIAEAQNLL 522

Query: 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAG 550
            ++ E G  P      +L D   +    ++A+  L  +  K+ +     +  +INGL   
Sbjct: 523 HEMEEKGLVPSAVTYNTLIDGLCKTDHLEEAMLFLSMMIEKEREPNVITYSTLINGLCNA 582

Query: 551 GFLQDAQRVHGLMEAQGFAASERLKVALI 579
           G   DA  +   M  +G   S    +A I
Sbjct: 583 GRPDDALVLWNEMGRKGCTPSSIAYMAFI 611



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 147/346 (42%), Gaps = 20/346 (5%)

Query: 242 KVAELV--LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLV 299
           K  EL+  + E++ + N + +  LI    KE+ ++ A  +  KM ++G  PDI    V++
Sbjct: 153 KACELIETMEEKNVRLNKKTFCSLIYGFVKESRVDKALHLFDKMKKSGFTPDISLYDVII 212

Query: 300 HMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ-------------PKLG 346
                  ++ +A   +  ++    QPD K+   +I ++    +             PK  
Sbjct: 213 GGLCVNKDVKKALCLYSEMKGFKIQPDVKIVTKLISSFSKEEELTCFFEEMHEDMDPKAS 272

Query: 347 MSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF-QPTLESCTLLVE 405
             L + ++ S ++         L      G+  G G+I  + R +    P   + ++++ 
Sbjct: 273 TLLYNSVLNSLVDNGSVHKAYHLLQAITIGNCIGDGEIGKLFRGKAMVPPNSTTFSIVIN 332

Query: 406 AYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
              + GD D A   F  M R+G KPD     ++I      N L ++  LL E+E+ G EP
Sbjct: 333 GLIKTGDLDLAVGLFRDMARIGCKPDLLLYNNLIDGLCTSNRLQESCGLLQEMEESGIEP 392

Query: 466 GPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
              T   +   L R   I+ A  LL K+   G  P  K   SL     + G E +A + L
Sbjct: 393 TSFTNNCIFGCLCRRHDISGALHLLKKMRIHGHVPWIKHSTSLVKELCKHGKEVEACKFL 452

Query: 526 GFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
             ++  +E   PD   +   ++GL+    +  A ++   + AQG+ 
Sbjct: 453 --VDMAEEGFQPDIVAYSACLDGLIKIQEVDQALKLFQDICAQGYC 496



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 88/209 (42%), Gaps = 3/209 (1%)

Query: 267 HAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPD 326
           H KE    +A + L  M E G  PDIV  +  +    K   +D+A + F+ + + G+ PD
Sbjct: 442 HGKE---VEACKFLVDMAEEGFQPDIVAYSACLDGLIKIQEVDQALKLFQDICAQGYCPD 498

Query: 327 KKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITN 386
              YN +I       +     +L+  M   G+  S   Y  L+    +   +  A    +
Sbjct: 499 VIAYNILIKGLCKTQRIAEAQNLLHEMEEKGLVPSAVTYNTLIDGLCKTDHLEEAMLFLS 558

Query: 387 IMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKN 446
           +M  +E +P + + + L+     AG PD A   ++ M R G  P      + I       
Sbjct: 559 MMIEKEREPNVITYSTLINGLCNAGRPDDALVLWNEMGRKGCTPSSIAYMAFIHGLSNCG 618

Query: 447 LLDKALNLLLELEKDGFEPGPATYTVLVD 475
             ++AL  L E+E+   +P    Y  L++
Sbjct: 619 RPNEALVYLREMEEREMKPDTYVYVGLLN 647



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/241 (19%), Positives = 110/241 (45%), Gaps = 7/241 (2%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N   Y+ L++  +K  C++  E  LK+M+++G   D  T T ++ +Y      D+A + F
Sbjct: 65  NSYSYTCLLEVLSKSICIDLLEMRLKEMHDHGWGFDKYTLTPVLQVYCNMAEFDKALDVF 124

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G+  D+ V++ +++A+   G+      L++ M    +  +++ + +L+  F + 
Sbjct: 125 NEIHDRGWV-DEYVFSILVLAFSKWGKVDKACELIETMEEKNVRLNKKTFCSLIYGFVKE 183

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
             V  A  + + M+   F P +    +++       D  +A   +  M     +PD +  
Sbjct: 184 SRVDKALHLFDKMKKSGFTPDISLYDVIIGGLCVNKDVKKALCLYSEMKGFKIQPDVKIV 243

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPAT--YTVLVDWLGRLQLINEAEQLLGKI 493
             +I+++ K    ++ L    E   +  +P  +T  Y  +++ L     +++A  LL  I
Sbjct: 244 TKLISSFSK----EEELTCFFEEMHEDMDPKASTLLYNSVLNSLVDNGSVHKAYHLLQAI 299

Query: 494 S 494
           +
Sbjct: 300 T 300



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 73/162 (45%), Gaps = 2/162 (1%)

Query: 216 ELLQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           E  QP  + +   LD L + Q      K+ + + ++  +  +V  Y+ LI    K   + 
Sbjct: 458 EGFQPDIVAYSACLDGLIKIQEVDQALKLFQDICAQ-GYCPDVIAYNILIKGLCKTQRIA 516

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           +A+ +L +M E G+VP  VT   L+    K  +L+ A      +     +P+   Y+++I
Sbjct: 517 EAQNLLHEMEEKGLVPSAVTYNTLIDGLCKTDHLEEAMLFLSMMIEKEREPNVITYSTLI 576

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
               NAG+P   + L + M   G   S   Y+A +   + CG
Sbjct: 577 NGLCNAGRPDDALVLWNEMGRKGCTPSSIAYMAFIHGLSNCG 618



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/264 (20%), Positives = 97/264 (36%), Gaps = 9/264 (3%)

Query: 183 EPKPITGKCKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWI----NLLDRLREQNTQ 238
           EP   T  C         L +  D S  L   K++     + WI    +L+  L +   +
Sbjct: 391 EPTSFTNNCIFGC-----LCRRHDISGALHLLKKMRIHGHVPWIKHSTSLVKELCKHGKE 445

Query: 239 LYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVL 298
           +      + ++EE FQ ++  YS  +D   K   ++ A ++ + +   G  PD++   +L
Sbjct: 446 VEACKFLVDMAEEGFQPDIVAYSACLDGLIKIQEVDQALKLFQDICAQGYCPDVIAYNIL 505

Query: 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
           +    K   +  A+     +   G  P    YN++I         +  M  + MMI    
Sbjct: 506 IKGLCKTQRIAEAQNLLHEMEEKGLVPSAVTYNTLIDGLCKTDHLEEAMLFLSMMIEKER 565

Query: 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418
           E +   Y  L+      G    A  + N M  +   P+  +    +      G P++A  
Sbjct: 566 EPNVITYSTLINGLCNAGRPDDALVLWNEMGRKGCTPSSIAYMAFIHGLSNCGRPNEALV 625

Query: 419 NFDYMIRLGHKPDDRCTASMIAAY 442
               M     KPD      ++ A+
Sbjct: 626 YLREMEEREMKPDTYVYVGLLNAF 649



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 64/296 (21%), Positives = 114/296 (38%), Gaps = 6/296 (2%)

Query: 217 LLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           LL  + ID +   +RL+E +  L  ++ E  +   SF  N      +     + + +  A
Sbjct: 360 LLYNNLIDGLCTSNRLQE-SCGLLQEMEESGIEPTSFTNNC-----IFGCLCRRHDISGA 413

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
             +LKKM  +G VP I  ST LV    K G    A +    +   GFQPD   Y++ +  
Sbjct: 414 LHLLKKMRIHGHVPWIKHSTSLVKELCKHGKEVEACKFLVDMAEEGFQPDIVAYSACLDG 473

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
            +   +    + L   +   G       Y  L++   +   +  A  + + M  +   P+
Sbjct: 474 LIKIQEVDQALKLFQDICAQGYCPDVIAYNILIKGLCKTQRIAEAQNLLHEMEEKGLVPS 533

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
             +   L++   +    ++A      MI    +P+    +++I         D AL L  
Sbjct: 534 AVTYNTLIDGLCKTDHLEEAMLFLSMMIEKEREPNVITYSTLINGLCNAGRPDDALVLWN 593

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
           E+ + G  P    Y   +  L      NEA   L ++ E    P   + V L + +
Sbjct: 594 EMGRKGCTPSSIAYMAFIHGLSNCGRPNEALVYLREMEEREMKPDTYVYVGLLNAF 649



 Score = 45.8 bits (107), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 53/275 (19%), Positives = 112/275 (40%), Gaps = 46/275 (16%)

Query: 289 VPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMS 348
           VP+  + T L+ + SK+  +D  +   + +  HG+  DK     ++  Y N  +      
Sbjct: 63  VPNSYSYTCLLEVLSKSICIDLLEMRLKEMHDHGWGFDKYTLTPVLQVYCNMAE------ 116

Query: 349 LVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYG 408
                     +++ +++                 +I +   ++E+  ++     LV A+ 
Sbjct: 117 ---------FDKALDVF----------------NEIHDRGWVDEYVFSI-----LVLAFS 146

Query: 409 QAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPA 468
           + G  D+A    + M     + + +   S+I  + K++ +DKAL+L  +++K GF P  +
Sbjct: 147 KWGKVDKACELIETMEEKNVRLNKKTFCSLIYGFVKESRVDKALHLFDKMKKSGFTPDIS 206

Query: 469 TYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFL 528
            Y V++  L   + + +A  L  ++      P  KI   L   ++      K  +   F 
Sbjct: 207 LYDVIIGGLCVNKDVKKALCLYSEMKGFKIQPDVKIVTKLISSFS------KEEELTCFF 260

Query: 529 EAKKEQMGPDD----FERIINGLLAGGFLQDAQRV 559
           E   E M P      +  ++N L+  G +  A  +
Sbjct: 261 EEMHEDMDPKASTLLYNSVLNSLVDNGSVHKAYHL 295


>gi|115445449|ref|NP_001046504.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|50251963|dbj|BAD27898.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536035|dbj|BAF08418.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|125581581|gb|EAZ22512.1| hypothetical protein OsJ_06176 [Oryza sativa Japonica Group]
 gi|215704610|dbj|BAG94238.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215737116|dbj|BAG96045.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 632

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 104/412 (25%), Positives = 167/412 (40%), Gaps = 23/412 (5%)

Query: 170 EKIHE-RGEMILPEEPKPITGKCKLITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWIN 227
           EK+HE   EM       P T     +      L +++    LL E KE  +QP+      
Sbjct: 211 EKVHELYNEMSNEGHCHPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTA----- 265

Query: 228 LLDRLREQNTQLYFKV----AELVLSEE----SFQTNVRDYSKLIDAHAKENCLEDAERI 279
              ++      L+FK+      L L EE      + +V  Y++LI    K   +++A   
Sbjct: 266 ---KIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGKAGRIDEAYHF 322

Query: 280 LKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA-YV 338
             +M      PD V    +++   KAG LD   + FE +      P+   YN++I A + 
Sbjct: 323 YHEMQREDCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFE 382

Query: 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398
           +  +     S  + M  SGI  S   Y  L+  F +   +  A  +   M  + F P   
Sbjct: 383 SKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPA 442

Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
           +   L++A G+A   D A   F  +         R  A MI   GK   LD A+NL  E+
Sbjct: 443 AYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEM 502

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
            K G  P    Y  L+  L R  +++EA   + K+ E G  P       + +  A+ G  
Sbjct: 503 SKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGP 562

Query: 519 KKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
            +A++ L     K   + PD   +  +++ L   G  ++A  +   M A GF
Sbjct: 563 HRAMEMLT--NMKNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEMNALGF 612



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 97/221 (43%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS LID   K N +E A  +L++M+E G  P       L+    KA   D A E F+ L+
Sbjct: 409 YSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELK 468

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
            +      +VY  MI     AG+    ++L D M   G   +   Y AL+   A+   + 
Sbjct: 469 ENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLD 528

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A      M+     P + S  +++    + G P +A      M     KPD     +++
Sbjct: 529 EALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTVL 588

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
           +A     + ++A  L+ E+   GFE    TY+ +++ +G++
Sbjct: 589 SALSHAGMFEEAAELMKEMNALGFEYDLITYSSILEAIGKV 629



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 95/411 (23%), Positives = 153/411 (37%), Gaps = 91/411 (22%)

Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAER---ILKKMNENGIVPDIVTSTV----LVHMYSK 304
           ++Q +   Y  LI      +CLE  E+   + K + E    P  V + +    ++ M   
Sbjct: 118 NYQHDTSTYMALI------HCLELVEQYGEMWKMIQEMVRSPICVVTPMELSQVIRMLGN 171

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ---------------------- 342
           A  + +A   F  +++   QP  + YNSMI+  ++ GQ                      
Sbjct: 172 AKMIGKAITIFYQIKARKCQPTAQAYNSMIIMLIHEGQYEKVHELYNEMSNEGHCHPDTV 231

Query: 343 ---------PKLG-----MSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIM 388
                     KLG     + L++ M  +G++ + +IY  ++  F +  +V GA  +   M
Sbjct: 232 TYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEM 291

Query: 389 RIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLL 448
           R    +P + + T L+   G+AG  D+A   +  M R   KPD     +MI   GK   L
Sbjct: 292 RYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREDCKPDTVVMNNMINFLGKAGRL 351

Query: 449 DKALNLLLE------------------------------------LEKDGFEPGPATYTV 472
           D  L L  E                                    ++  G  P P TY++
Sbjct: 352 DDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSI 411

Query: 473 LVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKK 532
           L+D   +   I +A  LL ++ E G  P      SL D   +A   K+   A    +  K
Sbjct: 412 LIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKA---KRYDLACELFQELK 468

Query: 533 EQMGPDD---FERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
           E  G      +  +I  L   G L DA  +   M   G   +     AL+S
Sbjct: 469 ENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMS 519



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 95/230 (41%), Gaps = 7/230 (3%)

Query: 184 PKPITGKCKLITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFK 242
           P P T    ++ D      + E    LL E  E    P    + +L+D L +   + Y  
Sbjct: 404 PSPFTYS--ILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGK--AKRYDL 459

Query: 243 VAELV--LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
             EL   L E    ++ R Y+ +I    K   L+DA  +  +M++ G  P++     L+ 
Sbjct: 460 ACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMS 519

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
             ++A  LD A      ++ HG  PD   YN ++      G P   M ++  M  S I+ 
Sbjct: 520 GLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKP 579

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410
               Y  +L + +  G    A ++   M    F+  L + + ++EA G+ 
Sbjct: 580 DAVSYNTVLSALSHAGMFEEAAELMKEMNALGFEYDLITYSSILEAIGKV 629


>gi|449479180|ref|XP_004155527.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
           mitochondrial-like [Cucumis sativus]
          Length = 653

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 128/301 (42%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E     ++  Y+ L++       +E AE++ + M+   IVPD VT  +++  Y KAG 
Sbjct: 211 MKENGIDPSLYTYNFLVNGLVNSMFIESAEKVFEVMDGGKIVPDTVTYNIMIKGYCKAGK 270

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L +A E F  +     +PDK  Y ++I A  +       +SL   M   G+E     Y  
Sbjct: 271 LQKAMEKFRDMEMKNVKPDKITYMTLIQACYSERDFDTCLSLYLEMEERGLEIPPHSYSL 330

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++    +      A  +   M  +  +  +   T L+++Y + G  ++A   F+ M   G
Sbjct: 331 VIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEG 390

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            +PD    + ++    K   LD  + L       G       Y  L+D LG+   I +AE
Sbjct: 391 FEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAE 450

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
            L  ++SE G A       ++ D  A+ G   +AL   G +E +        F  +I+GL
Sbjct: 451 NLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDGL 510

Query: 548 L 548
            
Sbjct: 511 F 511



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 103/437 (23%), Positives = 181/437 (41%), Gaps = 68/437 (15%)

Query: 160 LSDPKWTEVAEKIHE--RGEMILPEEPKP---ITGKCKLITDKIL-SLEKEEDPSPLLAE 213
           L +  + E AEK+ E   G  I+P+       I G CK    K+  ++EK  D      E
Sbjct: 230 LVNSMFIESAEKVFEVMDGGKIVPDTVTYNIMIKGYCK--AGKLQKAMEKFRD-----ME 282

Query: 214 WKELLQPSRIDWINLLDRL---REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKE 270
            K + +P +I ++ L+      R+ +T L      L + E   +     YS +I    K+
Sbjct: 283 MKNV-KPDKITYMTLIQACYSERDFDTCLSLY---LEMEERGLEIPPHSYSLVIGGLCKQ 338

Query: 271 NCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVY 330
               +A  + + MN+ G   ++   T L+  YSK G+++ A   FE +++ GF+PD   Y
Sbjct: 339 RKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTY 398

Query: 331 NSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRI 390
           + ++     +G+   GM L D     G+  +   Y +                       
Sbjct: 399 SVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYAS----------------------- 435

Query: 391 EEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDK 450
                       L++  G+AG  + A + F+ M   G   D  C  ++I A  K   +D+
Sbjct: 436 ------------LIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQ 483

Query: 451 ALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP------FKI 504
           AL L   +E++G +    T+T+L+D L +     EA +   K+ + G  P         I
Sbjct: 484 ALALFGRMEEEGCDQTVYTFTILIDGLFKEHKNEEAIKFWDKMIDKGITPTVASFRALAI 543

Query: 505 QVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLME 564
            + LC   ARA      L  +G +           FE +IN L     +++A ++   + 
Sbjct: 544 GLCLCGKVARACKILDDLAPMGIIPETA-------FEDMINTLCKAQRIKEACKLADGIV 596

Query: 565 AQGFAASERLKVALISS 581
            +G     R++  LI++
Sbjct: 597 DRGREIPGRIRTVLINA 613



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 131/273 (47%), Gaps = 7/273 (2%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
            ++++  + NV  Y+ LID+++K   +E+A R+ ++M   G  PD VT +VLV+   K+G
Sbjct: 350 TMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSG 409

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            LD   E F+  R+ G   +   Y S+I     AG+ +   +L + M   G  R    Y 
Sbjct: 410 RLDDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYN 469

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           A++ + A+ G +  A  +   M  E    T+ + T+L++   +    ++A   +D MI  
Sbjct: 470 AIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHKNEEAIKFWDKMIDK 529

Query: 427 GHKP---DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483
           G  P     R  A  +   GK   + +A  +L +L   G  P  A +  +++ L + Q I
Sbjct: 530 GITPTVASFRALAIGLCLCGK---VARACKILDDLAPMGIIPETA-FEDMINTLCKAQRI 585

Query: 484 NEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
            EA +L   I + G   P +I+  L +   +AG
Sbjct: 586 KEACKLADGIVDRGREIPGRIRTVLINALRKAG 618



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 128/293 (43%), Gaps = 4/293 (1%)

Query: 289 VPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMS 348
           V  I     L+ + + + +L + +  F  L+  G    +   NS+I ++ N G  +  + 
Sbjct: 147 VHKIECHVSLIELLTFSADLVKIRLVFFELKDRGLLMTESAANSLIKSFGNLGLVEELLW 206

Query: 349 LVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYG 408
           +   M  +GI+ S   Y  L+        +  A ++  +M   +  P   +  ++++ Y 
Sbjct: 207 VWRRMKENGIDPSLYTYNFLVNGLVNSMFIESAEKVFEVMDGGKIVPDTVTYNIMIKGYC 266

Query: 409 QAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPA 468
           +AG   +A   F  M     KPD     ++I A   +   D  L+L LE+E+ G E  P 
Sbjct: 267 KAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQACYSERDFDTCLSLYLEMEERGLEIPPH 326

Query: 469 TYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFL 528
           +Y++++  L + +   EA  +   +++ G      I  +L D Y++ G  ++A++   F 
Sbjct: 327 SYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRL--FE 384

Query: 529 EAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
             K E   PD   +  ++NGL   G L D   +      +G A +     +LI
Sbjct: 385 RMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYASLI 437


>gi|147841407|emb|CAN66681.1| hypothetical protein VITISV_005087 [Vitis vinifera]
          Length = 882

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 108/228 (47%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +S  + + NV  Y+ LIDA+ K  CLEDA  +  +M    +VPD+VT T +++   K+G 
Sbjct: 78  ISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGK 137

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           ++ AK  F  +   G  P++  Y ++I +    G       L   M+  GI     +Y A
Sbjct: 138 VEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTA 197

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    + G    A  +  ++  E   P   + + L++ + + GD ++       M    
Sbjct: 198 LMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKH 257

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
             P+    +S++  Y KK LL++A++++ ++ +    P    Y  L+D
Sbjct: 258 IFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLID 305



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/283 (20%), Positives = 123/283 (43%), Gaps = 12/283 (4%)

Query: 251 ESFQTNVRD---------YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM 301
           ESF T +R          ++ +I+A+ KE  L +A ++L +M   G+ P+ +T  +LV  
Sbjct: 421 ESFHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQR 480

Query: 302 YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS 361
              AG +++  +    +   GF P    + +++ A   + +  + +   D ++  G++  
Sbjct: 481 LCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVILHXHDQLVGMGVKLD 540

Query: 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421
              Y  L+ +F + G +R A  +   M  +     + +   L+  Y  +    +A +   
Sbjct: 541 LSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAFAVHS 600

Query: 422 YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ 481
            M+  G  P+      ++       L+ +A  L+ ++++ G  P   TY +LV   G++ 
Sbjct: 601 QMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIG 660

Query: 482 LINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQA 524
            + E  +L  ++   G  P  +    L   +A+    KK  QA
Sbjct: 661 NMKECVKLYCEMITKGFVPKTRTYNVLISCFAKG---KKMSQA 700



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/303 (21%), Positives = 130/303 (42%), Gaps = 5/303 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  ++ LID + +   +  A  +L+ M   G  PDIVT   L++ + K G+L  AK+  
Sbjct: 16  SVEHFNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLM 75

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +     +P+   Y ++I AY  +   +  + + D M    +      Y  ++    + 
Sbjct: 76  GEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKS 135

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G V  A  +   M      P   S   L+++  + G+  +A      M+  G   D    
Sbjct: 136 GKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVY 195

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            +++    K  + + A ++   L ++   P   TY+ L+D   +L  +N+ E LL ++ E
Sbjct: 196 TALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEE 255

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
               P   +  S+ D Y + G+  +A+  +   +  +  + P+ F   + G L  G+ + 
Sbjct: 256 KHIFPNVIVYSSIVDGYTKKGLLNEAMDVM--RKMVQRNILPNVF---VYGTLIDGYFKA 310

Query: 556 AQR 558
            QR
Sbjct: 311 DQR 313



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 128/284 (45%), Gaps = 3/284 (1%)

Query: 218 LQPSRIDWINLLDRLREQNTQL-YFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L P R+++ +++D   +   +   F +A+  ++E+S   +V  Y+ LI+   K    E +
Sbjct: 363 LLPDRVNYTSMMDGFFKAGKESDAFNIAQ-EMTEKSSGFDVVAYNVLINGLFKLGKYE-S 420

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
           E     M + G+ PD  T   +++ Y K GNL  A +    ++S+G +P+    N ++  
Sbjct: 421 ESFHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQR 480

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
              AG+ +  M L++ M+  G   +   + A+L + ++           + +     +  
Sbjct: 481 LCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVILHXHDQLVGMGVKLD 540

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           L +   L+  + + G   +A   F  M+  G   D     ++I  Y   + L KA  +  
Sbjct: 541 LSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAFAVHS 600

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
           ++  +G  P   TY +L+  L   +LI EA  L+ ++ E G  P
Sbjct: 601 QMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVP 644



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 80/373 (21%), Positives = 150/373 (40%), Gaps = 20/373 (5%)

Query: 218 LQPSRIDWINLLD-----RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC 272
           L+P+ I +  L+D     +  E    +Y +     ++ +S   +V  Y+ +++   K   
Sbjct: 83  LEPNVITYTTLIDAYCKSQCLEDALYMYDE-----MTVKSLVPDVVTYTCIMNGLCKSGK 137

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           +E+A+ + ++M E G+VP+  +   L+    K GN+  A      +   G   D  VY +
Sbjct: 138 VEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTA 197

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           ++     AG       +  +++   +  +   Y AL+    + GDV     +   M  + 
Sbjct: 198 LMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKH 257

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P +   + +V+ Y + G  ++A      M++    P+     ++I  Y K +    AL
Sbjct: 258 IFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIAL 317

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
           +L  E++  G E         V+ L R   + EA++L   +   G  P      S+ D +
Sbjct: 318 DLFKEMKSRGLEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGF 377

Query: 513 ARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572
            +AG E  A      +  K        +  +INGL   G   +++  H  M   G A   
Sbjct: 378 FKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGLFKLG-KYESESFHTGMRQLGLAP-- 434

Query: 573 RLKVALISSQTFN 585
                   S TFN
Sbjct: 435 -------DSATFN 440



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/264 (21%), Positives = 112/264 (42%)

Query: 296 TVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMIT 355
            VL+  Y + G + RA E  E +++ G  PD   YN+++  +   G       L+  +  
Sbjct: 21  NVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISL 80

Query: 356 SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ 415
             +E +   Y  L+ ++ +   +  A  + + M ++   P + + T ++    ++G  ++
Sbjct: 81  VNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVEE 140

Query: 416 ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
           A+S F  M  +G  P+    A++I +  K+  + +A  L   +   G       YT L+D
Sbjct: 141 AKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALMD 200

Query: 476 WLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQM 535
            L +  + N AE +   + E    P      +L D + + G   K    L  +E K    
Sbjct: 201 GLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFP 260

Query: 536 GPDDFERIINGLLAGGFLQDAQRV 559
               +  I++G    G L +A  V
Sbjct: 261 NVIVYSSIVDGYTKKGLLNEAMDV 284



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/200 (21%), Positives = 87/200 (43%)

Query: 358 IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
           I RS E +  L+  + + G++  A ++   M+ E   P + +   L+  + + GD   A+
Sbjct: 13  IRRSVEHFNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAK 72

Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
                +  +  +P+     ++I AY K   L+ AL +  E+      P   TYT +++ L
Sbjct: 73  KLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGL 132

Query: 478 GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP 537
            +   + EA+ +  ++ E+G  P      +L D   + G   +A    G +  +      
Sbjct: 133 CKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDV 192

Query: 538 DDFERIINGLLAGGFLQDAQ 557
             +  +++GL   G   +A+
Sbjct: 193 VVYTALMDGLFKAGMANNAE 212



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 1/103 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E     N   Y  L+  H K   +++  ++  +M   G VP   T  VL+  ++K   
Sbjct: 637 MKERGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAKGKK 696

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMA-YVNAGQPKLGMSL 349
           + +AKE  + ++  G  P+   Y+ +I   Y  + QP+L  SL
Sbjct: 697 MSQAKELMQEMQVRGIPPNSSTYDILICGWYKLSKQPELNKSL 739



 Score = 40.0 bits (92), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 41/196 (20%), Positives = 84/196 (42%), Gaps = 4/196 (2%)

Query: 386 NIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKK 445
           N  +  E + ++E   +L++ Y + G+  +A    + M   G  PD     +++  + K 
Sbjct: 6   NTYQHPEIRRSVEHFNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKI 65

Query: 446 NLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQ 505
             L  A  L+ E+     EP   TYT L+D   + Q + +A  +  +++     P     
Sbjct: 66  GDLFTAKKLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTY 125

Query: 506 VSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFE--RIINGLLAGGFLQDAQRVHGLM 563
             + +   ++G  ++A     F E ++  + P+ F    +I+ L   G + +A  + G M
Sbjct: 126 TCIMNGLCKSGKVEEAKSV--FREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRM 183

Query: 564 EAQGFAASERLKVALI 579
             +G      +  AL+
Sbjct: 184 VVRGIGFDVVVYTALM 199


>gi|334182978|ref|NP_001185123.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
 gi|332193283|gb|AEE31404.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 811

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 130/278 (46%), Gaps = 5/278 (1%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E  F+  +   +K++   + +  +E A R+L  + + G  P++VT   L++ + K G +D
Sbjct: 245 ERGFRVGIVSCNKVLKGLSVDQ-IEVASRLLSLVLDCGPAPNVVTFCTLINGFCKRGEMD 303

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
           RA + F+ +   G +PD   Y+++I  Y  AG   +G  L    +  G++    ++ + +
Sbjct: 304 RAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTI 363

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
             + + GD+  A  +   M  +   P + + T+L++   Q G   +A   +  +++ G +
Sbjct: 364 DVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGME 423

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           P     +S+I  + K   L     L  ++ K G+ P    Y VLVD L +  L+  A + 
Sbjct: 424 PSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRF 483

Query: 490 LGKISELGEAPPFKIQV--SLCDMYARAGIEKKALQAL 525
              +  LG++    + V  SL D + R     +AL+  
Sbjct: 484 --SVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVF 519



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 109/246 (44%), Gaps = 2/246 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  +  LI+   K   ++ A  + K M + GI PD++  + L+  Y KAG L    + F
Sbjct: 285 NVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLF 344

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
                 G + D  V++S I  YV +G       +   M+  GI  +   Y  L++   Q 
Sbjct: 345 SQALHKGVKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQD 404

Query: 376 GDVRGA-GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
           G +  A G    I++    +P++ + + L++ + + G+     + ++ MI++G+ PD   
Sbjct: 405 GRIYEAFGMYGQILK-RGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVI 463

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
              ++    K+ L+  A+   +++           +  L+D   RL   +EA ++   + 
Sbjct: 464 YGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMG 523

Query: 495 ELGEAP 500
             G  P
Sbjct: 524 IYGIKP 529



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/373 (20%), Positives = 158/373 (42%), Gaps = 12/373 (3%)

Query: 215 KELLQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCL 273
           K  ++PS + + +L+D   +  N +  F + E ++ +  +  +V  Y  L+D  +K+  +
Sbjct: 419 KRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMI-KMGYPPDVVIYGVLVDGLSKQGLM 477

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
             A R   KM    I  ++V    L+  + +    D A + F  +  +G +PD   + ++
Sbjct: 478 LHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTV 537

Query: 334 ----IM--AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNI 387
               IM  A+    +P +G+ L D+M  + I     +   ++    +C  +  A +  N 
Sbjct: 538 MRVSIMEDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNN 597

Query: 388 MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447
           +   + +P + +   ++  Y      D+A   F+ +      P+      +I    K N 
Sbjct: 598 LIEGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILIHVLCKNND 657

Query: 448 LDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVS 507
           +D A+ +   + + G +P   TY  L+DW  +   I  + +L  ++ E G +P       
Sbjct: 658 MDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEKGISPSIVSYSI 717

Query: 508 LCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEA 565
           + D   + G   +A     F +A   ++ PD   +  +I G    G L +A  ++  M  
Sbjct: 718 IIDGLCKRGRVDEATNI--FHQAIDAKLLPDVVAYAILIRGYCKVGRLVEAALLYEHMLR 775

Query: 566 QGFAASERLKVAL 578
            G    + L+ AL
Sbjct: 776 NGVKPDDLLQRAL 788



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/258 (21%), Positives = 106/258 (41%), Gaps = 10/258 (3%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           +    NV  Y+ LI    ++  + +A  +  ++ + G+ P IVT + L+  + K GNL  
Sbjct: 385 QGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRS 444

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
               +E +   G+ PD  +Y  ++      G     M     M+   I  +  ++ +L+ 
Sbjct: 445 GFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLID 504

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV------EAYGQAGDPDQARSNFDYMI 424
            + +      A ++  +M I   +P + + T ++      +A+ +   P      FD M 
Sbjct: 505 GWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEDAFCKHMKPTIGLQLFDLMQ 564

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
           R     D      +I    K + ++ A      L +   EP   TY  ++     L+ ++
Sbjct: 565 RNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLD 624

Query: 485 EAEQLLGKISELGEAPPF 502
           EAE    +I EL +  PF
Sbjct: 625 EAE----RIFELLKVTPF 638


>gi|326513552|dbj|BAJ87795.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 538

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/338 (21%), Positives = 143/338 (42%), Gaps = 35/338 (10%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +     + N   Y+ L+D + ++        +LK+M   G+ P + T T+LV   S AG+
Sbjct: 159 MPRHGVKLNACCYNPLLDTYTRQKNDARVAEVLKEMESGGVEPTVGTYTILVDGLSTAGD 218

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           + + +  F+ ++      D   Y+++I AY  AG  +    + D  + +GIE +E  Y A
Sbjct: 219 ISKVESVFDEIKRKNVAGDVYFYSAVINAYCRAGNVRRASEVFDECVGNGIEPNERTYGA 278

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+  F + G +  A  +   M++                                   +G
Sbjct: 279 LINGFCKIGQIEAAEMLLTDMQLRG---------------------------------VG 305

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
           H  +     +MI  Y +  ++DKAL +   +E+ G +    TY  L   L R+  + +A+
Sbjct: 306 H--NQIIFNTMIDGYCRHGMVDKALEIKAVMERMGIQLDVYTYNTLACGLCRVNRMEDAK 363

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
           +LL  ++E G    +    +L  ++++ G   +A +    +E K  +     +  +I+G 
Sbjct: 364 KLLHIMTENGVESNYVSYTTLISIHSKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGY 423

Query: 548 LAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFN 585
           +  G +++A+R    ME +G         AL+     N
Sbjct: 424 IKSGSIREAERFKKEMEKKGLVPDVYTYAALVHGHCVN 461



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 84/401 (20%), Positives = 174/401 (43%), Gaps = 9/401 (2%)

Query: 193 LITDKILSLEKEEDPSPLLAEW-KELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEE 251
           ++ D      + +D   LL E  +  ++ +   +  LLD    Q      +VAE++   E
Sbjct: 138 VVVDGFCKAGRMDDARRLLDEMPRHGVKLNACCYNPLLDTYTRQKNDA--RVAEVLKEME 195

Query: 252 S--FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           S   +  V  Y+ L+D  +    +   E +  ++    +  D+   + +++ Y +AGN+ 
Sbjct: 196 SGGVEPTVGTYTILVDGLSTAGDISKVESVFDEIKRKNVAGDVYFYSAVINAYCRAGNVR 255

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
           RA E F+    +G +P+++ Y ++I  +   GQ +    L+  M   G+  ++ I+  ++
Sbjct: 256 RASEVFDECVGNGIEPNERTYGALINGFCKIGQIEAAEMLLTDMQLRGVGHNQIIFNTMI 315

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
             + + G V  A +I  +M     Q  + +   L     +    + A+     M   G +
Sbjct: 316 DGYCRHGMVDKALEIKAVMERMGIQLDVYTYNTLACGLCRVNRMEDAKKLLHIMTENGVE 375

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
            +     ++I+ + K+  + +A  L  ++E  G  P   TY V++D   +   I EAE+ 
Sbjct: 376 SNYVSYTTLISIHSKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAERF 435

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGL 547
             ++ + G  P      +L   +   G    AL+   F E K+    P+   +  +I+GL
Sbjct: 436 KKEMEKKGLVPDVYTYAALVHGHCVNGKVDVALRL--FEEMKQRGAKPNVVAYTALISGL 493

Query: 548 LAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQR 588
              G  ++A + +  M A G    + L   L+ S   ++++
Sbjct: 494 AKEGRSEEAFQFYDNMLAAGLTPDDTLYSMLVGSLHTDKRK 534



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 84/176 (47%), Gaps = 4/176 (2%)

Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
           S +++V+ + +AG  D AR   D M R G K +  C   ++  Y ++    +   +L E+
Sbjct: 135 SASVVVDGFCKAGRMDDARRLLDEMPRHGVKLNACCYNPLLDTYTRQKNDARVAEVLKEM 194

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
           E  G EP   TYT+LVD L     I++ E +  +I     A       ++ + Y RAG  
Sbjct: 195 ESGGVEPTVGTYTILVDGLSTAGDISKVESVFDEIKRKNVAGDVYFYSAVINAYCRAGNV 254

Query: 519 KKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572
           ++A +   F E     + P++  +  +ING    G ++ A+ +   M+ +G   ++
Sbjct: 255 RRASEV--FDECVGNGIEPNERTYGALINGFCKIGQIEAAEMLLTDMQLRGVGHNQ 308


>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
 gi|224030695|gb|ACN34423.1| unknown [Zea mays]
 gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
          Length = 756

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/324 (22%), Positives = 142/324 (43%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +++   Q +V   + LI A  + + +  A  +L++M+ + + PD  T T L+  + + G+
Sbjct: 186 MTDRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGS 245

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           ++ A      +   G  P +   N +I  Y   G+ +  +  +   I  G E  +  Y  
Sbjct: 246 IEAALRVKTKMMETGCSPTRVTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNT 305

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
            +    Q G V  A ++ ++M  E   P + +   ++    + G+ D+A+   + M+  G
Sbjct: 306 FVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRG 365

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD     ++I A   +N L++AL+L  EL   G  P   T+ +L++ L ++   +   
Sbjct: 366 CLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGI 425

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
           +L  ++   G AP       L D     G    AL  L  +E+         +  II+ L
Sbjct: 426 RLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDAL 485

Query: 548 LAGGFLQDAQRVHGLMEAQGFAAS 571
                +++A+ V   M+A G + S
Sbjct: 486 CKQMRIEEAEEVFDQMDAHGISRS 509



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 93/413 (22%), Positives = 156/413 (37%), Gaps = 73/413 (17%)

Query: 242 KVAELVLSEESFQTNVRD---YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVL 298
           + A L+L E S      D   ++ L+    +E  +E A R+  KM E G  P  VT  VL
Sbjct: 212 RTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAALRVKTKMMETGCSPTRVTVNVL 271

Query: 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
           ++ Y K G ++ A    +   + GF+PD+  YN+ +      G     + ++D+M+  G 
Sbjct: 272 INGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGH 331

Query: 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIM-----------------------RIEE--- 392
           +     Y  ++   ++ G++  A  I N M                       R+EE   
Sbjct: 332 DPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALD 391

Query: 393 ---------FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYG 443
                      P + +  +L+ A  + GDP      F+ M   G  PD+     +I    
Sbjct: 392 LARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLC 451

Query: 444 KKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG---EAP 500
               L  AL+LL E+E +G      TY  ++D L +   I EAE++  ++   G    A 
Sbjct: 452 SMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAV 511

Query: 501 PFKIQV--------------------------------SLCDMYARAGIEKKALQALGFL 528
            F   +                                S+   Y + G  KKA   L  +
Sbjct: 512 TFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILETM 571

Query: 529 EAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
            A   ++    +  +INGL   G  Q A ++   M  +G   + +    +I S
Sbjct: 572 TANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQS 624



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 106/253 (41%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L+ +    +V  ++ LI+A  K        R+ ++M  +G  PD VT  +L+      G 
Sbjct: 396 LTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGK 455

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L  A +  + + S+G       YN++I A     + +    + D M   GI RS   +  
Sbjct: 456 LVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNT 515

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    +   +  A ++   M  E  QP+  +   ++  Y + GD  +A    + M   G
Sbjct: 516 LIDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMTANG 575

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            + D     ++I    K      AL LL  +   G  P P  Y  ++  L R   + +A 
Sbjct: 576 FEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDAL 635

Query: 488 QLLGKISELGEAP 500
            L  +++E+GE P
Sbjct: 636 SLFREMTEVGEPP 648



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 79/394 (20%), Positives = 169/394 (42%), Gaps = 27/394 (6%)

Query: 196 DKILS-LEKEEDPSPLL-----AEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLS 249
           D++L+ L ++ DP   L     A  +E   PSR  +  ++ +L    T   F + E ++ 
Sbjct: 57  DRLLTALREQADPEAALQMLNSALAREDFAPSRAVYEEIIQKL---GTAGAFDLMEGLVR 113

Query: 250 E---ESFQTNVRDYSKLIDAHAKENCLEDAERILK-KMNENGIVPDIVTSTVLVHMYSKA 305
           E   E  +         ++++A+    +DA  +++ ++N  G+  D      L+++ ++ 
Sbjct: 114 EMRREGHEAGAGVVRSFVESYARLRRFDDAVDLVRNQLNTFGVQADTAVYNHLLNVLAEG 173

Query: 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
             +   +  +  +   G QPD    N++I A   A Q +  + +++ M +  +   E  +
Sbjct: 174 SRMKLLESVYNEMTDRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETTF 233

Query: 366 LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
             L++ F + G +  A ++   M      PT  +  +L+  Y + G  + A       I 
Sbjct: 234 TTLMQGFIEEGSIEAALRVKTKMMETGCSPTRVTVNVLINGYCKMGRVEDALGYIQKEIA 293

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
            G +PD     + +    +   +  AL ++  + ++G +P   TY  +++ L +   ++E
Sbjct: 294 DGFEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDE 353

Query: 486 AEQLLGKISELGEAPPF----KIQVSLCDMYARAGIEKKALQALGFL-EAKKEQMGPD-- 538
           A+ ++ ++ + G  P       + V+LC        + +  +AL    E   + + PD  
Sbjct: 354 AKGIVNQMVDRGCLPDTTTFNTLIVALCS-------QNRLEEALDLARELTVKGLSPDVY 406

Query: 539 DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572
            F  +IN L   G      R+   M++ G A  E
Sbjct: 407 TFNILINALCKVGDPHLGIRLFEEMKSSGCAPDE 440



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 72/183 (39%), Gaps = 11/183 (6%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + +E  Q +   Y+ ++  + K+  L+ A  IL+ M  NG   D+VT   L++   KAG 
Sbjct: 536 MVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLINGLCKAGR 595

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
              A +    +R  G +P  K YN +I +       +  +SL   M   G       Y  
Sbjct: 596 TQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALSLFREMTEVGEPPDALTYKI 655

Query: 368 LLRSFAQCGDVRGAGQITNI------MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421
           + R     G  RG G I         M  + F P   S  +L E     G  D   S  +
Sbjct: 656 VFR-----GLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRMLAEGLLNLGMDDYLISAIE 710

Query: 422 YMI 424
            +I
Sbjct: 711 LII 713



 Score = 40.4 bits (93), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 65/153 (42%), Gaps = 5/153 (3%)

Query: 194 ITDKILSLEKEEDPSPLLAEW-KELLQPSRIDWINLLDRLREQNTQLYFKVAELV--LSE 250
           + D +   ++ +D + L+ +  KE LQPS I + ++L    +Q      K A+++  ++ 
Sbjct: 516 LIDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGD--LKKAADILETMTA 573

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
             F+ +V  Y  LI+   K    + A ++L+ M   GI P       ++    +  NL  
Sbjct: 574 NGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRD 633

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343
           A   F  +   G  PD   Y  +       G P
Sbjct: 634 ALSLFREMTEVGEPPDALTYKIVFRGLCRGGGP 666


>gi|15222409|ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400
 gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana]
 gi|332195974|gb|AEE34095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 577

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 134/310 (43%), Gaps = 5/310 (1%)

Query: 194 ITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKVAELV--LSE 250
           + D +     E+D   L  E +   ++P+ I + +L+  L   N + +   + L+  + E
Sbjct: 266 VIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCL--CNYERWSDASRLLSDMIE 323

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
                NV  ++ LIDA  KE  L +AE++  +M +  I PDI T + L++ +     LD 
Sbjct: 324 RKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDE 383

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           AK  FE + S    P+   YN++I  +  A +   G+ L   M   G+  +   Y  L+ 
Sbjct: 384 AKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIH 443

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
            F Q  D   A  +   M  +   P + +   L++   + G  ++A   F+Y+ R   +P
Sbjct: 444 GFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEP 503

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
                  MI    K   ++   +L   L   G +P    Y  ++    R  L  EA+ L 
Sbjct: 504 TIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALF 563

Query: 491 GKISELGEAP 500
            K+ E G  P
Sbjct: 564 RKMREDGPLP 573



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/273 (20%), Positives = 122/273 (44%), Gaps = 1/273 (0%)

Query: 198 ILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTN 256
           + + E+  D S LL++  E  + P+ + +  L+D   ++   +  +     + + S   +
Sbjct: 305 LCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 364

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           +  YS LI+     + L++A+ + + M      P++VT   L++ + KA  +D   E F 
Sbjct: 365 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFR 424

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
            +   G   +   Y ++I  +  A        +   M++ G+  +   Y  LL    + G
Sbjct: 425 EMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNG 484

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
            +  A  +   ++  + +PT+ +  +++E   +AG  +     F  +   G KPD     
Sbjct: 485 KLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYN 544

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPAT 469
           +MI+ + +K L ++A  L  ++ +DG  P   T
Sbjct: 545 TMISGFCRKGLKEEADALFRKMREDGPLPDSGT 577



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/303 (21%), Positives = 122/303 (40%), Gaps = 35/303 (11%)

Query: 254 QTNVRDYSKLIDAHAK--------------EN---------------CL------EDAER 278
           + NV  YS +ID+  K              EN               CL       DA R
Sbjct: 257 EANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASR 316

Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338
           +L  M E  I P++VT   L+  + K G L  A++ ++ +      PD   Y+S+I  + 
Sbjct: 317 LLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFC 376

Query: 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398
              +      + ++MI+     +   Y  L+  F +   +    ++   M          
Sbjct: 377 MHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTV 436

Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
           + T L+  + QA D D A+  F  M+  G  P+     +++    K   L+KA+ +   L
Sbjct: 437 TYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 496

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
           ++   EP   TY ++++ + +   + +   L   +S  G  P   I  ++   + R G++
Sbjct: 497 QRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLK 556

Query: 519 KKA 521
           ++A
Sbjct: 557 EEA 559



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 79/362 (21%), Positives = 143/362 (39%), Gaps = 56/362 (15%)

Query: 207 PSPLLAEWKELLQP-SRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLID 265
           P P + E+ +LL   +++   +L+  L E+  +L                N+  Y+ LI+
Sbjct: 81  PLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRL------------GISHNLYTYNILIN 128

Query: 266 AHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQP 325
              + + +  A  +L KM + G  P IVT + L++ Y     +  A    + +   G++P
Sbjct: 129 CFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRP 188

Query: 326 DKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQIT 385
           D   + ++I       +    ++LVD M+  G + +   Y  ++    + GD+  A  + 
Sbjct: 189 DTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLL 248

Query: 386 NIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKK 445
           N M   + +         V  Y             D + +  H+                
Sbjct: 249 NKMEAAKIEAN-------VVIYSTV---------IDSLCKYRHE---------------- 276

Query: 446 NLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQ 505
              D ALNL  E+E  G  P   TY+ L+  L   +  ++A +LL  + E    P     
Sbjct: 277 ---DDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTF 333

Query: 506 VSLCDMYARAG--IEKKALQALGFLEAKKEQMGPDDF--ERIINGLLAGGFLQDAQRVHG 561
            +L D + + G  +E + L    + E  K  + PD F    +ING      L +A+ +  
Sbjct: 334 NALIDAFVKEGKLVEAEKL----YDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFE 389

Query: 562 LM 563
           LM
Sbjct: 390 LM 391



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/251 (21%), Positives = 115/251 (45%), Gaps = 2/251 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E  ++ +   ++ LI      N   +A  ++ +M + G  P++VT  V+V+   K G+
Sbjct: 181 MVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGD 240

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D A      + +   + +  +Y+++I +          ++L   M   G+  +   Y +
Sbjct: 241 IDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSS 300

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+           A ++ + M   +  P + +   L++A+ + G   +A   +D MI+  
Sbjct: 301 LISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRS 360

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLL-LELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
             PD    +S+I  +   + LD+A ++  L + KD F P   TY  L++   + + I+E 
Sbjct: 361 IDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCF-PNVVTYNTLINGFCKAKRIDEG 419

Query: 487 EQLLGKISELG 497
            +L  ++S+ G
Sbjct: 420 VELFREMSQRG 430



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 61/309 (19%), Positives = 123/309 (39%)

Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311
           +F +   DY +++        L+DA  +   M ++  +P I     L+   +K    D  
Sbjct: 45  AFSSGSGDYREILRNGLHSMKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLV 104

Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
               E ++  G   +   YN +I  +    Q  L ++L+  M+  G E S     +LL  
Sbjct: 105 ISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNG 164

Query: 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
           +     +  A  + + M    ++P   + T L+          +A +  D M++ G +P+
Sbjct: 165 YCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPN 224

Query: 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
                 ++    K+  +D A NLL ++E    E     Y+ ++D L + +  ++A  L  
Sbjct: 225 LVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFT 284

Query: 492 KISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGG 551
           ++   G  P      SL            A + L  +  +K       F  +I+  +  G
Sbjct: 285 EMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEG 344

Query: 552 FLQDAQRVH 560
            L +A++++
Sbjct: 345 KLVEAEKLY 353


>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
 gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 101/450 (22%), Positives = 190/450 (42%), Gaps = 9/450 (2%)

Query: 126 GKAAAECAEVEEKPKVITLPKRHG--KIKYKIYGLDL---SDPKWTEVAEKIHERGEMI- 179
           G+     A+ ++   V++L  +     + + +Y L++      +   V   I   G+M  
Sbjct: 96  GRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVYSLNILINCLCRLNHVVFAISVLGKMFK 155

Query: 180 LPEEPKPITGKCKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRL-REQNTQ 238
           L  +P  IT    LI  + +  E +E         +   QP  I +  +++ L +  NT 
Sbjct: 156 LGIQPDAITFN-TLINGRCIEGEIKEAVGLFNEMVRRGHQPDVISYSTVINGLCKSGNTS 214

Query: 239 LYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVL 298
           +  ++    + E+  + N+  Y+ +ID+  K+  + DA  +L +M + GI PD+VT + +
Sbjct: 215 MALQLLR-KMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTI 273

Query: 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
           +H +   G+L+ A   F  +      P+   +  ++      G       + + M   G 
Sbjct: 274 LHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGA 333

Query: 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418
           E +   Y AL+  +     +  A ++ +IM  +   P + S  +L+  Y +    D+A+S
Sbjct: 334 EPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKS 393

Query: 419 NFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLG 478
               M      PD    ++++    +     +ALNL  E+   G  P   TY+ L+D L 
Sbjct: 394 LLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLC 453

Query: 479 RLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
           +   ++EA +LL  + E    P   +   L +    AG  + A +    L A   Q    
Sbjct: 454 KHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAKELFSKLFADGIQPTIR 513

Query: 539 DFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
            +  +I GLL  G   +A  +   ME  GF
Sbjct: 514 TYTIMIKGLLKEGLSDEAYELFRKMEDDGF 543



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 120/257 (46%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           + P+ + +  L+D L ++      +     ++++  + N   Y+ L+D +   N +++A+
Sbjct: 298 VMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQ 357

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
           ++L  M + G  P + +  +L++ Y K   LD AK     +      PD   Y++++   
Sbjct: 358 KVLDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGL 417

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
              G+P+  ++L   M +SG+      Y  LL    + G +  A ++   M+  + +P +
Sbjct: 418 CQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDI 477

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
               +L+E    AG  + A+  F  +   G +P  R    MI    K+ L D+A  L  +
Sbjct: 478 VLYNILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRK 537

Query: 458 LEKDGFEPGPATYTVLV 474
           +E DGF P   +Y V++
Sbjct: 538 MEDDGFLPNSCSYNVII 554



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/326 (22%), Positives = 138/326 (42%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           Q +V  YS +I+   K      A ++L+KM E G  P++V  T ++    K   ++ A +
Sbjct: 194 QPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMD 253

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
               +   G  PD   Y++++  + + G       L + M+   +  +   +  L+    
Sbjct: 254 LLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLC 313

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           + G V  A  +   M  +  +P   +   L++ Y      D+A+   D M+  G  P   
Sbjct: 314 KEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVH 373

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
               +I  Y K+  LD+A +LL+E+ +    P   TY+ L+  L ++    EA  L  ++
Sbjct: 374 SYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEM 433

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFL 553
              G  P      +L D   + G   +AL+ L  ++  K +     +  +I G+   G L
Sbjct: 434 CSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKL 493

Query: 554 QDAQRVHGLMEAQGFAASERLKVALI 579
           + A+ +   + A G   + R    +I
Sbjct: 494 EVAKELFSKLFADGIQPTIRTYTIMI 519



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 105/228 (46%)

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           V  Y+ LI+ + K   L++A+ +L +M+E  + PD VT + L+    + G    A   F+
Sbjct: 372 VHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFK 431

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
            + S G  PD   Y++++      G     + L+  M  S IE    +Y  L+      G
Sbjct: 432 EMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAG 491

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
            +  A ++ + +  +  QPT+ + T++++   + G  D+A   F  M   G  P+     
Sbjct: 492 KLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFLPNSCSYN 551

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
            +I  + +      A+ L+ E+    F    +T+ +L+D   R ++I+
Sbjct: 552 VIIQGFLQNQDSSTAIRLIDEMVGKRFSADSSTFQMLLDLESRDEIIS 599



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/291 (18%), Positives = 123/291 (42%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V ++ + + + AK+        +  +M+  G+  ++ +  +L++   +  ++  A    
Sbjct: 91  SVVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVYSLNILINCLCRLNHVVFAISVL 150

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G QPD   +N++I      G+ K  + L + M+  G +     Y  ++    + 
Sbjct: 151 GKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRGHQPDVISYSTVINGLCKS 210

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G+   A Q+   M  +  +P L + T ++++  +    + A      M+  G  PD    
Sbjct: 211 GNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTY 270

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
           ++++  +     L++A  L  E+      P   T+T+LVD L +  +++EA  +   +++
Sbjct: 271 STILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMTK 330

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
            G  P      +L D Y       +A + L  +  K        +  +ING
Sbjct: 331 KGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILING 381



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 84/177 (47%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +SE+    +   YS L+    +    ++A  + K+M  +G++PD++T + L+    K G+
Sbjct: 398 MSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGH 457

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           LD A +  +S++    +PD  +YN +I     AG+ ++   L   +   GI+ +   Y  
Sbjct: 458 LDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTI 517

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
           +++   + G    A ++   M  + F P   S  ++++ + Q  D   A    D M+
Sbjct: 518 MIKGLLKEGLSDEAYELFRKMEDDGFLPNSCSYNVIIQGFLQNQDSSTAIRLIDEMV 574



 Score = 40.4 bits (93), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 70/157 (44%), Gaps = 6/157 (3%)

Query: 414 DQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVL 473
           D A ++F  M+R+  +P        + +  KK      ++L  +++  G      +  +L
Sbjct: 74  DDALASFYRMLRMNPRPSVVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVYSLNIL 133

Query: 474 VDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALG-FLEAKK 532
           ++ L RL  +  A  +LGK+ +LG  P     ++   +     IE +  +A+G F E  +
Sbjct: 134 INCLCRLNHVVFAISVLGKMFKLGIQPD---AITFNTLINGRCIEGEIKEAVGLFNEMVR 190

Query: 533 EQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQG 567
               PD   +  +INGL   G    A ++   ME +G
Sbjct: 191 RGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKG 227


>gi|15221300|ref|NP_177597.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169839|sp|Q9CA58.1|PP120_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g74580
 gi|12324819|gb|AAG52381.1|AC011765_33 hypothetical protein; 77097-79388 [Arabidopsis thaliana]
 gi|332197491|gb|AEE35612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 763

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 143/325 (44%), Gaps = 14/325 (4%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
            L E+  + +V  Y+ LI    K +  ++AE  L KM   G+ PD  T   L+  Y K G
Sbjct: 276 CLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGG 335

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            +  A+        +GF PD+  Y S+I    + G+    ++L +  +  GI+ +  +Y 
Sbjct: 336 MVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYN 395

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L++  +  G +  A Q+ N M  +   P +++  +LV    + G    A      MI  
Sbjct: 396 TLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISK 455

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G+ PD      +I  Y  +  ++ AL +L  +  +G +P   TY  L++ L +     + 
Sbjct: 456 GYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDV 515

Query: 487 EQLLGKISELGEAP---PFKIQV-SLCDMYARAGIEKKALQALGFL-EAKKEQMGPD--D 539
            +    + E G AP    F I + SLC         +K  +ALG L E K + + PD   
Sbjct: 516 METYKTMVEKGCAPNLFTFNILLESLCRY-------RKLDEALGLLEEMKNKSVNPDAVT 568

Query: 540 FERIINGLLAGGFLQDAQRVHGLME 564
           F  +I+G    G L  A  +   ME
Sbjct: 569 FGTLIDGFCKNGDLDGAYTLFRKME 593



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 136/316 (43%), Gaps = 12/316 (3%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELV--LSEESFQTNVRDYSKLIDAHAKENCLED 275
           ++P+ I +  L+  L  Q   L  + A+L   +SE+     V+ ++ L++   K  C+ D
Sbjct: 387 IKPNVILYNTLIKGLSNQGMIL--EAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSD 444

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A+ ++K M   G  PDI T  +L+H YS    ++ A E  + +  +G  PD   YNS++ 
Sbjct: 445 ADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLN 504

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
                 + +  M     M+  G   +   +  LL S  +   +  A  +   M+ +   P
Sbjct: 505 GLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNP 564

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIA-AYGKKNLLDKALNL 454
              +   L++ + + GD D A + F  M           T ++I  A+ +K  +  A  L
Sbjct: 565 DAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKL 624

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPF----KIQVSLC- 509
             E+      P   TY ++VD   +   +N   + L ++ E G  P      ++   LC 
Sbjct: 625 FQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRVINCLCV 684

Query: 510 --DMYARAGIEKKALQ 523
              +Y  AGI  + +Q
Sbjct: 685 EDRVYEAAGIIHRMVQ 700



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/314 (21%), Positives = 129/314 (41%), Gaps = 4/314 (1%)

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           V  Y+ ++         + A ++  +M + GI PD+ + T+ +  + K      A     
Sbjct: 111 VFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLN 170

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
           ++ S G + +   Y +++  +        G  L   M+ SG+      +  LLR   + G
Sbjct: 171 NMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKG 230

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
           DV+   ++ + +      P L +  L ++   Q G+ D A      +I  G KPD     
Sbjct: 231 DVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYN 290

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
           ++I    K +   +A   L ++  +G EP   TY  L+    +  ++  AE+++G     
Sbjct: 291 NLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFN 350

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQ 554
           G  P      SL D     G   +AL    F EA  + + P+   +  +I GL   G + 
Sbjct: 351 GFVPDQFTYRSLIDGLCHEGETNRALAL--FNEALGKGIKPNVILYNTLIKGLSNQGMIL 408

Query: 555 DAQRVHGLMEAQGF 568
           +A ++   M  +G 
Sbjct: 409 EAAQLANEMSEKGL 422



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 61/321 (19%), Positives = 123/321 (38%), Gaps = 37/321 (11%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y   +  + ++  +++A  + ++M+     P + +   ++ +   +G  D+A + +  +R
Sbjct: 79  YVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMR 138

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  PD   +   + ++    +P   + L++ M + G E +   Y  ++  F +  + +
Sbjct: 139 DRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYE-ENFK 197

Query: 380 GAG-QITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             G ++   M        L +   L+    + GD  +     D +I+ G  P+       
Sbjct: 198 AEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLF 257

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           I    ++  LD A+ ++  L + G +P   TY  L+  L +     EAE  LGK+   G 
Sbjct: 258 IQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGL 317

Query: 499 APPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQR 558
            P         D Y                           +  +I G   GG +Q A+R
Sbjct: 318 EP---------DSYT--------------------------YNTLIAGYCKGGMVQLAER 342

Query: 559 VHGLMEAQGFAASERLKVALI 579
           + G     GF   +    +LI
Sbjct: 343 IVGDAVFNGFVPDQFTYRSLI 363



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 105/263 (39%), Gaps = 8/263 (3%)

Query: 310 RAKEAFESLRSH-GFQPDKKVYNSMI--MAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           +A E F S+R   GF+     Y S+I  + Y    +  +   LVDM    G    E +Y+
Sbjct: 22  KALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEA-MEEVLVDMRENVGNHMLEGVYV 80

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
             ++++ + G V+ A  +   M   + +PT+ S   ++     +G  DQA   +  M   
Sbjct: 81  GAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDR 140

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G  PD       + ++ K +    AL LL  +   G E     Y  +V          E 
Sbjct: 141 GITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEG 200

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFER--II 544
            +L GK+   G +        L  +  + G  K+  + L   +  K  + P+ F     I
Sbjct: 201 YELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLD--KVIKRGVLPNLFTYNLFI 258

Query: 545 NGLLAGGFLQDAQRVHGLMEAQG 567
            GL   G L  A R+ G +  QG
Sbjct: 259 QGLCQRGELDGAVRMVGCLIEQG 281


>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 618

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 99/215 (46%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS LID   KEN L +A ++L  M   G  P+IVT ++L++ Y KA  +D     F  + 
Sbjct: 352 YSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEIS 411

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           S G   D   YN+++  +  +G+  +   L   M++ G+  S   Y  LL      G+++
Sbjct: 412 SKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQ 471

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A +I   M+       +    +++     A   D A S F  +   G KPD      MI
Sbjct: 472 KALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLTYNVMI 531

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
               KK  L +A  L  ++++DG  P   TY +L+
Sbjct: 532 GGLCKKGSLSEADMLFRKMKEDGCAPSDCTYNILI 566



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 69/308 (22%), Positives = 128/308 (41%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  +++   K      A  + +KM E  I   +V  ++++    K GNLD A   F  + 
Sbjct: 212 YGPVLNRMCKSGNTALALDLFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEME 271

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G + D   Y+S+I    N G+   G  ++  MI   I  +   + AL+  F + G + 
Sbjct: 272 MKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLL 331

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++ N M      P   + + L++ + +     +A    D M+  G +P+    + +I
Sbjct: 332 EAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILI 391

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            +Y K   +D  + L  E+   G      TY  LV    +   +N A++L  ++   G  
Sbjct: 392 NSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVP 451

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P       L D     G  +KAL+    ++  +  +G   +  II+G+     + DA  +
Sbjct: 452 PSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWSL 511

Query: 560 HGLMEAQG 567
              +  +G
Sbjct: 512 FCSLSVKG 519



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 104/237 (43%), Gaps = 3/237 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E S + +V  YS +ID+  K+  L+DA  +  +M   GI  D+V  + ++      G 
Sbjct: 235 MEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGR 294

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            D   +    +      P+   ++++I  +V  G+      L + M+  GI      Y +
Sbjct: 295 WDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSS 354

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+  F +   +  A Q+ ++M  +  +P + + ++L+ +Y +A   D     F  +   G
Sbjct: 355 LIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKG 414

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL---GRLQ 481
              D     +++  + +   L+ A  L  E+   G  P   TY +L+D L   G LQ
Sbjct: 415 LVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQ 471



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 79/375 (21%), Positives = 156/375 (41%), Gaps = 20/375 (5%)

Query: 220 PSRIDWINLLD---RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           PS ID+  L     R +E +  L F   E+ L+    + N+   + +I+   ++  L  A
Sbjct: 67  PSLIDFSKLFSAVARRKEYDLVLGF-CKEMDLN--GIEHNMYTMNIMINCFCRKRKLLFA 123

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
             ++ +  + G  P+ +T + L++ +   G +  A    + +    ++P+    N++I  
Sbjct: 124 FSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDRMVEMKYRPNVVTVNTLING 183

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
               G+    + L+D M+  G E +E  Y  +L    + G+   A  +   M     + +
Sbjct: 184 LCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALALDLFRKMEERSIKAS 243

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           +   ++++++  + G+ D A S F+ M   G K D    +S+I         D    +L 
Sbjct: 244 VVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLR 303

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
           E+      P   T++ L+D   +   + EA++L  ++   G AP      SL D + +  
Sbjct: 304 EMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKEN 363

Query: 517 IEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVH------GLME------ 564
              +A Q L  + +K  +     +  +IN       + +  R+       GL+       
Sbjct: 364 RLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYN 423

Query: 565 --AQGFAASERLKVA 577
              QGF  S +L VA
Sbjct: 424 TLVQGFCQSGKLNVA 438



 Score = 43.5 bits (101), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 51/267 (19%), Positives = 105/267 (39%), Gaps = 47/267 (17%)

Query: 233 REQNTQLYFKVAELV-LSEESFQT----NVRDYSKLIDAHAKENCLEDAERILKKMNENG 287
           R +N  +  KV E + L E   Q+    ++ D+SKL  A A+    +      K+M+ NG
Sbjct: 40  RLRNGIVDIKVNEAIDLFESMIQSRPLPSLIDFSKLFSAVARRKEYDLVLGFCKEMDLNG 99

Query: 288 IVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGM 347
           I  ++ T  ++++ + +   L  A          GF+P+   ++++I  +   G+    +
Sbjct: 100 IEHNMYTMNIMINCFCRKRKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAV 159

Query: 348 SLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAY 407
           +LVD M+                                     +++P + +   L+   
Sbjct: 160 ALVDRMVEM-----------------------------------KYRPNVVTVNTLINGL 184

Query: 408 GQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGP 467
              G   +A    D M++ G + ++     ++    K      AL+L  ++E+   +   
Sbjct: 185 CLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALALDLFRKMEERSIKASV 244

Query: 468 ATYTVLVDWLGR-------LQLINEAE 487
             Y++++D L +       L L NE E
Sbjct: 245 VQYSIVIDSLCKDGNLDDALSLFNEME 271


>gi|449438480|ref|XP_004137016.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 128/301 (42%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E     ++  Y+ L++       +E AE++ + M+   IVPD VT  +++  Y KAG 
Sbjct: 209 MKENGIDPSLYTYNFLVNGLVNSMFIESAEKVFEVMDGGKIVPDTVTYNIMIKGYCKAGK 268

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L +A E F  +     +PDK  Y ++I A  +       +SL   M   G+E     Y  
Sbjct: 269 LQKAMEKFRDMEMKNVKPDKITYMTLIQACYSERDFDTCLSLYLEMEERGLEIPPHSYSL 328

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++    +      A  +   M  +  +  +   T L+++Y + G  ++A   F+ M   G
Sbjct: 329 VIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEG 388

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            +PD    + ++    K   LD  + L       G       Y  L+D LG+   I +AE
Sbjct: 389 FEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAE 448

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
            L  ++SE G A       ++ D  A+ G   +AL   G +E +        F  +I+GL
Sbjct: 449 NLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDGL 508

Query: 548 L 548
            
Sbjct: 509 F 509



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 103/437 (23%), Positives = 181/437 (41%), Gaps = 68/437 (15%)

Query: 160 LSDPKWTEVAEKIHE--RGEMILPEEPKP---ITGKCKLITDKIL-SLEKEEDPSPLLAE 213
           L +  + E AEK+ E   G  I+P+       I G CK    K+  ++EK  D      E
Sbjct: 228 LVNSMFIESAEKVFEVMDGGKIVPDTVTYNIMIKGYCK--AGKLQKAMEKFRD-----ME 280

Query: 214 WKELLQPSRIDWINLLDRL---REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKE 270
            K + +P +I ++ L+      R+ +T L      L + E   +     YS +I    K+
Sbjct: 281 MKNV-KPDKITYMTLIQACYSERDFDTCLSLY---LEMEERGLEIPPHSYSLVIGGLCKQ 336

Query: 271 NCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVY 330
               +A  + + MN+ G   ++   T L+  YSK G+++ A   FE +++ GF+PD   Y
Sbjct: 337 RKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTY 396

Query: 331 NSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRI 390
           + ++     +G+   GM L D     G+  +   Y +                       
Sbjct: 397 SVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYAS----------------------- 433

Query: 391 EEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDK 450
                       L++  G+AG  + A + F+ M   G   D  C  ++I A  K   +D+
Sbjct: 434 ------------LIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQ 481

Query: 451 ALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP------FKI 504
           AL L   +E++G +    T+T+L+D L +     EA +   K+ + G  P         I
Sbjct: 482 ALALFGRMEEEGCDQTVYTFTILIDGLFKEHKNEEAIKFWDKMIDKGITPTVASFRALAI 541

Query: 505 QVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLME 564
            + LC   ARA      L  +G +           FE +IN L     +++A ++   + 
Sbjct: 542 GLCLCGKVARACKILDDLAPMGIIPETA-------FEDMINTLCKAQRIKEACKLADGIV 594

Query: 565 AQGFAASERLKVALISS 581
            +G     R++  LI++
Sbjct: 595 DRGREIPGRIRTVLINA 611



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 131/273 (47%), Gaps = 7/273 (2%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
            ++++  + NV  Y+ LID+++K   +E+A R+ ++M   G  PD VT +VLV+   K+G
Sbjct: 348 TMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSG 407

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            LD   E F+  R+ G   +   Y S+I     AG+ +   +L + M   G  R    Y 
Sbjct: 408 RLDDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYN 467

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           A++ + A+ G +  A  +   M  E    T+ + T+L++   +    ++A   +D MI  
Sbjct: 468 AIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHKNEEAIKFWDKMIDK 527

Query: 427 GHKP---DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483
           G  P     R  A  +   GK   + +A  +L +L   G  P  A +  +++ L + Q I
Sbjct: 528 GITPTVASFRALAIGLCLCGK---VARACKILDDLAPMGIIPETA-FEDMINTLCKAQRI 583

Query: 484 NEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
            EA +L   I + G   P +I+  L +   +AG
Sbjct: 584 KEACKLADGIVDRGREIPGRIRTVLINALRKAG 616



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 128/293 (43%), Gaps = 4/293 (1%)

Query: 289 VPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMS 348
           V  I     L+ + + + +L + +  F  L+  G    +   NS+I ++ N G  +  + 
Sbjct: 145 VHKIECHVSLIELLTFSADLVKIRLVFFELKDRGLLMTESAANSLIKSFGNLGLVEELLW 204

Query: 349 LVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYG 408
           +   M  +GI+ S   Y  L+        +  A ++  +M   +  P   +  ++++ Y 
Sbjct: 205 VWRRMKENGIDPSLYTYNFLVNGLVNSMFIESAEKVFEVMDGGKIVPDTVTYNIMIKGYC 264

Query: 409 QAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPA 468
           +AG   +A   F  M     KPD     ++I A   +   D  L+L LE+E+ G E  P 
Sbjct: 265 KAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQACYSERDFDTCLSLYLEMEERGLEIPPH 324

Query: 469 TYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFL 528
           +Y++++  L + +   EA  +   +++ G      I  +L D Y++ G  ++A++   F 
Sbjct: 325 SYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRL--FE 382

Query: 529 EAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
             K E   PD   +  ++NGL   G L D   +      +G A +     +LI
Sbjct: 383 RMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYASLI 435


>gi|224157081|ref|XP_002337799.1| predicted protein [Populus trichocarpa]
 gi|222869732|gb|EEF06863.1| predicted protein [Populus trichocarpa]
          Length = 367

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 93/182 (51%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E+    +V  Y+ +++   KE  L DA+++  +M E G +PD  T T L+H + + GN+ 
Sbjct: 169 EQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMT 228

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
           +A   F ++     +PD   YN++I  +   G+ +    L D MI+  I  +   Y  L+
Sbjct: 229 KALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILI 288

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
            ++   G V  A ++ ++M  +  +PTL +C  +++ Y ++GD  +A      MI  G  
Sbjct: 289 NAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVA 348

Query: 430 PD 431
           PD
Sbjct: 349 PD 350



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 128/288 (44%), Gaps = 4/288 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+    + +   +A+ I  +M   G+VPD+V+ + L+ ++S+  +LD+A   F  ++
Sbjct: 74  YNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNRHLDQALVYFRDMK 133

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  PD  +Y  ++  Y   G     + + D M+  G       Y  +L    +   + 
Sbjct: 134 KFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLT 193

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++ + M      P   + T L+  + Q G+  +A S F  M +   KPD     ++I
Sbjct: 194 DADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLI 253

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             + K   ++KA  L   +      P   TY +L++    +  ++EA +L   + E G  
Sbjct: 254 DGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIK 313

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIIN 545
           P      ++   Y R+G   KA + LG + AK   + PD   +  +IN
Sbjct: 314 PTLVTCNTVIKGYCRSGDSSKADEFLGRMIAK--GVAPDHISYNTLIN 359



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/298 (21%), Positives = 122/298 (40%), Gaps = 35/298 (11%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI A+ +E  LE+A  I+  M + G+ P + T   +++   K G   RAK     + 
Sbjct: 4   YNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEML 63

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G  PD   YN++               LV+         ++EI+  +LR         
Sbjct: 64  NIGLSPDTTTYNTL---------------LVESCRRDNFSEAKEIFGEMLR--------- 99

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
                      +   P L S + L+  + +    DQA   F  M + G  PD+     ++
Sbjct: 100 -----------QGVVPDLVSFSSLMAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLM 148

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             Y +   + +AL +  E+ + G       Y  +++ L + +++ +A++L  ++ E G  
Sbjct: 149 HGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGAL 208

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQ 557
           P F    +L   + + G   KAL   G +  +  +     +  +I+G    G ++ A 
Sbjct: 209 PDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKAS 266


>gi|297744958|emb|CBI38550.3| unnamed protein product [Vitis vinifera]
          Length = 795

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 108/228 (47%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +S  + + NV  Y+ LIDA+ K  CLEDA  +  +M    +VPD+VT T +++   K+G 
Sbjct: 78  ISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGK 137

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           ++ AK  F  +   G  P++  Y ++I +    G       L   M+  GI     +Y A
Sbjct: 138 VEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTA 197

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    + G    A  +  ++  E   P   + + L++ + + GD ++       M    
Sbjct: 198 LMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKH 257

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
             P+    +S++  Y KK LL++A++++ ++ +    P    Y  L+D
Sbjct: 258 IFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLID 305



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 59/283 (20%), Positives = 124/283 (43%), Gaps = 12/283 (4%)

Query: 251 ESFQTNVRD---------YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM 301
           ESF T +R          ++ +I+A+ KE  L +A ++L +M   G+ P+ +T  +LV  
Sbjct: 421 ESFHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQR 480

Query: 302 YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS 361
              AG +++  +    +   GF P    + +++ A   + +  + + + D ++  G++  
Sbjct: 481 LCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVILHMHDQLVGMGVKLD 540

Query: 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421
              Y  L+ +F + G +R A  +   M  +     + +   L+  Y  +    +A +   
Sbjct: 541 LSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAFAVHS 600

Query: 422 YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ 481
            M+  G  P+      ++       L+ +A  L+ ++++ G  P   TY +LV   G++ 
Sbjct: 601 QMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIG 660

Query: 482 LINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQA 524
            + E  +L  ++   G  P  +    L   +A+    KK  QA
Sbjct: 661 NMKECVKLYCEMITKGFVPKTRTYNVLISCFAKG---KKMSQA 700



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 129/284 (45%), Gaps = 3/284 (1%)

Query: 218 LQPSRIDWINLLDRLREQNTQL-YFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L P R+++ +++D   +   +   F +A+  ++E+S   +V  Y+ LI+   K    E +
Sbjct: 363 LLPDRVNYTSMMDGFFKAGKESDAFNIAQ-EMTEKSSGFDVVAYNVLINGLFKLGKYE-S 420

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
           E     M + G+ PD  T   +++ Y K GNL  A +    ++S+G +P+    N ++  
Sbjct: 421 ESFHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQR 480

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
              AG+ +  M L++ M+  G   +   + A+L + ++         + + +     +  
Sbjct: 481 LCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVILHMHDQLVGMGVKLD 540

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           L +   L+  + + G   +A   F  M+  G   D     ++I  Y   + L KA  +  
Sbjct: 541 LSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAFAVHS 600

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
           ++  +G  P   TY +L+  L   +LI EA  L+ ++ E G  P
Sbjct: 601 QMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVP 644



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/303 (21%), Positives = 130/303 (42%), Gaps = 5/303 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  ++ LID + +   +  A  +L+ M   G  PDIVT   L++ + K G+L  AK+  
Sbjct: 16  SVEHFNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLM 75

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +     +P+   Y ++I AY  +   +  + + D M    +      Y  ++    + 
Sbjct: 76  GEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKS 135

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G V  A  +   M      P   S   L+++  + G+  +A      M+  G   D    
Sbjct: 136 GKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVY 195

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            +++    K  + + A ++   L ++   P   TY+ L+D   +L  +N+ E LL ++ E
Sbjct: 196 TALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEE 255

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
               P   +  S+ D Y + G+  +A+  +   +  +  + P+ F   + G L  G+ + 
Sbjct: 256 KHIFPNVIVYSSIVDGYTKKGLLNEAMDVMR--KMVQRNILPNVF---VYGTLIDGYFKA 310

Query: 556 AQR 558
            QR
Sbjct: 311 DQR 313



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 80/373 (21%), Positives = 150/373 (40%), Gaps = 20/373 (5%)

Query: 218 LQPSRIDWINLLD-----RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC 272
           L+P+ I +  L+D     +  E    +Y +     ++ +S   +V  Y+ +++   K   
Sbjct: 83  LEPNVITYTTLIDAYCKSQCLEDALYMYDE-----MTVKSLVPDVVTYTCIMNGLCKSGK 137

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           +E+A+ + ++M E G+VP+  +   L+    K GN+  A      +   G   D  VY +
Sbjct: 138 VEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTA 197

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           ++     AG       +  +++   +  +   Y AL+    + GDV     +   M  + 
Sbjct: 198 LMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKH 257

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P +   + +V+ Y + G  ++A      M++    P+     ++I  Y K +    AL
Sbjct: 258 IFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIAL 317

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
           +L  E++  G E         V+ L R   + EA++L   +   G  P      S+ D +
Sbjct: 318 DLFKEMKSRGLEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGF 377

Query: 513 ARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572
            +AG E  A      +  K        +  +INGL   G   +++  H  M   G A   
Sbjct: 378 FKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGLFKLG-KYESESFHTGMRQLGLAP-- 434

Query: 573 RLKVALISSQTFN 585
                   S TFN
Sbjct: 435 -------DSATFN 440



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/264 (21%), Positives = 112/264 (42%)

Query: 296 TVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMIT 355
            VL+  Y + G + RA E  E +++ G  PD   YN+++  +   G       L+  +  
Sbjct: 21  NVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISL 80

Query: 356 SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ 415
             +E +   Y  L+ ++ +   +  A  + + M ++   P + + T ++    ++G  ++
Sbjct: 81  VNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVEE 140

Query: 416 ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
           A+S F  M  +G  P+    A++I +  K+  + +A  L   +   G       YT L+D
Sbjct: 141 AKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALMD 200

Query: 476 WLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQM 535
            L +  + N AE +   + E    P      +L D + + G   K    L  +E K    
Sbjct: 201 GLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFP 260

Query: 536 GPDDFERIINGLLAGGFLQDAQRV 559
               +  I++G    G L +A  V
Sbjct: 261 NVIVYSSIVDGYTKKGLLNEAMDV 284



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/200 (21%), Positives = 87/200 (43%)

Query: 358 IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
           I RS E +  L+  + + G++  A ++   M+ E   P + +   L+  + + GD   A+
Sbjct: 13  IRRSVEHFNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAK 72

Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
                +  +  +P+     ++I AY K   L+ AL +  E+      P   TYT +++ L
Sbjct: 73  KLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGL 132

Query: 478 GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP 537
            +   + EA+ +  ++ E+G  P      +L D   + G   +A    G +  +      
Sbjct: 133 CKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDV 192

Query: 538 DDFERIINGLLAGGFLQDAQ 557
             +  +++GL   G   +A+
Sbjct: 193 VVYTALMDGLFKAGMANNAE 212



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 1/103 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E     N   Y  L+  H K   +++  ++  +M   G VP   T  VL+  ++K   
Sbjct: 637 MKERGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAKGKK 696

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMA-YVNAGQPKLGMSL 349
           + +AKE  + ++  G  P+   Y+ +I   Y  + QP+L  SL
Sbjct: 697 MSQAKELMQEMQVRGIPPNSSTYDILICGWYKLSKQPELNKSL 739



 Score = 40.0 bits (92), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 41/196 (20%), Positives = 84/196 (42%), Gaps = 4/196 (2%)

Query: 386 NIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKK 445
           N  +  E + ++E   +L++ Y + G+  +A    + M   G  PD     +++  + K 
Sbjct: 6   NTYQHPEIRRSVEHFNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKI 65

Query: 446 NLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQ 505
             L  A  L+ E+     EP   TYT L+D   + Q + +A  +  +++     P     
Sbjct: 66  GDLFTAKKLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTY 125

Query: 506 VSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFE--RIINGLLAGGFLQDAQRVHGLM 563
             + +   ++G  ++A     F E ++  + P+ F    +I+ L   G + +A  + G M
Sbjct: 126 TCIMNGLCKSGKVEEAKSV--FREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRM 183

Query: 564 EAQGFAASERLKVALI 579
             +G      +  AL+
Sbjct: 184 VVRGIGFDVVVYTALM 199


>gi|356513957|ref|XP_003525674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g40400-like [Glycine max]
          Length = 626

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 157/340 (46%), Gaps = 20/340 (5%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + EE F+ ++  Y+ L++++ K+  LEDA  + K M   G++P+++T TVL++   + G 
Sbjct: 274 MEEEGFEPDLVTYNTLVNSYCKKRRLEDAFYLYKIMYIRGVMPNLITHTVLMNGLCEEGK 333

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A + F  +   G  PD   YN+++  Y   G+ ++  SL+  MI +GI         
Sbjct: 334 VKEAHQLFHQMVHRGIDPDVVSYNTLVSGYCREGKMQMCRSLLHEMIGNGICPDSVTCRL 393

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTL--ESCTLLVEAYGQAGDPDQARSNFDYMIR 425
           ++  FA+ G +  A  +  ++ ++ F+  +  +    L+ A    G P  ARS   +++R
Sbjct: 394 IVEGFARDGKLLSA--LNTVVELKRFRIKIPEDLYDYLIVALCIEGRPFAARS---FLLR 448

Query: 426 L---GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
           +   G+ P       ++ +  K N +++AL L  E+ K         Y  ++  L R+  
Sbjct: 449 ISQDGYMPKINTYNKLVESLCKFNNVEEALILKSEMVKRSMILNLVAYRAVISCLCRVNR 508

Query: 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFER 542
             EAE LL ++   G  P  +I  +L + Y       KA+  L F   + +    + +  
Sbjct: 509 TLEAEGLLEEMVSSGILPDVEISRALINGYCEENKVDKAVSLLKFFANEFQVYDTESYNA 568

Query: 543 IINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQ 582
           ++          D   V  L+E Q     + LKV  +S++
Sbjct: 569 VVK------VFCDVGNVAELLELQ----DKLLKVGYVSNR 598



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 109/264 (41%), Gaps = 4/264 (1%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E  F  NV   + L+   ++ N +     + ++M   GI  +  T  ++ H+  K G+ D
Sbjct: 206 EACFIPNVIACNCLLSGLSRFNYIGQCWAVYEEMGRLGIHRNAYTFNIMTHVLCKDGDTD 265

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
           +     + +   GF+PD   YN+++ +Y    + +    L  +M   G+  +   +  L+
Sbjct: 266 KVTRFLDKMEEEGFEPDLVTYNTLVNSYCKKRRLEDAFYLYKIMYIRGVMPNLITHTVLM 325

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               + G V+ A Q+ + M      P + S   LV  Y + G     RS    MI  G  
Sbjct: 326 NGLCEEGKVKEAHQLFHQMVHRGIDPDVVSYNTLVSGYCREGKMQMCRSLLHEMIGNGIC 385

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD      ++  + +   L  ALN ++EL++   +     Y  L+  L        A   
Sbjct: 386 PDSVTCRLIVEGFARDGKLLSALNTVVELKRFRIKIPEDLYDYLIVALCIEGRPFAARSF 445

Query: 490 LGKISELGEAPPF----KIQVSLC 509
           L +IS+ G  P      K+  SLC
Sbjct: 446 LLRISQDGYMPKINTYNKLVESLC 469



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 61/288 (21%), Positives = 112/288 (38%), Gaps = 11/288 (3%)

Query: 245 ELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK 304
            LV   E    N   +  LI A+ K   +E      ++  E   +P+++    L+   S+
Sbjct: 166 NLVECTEDCNWNPAIFDMLIKAYVKAGMVEKGLATFRRNIEACFIPNVIACNCLLSGLSR 225

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
              + +    +E +   G   +   +N M       G        +D M   G E     
Sbjct: 226 FNYIGQCWAVYEEMGRLGIHRNAYTFNIMTHVLCKDGDTDKVTRFLDKMEEEGFEPDLVT 285

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
           Y  L+ S+ +   +  A  +  IM I    P L + T+L+    + G   +A   F  M+
Sbjct: 286 YNTLVNSYCKKRRLEDAFYLYKIMYIRGVMPNLITHTVLMNGLCEEGKVKEAHQLFHQMV 345

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
             G  PD     ++++ Y ++  +    +LL E+  +G  P   T  ++V+   R     
Sbjct: 346 HRGIDPDVVSYNTLVSGYCREGKMQMCRSLLHEMIGNGICPDSVTCRLIVEGFAR----- 400

Query: 485 EAEQLLGKISELGEAPPFKIQVSLCDMY----ARAGIEKKALQALGFL 528
              +LL  ++ + E   F+I++   D+Y        IE +   A  FL
Sbjct: 401 -DGKLLSALNTVVELKRFRIKIPE-DLYDYLIVALCIEGRPFAARSFL 446



 Score = 41.2 bits (95), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 27/133 (20%), Positives = 61/133 (45%)

Query: 246 LVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKA 305
           L +S++ +   +  Y+KL+++  K N +E+A  +  +M +  ++ ++V    ++    + 
Sbjct: 447 LRISQDGYMPKINTYNKLVESLCKFNNVEEALILKSEMVKRSMILNLVAYRAVISCLCRV 506

Query: 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
                A+   E + S G  PD ++  ++I  Y    +    +SL+            E Y
Sbjct: 507 NRTLEAEGLLEEMVSSGILPDVEISRALINGYCEENKVDKAVSLLKFFANEFQVYDTESY 566

Query: 366 LALLRSFAQCGDV 378
            A+++ F   G+V
Sbjct: 567 NAVVKVFCDVGNV 579


>gi|357517409|ref|XP_003628993.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523015|gb|AET03469.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 819

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 115/241 (47%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI    K   +E+A ++ +KM + G  PD  T   L+   +  G +D         +
Sbjct: 525 YNTLIFGCCKSGKIEEAFKLKEKMMKQGFKPDTYTYNFLMKGLADKGKMDDVGRVLHEAK 584

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
            HG  P+   Y  M+  Y NA +    +SL + ++ + +E S  +Y  L+ + ++ G+  
Sbjct: 585 DHGVVPNIYTYALMLEGYCNADRIDNAVSLFNKLVYNKVELSYVVYNILIAAHSKAGNFT 644

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++ + MR     PT+ + + ++         ++A+  F+ M   G  P+  C  ++I
Sbjct: 645 EAFKLRDAMRSSNIHPTIFTYSSIIHGMCCNDLVEEAKGIFEEMRNEGLMPNVFCYTALI 704

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             Y K   +D+  ++L E+  +  +P   TYT+++D   ++    EA +LL ++   G +
Sbjct: 705 GGYCKLGQMDQIESILQEMTSNCIQPNKITYTIMIDGYCKMGNTKEATKLLNEMIANGIS 764

Query: 500 P 500
           P
Sbjct: 765 P 765



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 106/234 (45%), Gaps = 3/234 (1%)

Query: 241 FKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
           FK+ E ++ ++ F+ +   Y+ L+   A +  ++D  R+L +  ++G+VP+I T  +++ 
Sbjct: 542 FKLKEKMM-KQGFKPDTYTYNFLMKGLADKGKMDDVGRVLHEAKDHGVVPNIYTYALMLE 600

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
            Y  A  +D A   F  L  +  +    VYN +I A+  AG       L D M +S I  
Sbjct: 601 GYCNADRIDNAVSLFNKLVYNKVELSYVVYNILIAAHSKAGNFTEAFKLRDAMRSSNIHP 660

Query: 361 SEEIYLALLRSFAQCGD-VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
           +   Y +++     C D V  A  I   MR E   P +   T L+  Y + G  DQ  S 
Sbjct: 661 TIFTYSSIIHGMC-CNDLVEEAKGIFEEMRNEGLMPNVFCYTALIGGYCKLGQMDQIESI 719

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVL 473
              M     +P+      MI  Y K     +A  LL E+  +G  P   TYTVL
Sbjct: 720 LQEMTSNCIQPNKITYTIMIDGYCKMGNTKEATKLLNEMIANGISPDTVTYTVL 773



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 90/202 (44%), Gaps = 24/202 (11%)

Query: 197 KILSLEKEEDPSPLLAEWKELLQ----PSRID-WINLLDRLREQNTQLYFKVAELVLSEE 251
           ++L   K+    P +  +  +L+      RID  ++L ++L     +L + V  ++++  
Sbjct: 578 RVLHEAKDHGVVPNIYTYALMLEGYCNADRIDNAVSLFNKLVYNKVELSYVVYNILIAAH 637

Query: 252 SFQTN------VRD-------------YSKLIDAHAKENCLEDAERILKKMNENGIVPDI 292
           S   N      +RD             YS +I      + +E+A+ I ++M   G++P++
Sbjct: 638 SKAGNFTEAFKLRDAMRSSNIHPTIFTYSSIIHGMCCNDLVEEAKGIFEEMRNEGLMPNV 697

Query: 293 VTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDM 352
              T L+  Y K G +D+ +   + + S+  QP+K  Y  MI  Y   G  K    L++ 
Sbjct: 698 FCYTALIGGYCKLGQMDQIESILQEMTSNCIQPNKITYTIMIDGYCKMGNTKEATKLLNE 757

Query: 353 MITSGIERSEEIYLALLRSFAQ 374
           MI +GI      Y  L + + +
Sbjct: 758 MIANGISPDTVTYTVLQKGYCK 779



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 10/166 (6%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ LID   K   LE+A     +M EN + P +VT  +LV+   K    D A    
Sbjct: 275 NVVTYNNLIDGLCKSGRLEEALMFKGRMVENKVNPSLVTYGILVNGLVKFEKFDEANSVL 334

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             + S GF P++ V+N++I  Y   G     + + D M   G++ +   +  LL+ F + 
Sbjct: 335 VEMYSKGFSPNEFVFNALIDGYSRKGNMDDALRVRDDMTLKGLKPNAVTHNTLLQGFCRT 394

Query: 376 GDVRGAGQI-----TNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
             +  A Q+     +N++ + E     ++C+ ++    ++   D A
Sbjct: 395 NQMEQAEQVLEYLLSNVLSVNE-----DACSYVLHLLCKSSKFDSA 435



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/228 (21%), Positives = 94/228 (41%), Gaps = 35/228 (15%)

Query: 263 LIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG 322
           L+ +  K N L  + R+   M   G++ D+ T    ++ Y K G +D A   F  +   G
Sbjct: 212 LMSSLVKSNELHKSFRVFDAMCRGGVLIDVYTYATAINAYCKGGKIDEAVGLFLKMGEGG 271

Query: 323 FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAG 382
             P+   YN++I     +G+ +  +     M+ + +  S   Y  L              
Sbjct: 272 VLPNVVTYNNLIDGLCKSGRLEEALMFKGRMVENKVNPSLVTYGIL-------------- 317

Query: 383 QITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAY 442
            +  +++ E+F    E+ ++LVE Y +   P++   N                 ++I  Y
Sbjct: 318 -VNGLVKFEKFD---EANSVLVEMYSKGFSPNEFVFN-----------------ALIDGY 356

Query: 443 GKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
            +K  +D AL +  ++   G +P   T+  L+    R   + +AEQ+L
Sbjct: 357 SRKGNMDDALRVRDDMTLKGLKPNAVTHNTLLQGFCRTNQMEQAEQVL 404



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/297 (19%), Positives = 119/297 (40%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           LE  +   +  ++ G+  +  TS  L++   + GN++      + +   G   D   YN+
Sbjct: 468 LEAIDLWFRLADKKGLAANTTTSNALLYGLCERGNMEEVFPVCKEMVERGLVLDGISYNT 527

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I     +G+ +    L + M+  G +     Y  L++  A  G +   G++ +  +   
Sbjct: 528 LIFGCCKSGKIEEAFKLKEKMMKQGFKPDTYTYNFLMKGLADKGKMDDVGRVLHEAKDHG 587

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P + +  L++E Y  A   D A S F+ ++    +        +IAA+ K     +A 
Sbjct: 588 VVPNIYTYALMLEGYCNADRIDNAVSLFNKLVYNKVELSYVVYNILIAAHSKAGNFTEAF 647

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
            L   +      P   TY+ ++  +    L+ EA+ +  ++   G  P      +L   Y
Sbjct: 648 KLRDAMRSSNIHPTIFTYSSIIHGMCCNDLVEEAKGIFEEMRNEGLMPNVFCYTALIGGY 707

Query: 513 ARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
            + G   +    L  + +   Q     +  +I+G    G  ++A ++   M A G +
Sbjct: 708 CKLGQMDQIESILQEMTSNCIQPNKITYTIMIDGYCKMGNTKEATKLLNEMIANGIS 764



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 87/199 (43%), Gaps = 10/199 (5%)

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P+L+SC  L+ +  ++ +  ++   FD M R G   D    A+ I AY K   +D+A+ L
Sbjct: 204 PSLKSCNFLMSSLVKSNELHKSFRVFDAMCRGGVLIDVYTYATAINAYCKGGKIDEAVGL 263

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
            L++ + G  P   TY  L+D L +   + EA    G++ E    P       L +   +
Sbjct: 264 FLKMGEGGVLPNVVTYNNLIDGLCKSGRLEEALMFKGRMVENKVNPSLVTYGILVNGLVK 323

Query: 515 AGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAG----GFLQDAQRVHGLMEAQGFAA 570
                +A   L  +E   +   P++F  + N L+ G    G + DA RV   M  +G   
Sbjct: 324 FEKFDEANSVL--VEMYSKGFSPNEF--VFNALIDGYSRKGNMDDALRVRDDMTLKGLKP 379

Query: 571 SERLKVALISSQTFNRQRQ 589
           +      L+  Q F R  Q
Sbjct: 380 NAVTHNTLL--QGFCRTNQ 396



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/224 (19%), Positives = 103/224 (45%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+  I+A+ K   +++A  +  KM E G++P++VT   L+    K+G L+ A    
Sbjct: 240 DVYTYATAINAYCKGGKIDEAVGLFLKMGEGGVLPNVVTYNNLIDGLCKSGRLEEALMFK 299

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +  +   P    Y  ++   V   +     S++  M + G   +E ++ AL+  +++ 
Sbjct: 300 GRMVENKVNPSLVTYGILVNGLVKFEKFDEANSVLVEMYSKGFSPNEFVFNALIDGYSRK 359

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G++  A ++ + M ++  +P   +   L++ + +    +QA    +Y++      ++   
Sbjct: 360 GNMDDALRVRDDMTLKGLKPNAVTHNTLLQGFCRTNQMEQAEQVLEYLLSNVLSVNEDAC 419

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
           + ++    K +  D AL ++  L     +   +  T+LV  L +
Sbjct: 420 SYVLHLLCKSSKFDSALKIVKALLLRNIKVNDSLLTLLVCGLCK 463


>gi|255575351|ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531974|gb|EEF33786.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 817

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 128/302 (42%), Gaps = 4/302 (1%)

Query: 249 SEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNL 308
           +E+  + N    S L++   K+  +E AE ILKK  ENG+V D V     V+ Y + G++
Sbjct: 343 TEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDM 402

Query: 309 DRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLAL 368
           ++A    E + S G +P+   +NS+I  + +  +       V  M   G+  S E Y  L
Sbjct: 403 NKAILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTL 462

Query: 369 LRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH 428
           +  + +        QI   M     +P + S   L+    + G   +A      MI  G 
Sbjct: 463 IDGYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGV 522

Query: 429 KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQ 488
            P+ +    +I        +  AL    E+ +    P   TY VL+D L +   + EAE 
Sbjct: 523 LPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAED 582

Query: 489 LLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLL 548
            L +I+  G +P      SL   YA AG      + LG  E  K  +G     R  + L+
Sbjct: 583 FLTQITSSGHSPDVITYNSLISGYANAG---NVSKCLGLYETMK-NLGIKPTVRTYHPLI 638

Query: 549 AG 550
           +G
Sbjct: 639 SG 640



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 87/369 (23%), Positives = 160/369 (43%), Gaps = 18/369 (4%)

Query: 226 INLLDRLREQNTQL--YFKVAEL--------VLSEESFQTNVRDYSKLIDAHAKENCLED 275
           INL+  +   NT +  Y KV EL         + E+S   N+  ++ L+    K   +++
Sbjct: 240 INLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNIITFNSLLSGLCKMRKMKE 299

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A  +LK+M  NG +PD  T ++L     +  + + A E +E     G + +    + ++ 
Sbjct: 300 ARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMELYEQATEKGIRINNYTGSILLN 359

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF-- 393
                G+ +    ++     +G+   E IY   +  + + GD+  A  I  I R+E F  
Sbjct: 360 GLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDMNKA--ILTIERMESFGL 417

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
           +P   +   L++ +    + D+A      M   G  P      ++I  YGK    D+   
Sbjct: 418 RPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCFQ 477

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
           +L ++E+ G +P   +Y  L++ L +   I EAE +L  +   G  P  ++   L D   
Sbjct: 478 ILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLIDGSC 537

Query: 514 RAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAAS 571
             G  K AL+   F E  + ++ P    +  +I+GL   G L +A+     + + G +  
Sbjct: 538 MVGKVKDALRF--FDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHSPD 595

Query: 572 ERLKVALIS 580
                +LIS
Sbjct: 596 VITYNSLIS 604



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/324 (22%), Positives = 137/324 (42%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ LI    +E  + DAE++  +M    +V  IVT   L+  Y K G LD A +  
Sbjct: 210 NVFIYNVLIGGLCREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMR 269

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E ++     P+   +NS++       + K   SL+  M  +G       Y  L     +C
Sbjct: 270 ERMKEKSVAPNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRC 329

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
            D  GA ++      +  +    + ++L+    + G  ++A          G   D+   
Sbjct: 330 DDGNGAMELYEQATEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIY 389

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            + +  Y +   ++KA+  +  +E  G  P   T+  L+D    ++ +++AE+ + K++E
Sbjct: 390 NTFVNGYCRIGDMNKAILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAE 449

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
            G  P  +   +L D Y +     +  Q L  +E    +     +  +IN L   G + +
Sbjct: 450 KGVTPSVETYNTLIDGYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKILE 509

Query: 556 AQRVHGLMEAQGFAASERLKVALI 579
           A+ V   M  +G   + ++   LI
Sbjct: 510 AEIVLRDMICRGVLPNAQVYNMLI 533



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 82/371 (22%), Positives = 151/371 (40%), Gaps = 57/371 (15%)

Query: 187 ITGKCKL--ITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVA 244
           + G C++  +   IL++E+ E            L+P+ I + +L+D+  +       K  
Sbjct: 393 VNGYCRIGDMNKAILTIERMESFG---------LRPNSITFNSLIDKFCDMKEM--DKAE 441

Query: 245 ELV--LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMY 302
           E V  ++E+    +V  Y+ LID + K    +   +IL++M E G+ P++V+   L++  
Sbjct: 442 EWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCL 501

Query: 303 SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE 362
            K G +  A+     +   G  P+ +VYN +I      G+ K  +   D M+ S      
Sbjct: 502 CKDGKILEAEIVLRDMICRGVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRS------ 555

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
                                        E  PTL +  +L++   + G   +A      
Sbjct: 556 -----------------------------EISPTLVTYNVLIDGLCKKGKLTEAEDFLTQ 586

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
           +   GH PD     S+I+ Y     + K L L   ++  G +P   TY  L+    + + 
Sbjct: 587 ITSSGHSPDVITYNSLISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHPLISGCSK-EG 645

Query: 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ-ALGFLEAKKEQMGPDDFE 541
           I   E+L  ++ ++   P   +  ++   YA  G  +KA     G L+   + + PD  +
Sbjct: 646 IELVEKLYNEMLQMNLLPDRVVYNAMIHCYAEIGNTQKAYSLHQGMLD---QGIHPD--K 700

Query: 542 RIINGLLAGGF 552
              N L+ G F
Sbjct: 701 MTYNSLILGHF 711



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 85/206 (41%), Gaps = 34/206 (16%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LID   K+  L +AE  L ++  +G  PD++T   L+  Y+ AGN+ +    +E+++
Sbjct: 564 YNVLIDGLCKKGKLTEAEDFLTQITSSGHSPDVITYNSLISGYANAGNVSKCLGLYETMK 623

Query: 320 SHGFQP----------------------------------DKKVYNSMIMAYVNAGQPKL 345
           + G +P                                  D+ VYN+MI  Y   G  + 
Sbjct: 624 NLGIKPTVRTYHPLISGCSKEGIELVEKLYNEMLQMNLLPDRVVYNAMIHCYAEIGNTQK 683

Query: 346 GMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVE 405
             SL   M+  GI   +  Y +L+    + G +     + N M+ +E  P  ++  +LV+
Sbjct: 684 AYSLHQGMLDQGIHPDKMTYNSLILGHFREGKLSNIKDLVNNMKAKELAPKADTYDILVK 743

Query: 406 AYGQAGDPDQARSNFDYMIRLGHKPD 431
            +    D   A   +  M+     P+
Sbjct: 744 GHCDLKDFSGAYVWYREMVENNFLPN 769



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 66/155 (42%), Gaps = 1/155 (0%)

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           VR Y  LI   +KE  +E  E++  +M +  ++PD V    ++H Y++ GN  +A    +
Sbjct: 631 VRTYHPLISGCSKEG-IELVEKLYNEMLQMNLLPDRVVYNAMIHCYAEIGNTQKAYSLHQ 689

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
            +   G  PDK  YNS+I+ +   G+      LV+ M    +    + Y  L++      
Sbjct: 690 GMLDQGIHPDKMTYNSLILGHFREGKLSNIKDLVNNMKAKELAPKADTYDILVKGHCDLK 749

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAG 411
           D  GA      M    F P    C  L     Q G
Sbjct: 750 DFSGAYVWYREMVENNFLPNASICNELTAGLEQEG 784



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 73/346 (21%), Positives = 140/346 (40%), Gaps = 35/346 (10%)

Query: 187 ITGKCKLITDKILSLEKEEDPSPLLAEWKELLQPS------------------RIDWINL 228
           +  + +L++   +S     +P P+   +  +  P                   R + +N 
Sbjct: 1   MANRIRLLSKVTISTRNNPNPFPVFPSFSTIPTPEESEQTQNTLSNNSSKDQERYEQVNK 60

Query: 229 LDRLREQNTQ--LYFKVAELVLSEESFQTNVRDYS---------------KLIDAHAKEN 271
           L  L +QN     Y     L+L++ +F +    +S                L+    K  
Sbjct: 61  LQILLQQNCNEAAYSLAKSLILTKSTFSSPSDLFSCFSACSIPLRITLSDMLLSVCCKSK 120

Query: 272 CLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYN 331
            L +A  + + M  +G +P +V+ ++L           +  + F  + + GF+ D  +Y 
Sbjct: 121 MLREAVELYEFMRRDGKLPSLVSLSLLFSCLVNEKQFVKVVDLFMEIENSGFRTDTFMYA 180

Query: 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391
             I A V     K+GM  +D M   G+  +  IY  L+    +   +R A ++ + M   
Sbjct: 181 KAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLIGGLCREKRIRDAEKMFDEMCNI 240

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
               ++ +   L++ Y + G+ D A    + M      P+     S+++   K   + +A
Sbjct: 241 NLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNIITFNSLLSGLCKMRKMKEA 300

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
            +LL E+E +GF P   TY++L D L R    N A +L  + +E G
Sbjct: 301 RSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMELYEQATEKG 346


>gi|125575277|gb|EAZ16561.1| hypothetical protein OsJ_32034 [Oryza sativa Japonica Group]
          Length = 526

 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 106/224 (47%), Gaps = 7/224 (3%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  YS +I+   KE  L+       KM +  I P++VT   ++    KA  +D+A E  
Sbjct: 87  DVVSYSTVINGFFKEGDLD-------KMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVL 139

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
            ++   G  PD   YNS++  + ++GQPK  +  +  M + G+E     Y +L+    + 
Sbjct: 140 TTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKN 199

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G    A +I + M     +P + +   L++ Y   G   +     D M+R G  P+    
Sbjct: 200 GRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVF 259

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
           + ++ AY K+  +++A+ +  ++ + G  P   TY  ++D L +
Sbjct: 260 SILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCK 303



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 75/332 (22%), Positives = 147/332 (44%), Gaps = 13/332 (3%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENG--IVPDIVTSTVLVHMYSKAGNLDRAKE 313
           +V  Y+ L++    EN  ++A  +L  M ++G    PD+V+ + +++ + K G+LD+   
Sbjct: 50  DVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDK--- 106

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
               +      P+   YNS+I A   A      M ++  M+ SG+      Y +++  F 
Sbjct: 107 ----MLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFC 162

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
             G  + A      MR +  +P + +   L++   + G   +AR  FD M + G KPD  
Sbjct: 163 SSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDIT 222

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
              +++  Y  K  L +   LL  + ++G  P    +++LV    + + + EA  +  K+
Sbjct: 223 TYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKM 282

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGG 551
            + G  P      ++ D+  ++G  + A+  L F +   E + PD   +  +I+ L    
Sbjct: 283 RQQGLNPNAVTYGTVIDVLCKSGRVEDAM--LYFEQMIDEGLRPDSIVYNSLIHSLCIFD 340

Query: 552 FLQDAQRVHGLMEAQGFAASERLKVALISSQT 583
             + A+ +   M  +G   S     ++I S  
Sbjct: 341 KWEKAEELFLEMLDRGICLSTIFFNSIIDSHC 372



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 110/241 (45%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ ++         ++A   LKKM  +G+ PD+VT   L+    K G    A++ F+S+ 
Sbjct: 154 YNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMT 213

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +PD   Y +++  Y   G       L+D+M+ +GI  +  ++  L+ ++A+   V 
Sbjct: 214 KRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVE 273

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  + + MR +   P   +   +++   ++G  + A   F+ MI  G +PD     S+I
Sbjct: 274 EAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLI 333

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            +    +  +KA  L LE+   G       +  ++D   +   + E+ +L   +  +G  
Sbjct: 334 HSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVK 393

Query: 500 P 500
           P
Sbjct: 394 P 394



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 120/278 (43%), Gaps = 1/278 (0%)

Query: 240 YFKVAEL-VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVL 298
           +FK  +L  + ++    NV  Y+ +I A  K   ++ A  +L  M ++G++PD +T   +
Sbjct: 98  FFKEGDLDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSI 157

Query: 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
           VH +  +G    A    + +RS G +PD   YNS++      G+      + D M   G+
Sbjct: 158 VHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGL 217

Query: 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418
           +     Y  LL+ +A  G +     + ++M      P     ++LV AY +    ++A  
Sbjct: 218 KPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAML 277

Query: 419 NFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLG 478
            F  M + G  P+     ++I    K   ++ A+    ++  +G  P    Y  L+  L 
Sbjct: 278 VFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLC 337

Query: 479 RLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
                 +AE+L  ++ + G         S+ D + + G
Sbjct: 338 IFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEG 375



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 57/273 (20%), Positives = 118/273 (43%), Gaps = 10/273 (3%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           ++P  + + +L+D L +       +     +++   + ++  Y  L+  +A +  L +  
Sbjct: 182 VEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMH 241

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
            +L  M  NGI P+    ++LV  Y+K   ++ A   F  +R  G  P+   Y ++I   
Sbjct: 242 GLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVL 301

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
             +G+ +  M   + MI  G+     +Y +L+ S         A ++   M       + 
Sbjct: 302 CKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLST 361

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
                +++++ + G   ++   FD M+R+G KPD       I   G+    D+A +L + 
Sbjct: 362 IFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPD-------IITLGRN---DEAKDLFVA 411

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
              +G  P   TY ++ + +    L+ E +QL 
Sbjct: 412 FSSNGLVPNYWTYRLMAENIIGQGLLEELDQLF 444



 Score = 40.0 bits (92), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 12/142 (8%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++ +ID+H KE  + ++ ++   M   G+ PDI+T           G  D AK+ F +  
Sbjct: 364 FNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDIIT----------LGRNDEAKDLFVAFS 413

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           S+G  P+   Y  M    +  G  +    L   M  +G      +   ++R   Q G++ 
Sbjct: 414 SNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEIT 473

Query: 380 GAGQITNIMRIEEFQPTLESCT 401
            AG  T +  I+E   +LE+ T
Sbjct: 474 RAG--TYLSMIDEKHFSLEAST 493


>gi|125556718|gb|EAZ02324.1| hypothetical protein OsI_24426 [Oryza sativa Indica Group]
 gi|125598467|gb|EAZ38247.1| hypothetical protein OsJ_22623 [Oryza sativa Japonica Group]
          Length = 478

 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 111/248 (44%), Gaps = 3/248 (1%)

Query: 229 LDRLREQNTQLYFKVAELVL--SEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNEN 286
           L RL   N  ++ K  +L++   E   + +V+ Y+ LID   K   L DA ++  KM   
Sbjct: 197 LVRLYRDNG-MWKKATDLIMEMQELGVELDVKIYNGLIDTFGKYGQLADARKVFDKMCAE 255

Query: 287 GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLG 346
           G+ PDI T   L+  + + GN  RA   F +++  G  PD K++ ++I      G+    
Sbjct: 256 GVKPDITTWNSLIRWHCRVGNTKRALRFFAAMQEEGMYPDPKIFVTIISRLGEQGKWDEI 315

Query: 347 MSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA 406
             L   M   G++ S  +Y  L+  + Q G  R A      ++ E  Q +     +L  A
Sbjct: 316 KKLFHGMRNRGLKESGAVYAVLVDIYGQYGHFRDAHDCVAALKAENLQLSPSIFCVLANA 375

Query: 407 YGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG 466
           Y Q G  +Q  +    M   G +P+      +I A+G      +AL +L  ++  G  P 
Sbjct: 376 YAQQGLCEQTVNVLQLMEAEGIEPNLVMLNLLINAFGTAGRHLEALAVLQHIKDSGMSPD 435

Query: 467 PATYTVLV 474
             TYT L+
Sbjct: 436 VVTYTTLM 443



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 136/344 (39%), Gaps = 36/344 (10%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y + I  HA  + L  + R+L  M   G+ P       L+   ++AG    A+     +R
Sbjct: 55  YDRGIQHHAGSD-LASSLRLLADMQAAGLRPSGAAYARLIRALARAGRTLEAEALLLEMR 113

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG--- 376
             G +PD   YN+++   ++    +L   L+  M   G+ R+   Y+ LL ++A+ G   
Sbjct: 114 RLGLRPDAAHYNALLEGLLSTAHLRLADRLLLQMADDGVARNRRTYMLLLNAYARAGRLE 173

Query: 377 ----------------DVRGAGQITN--------------IMRIEEFQPTLESCTL--LV 404
                           D  G   +                IM ++E    L+      L+
Sbjct: 174 DSWWVLGEMKRRGIRLDTAGYSTLVRLYRDNGMWKKATDLIMEMQELGVELDVKIYNGLI 233

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
           + +G+ G    AR  FD M   G KPD     S+I  + +     +AL     ++++G  
Sbjct: 234 DTFGKYGQLADARKVFDKMCAEGVKPDITTWNSLIRWHCRVGNTKRALRFFAAMQEEGMY 293

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQA 524
           P P  +  ++  LG     +E ++L   +   G      +   L D+Y + G  + A   
Sbjct: 294 PDPKIFVTIISRLGEQGKWDEIKKLFHGMRNRGLKESGAVYAVLVDIYGQYGHFRDAHDC 353

Query: 525 LGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
           +  L+A+  Q+ P  F  + N     G  +    V  LMEA+G 
Sbjct: 354 VAALKAENLQLSPSIFCVLANAYAQQGLCEQTVNVLQLMEAEGI 397



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/315 (22%), Positives = 142/315 (45%), Gaps = 4/315 (1%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           L+PS   +  L+  L      L  +   L +     + +   Y+ L++       L  A+
Sbjct: 82  LRPSGAAYARLIRALARAGRTLEAEALLLEMRRLGLRPDAAHYNALLEGLLSTAHLRLAD 141

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
           R+L +M ++G+  +  T  +L++ Y++AG L+ +      ++  G + D   Y++++  Y
Sbjct: 142 RLLLQMADDGVARNRRTYMLLLNAYARAGRLEDSWWVLGEMKRRGIRLDTAGYSTLVRLY 201

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
            + G  K    L+  M   G+E   +IY  L+ +F + G +  A ++ + M  E  +P +
Sbjct: 202 RDNGMWKKATDLIMEMQELGVELDVKIYNGLIDTFGKYGQLADARKVFDKMCAEGVKPDI 261

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
            +   L+  + + G+  +A   F  M   G  PD +   ++I+  G++   D+   L   
Sbjct: 262 TTWNSLIRWHCRVGNTKRALRFFAAMQEEGMYPDPKIFVTIISRLGEQGKWDEIKKLFHG 321

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG--KISELGEAPPFKIQVSLCDMYARA 515
           +   G +   A Y VLVD  G+     +A   +   K   L  +P   I   L + YA+ 
Sbjct: 322 MRNRGLKESGAVYAVLVDIYGQYGHFRDAHDCVAALKAENLQLSP--SIFCVLANAYAQQ 379

Query: 516 GIEKKALQALGFLEA 530
           G+ ++ +  L  +EA
Sbjct: 380 GLCEQTVNVLQLMEA 394



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 128/294 (43%), Gaps = 4/294 (1%)

Query: 246 LVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKA 305
           L ++++    N R Y  L++A+A+   LED+  +L +M   GI  D    + LV +Y   
Sbjct: 145 LQMADDGVARNRRTYMLLLNAYARAGRLEDSWWVLGEMKRRGIRLDTAGYSTLVRLYRDN 204

Query: 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
           G   +A +    ++  G + D K+YN +I  +   GQ      + D M   G++     +
Sbjct: 205 GMWKKATDLIMEMQELGVELDVKIYNGLIDTFGKYGQLADARKVFDKMCAEGVKPDITTW 264

Query: 366 LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
            +L+R   + G+ + A +    M+ E   P  +    ++   G+ G  D+ +  F  M  
Sbjct: 265 NSLIRWHCRVGNTKRALRFFAAMQEEGMYPDPKIFVTIISRLGEQGKWDEIKKLFHGMRN 324

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
            G K      A ++  YG+      A + +  L+ +  +  P+ + VL +   +  L  +
Sbjct: 325 RGLKESGAVYAVLVDIYGQYGHFRDAHDCVAALKAENLQLSPSIFCVLANAYAQQGLCEQ 384

Query: 486 AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ-MGPD 538
              +L  +   G  P   +   L + +  AG   + L+AL  L+  K+  M PD
Sbjct: 385 TVNVLQLMEAEGIEPNLVMLNLLINAFGTAG---RHLEALAVLQHIKDSGMSPD 435



 Score = 42.7 bits (99), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 44/225 (19%), Positives = 96/225 (42%), Gaps = 6/225 (2%)

Query: 216 ELLQPSRIDWINLLD-RLREQNTQ--LYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC 272
           E ++P    W +L+    R  NT+  L F  A   + EE    + + +  +I    ++  
Sbjct: 255 EGVKPDITTWNSLIRWHCRVGNTKRALRFFAA---MQEEGMYPDPKIFVTIISRLGEQGK 311

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
            ++ +++   M   G+        VLV +Y + G+   A +   +L++   Q    ++  
Sbjct: 312 WDEIKKLFHGMRNRGLKESGAVYAVLVDIYGQYGHFRDAHDCVAALKAENLQLSPSIFCV 371

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +  AY   G  +  ++++ +M   GIE +  +   L+ +F   G    A  +   ++   
Sbjct: 372 LANAYAQQGLCEQTVNVLQLMEAEGIEPNLVMLNLLINAFGTAGRHLEALAVLQHIKDSG 431

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
             P + + T L++A+ +A   ++A   F Y +   +     C+ S
Sbjct: 432 MSPDVVTYTTLMKAFMRAKKFEKACPLFFYSLAFSNLNIMDCSKS 476


>gi|449519270|ref|XP_004166658.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g19440, chloroplastic-like [Cucumis sativus]
          Length = 799

 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 117/250 (46%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +++   Q ++  Y+ L+        L+DA ++  +   +G++ +I T  +++  Y KA  
Sbjct: 526 MTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANR 585

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           ++  +  F  L S   + +  VYN +I A+   G     + L++ M + GI  +   Y +
Sbjct: 586 IEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSS 645

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+      G V  A  + + MR E F P +   T L+  Y + G  D A S +  MI   
Sbjct: 646 LIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFN 705

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P+      MI  Y K   ++KA NLL+++++ G  P   TY VL +   +   ++ A 
Sbjct: 706 IHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAF 765

Query: 488 QLLGKISELG 497
           ++  +++  G
Sbjct: 766 KVCDQMATEG 775



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 117/256 (45%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI     E  +E   R+ ++M + GI PDI T   L+      G LD A + ++  +
Sbjct: 503 YNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFK 562

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G   +   Y  M+  Y  A + +   +L + +++  +E +  +Y  ++++  Q G+V 
Sbjct: 563 ASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVA 622

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A Q+   M+ +   P   + + L+      G  + A+   D M + G  P+  C  ++I
Sbjct: 623 AALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALI 682

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             Y K   +D A +  LE+      P   TYTV++D   +L  + +A  LL K+ E G  
Sbjct: 683 GGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIV 742

Query: 500 PPFKIQVSLCDMYARA 515
           P       L + + +A
Sbjct: 743 PDVVTYNVLTNGFCKA 758



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 68/309 (22%), Positives = 130/309 (42%), Gaps = 4/309 (1%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           L +A RI+K+M E G+  D +T   L+  +   G ++      E +   G QPD   YN 
Sbjct: 481 LPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNF 540

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           ++    N G+    + L D    SG+  +   Y  ++  + +   +     + N +  ++
Sbjct: 541 LLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKK 600

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
            +       ++++A+ Q G+   A    + M   G  P+    +S+I       L++ A 
Sbjct: 601 MELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAK 660

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
           +L+ E+ K+GF P    YT L+    +L  ++ AE    ++      P       + D Y
Sbjct: 661 HLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGY 720

Query: 513 ARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAA 570
            + G  +KA   L  ++ K+  + PD   +  + NG      + +A +V   M  +G   
Sbjct: 721 CKLGNMEKANNLL--IKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPV 778

Query: 571 SERLKVALI 579
            E     L+
Sbjct: 779 DEITYTTLV 787



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 105/269 (39%), Gaps = 16/269 (5%)

Query: 222 RIDWINLLDRL----REQNTQLYFKVAELVL-------SEESFQTNVRDYSKLIDAHAKE 270
           R +W    D L      Q   L F  A  V        +  S +T     S L+ A+  E
Sbjct: 144 RFEWTQAFDLLIHVYSTQFRNLGFSCAVDVFYLLARKGTFPSLKTCNFXLSSLVKANEFE 203

Query: 271 NCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVY 330
            C E    + + M+E G  PD+ + T +++   K G ++ A E F  +   G  P+   Y
Sbjct: 204 KCCE----VFRVMSE-GACPDVFSFTNVINALCKGGKMENAIELFMKMEKLGISPNVVTY 258

Query: 331 NSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRI 390
           N +I      G+      L + M   G++ + + Y AL+    +         I + M  
Sbjct: 259 NCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHILDEMIG 318

Query: 391 EEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDK 450
             F P +     L++ Y + G+ + A    D MI     P      S++  + K + ++ 
Sbjct: 319 AGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEH 378

Query: 451 ALNLLLELEKDGFEPGPATYTVLVDWLGR 479
           A N L E+   G    P     +V WL +
Sbjct: 379 AENALEEILSSGLSIHPDNCYSVVHWLCK 407



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 55/125 (44%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + +E F  NV  Y+ LI  + K   ++ AE    +M    I P+  T TV++  Y K GN
Sbjct: 666 MRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGN 725

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +++A      ++  G  PD   YN +   +  A        + D M T G+   E  Y  
Sbjct: 726 MEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTT 785

Query: 368 LLRSF 372
           L+  +
Sbjct: 786 LVHGW 790



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 77/167 (46%), Gaps = 10/167 (5%)

Query: 220 PSRIDWINLLDRL-----REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           P    + N+++ L      E   +L+ K+ +L +S      NV  Y+ +I+   +   L+
Sbjct: 218 PDVFSFTNVINALCKGGKMENAIELFMKMEKLGISP-----NVVTYNCIINGLCQNGRLD 272

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           +A  + +KM   G+ P++ T   L++   K    D+     + +   GF P+  V+N++I
Sbjct: 273 NAFELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHILDEMIGAGFNPNVVVFNNLI 332

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGA 381
             Y   G  +  + + D+MI+  I  +     +L++ F +   +  A
Sbjct: 333 DGYCKMGNIEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHA 379


>gi|410109889|gb|AFV61024.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           camara]
          Length = 431

 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 119/261 (45%), Gaps = 6/261 (2%)

Query: 218 LQPSRIDWINLLD---RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           L+PS + +  L++   RL + +     K A L       Q +V  YS LI+   KE+ ++
Sbjct: 173 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLA---SGVQPDVYTYSVLINGLCKESKMD 229

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
            A  +  +M   G+VP+ VT T L+  + K G +D A E ++ + S    PD   YN++I
Sbjct: 230 GANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLI 289

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
                 G  K    L+D M   G++  +  Y  L+    + GD+  A +    M  E  +
Sbjct: 290 YGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIR 349

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
               + T L+    Q G    A      M+ +G KPD      ++  + KK  + K   L
Sbjct: 350 LDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFCKKGDVWKGSKL 409

Query: 455 LLELEKDGFEPGPATYTVLVD 475
           L E+++DG  P   TY VL++
Sbjct: 410 LKEMQRDGHAPSVVTYNVLMN 430



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/313 (20%), Positives = 146/313 (46%), Gaps = 5/313 (1%)

Query: 191 CKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELV--- 247
           C+ + + ++ L+  +       E  E   P+ + + N+L     ++  +  +VA+ V   
Sbjct: 110 CRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDI--RVAQSVFDA 167

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +++   + +V  Y+ L++ + +   L++  R+   M  +G+ PD+ T +VL++   K   
Sbjct: 168 ITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESK 227

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D A   F+ +   G  P+   + ++I  +   G+  L M +   M++  +      Y  
Sbjct: 228 MDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNT 287

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    + GD++ A  + + M ++  +P   + T L++   + GD D A  +   MI+  
Sbjct: 288 LIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQEN 347

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            + DD    ++I+   ++     A  +L E+   G +P   TYT++V+   +   + +  
Sbjct: 348 IRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFCKKGDVWKGS 407

Query: 488 QLLGKISELGEAP 500
           +LL ++   G AP
Sbjct: 408 KLLKEMQRDGHAP 420



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 56/267 (20%), Positives = 110/267 (41%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E  +  ++  ++ L+    K+  +  A+ +   + + G+ P +V+   L++ Y + G+LD
Sbjct: 135 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 194

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
                  ++ + G QPD   Y+ +I       +      L D M+  G+  +   +  L+
Sbjct: 195 EGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLI 254

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               + G V  A +I   M  +   P L +   L+    + GD  QA    D M   G K
Sbjct: 255 DGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLK 314

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     ++I    K+  LD A      + ++        YT L+  L +     +AE++
Sbjct: 315 PDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKM 374

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAG 516
           L ++  +G  P       + + + + G
Sbjct: 375 LREMLSVGLKPDTGTYTMIVNEFCKKG 401


>gi|51971677|dbj|BAD44503.1| hypothetical protein [Arabidopsis thaliana]
          Length = 447

 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 137/299 (45%), Gaps = 11/299 (3%)

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           + A ++   M+E+G   D+ +   ++ +  K+  +++A E F +LR   F  D   YN +
Sbjct: 137 DKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGR-FSVDTVTYNVI 195

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           +  +    +    + ++  M+  GI  +   Y  +L+ F + G +R A +    M+  + 
Sbjct: 196 LNGWCLIKRTPKTLEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDC 255

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
           +  + + T +V  +G AG+  +AR+ FD MIR G  P      +MI    KK+ ++ A+ 
Sbjct: 256 EIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVV 315

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
           +  E+ + G+EP   TY VL+  L      +  E+L+ ++   G  P F+    +   Y+
Sbjct: 316 MFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYS 375

Query: 514 RAGIEKKALQALGFLEAKKEQMGPDDF---ERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
                +KAL          E+MG  D        N L++G F++       +   Q FA
Sbjct: 376 ECSEVEKALGLF-------EKMGSGDCLPNLDTYNILISGMFVRKRSEDMVVAGNQAFA 427



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 84/185 (45%), Gaps = 10/185 (5%)

Query: 232 LREQNTQL--YFKVAELVLSEESF--------QTNVRDYSKLIDAHAKENCLEDAERILK 281
           L   NT L  +F+  ++  + E F        + +V  Y+ ++        ++ A  +  
Sbjct: 224 LTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFD 283

Query: 282 KMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAG 341
           +M   G++P + T   ++ +  K  N++ A   FE +   G++P+   YN +I    +AG
Sbjct: 284 EMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAG 343

Query: 342 QPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCT 401
           +   G  L+  M   G E + + Y  ++R +++C +V  A  +   M   +  P L++  
Sbjct: 344 EFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYN 403

Query: 402 LLVEA 406
           +L+  
Sbjct: 404 ILISG 408



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/176 (20%), Positives = 74/176 (42%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E     N+  Y+ ++    +   +  A     +M +     D+VT T +VH +  AG 
Sbjct: 215 MVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGE 274

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           + RA+  F+ +   G  P    YN+MI         +  + + + M+  G E +   Y  
Sbjct: 275 IKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNV 334

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
           L+R     G+     ++   M  E  +P  ++  +++  Y +  + ++A   F+ M
Sbjct: 335 LIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKM 390


>gi|357436523|ref|XP_003588537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477585|gb|AES58788.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 653

 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/342 (21%), Positives = 154/342 (45%), Gaps = 17/342 (4%)

Query: 242 KVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM 301
           K+ +L+L++ + + +++ Y+ LI A  +   + +A  I+ KM  +G++PD VT   +   
Sbjct: 200 KLLDLMLTDGNSKPDLQTYNMLIKALCQSGNMSEAWNIVCKMPASGMLPDSVTFNTMAIG 259

Query: 302 YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS 361
           Y        A+     ++  G +P+++ +  ++  Y   GQ K  +  V  +   G + +
Sbjct: 260 YVLNSETAEAEAMILEMQRKGLEPNERTFTVIVNGYYKEGQIKEALQFVYRIKDLGFKPN 319

Query: 362 EEIYLALLRSFAQCGDVRGAGQITN-----------------IMRIEEFQPTLESCTLLV 404
             ++  L+  F    D  G  + +N                 +M+  + QP + + + ++
Sbjct: 320 LLVFNVLINGFVDRMDRDGVDEFSNTFAQEGKNQVTTPLVLRLMKEFQIQPDVVTYSTIM 379

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
            A+ QAG  D+ +  FD M++ G KPD    + ++  Y +    +KA  LL ++ + G  
Sbjct: 380 NAWSQAGFQDKCKQIFDNMLQSGVKPDVHAYSILVKGYVRSMETEKAEELLGDMIESGVR 439

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQA 524
           P   T+T ++   G    ++ A ++  K+ ELG +P  +   +L   YA+A    K+ + 
Sbjct: 440 PNVVTFTNVISGWGSSGRMDNAIKIFDKMCELGVSPNLRTFEALIWGYAKADQPWKSEEI 499

Query: 525 LGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQ 566
           L  +E          F  +       G  ++A R+  +  A+
Sbjct: 500 LQLMEEFHVHPKKSTFLLVSKAWRFAGLTEEAIRLRSISRAK 541



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 156/365 (42%), Gaps = 56/365 (15%)

Query: 221 SRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERI 279
           SR   +N+L    + Q   + FK     L EE  Q ++  Y+ L+ A   + C +    +
Sbjct: 76  SRTKLLNILIVCGKPQAANVIFKK----LIEEGHQPSLITYTSLLHALTMQKCFKSIHSL 131

Query: 280 LKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339
           + ++ E  +  + +    +++ ++++GN++ AK+  + ++  GF+P    Y+++I  Y  
Sbjct: 132 VSQVEEKQMKTNSIFYNAVINAFAESGNMEDAKKTVQKMKESGFRPSTGTYSNLIKGYGI 191

Query: 340 AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLES 399
            G+    M L+D+M+T G  +                                  P L++
Sbjct: 192 VGKSGEAMKLLDLMLTDGNSK----------------------------------PDLQT 217

Query: 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELE 459
             +L++A  Q+G+  +A +    M   G  PD     +M   Y   +   +A  ++LE++
Sbjct: 218 YNMLIKALCQSGNMSEAWNIVCKMPASGMLPDSVTFNTMAIGYVLNSETAEAEAMILEMQ 277

Query: 460 KDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP---FKIQVS-LCDMYARA 515
           + G EP   T+TV+V+   +   I EA Q + +I +LG  P    F + ++   D   R 
Sbjct: 278 RKGLEPNERTFTVIVNGYYKEGQIKEALQFVYRIKDLGFKPNLLVFNVLINGFVDRMDRD 337

Query: 516 GIE----------KKALQALGFLEAKKE-QMGPD--DFERIINGLLAGGFLQDAQRVHGL 562
           G++          K  +     L   KE Q+ PD   +  I+N     GF    +++   
Sbjct: 338 GVDEFSNTFAQEGKNQVTTPLVLRLMKEFQIQPDVVTYSTIMNAWSQAGFQDKCKQIFDN 397

Query: 563 MEAQG 567
           M   G
Sbjct: 398 MLQSG 402



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 11/155 (7%)

Query: 189 GKCKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVL 248
           GK ++ T  +L L KE             +QP  + +  +++   +   Q   K     +
Sbjct: 350 GKNQVTTPLVLRLMKEFQ-----------IQPDVVTYSTIMNAWSQAGFQDKCKQIFDNM 398

Query: 249 SEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNL 308
            +   + +V  YS L+  + +    E AE +L  M E+G+ P++VT T ++  +  +G +
Sbjct: 399 LQSGVKPDVHAYSILVKGYVRSMETEKAEELLGDMIESGVRPNVVTFTNVISGWGSSGRM 458

Query: 309 DRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343
           D A + F+ +   G  P+ + + ++I  Y  A QP
Sbjct: 459 DNAIKIFDKMCELGVSPNLRTFEALIWGYAKADQP 493


>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 559

 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 121/244 (49%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++ ++  + +V  Y+ L+D +     +  A+ I   +++ G+ P+I + ++++H + K  
Sbjct: 307 MMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIK 366

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            +D A   F+ +  +   PD   YNS+I      G+    + LVD M   G+   +  Y 
Sbjct: 367 KVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYN 426

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           ++L +  +   V  A  +   M+ E  QP + + T LV+   + G  + AR  F+ ++  
Sbjct: 427 SILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLCKNGRLEDARIVFEDLLVK 486

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G+  D     +MI  +    L D++L+LL ++E++G  P   TY +++  L      ++A
Sbjct: 487 GYILDVNIYTAMIQGFCSHGLFDESLDLLSKMEENGCIPNAVTYEIIICSLFDKDENDKA 546

Query: 487 EQLL 490
           E+LL
Sbjct: 547 EKLL 550



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 158/349 (45%), Gaps = 11/349 (3%)

Query: 234 EQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIV 293
            Q  Q + KV  L      F  N   Y  LI+   K      A ++L++++   + P++V
Sbjct: 159 HQALQFHDKVVAL-----GFHLNKVSYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVV 213

Query: 294 TSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMM 353
               ++    K   ++ A + +  + S G  PD   YN++I  +   G+ K    L + M
Sbjct: 214 MYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKM 273

Query: 354 ITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDP 413
           I   I  +   +  L+  F +   ++ A  +  +M  +  +P + +   L++ Y    + 
Sbjct: 274 IFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEV 333

Query: 414 DQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVL 473
           ++A+  F+ + + G  P+    + MI  + K   +D+A+NL  E+  +   P   TY  L
Sbjct: 334 NKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSL 393

Query: 474 VDWLGRLQLINEAEQLLGKISELGEAPPFKIQV-SLCDMYARAGIEKKALQALGFLEAKK 532
           +D L +L  I+ A +L+ ++ + G  P  KI   S+ D   +     KA+  L   + K 
Sbjct: 394 IDGLCKLGKISYALKLVDEMHDRG-VPHDKITYNSILDALCKNHQVDKAIALLT--KMKD 450

Query: 533 EQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
           E + PD   +  +++GL   G L+DA+ V   +  +G+     +  A+I
Sbjct: 451 EGIQPDICTYTTLVDGLCKNGRLEDARIVFEDLLVKGYILDVNIYTAMI 499



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/314 (22%), Positives = 131/314 (41%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           Q NV  Y+ +ID+  K   + +A  +  +M   GI PD+VT   L+  +   G +  A +
Sbjct: 209 QPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATD 268

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            F  +      P+   +N ++  +    + K   +++ MM+  GI+     Y +L+  + 
Sbjct: 269 LFNKMIFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYC 328

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
              +V  A  I N +      P + S ++++  + +    D+A + F  M      PD  
Sbjct: 329 LVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVV 388

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
              S+I    K   +  AL L+ E+   G      TY  ++D L +   +++A  LL K+
Sbjct: 389 TYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKM 448

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFL 553
            + G  P      +L D   + G  + A      L  K   +  + +  +I G  + G  
Sbjct: 449 KDEGIQPDICTYTTLVDGLCKNGRLEDARIVFEDLLVKGYILDVNIYTAMIQGFCSHGLF 508

Query: 554 QDAQRVHGLMEAQG 567
            ++  +   ME  G
Sbjct: 509 DESLDLLSKMEENG 522



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 64/138 (46%), Gaps = 2/138 (1%)

Query: 222 RIDWINLLDRLREQNTQLYFKVAELV-LSEESFQTNVRDYSKLIDAHAKENCLEDAERIL 280
           +I + ++LD L  +N Q+   +A L  + +E  Q ++  Y+ L+D   K   LEDA  + 
Sbjct: 422 KITYNSILDALC-KNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLCKNGRLEDARIVF 480

Query: 281 KKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNA 340
           + +   G + D+   T ++  +   G  D + +    +  +G  P+   Y  +I +  + 
Sbjct: 481 EDLLVKGYILDVNIYTAMIQGFCSHGLFDESLDLLSKMEENGCIPNAVTYEIIICSLFDK 540

Query: 341 GQPKLGMSLVDMMITSGI 358
            +      L+  MIT G+
Sbjct: 541 DENDKAEKLLREMITRGL 558


>gi|410109947|gb|AFV61053.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           salviifolia]
          Length = 431

 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 119/261 (45%), Gaps = 6/261 (2%)

Query: 218 LQPSRIDWINLLD---RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           L+PS + +  L++   RL   +     K A L       Q +V  YS LI+  +KE+ ++
Sbjct: 173 LRPSAVSYNTLMNGYIRLGVLDEGFRLKSAMLA---SGVQPDVYTYSVLINGLSKESKMD 229

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           DA+ +  +M   G+VP+ VT T L+  + K G +D A E ++ + S    PD   YN++I
Sbjct: 230 DADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLI 289

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
                 G  K    L+D M   G++  +  Y  L+    + GD+  A +    M  E  +
Sbjct: 290 YGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIR 349

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
                 T L+    Q G    A      M+ +G  PD      +I  + KK  + K   L
Sbjct: 350 LDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLNPDTGTYTMIINEFCKKGDVWKGSKL 409

Query: 455 LLELEKDGFEPGPATYTVLVD 475
           L E+++DG  P   TY VL++
Sbjct: 410 LKEMQRDGHVPSVVTYNVLMN 430



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/241 (22%), Positives = 113/241 (46%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L++ + +   L++  R+   M  +G+ PD+ T +VL++  SK   +D A E F+ + 
Sbjct: 180 YNTLMNGYIRLGVLDEGFRLKSAMLASGVQPDVYTYSVLINGLSKESKMDDADELFDEML 239

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P+   + ++I  +   G+  L M +   M++  +      Y  L+    + GD++
Sbjct: 240 VKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLK 299

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  + + M  +  +P   + T L++   + GD D A  +   MI+   + DD    ++I
Sbjct: 300 QAHDLIDDMSRKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDDVVYTALI 359

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
           +   ++     A  +L E+   G  P   TYT++++   +   + +  +LL ++   G  
Sbjct: 360 SGLCQEGRSVDAEKMLREMLSVGLNPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHV 419

Query: 500 P 500
           P
Sbjct: 420 P 420



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 89/191 (46%)

Query: 285 ENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPK 344
           E G    +    +L+H + K G++  A+  F+++   G +P    YN+++  Y+  G   
Sbjct: 135 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIRLGVLD 194

Query: 345 LGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
            G  L   M+ SG++     Y  L+   ++   +  A ++ + M ++   P   + T L+
Sbjct: 195 EGFRLKSAMLASGVQPDVYTYSVLINGLSKESKMDDADELFDEMLVKGLVPNGVTFTTLI 254

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
           + + + G  D A   +  M+     PD     ++I    KK  L +A +L+ ++ + G +
Sbjct: 255 DGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLK 314

Query: 465 PGPATYTVLVD 475
           P   TYT L+D
Sbjct: 315 PDKITYTTLID 325



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 57/267 (21%), Positives = 109/267 (40%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E  +  ++  ++ L+    K+  +  A+ +   + + G+ P  V+   L++ Y + G LD
Sbjct: 135 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIRLGVLD 194

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
                  ++ + G QPD   Y+ +I       +      L D M+  G+  +   +  L+
Sbjct: 195 EGFRLKSAMLASGVQPDVYTYSVLINGLSKESKMDDADELFDEMLVKGLVPNGVTFTTLI 254

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               + G V  A +I   M  +   P L +   L+    + GD  QA    D M R G K
Sbjct: 255 DGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLK 314

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     ++I    K+  LD A      + ++        YT L+  L +     +AE++
Sbjct: 315 PDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKM 374

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAG 516
           L ++  +G  P       + + + + G
Sbjct: 375 LREMLSVGLNPDTGTYTMIINEFCKKG 401


>gi|359497434|ref|XP_003635514.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 347

 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 123/285 (43%), Gaps = 6/285 (2%)

Query: 219 QPSRIDWINLLDRLREQNTQLYFKVAELVLSEES---FQTNVRDYSKLIDAHAKENCLED 275
           +P+ I +  L+DR  ++      + A  VL E S      N   Y+ LI A  K+  ++D
Sbjct: 46  EPNVITYTILIDRFCKEGR---LEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQD 102

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A  +   M+  G  PDI T   L+    K    + A   ++ +   G   +   YN++I 
Sbjct: 103 ALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIH 162

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
           A++  G  +  + LV+ M+  G    +  Y  L+++  + G++     +   M  +   P
Sbjct: 163 AFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNP 222

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
              SC +L+    + G+   A      MI  G  PD     S+I    K     +ALNL 
Sbjct: 223 NNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLF 282

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
            +L+ +G  P   TY  L+ W  +  + ++A  LL +  + G  P
Sbjct: 283 DKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIP 327



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 52/115 (45%)

Query: 263 LIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG 322
           LI+   +   ++ A   L+ M   G+ PDIVT   L++   K G    A   F+ L+  G
Sbjct: 230 LINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEG 289

Query: 323 FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
             PD   YN++I  +   G       L+   + SG   +E  +  L+ +F + GD
Sbjct: 290 ICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEGD 344



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 68/332 (20%), Positives = 125/332 (37%), Gaps = 39/332 (11%)

Query: 287 GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLG 346
           G  PDI T   L+    K G L  A+E    ++  G +P+   Y  +I  +   G+ +  
Sbjct: 9   GCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEA 68

Query: 347 MSLVDMMITSGIERSEEIYLALLRSFAQ----------CGDVRGAGQ----------ITN 386
            +++D M   G+  +   Y  L+ +  +           GD+   G           I  
Sbjct: 69  RNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFG 128

Query: 387 IMRIEEFQPTLE---------------SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
           + ++ +F+  L                +   L+ A+ + G   +A    + M+  G   D
Sbjct: 129 LCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLD 188

Query: 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
           D     +I A  +   ++K L L  ++   G  P   +  +L++ L R   I  A + L 
Sbjct: 189 DITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLR 248

Query: 492 KISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLA 549
            +   G  P      SL +   + G  ++AL    F + + E + PD   +  +I+    
Sbjct: 249 DMIHRGLTPDIVTYNSLINGLCKTGRAQEALNL--FDKLQVEGICPDAITYNTLISWHCK 306

Query: 550 GGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
            G   DA  +       GF  +E     L+S+
Sbjct: 307 EGMFDDAHLLLSRGVDSGFIPNEVTWYILVSN 338



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 98/244 (40%), Gaps = 6/244 (2%)

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           ES+ S G  PD   YN++I+     G       L++ M   G E +   Y  L+  F + 
Sbjct: 3   ESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKE 62

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A  + + M  +           L+ A  +      A + F  M   G KPD    
Sbjct: 63  GRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTF 122

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            S+I    K N  ++AL L  ++  +G      TY  L+    R   + EA +L+  +  
Sbjct: 123 NSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLF 182

Query: 496 LGEAPPFKIQVS-LCDMYARAGIEKKALQALGFLEAKKEQMGPDDFER--IINGLLAGGF 552
            G  P   I  + L     RAG  +K L    F +   + + P++     +INGL   G 
Sbjct: 183 RG-CPLDDITYNGLIKALCRAGNIEKGLAL--FEDMMSKGLNPNNISCNILINGLCRTGN 239

Query: 553 LQDA 556
           +Q A
Sbjct: 240 IQHA 243



 Score = 40.4 bits (93), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 72/165 (43%), Gaps = 13/165 (7%)

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
           M+ +G  PD     ++I    KK  L  A  L+ E++  G EP   TYT+L+D   +   
Sbjct: 5   MLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGR 64

Query: 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEK--KALQALGFLEAKKEQMGPDDF 540
           + EA  +L ++S  G+          C + A    EK   AL   G + +K  +  PD F
Sbjct: 65  LEEARNVLDEMS--GKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCK--PDIF 120

Query: 541 ERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFN 585
               N L+ G       +V+   EA G      L+  + ++ T+N
Sbjct: 121 T--FNSLIFG-----LCKVNKFEEALGLYQDMLLEGVIANTITYN 158


>gi|255660828|gb|ACU25583.1| pentatricopeptide repeat-containing protein [Lantana canescens]
          Length = 418

 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 115/255 (45%), Gaps = 6/255 (2%)

Query: 218 LQPSRIDWINLLD---RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           L+PS + +  L++   RL + +     K A L       Q +V  YS LI+   KE+ ++
Sbjct: 167 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLA---SGVQPDVYTYSVLINGLCKESKMD 223

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           DA  +  +M   G+VP+ VT T L+  + K G +D A E ++ + S    PD   YN++I
Sbjct: 224 DANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLI 283

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
                 G  K    L+D M   G++  +  Y  L+    + GD+  A +    M  E  +
Sbjct: 284 YGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIR 343

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
               + T L     Q G    A      M+ +G KPD R    +I  + KK  + K   L
Sbjct: 344 LDEVAYTALXSGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKL 403

Query: 455 LLELEKDGFEPGPAT 469
           L E+++DG  P   T
Sbjct: 404 LKEMQRDGHVPSVVT 418



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/313 (19%), Positives = 145/313 (46%), Gaps = 5/313 (1%)

Query: 191 CKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELV--- 247
           C+ + + ++ L+  +       E  E   P+ + + N+L     ++  +  +VA+ V   
Sbjct: 104 CRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDI--RVAQSVFDA 161

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +++   + +V  Y+ L++ + +   L++  R+   M  +G+ PD+ T +VL++   K   
Sbjct: 162 ITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESK 221

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D A E F+ +   G  P+   + ++I  +   G+  L M +   M++  +      Y  
Sbjct: 222 MDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNT 281

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    + GD++ A  + + M ++  +P   + T L++   + GD D A  +   MI+  
Sbjct: 282 LIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQEN 341

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            + D+    ++ +   ++     A  +L E+   G +P   TYT++++   +   + +  
Sbjct: 342 IRLDEVAYTALXSGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGS 401

Query: 488 QLLGKISELGEAP 500
           +LL ++   G  P
Sbjct: 402 KLLKEMQRDGHVP 414



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 56/267 (20%), Positives = 110/267 (41%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E  +  ++  ++ L+    K+  +  A+ +   + + G+ P +V+   L++ Y + G+LD
Sbjct: 129 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 188

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
                  ++ + G QPD   Y+ +I       +      L D M+  G+  +   +  L+
Sbjct: 189 EGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLI 248

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               + G V  A +I   M  +   P L +   L+    + GD  QA    D M   G K
Sbjct: 249 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLK 308

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     ++I    K+  LD A      + ++        YT L   L +     +AE++
Sbjct: 309 PDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALXSGLCQEGRSVDAEKM 368

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAG 516
           L ++  +G  P  +    + + + + G
Sbjct: 369 LREMLSVGLKPDARTYTMIINEFCKKG 395


>gi|356536609|ref|XP_003536829.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g23020-like [Glycine max]
          Length = 787

 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 139/283 (49%), Gaps = 4/283 (1%)

Query: 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318
            YS LI   A  +    A+  LKKM E G+V D V   V++  ++K G  + A+E ++ +
Sbjct: 491 SYSSLIHILASADKPHLAKSYLKKMQEAGLVSDCVPYCVVISSFTKLGQFEMAEELYKEM 550

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
             +  QPD  +Y   I A+ +AG  K  ++ V+ M  +G+  +  IY +L++ + + G +
Sbjct: 551 LGYAVQPDVIIYGVFINAFADAGSVKEAINYVNEMRKAGLPGNPAIYNSLIKLYTKVGYL 610

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
           + A +   ++++ +  P+L S   +++ Y +    +QA+  F+ +++     ++   A M
Sbjct: 611 KEAQETYKLIQLSDEGPSLFSSNCMIDLYTERLMVEQAKEIFESLMK-NEVANEFSYAMM 669

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           +  Y K   LD+A+ +  ++ + GF     +Y  ++      + + EA +   ++ + G 
Sbjct: 670 LCMYKKIGRLDEAIQIATQMRRLGFLTDILSYNNVLGLYSMDRRLREATETFKEMIKSGV 729

Query: 499 APPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFE 541
            P      +L ++    G+ K   QA+G LE   ++  P   +
Sbjct: 730 QPDDFTFRALANILLNCGVSK---QAVGRLEVMVKRDAPHGLQ 769



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 120/277 (43%), Gaps = 12/277 (4%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS  IDA+ +      AE++     E   +  ++   V++  Y      D+A + F+S++
Sbjct: 423 YSANIDAYGEWGYTLAAEKVFICCKEKKKLT-VLEFNVMIKAYGIGKCYDKACQLFDSMK 481

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G   DK  Y+S+I    +A +P L  S +  M  +G+      Y  ++ SF + G   
Sbjct: 482 KFGVVADKCSYSSLIHILASADKPHLAKSYLKKMQEAGLVSDCVPYCVVISSFTKLGQFE 541

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++   M     QP +    + + A+  AG   +A +  + M + G   +     S+I
Sbjct: 542 MAEELYKEMLGYAVQPDVIIYGVFINAFADAGSVKEAINYVNEMRKAGLPGNPAIYNSLI 601

Query: 440 AAYGKKNLLDKALNL--LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
             Y K   L +A     L++L  +G  P   +   ++D      ++ +A+++   + +  
Sbjct: 602 KLYTKVGYLKEAQETYKLIQLSDEG--PSLFSSNCMIDLYTERLMVEQAKEIFESLMKNE 659

Query: 498 EAPPFKIQVSLCDMYARAGIEKKALQA------LGFL 528
            A  F   + LC MY + G   +A+Q       LGFL
Sbjct: 660 VANEFSYAMMLC-MYKKIGRLDEAIQIATQMRRLGFL 695



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 70/334 (20%), Positives = 142/334 (42%), Gaps = 8/334 (2%)

Query: 231 RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVP 290
           RLR Q   L+ K+ E     +++  N+     LI  + K N ++ A +   +M +  + P
Sbjct: 296 RLR-QACLLFQKMGEFRCVPDTWTYNI-----LISLNIKNNKVKLAAKYFARMKKAFLEP 349

Query: 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV 350
           D+V+   L++ YS    +  A+E    +     + D+   +++   YV +G  +      
Sbjct: 350 DVVSYRTLLYAYSTRKMVREAEELIREMDERDLEIDEFTQSALTRMYVESGMLEQSWLWF 409

Query: 351 DMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410
                +G   S + Y A + ++ + G    A ++  I   E+ + T+    ++++AYG  
Sbjct: 410 RRFHLAG-NISSDCYSANIDAYGEWGYTLAAEKVF-ICCKEKKKLTVLEFNVMIKAYGIG 467

Query: 411 GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATY 470
              D+A   FD M + G   D    +S+I      +    A + L ++++ G       Y
Sbjct: 468 KCYDKACQLFDSMKKFGVVADKCSYSSLIHILASADKPHLAKSYLKKMQEAGLVSDCVPY 527

Query: 471 TVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEA 530
            V++    +L     AE+L  ++      P   I     + +A AG  K+A+  +  +  
Sbjct: 528 CVVISSFTKLGQFEMAEELYKEMLGYAVQPDVIIYGVFINAFADAGSVKEAINYVNEMRK 587

Query: 531 KKEQMGPDDFERIINGLLAGGFLQDAQRVHGLME 564
                 P  +  +I      G+L++AQ  + L++
Sbjct: 588 AGLPGNPAIYNSLIKLYTKVGYLKEAQETYKLIQ 621



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 72/344 (20%), Positives = 136/344 (39%), Gaps = 22/344 (6%)

Query: 191 CKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSE 250
           C  I   + +L    D    L +W+E     R   + L  ++  Q      ++ E   ++
Sbjct: 63  CGSIPAVLRALNTTHDLDNALRQWEEGTLSDREISVILKAQVSWQRA---LQIFEWFKNK 119

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
             +  NV  Y+ ++    +    +  E +  +MN  G+ P   T   L+  YSK G  + 
Sbjct: 120 GRYDLNVIHYNIMLCTLGRARKWDLVESLWTEMNAKGVAPVNSTYGTLIDAYSKGGLKEE 179

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPK--------------LGMSLVDMMIT- 355
           A    + ++S G +PD+     +++ Y  AG+ +                + + D +++ 
Sbjct: 180 ALAWLQRMQSQGMEPDEVTMGIVVLLYKRAGEFQKAQEFFRRWMRGAPFRLGVDDKVVSH 239

Query: 356 SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL--LVEAYGQAGDP 413
           + +  S   Y  L+ ++ + G    A +     RI      L + TL  ++  YG  G  
Sbjct: 240 TNVCLSSHTYATLIDTYGKGGQFHAACE--TFARIIRQGRALNTVTLNTMIHLYGNCGRL 297

Query: 414 DQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVL 473
            QA   F  M      PD      +I+   K N +  A      ++K   EP   +Y  L
Sbjct: 298 RQACLLFQKMGEFRCVPDTWTYNILISLNIKNNKVKLAAKYFARMKKAFLEPDVVSYRTL 357

Query: 474 VDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI 517
           +      +++ EAE+L+ ++ E         Q +L  MY  +G+
Sbjct: 358 LYAYSTRKMVREAEELIREMDERDLEIDEFTQSALTRMYVESGM 401



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 69/301 (22%), Positives = 113/301 (37%), Gaps = 36/301 (11%)

Query: 243 VAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMY 302
           V + V+S  +   +   Y+ LID + K      A     ++   G   + VT   ++H+Y
Sbjct: 232 VDDKVVSHTNVCLSSHTYATLIDTYGKGGQFHAACETFARIIRQGRALNTVTLNTMIHLY 291

Query: 303 SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE 362
              G L +A   F+ +      PD   YN +I   +   + KL       M  + +E   
Sbjct: 292 GNCGRLRQACLLFQKMGEFRCVPDTWTYNILISLNIKNNKVKLAAKYFARMKKAFLEPDV 351

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIM-----RIEEFQPT-----------LESCTLLVEA 406
             Y  LL +++    VR A ++   M      I+EF  +           LE   L    
Sbjct: 352 VSYRTLLYAYSTRKMVREAEELIREMDERDLEIDEFTQSALTRMYVESGMLEQSWLWFRR 411

Query: 407 YGQAGD--PDQARSNFDYMIRLGH-----------KPDDRCTA----SMIAAYGKKNLLD 449
           +  AG+   D   +N D     G+           K   + T      MI AYG     D
Sbjct: 412 FHLAGNISSDCYSANIDAYGEWGYTLAAEKVFICCKEKKKLTVLEFNVMIKAYGIGKCYD 471

Query: 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG---EAPPFKIQV 506
           KA  L   ++K G      +Y+ L+  L      + A+  L K+ E G   +  P+ + +
Sbjct: 472 KACQLFDSMKKFGVVADKCSYSSLIHILASADKPHLAKSYLKKMQEAGLVSDCVPYCVVI 531

Query: 507 S 507
           S
Sbjct: 532 S 532



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/99 (24%), Positives = 49/99 (49%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N   Y+ ++  + K   L++A +I  +M   G + DI++   ++ +YS    L  A E F
Sbjct: 662 NEFSYAMMLCMYKKIGRLDEAIQIATQMRRLGFLTDILSYNNVLGLYSMDRRLREATETF 721

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMI 354
           + +   G QPD   + ++    +N G  K  +  +++M+
Sbjct: 722 KEMIKSGVQPDDFTFRALANILLNCGVSKQAVGRLEVMV 760


>gi|297801170|ref|XP_002868469.1| hypothetical protein ARALYDRAFT_330235 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297314305|gb|EFH44728.1| hypothetical protein ARALYDRAFT_330235 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 448

 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 146/319 (45%), Gaps = 9/319 (2%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +VR Y+ L+  + ++  LE A R+L  M E  +  +  T  +L++ Y  AG L+ +    
Sbjct: 70  SVRLYNALLSGYLRKGQLELAVRVLDHMKEENVDKNQETCEILLNYYVSAGRLEESWRVV 129

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             ++   F+ +  VY  +I  Y + G  K  + +V+ +   G+    EIY +++ +F + 
Sbjct: 130 NEMKKRMFRLNSFVYGKIIRIYRDNGMWKKALGIVEEIKEIGLPMDVEIYNSIIDTFGKY 189

Query: 376 GDVRGAGQITNIMR-IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
           G++  A  +   M+   + +P + +   L+  +   G  D A   F  M   G  PD R 
Sbjct: 190 GELDEALDVLEKMQSSSDSKPNISTWNSLIRWHCHHGALDMALELFTMMQDQGLYPDPRM 249

Query: 435 TASMIAAYGKK---NLLDKAL-NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
             ++I   G+    N++DK   ++  +  KD      A Y  LV  +G+     + E+L+
Sbjct: 250 FVNLITRLGENGNWNMIDKHFESIKCKEHKD----TRAIYAALVQIIGQFGSFQDVEELV 305

Query: 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAG 550
           GK+   G AP   +  +  + YA+ G+ K+ ++ L  +E +  +        +IN     
Sbjct: 306 GKLKSQGVAPSANLFCTFANAYAQQGLYKQTVKVLKMMENEGIEPNLIMLNVLINAFGTA 365

Query: 551 GFLQDAQRVHGLMEAQGFA 569
           G   +A  ++  ++  GF 
Sbjct: 366 GKHMEALSIYHHIKESGFT 384



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/310 (21%), Positives = 126/310 (40%), Gaps = 20/310 (6%)

Query: 226 INLLDRLREQNTQLYFKVAELVLS--------EES-----------FQTNVRDYSKLIDA 266
           + +LD ++E+N     +  E++L+        EES           F+ N   Y K+I  
Sbjct: 91  VRVLDHMKEENVDKNQETCEILLNYYVSAGRLEESWRVVNEMKKRMFRLNSFVYGKIIRI 150

Query: 267 HAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG-FQP 325
           +      + A  I++++ E G+  D+     ++  + K G LD A +  E ++S    +P
Sbjct: 151 YRDNGMWKKALGIVEEIKEIGLPMDVEIYNSIIDTFGKYGELDEALDVLEKMQSSSDSKP 210

Query: 326 DKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQIT 385
           +   +NS+I  + + G   + + L  MM   G+     +++ L+    + G+     +  
Sbjct: 211 NISTWNSLIRWHCHHGALDMALELFTMMQDQGLYPDPRMFVNLITRLGENGNWNMIDKHF 270

Query: 386 NIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKK 445
             ++ +E + T      LV+  GQ G           +   G  P      +   AY ++
Sbjct: 271 ESIKCKEHKDTRAIYAALVQIIGQFGSFQDVEELVGKLKSQGVAPSANLFCTFANAYAQQ 330

Query: 446 NLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQ 505
            L  + + +L  +E +G EP      VL++  G      EA  +   I E G  P     
Sbjct: 331 GLYKQTVKVLKMMENEGIEPNLIMLNVLINAFGTAGKHMEALSIYHHIKESGFTPDVVTY 390

Query: 506 VSLCDMYARA 515
            +L   + RA
Sbjct: 391 STLMKAFTRA 400



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/220 (21%), Positives = 97/220 (44%)

Query: 243 VAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMY 302
           V E + S    + N+  ++ LI  H     L+ A  +   M + G+ PD      L+   
Sbjct: 198 VLEKMQSSSDSKPNISTWNSLIRWHCHHGALDMALELFTMMQDQGLYPDPRMFVNLITRL 257

Query: 303 SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE 362
            + GN +   + FES++    +  + +Y +++      G  +    LV  + + G+  S 
Sbjct: 258 GENGNWNMIDKHFESIKCKEHKDTRAIYAALVQIIGQFGSFQDVEELVGKLKSQGVAPSA 317

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
            ++     ++AQ G  +   ++  +M  E  +P L    +L+ A+G AG   +A S + +
Sbjct: 318 NLFCTFANAYAQQGLYKQTVKVLKMMENEGIEPNLIMLNVLINAFGTAGKHMEALSIYHH 377

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           +   G  PD    ++++ A+ +    +K   +  E+E  G
Sbjct: 378 IKESGFTPDVVTYSTLMKAFTRAKKYEKVPEIFREMEASG 417



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/319 (19%), Positives = 141/319 (44%), Gaps = 5/319 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL- 318
           Y++ I    +   + +A  ++ +++  G  PD ++   L+   +  G    A   F+ + 
Sbjct: 2   YNRWIRYCCRTGEINEAMSLVAEIDSLGSHPDPLSYVSLIETLASLGRTLEADALFQEVV 61

Query: 319 --RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
             R +G     ++YN+++  Y+  GQ +L + ++D M    +++++E    LL  +   G
Sbjct: 62  RFRING-SYSVRLYNALLSGYLRKGQLELAVRVLDHMKEENVDKNQETCEILLNYYVSAG 120

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
            +  + ++ N M+   F+        ++  Y   G   +A    + +  +G   D     
Sbjct: 121 RLEESWRVVNEMKKRMFRLNSFVYGKIIRIYRDNGMWKKALGIVEEIKEIGLPMDVEIYN 180

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDG-FEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
           S+I  +GK   LD+AL++L +++     +P  +T+  L+ W      ++ A +L   + +
Sbjct: 181 SIIDTFGKYGELDEALDVLEKMQSSSDSKPNISTWNSLIRWHCHHGALDMALELFTMMQD 240

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
            G  P  ++ V+L       G      +    ++ K+ +     +  ++  +   G  QD
Sbjct: 241 QGLYPDPRMFVNLITRLGENGNWNMIDKHFESIKCKEHKDTRAIYAALVQIIGQFGSFQD 300

Query: 556 AQRVHGLMEAQGFAASERL 574
            + + G +++QG A S  L
Sbjct: 301 VEELVGKLKSQGVAPSANL 319



 Score = 38.9 bits (89), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 40/82 (48%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++  E  + N+   + LI+A        +A  I   + E+G  PD+VT + L+  +++A 
Sbjct: 342 MMENEGIEPNLIMLNVLINAFGTAGKHMEALSIYHHIKESGFTPDVVTYSTLMKAFTRAK 401

Query: 307 NLDRAKEAFESLRSHGFQPDKK 328
             ++  E F  + + G   D+K
Sbjct: 402 KYEKVPEIFREMEASGCTADRK 423


>gi|41152692|dbj|BAD08216.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 401

 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 106/224 (47%), Gaps = 7/224 (3%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  YS +I+   KE  L+       KM +  I P++VT   ++    KA  +D+A E  
Sbjct: 87  DVVSYSTVINGFFKEGDLD-------KMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVL 139

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
            ++   G  PD   YNS++  + ++GQPK  +  +  M + G+E     Y +L+    + 
Sbjct: 140 TTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKN 199

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G    A +I + M     +P + +   L++ Y   G   +     D M+R G  P+    
Sbjct: 200 GRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVF 259

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
           + ++ AY K+  +++A+ +  ++ + G  P   TY  ++D L +
Sbjct: 260 SILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCK 303



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 75/332 (22%), Positives = 147/332 (44%), Gaps = 13/332 (3%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENG--IVPDIVTSTVLVHMYSKAGNLDRAKE 313
           +V  Y+ L++    EN  ++A  +L  M ++G    PD+V+ + +++ + K G+LD+   
Sbjct: 50  DVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDK--- 106

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
               +      P+   YNS+I A   A      M ++  M+ SG+      Y +++  F 
Sbjct: 107 ----MLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFC 162

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
             G  + A      MR +  +P + +   L++   + G   +AR  FD M + G KPD  
Sbjct: 163 SSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDIT 222

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
              +++  Y  K  L +   LL  + ++G  P    +++LV    + + + EA  +  K+
Sbjct: 223 TYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKM 282

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGG 551
            + G  P      ++ D+  ++G  + A+  L F +   E + PD   +  +I+ L    
Sbjct: 283 RQQGLNPNAVTYGTVIDVLCKSGRVEDAM--LYFEQMIDEGLRPDSIVYNSLIHSLCIFD 340

Query: 552 FLQDAQRVHGLMEAQGFAASERLKVALISSQT 583
             + A+ +   M  +G   S     ++I S  
Sbjct: 341 KWEKAEELFLEMLDRGICLSTIFFNSIIDSHC 372



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 110/241 (45%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ ++         ++A   LKKM  +G+ PD+VT   L+    K G    A++ F+S+ 
Sbjct: 154 YNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMT 213

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +PD   Y +++  Y   G       L+D+M+ +GI  +  ++  L+ ++A+   V 
Sbjct: 214 KRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVE 273

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  + + MR +   P   +   +++   ++G  + A   F+ MI  G +PD     S+I
Sbjct: 274 EAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLI 333

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            +    +  +KA  L LE+   G       +  ++D   +   + E+ +L   +  +G  
Sbjct: 334 HSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVK 393

Query: 500 P 500
           P
Sbjct: 394 P 394



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 120/278 (43%), Gaps = 1/278 (0%)

Query: 240 YFKVAEL-VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVL 298
           +FK  +L  + ++    NV  Y+ +I A  K   ++ A  +L  M ++G++PD +T   +
Sbjct: 98  FFKEGDLDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSI 157

Query: 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
           VH +  +G    A    + +RS G +PD   YNS++      G+      + D M   G+
Sbjct: 158 VHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGL 217

Query: 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418
           +     Y  LL+ +A  G +     + ++M      P     ++LV AY +    ++A  
Sbjct: 218 KPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAML 277

Query: 419 NFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLG 478
            F  M + G  P+     ++I    K   ++ A+    ++  +G  P    Y  L+  L 
Sbjct: 278 VFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLC 337

Query: 479 RLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
                 +AE+L  ++ + G         S+ D + + G
Sbjct: 338 IFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEG 375



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/214 (20%), Positives = 94/214 (43%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           ++P  + + +L+D L +       +     +++   + ++  Y  L+  +A +  L +  
Sbjct: 182 VEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMH 241

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
            +L  M  NGI P+    ++LV  Y+K   ++ A   F  +R  G  P+   Y ++I   
Sbjct: 242 GLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVL 301

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
             +G+ +  M   + MI  G+     +Y +L+ S         A ++   M       + 
Sbjct: 302 CKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLST 361

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
                +++++ + G   ++   FD M+R+G KPD
Sbjct: 362 IFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPD 395


>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 740

 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 123/285 (43%), Gaps = 6/285 (2%)

Query: 219 QPSRIDWINLLDRLREQNTQLYFKVAELVLSEES---FQTNVRDYSKLIDAHAKENCLED 275
           +P+ I +  L+DR  ++      + A  VL E S      N   Y+ LI A  K+  ++D
Sbjct: 439 EPNVITYTILIDRFCKEGR---LEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQD 495

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A  +   M+  G  PDI T   L+    K    + A   ++ +   G   +   YN++I 
Sbjct: 496 ALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIH 555

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
           A++  G  +  + LV+ M+  G    +  Y  L+++  + G++     +   M  +   P
Sbjct: 556 AFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNP 615

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
              SC +L+    + G+   A      MI  G  PD     S+I    K     +ALNL 
Sbjct: 616 NNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLF 675

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
            +L+ +G  P   TY  L+ W  +  + ++A  LL +  + G  P
Sbjct: 676 DKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIP 720



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 88/374 (23%), Positives = 149/374 (39%), Gaps = 27/374 (7%)

Query: 212 AEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVL----SEESFQ--------TNVRD 259
            EW+ LL+P   D   L   L         K+ EL L    S E FQ         ++ D
Sbjct: 73  TEWERLLKP--FDLPELRTSLTRITPYQLCKLLELPLDVPTSMELFQWAGTQKGYCHMFD 130

Query: 260 -YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318
            Y  LID        +  + +L +M + GIV       +++  Y +AG   +A      +
Sbjct: 131 VYYMLIDKLGAAGEFKTTDALLMQMKQEGIVFRESLFILIMKHYGRAGLPGQATRLLLDM 190

Query: 319 RS-HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
           R  +  +P  + YN ++   +    PK+  ++   M++ GI  +   +  ++++     +
Sbjct: 191 RGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNE 250

Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
           V  A  +   M      P       L+ A  + G  ++     + M+ +G  PD      
Sbjct: 251 VDSACALLKDMTRHGCVPNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDVNTFND 310

Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
            I    K   + +A  L+  +   GF P   TY VL+  L R+  ++EA  LL K+    
Sbjct: 311 AIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPN-- 368

Query: 498 EAPPFKIQVSLCDMYARAG--IEKKALQALGFLEAKKEQMGPDDF--ERIINGLLAGGFL 553
             P   +  +L + Y   G   E KA+     L       GPD F    +I GL   G+L
Sbjct: 369 --PNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVG---CGPDIFTYNTLILGLCKKGYL 423

Query: 554 QDAQRVHGLMEAQG 567
             A+ +   M+ +G
Sbjct: 424 VSARELMNEMQIKG 437



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 75/364 (20%), Positives = 142/364 (39%), Gaps = 40/364 (10%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERIL-KKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA 314
           NV  ++ LI+ +     L++A+ ++ + M   G  PDI T   L+    K G L  A+E 
Sbjct: 370 NVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSAREL 429

Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
              ++  G +P+   Y  +I  +   G+ +   +++D M   G+  +   Y  L+ +  +
Sbjct: 430 MNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCK 489

Query: 375 ----------CGDVRGAGQ----------ITNIMRIEEFQPTLE---------------S 399
                      GD+   G           I  + ++ +F+  L                +
Sbjct: 490 DEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTIT 549

Query: 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELE 459
              L+ A+ + G   +A    + M+  G   DD     +I A  +   ++K L L  ++ 
Sbjct: 550 YNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMM 609

Query: 460 KDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEK 519
             G  P   +  +L++ L R   I  A + L  +   G  P      SL +   + G  +
Sbjct: 610 SKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQ 669

Query: 520 KALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVA 577
           +AL    F + + E + PD   +  +I+     G   DA  +       GF  +E     
Sbjct: 670 EALNL--FDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYI 727

Query: 578 LISS 581
           L+S+
Sbjct: 728 LVSN 731



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 52/115 (45%)

Query: 263 LIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG 322
           LI+   +   ++ A   L+ M   G+ PDIVT   L++   K G    A   F+ L+  G
Sbjct: 623 LINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEG 682

Query: 323 FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
             PD   YN++I  +   G       L+   + SG   +E  +  L+ +F + GD
Sbjct: 683 ICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEGD 737


>gi|356541064|ref|XP_003539003.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280,
           chloroplastic-like [Glycine max]
          Length = 703

 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/288 (22%), Positives = 136/288 (47%), Gaps = 2/288 (0%)

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR-AKEAFESLRSHGFQPDKKVYNS 332
           EDA ++ + M  + ++PD VT +++V +  K G+  + A + FE +   G +  ++V  +
Sbjct: 277 EDAWKVYESMEADNVLPDHVTCSIMVIVMRKLGHSAKDAWQFFEKMNGKGVKWGEEVLGA 336

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I ++   G     + ++  +   G+  +  +Y  L+ ++ +   V  A  +   M+ + 
Sbjct: 337 LIKSFCVEGLMSEALIILSELEKKGVSSNTIVYNTLMDAYCKSNRVEEAEGLFVEMKTKG 396

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGK-KNLLDKA 451
            +PT  +  +L+ AY +   P+        M   G KP+ +    +I+AYGK KN+ D A
Sbjct: 397 IKPTEATFNILMYAYSRKMQPEIVEKLMAEMQETGLKPNAKSYTCIISAYGKQKNMSDMA 456

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
            +  L+++KDG +P   +YT L+          +A      +   G  P  +   +L D 
Sbjct: 457 ADAFLKMKKDGIKPTSHSYTALIHAYSVSGWHEKAYAAFENMQREGIKPSIETYTALLDA 516

Query: 512 YARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           + RAG  +  ++    +  +K +     F  +++G    G+ ++A+ V
Sbjct: 517 FRRAGDTQTLMKIWKLMRREKVEGTRVTFNTLVDGFAKHGYYKEARDV 564



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 111/228 (48%), Gaps = 1/228 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNL-DRAKEAFESL 318
           ++ L+ A++++   E  E+++ +M E G+ P+  + T ++  Y K  N+ D A +AF  +
Sbjct: 404 FNILMYAYSRKMQPEIVEKLMAEMQETGLKPNAKSYTCIISAYGKQKNMSDMAADAFLKM 463

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
           +  G +P    Y ++I AY  +G  +   +  + M   GI+ S E Y ALL +F + GD 
Sbjct: 464 KKDGIKPTSHSYTALIHAYSVSGWHEKAYAAFENMQREGIKPSIETYTALLDAFRRAGDT 523

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
           +   +I  +MR E+ + T  +   LV+ + + G   +AR        +G  P       +
Sbjct: 524 QTLMKIWKLMRREKVEGTRVTFNTLVDGFAKHGYYKEARDVISKFANVGLHPTVMTYNML 583

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           + AY +     K   LL E+     +P   TY+ ++    R++  ++A
Sbjct: 584 MNAYARGGRHSKLPELLEEMAAHNLKPDSVTYSTMIYAFLRVRDFSQA 631



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/259 (22%), Positives = 120/259 (46%), Gaps = 1/259 (0%)

Query: 263 LIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG 322
           LI +   E  + +A  IL ++ + G+  + +    L+  Y K+  ++ A+  F  +++ G
Sbjct: 337 LIKSFCVEGLMSEALIILSELEKKGVSSNTIVYNTLMDAYCKSNRVEEAEGLFVEMKTKG 396

Query: 323 FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRG-A 381
            +P +  +N ++ AY    QP++   L+  M  +G++ + + Y  ++ ++ +  ++   A
Sbjct: 397 IKPTEATFNILMYAYSRKMQPEIVEKLMAEMQETGLKPNAKSYTCIISAYGKQKNMSDMA 456

Query: 382 GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441
                 M+ +  +PT  S T L+ AY  +G  ++A + F+ M R G KP      +++ A
Sbjct: 457 ADAFLKMKKDGIKPTSHSYTALIHAYSVSGWHEKAYAAFENMQREGIKPSIETYTALLDA 516

Query: 442 YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
           + +       + +   + ++  E    T+  LVD   +     EA  ++ K + +G  P 
Sbjct: 517 FRRAGDTQTLMKIWKLMRREKVEGTRVTFNTLVDGFAKHGYYKEARDVISKFANVGLHPT 576

Query: 502 FKIQVSLCDMYARAGIEKK 520
                 L + YAR G   K
Sbjct: 577 VMTYNMLMNAYARGGRHSK 595



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 102/216 (47%), Gaps = 1/216 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLED-AERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           + E   + N + Y+ +I A+ K+  + D A     KM ++GI P   + T L+H YS +G
Sbjct: 427 MQETGLKPNAKSYTCIISAYGKQKNMSDMAADAFLKMKKDGIKPTSHSYTALIHAYSVSG 486

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
             ++A  AFE+++  G +P  + Y +++ A+  AG  +  M +  +M    +E +   + 
Sbjct: 487 WHEKAYAAFENMQREGIKPSIETYTALLDAFRRAGDTQTLMKIWKLMRREKVEGTRVTFN 546

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+  FA+ G  + A  + +        PT+ +  +L+ AY + G   +     + M   
Sbjct: 547 TLVDGFAKHGYYKEARDVISKFANVGLHPTVMTYNMLMNAYARGGRHSKLPELLEEMAAH 606

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
             KPD    ++MI A+ +     +A     E+ K G
Sbjct: 607 NLKPDSVTYSTMIYAFLRVRDFSQAFFYHQEMVKSG 642



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/224 (19%), Positives = 95/224 (42%), Gaps = 2/224 (0%)

Query: 210 LLAEWKEL-LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAH 267
           L+AE +E  L+P+   +  ++    +++N       A L + ++  +     Y+ LI A+
Sbjct: 423 LMAEMQETGLKPNAKSYTCIISAYGKQKNMSDMAADAFLKMKKDGIKPTSHSYTALIHAY 482

Query: 268 AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK 327
           +     E A    + M   GI P I T T L+  + +AG+     + ++ +R    +  +
Sbjct: 483 SVSGWHEKAYAAFENMQREGIKPSIETYTALLDAFRRAGDTQTLMKIWKLMRREKVEGTR 542

Query: 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNI 387
             +N+++  +   G  K    ++      G+  +   Y  L+ ++A+ G      ++   
Sbjct: 543 VTFNTLVDGFAKHGYYKEARDVISKFANVGLHPTVMTYNMLMNAYARGGRHSKLPELLEE 602

Query: 388 MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
           M     +P   + + ++ A+ +  D  QA      M++ G   D
Sbjct: 603 MAAHNLKPDSVTYSTMIYAFLRVRDFSQAFFYHQEMVKSGQVMD 646


>gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 597

 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 145/317 (45%), Gaps = 9/317 (2%)

Query: 185 KPITGKCKLITDKILSLEKEEDPSPLLAEWK-ELLQPSRIDWINLLDRLREQNTQLYFKV 243
           KP+     +I D +    +E++   L  E K + + P+ I + +L+    E+  +L+   
Sbjct: 239 KPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLM---WEEAKRLF--- 292

Query: 244 AELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS 303
            E+V   +  Q NV  ++ LID   KE  + +A+ +L+ M + GIVP+++T   L+  + 
Sbjct: 293 NEMV--NQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFC 350

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363
             G+L+ A+E F S+ S G +PD   Y  +I  Y    + +  M L + M+  G     +
Sbjct: 351 LVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVK 410

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
            Y ALL    Q G V  A ++  +M++      L    + +    + G   +A   F+ +
Sbjct: 411 TYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKL 470

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483
                K D  C   +I    K   L+ A  L  +L ++  +P   TY +++    R   +
Sbjct: 471 KSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQV 530

Query: 484 NEAEQLLGKISELGEAP 500
            +A  L  K+ + G  P
Sbjct: 531 VKANILFQKMEKNGCTP 547



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 80/368 (21%), Positives = 161/368 (43%), Gaps = 18/368 (4%)

Query: 220 PSRIDWINLLDRL-REQNTQLYFKVAELVLSEES-----FQTNVRDYSKLIDAHAKENCL 273
           P+ I +  L+  L R  N  +  K+ + +L++ S     F+  V  YS +IDA  K+   
Sbjct: 199 PNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRRE 258

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           ++A  + ++M   G+ P +++ T L+         + AK  F  + + G QP+   +N +
Sbjct: 259 DEARDLFEEMKVQGMTPTVISYTSLM--------WEEAKRLFNEMVNQGVQPNVVTFNVL 310

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           I      G+      L+++MI  GI  +   Y +L+  F   GD+  A ++   M  +  
Sbjct: 311 IDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGC 370

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
           +P +   T+L+  Y +    ++A   ++ M+++G +PD +   +++    +   +  A  
Sbjct: 371 EPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKK 430

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
           L   ++  G       Y + ++ L +   + EA +L  K+         +    L D   
Sbjct: 431 LFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLC 490

Query: 514 RAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAAS 571
           +AG  + A +   F +  +E++ PD   +  +I+    GG +  A  +   ME  G    
Sbjct: 491 KAGKLETAWEL--FEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPD 548

Query: 572 ERLKVALI 579
           +     LI
Sbjct: 549 KITYATLI 556



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 111/257 (43%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           +QP+ + +  L+D L ++   +  K    V+ +     N+  Y+ LI+       L  A 
Sbjct: 300 VQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSAR 359

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
            +   M   G  PD++  TVL++ Y K   ++ A + +  +   G +PD K Y +++   
Sbjct: 360 ELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGL 419

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
              G+      L  +M   GI     IY   L    + G +  A ++ N ++    +  +
Sbjct: 420 FQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDI 479

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
           E    L++   +AG  + A   F+ + +   +PD      MI  + +   + KA  L  +
Sbjct: 480 ECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQK 539

Query: 458 LEKDGFEPGPATYTVLV 474
           +EK+G  P   TY  L+
Sbjct: 540 MEKNGCTPDKITYATLI 556



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 79/380 (20%), Positives = 159/380 (41%), Gaps = 31/380 (8%)

Query: 197 KILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTN 256
           +   L    +P+P L+ +  LL          L +++   +Q+++   ++ LS  S   +
Sbjct: 82  QFFHLMMYSNPTPPLSSFTHLLSG--------LAKIKHY-SQVFYLYNQMRLSGIS--PD 130

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
               + L++     N + +   ++  +   G +PDIVT T L+        + +A   F 
Sbjct: 131 CCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFT 190

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS----GIERSEEIYLALLRSF 372
            ++  G  P+   Y +++      G   + + L   M+      GI     +    +   
Sbjct: 191 RMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIID 250

Query: 373 AQCGDVR--GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
           A C D R   A  +   M+++   PT+ S T L+         ++A+  F+ M+  G +P
Sbjct: 251 ALCKDRREDEARDLFEEMKVQGMTPTVISYTSLMW--------EEAKRLFNEMVNQGVQP 302

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           +      +I    K+  + +A +LL  + + G  P   TY  L++    +  +N A +L 
Sbjct: 303 NVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELF 362

Query: 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL-GFLEAKKEQMGPD--DFERIINGL 547
             +   G  P       L + Y +    ++A++   G L+  K    PD   +  ++ GL
Sbjct: 363 VSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKR---PDVKTYGALLTGL 419

Query: 548 LAGGFLQDAQRVHGLMEAQG 567
             GG + DA+++ G+M+  G
Sbjct: 420 FQGGKVGDAKKLFGVMKVYG 439



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 61/116 (52%), Gaps = 2/116 (1%)

Query: 241 FKVAELV--LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVL 298
           F+  EL   L   + + ++  ++ LID   K   LE A  + +K+ +  + PD+VT  ++
Sbjct: 461 FEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIM 520

Query: 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMI 354
           +H + + G + +A   F+ +  +G  PDK  Y ++I  +  + + +  + L+ MM+
Sbjct: 521 IHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVELLHMMV 576



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 46/113 (40%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y   ++   K  CL +A  +  K+    I  DI     L+    KAG L+ A E FE L 
Sbjct: 447 YGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLP 506

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
               QPD   YN MI  +   GQ      L   M  +G    +  Y  L+R F
Sbjct: 507 QEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGF 559


>gi|222613072|gb|EEE51204.1| hypothetical protein OsJ_32019 [Oryza sativa Japonica Group]
          Length = 615

 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/365 (21%), Positives = 155/365 (42%), Gaps = 11/365 (3%)

Query: 220 PSRIDWINLLDRLREQN-TQLYFKVAELVLSEESFQT--NVRDYSKLIDAHAKEN----- 271
           P    + NLL  L ++N +Q   ++  ++  +    +  +V  Y+ +++   KE      
Sbjct: 161 PDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGIQTKL 220

Query: 272 ---CLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKK 328
               ++ A  +L  M +NG++PD +T   ++H Y  +G    A    + +RS G +P+  
Sbjct: 221 TAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVV 280

Query: 329 VYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIM 388
            Y+S++      G+      + D M   G+E     Y  LL+   + G V  + ++ ++M
Sbjct: 281 TYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLM 340

Query: 389 RIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLL 448
                +P + +   L++    AG  D+A      M+ +G KPD     ++I  Y + + +
Sbjct: 341 VRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRM 400

Query: 449 DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSL 508
           D AL L  E+   G  P   TY +++  L   +    A++L   I++ G          +
Sbjct: 401 DDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNII 460

Query: 509 CDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
                +  +  +AL+    L     Q+    F  +I  LL  G + +A+ +     A G 
Sbjct: 461 LHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGL 520

Query: 569 AASER 573
               R
Sbjct: 521 VPDVR 525



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/260 (20%), Positives = 113/260 (43%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           ++P+ + + +L++ L +       +     +++   + ++  Y  L+  H KE  + ++E
Sbjct: 275 VEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESE 334

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
           ++   M   G+ PDI+T   L+     AG +D A +   S+ S G +PD   Y ++I  Y
Sbjct: 335 KLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGY 394

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
               +    ++L   M++SG+  +   Y  +L+          A ++   +     Q  L
Sbjct: 395 CRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLEL 454

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
            +  +++    +    D+A   F  +     + + R    MI A  K   +D+A +L   
Sbjct: 455 STYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAA 514

Query: 458 LEKDGFEPGPATYTVLVDWL 477
              +G  P   TY+++ + L
Sbjct: 515 HSANGLVPDVRTYSLMAENL 534



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 99/233 (42%), Gaps = 8/233 (3%)

Query: 238 QLYFKVAELVLSEESFQTNVR--------DYSKLIDAHAKENCLEDAERILKKMNENGIV 289
           Q + K   ++ SE+ F   VR         Y+ LID       +++A ++L  M   G+ 
Sbjct: 322 QGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVK 381

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL 349
           PDIVT   L++ Y +   +D A   F+ + S G  P+   YN ++    +  +      L
Sbjct: 382 PDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKEL 441

Query: 350 VDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409
              +  SG +     Y  +L    +      A ++   + + + Q    +  +++ A  +
Sbjct: 442 YVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLK 501

Query: 410 AGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
            G  D+A+  F      G  PD R  + M     ++  L++  +L L +E++G
Sbjct: 502 CGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENG 554



 Score = 46.6 bits (109), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 64/302 (21%), Positives = 119/302 (39%), Gaps = 32/302 (10%)

Query: 288 IVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGM 347
           + P + T  +L+    +AG LD    A  ++   GF+ D   +  ++       +    M
Sbjct: 88  VTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAM 147

Query: 348 SLVDMMIT---------------SGI---ERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389
            +V   +T                G+    RS+E  L LL   A   D RG G   +++ 
Sbjct: 148 DIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEA-LELLHMMA---DDRGGGSPPDVVS 203

Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD 449
                       +  +   QA   D+A    + M++ G  PD     S++  Y       
Sbjct: 204 YNTVLNGFFKEGIQTKLTAQA--MDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPK 261

Query: 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLC 509
           +A+  L ++  DG EP   TY+ L+++L +     EA ++   +++ G  P      +L 
Sbjct: 262 EAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLL 321

Query: 510 DMYARAG--IEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEA 565
             + + G  IE + L    F    +  + PD   +  +I+G    G + +A ++   M +
Sbjct: 322 QGHCKEGRVIESEKL----FDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVS 377

Query: 566 QG 567
            G
Sbjct: 378 VG 379



 Score = 45.8 bits (107), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 43/195 (22%), Positives = 86/195 (44%), Gaps = 6/195 (3%)

Query: 211 LAEWKELLQ----PSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDA 266
           LA +KE++     P+ I +  +L  L         K   + +++   Q  +  Y+ ++  
Sbjct: 404 LALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHG 463

Query: 267 HAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPD 326
             K N  ++A R+ + +    +  +  T  +++    K G +D AK+ F +  ++G  PD
Sbjct: 464 LCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPD 523

Query: 327 KKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITN 386
            + Y+ M    +  G  +    L   M  +G      +  +++R   Q GD+  AG  T 
Sbjct: 524 VRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDITRAG--TY 581

Query: 387 IMRIEEFQPTLESCT 401
           +  I+E   +LE+ T
Sbjct: 582 LFMIDEKHFSLEAST 596



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 37/220 (16%), Positives = 92/220 (41%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           ++  Y  LI+ + + + ++DA  + K+M  +G+ P+I+T  +++           AKE +
Sbjct: 383 DIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELY 442

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
            S+   G Q +   YN ++            + +   +  + ++     +  ++ +  +C
Sbjct: 443 VSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKC 502

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A  +          P + + +L+ E   + G  ++    F  M   G   D R  
Sbjct: 503 GRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRML 562

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
            S++    ++  + +A   L  +++  F    +T + L++
Sbjct: 563 NSIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTASFLLE 602


>gi|255660792|gb|ACU25565.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
          Length = 418

 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 121/262 (46%), Gaps = 8/262 (3%)

Query: 211 LAEWKELLQPSRIDWINLLD---RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAH 267
           + +W   L+PS + +  L++   +L + N     K A   +     Q +V  YS LI+  
Sbjct: 162 ITKWG--LRPSVVSFNTLMNGYIKLGDLNEGFRLKNA---MQASGVQPDVYTYSVLINGL 216

Query: 268 AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK 327
            KE+ ++DA  +  +M + G+VP+ VT T L+  + K G +D A E ++ + S    PD 
Sbjct: 217 CKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDL 276

Query: 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNI 387
             YN++I      G  K    L+D MI  G++  +  Y  L+    + GD+  A +    
Sbjct: 277 ITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKFTYTTLIDGNCKEGDLETAFEYRKR 336

Query: 388 MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447
           M  E  +    + T L+    Q G    A      M+ +G KP+      +I  + KK  
Sbjct: 337 MIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGD 396

Query: 448 LDKALNLLLELEKDGFEPGPAT 469
           +     LL E+++DG++P   T
Sbjct: 397 VWTGSKLLKEMQRDGYKPSVVT 418



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/283 (20%), Positives = 130/283 (45%), Gaps = 3/283 (1%)

Query: 220 PSRIDWINLL--DRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           P+ + + N+L    ++E   +L   V +  +++   + +V  ++ L++ + K   L +  
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFD-AITKWGLRPSVVSFNTLMNGYIKLGDLNEGF 191

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
           R+   M  +G+ PD+ T +VL++   K   +D A   F+ +   G  P+   + ++I  +
Sbjct: 192 RLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGH 251

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
              G+  L M +   M++  +      Y  L+    + GD++ A  + + M ++  +P  
Sbjct: 252 CKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDK 311

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
            + T L++   + GD + A      MI+   + DD    ++I+   ++     A  +L E
Sbjct: 312 FTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLRE 371

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
           +   G +P   TYT++++   +   +    +LL ++   G  P
Sbjct: 372 MLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYKP 414



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/267 (21%), Positives = 114/267 (42%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E  +  ++  ++ L+ +  KE  +  A+ +   + + G+ P +V+   L++ Y K G+L+
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLN 188

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
                  ++++ G QPD   Y+ +I       +      L D M+  G+  +   +  L+
Sbjct: 189 EGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLI 248

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               + G V  A +I   M  +   P L +   L+    + GD  QA+   D MI  G K
Sbjct: 249 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLK 308

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     ++I    K+  L+ A      + K+        YT L+  L +     +AE++
Sbjct: 309 PDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAG 516
           L ++  +G  P       + + + + G
Sbjct: 369 LREMLSVGLKPEIGTYTMIINEFCKKG 395



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 67/319 (21%), Positives = 137/319 (42%), Gaps = 6/319 (1%)

Query: 244 AELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGI-VPDIVTSTVLVHMY 302
           A ++ ++ + ++++  +S LI A+ +   L DA    +   E+   VP      VL H+ 
Sbjct: 53  AAILETKGTLRSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHL- 111

Query: 303 SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE 362
            K          +E     G+      +N ++ ++V  G+ +L  S+ D +   G+  S 
Sbjct: 112 MKLKYFKLVWGFYEENLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSV 171

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
             +  L+  + + GD+    ++ N M+    QP + + ++L+    +    D A   FD 
Sbjct: 172 VSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDE 231

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
           M+  G  P+     ++I  + K   +D A+ +  ++      P   TY  L+  L +   
Sbjct: 232 MLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGD 291

Query: 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--F 540
           + +A+ L+ ++   G  P      +L D   + G  + A +        KE +  DD  +
Sbjct: 292 LKQAQDLIDEMIMKGLKPDKFTYTTLIDGNCKEGDLETAFEYRK--RMIKENIRLDDVAY 349

Query: 541 ERIINGLLAGGFLQDAQRV 559
             +I+GL   G   DA+++
Sbjct: 350 TALISGLCQEGRSVDAEKM 368


>gi|449462543|ref|XP_004149000.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Cucumis sativus]
          Length = 822

 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 117/250 (46%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +++   Q ++  Y+ L+        L+DA ++  +   +G++ +I T  +++  Y KA  
Sbjct: 549 MTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANR 608

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           ++  +  F  L S   + +  VYN +I A+   G     + L++ M + GI  +   Y +
Sbjct: 609 IEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSS 668

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+      G V  A  + + MR E F P +   T L+  Y + G  D A S +  MI   
Sbjct: 669 LIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFN 728

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P+      MI  Y K   ++KA NLL+++++ G  P   TY VL +   +   ++ A 
Sbjct: 729 IHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAF 788

Query: 488 QLLGKISELG 497
           ++  +++  G
Sbjct: 789 KVCDQMATEG 798



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 117/256 (45%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI     E  +E   R+ ++M + GI PDI T   L+      G LD A + ++  +
Sbjct: 526 YNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFK 585

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G   +   Y  M+  Y  A + +   +L + +++  +E +  +Y  ++++  Q G+V 
Sbjct: 586 ASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVA 645

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A Q+   M+ +   P   + + L+      G  + A+   D M + G  P+  C  ++I
Sbjct: 646 AALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALI 705

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             Y K   +D A +  LE+      P   TYTV++D   +L  + +A  LL K+ E G  
Sbjct: 706 GGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIV 765

Query: 500 PPFKIQVSLCDMYARA 515
           P       L + + +A
Sbjct: 766 PDVVTYNVLTNGFCKA 781



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 68/309 (22%), Positives = 130/309 (42%), Gaps = 4/309 (1%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           L +A RI+K+M E G+  D +T   L+  +   G ++      E +   G QPD   YN 
Sbjct: 504 LPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNF 563

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           ++    N G+    + L D    SG+  +   Y  ++  + +   +     + N +  ++
Sbjct: 564 LLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKK 623

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
            +       ++++A+ Q G+   A    + M   G  P+    +S+I       L++ A 
Sbjct: 624 MELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAK 683

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
           +L+ E+ K+GF P    YT L+    +L  ++ AE    ++      P       + D Y
Sbjct: 684 HLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGY 743

Query: 513 ARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAA 570
            + G  +KA   L  ++ K+  + PD   +  + NG      + +A +V   M  +G   
Sbjct: 744 CKLGNMEKANNLL--IKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPV 801

Query: 571 SERLKVALI 579
            E     L+
Sbjct: 802 DEITYTTLV 810



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 58/265 (21%), Positives = 106/265 (40%), Gaps = 8/265 (3%)

Query: 222 RIDWINLLDRL----REQNTQLYFKVAE---LVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           R +W    D L      Q   L F  A     +L+ +    +++  + L+ +  K N  E
Sbjct: 167 RFEWTQAFDLLIHVYSTQFRNLGFSCAVDVFYLLARKGTFPSLKTCNFLLSSLVKANEFE 226

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
               + + M+E G  PD+ + T +++   K G ++ A E F  +   G  P+   YN +I
Sbjct: 227 KCCEVFRVMSE-GACPDVFSFTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCII 285

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
                 G+      L + M   G++ + + Y AL+    +         + + M    F 
Sbjct: 286 NGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHVLDEMIGSGFN 345

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P +     L++ Y + G+ + A    D MI     P      S++  + K + ++ A N 
Sbjct: 346 PNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENA 405

Query: 455 LLELEKDGFEPGPATYTVLVDWLGR 479
           L E+   G    P     +V WL +
Sbjct: 406 LEEILSSGLSIHPDNCYSVVHWLCK 430



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 55/125 (44%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + +E F  NV  Y+ LI  + K   ++ AE    +M    I P+  T TV++  Y K GN
Sbjct: 689 MRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGN 748

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +++A      ++  G  PD   YN +   +  A        + D M T G+   E  Y  
Sbjct: 749 MEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTT 808

Query: 368 LLRSF 372
           L+  +
Sbjct: 809 LVHGW 813



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/201 (20%), Positives = 86/201 (42%), Gaps = 10/201 (4%)

Query: 186 PITGKCKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRL-----REQNTQLY 240
           P    C  +   ++   + E    +     E   P    + N+++ L      E   +L+
Sbjct: 207 PSLKTCNFLLSSLVKANEFEKCCEVFRVMSEGACPDVFSFTNVINALCKGGKMENAIELF 266

Query: 241 FKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
            K+ +L +S      NV  Y+ +I+   +   L++A  + +KM   G+ P++ T   L++
Sbjct: 267 MKMEKLGISP-----NVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALIN 321

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
              K    D+     + +   GF P+  V+N++I  Y   G  +  + + D+MI+  I  
Sbjct: 322 GLIKLNFFDKVNHVLDEMIGSGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITP 381

Query: 361 SEEIYLALLRSFAQCGDVRGA 381
           +     +L++ F +   +  A
Sbjct: 382 TSVTLYSLMQGFCKSDQIEHA 402


>gi|12321310|gb|AAG50731.1|AC079041_24 PPR-repeat protein, putative [Arabidopsis thaliana]
          Length = 690

 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/344 (22%), Positives = 152/344 (44%), Gaps = 7/344 (2%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E  F+  +   +K++   + +  +E A R+L  + + G  P++VT   L++ + K G +D
Sbjct: 245 ERGFRVGIVSCNKVLKGLSVDQ-IEVASRLLSLVLDCGPAPNVVTFCTLINGFCKRGEMD 303

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
           RA + F+ +   G +PD   Y+++I  Y  AG   +G  L    +  G++    ++ + +
Sbjct: 304 RAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTI 363

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
             + + GD+  A  +   M  +   P + + T+L++   Q G   +A   +  +++ G +
Sbjct: 364 DVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGME 423

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           P     +S+I  + K   L     L  ++ K G+ P    Y VLVD L +  L+  A + 
Sbjct: 424 PSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRF 483

Query: 490 LGKISELGEAPPFKIQV--SLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
              +  LG++    + V  SL D + R     +AL+    +     +     F  ++   
Sbjct: 484 --SVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVS 541

Query: 548 LAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQPT 591
           +  G L++A  +   M   G          LI +  F +  +PT
Sbjct: 542 IMEGRLEEALFLFFRMFKMGLEPDALAYCTLIDA--FCKHMKPT 583



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/263 (21%), Positives = 108/263 (41%), Gaps = 35/263 (13%)

Query: 220 PSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERI 279
           P  + +  L+D L +Q   L+     + +  +S + NV  ++ LID   + N  ++A ++
Sbjct: 459 PDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKV 518

Query: 280 LKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339
            + M   GI PD+ T T ++ +    G L+ A   F  +   G +PD   Y ++I A+  
Sbjct: 519 FRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYCTLIDAFCK 578

Query: 340 AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLES 399
             +P +G+ L D+M     +R+                              +    +  
Sbjct: 579 HMKPTIGLQLFDLM-----QRN------------------------------KISADIAV 603

Query: 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELE 459
           C +++    +    + A   F+ +I    +PD     +MI  Y     LD+A  +   L+
Sbjct: 604 CNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLK 663

Query: 460 KDGFEPGPATYTVLVDWLGRLQL 482
              F P   T T+L+  L ++ +
Sbjct: 664 VTPFGPNTVTLTILIHVLCKIMI 686



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 51/246 (20%), Positives = 105/246 (42%), Gaps = 1/246 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ LI    ++  + +A  +  ++ + G+ P IVT + L+  + K GNL      +
Sbjct: 390 NVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALY 449

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E +   G+ PD  +Y  ++      G     M     M+   I  +  ++ +L+  + + 
Sbjct: 450 EDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRL 509

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
                A ++  +M I   +P + + T ++      G  ++A   F  M ++G +PD    
Sbjct: 510 NRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAY 569

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I A+ K       L L   ++++      A   V++  L +   I +A +    + E
Sbjct: 570 CTLIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIE 629

Query: 496 LGEAPP 501
            G+  P
Sbjct: 630 -GKMEP 634



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 74/363 (20%), Positives = 133/363 (36%), Gaps = 90/363 (24%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESF--------QTNVRDYSKLIDAHAK 269
           ++P  I +  L+D         YFK   L +  + F        + +V  +S  ID + K
Sbjct: 317 IEPDLIAYSTLIDG--------YFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVK 368

Query: 270 ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKV 329
              L  A  + K+M   GI P++VT T+L+    + G +  A   +  +   G +P    
Sbjct: 369 SGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVT 428

Query: 330 YNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG--------DVRGA 381
           Y+S+I  +   G  + G +L + MI  G      IY  L+   ++ G         V+  
Sbjct: 429 YSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKML 488

Query: 382 GQ---------------------------ITNIMRIEEFQPTLESCTLLVEAYGQAGDPD 414
           GQ                           +  +M I   +P + + T ++      G  +
Sbjct: 489 GQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLE 548

Query: 415 QARSNFDYMIRLGHKPDDRCTASMIAAYGKK----------------------NLLDKAL 452
           +A   F  M ++G +PD     ++I A+ K                        + +  +
Sbjct: 549 EALFLFFRMFKMGLEPDALAYCTLIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVI 608

Query: 453 NLLLELEK-------------DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
           +LL +  +                EP   TY  ++     L+ ++EAE    +I EL + 
Sbjct: 609 HLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAE----RIFELLKV 664

Query: 500 PPF 502
            PF
Sbjct: 665 TPF 667


>gi|359490053|ref|XP_003634022.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30825,
           chloroplastic-like [Vitis vinifera]
 gi|297745081|emb|CBI38673.3| unnamed protein product [Vitis vinifera]
          Length = 900

 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 127/263 (48%), Gaps = 2/263 (0%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           Q N + Y+ LI A  K+  +E   +  + M ENG+ P++ T  +++ +Y K  N+  ++ 
Sbjct: 205 QVNFQVYNTLIYACYKQGHVELGTKWFRLMLENGVRPNVATFGMVMSLYQKGWNVADSEY 264

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
           AF  +RS G    +  Y++MI  Y           ++D +    +  + E +L LL +++
Sbjct: 265 AFSQMRSFGITC-QSAYSAMITIYTRMSLYDKAEEVIDFIQEDKVILNLENWLVLLNAYS 323

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           Q G ++ A ++   M+   F P + +  +L+  YG+A + D A+  F  +  +G +PD+ 
Sbjct: 324 QQGKLQEAERVLFSMQNAGFSPNIVAYNMLITGYGKASNMDAAQHIFRNLKNVGLEPDES 383

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
              SMI  +G+     +A     EL++ GF+P  +    +++   +     +A + L  +
Sbjct: 384 TYRSMIEGWGRAENYKEAEWYYNELKRLGFKPNSSNLYTMINLQAKYADGEDAARTLDDM 443

Query: 494 SELGEAPPFKIQVSLCDMYARAG 516
             +G      +  +L   Y RAG
Sbjct: 444 KRIG-CQYSSVLGTLLQAYERAG 465



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 159/340 (46%), Gaps = 25/340 (7%)

Query: 239 LYFKVAELV--LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTST 296
           LY K  E++  + E+    N+ ++  L++A++++  L++AER+L  M   G  P+IV   
Sbjct: 292 LYDKAEEVIDFIQEDKVILNLENWLVLLNAYSQQGKLQEAERVLFSMQNAGFSPNIVAYN 351

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           +L+  Y KA N+D A+  F +L++ G +PD+  Y SMI  +  A   K      + +   
Sbjct: 352 MLITGYGKASNMDAAQHIFRNLKNVGLEPDESTYRSMIEGWGRAENYKEAEWYYNELKRL 411

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
           G + +      ++   A+  D   A +  + M+    Q +    TLL +AY +AG  D+ 
Sbjct: 412 GFKPNSSNLYTMINLQAKYADGEDAARTLDDMKRIGCQYSSVLGTLL-QAYERAGRIDRV 470

Query: 417 -----RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELE-KDGFEPGPATY 470
                 S ++Y++      +    + ++ AY K  L+D A+ +L E + KD        +
Sbjct: 471 PLILKGSFYEYVL-----VNQTSCSILVMAYVKHCLVDDAIKVLQEKQWKDTIFEDNLYH 525

Query: 471 TVLVDW--LGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFL 528
            V+     LGRL+    A ++  ++    + P   I  ++ D+Y+  G    A     +L
Sbjct: 526 LVICSCKELGRLE---NAVKIYSQMP--NKKPNLHIMCTMIDIYSTLGRFSDAENL--YL 578

Query: 529 EAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQ 566
           + K  ++  D   F  ++   +  G L+DA  V   M+ Q
Sbjct: 579 KLKSSEISLDMIAFSIVVRMYVKSGSLKDACSVLETMDEQ 618



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 120/248 (48%), Gaps = 10/248 (4%)

Query: 228 LLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENG 287
           +LD+L++    LY+++ +  ++ +S       Y+ +I+  A+   +++  R+  +M  +G
Sbjct: 640 MLDKLQD----LYYRILKTGVTWDS-----EMYNCVINCCARALPVDELSRLFDEMLLHG 690

Query: 288 IVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGM 347
             P+ +T  V++ +Y K+    +A++     R  G   D   YN++I AY  +   K  +
Sbjct: 691 FAPNTITLNVMLDVYGKSRLFKKARKVLWLARKRGL-VDVISYNTIIAAYGQSKDLKKML 749

Query: 348 SLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAY 407
           S V  M  +G   S E+Y  +L S+ + G +     +   M+         +  +++  Y
Sbjct: 750 STVRQMQFNGFSVSLEVYNCMLDSYGKEGQIESFRSVLRRMKESSCASDHYTYNIMINIY 809

Query: 408 GQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGP 467
           G+ G  ++  +    +   G  PD     ++I AYG   +++ A+ L+ E+ ++G +P  
Sbjct: 810 GEQGWIEEVANVLTELKESGLGPDLCSYNTLIKAYGIAGMVEDAVVLVKEMRENGIQPDR 869

Query: 468 ATYTVLVD 475
            TY  L++
Sbjct: 870 ITYINLIN 877



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 76/334 (22%), Positives = 141/334 (42%), Gaps = 14/334 (4%)

Query: 218 LQPSRIDWINLLDRLRE-QNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           +  + ID  + L R  + +N  L  K +E+ L   +F   VR Y        K   L+DA
Sbjct: 556 IMCTMIDIYSTLGRFSDAENLYLKLKSSEISLDMIAFSIVVRMY-------VKSGSLKDA 608

Query: 277 ERILKKMNEN-GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
             +L+ M+E   IVPDI     ++ +Y + G LD+ ++ +  +   G   D ++YN +I 
Sbjct: 609 CSVLETMDEQKNIVPDIYLFCDMLRIYQQCGMLDKLQDLYYRILKTGVTWDSEMYNCVIN 668

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
               A        L D M+  G   +      +L  + +    + A ++  + R      
Sbjct: 669 CCARALPVDELSRLFDEMLLHGFAPNTITLNVMLDVYGKSRLFKKARKVLWLARKRGLVD 728

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
            + S   ++ AYGQ+ D  +  S    M   G          M+ +YGK+  ++   ++L
Sbjct: 729 VI-SYNTIIAAYGQSKDLKKMLSTVRQMQFNGFSVSLEVYNCMLDSYGKEGQIESFRSVL 787

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
             +++        TY ++++  G    I E   +L ++ E G  P      +L   Y  A
Sbjct: 788 RRMKESSCASDHYTYNIMINIYGEQGWIEEVANVLTELKESGLGPDLCSYNTLIKAYGIA 847

Query: 516 GIEKKALQALGFLEAKKEQMGPD--DFERIINGL 547
           G+ + A+  +   E ++  + PD   +  +IN L
Sbjct: 848 GMVEDAVVLVK--EMRENGIQPDRITYINLINAL 879



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/211 (21%), Positives = 92/211 (43%), Gaps = 1/211 (0%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F  N    + ++D + K    + A ++L    + G+V D+++   ++  Y ++ +L +  
Sbjct: 691 FAPNTITLNVMLDVYGKSRLFKKARKVLWLARKRGLV-DVISYNTIIAAYGQSKDLKKML 749

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
                ++ +GF    +VYN M+ +Y   GQ +   S++  M  S        Y  ++  +
Sbjct: 750 STVRQMQFNGFSVSLEVYNCMLDSYGKEGQIESFRSVLRRMKESSCASDHYTYNIMINIY 809

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + G +     +   ++     P L S   L++AYG AG  + A      M   G +PD 
Sbjct: 810 GEQGWIEEVANVLTELKESGLGPDLCSYNTLIKAYGIAGMVEDAVVLVKEMRENGIQPDR 869

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGF 463
               ++I A  K +   +A+   L +++ G 
Sbjct: 870 ITYINLINALRKNDEFLEAVKWSLWMKQMGL 900



 Score = 39.7 bits (91), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 47/222 (21%), Positives = 91/222 (40%), Gaps = 18/222 (8%)

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
           G E S E   A+L+   +C D +       +    + +  + +  L +   G+ GD D A
Sbjct: 132 GPELSVERCNAILKGLERCSDSKTMKFFEWMRENGKLEGNVSAYNLALRVLGRRGDWDAA 191

Query: 417 RSNFDYMIRLGHKPDDRCTAS-------MIAAY--GKKNLLDKALNLLLELEKDGFEPGP 467
            +    M       D  C  +       + A Y  G   L  K   L+LE   +G  P  
Sbjct: 192 ETMIWEM-----NGDSDCQVNFQVYNTLIYACYKQGHVELGTKWFRLMLE---NGVRPNV 243

Query: 468 ATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGF 527
           AT+ +++    +   + ++E    ++   G         ++  +Y R  +  KA + + F
Sbjct: 244 ATFGMVMSLYQKGWNVADSEYAFSQMRSFGITCQSAYS-AMITIYTRMSLYDKAEEVIDF 302

Query: 528 LEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
           ++  K  +  +++  ++N     G LQ+A+RV   M+  GF+
Sbjct: 303 IQEDKVILNLENWLVLLNAYSQQGKLQEAERVLFSMQNAGFS 344


>gi|224107129|ref|XP_002314384.1| predicted protein [Populus trichocarpa]
 gi|222863424|gb|EEF00555.1| predicted protein [Populus trichocarpa]
          Length = 764

 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 88/382 (23%), Positives = 171/382 (44%), Gaps = 11/382 (2%)

Query: 192 KLITDKILSLEKEEDPSPLL--AEWKELLQPSRIDWINLLDRLREQN-TQLYFKVAELVL 248
            ++ D++   +K ++   +    ++K +  P    + +L+D L +Q      +++ E +L
Sbjct: 309 NIMIDRLCKAQKLDEACSIFEGMDYK-VCSPDGATFCSLIDGLGKQGRVDDAYRIYERML 367

Query: 249 SEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNL 308
             +    NV  Y+ LI    K +  ED  ++ K+M  +G  PD++     +    KAG  
Sbjct: 368 DADQIP-NVVVYTSLIRNFFKCDRKEDGHKMYKEMMRSGCSPDLMLLNTYMDCVFKAGET 426

Query: 309 DRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLAL 368
           ++ +  FE +++ GF PD + Y+ +I + V AG  +    L   M   G       Y  +
Sbjct: 427 EKGRALFEEIKARGFLPDTRSYSILIHSLVKAGFARETYELYYAMKDQGCVLDTRAYNTV 486

Query: 369 LRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH 428
           +  F + G V  A Q+   M+     PT+ +   +V+   +    D+A   F+     G 
Sbjct: 487 IDGFCKSGKVNKAYQLLEEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSNGI 546

Query: 429 KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQ 488
           + +    +S+I  +GK   +D+A  ++ E+ + G  P   T+  L+D L + + INEA  
Sbjct: 547 ELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEEINEALV 606

Query: 489 LLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFL-EAKKEQMGPD--DFERIIN 545
               + +L   P    Q++ C +       +K  +A  F  E +K+ + P+   +  +I+
Sbjct: 607 CFQSMKDLKCTPN---QITYCILINGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTAMIS 663

Query: 546 GLLAGGFLQDAQRVHGLMEAQG 567
           GL   G +  A  +     A G
Sbjct: 664 GLAKSGNVAQASSLFERFRASG 685



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 153/346 (44%), Gaps = 30/346 (8%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +   +F  ++  Y+  ID   K   ++ A +   +M  NG+VPD VT T ++ +  KA  
Sbjct: 122 MKSNTFDADIVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKANR 181

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           LD A E FE +  +   P    YN+MIM Y +AG+     SL++     G   S   Y  
Sbjct: 182 LDEAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQRAKGCIPSVVAYNC 241

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           +L    + G    A +I   M+  +  P L +  +++    +AG+ + A    D M   G
Sbjct: 242 ILTCLGKKGKTDKALRIFEEMK-RDAMPNLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAG 300

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P+ R    MI    K   LD+A ++   ++     P  AT+  L+D LG+   +++A 
Sbjct: 301 LFPNVRTINIMIDRLCKAQKLDEACSIFEGMDYKVCSPDGATFCSLIDGLGKQGRVDDAY 360

Query: 488 QLLGKISELGEAPPFKIQVSL------CD-------MY---ARAGIEKKALQALGFLE-- 529
           ++  ++ +  + P   +  SL      CD       MY    R+G     +    +++  
Sbjct: 361 RIYERMLDADQIPNVVVYTSLIRNFFKCDRKEDGHKMYKEMMRSGCSPDLMLLNTYMDCV 420

Query: 530 --AKKEQMGPDDFERIINGLLAGGFLQDAQR----VHGLMEAQGFA 569
             A + + G   FE I     A GFL D +     +H L++A GFA
Sbjct: 421 FKAGETEKGRALFEEI----KARGFLPDTRSYSILIHSLVKA-GFA 461



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 128/299 (42%), Gaps = 5/299 (1%)

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
           E+IL +M+  G  P   T   LV    K+  L  A +  + +R   F+P    Y ++I A
Sbjct: 11  EQILGEMSIAGFGPTNYTCVELVASCVKSRKLIEAFDLLQMMRHFKFRPAFSAYTTLIGA 70

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
               G+    ++L + M   G E +  +   L+R F++ G V  A  + + M+   F   
Sbjct: 71  LSEVGESDRMLALFNQMQELGYEVNVHLLTTLIRVFSREGRVDAALSLLDEMKSNTFDAD 130

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           +    + ++ +G+ G  D A   F  M   G  PDD    SM+    K N LD+A+ +  
Sbjct: 131 IVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKANRLDEAVEIFE 190

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
           ++E++   P    Y  ++   G     +EA  LL +    G  P       +     + G
Sbjct: 191 QMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQRAKGCIPSVVAYNCILTCLGKKG 250

Query: 517 IEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASER 573
              KAL+   F E K++ M P+   +  II  L   G ++ A +V   M+  G   + R
Sbjct: 251 KTDKALRI--FEEMKRDAM-PNLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPNVR 306



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 104/248 (41%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F  + R YS LI +  K     +   +   M + G V D      ++  + K+G +++A 
Sbjct: 441 FLPDTRSYSILIHSLVKAGFARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAY 500

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           +  E +++ G  P    Y S++       +      L +   ++GIE ++ IY +L+  F
Sbjct: 501 QLLEEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGF 560

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + G V  A  +   M  +   P + +   L++   +A + ++A   F  M  L   P+ 
Sbjct: 561 GKVGRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQSMKDLKCTPNQ 620

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
                +I    K    +KA     E++K G +P   TYT ++  L +   + +A  L  +
Sbjct: 621 ITYCILINGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTAMISGLAKSGNVAQASSLFER 680

Query: 493 ISELGEAP 500
               G  P
Sbjct: 681 FRASGGIP 688



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 135/328 (41%), Gaps = 21/328 (6%)

Query: 195 TDKILSL--EKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEES 252
           TDK L +  E + D  P L        P+    I +L   +  N +  FKV +  + E  
Sbjct: 252 TDKALRIFEEMKRDAMPNL--------PTYNIIIGML--CKAGNVEAAFKVRD-AMKEAG 300

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
              NVR  + +ID   K   L++A  I + M+     PD  T   L+    K G +D A 
Sbjct: 301 LFPNVRTINIMIDRLCKAQKLDEACSIFEGMDYKVCSPDGATFCSLIDGLGKQGRVDDAY 360

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
             +E +      P+  VY S+I  +    + + G  +   M+ SG        L LL ++
Sbjct: 361 RIYERMLDADQIPNVVVYTSLIRNFFKCDRKEDGHKMYKEMMRSGCSPD----LMLLNTY 416

Query: 373 AQC----GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH 428
             C    G+      +   ++   F P   S ++L+ +  +AG   +    +  M   G 
Sbjct: 417 MDCVFKAGETEKGRALFEEIKARGFLPDTRSYSILIHSLVKAGFARETYELYYAMKDQGC 476

Query: 429 KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQ 488
             D R   ++I  + K   ++KA  LL E++  G  P   TY  +VD L ++  ++EA  
Sbjct: 477 VLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAYM 536

Query: 489 LLGKISELGEAPPFKIQVSLCDMYARAG 516
           L  +    G      I  SL D + + G
Sbjct: 537 LFEEAKSNGIELNQVIYSSLIDGFGKVG 564



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 70/314 (22%), Positives = 135/314 (42%), Gaps = 13/314 (4%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERIL---KKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           F+     Y+ LI A ++   + +++R+L    +M E G   ++   T L+ ++S+ G +D
Sbjct: 57  FRPAFSAYTTLIGALSE---VGESDRMLALFNQMQELGYEVNVHLLTTLIRVFSREGRVD 113

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A    + ++S+ F  D  +YN  I  +   G+  +       M  +G+   +  Y +++
Sbjct: 114 AALSLLDEMKSNTFDADIVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMM 173

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               +   +  A +I   M      P   +   ++  YG AG  D+A S  +     G  
Sbjct: 174 GVLCKANRLDEAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQRAKGCI 233

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           P       ++   GKK   DKAL +  E+++D   P   TY +++  L +   +  A ++
Sbjct: 234 PSVVAYNCILTCLGKKGKTDKALRIFEEMKRDAM-PNLPTYNIIIGMLCKAGNVEAAFKV 292

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD---FERIING 546
              + E G  P  +    + D   +A   +K  +A    E    ++   D   F  +I+G
Sbjct: 293 RDAMKEAGLFPNVRTINIMIDRLCKA---QKLDEACSIFEGMDYKVCSPDGATFCSLIDG 349

Query: 547 LLAGGFLQDAQRVH 560
           L   G + DA R++
Sbjct: 350 LGKQGRVDDAYRIY 363



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/297 (21%), Positives = 125/297 (42%), Gaps = 5/297 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  Y+ +I    K   +E A ++   M E G+ P++ T  +++    KA  LD A   F
Sbjct: 269 NLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPNVRTINIMIDRLCKAQKLDEACSIF 328

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E +      PD   + S+I      G+      + + M+ +    +  +Y +L+R+F +C
Sbjct: 329 EGMDYKVCSPDGATFCSLIDGLGKQGRVDDAYRIYERMLDADQIPNVVVYTSLIRNFFKC 388

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
                  ++   M      P L      ++   +AG+ ++ R+ F+ +   G  PD R  
Sbjct: 389 DRKEDGHKMYKEMMRSGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKARGFLPDTRSY 448

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
           + +I +  K     +   L   ++  G       Y  ++D   +   +N+A QLL ++  
Sbjct: 449 SILIHSLVKAGFARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKT 508

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
           +G  P      S+ D  A+  I++     + F EAK   +   +  ++I   L  GF
Sbjct: 509 MGHHPTVVTYGSVVDGLAK--IDRLDEAYMLFEEAKSNGI---ELNQVIYSSLIDGF 560



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 121/280 (43%), Gaps = 1/280 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           + R Y+ +ID   K   +  A ++L++M   G  P +VT   +V   +K   LD A   F
Sbjct: 479 DTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLF 538

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E  +S+G + ++ +Y+S+I  +   G+      +++ M+  G+  +   +  LL    + 
Sbjct: 539 EEAKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKA 598

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
            ++  A      M+  +  P   +  +L+    +    ++A   +  M + G KP+    
Sbjct: 599 EEINEALVCFQSMKDLKCTPNQITYCILINGLCKVRKFNKAFVFWQEMQKQGLKPNTITY 658

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            +MI+   K   + +A +L       G  P  A+Y  +++ L       +A QL  +   
Sbjct: 659 TAMISGLAKSGNVAQASSLFERFRASGGIPDSASYNAMIEGLSIANRALDAYQLFEETRL 718

Query: 496 LGEAPPFKIQVSLCDMYARA-GIEKKALQALGFLEAKKEQ 534
            G +   K  V+L D   +A  +E+ A+      E  K Q
Sbjct: 719 KGCSIHTKTCVALLDALHKAECLEQAAIVGAVLRETAKSQ 758



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/292 (19%), Positives = 123/292 (42%), Gaps = 1/292 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ ++    K+   + A RI ++M  + + P++ T  +++ M  KAGN++ A +  
Sbjct: 235 SVVAYNCILTCLGKKGKTDKALRIFEEMKRDAM-PNLPTYNIIIGMLCKAGNVEAAFKVR 293

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           ++++  G  P+ +  N MI     A +     S+ + M           + +L+    + 
Sbjct: 294 DAMKEAGLFPNVRTINIMIDRLCKAQKLDEACSIFEGMDYKVCSPDGATFCSLIDGLGKQ 353

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G V  A +I   M   +  P +   T L+  + +    +     +  M+R G  PD    
Sbjct: 354 GRVDDAYRIYERMLDADQIPNVVVYTSLIRNFFKCDRKEDGHKMYKEMMRSGCSPDLMLL 413

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            + +    K    +K   L  E++  GF P   +Y++L+  L +     E  +L   + +
Sbjct: 414 NTYMDCVFKAGETEKGRALFEEIKARGFLPDTRSYSILIHSLVKAGFARETYELYYAMKD 473

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
            G     +   ++ D + ++G   KA Q L  ++          +  +++GL
Sbjct: 474 QGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVTYGSVVDGL 525



 Score = 45.4 bits (106), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 41/204 (20%), Positives = 86/204 (42%), Gaps = 6/204 (2%)

Query: 213 EWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC 272
           E  +++  S ID    + R+ E     Y  + E++  ++    NV  ++ L+D   K   
Sbjct: 547 ELNQVIYSSLIDGFGKVGRVDEA----YLVMEEMM--QKGLTPNVYTWNCLLDGLVKAEE 600

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           + +A    + M +    P+ +T  +L++   K    ++A   ++ ++  G +P+   Y +
Sbjct: 601 INEALVCFQSMKDLKCTPNQITYCILINGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTA 660

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           MI     +G      SL +    SG       Y A++   +       A Q+    R++ 
Sbjct: 661 MISGLAKSGNVAQASSLFERFRASGGIPDSASYNAMIEGLSIANRALDAYQLFEETRLKG 720

Query: 393 FQPTLESCTLLVEAYGQAGDPDQA 416
                ++C  L++A  +A   +QA
Sbjct: 721 CSIHTKTCVALLDALHKAECLEQA 744


>gi|194705572|gb|ACF86870.1| unknown [Zea mays]
          Length = 120

 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/107 (44%), Positives = 73/107 (68%), Gaps = 1/107 (0%)

Query: 472 VLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK 531
           +L+DWL  LQL+ EAEQ + KI  LGE  P ++ V L DMYA++  E KA ++L  LE K
Sbjct: 1   MLLDWLSMLQLVPEAEQFVQKIKNLGE-EPIEVHVFLADMYAKSSQEDKARRSLKILEEK 59

Query: 532 KEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVAL 578
           K+ +  D FER+I GL+ GGF ++A + + +M++ GF  S+ ++VA+
Sbjct: 60  KKLLKSDQFERVIRGLVDGGFSEEANKFYKMMKSCGFEPSKTIEVAV 106


>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
 gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 114/255 (44%), Gaps = 4/255 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + +E    NV  ++ LIDA  K   +E+A  +LK M + G  PD  T   L+  +   G 
Sbjct: 299 MVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGR 358

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D A++ F S+ S G + D   YN +I  Y  +G+      L   M+   I  +   Y  
Sbjct: 359 IDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNT 418

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCT--LLVEAYGQAGDPDQARSNFDYMIR 425
           LL    + G VR A  +   M++ +  P  ESCT  +L++   +     +A   F Y+  
Sbjct: 419 LLTGLFREGKVRDAWNLFGEMKVHDLTP--ESCTYNILLDGLCKNNHLSEAMELFHYLEN 476

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
              +P  +    +I    K   ++ A  L   L  +G EP   TYTV++  L +   +  
Sbjct: 477 HDFQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLEN 536

Query: 486 AEQLLGKISELGEAP 500
           A+ L   + E G AP
Sbjct: 537 AKDLFLGMEEKGCAP 551



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 82/361 (22%), Positives = 156/361 (43%), Gaps = 10/361 (2%)

Query: 219 QPSRIDWINLLDRL-REQNTQLYFKVAELVLSEE-----SFQTNVRDYSKLIDAHAKENC 272
           +P+ + +  LL+ L    NT L  K+ E +L+       + + N+  Y  +ID+  K+  
Sbjct: 194 RPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDGL 253

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           ++  + +  +M   GI PD+V  + ++H     G  + AK  F  +   G  P+   +N 
Sbjct: 254 IDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNV 313

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I A   AG+ +    L+ +MI  G       Y  L+  F   G +  A  +   M  + 
Sbjct: 314 LIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKG 373

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
            +    S  +L+  Y ++G   +A+  +  M+     P      +++    ++  +  A 
Sbjct: 374 IETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAW 433

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
           NL  E++     P   TY +L+D L +   ++EA +L   +      P  +I   L D  
Sbjct: 434 NLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGL 493

Query: 513 ARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAA 570
            +A   K  +    F     E + P+   +  +I+GL   G L++A+ +   ME +G A 
Sbjct: 494 CKA--RKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAP 551

Query: 571 S 571
           +
Sbjct: 552 N 552



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 122/285 (42%), Gaps = 4/285 (1%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEES--FQTNVRDYSKLIDAHAKENCLED 275
           ++P+ + +  ++D L +    L  K  EL L  +      +V  YS +I         E 
Sbjct: 234 IKPNLVCYCTIIDSLCKDG--LIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEG 291

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A+ +  +M + G+ P++VT  VL+    KAG ++ A    + +   G  PD   YN++I 
Sbjct: 292 AKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLID 351

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
            +   G+      L   M + GIE     Y  L+  + + G +  A ++   M  +E  P
Sbjct: 352 GFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMP 411

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
           T+ +   L+    + G    A + F  M      P+      ++    K N L +A+ L 
Sbjct: 412 TVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELF 471

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
             LE   F+P    +  L+D L + + I  A +L  ++S  G  P
Sbjct: 472 HYLENHDFQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEP 516



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 106/241 (43%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LID    E  ++DA  +   M   GI  D V+  VL++ Y K+G +  AK+ +  + 
Sbjct: 346 YNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMM 405

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
                P    YN+++      G+ +   +L   M    +      Y  LL    +   + 
Sbjct: 406 CKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLS 465

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++ + +   +FQP+++    L++   +A   + AR  F+ +   G +P+      MI
Sbjct: 466 EAMELFHYLENHDFQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMI 525

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
               K   L+ A +L L +E+ G  P   T+  L+    +   + +  +LL +++E   +
Sbjct: 526 HGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFS 585

Query: 500 P 500
           P
Sbjct: 586 P 586



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/332 (22%), Positives = 138/332 (41%), Gaps = 10/332 (3%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N   ++ L+      + + +A  +L+KM   G  P++VT   L++     GN   A +  
Sbjct: 161 NTVTFTSLVKGLCLGSRISEATGLLRKMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLH 220

Query: 316 ESLR--SHGF----QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
           E +   + GF    +P+   Y ++I +    G    G  L   M   GI      Y +++
Sbjct: 221 EEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSII 280

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
                 G   GA  + N M  E   P + +  +L++A  +AG  ++A      MI+ G  
Sbjct: 281 HGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGES 340

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     ++I  +  +  +D A +L + +E  G E    +Y VL++   +   + EA++L
Sbjct: 341 PDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKL 400

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGL 547
             ++      P      +L     R G  + A    G  E K   + P+   +  +++GL
Sbjct: 401 YREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFG--EMKVHDLTPESCTYNILLDGL 458

Query: 548 LAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
                L +A  +   +E   F  S ++   LI
Sbjct: 459 CKNNHLSEAMELFHYLENHDFQPSIQIFNCLI 490



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 65/310 (20%), Positives = 123/310 (39%), Gaps = 6/310 (1%)

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           +  ++ L+ A AK     D   + K+M+  G+ PD +T  +L++ Y     +D       
Sbjct: 92  ISSFNTLLGAVAKIKRYFDVISLYKRMSLIGLAPDFITLNILINCYCNLNKVDFGLAVLG 151

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
            +   G  P+   + S++       +      L+  M+  G   +   Y  LL      G
Sbjct: 152 EMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMVRMGYRPNVVTYGTLLNGLCMTG 211

Query: 377 DVRGAGQITNIMRIEE------FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
           +   A ++   M           +P L     ++++  + G  D+ +  F  M   G  P
Sbjct: 212 NTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISP 271

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           D    +S+I         + A  L  E+  +G  P   T+ VL+D L +   + EA  LL
Sbjct: 272 DVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLL 331

Query: 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAG 550
             + + GE+P      +L D +   G    A      +E+K  +     +  +ING    
Sbjct: 332 KLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKS 391

Query: 551 GFLQDAQRVH 560
           G + +A++++
Sbjct: 392 GRMVEAKKLY 401



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/322 (21%), Positives = 129/322 (40%), Gaps = 6/322 (1%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKM-NENG-----IVPDIVTSTVLVHMYSKAG 306
           ++ NV  Y  L++          A ++ ++M N NG     I P++V    ++    K G
Sbjct: 193 YRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDG 252

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            +D+ KE F  ++  G  PD   Y+S+I    + G+ +    L + M+  G+  +   + 
Sbjct: 253 LIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFN 312

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+ +  + G +  A  +  +M      P   +   L++ +   G  D AR  F  M   
Sbjct: 313 VLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESK 372

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G + D      +I  Y K   + +A  L  E+      P   TY  L+  L R   + +A
Sbjct: 373 GIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDA 432

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
             L G++      P       L D   +     +A++   +LE    Q     F  +I+G
Sbjct: 433 WNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDG 492

Query: 547 LLAGGFLQDAQRVHGLMEAQGF 568
           L     ++ A+ +   +  +G 
Sbjct: 493 LCKARKIEIARELFNRLSHEGL 514



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/257 (20%), Positives = 115/257 (44%), Gaps = 2/257 (0%)

Query: 245 ELVLSEES--FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMY 302
           +L +S ES   +T+   Y+ LI+ + K   + +A+++ ++M    I+P ++T   L+   
Sbjct: 364 DLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGL 423

Query: 303 SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE 362
            + G +  A   F  ++ H   P+   YN ++            M L   +     + S 
Sbjct: 424 FREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSI 483

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
           +I+  L+    +   +  A ++ N +  E  +P + + T+++    ++G  + A+  F  
Sbjct: 484 QIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLG 543

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
           M   G  P+     +++  + + + + K + LL E+ +  F P  +T +++VD L + + 
Sbjct: 544 MEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPDASTISIVVDLLSKDEK 603

Query: 483 INEAEQLLGKISELGEA 499
             E   LL      G+ 
Sbjct: 604 YREYLHLLPTFPAQGQT 620


>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial; Flags: Precursor
          Length = 602

 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/344 (22%), Positives = 144/344 (41%), Gaps = 5/344 (1%)

Query: 242 KVAELV-----LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTST 296
           KV+E V     + E   Q +V  Y+ +++   +      A  +L+KM E  +  D+ T +
Sbjct: 173 KVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYS 232

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
            ++    + G +D A   F+ + + G +     YNS++     AG+   G  L+  M++ 
Sbjct: 233 TIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSR 292

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
            I  +   +  LL  F + G ++ A ++   M      P + +   L++ Y       +A
Sbjct: 293 EIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEA 352

Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476
            +  D M+R    PD     S+I  Y     +D  + +   + K G      TY++LV  
Sbjct: 353 NNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQG 412

Query: 477 LGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG 536
             +   I  AE+L  ++   G  P       L D     G  +KAL+    L+  K  +G
Sbjct: 413 FCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLG 472

Query: 537 PDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
              +  II G+  GG ++DA  +   +  +G   +      +IS
Sbjct: 473 IVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMIS 516



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 117/263 (44%), Gaps = 12/263 (4%)

Query: 218 LQPSRIDWINLLD------RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKEN 271
           + P+ I +  LLD      +L+E N +LY    E++        N+  Y+ L+D +  +N
Sbjct: 294 IVPNVITFNVLLDVFVKEGKLQEAN-ELY---KEMI--TRGISPNIITYNTLMDGYCMQN 347

Query: 272 CLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYN 331
            L +A  +L  M  N   PDIVT T L+  Y     +D   + F ++   G   +   Y+
Sbjct: 348 RLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYS 407

Query: 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391
            ++  +  +G+ KL   L   M++ G+      Y  LL      G +  A +I   ++  
Sbjct: 408 ILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKS 467

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
           +    +   T ++E   + G  + A + F  +   G KP+      MI+   KK  L +A
Sbjct: 468 KMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEA 527

Query: 452 LNLLLELEKDGFEPGPATYTVLV 474
             LL ++E+DG  P   TY  L+
Sbjct: 528 NILLRKMEEDGNAPNDCTYNTLI 550



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 72/338 (21%), Positives = 133/338 (39%), Gaps = 24/338 (7%)

Query: 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318
           D+S+   A A+           K++  NGI  +I T  ++++ + +      A      +
Sbjct: 90  DFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKV 149

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
              G++PD   +N++I      G+    + LVD M+ +G +     Y +++    + GD 
Sbjct: 150 MKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDT 209

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             A  +   M     +  + + + ++++  + G  D A S F  M   G K       S+
Sbjct: 210 SLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSL 269

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL---GRLQLINEAEQLLGKISE 495
           +    K    +    LL ++      P   T+ VL+D     G+LQ   EA +L  ++  
Sbjct: 270 VRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQ---EANELYKEMIT 326

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFL 553
            G +P      +L D Y       +A   L  +   + +  PD   F  +I G      +
Sbjct: 327 RGISPNIITYNTLMDGYCMQNRLSEANNMLDLMV--RNKCSPDIVTFTSLIKGYCMVKRV 384

Query: 554 QDAQRV------HGLME--------AQGFAASERLKVA 577
            D  +V       GL+          QGF  S ++K+A
Sbjct: 385 DDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLA 422



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 43/230 (18%), Positives = 96/230 (41%), Gaps = 35/230 (15%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +S+     N   YS L+    +   ++ AE + ++M  +G++PD++T  +L+      G 
Sbjct: 394 ISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGK 453

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L++A E FE L+                      + K+ + +V             +Y  
Sbjct: 454 LEKALEIFEDLQ----------------------KSKMDLGIV-------------MYTT 478

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++    + G V  A  +   +  +  +P + + T+++    + G   +A      M   G
Sbjct: 479 IIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDG 538

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
           + P+D    ++I A+ +   L  +  L+ E++  GF    ++  +++D L
Sbjct: 539 NAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDML 588


>gi|8778269|gb|AAF79278.1|AC068602_1 F14D16.2 [Arabidopsis thaliana]
          Length = 977

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 119/259 (45%), Gaps = 3/259 (1%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           Q N   Y++LI ++ + N L +A  +  +M E G  PD VT   L+ +++KAG LD A +
Sbjct: 513 QPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMD 572

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            ++ +++ G  PD   Y+ +I     AG       L   M+  G   +   Y  ++   A
Sbjct: 573 MYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHA 632

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           +  + + A ++   M+   F+P   + ++++E  G  G  ++A + F  M +    PD+ 
Sbjct: 633 KARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEP 692

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
               ++  +GK   ++KA      +   G  P   T   L+    R+  I EA +LL  +
Sbjct: 693 VYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNM 752

Query: 494 SELGEAPP---FKIQVSLC 509
             LG  P    + + +S C
Sbjct: 753 LALGLRPSLQTYTLLLSCC 771



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/274 (21%), Positives = 111/274 (40%), Gaps = 35/274 (12%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           +  F+ +   Y+ ++    +        ++L +M  +G  P+ VT   L+H Y +A  L+
Sbjct: 474 QPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLN 533

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A   F  ++  G +PD+  Y ++I  +  AG   + M +   M   G+           
Sbjct: 534 EAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLS---------- 583

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
                                    P   + ++++   G+AG    A   F  M+  G  
Sbjct: 584 -------------------------PDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCT 618

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           P+      M+  + K      AL L  +++  GFEP   TY+++++ LG    + EAE +
Sbjct: 619 PNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAV 678

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
             ++ +    P   +   L D++ +AG  +KA Q
Sbjct: 679 FTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQ 712



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 89/212 (41%), Gaps = 15/212 (7%)

Query: 369 LRSFAQCGDVRGAGQITNIMRIEEFQPT----LESCTLLVEAY------GQAGDPDQARS 418
           L S   C        +++++R   + P     L++  L ++AY       Q  D   A  
Sbjct: 407 LTSRQYCNSGHIVENVSSVLRRFRWGPAAEEALQNLGLRIDAYQANQVLKQMNDYGNALG 466

Query: 419 NFDYMIRL-GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
            F ++ R  G K D     +M+   G+         LL E+ +DG +P   TY  L+   
Sbjct: 467 FFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSY 526

Query: 478 GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP 537
           GR   +NEA  +  ++ E G  P      +L D++A+AG    A+     ++A    + P
Sbjct: 527 GRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGG--LSP 584

Query: 538 DDFER--IINGLLAGGFLQDAQRVHGLMEAQG 567
           D F    IIN L   G L  A ++   M  QG
Sbjct: 585 DTFTYSVIINCLGKAGHLPAAHKLFCEMVDQG 616



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 74/182 (40%)

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
           R  GF+ D   Y +M+     A Q      L+D M+  G + +   Y  L+ S+ +   +
Sbjct: 473 RQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYL 532

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             A  + N M+    +P   +   L++ + +AG  D A   +  M   G  PD    + +
Sbjct: 533 NEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVI 592

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           I   GK   L  A  L  E+   G  P   TY +++D   + +    A +L   +   G 
Sbjct: 593 INCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGF 652

Query: 499 AP 500
            P
Sbjct: 653 EP 654



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 65/132 (49%), Gaps = 3/132 (2%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +    F+ +   YS +++       LE+AE +  +M +   +PD     +LV ++ KAGN
Sbjct: 647 MQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGN 706

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +++A + ++++   G +P+    NS++  ++   +      L+  M+  G+  S + Y  
Sbjct: 707 VEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTL 766

Query: 368 LLRSFAQCGDVR 379
           LL   + C D R
Sbjct: 767 LL---SCCTDGR 775


>gi|414591138|tpg|DAA41709.1| TPA: hypothetical protein ZEAMMB73_028111 [Zea mays]
          Length = 583

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/344 (22%), Positives = 154/344 (44%), Gaps = 5/344 (1%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++  E  +  V  Y+ L+D+ +    +   E +  +M  N +V D+   T +++ Y +AG
Sbjct: 237 IMENEGIEATVGTYTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVINAYCRAG 296

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           N+ RA +  +    +G +P+++ Y  +I  +   GQ +    L+  M   G+  ++ I+ 
Sbjct: 297 NMRRAAKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFN 356

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            ++  + + G V  A +I   M     +  + +   L     +    D+A++    MI +
Sbjct: 357 TMIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEM 416

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G  P+     ++I+ + K   + +A  L  E+ + G  P   TY V++D   +   I EA
Sbjct: 417 GVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIDGYTKKGSIREA 476

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERII 544
           E+   ++ + G  P      SL   +   G    AL+   F E K+    P+   +  +I
Sbjct: 477 ERFRKEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKL--FEEMKQRGTEPNVVAYTALI 534

Query: 545 NGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS-QTFNRQ 587
           +GL   G  + A +++  M   G    + L  AL+ S  T NR+
Sbjct: 535 SGLAKEGRSEAAFQLYDDMLKAGLIPDDSLYSALVGSLHTDNRK 578



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 142/334 (42%), Gaps = 43/334 (12%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N   Y+ L+D + ++      + IL+ M   GI   + T T+LV   S A ++ + +  F
Sbjct: 211 NALCYNSLLDCYVRQKDDGRVQEILEIMENEGIEATVGTYTILVDSLSTARDISKVEALF 270

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             ++++    D  +Y ++I AY  AG  +    ++D  + +G+E +E  Y  L+  F + 
Sbjct: 271 NEMKANNVVGDVYLYTAVINAYCRAGNMRRAAKVLDECVGNGVEPNERTYGVLINGFCKI 330

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A                    LL +  GQ    +Q   N                
Sbjct: 331 GQMEAAEM------------------LLADMQGQGVGLNQIIFN---------------- 356

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            +MI  Y +K ++D AL +   +EK G E    TY  L   L R+  ++EA+ LL  + E
Sbjct: 357 -TMIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIE 415

Query: 496 LGEAPPFKIQVSLCDMYARAG--IEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGG 551
           +G  P +    +L  ++ + G  +E + L    F E  ++   P    +  +I+G    G
Sbjct: 416 MGVVPNYVTYTTLISIHCKDGDMVEARRL----FREMAEKGATPSVVTYNVMIDGYTKKG 471

Query: 552 FLQDAQRVHGLMEAQGFAASERLKVALISSQTFN 585
            +++A+R    ME +GF        +L+     N
Sbjct: 472 SIREAERFRKEMEKKGFVPDVYTYASLVHGHCVN 505



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 77/160 (48%), Gaps = 6/160 (3%)

Query: 229 LDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGI 288
           ++RL E  T L+      ++ E     N   Y+ LI  H K+  + +A R+ ++M E G 
Sbjct: 400 VNRLDEAKTLLH------IMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGA 453

Query: 289 VPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMS 348
            P +VT  V++  Y+K G++  A+   + +   GF PD   Y S++  +   G+  + + 
Sbjct: 454 TPSVVTYNVMIDGYTKKGSIREAERFRKEMEKKGFVPDVYTYASLVHGHCVNGKVDVALK 513

Query: 349 LVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIM 388
           L + M   G E +   Y AL+   A+ G    A Q+ + M
Sbjct: 514 LFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQLYDDM 553



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 79/174 (45%)

Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
           + +++V+   ++G  D AR   D M R G   +  C  S++  Y ++    +   +L  +
Sbjct: 179 AASVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQEILEIM 238

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
           E +G E    TYT+LVD L   + I++ E L  ++          +  ++ + Y RAG  
Sbjct: 239 ENEGIEATVGTYTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVINAYCRAGNM 298

Query: 519 KKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572
           ++A + L        +     +  +ING    G ++ A+ +   M+ QG   ++
Sbjct: 299 RRAAKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQ 352


>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
 gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 134/320 (41%), Gaps = 5/320 (1%)

Query: 242 KVAELVL-----SEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTST 296
           KV++ VL      E  FQ N   Y  ++    K      A  +L+KM E  I  D V  +
Sbjct: 192 KVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYS 251

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           +++    K G+LD A   F  +   GF+ D  +Y ++I  +  AG+   G  L+  MI  
Sbjct: 252 IIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKR 311

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
            I      + AL+  F + G +R A ++   M      P   + T L++ + +    D+A
Sbjct: 312 KITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKA 371

Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476
               D M+  G  P+ R    +I  Y K NL+D  L L  ++   G      TY  L+  
Sbjct: 372 NHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQG 431

Query: 477 LGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG 536
              L  +  A++L  ++      P       L D     G  +KAL+    +E  K ++ 
Sbjct: 432 FCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELD 491

Query: 537 PDDFERIINGLLAGGFLQDA 556
              +  II+G+     + DA
Sbjct: 492 IGIYNIIIHGMCNASKVDDA 511



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 135/275 (49%), Gaps = 10/275 (3%)

Query: 215 KELLQ----PSRIDWINLLDRLREQNTQL--YFKVAELVLSEESFQTNVRDYSKLIDAHA 268
           KE++Q    P  + + +L+D   ++N QL     + +L++S+     N+R ++ LI+ + 
Sbjct: 341 KEMIQRGISPDTVTYTSLIDGFCKEN-QLDKANHMLDLMVSK-GCGPNIRTFNILINGYC 398

Query: 269 KENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKK 328
           K N ++D   + +KM+  G+V D VT   L+  + + G L+ AKE F+ + S   +PD  
Sbjct: 399 KANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIV 458

Query: 329 VYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIM 388
            Y  ++    + G+P+  + + + +  S +E    IY  ++        V  A  +   +
Sbjct: 459 SYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSL 518

Query: 389 RIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLL 448
            ++  +P +++  +++    + G   +A   F  M   GH P+      +I A+  +   
Sbjct: 519 PLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDA 578

Query: 449 DKALNLLLELEKDGFEPGPATYTVLVDWL--GRLQ 481
            K+  L+ E+++ GF    +T  ++VD L  GRL+
Sbjct: 579 TKSAKLIEEIKRCGFSVDASTVKMVVDMLSDGRLK 613



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 68/305 (22%), Positives = 128/305 (41%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           ++ +   +S LI+    E  + +A  ++ +M E G  P ++T   LV+     G +  A 
Sbjct: 138 YEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAV 197

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
              + +   GFQP++  Y  ++     +GQ  L M L+  M    I+     Y  ++   
Sbjct: 198 LLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGL 257

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + G +  A  + N M I+ F+  +   T L+  +  AG  D        MI+    PD 
Sbjct: 258 CKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDV 317

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
              +++I  + K+  L +A  L  E+ + G  P   TYT L+D   +   +++A  +L  
Sbjct: 318 VAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDL 377

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
           +   G  P  +    L + Y +A +    L+    +  +        +  +I G    G 
Sbjct: 378 MVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGK 437

Query: 553 LQDAQ 557
           L+ A+
Sbjct: 438 LEVAK 442



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 83/375 (22%), Positives = 159/375 (42%), Gaps = 13/375 (3%)

Query: 203 KEEDPSPLLAEW-KELLQPSRIDWINLLDRLREQNTQLYFKVAELV--LSEESFQTNVRD 259
           KE+D   L  E  +   +P  ID+  L   +    T+ Y  V +L   +  +    N+  
Sbjct: 52  KEDDAVDLFQEMTRSRPRPRLIDFSRLFSVV--ARTKQYDLVLDLCKQMELKGIAHNLYT 109

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
            S +I+   +   L  A   + K+ + G  PD VT + L++     G +  A E  + + 
Sbjct: 110 LSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMV 169

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +P     N+++      G+    + L+D M+ +G + +E  Y  +L+   + G   
Sbjct: 170 EMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTA 229

Query: 380 GAGQITNIMRIEEFQPTLESC--TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
            A ++  + ++EE +  L++   +++++   + G  D A + F+ M   G K D     +
Sbjct: 230 LAMEL--LRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTT 287

Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           +I  +      D    LL ++ K    P    ++ L+D   +   + EAE+L  ++ + G
Sbjct: 288 LIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRG 347

Query: 498 EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQD 555
            +P      SL D + +     KA   L  + +K    GP+   F  +ING      + D
Sbjct: 348 ISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSK--GCGPNIRTFNILINGYCKANLIDD 405

Query: 556 AQRVHGLMEAQGFAA 570
              +   M  +G  A
Sbjct: 406 GLELFRKMSLRGVVA 420



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 88/192 (45%)

Query: 388 MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447
           M ++     L + ++++    +      A S    +I+LG++PD    +++I     +  
Sbjct: 98  MELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGR 157

Query: 448 LDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVS 507
           + +AL L+  + + G +P   T   LV+ L     +++A  L+ ++ E G  P       
Sbjct: 158 VSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGP 217

Query: 508 LCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
           +  +  ++G    A++ L  +E +K ++    +  II+GL   G L +A  +   ME +G
Sbjct: 218 VLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKG 277

Query: 568 FAASERLKVALI 579
           F A   +   LI
Sbjct: 278 FKADIIIYTTLI 289


>gi|356564530|ref|XP_003550506.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g11690-like [Glycine max]
          Length = 556

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 122/265 (46%), Gaps = 3/265 (1%)

Query: 241 FKV-AELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLV 299
           FKV AE+   E+     V  Y+ LI    +     +A +++ K+N+ G+ P+IVT  +L+
Sbjct: 283 FKVFAEM--REKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILI 340

Query: 300 HMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
           + +   G +D A   F  L+S G  P    YN++I  Y         + LV  M    I 
Sbjct: 341 NGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIA 400

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
           RS+  Y  L+ +FA+      A ++ ++M      P + + ++L+      G+  +A   
Sbjct: 401 RSKVTYTILIDAFARLNYTDKACEMHSLMEKSGLVPDVYTYSVLIHGXCVNGNMKEASKP 460

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
           F  +  +  +P+     +MI  Y K+    +AL LL E+   G  P  A++   +  L R
Sbjct: 461 FKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHSGMVPNVASFCSTMGLLCR 520

Query: 480 LQLINEAEQLLGKISELGEAPPFKI 504
            +   EAE LLG++   G  P   +
Sbjct: 521 DEKWKEAELLLGQMINSGLKPSVSL 545



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 136/337 (40%), Gaps = 17/337 (5%)

Query: 210 LLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHA 268
           LLA  +E  L P+ + +  L+D   +    +  K     +       N   YS L++   
Sbjct: 180 LLAVLEEFGLSPNVVIYTTLIDGCCKNGDVMLAKNLFCKMDRLGLVPNQHTYSVLMNGFF 239

Query: 269 KENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKK 328
           K+    +  ++ + MN +GIVP+      L+  Y   G +D+A + F  +R  G      
Sbjct: 240 KQGLQREGFQMYENMNRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVM 299

Query: 329 VYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIM 388
            YN +I       +    + LV  +   G+  +   Y  L+  F   G +  A ++ N +
Sbjct: 300 TYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQL 359

Query: 389 RIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS-------MIAA 441
           +     PTL +   L+  Y +  +   A       + L  + ++RC A        +I A
Sbjct: 360 KSSGLSPTLVTYNTLIAGYSKVENLAGA-------LDLVKEMEERCIARSKVTYTILIDA 412

Query: 442 YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
           + + N  DKA  +   +EK G  P   TY+VL+        + EA +    + E+   P 
Sbjct: 413 FARLNYTDKACEMHSLMEKSGLVPDVYTYSVLIHGXCVNGNMKEASKPFKSLGEMHLQPN 472

Query: 502 FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
             I  ++   Y + G   +AL+ L   E     M P+
Sbjct: 473 SVIYNTMIHGYCKEGSSYRALRLLN--EMVHSGMVPN 507



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/280 (21%), Positives = 108/280 (38%), Gaps = 35/280 (12%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N   +  +I    +        R+L  + E G+ P++V  T L+    K G++  AK  F
Sbjct: 157 NAYSFGIMITGCCEAGYFVRVFRLLAVLEEFGLSPNVVIYTTLIDGCCKNGDVMLAKNLF 216

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ- 374
             +   G  P++  Y+ ++  +   G  + G  + + M  SGI  +   Y  L+  +   
Sbjct: 217 CKMDRLGLVPNQHTYSVLMNGFFKQGLQREGFQMYENMNRSGIVPNAYAYNCLISEYCND 276

Query: 375 -------------------CGDVRGAGQITNIMRIEEF---------------QPTLESC 400
                              CG +     I  + R ++F                P + + 
Sbjct: 277 GMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTY 336

Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
            +L+  +   G  D A   F+ +   G  P      ++IA Y K   L  AL+L+ E+E+
Sbjct: 337 NILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEE 396

Query: 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
                   TYT+L+D   RL   ++A ++   + + G  P
Sbjct: 397 RCIARSKVTYTILIDAFARLNYTDKACEMHSLMEKSGLVP 436


>gi|255660800|gb|ACU25569.1| pentatricopeptide repeat-containing protein [Verbena rigida]
          Length = 418

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 121/262 (46%), Gaps = 8/262 (3%)

Query: 211 LAEWKELLQPSRIDWINLLD---RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAH 267
           + +W   L+PS + +  L++   +L + N     K A   +     Q +V  YS LI+  
Sbjct: 162 ITKWG--LRPSVVSFNTLMNGYIKLGDLNEGFRLKNA---MQASGVQPDVYTYSVLINGL 216

Query: 268 AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK 327
            KE+ ++DA  +  +M + G+VP+ VT T L+  + K G +D A E ++ + S    PD 
Sbjct: 217 CKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDL 276

Query: 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNI 387
             YN++I      G  K    L+D MI  G++  +  Y  L+    + GD+  A +    
Sbjct: 277 ITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKFTYTTLIDGNCKEGDLETAFEYRKR 336

Query: 388 MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447
           M  E  +    + T L+    Q G    A      M+ +G KP+      +I  + KK  
Sbjct: 337 MIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGD 396

Query: 448 LDKALNLLLELEKDGFEPGPAT 469
           +     LL E+++DG++P   T
Sbjct: 397 VWXGSKLLKEMQRDGYKPSVVT 418



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/283 (20%), Positives = 130/283 (45%), Gaps = 3/283 (1%)

Query: 220 PSRIDWINLL--DRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           P+ + + N+L    ++E   +L   V +  +++   + +V  ++ L++ + K   L +  
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFD-AITKWGLRPSVVSFNTLMNGYIKLGDLNEGF 191

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
           R+   M  +G+ PD+ T +VL++   K   +D A   F+ +   G  P+   + ++I  +
Sbjct: 192 RLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGH 251

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
              G+  L M +   M++  +      Y  L+    + GD++ A  + + M ++  +P  
Sbjct: 252 CKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDK 311

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
            + T L++   + GD + A      MI+   + DD    ++I+   ++     A  +L E
Sbjct: 312 FTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLRE 371

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
           +   G +P   TYT++++   +   +    +LL ++   G  P
Sbjct: 372 MLSVGLKPEIGTYTMIINEFCKKGDVWXGSKLLKEMQRDGYKP 414



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/267 (21%), Positives = 114/267 (42%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E  +  ++  ++ L+ +  KE  +  A+ +   + + G+ P +V+   L++ Y K G+L+
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLN 188

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
                  ++++ G QPD   Y+ +I       +      L D M+  G+  +   +  L+
Sbjct: 189 EGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLI 248

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               + G V  A +I   M  +   P L +   L+    + GD  QA+   D MI  G K
Sbjct: 249 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLK 308

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     ++I    K+  L+ A      + K+        YT L+  L +     +AE++
Sbjct: 309 PDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAG 516
           L ++  +G  P       + + + + G
Sbjct: 369 LREMLSVGLKPEIGTYTMIINEFCKKG 395



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/309 (21%), Positives = 131/309 (42%), Gaps = 6/309 (1%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGI-VPDIVTSTVLVHMYSKAGNLDRAK 312
           ++++  +S LI A+ +   L DA    +   E+   VP      VL H+  K        
Sbjct: 63  RSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHL-MKLKYFKLVW 121

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
             +E     G+      +N ++ ++V  G+ +L  S+ D +   G+  S   +  L+  +
Sbjct: 122 GFYEENLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGY 181

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + GD+    ++ N M+    QP + + ++L+    +    D A   FD M+  G  P+ 
Sbjct: 182 IKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNG 241

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               ++I  + K   +D A+ +  ++      P   TY  L+  L +   + +A+ L+ +
Sbjct: 242 VTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDE 301

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAG 550
           +   G  P      +L D   + G  + A +        KE +  DD  +  +I+GL   
Sbjct: 302 MIMKGLKPDKFTYTTLIDGNCKEGDLETAFEYRK--RMIKENIRLDDVAYTALISGLCQE 359

Query: 551 GFLQDAQRV 559
           G   DA+++
Sbjct: 360 GRSVDAEKM 368


>gi|255660790|gb|ACU25564.1| pentatricopeptide repeat-containing protein [Verbena hispida]
          Length = 418

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 121/262 (46%), Gaps = 8/262 (3%)

Query: 211 LAEWKELLQPSRIDWINLLD---RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAH 267
           + +W   L+PS + +  L++   +L + N     K A   +     Q +V  YS LI+  
Sbjct: 162 ITKWG--LRPSVVSFNTLMNGYIKLGDLNEGFRLKNA---MQASGVQPDVYTYSVLINGL 216

Query: 268 AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK 327
            KE+ ++DA  +  +M + G+VP+ VT T L+  + K G +D A E ++ + S    PD 
Sbjct: 217 CKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDL 276

Query: 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNI 387
             YN++I      G  K    L+D MI  G++  +  Y  L+    + GD+  A +    
Sbjct: 277 ITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKR 336

Query: 388 MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447
           M  E  +    + T L+    Q G    A      M+ +G KP+      +I  + KK  
Sbjct: 337 MIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGD 396

Query: 448 LDKALNLLLELEKDGFEPGPAT 469
           +     LL E+++DG++P   T
Sbjct: 397 VWTGSKLLKEMQRDGYKPSVVT 418



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/283 (20%), Positives = 130/283 (45%), Gaps = 3/283 (1%)

Query: 220 PSRIDWINLLDR--LREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           P+ + + N+L    ++E   +L   V +  +++   + +V  ++ L++ + K   L +  
Sbjct: 133 PASLYFFNILMHGFVKEGEIRLAQSVFD-AITKWGLRPSVVSFNTLMNGYIKLGDLNEGF 191

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
           R+   M  +G+ PD+ T +VL++   K   +D A   F+ +   G  P+   + ++I  +
Sbjct: 192 RLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGH 251

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
              G+  L M +   M++  +      Y  L+    + GD++ A  + + M ++  +P  
Sbjct: 252 CKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDK 311

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
            + T L++   + GD + A      MI+   + DD    ++I+   ++     A  +L E
Sbjct: 312 ITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLRE 371

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
           +   G +P   TYT++++   +   +    +LL ++   G  P
Sbjct: 372 MLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYKP 414



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/267 (21%), Positives = 113/267 (42%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E  +  ++  ++ L+    KE  +  A+ +   + + G+ P +V+   L++ Y K G+L+
Sbjct: 129 ECGYPASLYFFNILMHGFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLN 188

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
                  ++++ G QPD   Y+ +I       +      L D M+  G+  +   +  L+
Sbjct: 189 EGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLI 248

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               + G V  A +I   M  +   P L +   L+    + GD  QA+   D MI  G K
Sbjct: 249 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLK 308

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     ++I    K+  L+ A      + K+        YT L+  L +     +AE++
Sbjct: 309 PDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAG 516
           L ++  +G  P       + + + + G
Sbjct: 369 LREMLSVGLKPEIGTYTMIINEFCKKG 395



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/309 (21%), Positives = 130/309 (42%), Gaps = 6/309 (1%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGI-VPDIVTSTVLVHMYSKAGNLDRAK 312
           ++++  +S LI A+ +   L DA    +   E+   VP      VL H+  K        
Sbjct: 63  RSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHL-MKLKYFKLVW 121

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
             +E     G+      +N ++  +V  G+ +L  S+ D +   G+  S   +  L+  +
Sbjct: 122 GFYEENLECGYPASLYFFNILMHGFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGY 181

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + GD+    ++ N M+    QP + + ++L+    +    D A   FD M+  G  P+ 
Sbjct: 182 IKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNG 241

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               ++I  + K   +D A+ +  ++      P   TY  L+  L +   + +A+ L+ +
Sbjct: 242 VTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDE 301

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAG 550
           +   G  P      +L D   + G  + A +        KE +  DD  +  +I+GL   
Sbjct: 302 MIMKGLKPDKITYTTLIDGNCKEGDLETAFEYRK--RMIKENIRLDDVAYTALISGLCQE 359

Query: 551 GFLQDAQRV 559
           G   DA+++
Sbjct: 360 GRSVDAEKM 368


>gi|334182677|ref|NP_001185030.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332191659|gb|AEE29780.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 886

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 119/259 (45%), Gaps = 3/259 (1%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           Q N   Y++LI ++ + N L +A  +  +M E G  PD VT   L+ +++KAG LD A +
Sbjct: 396 QPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMD 455

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            ++ +++ G  PD   Y+ +I     AG       L   M+  G   +   Y  ++   A
Sbjct: 456 MYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHA 515

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           +  + + A ++   M+   F+P   + ++++E  G  G  ++A + F  M +    PD+ 
Sbjct: 516 KARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEP 575

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
               ++  +GK   ++KA      +   G  P   T   L+    R+  I EA +LL  +
Sbjct: 576 VYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNM 635

Query: 494 SELGEAPP---FKIQVSLC 509
             LG  P    + + +S C
Sbjct: 636 LALGLRPSLQTYTLLLSCC 654



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/274 (21%), Positives = 111/274 (40%), Gaps = 35/274 (12%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           +  F+ +   Y+ ++    +        ++L +M  +G  P+ VT   L+H Y +A  L+
Sbjct: 357 QPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLN 416

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A   F  ++  G +PD+  Y ++I  +  AG   + M +   M   G+           
Sbjct: 417 EAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLS---------- 466

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
                                    P   + ++++   G+AG    A   F  M+  G  
Sbjct: 467 -------------------------PDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCT 501

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           P+      M+  + K      AL L  +++  GFEP   TY+++++ LG    + EAE +
Sbjct: 502 PNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAV 561

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
             ++ +    P   +   L D++ +AG  +KA Q
Sbjct: 562 FTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQ 595



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 89/212 (41%), Gaps = 15/212 (7%)

Query: 369 LRSFAQCGDVRGAGQITNIMRIEEFQPT----LESCTLLVEAY------GQAGDPDQARS 418
           L S   C        +++++R   + P     L++  L ++AY       Q  D   A  
Sbjct: 290 LTSRQYCNSGHIVENVSSVLRRFRWGPAAEEALQNLGLRIDAYQANQVLKQMNDYGNALG 349

Query: 419 NFDYMIRL-GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
            F ++ R  G K D     +M+   G+         LL E+ +DG +P   TY  L+   
Sbjct: 350 FFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSY 409

Query: 478 GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP 537
           GR   +NEA  +  ++ E G  P      +L D++A+AG    A+     ++A    + P
Sbjct: 410 GRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGG--LSP 467

Query: 538 DDFER--IINGLLAGGFLQDAQRVHGLMEAQG 567
           D F    IIN L   G L  A ++   M  QG
Sbjct: 468 DTFTYSVIINCLGKAGHLPAAHKLFCEMVDQG 499



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 74/182 (40%)

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
           R  GF+ D   Y +M+     A Q      L+D M+  G + +   Y  L+ S+ +   +
Sbjct: 356 RQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYL 415

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             A  + N M+    +P   +   L++ + +AG  D A   +  M   G  PD    + +
Sbjct: 416 NEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVI 475

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           I   GK   L  A  L  E+   G  P   TY +++D   + +    A +L   +   G 
Sbjct: 476 INCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGF 535

Query: 499 AP 500
            P
Sbjct: 536 EP 537



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 65/132 (49%), Gaps = 3/132 (2%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +    F+ +   YS +++       LE+AE +  +M +   +PD     +LV ++ KAGN
Sbjct: 530 MQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGN 589

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +++A + ++++   G +P+    NS++  ++   +      L+  M+  G+  S + Y  
Sbjct: 590 VEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTL 649

Query: 368 LLRSFAQCGDVR 379
           LL   + C D R
Sbjct: 650 LL---SCCTDGR 658


>gi|242046162|ref|XP_002460952.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
 gi|241924329|gb|EER97473.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
          Length = 796

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/343 (21%), Positives = 150/343 (43%), Gaps = 40/343 (11%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG------------- 306
           Y+ L+   ++     DA  + ++M + G+ P +VT  V++H+YSK               
Sbjct: 188 YTALVSEFSRAGRFRDAVAVFRRMVDGGVQPALVTYNVVLHVYSKMSVPWKEVVVLVDSM 247

Query: 307 -----NLDR------------------AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343
                 LDR                  A + F+ +++ GF+PDK  +NS++  Y  A + 
Sbjct: 248 KEDGIELDRYTYNTLISCCRRRGLYREAAQMFDEMKAAGFEPDKVTFNSLLDVYGKARRH 307

Query: 344 KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403
           +  + ++  M  +G   S   Y +L+ ++ + G +  A ++   M     +P + + T L
Sbjct: 308 EEAIGVLKKMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTL 367

Query: 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGF 463
           +    + G  D A + +  M+R G  P+     ++I  +G +    + + +  +L   G+
Sbjct: 368 ISGLDRIGKIDAALATYSEMVRNGCSPNLCTYNALIKMHGVRGKFTEMMIVFDDLRSAGY 427

Query: 464 EPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
            P   T+  L+   G+  L +E   +  ++ + G  P     VSL   Y+R G+  +A++
Sbjct: 428 VPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAME 487

Query: 524 ALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLME 564
              +    +  + PD   +  +++ L  GG    A+++   ME
Sbjct: 488 I--YKRMIEAGIYPDISTYNAVLSALARGGRWVQAEKLFAEME 528



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 126/299 (42%), Gaps = 9/299 (3%)

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP-KLGMS 348
           PD    T LV  +S+AG    A   F  +   G QP    YN ++  Y     P K  + 
Sbjct: 183 PDASAYTALVSEFSRAGRFRDAVAVFRRMVDGGVQPALVTYNVVLHVYSKMSVPWKEVVV 242

Query: 349 LVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYG 408
           LVD M   GIE     Y  L+    + G  R A Q+ + M+   F+P   +   L++ YG
Sbjct: 243 LVDSMKEDGIELDRYTYNTLISCCRRRGLYREAAQMFDEMKAAGFEPDKVTFNSLLDVYG 302

Query: 409 QAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPA 468
           +A   ++A      M   G  P      S+I+AY K  LL++AL L  E+E  G +P   
Sbjct: 303 KARRHEEAIGVLKKMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVV 362

Query: 469 TYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFL 528
           TYT L+  L R+  I+ A     ++   G +P      +L  M+   G  K     + F 
Sbjct: 363 TYTTLISGLDRIGKIDAALATYSEMVRNGCSPNLCTYNALIKMHGVRG--KFTEMMIVFD 420

Query: 529 EAKKEQMGPDDFERIINGLLA----GGFLQDAQRVHGLMEAQGFAASERLKVALISSQT 583
           + +     PD      N LLA     G   +   V   M+  G+       V+LISS +
Sbjct: 421 DLRSAGYVPDVV--TWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYS 477



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 138/321 (42%), Gaps = 15/321 (4%)

Query: 208 SPLLAEWKEL-----------LQPSRIDWINLLDRLREQNTQLYFKVAELV--LSEESFQ 254
           S +   WKE+           ++  R  +  L+   R +   LY + A++   +    F+
Sbjct: 231 SKMSVPWKEVVVLVDSMKEDGIELDRYTYNTLISCCRRRG--LYREAAQMFDEMKAAGFE 288

Query: 255 TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA 314
            +   ++ L+D + K    E+A  +LKKM   G  P +VT   L+  Y K G L+ A E 
Sbjct: 289 PDKVTFNSLLDVYGKARRHEEAIGVLKKMENAGCTPSVVTYNSLISAYVKDGLLEEALEL 348

Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
            + +   G +PD   Y ++I      G+    ++    M+ +G   +   Y AL++    
Sbjct: 349 KQEMEFRGMKPDVVTYTTLISGLDRIGKIDAALATYSEMVRNGCSPNLCTYNALIKMHGV 408

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
            G       + + +R   + P + +   L+  +GQ G   +    F  M + G+ P+   
Sbjct: 409 RGKFTEMMIVFDDLRSAGYVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDT 468

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
             S+I++Y +  L D+A+ +   + + G  P  +TY  ++  L R     +AE+L  ++ 
Sbjct: 469 YVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWVQAEKLFAEME 528

Query: 495 ELGEAPPFKIQVSLCDMYARA 515
           +    P      SL   YA A
Sbjct: 529 DRDCKPDELSYSSLLHAYANA 549



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/301 (22%), Positives = 131/301 (43%), Gaps = 3/301 (0%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELV--LSEESFQTNVRDYSKLIDAHAKENCLED 275
           +QP+ + + N++  +  + +  + +V  LV  + E+  + +   Y+ LI    +     +
Sbjct: 216 VQPALVTY-NVVLHVYSKMSVPWKEVVVLVDSMKEDGIELDRYTYNTLISCCRRRGLYRE 274

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A ++  +M   G  PD VT   L+ +Y KA   + A    + + + G  P    YNS+I 
Sbjct: 275 AAQMFDEMKAAGFEPDKVTFNSLLDVYGKARRHEEAIGVLKKMENAGCTPSVVTYNSLIS 334

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
           AYV  G  +  + L   M   G++     Y  L+    + G +  A    + M      P
Sbjct: 335 AYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRIGKIDAALATYSEMVRNGCSP 394

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
            L +   L++ +G  G   +    FD +   G+ PD     +++A +G+  L  +   + 
Sbjct: 395 NLCTYNALIKMHGVRGKFTEMMIVFDDLRSAGYVPDVVTWNTLLAVFGQNGLDSEVSGVF 454

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
            E++K G+ P   TY  L+    R  L ++A ++  ++ E G  P      ++    AR 
Sbjct: 455 KEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARG 514

Query: 516 G 516
           G
Sbjct: 515 G 515



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 86/396 (21%), Positives = 162/396 (40%), Gaps = 45/396 (11%)

Query: 218 LQPSRIDWINL---LDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           ++P  + +  L   LDR+ + +  L    +E+V        N+  Y+ LI  H       
Sbjct: 357 MKPDVVTYTTLISGLDRIGKIDAAL-ATYSEMV--RNGCSPNLCTYNALIKMHGVRGKFT 413

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           +   +   +   G VPD+VT   L+ ++ + G        F+ ++  G+ P++  Y S+I
Sbjct: 414 EMMIVFDDLRSAGYVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLI 473

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
            +Y   G     M +   MI +GI      Y A+L + A+ G    A ++   M   + +
Sbjct: 474 SSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWVQAEKLFAEMEDRDCK 533

Query: 395 PTLESCTLLVEAYGQAGDPDQARS-----------NFDYMIR----LGHKPDD------- 432
           P   S + L+ AY  A   D+ ++             +++++    + +K +        
Sbjct: 534 PDELSYSSLLHAYANAKKLDKMKALSEDIYAQRIEPHNWLVKTLVLVNNKVNSLSETEKA 593

Query: 433 -------RCT------ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
                  RC+       +M++ YGK  ++ K   +L  ++++      ATY  L+    R
Sbjct: 594 FQELRRRRCSLDINVLNAMVSIYGKNKMVKKVEEVLTLMKENSINHSAATYNSLMHMYSR 653

Query: 480 LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD- 538
           L    + E +L +I   G  P      ++   Y R G  K+A +   F E K   + PD 
Sbjct: 654 LGDCEKCEAILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRL--FSEMKCSGVKPDI 711

Query: 539 -DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASER 573
             +   I   +A    ++A  +   + AQG   +ER
Sbjct: 712 VTYNIFIKSYVANLMFEEAIDLVRYLVAQGCKPNER 747



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/304 (20%), Positives = 125/304 (41%), Gaps = 38/304 (12%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  LI ++++    + A  I K+M E GI PDI T   ++   ++ G   +A++ F  + 
Sbjct: 469 YVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWVQAEKLFAEME 528

Query: 320 SHGFQPDKKVYNSMIMAYVNAG-----------------QPKLGMSLVDMMITSGIERSE 362
               +PD+  Y+S++ AY NA                  +P   +    +++ + +    
Sbjct: 529 DRDCKPDELSYSSLLHAYANAKKLDKMKALSEDIYAQRIEPHNWLVKTLVLVNNKVNSLS 588

Query: 363 E------------------IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
           E                  +  A++  + +   V+   ++  +M+      +  +   L+
Sbjct: 589 ETEKAFQELRRRRCSLDINVLNAMVSIYGKNKMVKKVEEVLTLMKENSINHSAATYNSLM 648

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
             Y + GD ++  +    +   G +PD     ++I AYG+K  + +A  L  E++  G +
Sbjct: 649 HMYSRLGDCEKCEAILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVK 708

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQA 524
           P   TY + +       +  EA  L+  +   G  P  +   S+ + Y R G   + ++A
Sbjct: 709 PDIVTYNIFIKSYVANLMFEEAIDLVRYLVAQGCKPNERTYNSILEGYCRHG---RMVEA 765

Query: 525 LGFL 528
             FL
Sbjct: 766 KSFL 769



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 103/237 (43%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS L+ A+A    L+  + + + +    I P       LV + +K  +L   ++AF+ LR
Sbjct: 539 YSSLLHAYANAKKLDKMKALSEDIYAQRIEPHNWLVKTLVLVNNKVNSLSETEKAFQELR 598

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
                 D  V N+M+  Y      K    ++ +M  + I  S   Y +L+  +++ GD  
Sbjct: 599 RRRCSLDINVLNAMVSIYGKNKMVKKVEEVLTLMKENSINHSAATYNSLMHMYSRLGDCE 658

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
               I   ++    +P   S   ++ AYG+ G   +A   F  M   G KPD       I
Sbjct: 659 KCEAILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIFI 718

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
            +Y    + ++A++L+  L   G +P   TY  +++   R   + EA+  L  + ++
Sbjct: 719 KSYVANLMFEEAIDLVRYLVAQGCKPNERTYNSILEGYCRHGRMVEAKSFLSNLPKI 775



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 95/201 (47%), Gaps = 7/201 (3%)

Query: 193 LITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELV--LSE 250
           L+ +K+ SL + E     L   +  L    I+ +N +  +  +N ++  KV E++  + E
Sbjct: 579 LVNNKVNSLSETEKAFQELRRRRCSLD---INVLNAMVSIYGKN-KMVKKVEEVLTLMKE 634

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
            S   +   Y+ L+  +++    E  E IL ++  +G+ PD  +   +++ Y + G +  
Sbjct: 635 NSINHSAATYNSLMHMYSRLGDCEKCEAILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKE 694

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A   F  ++  G +PD   YN  I +YV     +  + LV  ++  G + +E  Y ++L 
Sbjct: 695 ASRLFSEMKCSGVKPDIVTYNIFIKSYVANLMFEEAIDLVRYLVAQGCKPNERTYNSILE 754

Query: 371 SFAQCGD-VRGAGQITNIMRI 390
            + + G  V     ++N+ +I
Sbjct: 755 GYCRHGRMVEAKSFLSNLPKI 775


>gi|125569067|gb|EAZ10582.1| hypothetical protein OsJ_00414 [Oryza sativa Japonica Group]
          Length = 1003

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 149/324 (45%), Gaps = 5/324 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           ++E     N   ++ LI+   K+  +++A R+  KM ++ ++P+ VT  V++  Y   GN
Sbjct: 469 MAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGN 528

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAY-VNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           + +A + ++ +   G +PD   Y S+I    + +G  K    + D+  +  +  +  +  
Sbjct: 529 IRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSL-T 587

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           ALL  F + G       + + M +   +  L S T++V A  +  D +++   F  M   
Sbjct: 588 ALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQ 647

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G KPDD     MI A  K+  + +ALN   ++  DG+ P   T+TVL++ L +   +  A
Sbjct: 648 GVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSA 707

Query: 487 EQLLGKISELGEAPPFKIQVS-LCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIIN 545
           E LL K    G   P K   +   D +A  G  +KA + L     +        F  +I 
Sbjct: 708 E-LLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKA-KDLHSAMLQGHLASIVSFNILIK 765

Query: 546 GLLAGGFLQDAQRVHGLMEAQGFA 569
           GL   G +Q+A  +   +   GF+
Sbjct: 766 GLCKAGKIQEAIDLMSKITESGFS 789



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 85/361 (23%), Positives = 146/361 (40%), Gaps = 15/361 (4%)

Query: 186 PITGKCKLITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKVA 244
           P    C  + D++   E  E+   L  +  +L + P+   +  L+D+L +      F  A
Sbjct: 301 PSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNER---FDDA 357

Query: 245 ELVLSE---ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM 301
           + +  E      + N   Y+ LI A  K   +EDA  +  KM + GI   +     L++ 
Sbjct: 358 DRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLING 417

Query: 302 YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS 361
           Y K G+LDRA+     +   G  P    Y+ +I      G     M L   M   GI  +
Sbjct: 418 YCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWN 477

Query: 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421
              + AL+  F +   +  A ++ + M      P   +  +++E Y   G+  +A   +D
Sbjct: 478 NYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYD 537

Query: 422 YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ 481
            M+ +G KPD+    S+I+     + + KA   + +LE         + T L+    R  
Sbjct: 538 QMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREG 597

Query: 482 LINEAEQLLGKISELG---EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
              E   L  +++  G   +   F I V     YA      K    + F E K++ + PD
Sbjct: 598 RFTETYHLWDEMAVRGVKLDLVSFTIIV-----YAALKQHDKEKSCVLFREMKEQGVKPD 652

Query: 539 D 539
           D
Sbjct: 653 D 653



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 130/307 (42%), Gaps = 4/307 (1%)

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A  +  KM ++G+  D    T  +  Y ++ NLD A+     + S G +     YN ++ 
Sbjct: 182 ARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRMESEGVKASAVPYNVLMY 241

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
                 + +  + + ++M+  G+   E  Y  L+  F +  ++  A +IT+ M    F P
Sbjct: 242 GLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVP 301

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
           +  +C+ +++   +    ++A S    +  LG  P+     ++I    K    D A  L 
Sbjct: 302 SEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLF 361

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
            E+   G EP   TY +L+  L +  +I +A  L  K+ + G         SL + Y + 
Sbjct: 362 KEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQ 421

Query: 516 GIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASER 573
           G   +A   L  +   KE + P    +  +I GL   G L     +H  M  +G A +  
Sbjct: 422 GSLDRARGLLSGM--VKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNY 479

Query: 574 LKVALIS 580
              ALI+
Sbjct: 480 TFTALIN 486



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/311 (19%), Positives = 131/311 (42%), Gaps = 9/311 (2%)

Query: 242 KVAELVLSEESFQTNVRDYS--KLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLV 299
           K  E V   E+    + ++S   L+    +E    +   +  +M   G+  D+V+ T++V
Sbjct: 566 KANEFVADLENSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIV 625

Query: 300 HMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
           +   K  + +++   F  ++  G +PD   Y  MI A          ++  D M+  G  
Sbjct: 626 YAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYS 685

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
            +   +  L+ +  + G +  A  +   M      P   +    ++ +   GD ++A+  
Sbjct: 686 PNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDL 745

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
              M++ GH         +I    K   + +A++L+ ++ + GF P   +Y+ ++  L +
Sbjct: 746 HSAMLQ-GHLASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCK 804

Query: 480 LQLINEAEQLLGKISELGEAP---PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG 536
           +  IN+A +L  ++   G  P    + I +  C+++   G   KAL     +     Q  
Sbjct: 805 MGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVH---GESDKALGIYTNMIRSGVQPN 861

Query: 537 PDDFERIINGL 547
            D +  +++G+
Sbjct: 862 WDTYRALLSGI 872



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 102/240 (42%), Gaps = 2/240 (0%)

Query: 193 LITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEE 251
           +I    L    +E    L  E KE  ++P  I +  ++D L ++   +        +  +
Sbjct: 623 IIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVD 682

Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311
            +  N   ++ LI+   K   L  AE + K+M    ++P+  T    +  ++  G++++A
Sbjct: 683 GYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKA 742

Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
           K+   S    G       +N +I     AG+ +  + L+  +  SG       Y  ++  
Sbjct: 743 KD-LHSAMLQGHLASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHE 801

Query: 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
             + GD+  A ++ N M  +  +P + +  + +      G+ D+A   +  MIR G +P+
Sbjct: 802 LCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGVQPN 861


>gi|225435038|ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900 [Vitis vinifera]
          Length = 900

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 138/313 (44%), Gaps = 4/313 (1%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           +LS +  + +V  Y  L+    K    E  E ++ +M E G VP     + LV    K G
Sbjct: 275 LLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKG 334

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           N+  A +    ++  G  P   VYN++I +    G+     SL + M   G+  ++  Y 
Sbjct: 335 NIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYS 394

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+ SF + G +  A      M     + T+   + L+  + + G    A+S FD MI  
Sbjct: 395 ILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIAN 454

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G KP+     S+I+ Y K+  L  A  L  E+   G  P   T+T L+  L     + EA
Sbjct: 455 GLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEA 514

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFER--II 544
            +L G++ E    P       L + + + G   +A + L   E  ++ + PD +    +I
Sbjct: 515 NKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLD--EMVEKGLVPDTYTYRPLI 572

Query: 545 NGLLAGGFLQDAQ 557
           +GL + G + +A+
Sbjct: 573 SGLCSTGRVSEAR 585



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 129/310 (41%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           ++E   +  V  YS LI  H K   L  A+ +  +M  NG+ P++V  T L+  Y K G 
Sbjct: 416 MTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGE 475

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L  A   +  +   G  P+   + ++I    +A +      L   M+   +  +E  Y  
Sbjct: 476 LHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNV 535

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    + G+   A ++ + M  +   P   +   L+      G   +AR   + +    
Sbjct: 536 LIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQ 595

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            K ++ C ++++  Y K+  LD AL+   E+   G       Y+VL+  + R Q      
Sbjct: 596 QKLNEMCFSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQQDRRSII 655

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
            LL ++ + G  P   +  ++ D  A+AG  K A      + ++        +  +INGL
Sbjct: 656 DLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALINGL 715

Query: 548 LAGGFLQDAQ 557
              G +  A+
Sbjct: 716 CKIGLMDKAE 725



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 118/304 (38%), Gaps = 37/304 (12%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ LI  + KE  L +A R+  +M   GI P+  T T L+     A  +  A + F
Sbjct: 459 NVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLF 518

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +      P++  YN +I  +   G       L+D M+  G+      Y  L+      
Sbjct: 519 GEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCST 578

Query: 376 GDVRGAGQITNIMRIEEFQPTLESC-TLLVEAYGQAGDPDQA------------------ 416
           G V  A +  N ++ E+ Q   E C + L+  Y + G  D A                  
Sbjct: 579 GRVSEAREFMNDLQGEQ-QKLNEMCFSALLHGYCKEGRLDDALDACREMLGRGVAMDLVC 637

Query: 417 --------------RSNFDYMIRL---GHKPDDRCTASMIAAYGKKNLLDKALNLLLELE 459
                         RS  D + ++   G +PD+    +MI A  K   L  A  L   + 
Sbjct: 638 YSVLIYGILRQQDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMV 697

Query: 460 KDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEK 519
            +G  P   TYT L++ L ++ L+++AE L  ++      P         D     G  +
Sbjct: 698 SEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIE 757

Query: 520 KALQ 523
           KA+Q
Sbjct: 758 KAIQ 761



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 64/306 (20%), Positives = 129/306 (42%)

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           D   +++ M + GI+P I T + +++   +      A   F+ + S G +PD  VY +++
Sbjct: 163 DGLVVVRLMMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVV 222

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
            +            ++  M +SG + S   Y   +R   +   V  A +I N++  +  +
Sbjct: 223 RSLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLR 282

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
             + +   LV    +  + +      + MI  G  P +   ++++    KK  +  A +L
Sbjct: 283 ADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDL 342

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
           + +++K G  P    Y  L++ + +   ++EAE L   +   G  P       L D + +
Sbjct: 343 VNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCK 402

Query: 515 AGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERL 574
            G    AL  LG +     +     +  +I+G    G L+ A+ +   M A G   +  +
Sbjct: 403 RGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVI 462

Query: 575 KVALIS 580
             +LIS
Sbjct: 463 YTSLIS 468



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 77/342 (22%), Positives = 145/342 (42%), Gaps = 11/342 (3%)

Query: 226 INLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC-LED---AERILK 281
           +N L R+R+      F++A L L +E   + +R    +  A  +  C L+D   A  ++ 
Sbjct: 187 LNGLIRIRQ------FRMA-LHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIG 239

Query: 282 KMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAG 341
           +M  +G    + T  V +    K   +  A E    L   G + D   Y ++++      
Sbjct: 240 RMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVE 299

Query: 342 QPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCT 401
           + + G  +++ MI  G   SE     L+    + G++  A  + N ++     P+L    
Sbjct: 300 EFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYN 359

Query: 402 LLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD 461
            L+ +  + G  D+A S F+ M   G  P+D   + +I ++ K+  LD AL+ L ++ + 
Sbjct: 360 ALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEV 419

Query: 462 GFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKA 521
           G +     Y+ L+    +L  +  A+ L  ++   G  P   I  SL   Y + G    A
Sbjct: 420 GIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNA 479

Query: 522 LQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLM 563
            +    +  K        F  +I+GL     + +A ++ G M
Sbjct: 480 FRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEM 521



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/302 (23%), Positives = 121/302 (40%), Gaps = 42/302 (13%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTS------------------------ 295
           Y+ LI+ H KE     A  +L +M E G+VPD  T                         
Sbjct: 533 YNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQ 592

Query: 296 -----------TVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPK 344
                      + L+H Y K G LD A +A   +   G   D   Y+ +I   +     +
Sbjct: 593 GEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQQDRR 652

Query: 345 LGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
             + L+  M   G+     +Y  ++ + A+ G+++ A  + +IM  E   P + + T L+
Sbjct: 653 SIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALI 712

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL---LLELEKD 461
               + G  D+A      M+     P+    A  +     +  ++KA+ L   LLE    
Sbjct: 713 NGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLE---- 768

Query: 462 GFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKA 521
           GF     TY +L+    +L  I EA ++L  + + G +P      ++   Y R G  K+A
Sbjct: 769 GFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEA 828

Query: 522 LQ 523
           ++
Sbjct: 829 IK 830



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 67/326 (20%), Positives = 136/326 (41%), Gaps = 4/326 (1%)

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           +R  S +++   +      A  +  ++  +G+ PD+   T +V    +  +  RA+E   
Sbjct: 180 IRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIG 239

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
            + S G       YN  I       +    + + +++   G+      Y  L+    +  
Sbjct: 240 RMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVE 299

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
           +     ++ N M    F P+  + + LV+   + G+   A    + + + G  P      
Sbjct: 300 EFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYN 359

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
           ++I +  K   LD+A +L   +   G  P   TY++L+D   +   ++ A   LGK++E+
Sbjct: 360 ALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEV 419

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQ 554
           G         SL   + + G + +A ++L F E     + P+   +  +I+G    G L 
Sbjct: 420 GIKATVYPYSSLISGHCKLG-KLRAAKSL-FDEMIANGLKPNVVIYTSLISGYCKEGELH 477

Query: 555 DAQRVHGLMEAQGFAASERLKVALIS 580
           +A R++  M  +G + +     ALIS
Sbjct: 478 NAFRLYHEMTGKGISPNTYTFTALIS 503



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 89/186 (47%), Gaps = 12/186 (6%)

Query: 187 ITGKCKL-ITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRL-REQNTQLYFKVA 244
           I G CK+ + DK   L +E   S  L        P++  +   LD L  E N +   ++ 
Sbjct: 712 INGLCKIGLMDKAELLCREMLASNSL--------PNQNTYACFLDYLTSEGNIEKAIQLH 763

Query: 245 ELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK 304
           +++L  E F  N   Y+ LI    K   +++A  +L  M ++GI PD ++ + +++ Y +
Sbjct: 764 DVLL--EGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCR 821

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
            G+L  A + +ES+ + G  PD   YN +I      G+      L D M+  G++ +   
Sbjct: 822 RGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRAT 881

Query: 365 YLALLR 370
           Y +L+ 
Sbjct: 882 YNSLIH 887



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/250 (21%), Positives = 101/250 (40%), Gaps = 36/250 (14%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           +S L+  + KE  L+DA    ++M   G+  D+V  +VL++   +  +     +  + + 
Sbjct: 603 FSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQQDRRSIIDLLKQMH 662

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ----- 374
             G +PD  +Y +MI A   AG  K+   L D+M++ G   +   Y AL+    +     
Sbjct: 663 DQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALINGLCKIGLMD 722

Query: 375 -----C-------------------------GDVRGAGQITNIMRIEEFQPTLESCTLLV 404
                C                         G++  A Q+ +++ +E F     +  +L+
Sbjct: 723 KAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVL-LEGFLANTVTYNILI 781

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
             + + G   +A      MI  G  PD    +++I  Y ++  L +A+ L   +   G  
Sbjct: 782 RGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVN 841

Query: 465 PGPATYTVLV 474
           P    Y  L+
Sbjct: 842 PDTVAYNFLI 851



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/247 (21%), Positives = 113/247 (45%), Gaps = 7/247 (2%)

Query: 198 ILSLEKEEDPSPLLAEWKEL----LQPSRIDWINLLD-RLREQNTQLYFKVAELVLSEES 252
           I  + +++D   ++   K++    L+P  + +  ++D   +  N ++ F + ++++SE  
Sbjct: 642 IYGILRQQDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGC 701

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
              NV  Y+ LI+   K   ++ AE + ++M  +  +P+  T    +   +  GN+++A 
Sbjct: 702 LP-NVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAI 760

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           +  + L   GF  +   YN +I  +   G+ +    ++  MI SGI      Y  ++  +
Sbjct: 761 QLHDVLL-EGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEY 819

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + GD++ A ++   M      P   +   L+      G+  +A    D M+R G KP+ 
Sbjct: 820 CRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNR 879

Query: 433 RCTASMI 439
               S+I
Sbjct: 880 ATYNSLI 886


>gi|225446845|ref|XP_002279656.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
           mitochondrial-like [Vitis vinifera]
          Length = 844

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 130/272 (47%), Gaps = 7/272 (2%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI     +     A  + + M   G + D  T  +++   +K+G LD A + F+ ++
Sbjct: 287 YNSLITLFLNKGLPYKAFEVYESMEAAGCLLDGSTYELMIPSLAKSGRLDAAFKLFQEMK 346

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
               +P   V+ S++ +   AG+    M +   M   G+  S  +Y++L+ SF + G + 
Sbjct: 347 EKNLRPSFLVFASLVDSMGKAGRLDTSMKVYMEMQGFGLRPSATMYVSLIESFVKAGKLE 406

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A +I + M+   F+P     T++VE++ ++G  + A S F  M + G  P     + ++
Sbjct: 407 TALRIWDEMKKAGFRPNYGLYTMVVESHAKSGKLETAMSVFSDMEKAGFLPTPSTYSCLL 466

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             +     +D A+ L   +   G  PG +TYT L+  L   +L++ A ++L ++  +G  
Sbjct: 467 EMHSASGQVDSAMKLYNSMTNAGLRPGLSTYTALLTLLANKKLVDVAAKVLLEMKAMG-- 524

Query: 500 PPFKIQVSLCD---MYARAGIEKKALQALGFL 528
             F + VS  D   +Y + G    AL+ L F+
Sbjct: 525 --FSVDVSASDVLMVYIKDGSVDLALRWLRFM 554



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 130/294 (44%)

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
           + +++   +N  V  ++    +V   +KA  L+ A   F+ ++  G + D   YNS+I  
Sbjct: 234 DEMIRDSGDNNGVSSVIACNQVVRDLAKAEKLEVAFCCFKKVQDSGCKIDTATYNSLITL 293

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           ++N G P     + + M  +G       Y  ++ S A+ G +  A ++   M+ +  +P+
Sbjct: 294 FLNKGLPYKAFEVYESMEAAGCLLDGSTYELMIPSLAKSGRLDAAFKLFQEMKEKNLRPS 353

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
                 LV++ G+AG  D +   +  M   G +P      S+I ++ K   L+ AL +  
Sbjct: 354 FLVFASLVDSMGKAGRLDTSMKVYMEMQGFGLRPSATMYVSLIESFVKAGKLETALRIWD 413

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
           E++K GF P    YT++V+   +   +  A  +   + + G  P       L +M++ +G
Sbjct: 414 EMKKAGFRPNYGLYTMVVESHAKSGKLETAMSVFSDMEKAGFLPTPSTYSCLLEMHSASG 473

Query: 517 IEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAA 570
               A++    +     + G   +  ++  L     +  A +V   M+A GF+ 
Sbjct: 474 QVDSAMKLYNSMTNAGLRPGLSTYTALLTLLANKKLVDVAAKVLLEMKAMGFSV 527



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 121/266 (45%), Gaps = 6/266 (2%)

Query: 268 AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK 327
           AK   LE A    KK+ ++G   D  T   L+ ++   G   +A E +ES+ + G   D 
Sbjct: 260 AKAEKLEVAFCCFKKVQDSGCKIDTATYNSLITLFLNKGLPYKAFEVYESMEAAGCLLDG 319

Query: 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNI 387
             Y  MI +   +G+      L   M    +  S  ++ +L+ S  + G +  + ++   
Sbjct: 320 STYELMIPSLAKSGRLDAAFKLFQEMKEKNLRPSFLVFASLVDSMGKAGRLDTSMKVYME 379

Query: 388 MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447
           M+    +P+      L+E++ +AG  + A   +D M + G +P+      ++ ++ K   
Sbjct: 380 MQGFGLRPSATMYVSLIESFVKAGKLETALRIWDEMKKAGFRPNYGLYTMVVESHAKSGK 439

Query: 448 LDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVS 507
           L+ A+++  ++EK GF P P+TY+ L++       ++ A +L   ++  G  P      +
Sbjct: 440 LETAMSVFSDMEKAGFLPTPSTYSCLLEMHSASGQVDSAMKLYNSMTNAGLRPGLSTYTA 499

Query: 508 LCDMYARAGIEKKA------LQALGF 527
           L  + A   +   A      ++A+GF
Sbjct: 500 LLTLLANKKLVDVAAKVLLEMKAMGF 525



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/215 (21%), Positives = 94/215 (43%), Gaps = 1/215 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E++ + +   ++ L+D+  K   L+ + ++  +M   G+ P       L+  + KAG 
Sbjct: 345 MKEKNLRPSFLVFASLVDSMGKAGRLDTSMKVYMEMQGFGLRPSATMYVSLIESFVKAGK 404

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L+ A   ++ ++  GF+P+  +Y  ++ ++  +G+ +  MS+   M  +G   +   Y  
Sbjct: 405 LETALRIWDEMKKAGFRPNYGLYTMVVESHAKSGKLETAMSVFSDMEKAGFLPTPSTYSC 464

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           LL   +  G V  A ++ N M     +P L + T L+         D A      M  +G
Sbjct: 465 LLEMHSASGQVDSAMKLYNSMTNAGLRPGLSTYTALLTLLANKKLVDVAAKVLLEMKAMG 524

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
               D   + ++  Y K   +D AL  L  +   G
Sbjct: 525 FSV-DVSASDVLMVYIKDGSVDLALRWLRFMGSSG 558


>gi|224127136|ref|XP_002329409.1| predicted protein [Populus trichocarpa]
 gi|222870459|gb|EEF07590.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 95/410 (23%), Positives = 159/410 (38%), Gaps = 83/410 (20%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E   + ++  Y+ L++       +E AER+L+ M    I PD+VT   ++  Y + G 
Sbjct: 158 MKENGVEPSLFTYNFLLNGLVNSVFIESAERVLEVMENGKIGPDVVTYNTMIKGYCQVGK 217

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL------------------ 349
             +A E F  +      PDK  Y ++I A    G   L +SL                  
Sbjct: 218 TQKAFEKFRDMELRNVAPDKITYMTLIQACYAEGDFDLCLSLYHEMDENGLEIPPHAYSL 277

Query: 350 -----------------VDMMITSGIERSEEIYLALLRSFAQCG---------------- 376
                             + MI  G + +  IY AL+ S A+CG                
Sbjct: 278 VIGGLCKEGKCVEGYAVFEKMIQKGCKVNVAIYTALIDSNAKCGNMGEAMLLFERMKKEG 337

Query: 377 ---DVRGAGQITNIM----RIEEFQPTLESCTL------------LVEAYGQAGDPDQAR 417
              DV   G + N M    R++E    LE C +            L++  G+AG   +A 
Sbjct: 338 LEPDVVTYGVVVNCMCKSGRLDEAMEYLEFCRVNGVAVNAMLYSSLIDGLGKAGRVHEAE 397

Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
             F+ M++ G  PD  C  ++I A  K    D+AL     +E +G +    TYT++++ L
Sbjct: 398 KLFEEMVKKGCPPDSYCYNALIDALAKCGKTDEALAFFKRMEDEGCDQTVYTYTIMINGL 457

Query: 478 GRLQLINEAEQLLGKISELGEAP------PFKIQVSLCDMYARAGIEKKALQALGFLEAK 531
            R     EA ++   + + G  P         I + L    ARA      L  +G +   
Sbjct: 458 FREHKNEEALKMWDMMIDKGITPTAAAFRALSIGLCLSGKVARACKLLDELAPMGVIPET 517

Query: 532 KEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
                   FE ++N L   G +++A ++      +G     R++  LI++
Sbjct: 518 A-------FEDMLNVLCKAGRIKEACKLADGFVDRGREIPGRVRTVLINA 560



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 126/276 (45%), Gaps = 1/276 (0%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           ++  + NV  Y+ LID++AK   + +A  + ++M + G+ PD+VT  V+V+   K+G LD
Sbjct: 300 QKGCKVNVAIYTALIDSNAKCGNMGEAMLLFERMKKEGLEPDVVTYGVVVNCMCKSGRLD 359

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A E  E  R +G   +  +Y+S+I     AG+      L + M+  G       Y AL+
Sbjct: 360 EAMEYLEFCRVNGVAVNAMLYSSLIDGLGKAGRVHEAEKLFEEMVKKGCPPDSYCYNALI 419

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
            + A+CG    A      M  E    T+ + T+++    +    ++A   +D MI  G  
Sbjct: 420 DALAKCGKTDEALAFFKRMEDEGCDQTVYTYTIMINGLFREHKNEEALKMWDMMIDKGIT 479

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           P      ++         + +A  LL EL   G  P  A +  +++ L +   I EA +L
Sbjct: 480 PTAAAFRALSIGLCLSGKVARACKLLDELAPMGVIPETA-FEDMLNVLCKAGRIKEACKL 538

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
                + G   P +++  L +   +AG    AL+ +
Sbjct: 539 ADGFVDRGREIPGRVRTVLINALRKAGNADLALKLM 574



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/332 (17%), Positives = 134/332 (40%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           ++ +  N++ Y   ID  A    L++ + +  K    G + ++  +  L+  +   G ++
Sbjct: 90  QKKYTHNLQCYVSSIDVLAINGDLDNVKSVFCKFRGMGFLMNVSAANSLIKSFGSLGMVE 149

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
                +  ++ +G +P    YN ++   VN+   +    ++++M    I      Y  ++
Sbjct: 150 ELLWVWRGMKENGVEPSLFTYNFLLNGLVNSVFIESAERVLEVMENGKIGPDVVTYNTMI 209

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
           + + Q G  + A +    M +    P   +   L++A    GD D   S +  M   G +
Sbjct: 210 KGYCQVGKTQKAFEKFRDMELRNVAPDKITYMTLIQACYAEGDFDLCLSLYHEMDENGLE 269

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
                 + +I    K+    +   +  ++ + G +   A YT L+D   +   + EA  L
Sbjct: 270 IPPHAYSLVIGGLCKEGKCVEGYAVFEKMIQKGCKVNVAIYTALIDSNAKCGNMGEAMLL 329

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLA 549
             ++ + G  P       + +   ++G   +A++ L F       +    +  +I+GL  
Sbjct: 330 FERMKKEGLEPDVVTYGVVVNCMCKSGRLDEAMEYLEFCRVNGVAVNAMLYSSLIDGLGK 389

Query: 550 GGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
            G + +A+++   M  +G         ALI +
Sbjct: 390 AGRVHEAEKLFEEMVKKGCPPDSYCYNALIDA 421


>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
          Length = 722

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 123/285 (43%), Gaps = 6/285 (2%)

Query: 219 QPSRIDWINLLDRLREQNTQLYFKVAELVLSEES---FQTNVRDYSKLIDAHAKENCLED 275
           +P+ I +  L+DR  ++      + A  VL E S      N   Y+ LI A  K+  ++D
Sbjct: 421 EPNVITYTILIDRFCKEGR---LEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQD 477

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A  +   M+  G  PDI T   L+    K    + A   ++ +   G   +   YN++I 
Sbjct: 478 ALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIH 537

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
           A++  G  +  + LV+ M+  G    +  Y  L+++  + G++     +   M  +   P
Sbjct: 538 AFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNP 597

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
              SC +L+    + G+   A      MI  G  PD     S+I    K     +ALNL 
Sbjct: 598 NNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLF 657

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
            +L+ +G  P   TY  L+ W  +  + ++A  LL +  + G  P
Sbjct: 658 DKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIP 702



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 88/374 (23%), Positives = 149/374 (39%), Gaps = 27/374 (7%)

Query: 212 AEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVL----SEESFQ--------TNVRD 259
            EW+ LL+P   D   L   L         K+ EL L    S E FQ         ++ D
Sbjct: 55  TEWERLLKP--FDLPELRTSLTRITPYQLCKLLELPLDVPTSMELFQWAGTQKGYCHMFD 112

Query: 260 -YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318
            Y  LID        +  + +L +M + GIV       +++  Y +AG   +A      +
Sbjct: 113 VYYMLIDKLGAAGEFKTIDALLMQMKQEGIVFRESLFILIMKHYGRAGLPGQATRLLLDM 172

Query: 319 RS-HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
           R  +  +P  + YN ++   +    PK+  ++   M++ GI  +   +  ++++     +
Sbjct: 173 RGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNE 232

Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
           V  A  +   M      P       L+ A  + G  ++     + M+ +G  PD      
Sbjct: 233 VDSACALLKDMTRHGCVPNAIVYQTLIHALXKVGRVNEVLKLLEEMLLMGCIPDVNTFND 292

Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
            I    K   + +A  L+  +   GF P   TY VL+  L R+  ++EA  LL K+    
Sbjct: 293 AIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPN-- 350

Query: 498 EAPPFKIQVSLCDMYARAG--IEKKALQALGFLEAKKEQMGPDDF--ERIINGLLAGGFL 553
             P   +  +L + Y   G   E KA+     L       GPD F    +I GL   G+L
Sbjct: 351 --PNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVG---CGPDIFTYNTLILGLCKKGYL 405

Query: 554 QDAQRVHGLMEAQG 567
             A+ +   M+ +G
Sbjct: 406 VSARELMNEMQIKG 419



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 75/364 (20%), Positives = 142/364 (39%), Gaps = 40/364 (10%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERIL-KKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA 314
           NV  ++ LI+ +     L++A+ ++ + M   G  PDI T   L+    K G L  A+E 
Sbjct: 352 NVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSAREL 411

Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
              ++  G +P+   Y  +I  +   G+ +   +++D M   G+  +   Y  L+ +  +
Sbjct: 412 MNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCK 471

Query: 375 ----------CGDVRGAGQ----------ITNIMRIEEFQPTLE---------------S 399
                      GD+   G           I  + ++ +F+  L                +
Sbjct: 472 DEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTIT 531

Query: 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELE 459
              L+ A+ + G   +A    + M+  G   DD     +I A  +   ++K L L  ++ 
Sbjct: 532 YNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMM 591

Query: 460 KDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEK 519
             G  P   +  +L++ L R   I  A + L  +   G  P      SL +   + G  +
Sbjct: 592 SKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQ 651

Query: 520 KALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVA 577
           +AL    F + + E + PD   +  +I+     G   DA  +       GF  +E     
Sbjct: 652 EALNL--FDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYI 709

Query: 578 LISS 581
           L+S+
Sbjct: 710 LVSN 713



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 52/115 (45%)

Query: 263 LIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG 322
           LI+   +   ++ A   L+ M   G+ PDIVT   L++   K G    A   F+ L+  G
Sbjct: 605 LINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEG 664

Query: 323 FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
             PD   YN++I  +   G       L+   + SG   +E  +  L+ +F + GD
Sbjct: 665 ICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEGD 719


>gi|26452823|dbj|BAC43491.1| putative salt-inducible protein [Arabidopsis thaliana]
          Length = 702

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 118/267 (44%), Gaps = 1/267 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+  +    K   LE +E++  +M E GI PD  T T ++    + G   RA E FE + 
Sbjct: 178 YNVTMKVFRKSKDLEKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKMS 237

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           S G +PD     +MI AY  AG   + +SL D   T         +  L+R +   G+  
Sbjct: 238 SFGCEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYD 297

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
           G   I   M+    +P L     L+++ G+A  P QA+  +  +I  G  P+    A+++
Sbjct: 298 GCLNIYEEMKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALV 357

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            AYG+    D AL +  E+++ G       Y  L+     +  ++EA ++   +      
Sbjct: 358 RAYGRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADIGYVDEAFEIFQDMKNCETC 417

Query: 500 PPFKIQV-SLCDMYARAGIEKKALQAL 525
            P      SL  +YA +G   +A  AL
Sbjct: 418 DPDSWTFSSLITVYACSGRVSEAEAAL 444



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/302 (21%), Positives = 139/302 (46%), Gaps = 7/302 (2%)

Query: 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV 350
           +++   V + ++ K+ +L+++++ F+ +   G +PD   + ++I      G PK  +   
Sbjct: 174 EVILYNVTMKVFRKSKDLEKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVEWF 233

Query: 351 DMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410
           + M + G E       A++ ++ + G+V  A  + +  R E+++    + + L+  YG +
Sbjct: 234 EKMSSFGCEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVS 293

Query: 411 GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATY 470
           G+ D   + ++ M  LG KP+      +I + G+     +A  +  +L  +GF P  +TY
Sbjct: 294 GNYDGCLNIYEEMKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTY 353

Query: 471 TVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEA 530
             LV   GR +  ++A  +  ++ E G +    +  +L  M A  G   +A +   F + 
Sbjct: 354 AALVRAYGRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADIGYVDEAFEI--FQDM 411

Query: 531 KK-EQMGPDD--FERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQ 587
           K  E   PD   F  +I      G + +A+     M   GF  +  +  ++I  Q + + 
Sbjct: 412 KNCETCDPDSWTFSSLITVYACSGRVSEAEAALLQMREAGFEPTLFVLTSVI--QCYGKA 469

Query: 588 RQ 589
           +Q
Sbjct: 470 KQ 471



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 61/277 (22%), Positives = 123/277 (44%), Gaps = 2/277 (0%)

Query: 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320
           + +IDA+ +   ++ A  +  +        D VT + L+ +Y  +GN D     +E +++
Sbjct: 249 AAMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKA 308

Query: 321 HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRG 380
            G +P+  +YN +I +   A +P     +   +IT+G   +   Y AL+R++ +      
Sbjct: 309 LGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDD 368

Query: 381 AGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL-GHKPDDRCTASMI 439
           A  I   M+ +    T+     L+      G  D+A   F  M       PD    +S+I
Sbjct: 369 ALAIYREMKEKGLSLTVILYNTLLSMCADIGYVDEAFEIFQDMKNCETCDPDSWTFSSLI 428

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             Y     + +A   LL++ + GFEP     T ++   G+ + +++  +   ++ ELG  
Sbjct: 429 TVYACSGRVSEAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGIT 488

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG 536
           P  +    L ++  +   E+   + +G +E  K ++G
Sbjct: 489 PDDRFCGCLLNVMTQTPSEEIG-KLIGCVEKAKPKLG 524



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 92/223 (41%), Gaps = 36/223 (16%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           ++P+ + +  L+D +         K+    L    F  N   Y+ L+ A+ +    +DA 
Sbjct: 311 VKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDAL 370

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS-HGFQPDKKVYNSMIMA 336
            I ++M E G+   ++    L+ M +  G +D A E F+ +++     PD   ++S+I  
Sbjct: 371 AIYREMKEKGLSLTVILYNTLLSMCADIGYVDEAFEIFQDMKNCETCDPDSWTFSSLITV 430

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           Y  +G                  R  E   ALL+                 MR   F+PT
Sbjct: 431 YACSG------------------RVSEAEAALLQ-----------------MREAGFEPT 455

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
           L   T +++ YG+A   D     FD ++ LG  PDDR    ++
Sbjct: 456 LFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGCLL 498



 Score = 42.0 bits (97), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 1/128 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKM-NENGIVPDIVTSTVLVHMYSKAG 306
           + E+     V  Y+ L+   A    +++A  I + M N     PD  T + L+ +Y+ +G
Sbjct: 376 MKEKGLSLTVILYNTLLSMCADIGYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSG 435

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            +  A+ A   +R  GF+P   V  S+I  Y  A Q    +   D ++  GI   +    
Sbjct: 436 RVSEAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCG 495

Query: 367 ALLRSFAQ 374
            LL    Q
Sbjct: 496 CLLNVMTQ 503



 Score = 40.4 bits (93), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 15/128 (11%)

Query: 241 FKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
           F++ + + + E+   +   +S LI  +A    + +AE  L +M E G  P +   T ++ 
Sbjct: 405 FEIFQDMKNCETCDPDSWTFSSLITVYACSGRVSEAEAALLQMREAGFEPTLFVLTSVIQ 464

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM--------------IMAYVNAGQPKLG 346
            Y KA  +D     F+ +   G  PD +    +              ++  V   +PKLG
Sbjct: 465 CYGKAKQVDDVVRTFDQVLELGITPDDRFCGCLLNVMTQTPSEEIGKLIGCVEKAKPKLG 524

Query: 347 MSLVDMMI 354
             +V M++
Sbjct: 525 -QVVKMLV 531


>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
          Length = 819

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 138/313 (44%), Gaps = 4/313 (1%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           +LS +  + +V  Y  L+    K    E  E ++ +M E G VP     + LV    K G
Sbjct: 275 LLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKG 334

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           N+  A +    ++  G  P   VYN++I +    G+     SL + M   G+  ++  Y 
Sbjct: 335 NIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYS 394

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+ SF + G +  A      M     + T+   + L+  + + G    A+S FD MI  
Sbjct: 395 ILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIAN 454

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G KP+     S+I+ Y K+  L  A  L  E+   G  P   T+T L+  L     + EA
Sbjct: 455 GLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEA 514

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFER--II 544
            +L G++ E    P       L + + + G   +A + L   E  ++ + PD +    +I
Sbjct: 515 NKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLD--EMVEKGLVPDTYTYRPLI 572

Query: 545 NGLLAGGFLQDAQ 557
           +GL + G + +A+
Sbjct: 573 SGLCSTGRVSEAR 585



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 114/272 (41%), Gaps = 8/272 (2%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS LID+  K   L+ A   L KM E GI   +   + L+  + K G L  AK  F+ + 
Sbjct: 393 YSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMI 452

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           ++G +P+  +Y S+I  Y   G+      L   M   GI  +   + AL+        + 
Sbjct: 453 ANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMA 512

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++   M      P   +  +L+E + + G+  +A    D M+  G  PD      +I
Sbjct: 513 EANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLI 572

Query: 440 AAYGKKNLLDKALNLLLEL--------EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
           +       + +A   + +L        E +G  P   TYT L++ L ++ L+++AE L  
Sbjct: 573 SGLCSTGRVSEAREFMNDLQGEQQKLNEIEGCLPNVVTYTALINGLCKIGLMDKAELLCR 632

Query: 492 KISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
           ++      P         D     G  +KA+Q
Sbjct: 633 EMLASNSLPNQNTYACFLDYLTSEGNIEKAIQ 664



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 115/279 (41%), Gaps = 15/279 (5%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ LI  + KE  L +A R+  +M   GI P+  T T L+     A  +  A + F
Sbjct: 459 NVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLF 518

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +      P++  YN +I  +   G       L+D M+  G+      Y  L+      
Sbjct: 519 GEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCST 578

Query: 376 GDVRGAGQITNIMR--------IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           G V  A +  N ++        IE   P + + T L+    + G  D+A      M+   
Sbjct: 579 GRVSEAREFMNDLQGEQQKLNEIEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASN 638

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNL---LLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
             P+    A  +     +  ++KA+ L   LLE    GF     TY +L+    +L  I 
Sbjct: 639 SLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLE----GFLANTVTYNILIRGFCKLGRIQ 694

Query: 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
           EA ++L  + + G +P      ++   Y R G  K+A++
Sbjct: 695 EAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIK 733



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 64/306 (20%), Positives = 129/306 (42%)

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           D   +++ M + GI+P I T + +++   +      A   F+ + S G +PD  VY +++
Sbjct: 163 DGLVVVRLMMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVV 222

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
            +            ++  M +SG + S   Y   +R   +   V  A +I N++  +  +
Sbjct: 223 RSLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLR 282

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
             + +   LV    +  + +      + MI  G  P +   ++++    KK  +  A +L
Sbjct: 283 ADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDL 342

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
           + +++K G  P    Y  L++ + +   ++EAE L   +   G  P       L D + +
Sbjct: 343 VNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCK 402

Query: 515 AGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERL 574
            G    AL  LG +     +     +  +I+G    G L+ A+ +   M A G   +  +
Sbjct: 403 RGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVI 462

Query: 575 KVALIS 580
             +LIS
Sbjct: 463 YTSLIS 468



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 77/342 (22%), Positives = 145/342 (42%), Gaps = 11/342 (3%)

Query: 226 INLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC-LED---AERILK 281
           +N L R+R+      F++A L L +E   + +R    +  A  +  C L+D   A  ++ 
Sbjct: 187 LNGLIRIRQ------FRMA-LHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIG 239

Query: 282 KMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAG 341
           +M  +G    + T  V +    K   +  A E    L   G + D   Y ++++      
Sbjct: 240 RMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVE 299

Query: 342 QPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCT 401
           + + G  +++ MI  G   SE     L+    + G++  A  + N ++     P+L    
Sbjct: 300 EFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYN 359

Query: 402 LLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD 461
            L+ +  + G  D+A S F+ M   G  P+D   + +I ++ K+  LD AL+ L ++ + 
Sbjct: 360 ALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEV 419

Query: 462 GFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKA 521
           G +     Y+ L+    +L  +  A+ L  ++   G  P   I  SL   Y + G    A
Sbjct: 420 GIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNA 479

Query: 522 LQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLM 563
            +    +  K        F  +I+GL     + +A ++ G M
Sbjct: 480 FRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEM 521



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 67/326 (20%), Positives = 136/326 (41%), Gaps = 4/326 (1%)

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           +R  S +++   +      A  +  ++  +G+ PD+   T +V    +  +  RA+E   
Sbjct: 180 IRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIG 239

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
            + S G       YN  I       +    + + +++   G+      Y  L+    +  
Sbjct: 240 RMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVE 299

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
           +     ++ N M    F P+  + + LV+   + G+   A    + + + G  P      
Sbjct: 300 EFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYN 359

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
           ++I +  K   LD+A +L   +   G  P   TY++L+D   +   ++ A   LGK++E+
Sbjct: 360 ALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEV 419

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQ 554
           G         SL   + + G + +A ++L F E     + P+   +  +I+G    G L 
Sbjct: 420 GIKATVYPYSSLISGHCKLG-KLRAAKSL-FDEMIANGLKPNVVIYTSLISGYCKEGELH 477

Query: 555 DAQRVHGLMEAQGFAASERLKVALIS 580
           +A R++  M  +G + +     ALIS
Sbjct: 478 NAFRLYHEMTGKGISPNTYTFTALIS 503



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 89/186 (47%), Gaps = 12/186 (6%)

Query: 187 ITGKCKL-ITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRL-REQNTQLYFKVA 244
           I G CK+ + DK   L +E   S  L        P++  +   LD L  E N +   ++ 
Sbjct: 615 INGLCKIGLMDKAELLCREMLASNSL--------PNQNTYACFLDYLTSEGNIEKAIQLH 666

Query: 245 ELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK 304
           +++L  E F  N   Y+ LI    K   +++A  +L  M ++GI PD ++ + +++ Y +
Sbjct: 667 DVLL--EGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCR 724

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
            G+L  A + +ES+ + G  PD   YN +I      G+      L D M+  G++ +   
Sbjct: 725 RGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRAT 784

Query: 365 YLALLR 370
           Y +L+ 
Sbjct: 785 YNSLIH 790



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 82/184 (44%), Gaps = 1/184 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ LI+   K   ++ AE + ++M  +  +P+  T    +   +  GN+++A +  
Sbjct: 607 NVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLH 666

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + L   GF  +   YN +I  +   G+ +    ++  MI SGI      Y  ++  + + 
Sbjct: 667 DVLL-EGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRR 725

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           GD++ A ++   M      P   +   L+      G+  +A    D M+R G KP+    
Sbjct: 726 GDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATY 785

Query: 436 ASMI 439
            S+I
Sbjct: 786 NSLI 789


>gi|413934035|gb|AFW68586.1| hypothetical protein ZEAMMB73_127077 [Zea mays]
          Length = 800

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 100/379 (26%), Positives = 169/379 (44%), Gaps = 19/379 (5%)

Query: 220 PSRIDWINLLDRLREQNTQL-YFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAER 278
           P+R  +  L+  L ++ T +   K+ + ++S      NV+ ++ L+ +      L++AE 
Sbjct: 209 PNRATYNVLIHGLCKRGTPVDALKLFDEMISR-GITPNVKTHTILLSSMCNAGQLKEAEN 267

Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG-FQPDKKVYNSMIMAY 337
           +L  M + G  PD VT    +    KAG +D A E  E+LR  G F    K Y+ +I   
Sbjct: 268 LLHSMEDKGCPPDEVTYNAFLSGLCKAGRVDEAIERLEALRHTGTFVLGLKGYSCLIDGL 327

Query: 338 VNAGQPKLGM-SLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
             AG+ + G    ++++  + +     +Y  ++R  A+ G    A    + M+ + F P 
Sbjct: 328 FLAGRYEEGFQCYMEVLEQADVSPDIVLYTIMIRGCAEAGRTNDAFAFFDEMKEKGFTPD 387

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
                 L++A   AGD D ARS    M+R     D     +MI    K+ L+D+A+ +  
Sbjct: 388 TFCYNTLLKALCDAGDLDGARSLMSEMVRNNVVLDIHTYTTMIIGLCKEQLVDEAMQVFD 447

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
            + + G  P   TY VL+D L R   + EA  L  K+ E+G  P   ++++L     R  
Sbjct: 448 GMVEVGCHPSVMTYNVLIDGLYRAHRLEEARMLFYKM-EVGNNPSLFLRLTLGANQVRDS 506

Query: 517 -----IEKKALQALGFLEAKKEQMG-------PD--DFERIINGLLAGGFLQDAQRVHGL 562
                + +   Q+   L+A K   G       PD   +  ++NGL     L  A R+   
Sbjct: 507 ETLQKLVESMCQSGQVLKAYKLLRGIIDSGVVPDVVTYNTLLNGLCKVRNLDGALRLFRE 566

Query: 563 MEAQGFAASERLKVALISS 581
           ++ +GF   E     LI S
Sbjct: 567 LQVKGFPLDEITYGTLIDS 585



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 114/307 (37%), Gaps = 24/307 (7%)

Query: 223 IDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKK 282
           ID + L  R  E+  Q Y +V E    +     ++  Y+ +I   A+     DA     +
Sbjct: 324 IDGLFLAGR-YEEGFQCYMEVLE----QADVSPDIVLYTIMIRGCAEAGRTNDAFAFFDE 378

Query: 283 MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
           M E G  PD      L+     AG+LD A+     +  +    D   Y +MI+       
Sbjct: 379 MKEKGFTPDTFCYNTLLKALCDAGDLDGARSLMSEMVRNNVVLDIHTYTTMIIGLCKEQL 438

Query: 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL----- 397
               M + D M+  G   S   Y  L+    +   +  A  +   M +    P+L     
Sbjct: 439 VDEAMQVFDGMVEVGCHPSVMTYNVLIDGLYRAHRLEEARMLFYKMEVGN-NPSLFLRLT 497

Query: 398 ---------ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLL 448
                    E+   LVE+  Q+G   +A      +I  G  PD     +++    K   L
Sbjct: 498 LGANQVRDSETLQKLVESMCQSGQVLKAYKLLRGIIDSGVVPDVVTYNTLLNGLCKVRNL 557

Query: 449 DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKI---- 504
           D AL L  EL+  GF     TY  L+D L R    N+A  L   I   G  P   I    
Sbjct: 558 DGALRLFRELQVKGFPLDEITYGTLIDSLLRAHRYNDALTLFQDILHSGGTPSMPIYNSM 617

Query: 505 QVSLCDM 511
             SLC M
Sbjct: 618 MRSLCRM 624



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 116/292 (39%), Gaps = 18/292 (6%)

Query: 283 MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
           ++   +VP ++ +     MY          +A    ++ G QP    + ++I A+ +AG+
Sbjct: 105 LHSRAVVPILLATDADAAMY----------DAIADAQAAGLQPPTAAFEALIFAHASAGR 154

Query: 343 PKLGMSLVDMMITS-GIERSEEIYLALLRSF-AQCGDVRGAGQITNIMRIEEFQPTLESC 400
               +     M    G   +  +Y A+LR   A  G V  A  + N M      P   + 
Sbjct: 155 HHEAVEAFSRMEGEFGCRPTTFVYNAVLRVLVASGGAVPLALALYNRMVAAGCLPNRATY 214

Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
            +L+    + G P  A   FD MI  G  P+ +    ++++      L +A NLL  +E 
Sbjct: 215 NVLIHGLCKRGTPVDALKLFDEMISRGITPNVKTHTILLSSMCNAGQLKEAENLLHSMED 274

Query: 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE-APPFKIQVSLCDMYARAGIEK 519
            G  P   TY   +  L +   ++EA + L  +   G      K    L D    AG  +
Sbjct: 275 KGCPPDEVTYNAFLSGLCKAGRVDEAIERLEALRHTGTFVLGLKGYSCLIDGLFLAGRYE 334

Query: 520 KALQALGFLEA-KKEQMGPDD--FERIINGLLAGGFLQDAQRVHGLMEAQGF 568
           +  Q   ++E  ++  + PD   +  +I G    G   DA      M+ +GF
Sbjct: 335 EGFQC--YMEVLEQADVSPDIVLYTIMIRGCAEAGRTNDAFAFFDEMKEKGF 384



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 106/295 (35%), Gaps = 47/295 (15%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKM-NENGIVPD-IVTSTVLVHMYSKAGNLDR 310
            Q     +  LI AHA      +A     +M  E G  P   V + VL  + +  G +  
Sbjct: 135 LQPPTAAFEALIFAHASAGRHHEAVEAFSRMEGEFGCRPTTFVYNAVLRVLVASGGAVPL 194

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A   +  + + G  P++  YN +I      G P   + L D MI+ GI            
Sbjct: 195 ALALYNRMVAAGCLPNRATYNVLIHGLCKRGTPVDALKLFDEMISRGI------------ 242

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
                                   P +++ T+L+ +   AG   +A +    M   G  P
Sbjct: 243 -----------------------TPNVKTHTILLSSMCNAGQLKEAENLLHSMEDKGCPP 279

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDG-FEPGPATYTVLVDWLGRLQLINEAEQL 489
           D+    + ++   K   +D+A+  L  L   G F  G   Y+ L+D L       E  Q 
Sbjct: 280 DEVTYNAFLSGLCKAGRVDEAIERLEALRHTGTFVLGLKGYSCLIDGLFLAGRYEEGFQC 339

Query: 490 LGKISELGEAPP----FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF 540
             ++ E  +  P    + I +  C   A AG    A     F E K++   PD F
Sbjct: 340 YMEVLEQADVSPDIVLYTIMIRGC---AEAGRTNDAFAF--FDEMKEKGFTPDTF 389



 Score = 42.0 bits (97), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 43/213 (20%), Positives = 90/213 (42%), Gaps = 15/213 (7%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           ++  Y+ +I    KE  +++A ++   M E G  P ++T  VL+    +A  L+ A+  F
Sbjct: 422 DIHTYTTMIIGLCKEQLVDEAMQVFDGMVEVGCHPSVMTYNVLIDGLYRAHRLEEARMLF 481

Query: 316 ESLRSHGFQP--------------DKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS 361
             +   G  P              D +    ++ +   +GQ      L+  +I SG+   
Sbjct: 482 YKMEV-GNNPSLFLRLTLGANQVRDSETLQKLVESMCQSGQVLKAYKLLRGIIDSGVVPD 540

Query: 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421
              Y  LL    +  ++ GA ++   ++++ F     +   L+++  +A   + A + F 
Sbjct: 541 VVTYNTLLNGLCKVRNLDGALRLFRELQVKGFPLDEITYGTLIDSLLRAHRYNDALTLFQ 600

Query: 422 YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
            ++  G  P      SM+ +  +   L +A+NL
Sbjct: 601 DILHSGGTPSMPIYNSMMRSLCRMQKLSQAINL 633


>gi|3128231|gb|AAC26711.1| hypothetical protein [Arabidopsis thaliana]
 gi|20197159|gb|AAM14947.1| hypothetical protein [Arabidopsis thaliana]
          Length = 617

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 110/247 (44%), Gaps = 8/247 (3%)

Query: 287 GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLG 346
           G+  D+  +  L+ MY+K G +  A++ F+ +     + D   +NSMI  Y  AG  K  
Sbjct: 158 GLERDVHINHSLIMMYAKCGQVGYARKLFDEIT----ERDTVSWNSMISGYSEAGYAKDA 213

Query: 347 MSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA 406
           M L   M   G E  E   +++L + +  GD+R    +  +   ++   +    + L+  
Sbjct: 214 MDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLISM 273

Query: 407 YGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG 466
           YG+ GD D AR  F+ MI    K D     +MI  Y +     +A  L  E+EK G  P 
Sbjct: 274 YGKCGDLDSARRVFNQMI----KKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPD 329

Query: 467 PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALG 526
             T + ++   G +  +   +Q+    SEL       +   L DMY + G  ++AL+   
Sbjct: 330 AGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFE 389

Query: 527 FLEAKKE 533
            +  K E
Sbjct: 390 AMPVKNE 396



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/286 (21%), Positives = 136/286 (47%), Gaps = 29/286 (10%)

Query: 214 WKELLQPSRIDWINLLDRLREQN------TQLYFKVAELVLSEESFQTNVRDYSKLIDAH 267
           + ++++  R+ W  ++  +  QN       +L+F++ +  +S ++        S ++ A 
Sbjct: 287 FNQMIKKDRVAWTAMIT-VYSQNGKSSEAFKLFFEMEKTGVSPDA-----GTLSTVLSAC 340

Query: 268 AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK 327
                LE  ++I    +E  +  +I  +T LV MY K G ++ A   FE++       ++
Sbjct: 341 GSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPV----KNE 396

Query: 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV-RGAGQITN 386
             +N+MI AY + G  K  + L D M    +  S+  ++ +L +    G V +G      
Sbjct: 397 ATWNAMITAYAHQGHAKEALLLFDRM---SVPPSDITFIGVLSACVHAGLVHQGCRYFHE 453

Query: 387 IMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKN 446
           +  +    P +E  T +++   +AG  D+A   +++M R   KPD+   A+++ A  K+ 
Sbjct: 454 MSSMFGLVPKIEHYTNIIDLLSRAGMLDEA---WEFMERFPGKPDEIMLAAILGACHKRK 510

Query: 447 ---LLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
              + +KA+ +L+E+++         Y +  + L  +++ +E+ ++
Sbjct: 511 DVAIREKAMRMLMEMKE---AKNAGNYVISSNVLADMKMWDESAKM 553



 Score = 38.9 bits (89), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 71/167 (42%), Gaps = 26/167 (15%)

Query: 419 NFDYMIR-LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
           +F+YMIR L +  +D                + AL+L   ++  G +P   TY  +    
Sbjct: 94  SFNYMIRGLTNTWNDH---------------EAALSLYRRMKFSGLKPDKFTYNFVFIAC 138

Query: 478 GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP 537
            +L+ I     +   + ++G      I  SL  MYA+ G        +G+     +++  
Sbjct: 139 AKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCG-------QVGYARKLFDEITE 191

Query: 538 DD---FERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
            D   +  +I+G    G+ +DA  +   ME +GF   ER  V+++ +
Sbjct: 192 RDTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGA 238


>gi|225450007|ref|XP_002272339.1| PREDICTED: pentatricopeptide repeat-containing protein At2g19280
           [Vitis vinifera]
          Length = 644

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 146/326 (44%), Gaps = 7/326 (2%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ +ID+  K + L++A  IL KM + G+  D V+ + +V  Y K G   +++EA 
Sbjct: 255 DVVAYTIVIDSLCKMSLLKEATSILFKMTQMGVFLDSVSVSSVVDGYCKVG---KSEEAM 311

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + L      P+  V+NS I      G       +   M   G+      Y  ++  + + 
Sbjct: 312 DVLEVFNLSPNIFVFNSFISKLCTDGNMLKAAKVFQDMCEMGLIPDCFSYTTMMAGYCKV 371

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
            D+  A +    M     +P++ + TLL+++  + G+ + A   F  MI  G  PD    
Sbjct: 372 KDISNALKYLGKMLKRGIRPSVATYTLLIDSCCKPGNMEMAEYLFQRMITEGLVPDVVSY 431

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            +++  YGKK  L KA  LL  +   G  P   TY +L+  L +  L+NEA+ +L +++ 
Sbjct: 432 NTLMNGYGKKGHLQKAFELLSMMRSAGVSPDLVTYNILIHGLIKRGLVNEAKDILDELTR 491

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFL 553
            G +P      ++   ++  G  ++A   L F    +  + PD      ++NG      +
Sbjct: 492 RGFSPDVVTFTNIIGGFSNKGNFEEAF--LLFFYMSEHHLEPDVVTCSALLNGYCRTRCM 549

Query: 554 QDAQRVHGLMEAQGFAASERLKVALI 579
            +A  +   M   G  A   L  +LI
Sbjct: 550 AEANVLFHKMLDAGLKADVILYNSLI 575



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 99/219 (45%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ LID+  K   +E AE + ++M   G+VPD+V+   L++ Y K G+L +A E  
Sbjct: 392 SVATYTLLIDSCCKPGNMEMAEYLFQRMITEGLVPDVVSYNTLMNGYGKKGHLQKAFELL 451

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +RS G  PD   YN +I   +  G       ++D +   G       +  ++  F+  
Sbjct: 452 SMMRSAGVSPDLVTYNILIHGLIKRGLVNEAKDILDELTRRGFSPDVVTFTNIIGGFSNK 511

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G+   A  +   M     +P + +C+ L+  Y +     +A   F  M+  G K D    
Sbjct: 512 GNFEEAFLLFFYMSEHHLEPDVVTCSALLNGYCRTRCMAEANVLFHKMLDAGLKADVILY 571

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
            S+I  +     +D A +L+  + + G  P   T+  LV
Sbjct: 572 NSLIHGFCSLGNIDDACHLVSMMIEHGIMPNNITHHALV 610



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 110/241 (45%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ ++  + K   + +A + L KM + GI P + T T+L+    K GN++ A+  F+ + 
Sbjct: 361 YTTMMAGYCKVKDISNALKYLGKMLKRGIRPSVATYTLLIDSCCKPGNMEMAEYLFQRMI 420

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G  PD   YN+++  Y   G  +    L+ MM ++G+      Y  L+    + G V 
Sbjct: 421 TEGLVPDVVSYNTLMNGYGKKGHLQKAFELLSMMRSAGVSPDLVTYNILIHGLIKRGLVN 480

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  I + +    F P + + T ++  +   G+ ++A   F YM     +PD    ++++
Sbjct: 481 EAKDILDELTRRGFSPDVVTFTNIIGGFSNKGNFEEAFLLFFYMSEHHLEPDVVTCSALL 540

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             Y +   + +A  L  ++   G +     Y  L+     L  I++A  L+  + E G  
Sbjct: 541 NGYCRTRCMAEANVLFHKMLDAGLKADVILYNSLIHGFCSLGNIDDACHLVSMMIEHGIM 600

Query: 500 P 500
           P
Sbjct: 601 P 601



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/270 (21%), Positives = 114/270 (42%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           VL   +   N+  ++  I     +  +  A ++ + M E G++PD  + T ++  Y K  
Sbjct: 313 VLEVFNLSPNIFVFNSFISKLCTDGNMLKAAKVFQDMCEMGLIPDCFSYTTMMAGYCKVK 372

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           ++  A +    +   G +P    Y  +I +    G  ++   L   MIT G+      Y 
Sbjct: 373 DISNALKYLGKMLKRGIRPSVATYTLLIDSCCKPGNMEMAEYLFQRMITEGLVPDVVSYN 432

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+  + + G ++ A ++ ++MR     P L +  +L+    + G  ++A+   D + R 
Sbjct: 433 TLMNGYGKKGHLQKAFELLSMMRSAGVSPDLVTYNILIHGLIKRGLVNEAKDILDELTRR 492

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G  PD     ++I  +  K   ++A  L   + +   EP   T + L++   R + + EA
Sbjct: 493 GFSPDVVTFTNIIGGFSNKGNFEEAFLLFFYMSEHHLEPDVVTCSALLNGYCRTRCMAEA 552

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAG 516
             L  K+ + G      +  SL   +   G
Sbjct: 553 NVLFHKMLDAGLKADVILYNSLIHGFCSLG 582



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/299 (21%), Positives = 125/299 (41%), Gaps = 7/299 (2%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           L  A   LK+M   G+  +    ++ +  Y   GN+D   +    ++  G +PD   Y  
Sbjct: 202 LNLAWDFLKEMKSQGLGLNASIISLFISGYCSQGNIDTGWKLLMEMKYLGIKPDVVAYTI 261

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I +       K   S++  M   G+        +++  + + G    A    +++ +  
Sbjct: 262 VIDSLCKMSLLKEATSILFKMTQMGVFLDSVSVSSVVDGYCKVGKSEEA---MDVLEVFN 318

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P +      +      G+  +A   F  M  +G  PD     +M+A Y K   +  AL
Sbjct: 319 LSPNIFVFNSFISKLCTDGNMLKAAKVFQDMCEMGLIPDCFSYTTMMAGYCKVKDISNAL 378

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
             L ++ K G  P  ATYT+L+D   +   +  AE L  ++   G  P      +L + Y
Sbjct: 379 KYLGKMLKRGIRPSVATYTLLIDSCCKPGNMEMAEYLFQRMITEGLVPDVVSYNTLMNGY 438

Query: 513 ARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
            + G  +KA + L  +  +   + PD   +  +I+GL+  G + +A+ +   +  +GF+
Sbjct: 439 GKKGHLQKAFELLSMM--RSAGVSPDLVTYNILIHGLIKRGLVNEAKDILDELTRRGFS 495



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 60/125 (48%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L+   F  +V  ++ +I   + +   E+A  +   M+E+ + PD+VT + L++ Y +   
Sbjct: 489 LTRRGFSPDVVTFTNIIGGFSNKGNFEEAFLLFFYMSEHHLEPDVVTCSALLNGYCRTRC 548

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A   F  +   G + D  +YNS+I  + + G       LV MMI  GI  +   + A
Sbjct: 549 MAEANVLFHKMLDAGLKADVILYNSLIHGFCSLGNIDDACHLVSMMIEHGIMPNNITHHA 608

Query: 368 LLRSF 372
           L+  +
Sbjct: 609 LVLGY 613



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 86/198 (43%), Gaps = 3/198 (1%)

Query: 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421
           E +Y  L+  + +    + A ++   MR     P +  C  L++A  ++   + A     
Sbjct: 151 ETVYGMLVNCYVKENMTQVALKLICKMRHLNIFPLIGVCNSLLKALLESEQLNLAWDFLK 210

Query: 422 YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ 481
            M   G   +    +  I+ Y  +  +D    LL+E++  G +P    YT+++D L ++ 
Sbjct: 211 EMKSQGLGLNASIISLFISGYCSQGNIDTGWKLLMEMKYLGIKPDVVAYTIVIDSLCKMS 270

Query: 482 LINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFE 541
           L+ EA  +L K++++G         S+ D Y + G   K+ +A+  LE          F 
Sbjct: 271 LLKEATSILFKMTQMGVFLDSVSVSSVVDGYCKVG---KSEEAMDVLEVFNLSPNIFVFN 327

Query: 542 RIINGLLAGGFLQDAQRV 559
             I+ L   G +  A +V
Sbjct: 328 SFISKLCTDGNMLKAAKV 345


>gi|224135613|ref|XP_002322117.1| predicted protein [Populus trichocarpa]
 gi|222869113|gb|EEF06244.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 136/291 (46%), Gaps = 3/291 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L +  F  ++   +K++     +N +  A+     +   G  P++VT + L+  Y K GN
Sbjct: 263 LVQGGFGLDIITCNKILKGIWMQNDIGVADDYFNMVVRIGPKPNVVTFSTLIDAYCKEGN 322

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           LD+A   F+ +  +G  PD  VY+ +I     AG+ + G  L+ + +  GI+     + +
Sbjct: 323 LDKAFVLFDVMAGNGVTPDLIVYSILIDGLFKAGRLEDGQRLLLVALDKGIKLDVVGFSS 382

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
            + ++ + GD+    QI   M  E   P + SC++L++ + Q G   +A   F  +++LG
Sbjct: 383 AMDAYVKIGDLGRVIQIYKRMLNEGISPNVVSCSILIKGFCQNGRILEACGLFVQILKLG 442

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            +P     +++IA + K   L     L  ++ K   EP    Y+VL++ L +  L+ +A 
Sbjct: 443 FEPSILTYSALIAGFCKSGNLRDGFYLYEDMIKKRCEPDTIVYSVLINGLCKQGLVGDAL 502

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQA---LGFLEAKKEQM 535
           +   +    G +P      +L D + R      A++    +G L  K + +
Sbjct: 503 RFFFQAVNRGLSPNVFTLNTLLDSFCRLKCIVGAMKVYYLMGMLNIKADTV 553



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 106/239 (44%), Gaps = 36/239 (15%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           ++ F+ +V  Y  LID   K         I   M +N + PDI    VL++M+S+ G+L+
Sbjct: 580 KKDFKPDVITYCTLIDGLCKLKKSSAGLCIFDFMCKNAVAPDIAIYNVLINMHSREGHLE 639

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A   F  +   G +PD   +N+MI  Y N                   +R ++      
Sbjct: 640 AALGLFVHVVERGPKPDVFTFNTMICCYCN------------------FKRLDD------ 675

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
                      A Q+   M  E+ +P   + T+L++A+ + G  D A   F  M+  G +
Sbjct: 676 -----------AVQLFAKMTSEQLRPNAITFTILIDAFCREGRMDDAMLMFSKMLEEGPE 724

Query: 430 PDDRCTASMIAAYGK-KNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
           P+    + +I  Y K +++++  L L  E+ ++   P   +Y++L+D L +  L+ EA 
Sbjct: 725 PNLVTYSCLIHGYFKSQSMMESGLKLYNEMLENNIAPNIVSYSILIDGLCKRGLMKEAS 783



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 72/351 (20%), Positives = 136/351 (38%), Gaps = 50/351 (14%)

Query: 215 KELLQPSRIDWINLLDRLREQNT-----QLYFKVAELVLSEESFQTNVRDYSKLIDAHAK 269
           K+  +P  I +  L++ L +Q       + +F+     LS   F  N      L+D+  +
Sbjct: 475 KKRCEPDTIVYSVLINGLCKQGLVGDALRFFFQAVNRGLSPNVFTLN-----TLLDSFCR 529

Query: 270 ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKV 329
             C+  A ++   M    I  D VT T+L+   ++ G +D A   F  +    F+PD   
Sbjct: 530 LKCIVGAMKVYYLMGMLNIKADTVTYTILIKGAAQFGRVDEALMLFFQMLKKDFKPDVIT 589

Query: 330 YNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389
           Y ++I       +   G+ + D M  + +     IY                        
Sbjct: 590 YCTLIDGLCKLKKSSAGLCIFDFMCKNAVAPDIAIY------------------------ 625

Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD 449
                       +L+  + + G  + A   F +++  G KPD     +MI  Y     LD
Sbjct: 626 -----------NVLINMHSREGHLEAALGLFVHVVERGPKPDVFTFNTMICCYCNFKRLD 674

Query: 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLC 509
            A+ L  ++  +   P   T+T+L+D   R   +++A  +  K+ E G  P       L 
Sbjct: 675 DAVQLFAKMTSEQLRPNAITFTILIDAFCREGRMDDAMLMFSKMLEEGPEPNLVTYSCLI 734

Query: 510 DMYARA-GIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQ 557
             Y ++  + +  L+     E  +  + P+   +  +I+GL   G +++A 
Sbjct: 735 HGYFKSQSMMESGLKLYN--EMLENNIAPNIVSYSILIDGLCKRGLMKEAS 783



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 78/358 (21%), Positives = 143/358 (39%), Gaps = 39/358 (10%)

Query: 219 QPSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           +P+ + +  L+D   +E N    F + + V++      ++  YS LID   K   LED +
Sbjct: 304 KPNVVTFSTLIDAYCKEGNLDKAFVLFD-VMAGNGVTPDLIVYSILIDGLFKAGRLEDGQ 362

Query: 278 RIL-----------------------------------KKMNENGIVPDIVTSTVLVHMY 302
           R+L                                   K+M   GI P++V+ ++L+  +
Sbjct: 363 RLLLVALDKGIKLDVVGFSSAMDAYVKIGDLGRVIQIYKRMLNEGISPNVVSCSILIKGF 422

Query: 303 SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE 362
            + G +  A   F  +   GF+P    Y+++I  +  +G  + G  L + MI    E   
Sbjct: 423 CQNGRILEACGLFVQILKLGFEPSILTYSALIAGFCKSGNLRDGFYLYEDMIKKRCEPDT 482

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
            +Y  L+    + G V  A +           P + +   L++++ +      A   +  
Sbjct: 483 IVYSVLINGLCKQGLVGDALRFFFQAVNRGLSPNVFTLNTLLDSFCRLKCIVGAMKVYYL 542

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
           M  L  K D      +I    +   +D+AL L  ++ K  F+P   TY  L+D L +L+ 
Sbjct: 543 MGMLNIKADTVTYTILIKGAAQFGRVDEALMLFFQMLKKDFKPDVITYCTLIDGLCKLKK 602

Query: 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF 540
            +    +   + +   AP   I   L +M++R G  + AL    F+   +    PD F
Sbjct: 603 SSAGLCIFDFMCKNAVAPDIAIYNVLINMHSREGHLEAALGL--FVHVVERGPKPDVF 658



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 127/321 (39%), Gaps = 6/321 (1%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
            E    NV   S LI    +   + +A  +  ++ + G  P I+T + L+  + K+GNL 
Sbjct: 405 NEGISPNVVSCSILIKGFCQNGRILEACGLFVQILKLGFEPSILTYSALIAGFCKSGNLR 464

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
                +E +     +PD  VY+ +I      G     +      +  G+  +      LL
Sbjct: 465 DGFYLYEDMIKKRCEPDTIVYSVLINGLCKQGLVGDALRFFFQAVNRGLSPNVFTLNTLL 524

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
            SF +   + GA ++  +M +   +    + T+L++   Q G  D+A   F  M++   K
Sbjct: 525 DSFCRLKCIVGAMKVYYLMGMLNIKADTVTYTILIKGAAQFGRVDEALMLFFQMLKKDFK 584

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     ++I    K       L +   + K+   P  A Y VL++   R   +  A  L
Sbjct: 585 PDVITYCTLIDGLCKLKKSSAGLCIFDFMCKNAVAPDIAIYNVLINMHSREGHLEAALGL 644

Query: 490 LGKISELGEAP-PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIING 546
              + E G  P  F     +C  Y        A+Q   F +   EQ+ P+   F  +I+ 
Sbjct: 645 FVHVVERGPKPDVFTFNTMIC-CYCNFKRLDDAVQL--FAKMTSEQLRPNAITFTILIDA 701

Query: 547 LLAGGFLQDAQRVHGLMEAQG 567
               G + DA  +   M  +G
Sbjct: 702 FCREGRMDDAMLMFSKMLEEG 722



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 77/177 (43%), Gaps = 10/177 (5%)

Query: 184 PKPITGKCKLITDKILSLEKEEDPSPLLAEW-KELLQPSRIDWINLLDRL----REQNTQ 238
           PKP       +     + ++ +D   L A+   E L+P+ I +  L+D      R  +  
Sbjct: 653 PKPDVFTFNTMICCYCNFKRLDDAVQLFAKMTSEQLRPNAITFTILIDAFCREGRMDDAM 712

Query: 239 LYFKVAELVLSEESFQTNVRDYSKLIDAHAK-ENCLEDAERILKKMNENGIVPDIVTSTV 297
           L F      + EE  + N+  YS LI  + K ++ +E   ++  +M EN I P+IV+ ++
Sbjct: 713 LMFSK----MLEEGPEPNLVTYSCLIHGYFKSQSMMESGLKLYNEMLENNIAPNIVSYSI 768

Query: 298 LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMI 354
           L+    K G +  A  AF         PD   Y  +I  Y   G+    M L D M+
Sbjct: 769 LIDGLCKRGLMKEASCAFRCALDKHLLPDVIAYTILIRGYCKVGRLTEAMMLYDNML 825



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/177 (21%), Positives = 79/177 (44%), Gaps = 1/177 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  ++ +I  +     L+DA ++  KM    + P+ +T T+L+  + + G +D A   F
Sbjct: 656 DVFTFNTMICCYCNFKRLDDAVQLFAKMTSEQLRPNAITFTILIDAFCREGRMDDAMLMF 715

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNA-GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
             +   G +P+   Y+ +I  Y  +    + G+ L + M+ + I  +   Y  L+    +
Sbjct: 716 SKMLEEGPEPNLVTYSCLIHGYFKSQSMMESGLKLYNEMLENNIAPNIVSYSILIDGLCK 775

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
            G ++ A         +   P + + T+L+  Y + G   +A   +D M+     PD
Sbjct: 776 RGLMKEASCAFRCALDKHLLPDVIAYTILIRGYCKVGRLTEAMMLYDNMLLNRLTPD 832



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 12/134 (8%)

Query: 196 DKILSLEK--EEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESF 253
           D +L   K  EE P P L  +  L+             + E   +LY +     + E + 
Sbjct: 710 DAMLMFSKMLEEGPEPNLVTYSCLIHGYFKS-----QSMMESGLKLYNE-----MLENNI 759

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
             N+  YS LID   K   +++A    +   +  ++PD++  T+L+  Y K G L  A  
Sbjct: 760 APNIVSYSILIDGLCKRGLMKEASCAFRCALDKHLLPDVIAYTILIRGYCKVGRLTEAMM 819

Query: 314 AFESLRSHGFQPDK 327
            ++++  +   PD+
Sbjct: 820 LYDNMLLNRLTPDR 833


>gi|15983487|gb|AAL11611.1|AF424618_1 AT5g04810/MUK11_13 [Arabidopsis thaliana]
          Length = 950

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/371 (21%), Positives = 159/371 (42%), Gaps = 47/371 (12%)

Query: 238 QLYFKVAEL--------VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIV 289
            LY KV ++        V+ EE  + N++ YS +I+   K     +A  + + M + G+ 
Sbjct: 490 NLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMK 549

Query: 290 PDIV-----------------------------------TSTVLVHMYSKAGNLDRAKEA 314
           PD++                                   T   ++H Y+K+G++ R+ E 
Sbjct: 550 PDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEV 609

Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
           F+ +R  G  P    +N +I   V   Q +  + ++D M  +G+  +E  Y  +++ +A 
Sbjct: 610 FDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYAS 669

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
            GD   A +    ++ E     + +   L++A  ++G    A +    M       +   
Sbjct: 670 VGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFV 729

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
              +I  + ++  + +A +L+ +++K+G +P   TYT  +    +   +N A Q + ++ 
Sbjct: 730 YNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEME 789

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGF 552
            LG  P  K   +L   +ARA + +KAL    + E K   + PD   +  ++  LL+   
Sbjct: 790 ALGVKPNIKTYTTLIKGWARASLPEKALSC--YEEMKAMGIKPDKAVYHCLLTSLLSRAS 847

Query: 553 LQDAQRVHGLM 563
           + +A    G+M
Sbjct: 848 IAEAYIYSGVM 858



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 67/311 (21%), Positives = 132/311 (42%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N   Y K+I AH +   +E AE ++++M E GI   I     ++  Y+   +  +    F
Sbjct: 411 NASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVF 470

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + L+  GF P    Y  +I  Y   G+    + +  +M   G++ + + Y  ++  F + 
Sbjct: 471 KRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKL 530

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
            D   A  +   M  E  +P +     ++ A+   G+ D+A      M +L H+P  R  
Sbjct: 531 KDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTF 590

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +I  Y K   + ++L +   + + G  P   T+  L++ L   + + +A ++L +++ 
Sbjct: 591 MPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTL 650

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
            G +        +   YA  G   KA +    L+ +   +    +E ++      G +Q 
Sbjct: 651 AGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQS 710

Query: 556 AQRVHGLMEAQ 566
           A  V   M A+
Sbjct: 711 ALAVTKEMSAR 721



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/316 (21%), Positives = 138/316 (43%)

Query: 258 RDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFES 317
           R Y+ LI A+A    +++A   ++KM E GI   +VT +V+V  +SKAG+ + A   F+ 
Sbjct: 343 RIYTSLIHAYAVGRDMDEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDE 402

Query: 318 LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
            +      +  +Y  +I A+      +   +LV  M   GI+    IY  ++  +    D
Sbjct: 403 AKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVAD 462

Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
            +    +   ++   F PT+ +   L+  Y + G   +A      M   G K + +  + 
Sbjct: 463 EKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSM 522

Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           MI  + K      A  +  ++ K+G +P    Y  ++     +  ++ A Q + ++ +L 
Sbjct: 523 MINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLR 582

Query: 498 EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQ 557
             P  +  + +   YA++G  +++L+    +           F  +INGL+    ++ A 
Sbjct: 583 HRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAV 642

Query: 558 RVHGLMEAQGFAASER 573
            +   M   G +A+E 
Sbjct: 643 EILDEMTLAGVSANEH 658



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 9/159 (5%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +S  +   N   Y+ LID  A+   + +A  ++++M + G+ PDI T T  +   SKAG+
Sbjct: 718 MSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGD 777

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           ++RA +  E + + G +P+ K Y ++I  +  A  P+  +S  + M   GI+  + +Y  
Sbjct: 778 MNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGIKPDKAVYHC 837

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA 406
           LL S      +  A   + +M I         C  +VEA
Sbjct: 838 LLTSLLSRASIAEAYIYSGVMTI---------CKEMVEA 867



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 65/326 (19%), Positives = 124/326 (38%), Gaps = 35/326 (10%)

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           ++V  Y + G++ RA+E FE +R+ G  P  ++Y S+I AY         +S V  M   
Sbjct: 312 LMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMDEALSCVRKMKEE 371

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAG--------------------------QITNIMRI 390
           GIE S   Y  ++  F++ G    A                           Q  N+ R 
Sbjct: 372 GIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERA 431

Query: 391 EEFQPTLES---------CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441
           E     +E             +++ Y    D  +    F  +   G  P       +I  
Sbjct: 432 EALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINL 491

Query: 442 YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
           Y K   + KAL +   ++++G +    TY+++++   +L+    A  +   + + G  P 
Sbjct: 492 YTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPD 551

Query: 502 FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHG 561
             +  ++   +   G   +A+Q +  ++  + +     F  II+G    G ++ +  V  
Sbjct: 552 VILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFD 611

Query: 562 LMEAQGFAASERLKVALISSQTFNRQ 587
           +M   G   +      LI+     RQ
Sbjct: 612 MMRRCGCVPTVHTFNGLINGLVEKRQ 637



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 69/164 (42%), Gaps = 35/164 (21%)

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
           +P+     L+V+ YG+ GD  +AR  F+ M   G  P  R   S+I AY     +D+AL+
Sbjct: 304 KPSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMDEALS 363

Query: 454 LLLELEKDGFEPGPATYTVLVD-------------WLGRLQLINE--------------- 485
            + +++++G E    TY+V+V              W    + I++               
Sbjct: 364 CVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHC 423

Query: 486 -------AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522
                  AE L+ ++ E G   P  I  ++ D Y     EKK L
Sbjct: 424 QTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGL 467


>gi|9755842|emb|CAC01928.1| 67kD chloroplastic RNA-binding protein, P67 [Arabidopsis thaliana]
          Length = 702

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 118/267 (44%), Gaps = 1/267 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+  +    K   LE +E++  +M E GI PD  T T ++    + G   RA E FE + 
Sbjct: 178 YNVTMKVFRKSKDLEKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKMS 237

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           S G +PD     +MI AY  AG   + +SL D   T         +  L+R +   G+  
Sbjct: 238 SFGCEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYD 297

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
           G   I   M+    +P L     L+++ G+A  P QA+  +  +I  G  P+    A+++
Sbjct: 298 GCLNIYEEMKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALV 357

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            AYG+    D AL +  E+++ G       Y  L+     +  ++EA ++   +      
Sbjct: 358 RAYGRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADIGYVDEAFEIFQDMKNCETC 417

Query: 500 PPFKIQV-SLCDMYARAGIEKKALQAL 525
            P      SL  +YA +G   +A  AL
Sbjct: 418 DPDSWTFSSLITVYACSGRVSEAEAAL 444



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/302 (21%), Positives = 139/302 (46%), Gaps = 7/302 (2%)

Query: 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV 350
           +++   V + ++ K+ +L+++++ F+ +   G +PD   + ++I      G PK  +   
Sbjct: 174 EVILYNVTMKVFRKSKDLEKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVEWF 233

Query: 351 DMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410
           + M + G E       A++ ++ + G+V  A  + +  R E+++    + + L+  YG +
Sbjct: 234 EKMSSFGCEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVS 293

Query: 411 GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATY 470
           G+ D   + ++ M  LG KP+      +I + G+     +A  +  +L  +GF P  +TY
Sbjct: 294 GNYDGCLNIYEEMKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTY 353

Query: 471 TVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEA 530
             LV   GR +  ++A  +  ++ E G +    +  +L  M A  G   +A +   F + 
Sbjct: 354 AALVRAYGRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADIGYVDEAFEI--FQDM 411

Query: 531 KK-EQMGPDD--FERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQ 587
           K  E   PD   F  +I      G + +A+     M   GF  +  +  ++I  Q + + 
Sbjct: 412 KNCETCDPDSWTFSSLITVYACSGRVSEAEAALLQMREAGFEPTLFVLTSVI--QCYGKA 469

Query: 588 RQ 589
           +Q
Sbjct: 470 KQ 471



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 61/277 (22%), Positives = 123/277 (44%), Gaps = 2/277 (0%)

Query: 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320
           + +IDA+ +   ++ A  +  +        D VT + L+ +Y  +GN D     +E +++
Sbjct: 249 AAMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKA 308

Query: 321 HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRG 380
            G +P+  +YN +I +   A +P     +   +IT+G   +   Y AL+R++ +      
Sbjct: 309 LGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDD 368

Query: 381 AGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL-GHKPDDRCTASMI 439
           A  I   M+ +    T+     L+      G  D+A   F  M       PD    +S+I
Sbjct: 369 ALAIYREMKEKGLSLTVILYNTLLSMCADIGYVDEAFEIFQDMKNCETCDPDSWTFSSLI 428

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             Y     + +A   LL++ + GFEP     T ++   G+ + +++  +   ++ ELG  
Sbjct: 429 TVYACSGRVSEAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGIT 488

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG 536
           P  +    L ++  +   E+   + +G +E  K ++G
Sbjct: 489 PDDRFCGCLLNVMTQTPSEEIG-KLIGCVEKAKPKLG 524



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 92/223 (41%), Gaps = 36/223 (16%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           ++P+ + +  L+D +         K+    L    F  N   Y+ L+ A+ +    +DA 
Sbjct: 311 VKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDAL 370

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS-HGFQPDKKVYNSMIMA 336
            I ++M E G+   ++    L+ M +  G +D A E F+ +++     PD   ++S+I  
Sbjct: 371 AIYREMKEKGLSLTVILYNTLLSMCADIGYVDEAFEIFQDMKNCETCDPDSWTFSSLITV 430

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           Y  +G                  R  E   ALL+                 MR   F+PT
Sbjct: 431 YACSG------------------RVSEAEAALLQ-----------------MREAGFEPT 455

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
           L   T +++ YG+A   D     FD ++ LG  PDDR    ++
Sbjct: 456 LFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGCLL 498



 Score = 42.0 bits (97), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 1/128 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKM-NENGIVPDIVTSTVLVHMYSKAG 306
           + E+     V  Y+ L+   A    +++A  I + M N     PD  T + L+ +Y+ +G
Sbjct: 376 MKEKGLSLTVILYNTLLSMCADIGYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSG 435

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            +  A+ A   +R  GF+P   V  S+I  Y  A Q    +   D ++  GI   +    
Sbjct: 436 RVSEAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCG 495

Query: 367 ALLRSFAQ 374
            LL    Q
Sbjct: 496 CLLNVMTQ 503



 Score = 40.4 bits (93), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 15/128 (11%)

Query: 241 FKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
           F++ + + + E+   +   +S LI  +A    + +AE  L +M E G  P +   T ++ 
Sbjct: 405 FEIFQDMKNCETCDPDSWTFSSLITVYACSGRVSEAEAALLQMREAGFEPTLFVLTSVIQ 464

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM--------------IMAYVNAGQPKLG 346
            Y KA  +D     F+ +   G  PD +    +              ++  V   +PKLG
Sbjct: 465 CYGKAKQVDDVVRTFDQVLELGITPDDRFCGCLLNVMTQTPSEEIGKLIGCVEKAKPKLG 524

Query: 347 MSLVDMMI 354
             +V M++
Sbjct: 525 -QVVKMLV 531


>gi|410109935|gb|AFV61047.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           origanoides]
          Length = 431

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 120/259 (46%), Gaps = 2/259 (0%)

Query: 218 LQPSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L+PS +    L++  +R  +    F++  ++L+    Q +V  YS LI+   KE+ ++DA
Sbjct: 173 LRPSVVSXNTLMNGYIRLGDLDEGFRLKSVMLAS-GVQPDVYTYSVLINGLCKESKMDDA 231

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
                +M   G+VP+ VT T L+  + K G +D AKE ++ + S    PD   YN++I  
Sbjct: 232 NEXFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAKEIYKQMLSQSLLPDLITYNTLIYG 291

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
               G  K    L+D M   G++  +  Y  L+    + GD+  A +    M  E  +  
Sbjct: 292 LCKKGDLKQAHDLIDDMSMKGLKPDKITYTTLIBGCCKEGDLDSAFEHRKRMIQENIRLD 351

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
               T L+    Q G    A      M+ +  KPD      +I  + KK  + K   LL 
Sbjct: 352 DVVYTALISGLCQEGRSVDAEKMLREMLSVRLKPDTGTYTMIINEFCKKGDVWKGSKLLK 411

Query: 457 ELEKDGFEPGPATYTVLVD 475
           E+++DG  P   TY VL++
Sbjct: 412 EMQRDGHAPSVVTYNVLMN 430



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/313 (19%), Positives = 144/313 (46%), Gaps = 5/313 (1%)

Query: 191 CKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELV--- 247
           C+ + + ++ L+  +       E  E   P+ + + N+L     ++  +  +VA+ V   
Sbjct: 110 CRKVLEYLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDI--RVAQSVFDA 167

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +++   + +V   + L++ + +   L++  R+   M  +G+ PD+ T +VL++   K   
Sbjct: 168 ITKWGLRPSVVSXNTLMNGYIRLGDLDEGFRLKSVMLASGVQPDVYTYSVLINGLCKESK 227

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D A E F+ +   G  P+   + ++I  +   G+  L   +   M++  +      Y  
Sbjct: 228 MDDANEXFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAKEIYKQMLSQSLLPDLITYNT 287

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    + GD++ A  + + M ++  +P   + T L++   + GD D A  +   MI+  
Sbjct: 288 LIYGLCKKGDLKQAHDLIDDMSMKGLKPDKITYTTLIBGCCKEGDLDSAFEHRKRMIQEN 347

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            + DD    ++I+   ++     A  +L E+     +P   TYT++++   +   + +  
Sbjct: 348 IRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVRLKPDTGTYTMIINEFCKKGDVWKGS 407

Query: 488 QLLGKISELGEAP 500
           +LL ++   G AP
Sbjct: 408 KLLKEMQRDGHAP 420


>gi|15239874|ref|NP_196771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171712|sp|Q9FMQ1.1|PP376_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g12100, mitochondrial; Flags: Precursor
 gi|9759377|dbj|BAB10028.1| unnamed protein product [Arabidopsis thaliana]
 gi|28973713|gb|AAO64173.1| unknown protein [Arabidopsis thaliana]
 gi|29824237|gb|AAP04079.1| unknown protein [Arabidopsis thaliana]
 gi|110737169|dbj|BAF00534.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004380|gb|AED91763.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 816

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 87/374 (23%), Positives = 165/374 (44%), Gaps = 4/374 (1%)

Query: 218 LQPSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L PS I +  L+D   +  N +  FKV E  +  +  + ++  ++ L+    K   +EDA
Sbjct: 245 LLPSLITYNTLIDGYCKAGNPEKSFKVRER-MKADHIEPSLITFNTLLKGLFKAGMVEDA 303

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
           E +LK+M + G VPD  T ++L   YS     + A   +E+    G + +    + ++ A
Sbjct: 304 ENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNA 363

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
               G+ +    ++   +  G+  +E IY  ++  + + GD+ GA      M  +  +P 
Sbjct: 364 LCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPD 423

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
             +   L+  + + G+ + A    + M   G  P       +I  YG+K   DK  ++L 
Sbjct: 424 HLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILK 483

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
           E+E +G  P   +Y  L++ L +   + EA+ +   + + G +P  +I   L D     G
Sbjct: 484 EMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKG 543

Query: 517 IEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKV 576
             + A +    +  K  ++    +  +I+GL   G L +A+ +   +  +G         
Sbjct: 544 KIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYN 603

Query: 577 ALISSQTF--NRQR 588
           +LIS   F  N QR
Sbjct: 604 SLISGYGFAGNVQR 617



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 90/406 (22%), Positives = 151/406 (37%), Gaps = 37/406 (9%)

Query: 210 LLAEWKELLQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHA 268
             A   E + PS      LLD L + +  ++   V   +L E  F+ +   Y K I A  
Sbjct: 132 FFALRNEGIYPSSDSLTLLLDHLVKTKQFRVTINVFLNIL-ESDFRPSKFMYGKAIQAAV 190

Query: 269 KENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKK 328
           K + +     +  +M  + I P +    VL+    K   ++ A++ F+ + +    P   
Sbjct: 191 KLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLI 250

Query: 329 VYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIM 388
            YN++I  Y  AG P+    + + M    IE S   +  LL+   + G V  A  +   M
Sbjct: 251 TYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEM 310

Query: 389 RIEEFQP-----------------------------------TLESCTLLVEAYGQAGDP 413
           +   F P                                      +C++L+ A  + G  
Sbjct: 311 KDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKI 370

Query: 414 DQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVL 473
           ++A       +  G  P++    +MI  Y +K  L  A   +  +EK G +P    Y  L
Sbjct: 371 EKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCL 430

Query: 474 VDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE 533
           +     L  +  AE+ + K+   G +P  +    L   Y R     K    L  +E    
Sbjct: 431 IRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGT 490

Query: 534 QMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
                 +  +IN L  G  L +AQ V   ME +G +   R+   LI
Sbjct: 491 MPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLI 536



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 115/258 (44%), Gaps = 10/258 (3%)

Query: 220 PSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERI 279
           P+ + +  L++ L + +  L  ++ +  + +      VR Y+ LID    +  +EDA R 
Sbjct: 492 PNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRF 551

Query: 280 LKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339
            K+M + GI  ++VT   L+   S  G L  A++    +   G +PD   YNS+I  Y  
Sbjct: 552 SKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGF 611

Query: 340 AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG---DVRGAGQITNIMRIEEFQPT 396
           AG  +  ++L + M  SGI+ + + Y  L+    + G     R  G+++        +P 
Sbjct: 612 AGNVQRCIALYEEMKRSGIKPTLKTYHLLISLCTKEGIELTERLFGEMS-------LKPD 664

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           L     ++  Y   GD ++A +    MI      D     S+I    K   L +  +L+ 
Sbjct: 665 LLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLID 724

Query: 457 ELEKDGFEPGPATYTVLV 474
           E+     EP   TY ++V
Sbjct: 725 EMNAREMEPEADTYNIIV 742



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 80/175 (45%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ LI  + ++   +    ILK+M +NG +P++V+   L++   K   L  A+   
Sbjct: 458 SVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVK 517

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G  P  ++YN +I    + G+ +        M+  GIE +   Y  L+   +  
Sbjct: 518 RDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMT 577

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
           G +  A  +   +  +  +P + +   L+  YG AG+  +  + ++ M R G KP
Sbjct: 578 GKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKP 632



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 122/299 (40%), Gaps = 8/299 (2%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           + +A  +   +   GI P   + T+L+    K          F ++    F+P K +Y  
Sbjct: 125 ISEAADLFFALRNEGIYPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGK 184

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
            I A V       G+ L + M    I  S  IY  L+    +   +  A Q+ + M    
Sbjct: 185 AIQAAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARR 244

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P+L +   L++ Y +AG+P+++    + M     +P      +++    K  +++ A 
Sbjct: 245 LLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAE 304

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
           N+L E++  GF P   T+++L D     +   +AE  LG + E       K+    C + 
Sbjct: 305 NVLKEMKDLGFVPDAFTFSILFDGYSSNE---KAEAALG-VYETAVDSGVKMNAYTCSIL 360

Query: 513 ARA----GIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
             A    G  +KA + LG   AK        +  +I+G    G L  A+     ME QG
Sbjct: 361 LNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQG 419



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/275 (20%), Positives = 119/275 (43%), Gaps = 6/275 (2%)

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A + F +LR+ G  P       ++   V   Q ++ +++   ++ S    S+ +Y  
Sbjct: 125 ISEAADLFFALRNEGIYPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGK 184

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
            +++  +  DV    ++ N M+ +   P++    +L++   +    + A   FD M+   
Sbjct: 185 AIQAAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARR 244

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P      ++I  Y K    +K+  +   ++ D  EP   T+  L+  L +  ++ +AE
Sbjct: 245 LLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAE 304

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE---QMGPDDFERII 544
            +L ++ +LG  P       L D Y+     +KA  ALG  E   +   +M       ++
Sbjct: 305 NVLKEMKDLGFVPDAFTFSILFDGYSS---NEKAEAALGVYETAVDSGVKMNAYTCSILL 361

Query: 545 NGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
           N L   G ++ A+ + G   A+G   +E +   +I
Sbjct: 362 NALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMI 396


>gi|334184678|ref|NP_180987.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546770|sp|O64705.2|PP184_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g34400
 gi|330253874|gb|AEC08968.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 110/247 (44%), Gaps = 8/247 (3%)

Query: 287 GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLG 346
           G+  D+  +  L+ MY+K G +  A++ F+ +     + D   +NSMI  Y  AG  K  
Sbjct: 162 GLERDVHINHSLIMMYAKCGQVGYARKLFDEIT----ERDTVSWNSMISGYSEAGYAKDA 217

Query: 347 MSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA 406
           M L   M   G E  E   +++L + +  GD+R    +  +   ++   +    + L+  
Sbjct: 218 MDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLISM 277

Query: 407 YGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG 466
           YG+ GD D AR  F+ MI    K D     +MI  Y +     +A  L  E+EK G  P 
Sbjct: 278 YGKCGDLDSARRVFNQMI----KKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPD 333

Query: 467 PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALG 526
             T + ++   G +  +   +Q+    SEL       +   L DMY + G  ++AL+   
Sbjct: 334 AGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFE 393

Query: 527 FLEAKKE 533
            +  K E
Sbjct: 394 AMPVKNE 400



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/286 (21%), Positives = 136/286 (47%), Gaps = 29/286 (10%)

Query: 214 WKELLQPSRIDWINLLDRLREQN------TQLYFKVAELVLSEESFQTNVRDYSKLIDAH 267
           + ++++  R+ W  ++  +  QN       +L+F++ +  +S ++        S ++ A 
Sbjct: 291 FNQMIKKDRVAWTAMIT-VYSQNGKSSEAFKLFFEMEKTGVSPDA-----GTLSTVLSAC 344

Query: 268 AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK 327
                LE  ++I    +E  +  +I  +T LV MY K G ++ A   FE++       ++
Sbjct: 345 GSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPV----KNE 400

Query: 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV-RGAGQITN 386
             +N+MI AY + G  K  + L D M    +  S+  ++ +L +    G V +G      
Sbjct: 401 ATWNAMITAYAHQGHAKEALLLFDRM---SVPPSDITFIGVLSACVHAGLVHQGCRYFHE 457

Query: 387 IMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKN 446
           +  +    P +E  T +++   +AG  D+A   +++M R   KPD+   A+++ A  K+ 
Sbjct: 458 MSSMFGLVPKIEHYTNIIDLLSRAGMLDEA---WEFMERFPGKPDEIMLAAILGACHKRK 514

Query: 447 ---LLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
              + +KA+ +L+E+++         Y +  + L  +++ +E+ ++
Sbjct: 515 DVAIREKAMRMLMEMKE---AKNAGNYVISSNVLADMKMWDESAKM 557



 Score = 38.9 bits (89), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 71/167 (42%), Gaps = 26/167 (15%)

Query: 419 NFDYMIR-LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
           +F+YMIR L +  +D                + AL+L   ++  G +P   TY  +    
Sbjct: 98  SFNYMIRGLTNTWNDH---------------EAALSLYRRMKFSGLKPDKFTYNFVFIAC 142

Query: 478 GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP 537
            +L+ I     +   + ++G      I  SL  MYA+ G        +G+     +++  
Sbjct: 143 AKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCG-------QVGYARKLFDEITE 195

Query: 538 DD---FERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
            D   +  +I+G    G+ +DA  +   ME +GF   ER  V+++ +
Sbjct: 196 RDTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGA 242


>gi|42408236|dbj|BAD09393.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|125601932|gb|EAZ41257.1| hypothetical protein OsJ_25765 [Oryza sativa Japonica Group]
          Length = 798

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 163/358 (45%), Gaps = 22/358 (6%)

Query: 220 PSRIDWINLLDRLREQN--TQLYFKVAELVLSEES---FQTNVRDYSKLIDAHAKEN-CL 273
           P+   +  LL  L ++N   Q    +  +++++++   +  +V  Y+ +I+   +E   L
Sbjct: 160 PNVFSYTILLKGLCDENRSQQALHLLHTMMVADDTRGGYPPDVVSYNTVINGLLREGRQL 219

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           + A  +  +M + G+ PD+VT   ++   SKA  +D+A      +  +G  P++  +NS+
Sbjct: 220 DTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLVRMVKNGAMPNRITHNSL 279

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           +  Y ++G+P   + +   M   G+E     Y  L+    + G    A +I + M     
Sbjct: 280 LHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGH 339

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
           +P   +   L+  Y   G   +     D M+R G +PD      +I  Y K   +D A+ 
Sbjct: 340 KPNSATYGTLLHGYATEGSLVKMHHLLDMMVRNGIQPDHYIFNILIGTYTKHGKVDDAML 399

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP---FKIQV-SLC 509
           L  ++ + G  P   TY +++D L  +  +++A    G++   G  P    F+  +  LC
Sbjct: 400 LFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHGLC 459

Query: 510 --DMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQDAQRVHGLM 563
             D + +A  E+ A++ +G        + P++  F  ++N L   G +  A+ +  LM
Sbjct: 460 ARDKWDKA--EELAVEMIG------RGICPNNIFFNTLLNHLCKEGMVARAKNIFDLM 509



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/350 (20%), Positives = 148/350 (42%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           L P  + + +++  L +        V  + + +     N   ++ L+  +       DA 
Sbjct: 234 LSPDVVTYNSIISALSKARAMDKAAVVLVRMVKNGAMPNRITHNSLLHGYCSSGKPNDAI 293

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
            + K+M  +G+ PD+ T   L+    K G    A++ F+S+   G +P+   Y +++  Y
Sbjct: 294 GVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGY 353

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
              G       L+DMM+ +GI+    I+  L+ ++ + G V  A  + + MR +   P  
Sbjct: 354 ATEGSLVKMHHLLDMMVRNGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDT 413

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
            +  ++++A    G  D A + F  +I  G  PD     ++I     ++  DKA  L +E
Sbjct: 414 VTYGIVMDALCMVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVE 473

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI 517
           +   G  P    +  L++ L +  ++  A+ +   +  +          +L D Y   G 
Sbjct: 474 MIGRGICPNNIFFNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGK 533

Query: 518 EKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
             +A + L  +     +     +  +ING    G ++DA  +   M ++G
Sbjct: 534 VDEAAKLLEGMVLDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKG 583



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/253 (21%), Positives = 106/253 (41%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L  E    +   +  LI      +  + AE +  +M   GI P+ +    L++   K G 
Sbjct: 439 LISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGRGICPNNIFFNTLLNHLCKEGM 498

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           + RAK  F+ +     Q D   YN++I  Y   G+      L++ M+  G++ +E  Y  
Sbjct: 499 VARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDGVKPNEVTYNT 558

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++  + + G +  A  +   M  +   P + + + +++   QA     A+  + +MI+ G
Sbjct: 559 MINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLFQARRTAAAKELYLWMIKSG 618

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            K D      ++    + N  D AL +   L    F     T+ +++D L +    +EA+
Sbjct: 619 IKFDIGTYNIILLGLCQNNCTDDALRIFQNLYLIDFHLENRTFNIMIDALLKGGRHDEAK 678

Query: 488 QLLGKISELGEAP 500
            L   +   G  P
Sbjct: 679 DLFASLLARGLVP 691



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 123/276 (44%)

Query: 220 PSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERI 279
           P+ I +  LL+ L ++      K    ++     Q +V  Y+ LID +     +++A ++
Sbjct: 481 PNNIFFNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKL 540

Query: 280 LKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339
           L+ M  +G+ P+ VT   +++ Y K G ++ A   F  + S G  P    Y++++     
Sbjct: 541 LEGMVLDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLFQ 600

Query: 340 AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLES 399
           A +      L   MI SGI+     Y  +L    Q      A +I   + + +F     +
Sbjct: 601 ARRTAAAKELYLWMIKSGIKFDIGTYNIILLGLCQNNCTDDALRIFQNLYLIDFHLENRT 660

Query: 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELE 459
             ++++A  + G  D+A+  F  ++  G  P+      M+ +  ++ LL++  +L L LE
Sbjct: 661 FNIMIDALLKGGRHDEAKDLFASLLARGLVPNVVTYWLMMKSLIEQGLLEELDDLFLSLE 720

Query: 460 KDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
           K+G          LV  L +   + +A   L KI E
Sbjct: 721 KNGCTANSRMLNALVGKLLQKGEVRKAGVYLSKIDE 756



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/230 (19%), Positives = 87/230 (37%), Gaps = 35/230 (15%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  ++DA      ++DA     ++   G+ PD V    L+H        D+A+E    + 
Sbjct: 416 YGIVMDALCMVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMI 475

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P+   +N+++      G      ++ D+M+   ++R    Y              
Sbjct: 476 GRGICPNNIFFNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVITY-------------- 521

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
                                  L++ Y   G  D+A    + M+  G KP++    +MI
Sbjct: 522 ---------------------NTLIDGYCLHGKVDEAAKLLEGMVLDGVKPNEVTYNTMI 560

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
             Y K   ++ A +L  ++   G  PG  TY+ ++  L + +    A++L
Sbjct: 561 NGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLFQARRTAAAKEL 610



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 80/184 (43%), Gaps = 2/184 (1%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           + P  + +  +L  L +       K   L + +   + ++  Y+ ++    + NC +DA 
Sbjct: 584 VNPGIVTYSTILQGLFQARRTAAAKELYLWMIKSGIKFDIGTYNIILLGLCQNNCTDDAL 643

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
           RI + +       +  T  +++    K G  D AK+ F SL + G  P+   Y  M+ + 
Sbjct: 644 RIFQNLYLIDFHLENRTFNIMIDALLKGGRHDEAKDLFASLLARGLVPNVVTYWLMMKSL 703

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
           +  G  +    L   +  +G   +  +  AL+    Q G+VR AG    + +I+E   +L
Sbjct: 704 IEQGLLEELDDLFLSLEKNGCTANSRMLNALVGKLLQKGEVRKAG--VYLSKIDENNFSL 761

Query: 398 ESCT 401
           E+ T
Sbjct: 762 EAST 765


>gi|42567647|ref|NP_568141.2| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
 gi|122223689|sp|Q0WMY5.1|PP365_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g04810, chloroplastic; AltName: Full=Maize PPR4
           homolog; Short=AtPPR4; Flags: Precursor
 gi|110739199|dbj|BAF01515.1| membrane-associated salt-inducible protein-like [Arabidopsis
           thaliana]
 gi|332003406|gb|AED90789.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 952

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/371 (21%), Positives = 159/371 (42%), Gaps = 47/371 (12%)

Query: 238 QLYFKVAEL--------VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIV 289
            LY KV ++        V+ EE  + N++ YS +I+   K     +A  + + M + G+ 
Sbjct: 492 NLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMK 551

Query: 290 PDIV-----------------------------------TSTVLVHMYSKAGNLDRAKEA 314
           PD++                                   T   ++H Y+K+G++ R+ E 
Sbjct: 552 PDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEV 611

Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
           F+ +R  G  P    +N +I   V   Q +  + ++D M  +G+  +E  Y  +++ +A 
Sbjct: 612 FDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYAS 671

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
            GD   A +    ++ E     + +   L++A  ++G    A +    M       +   
Sbjct: 672 VGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFV 731

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
              +I  + ++  + +A +L+ +++K+G +P   TYT  +    +   +N A Q + ++ 
Sbjct: 732 YNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEME 791

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGF 552
            LG  P  K   +L   +ARA + +KAL    + E K   + PD   +  ++  LL+   
Sbjct: 792 ALGVKPNIKTYTTLIKGWARASLPEKALSC--YEEMKAMGIKPDKAVYHCLLTSLLSRAS 849

Query: 553 LQDAQRVHGLM 563
           + +A    G+M
Sbjct: 850 IAEAYIYSGVM 860



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 67/311 (21%), Positives = 132/311 (42%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N   Y K+I AH +   +E AE ++++M E GI   I     ++  Y+   +  +    F
Sbjct: 413 NASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVF 472

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + L+  GF P    Y  +I  Y   G+    + +  +M   G++ + + Y  ++  F + 
Sbjct: 473 KRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKL 532

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
            D   A  +   M  E  +P +     ++ A+   G+ D+A      M +L H+P  R  
Sbjct: 533 KDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTF 592

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +I  Y K   + ++L +   + + G  P   T+  L++ L   + + +A ++L +++ 
Sbjct: 593 MPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTL 652

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
            G +        +   YA  G   KA +    L+ +   +    +E ++      G +Q 
Sbjct: 653 AGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQS 712

Query: 556 AQRVHGLMEAQ 566
           A  V   M A+
Sbjct: 713 ALAVTKEMSAR 723



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/372 (20%), Positives = 163/372 (43%), Gaps = 16/372 (4%)

Query: 210 LLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQ--------TNVRDYS 261
           +++ ++++ +PSR ++  ++        + Y +  ++  + E+F+           R Y+
Sbjct: 297 VISAFEKISKPSRTEFGLMV--------KFYGRRGDMHRARETFERMRARGITPTSRIYT 348

Query: 262 KLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSH 321
            LI A+A    +++A   ++KM E GI   +VT +V+V  +SKAG+ + A   F+  +  
Sbjct: 349 SLIHAYAVGRDMDEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRI 408

Query: 322 GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGA 381
               +  +Y  +I A+      +   +LV  M   GI+    IY  ++  +    D +  
Sbjct: 409 HKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKG 468

Query: 382 GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441
             +   ++   F PT+ +   L+  Y + G   +A      M   G K + +  + MI  
Sbjct: 469 LVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMING 528

Query: 442 YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
           + K      A  +  ++ K+G +P    Y  ++     +  ++ A Q + ++ +L   P 
Sbjct: 529 FVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPT 588

Query: 502 FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHG 561
            +  + +   YA++G  +++L+    +           F  +INGL+    ++ A  +  
Sbjct: 589 TRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILD 648

Query: 562 LMEAQGFAASER 573
            M   G +A+E 
Sbjct: 649 EMTLAGVSANEH 660



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 9/159 (5%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +S  +   N   Y+ LID  A+   + +A  ++++M + G+ PDI T T  +   SKAG+
Sbjct: 720 MSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGD 779

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           ++RA +  E + + G +P+ K Y ++I  +  A  P+  +S  + M   GI+  + +Y  
Sbjct: 780 MNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGIKPDKAVYHC 839

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA 406
           LL S      +  A   + +M I         C  +VEA
Sbjct: 840 LLTSLLSRASIAEAYIYSGVMTI---------CKEMVEA 869



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 65/326 (19%), Positives = 124/326 (38%), Gaps = 35/326 (10%)

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           ++V  Y + G++ RA+E FE +R+ G  P  ++Y S+I AY         +S V  M   
Sbjct: 314 LMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMDEALSCVRKMKEE 373

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAG--------------------------QITNIMRI 390
           GIE S   Y  ++  F++ G    A                           Q  N+ R 
Sbjct: 374 GIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERA 433

Query: 391 EEFQPTLES---------CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441
           E     +E             +++ Y    D  +    F  +   G  P       +I  
Sbjct: 434 EALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINL 493

Query: 442 YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
           Y K   + KAL +   ++++G +    TY+++++   +L+    A  +   + + G  P 
Sbjct: 494 YTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPD 553

Query: 502 FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHG 561
             +  ++   +   G   +A+Q +  ++  + +     F  II+G    G ++ +  V  
Sbjct: 554 VILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFD 613

Query: 562 LMEAQGFAASERLKVALISSQTFNRQ 587
           +M   G   +      LI+     RQ
Sbjct: 614 MMRRCGCVPTVHTFNGLINGLVEKRQ 639


>gi|15221893|ref|NP_173324.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|42571539|ref|NP_973860.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75151479|sp|Q8GYP6.1|PPR49_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18900
 gi|26450017|dbj|BAC42129.1| unknown protein [Arabidopsis thaliana]
 gi|28827402|gb|AAO50545.1| unknown protein [Arabidopsis thaliana]
 gi|332191657|gb|AEE29778.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332191658|gb|AEE29779.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 860

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 119/259 (45%), Gaps = 3/259 (1%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           Q N   Y++LI ++ + N L +A  +  +M E G  PD VT   L+ +++KAG LD A +
Sbjct: 396 QPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMD 455

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            ++ +++ G  PD   Y+ +I     AG       L   M+  G   +   Y  ++   A
Sbjct: 456 MYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHA 515

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           +  + + A ++   M+   F+P   + ++++E  G  G  ++A + F  M +    PD+ 
Sbjct: 516 KARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEP 575

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
               ++  +GK   ++KA      +   G  P   T   L+    R+  I EA +LL  +
Sbjct: 576 VYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNM 635

Query: 494 SELGEAPP---FKIQVSLC 509
             LG  P    + + +S C
Sbjct: 636 LALGLRPSLQTYTLLLSCC 654



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/274 (21%), Positives = 111/274 (40%), Gaps = 35/274 (12%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           +  F+ +   Y+ ++    +        ++L +M  +G  P+ VT   L+H Y +A  L+
Sbjct: 357 QPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLN 416

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A   F  ++  G +PD+  Y ++I  +  AG   + M +   M   G+           
Sbjct: 417 EAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLS---------- 466

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
                                    P   + ++++   G+AG    A   F  M+  G  
Sbjct: 467 -------------------------PDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCT 501

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           P+      M+  + K      AL L  +++  GFEP   TY+++++ LG    + EAE +
Sbjct: 502 PNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAV 561

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
             ++ +    P   +   L D++ +AG  +KA Q
Sbjct: 562 FTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQ 595



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 89/212 (41%), Gaps = 15/212 (7%)

Query: 369 LRSFAQCGDVRGAGQITNIMRIEEFQPT----LESCTLLVEAY------GQAGDPDQARS 418
           L S   C        +++++R   + P     L++  L ++AY       Q  D   A  
Sbjct: 290 LTSRQYCNSGHIVENVSSVLRRFRWGPAAEEALQNLGLRIDAYQANQVLKQMNDYGNALG 349

Query: 419 NFDYMIRL-GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
            F ++ R  G K D     +M+   G+         LL E+ +DG +P   TY  L+   
Sbjct: 350 FFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSY 409

Query: 478 GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP 537
           GR   +NEA  +  ++ E G  P      +L D++A+AG    A+     ++A    + P
Sbjct: 410 GRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGG--LSP 467

Query: 538 DDFER--IINGLLAGGFLQDAQRVHGLMEAQG 567
           D F    IIN L   G L  A ++   M  QG
Sbjct: 468 DTFTYSVIINCLGKAGHLPAAHKLFCEMVDQG 499



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 74/182 (40%)

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
           R  GF+ D   Y +M+     A Q      L+D M+  G + +   Y  L+ S+ +   +
Sbjct: 356 RQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYL 415

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             A  + N M+    +P   +   L++ + +AG  D A   +  M   G  PD    + +
Sbjct: 416 NEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVI 475

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           I   GK   L  A  L  E+   G  P   TY +++D   + +    A +L   +   G 
Sbjct: 476 INCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGF 535

Query: 499 AP 500
            P
Sbjct: 536 EP 537



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 65/132 (49%), Gaps = 3/132 (2%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +    F+ +   YS +++       LE+AE +  +M +   +PD     +LV ++ KAGN
Sbjct: 530 MQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGN 589

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +++A + ++++   G +P+    NS++  ++   +      L+  M+  G+  S + Y  
Sbjct: 590 VEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTL 649

Query: 368 LLRSFAQCGDVR 379
           LL   + C D R
Sbjct: 650 LL---SCCTDGR 658


>gi|242086791|ref|XP_002439228.1| hypothetical protein SORBIDRAFT_09g002630 [Sorghum bicolor]
 gi|241944513|gb|EES17658.1| hypothetical protein SORBIDRAFT_09g002630 [Sorghum bicolor]
          Length = 653

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 130/288 (45%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +I A  +E  +++   ++  M   G+ P+++T T +V+ + KAG L  A      + 
Sbjct: 237 YNAVILALCREFRMQEVFAVVGDMVGRGLQPNVITYTTIVNAFCKAGELRMACAILARMV 296

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P+   + +++    N G+    + +   M+  G   S   Y  L+R     GD++
Sbjct: 297 ITGCTPNVATFTALVGGLFNDGRVHDALDMWKCMVAEGWAPSTVSYNVLIRGLCSVGDLK 356

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
           GA  + N M      P   + + L++ + +AGD D A S ++ M R G KP+     +M+
Sbjct: 357 GASSVLNDMEQHGCFPNARTYSTLIDGFSKAGDLDGAISIWNDMTRSGCKPNVVVYTNMV 416

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             + KK + ++A +L+ ++  +   P   T+  L+  L   + +  A  +  ++   G  
Sbjct: 417 GVFCKKLMFNQAESLIDKMLVENCPPNTVTFNTLIRSLCNCRRVGRALGVFHEMRRHGCP 476

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
           P  +    L     R G    ALQ +  ++    ++    +  +++GL
Sbjct: 477 PNGRTYNELLHGLFREGNCGDALQMVIEMQNHGIELSLVTYNTVVSGL 524



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 87/375 (23%), Positives = 159/375 (42%), Gaps = 12/375 (3%)

Query: 194 ITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESF 253
           I   + +L + ++ + +L+    +        + L    R Q  +++  V ++V      
Sbjct: 210 IVSALCTLGRVDEATEVLSAAPPVAASYNAVILALCREFRMQ--EVFAVVGDMV--GRGL 265

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           Q NV  Y+ +++A  K   L  A  IL +M   G  P++ T T LV      G +  A +
Sbjct: 266 QPNVITYTTIVNAFCKAGELRMACAILARMVITGCTPNVATFTALVGGLFNDGRVHDALD 325

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            ++ + + G+ P    YN +I    + G  K   S+++ M   G   +   Y  L+  F+
Sbjct: 326 MWKCMVAEGWAPSTVSYNVLIRGLCSVGDLKGASSVLNDMEQHGCFPNARTYSTLIDGFS 385

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           + GD+ GA  I N M     +P +   T +V  + +    +QA S  D M+     P+  
Sbjct: 386 KAGDLDGAISIWNDMTRSGCKPNVVVYTNMVGVFCKKLMFNQAESLIDKMLVENCPPNTV 445

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
              ++I +      + +AL +  E+ + G  P   TY  L+  L R     +A Q++ ++
Sbjct: 446 TFNTLIRSLCNCRRVGRALGVFHEMRRHGCPPNGRTYNELLHGLFREGNCGDALQMVIEM 505

Query: 494 SELG---EAPPFKIQVS-LCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLA 549
              G       +   VS LC M  R G  ++A+  +G +  +  Q     F  II+    
Sbjct: 506 QNHGIELSLVTYNTVVSGLCQM--RMG--REAMFFVGRMIVRGIQPDAFTFTAIIHAYCK 561

Query: 550 GGFLQDAQRVHGLME 564
            G ++ A  + G M 
Sbjct: 562 EGEVRMAAWILGAMN 576



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 80/387 (20%), Positives = 153/387 (39%), Gaps = 81/387 (20%)

Query: 255 TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA 314
           T  R Y+ LIDA  +EN +     +   M ++G+ P++ T  +LV    +   +  A++ 
Sbjct: 132 TAPRLYNHLIDALLRENMVGAVALVCGNMRKDGVQPNVFTYNLLVRALCQNHRVGAARKM 191

Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQ-----------PKLGMS--------------- 348
            + + + G  PD   Y +++ A    G+           P +  S               
Sbjct: 192 LDEMATKGCPPDDVTYGTIVSALCTLGRVDEATEVLSAAPPVAASYNAVILALCREFRMQ 251

Query: 349 ----LVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRI-------------- 390
               +V  M+  G++ +   Y  ++ +F + G++R A  I   M I              
Sbjct: 252 EVFAVVGDMVGRGLQPNVITYTTIVNAFCKAGELRMACAILARMVITGCTPNVATFTALV 311

Query: 391 ---------------------EEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
                                E + P+  S  +L+      GD   A S  + M + G  
Sbjct: 312 GGLFNDGRVHDALDMWKCMVAEGWAPSTVSYNVLIRGLCSVGDLKGASSVLNDMEQHGCF 371

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           P+ R  +++I  + K   LD A+++  ++ + G +P    YT +V    +  + N+AE L
Sbjct: 372 PNARTYSTLIDGFSKAGDLDGAISIWNDMTRSGCKPNVVVYTNMVGVFCKKLMFNQAESL 431

Query: 490 LGKISELGEAPPFKIQV-----SLCDMYARAGIEKKALQALG-FLEAKKEQMGPD--DFE 541
           + K+  +   PP  +       SLC+        ++  +ALG F E ++    P+   + 
Sbjct: 432 IDKM-LVENCPPNTVTFNTLIRSLCNC-------RRVGRALGVFHEMRRHGCPPNGRTYN 483

Query: 542 RIINGLLAGGFLQDAQRVHGLMEAQGF 568
            +++GL   G   DA ++   M+  G 
Sbjct: 484 ELLHGLFREGNCGDALQMVIEMQNHGI 510



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 57/301 (18%), Positives = 116/301 (38%), Gaps = 45/301 (14%)

Query: 201 LEKEEDPSPLLAEWKEL----LQPSRIDWINLLDRLREQNTQLYFKVAELVLSE---ESF 253
             K  D    ++ W ++     +P+ + + N++    ++   L F  AE ++ +   E+ 
Sbjct: 384 FSKAGDLDGAISIWNDMTRSGCKPNVVVYTNMVGVFCKK---LMFNQAESLIDKMLVENC 440

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
             N   ++ LI +      +  A  +  +M  +G  P+  T   L+H   + GN   A +
Sbjct: 441 PPNTVTFNTLIRSLCNCRRVGRALGVFHEMRRHGCPPNGRTYNELLHGLFREGNCGDALQ 500

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
               +++HG +     YN+++         +  M  V  MI  GI+     + A++ ++ 
Sbjct: 501 MVIEMQNHGIELSLVTYNTVVSGLCQMRMGREAMFFVGRMIVRGIQPDAFTFTAIIHAYC 560

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           + G+VR A  I   M +                       +  R+   Y I         
Sbjct: 561 KEGEVRMAAWILGAMNVV----------------------NCGRNILVYTI--------- 589

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
               ++A    ++ L+ A+  LL++  +G  P   T+ VLV  + R    N     +  I
Sbjct: 590 ----LMAELCNQDKLEDAMVYLLKMLYEGIYPNTVTWNVLVRGVFRNLGCNNPSDFIQHI 645

Query: 494 S 494
           +
Sbjct: 646 A 646



 Score = 42.0 bits (97), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 4/138 (2%)

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR- 425
           A +R  A  GDV G       MR+     T  +    V A+ +AG PD+A   F   +  
Sbjct: 66  AAVRRLAAAGDVDGVQLELQEMRLRGVPCTEGALVAAVGAFARAGAPDRALKTFYRAVHD 125

Query: 426 LG-HKPD-DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483
           LG  +P   R    +I A  ++N++     +   + KDG +P   TY +LV  L +   +
Sbjct: 126 LGCARPTAPRLYNHLIDALLRENMVGAVALVCGNMRKDGVQPNVFTYNLLVRALCQNHRV 185

Query: 484 NEAEQLLGKISELGEAPP 501
             A ++L +++  G  PP
Sbjct: 186 GAARKMLDEMATKG-CPP 202


>gi|449450197|ref|XP_004142850.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g40400-like [Cucumis sativus]
          Length = 632

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 130/313 (41%), Gaps = 35/313 (11%)

Query: 245 ELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIV----------- 293
            LVL  E    N   +  LI A+ K + + ++    KKM + G VP+++           
Sbjct: 174 NLVLCTEHCNWNPVIFEMLIKAYVKLDLIHESYWSFKKMVKLGFVPNVIACNCILNGLAK 233

Query: 294 ------------------------TSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKV 329
                                   T  +L ++  + G++++     E +   GF PD   
Sbjct: 234 MKSDAQCWELYEEMGRIGVHSNAYTFNILTYVLCRDGDVNKINGFLEKMEEEGFDPDVVT 293

Query: 330 YNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389
           YN++I +YV  G+ +    L  +M   G+      Y +L+R   + G VR A Q+ + M 
Sbjct: 294 YNTLIDSYVRRGRLEDAFYLYKIMYRRGVMPDLVSYTSLMRGLCRLGRVREAHQLFHRMI 353

Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD 449
                P +     L+ AY + G   +ARS    MI +G  PD      ++  YG++  L 
Sbjct: 354 DRGMDPDVVLYNTLIGAYCKDGMLQEARSLLHEMIGIGIHPDSFTCRILVEGYGREGRLI 413

Query: 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLC 509
            ALNL++E++K G       Y  L+  L R      A+ LL +I E    P   I   L 
Sbjct: 414 SALNLVVEIQKLGVTVAHDIYKYLIISLCREDRPFAAKSLLERILEDSFQPDSDIYNKLI 473

Query: 510 DMYARAGIEKKAL 522
           + + R+    +AL
Sbjct: 474 ESFCRSNNVSEAL 486



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 130/276 (47%), Gaps = 4/276 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + EE F  +V  Y+ LID++ +   LEDA  + K M   G++PD+V+ T L+    + G 
Sbjct: 282 MEEEGFDPDVVTYNTLIDSYVRRGRLEDAFYLYKIMYRRGVMPDLVSYTSLMRGLCRLGR 341

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A + F  +   G  PD  +YN++I AY   G  +   SL+  MI  GI         
Sbjct: 342 VREAHQLFHRMIDRGMDPDVVLYNTLIGAYCKDGMLQEARSLLHEMIGIGIHPDSFTCRI 401

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTL--ESCTLLVEAYGQAGDPDQARSNFDYMIR 425
           L+  + + G +  A  +  ++ I++   T+  +    L+ +  +   P  A+S  + ++ 
Sbjct: 402 LVEGYGREGRLISALNL--VVEIQKLGVTVAHDIYKYLIISLCREDRPFAAKSLLERILE 459

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
              +PD      +I ++ + N + +AL L LE+    ++P   TY  L+  +  +    +
Sbjct: 460 DSFQPDSDIYNKLIESFCRSNNVSEALLLKLEMINRNYKPTTDTYKSLIHCMCEINRSVD 519

Query: 486 AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKA 521
            E L+ ++ E    P  +I  +L + Y + G   KA
Sbjct: 520 GEGLMVEMVESEVIPDHEICRALVNGYCKEGNADKA 555



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 102/233 (43%), Gaps = 6/233 (2%)

Query: 229 LDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGI 288
           L R+RE + QL+ ++ +          +V  Y+ LI A+ K+  L++A  +L +M   GI
Sbjct: 339 LGRVREAH-QLFHRMID-----RGMDPDVVLYNTLIGAYCKDGMLQEARSLLHEMIGIGI 392

Query: 289 VPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMS 348
            PD  T  +LV  Y + G L  A      ++  G      +Y  +I++     +P    S
Sbjct: 393 HPDSFTCRILVEGYGREGRLISALNLVVEIQKLGVTVAHDIYKYLIISLCREDRPFAAKS 452

Query: 349 LVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYG 408
           L++ ++    +   +IY  L+ SF +  +V  A  +   M    ++PT ++   L+    
Sbjct: 453 LLERILEDSFQPDSDIYNKLIESFCRSNNVSEALLLKLEMINRNYKPTTDTYKSLIHCMC 512

Query: 409 QAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD 461
           +             M+     PD     +++  Y K+   DKA +LL+   KD
Sbjct: 513 EINRSVDGEGLMVEMVESEVIPDHEICRALVNGYCKEGNADKAESLLVSFAKD 565



 Score = 45.8 bits (107), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 72/165 (43%), Gaps = 4/165 (2%)

Query: 198 ILSLEKEEDPSPLLAEWKELL----QPSRIDWINLLDRLREQNTQLYFKVAELVLSEESF 253
           I+SL +E+ P    +  + +L    QP    +  L++     N      + +L +   ++
Sbjct: 438 IISLCREDRPFAAKSLLERILEDSFQPDSDIYNKLIESFCRSNNVSEALLLKLEMINRNY 497

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           +     Y  LI    + N   D E ++ +M E+ ++PD      LV+ Y K GN D+A+ 
Sbjct: 498 KPTTDTYKSLIHCMCEINRSVDGEGLMVEMVESEVIPDHEICRALVNGYCKEGNADKAES 557

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
              S        D + +NS++  Y + G     M L D M+ +G 
Sbjct: 558 LLVSFAKDFQFFDSESFNSLVKVYRDVGNETKLMELQDRMLKAGF 602


>gi|449483905|ref|XP_004156728.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g40400-like [Cucumis sativus]
          Length = 636

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 130/313 (41%), Gaps = 35/313 (11%)

Query: 245 ELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIV----------- 293
            LVL  E    N   +  LI A+ K + + ++    KKM + G VP+++           
Sbjct: 178 NLVLCTEHCNWNPVIFEMLIKAYVKLDLIHESYWSFKKMVKLGFVPNVIACNCILNGLAK 237

Query: 294 ------------------------TSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKV 329
                                   T  +L ++  + G++++     E +   GF PD   
Sbjct: 238 MKSDAQCWELYEEMGRIGVHSNAYTFNILTYVLCRDGDVNKINGFLEKMEEEGFDPDVVT 297

Query: 330 YNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389
           YN++I +YV  G+ +    L  +M   G+      Y +L+R   + G VR A Q+ + M 
Sbjct: 298 YNTLIDSYVRRGRLEDAFYLYKIMYRRGVMPDLVSYTSLMRGLCRLGRVREAHQLFHRMI 357

Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD 449
                P +     L+ AY + G   +ARS    MI +G  PD      ++  YG++  L 
Sbjct: 358 DRGMDPDVVLYNTLIGAYCKDGMLQEARSLLHEMIGIGIHPDSFTCRILVEGYGREGRLI 417

Query: 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLC 509
            ALNL++E++K G       Y  L+  L R      A+ LL +I E    P   I   L 
Sbjct: 418 SALNLVVEIQKLGVTVAHDIYKYLIISLCREDRPFAAKSLLERILEDSFQPDSDIYNKLI 477

Query: 510 DMYARAGIEKKAL 522
           + + R+    +AL
Sbjct: 478 ESFCRSNNVSEAL 490



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 130/276 (47%), Gaps = 4/276 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + EE F  +V  Y+ LID++ +   LEDA  + K M   G++PD+V+ T L+    + G 
Sbjct: 286 MEEEGFDPDVVTYNTLIDSYVRRGRLEDAFYLYKIMYRRGVMPDLVSYTSLMRGLCRLGR 345

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A + F  +   G  PD  +YN++I AY   G  +   SL+  MI  GI         
Sbjct: 346 VREAHQLFHRMIDRGMDPDVVLYNTLIGAYCKDGMLQEARSLLHEMIGIGIHPDSFTCRI 405

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTL--ESCTLLVEAYGQAGDPDQARSNFDYMIR 425
           L+  + + G +  A  +  ++ I++   T+  +    L+ +  +   P  A+S  + ++ 
Sbjct: 406 LVEGYGREGRLISALNL--VVEIQKLGVTVAHDIYKYLIISLCREDRPFAAKSLLERILE 463

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
              +PD      +I ++ + N + +AL L LE+    ++P   TY  L+  +  +    +
Sbjct: 464 DSFQPDSDIYNKLIESFCRSNNVSEALLLKLEMINRNYKPTTDTYKSLIHCMCEINRSVD 523

Query: 486 AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKA 521
            E L+ ++ E    P  +I  +L + Y + G   KA
Sbjct: 524 GEGLMVEMVESEVIPDHEICRALVNGYCKEGNADKA 559



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 102/233 (43%), Gaps = 6/233 (2%)

Query: 229 LDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGI 288
           L R+RE + QL+ ++ +          +V  Y+ LI A+ K+  L++A  +L +M   GI
Sbjct: 343 LGRVREAH-QLFHRMID-----RGMDPDVVLYNTLIGAYCKDGMLQEARSLLHEMIGIGI 396

Query: 289 VPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMS 348
            PD  T  +LV  Y + G L  A      ++  G      +Y  +I++     +P    S
Sbjct: 397 HPDSFTCRILVEGYGREGRLISALNLVVEIQKLGVTVAHDIYKYLIISLCREDRPFAAKS 456

Query: 349 LVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYG 408
           L++ ++    +   +IY  L+ SF +  +V  A  +   M    ++PT ++   L+    
Sbjct: 457 LLERILEDSFQPDSDIYNKLIESFCRSNNVSEALLLKLEMINRNYKPTTDTYKSLIHCMC 516

Query: 409 QAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD 461
           +             M+     PD     +++  Y K+   DKA +LL+   +D
Sbjct: 517 EINRSVDGEGLMVEMVESEVIPDHEICRALVNGYCKEGNADKAESLLVSFAQD 569



 Score = 46.6 bits (109), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 6/166 (3%)

Query: 198 ILSLEKEEDP----SPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESF 253
           I+SL +E+ P    S L    ++  QP    +  L++     N      + +L +   ++
Sbjct: 442 IISLCREDRPFAAKSLLERILEDSFQPDSDIYNKLIESFCRSNNVSEALLLKLEMINRNY 501

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           +     Y  LI    + N   D E ++ +M E+ ++PD      LV+ Y K GN D+A+ 
Sbjct: 502 KPTTDTYKSLIHCMCEINRSVDGEGLMVEMVESEVIPDHEICRALVNGYCKEGNADKAES 561

Query: 314 AFESLRSHGFQ-PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
              S  +  FQ  D + +NS++  Y + G     M L D M+ +G 
Sbjct: 562 LLVSF-AQDFQFFDSESFNSLVKVYRDVGNETKLMELQDRMLKAGF 606


>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
 gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
          Length = 1056

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 136/298 (45%), Gaps = 5/298 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI+   K   + DA    +K  + G  P +VT + ++    +   +D+  +  E + 
Sbjct: 4   YNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEMA 63

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P+   YN+++ A +  G+ K   SL++ M  +G       +  +++   + G++ 
Sbjct: 64  GRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGEIE 123

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++ + M    F P +E  T+L+ A  + G  D+A   F  ++ +G  PD     +M+
Sbjct: 124 AAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNTMV 183

Query: 440 AAYGKKNLLDKALNLLLELEKDGFE-PGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
               K   L+ A  ++L+L  + F  P   T+T+ VD L +   +  A +    + + G 
Sbjct: 184 DGLYKAGRLEAA-GMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGV 242

Query: 499 APPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDA 556
           +P      +L D   +AG   K   ALG L  K  Q G   F  +++GL     L++A
Sbjct: 243 SPNTVTYDALIDGLCKAG---KLDIALGLLRDKNSQAGMFAFSSLLHGLCQAHRLEEA 297



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 87/379 (22%), Positives = 159/379 (41%), Gaps = 47/379 (12%)

Query: 220  PSRIDWINLLDRL----REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLED 275
            P+ I + +++D L    R      YF   E +  +E    +V  YS LID   K   +++
Sbjct: 681  PNAITYSSIVDGLCKAGRVTEALGYF---EKMARDEVVAPHVIAYSALIDGLCKAGRIDE 737

Query: 276  AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
            A   L++M   G +PD+VT ++L++    AG +D   E F  +   G + D   YN+MI 
Sbjct: 738  AYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMIN 797

Query: 336  AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD------------------ 377
            AY   G+     +L++ M T GI ++   +  +++  A CG+                  
Sbjct: 798  AYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIK--ALCGNDRIDEAVSYFHSIPEDCR 855

Query: 378  --VRGAGQITNIMRIEEFQPTLE-------------SCTLLVEAYG--QAGDPDQARSNF 420
              +     IT+++     +  LE             +C  +    G  +AG P+ A    
Sbjct: 856  DEISYNTLITSLVASRRSEQALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLL 915

Query: 421  DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
              M   GH PD R    MI+   K   L  A +   E+ +   +P    Y+ L+D   + 
Sbjct: 916  QEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKA 975

Query: 481  QLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF 540
              +++A +LL      G  P   +  ++ D   +     KAL+ +  +++K  + G   +
Sbjct: 976  DKVDDAWKLL---RSSGIEPTITMYSTMVDSLCKNRGTDKALEVIREMKSKNCEPGIHIW 1032

Query: 541  ERIINGLLAGGFLQDAQRV 559
              +    +A G + +A ++
Sbjct: 1033 TSLATAYVAEGRVDEAVKL 1051



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 118/266 (44%), Gaps = 5/266 (1%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E     +V  ++ ++D   KE  + DA  + K+  E G  P++VT + L+   SK   +D
Sbjct: 501 ESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMD 560

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A +    +   G + +   Y++++   +  G+ +  + ++  M  +G       Y  L+
Sbjct: 561 EALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLI 620

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
             F +   +R A  +   M    F P++ + T L     ++G  D+A    DYM   G  
Sbjct: 621 DGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCA 680

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKD-GFEPGPATYTVLVDWLGRLQLINEAEQ 488
           P+    +S++    K   + +AL    ++ +D    P    Y+ L+D L +   I+EA +
Sbjct: 681 PNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYE 740

Query: 489 LLGKISELGEAP---PFKIQVS-LCD 510
            L ++   G  P    F I ++ LCD
Sbjct: 741 FLERMIRAGRIPDVVTFSILINGLCD 766



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 127/282 (45%), Gaps = 5/282 (1%)

Query: 248  LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
            ++E   + ++  Y+ +I+A+  +     A  +L++M  +GI  + VT  +++        
Sbjct: 780  MAERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDR 839

Query: 308  LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            +D A   F S+       D+  YN++I + V + + +  + L+  M+  G       Y+ 
Sbjct: 840  IDEAVSYFHSIPED--CRDEISYNTLITSLVASRRSEQALELLRAMVADGGSPDACNYMT 897

Query: 368  LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
            ++    + G    A ++   MR     P L + T+++    +A     A   F+ M+R  
Sbjct: 898  VMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKN 957

Query: 428  HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             KPD    +S+I A+ K + +D A  LL      G EP    Y+ +VD L + +  ++A 
Sbjct: 958  LKPDAIVYSSLIDAFCKADKVDDAWKLL---RSSGIEPTITMYSTMVDSLCKNRGTDKAL 1014

Query: 488  QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLE 529
            +++ ++      P   I  SL   Y   G   +A++ +  L+
Sbjct: 1015 EVIREMKSKNCEPGIHIWTSLATAYVAEGRVDEAVKLVNDLQ 1056



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/338 (20%), Positives = 139/338 (41%), Gaps = 22/338 (6%)

Query: 241 FKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNE-NGIVPDIVTSTVLV 299
           ++  EL+   E    NV  +S LI        +  A  + ++M    GI P+  T   L+
Sbjct: 365 YRHVELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYERMVAVEGISPNRFTYAFLL 424

Query: 300 HMYSKAGNLDRAKEAFESL-----RSHG----------------FQPDKKVYNSMIMAYV 338
               KAG+  R ++ FE +     RS                   +P    YN+++    
Sbjct: 425 EGLCKAGDSRRLEQCFEQMLEREWRSSSSWPIHSPEVDFLMVQVCRPTLVTYNTLVTGLS 484

Query: 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398
            +G  +  + L++ MI SG+      + ++L    +   +  A  +         +P + 
Sbjct: 485 KSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVV 544

Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
           + + L++   +    D+A      M+ LG + +    ++++    K   ++ A+ +L ++
Sbjct: 545 TYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQM 604

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
              G  P   TY  L+D   + Q + EA  LL ++ E G  P      +LC    R+G  
Sbjct: 605 RDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRF 664

Query: 519 KKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDA 556
            +A++ L ++ A+        +  I++GL   G + +A
Sbjct: 665 DEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEA 702



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 122/301 (40%), Gaps = 42/301 (13%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ L+   +K   + DA  +L+ M E+G+ PD++T   ++    K   +  A   F+   
Sbjct: 476 YNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRAL 535

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +P+   Y+++I       +    + L+  M+  G   +   Y  ++    + G + 
Sbjct: 536 ERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRME 595

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  +   MR                                     G  PD     ++I
Sbjct: 596 DAVVVLRQMR-----------------------------------DAGCLPDAVTYNTLI 620

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             + K+  L +A+ LL E+ + GF P   TYT L   L R    +EA ++L  ++  G A
Sbjct: 621 DGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCA 680

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLE--AKKEQMGPD--DFERIINGLLAGGFLQD 555
           P      S+ D   +AG   +  +ALG+ E  A+ E + P    +  +I+GL   G + +
Sbjct: 681 PNAITYSSIVDGLCKAG---RVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDE 737

Query: 556 A 556
           A
Sbjct: 738 A 738



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/235 (22%), Positives = 104/235 (44%), Gaps = 3/235 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N   Y+ L++A   +   ++A  +L++M  NG  P+++T  +++    K G ++ A    
Sbjct: 70  NAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGEIEAAFRVV 129

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + +   GF PD +++  ++ A    G+          ++  G       Y  ++    + 
Sbjct: 130 DEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNTMVDGLYKA 189

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  AG +  ++      PT+ + T+ V+   +AG+   A   FD M + G  P+    
Sbjct: 190 GRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGVSPNTVTY 249

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
            ++I    K   LD AL LL +      + G   ++ L+  L +   + EA QLL
Sbjct: 250 DALIDGLCKAGKLDIALGLLRDKNS---QAGMFAFSSLLHGLCQAHRLEEAIQLL 301



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 96/221 (43%), Gaps = 6/221 (2%)

Query: 242  KVAELVLSEESFQTNVRD---YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVL 298
            ++ E V    S   + RD   Y+ LI +       E A  +L+ M  +G  PD      +
Sbjct: 839  RIDEAVSYFHSIPEDCRDEISYNTLITSLVASRRSEQALELLRAMVADGGSPDACNYMTV 898

Query: 299  VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
            +    KAG+ + A +  + +RS G  PD + Y  MI     A Q  L     + M+   +
Sbjct: 899  MDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKNL 958

Query: 359  ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418
            +    +Y +L+ +F +   V  A +   ++R    +PT+   + +V++  +    D+A  
Sbjct: 959  KPDAIVYSSLIDAFCKADKVDDAWK---LLRSSGIEPTITMYSTMVDSLCKNRGTDKALE 1015

Query: 419  NFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELE 459
                M     +P      S+  AY  +  +D+A+ L+ +L+
Sbjct: 1016 VIREMKSKNCEPGIHIWTSLATAYVAEGRVDEAVKLVNDLQ 1056



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 67/308 (21%), Positives = 113/308 (36%), Gaps = 53/308 (17%)

Query: 246 LVLSEESFQT-NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK 304
           L L  ESF +  V  ++  +D  +K   L  A      M + G+ P+ VT   L+    K
Sbjct: 199 LQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGVSPNTVTYDALIDGLCK 258

Query: 305 AGNLD-----------------------------RAKEAFESLRSHGFQPDKKVYNSMIM 335
           AG LD                             R +EA + L++    P+   +NS++ 
Sbjct: 259 AGKLDIALGLLRDKNSQAGMFAFSSLLHGLCQAHRLEEAIQLLKAMPCVPNVVCFNSLMN 318

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIM-RIEEFQ 394
               A +      L D+M  SG       Y  LL+   +   +  A +   +M R E   
Sbjct: 319 GLCQARRVDEAFELFDVMKESGCSADVITYNILLKGLCKLRRIPEAYRHVELMRRTEGCS 378

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM----IAAYGKKNLLDK 450
           P + + + L++    AG  +QA   ++ M+ +     +R T +     +   G    L++
Sbjct: 379 PNVVTFSTLIQGLCNAGRVNQAWEVYERMVAVEGISPNRFTYAFLLEGLCKAGDSRRLEQ 438

Query: 451 ALNLLLE------------------LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               +LE                  L      P   TY  LV  L +  ++ +A  LL  
Sbjct: 439 CFEQMLEREWRSSSSWPIHSPEVDFLMVQVCRPTLVTYNTLVTGLSKSGMVRDALGLLEF 498

Query: 493 ISELGEAP 500
           + E G +P
Sbjct: 499 MIESGLSP 506



 Score = 43.9 bits (102), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 53/254 (20%), Positives = 105/254 (41%), Gaps = 7/254 (2%)

Query: 233 REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDI 292
           +E   +  F+V + ++ +  F  +V  ++ L+ A  +   +++A    +++   G  PD 
Sbjct: 118 KEGEIEAAFRVVDEMV-DRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDA 176

Query: 293 VTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDM 352
           VT   +V    KAG L+ A    + L      P    +   +     AG         D 
Sbjct: 177 VTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDS 236

Query: 353 MITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGD 412
           M  +G+  +   Y AL+    + G +  A     ++R +  Q  + + + L+    QA  
Sbjct: 237 MPQTGVSPNTVTYDALIDGLCKAGKLDIA---LGLLRDKNSQAGMFAFSSLLHGLCQAHR 293

Query: 413 PDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTV 472
            ++A      M  +   P+  C  S++    +   +D+A  L   +++ G      TY +
Sbjct: 294 LEEAIQLLKAMPCV---PNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSADVITYNI 350

Query: 473 LVDWLGRLQLINEA 486
           L+  L +L+ I EA
Sbjct: 351 LLKGLCKLRRIPEA 364


>gi|255556466|ref|XP_002519267.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541582|gb|EEF43131.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 665

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/315 (21%), Positives = 139/315 (44%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           FQ NV  Y+ LI+   +E  +++   +L +M E GI P+++T + ++   S  GN++ A 
Sbjct: 245 FQPNVSVYNALINGFCREYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNVELAL 304

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
             +  +   G  P+   + S++  Y   G+    +++ + M   G E +   Y  L+   
Sbjct: 305 AVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYNTLIHGL 364

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
              G +  A  +++ M      P + +   L++ + +AGD   A   ++ M+  G  P+ 
Sbjct: 365 CSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAGDLVGASEIWNKMMTNGCIPNV 424

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               SM+    + ++  +A +L+ ++  D   P   T+   +  L     +  A  L  +
Sbjct: 425 VVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFNTFIKGLCCSGRVECAINLFCQ 484

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
           + + G +P  K    + D   +    K+AL+ +  +E K  ++    +  I  G    G 
Sbjct: 485 MEQYGCSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGMELNLVTYNTIFGGFCNVGK 544

Query: 553 LQDAQRVHGLMEAQG 567
            ++A ++ G M   G
Sbjct: 545 FEEALKLLGKMLVGG 559



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 128/291 (43%), Gaps = 5/291 (1%)

Query: 241 FKVAELVL-----SEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTS 295
           +KV E+ L      E+    NV  YS +I + +    +E A  +  KM   G  P++ T 
Sbjct: 263 YKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNVELALAVWAKMFVRGCSPNVYTF 322

Query: 296 TVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMIT 355
           T L+  Y   G +  A   +  +   GF+P+   YN++I    + G+    +S+   M  
Sbjct: 323 TSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMER 382

Query: 356 SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ 415
           +G   +   Y AL+  FA+ GD+ GA +I N M      P +   T +V    ++    Q
Sbjct: 383 NGCSPNVSTYGALIDGFAKAGDLVGASEIWNKMMTNGCIPNVVVYTSMVNVLCRSSMFSQ 442

Query: 416 ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
           A S  + M      P+     + I        ++ A+NL  ++E+ G  P   TY  ++D
Sbjct: 443 AWSLIEKMSTDNCPPNTVTFNTFIKGLCCSGRVECAINLFCQMEQYGCSPNIKTYNEVLD 502

Query: 476 WLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALG 526
            L +   I EA +L+ ++ E G         ++   +   G  ++AL+ LG
Sbjct: 503 GLLKENRIKEALELVTEMEEKGMELNLVTYNTIFGGFCNVGKFEEALKLLG 553



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 133/301 (44%), Gaps = 46/301 (15%)

Query: 219 QPSRIDWINLLDRLREQNTQLYFKVAELVLSE---ESFQTNVRDYSKLIDAHAKENCLED 275
           QP+   + +LLD +  +N    F++ E + S    +  + NV  Y+ L+ A  K N ++ 
Sbjct: 146 QPTVKIYNHLLDAMLSENR---FQMIEPIYSNMKRDGKEPNVYTYNILLKALCKNNRVDG 202

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A ++L +M+  G  PD+V+ T ++   SK G ++ A+E   S+R   FQP+  VYN++I 
Sbjct: 203 ACKLLVEMSNKGCEPDVVSYTTVISSMSKLGKVEEAREL--SIR---FQPNVSVYNALIN 257

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
            +    + K    L+  M+  GI+ +   Y  ++ S +  G+V                 
Sbjct: 258 GFCREYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNV----------------- 300

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
                             + A + +  M   G  P+     S++  Y  +  + +ALN+ 
Sbjct: 301 ------------------ELALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIW 342

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
             + ++GFEP    Y  L+  L     + EA  +  K+   G +P      +L D +A+A
Sbjct: 343 NRMAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKA 402

Query: 516 G 516
           G
Sbjct: 403 G 403



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/275 (22%), Positives = 113/275 (41%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  ++ L+  +     + +A  I  +M E G  P++V    L+H     G +  A    
Sbjct: 318 NVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVS 377

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +  +G  P+   Y ++I  +  AG       + + M+T+G   +  +Y +++    + 
Sbjct: 378 SKMERNGCSPNVSTYGALIDGFAKAGDLVGASEIWNKMMTNGCIPNVVVYTSMVNVLCRS 437

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
                A  +   M  +   P   +    ++    +G  + A + F  M + G  P+ +  
Sbjct: 438 SMFSQAWSLIEKMSTDNCPPNTVTFNTFIKGLCCSGRVECAINLFCQMEQYGCSPNIKTY 497

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             ++    K+N + +AL L+ E+E+ G E    TY  +      +    EA +LLGK+  
Sbjct: 498 NEVLDGLLKENRIKEALELVTEMEEKGMELNLVTYNTIFGGFCNVGKFEEALKLLGKMLV 557

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEA 530
            G  P      +L   Y   G  K A+Q L  L A
Sbjct: 558 GGVKPDAITYNTLTYAYCMQGKVKTAIQLLDKLSA 592



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 81/378 (21%), Positives = 169/378 (44%), Gaps = 14/378 (3%)

Query: 206 DPSPLLAEWKELLQPSRIDWINLLDRLR-EQNTQLYFKVAELVLSEESFQTNVRDYSKLI 264
           +P     E++E+  P  I   +++ RLR E +  L       + + ++FQ     Y  +I
Sbjct: 29  NPGNKPPEYQEIKTP--IKESDVVMRLRTETDIVLASNYFRSIANSKAFQHTQLTYQIMI 86

Query: 265 DAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQ 324
           +   +E  ++  + +L++M   GI         +++ Y + G  ++A + F  +R  G Q
Sbjct: 87  EKLGRECDVDGVQYLLQQMKLEGISCSEDLFINVINTYRRVGLAEQALKMFYRIREFGCQ 146

Query: 325 PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQI 384
           P  K+YN ++ A ++  + ++   +   M   G E +   Y  LL++  +   V GA ++
Sbjct: 147 PTVKIYNHLLDAMLSENRFQMIEPIYSNMKRDGKEPNVYTYNILLKALCKNNRVDGACKL 206

Query: 385 TNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGK 444
              M  +  +P + S T ++ +  + G  ++AR      + +  +P+     ++I  + +
Sbjct: 207 LVEMSNKGCEPDVVSYTTVISSMSKLGKVEEARE-----LSIRFQPNVSVYNALINGFCR 261

Query: 445 KNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKI 504
           +  + +   LL ++ + G +P   TY+ ++  L  +  +  A  +  K+   G +P    
Sbjct: 262 EYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNVELALAVWAKMFVRGCSPNVYT 321

Query: 505 QVSLCDMYARAGIEKKALQALGFLEAKKEQ-MGPD--DFERIINGLLAGGFLQDAQRVHG 561
             SL   Y   G   + L+AL       E+   P+   +  +I+GL + G + +A  V  
Sbjct: 322 FTSLMKGYFMRG---RVLEALNIWNRMAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSS 378

Query: 562 LMEAQGFAASERLKVALI 579
            ME  G + +     ALI
Sbjct: 379 KMERNGCSPNVSTYGALI 396



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 95/220 (43%), Gaps = 1/220 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y  LID  AK   L  A  I  KM  NG +P++V  T +V++  ++    +A    
Sbjct: 388 NVSTYGALIDGFAKAGDLVGASEIWNKMMTNGCIPNVVVYTSMVNVLCRSSMFSQAWSLI 447

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E + +    P+   +N+ I     +G+ +  ++L   M   G   + + Y  +L    + 
Sbjct: 448 EKMSTDNCPPNTVTFNTFIKGLCCSGRVECAINLFCQMEQYGCSPNIKTYNEVLDGLLKE 507

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
             ++ A ++   M  +  +  L +   +   +   G  ++A      M+  G KPD    
Sbjct: 508 NRIKEALELVTEMEEKGMELNLVTYNTIFGGFCNVGKFEEALKLLGKMLVGGVKPDAITY 567

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDG-FEPGPATYTVLV 474
            ++  AY  +  +  A+ LL +L   G + P  A YT L+
Sbjct: 568 NTLTYAYCMQGKVKTAIQLLDKLSAGGKWVPEVAAYTSLL 607



 Score = 45.8 bits (107), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 1/126 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E+  + N+  Y+ +          E+A ++L KM   G+ PD +T   L + Y   G 
Sbjct: 520 MEEKGMELNLVTYNTIFGGFCNVGKFEEALKLLGKMLVGGVKPDAITYNTLTYAYCMQGK 579

Query: 308 LDRAKEAFESLRSHG-FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           +  A +  + L + G + P+   Y S++    N    +  +  +D M+  GI  +   + 
Sbjct: 580 VKTAIQLLDKLSAGGKWVPEVAAYTSLLWGICNQIGVEEAVLYLDKMLNEGICLNAATWN 639

Query: 367 ALLRSF 372
           AL+R  
Sbjct: 640 ALVRGL 645



 Score = 38.5 bits (88), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 27/137 (19%), Positives = 57/137 (41%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +S ++   N   ++  I        +E A  +  +M + G  P+I T   ++    K   
Sbjct: 450 MSTDNCPPNTVTFNTFIKGLCCSGRVECAINLFCQMEQYGCSPNIKTYNEVLDGLLKENR 509

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A E    +   G + +   YN++   + N G+ +  + L+  M+  G++     Y  
Sbjct: 510 IKEALELVTEMEEKGMELNLVTYNTIFGGFCNVGKFEEALKLLGKMLVGGVKPDAITYNT 569

Query: 368 LLRSFAQCGDVRGAGQI 384
           L  ++   G V+ A Q+
Sbjct: 570 LTYAYCMQGKVKTAIQL 586


>gi|297816088|ref|XP_002875927.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321765|gb|EFH52186.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 657

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 153/351 (43%), Gaps = 12/351 (3%)

Query: 220 PSRIDWINLLDRLREQN-TQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAER 278
           PS   + ++LD L  +N  Q+ + V    +  + F+ NV  Y+ L+ A  K N ++ A++
Sbjct: 143 PSVKIYNHVLDTLLGENRIQMIYMVYR-DMKRDGFEPNVFTYNVLLKALCKNNKVDGAKK 201

Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338
           +L +M+  G  P+ V+ T ++    + G +   ++  E      F+P   VYN++I    
Sbjct: 202 LLVEMSNKGCCPNAVSYTTVISSMCEVGMVKEGRQLAER-----FEPVVSVYNALINGLC 256

Query: 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398
                K G+ L+  M+  GI  +   Y  L+   +  G +  A  +   M      P + 
Sbjct: 257 KERDYKGGVELMSEMVEKGISPNVISYSTLINELSNSGQIELAFSLLAQMLKRGCHPNIH 316

Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIR-LGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
           + + LV+     G    A   ++ MIR  G +P+     +++  +     +DKA+++ L 
Sbjct: 317 TLSSLVKGCFVRGTTFDALDMWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIDKAVSVFLH 376

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI 517
           +E+ G  P   TY  L++   +   +  A  +  K+   G  P   +  S+ +   R   
Sbjct: 377 MEEIGCSPNIRTYGSLINGFTKRGSLEGAVYIWNKMLTSGCCPNVVVYTSMVEALCRHSK 436

Query: 518 EKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQ 566
            K+A   +  +   KE   P    F   I GL   G L  A++V   ME Q
Sbjct: 437 FKEAESLIEIMS--KENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQ 485



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 76/344 (22%), Positives = 145/344 (42%), Gaps = 6/344 (1%)

Query: 218 LQPSRIDWINLLDRLREQN-TQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           + P+ I +  L++ L      +L F +   +L +     N+   S L+          DA
Sbjct: 276 ISPNVISYSTLINELSNSGQIELAFSLLAQML-KRGCHPNIHTLSSLVKGCFVRGTTFDA 334

Query: 277 ERILKKMNEN-GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
             +  +M    G+ P++V    LV  +   GN+D+A   F  +   G  P+ + Y S+I 
Sbjct: 335 LDMWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIDKAVSVFLHMEEIGCSPNIRTYGSLIN 394

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
            +   G  +  + + + M+TSG   +  +Y +++ +  +    + A  +  IM  E   P
Sbjct: 395 GFTKRGSLEGAVYIWNKMLTSGCCPNVVVYTSMVEALCRHSKFKEAESLIEIMSKENCAP 454

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS-MIAAYGKKNLLDKALNL 454
           ++ +    ++    AG  D A   F  M +    P +  T + ++    K N +++A  L
Sbjct: 455 SVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQYRCPPNIVTYNELLDGLAKANRIEEAYGL 514

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
             E+   G E   +TY  L+       L   A QL+GK+   G++P       +   Y +
Sbjct: 515 TREIFMRGVEWSTSTYNTLLHGSCNAGLPGIALQLVGKMMVNGKSPDEITMNMIILAYCK 574

Query: 515 AGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDA 556
            G  ++A+Q L  +   + +  PD   +  +I GL      +D 
Sbjct: 575 QGKAERAVQMLDLVSCGRRKWRPDVISYTNVIWGLCRSNCREDG 618



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 73/360 (20%), Positives = 142/360 (39%), Gaps = 11/360 (3%)

Query: 228 LLDRLREQNT-QLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNEN 286
           +L RLR+++   L     + + +   F+     +  +I   A +  ++  + +L++M   
Sbjct: 45  VLKRLRQESCVPLALHFFKSIANSNLFKHTPLTFEVMIRKLAMDGQVDSVQYLLQQMKLQ 104

Query: 287 GI--VPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPK 344
           G     D+  S + V  Y + G  +RA E F  ++  G  P  K+YN ++   +   + +
Sbjct: 105 GFHCSEDLFISVISV--YRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQ 162

Query: 345 LGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
           +   +   M   G E +   Y  LL++  +   V GA ++   M  +   P   S T ++
Sbjct: 163 MIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPNAVSYTTVI 222

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
            +  + G   + R   +       +P      ++I    K+      + L+ E+ + G  
Sbjct: 223 SSMCEVGMVKEGRQLAERF-----EPVVSVYNALINGLCKERDYKGGVELMSEMVEKGIS 277

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQA 524
           P   +Y+ L++ L     I  A  LL ++ + G  P      SL       G    AL  
Sbjct: 278 PNVISYSTLINELSNSGQIELAFSLLAQMLKRGCHPNIHTLSSLVKGCFVRGTTFDALDM 337

Query: 525 LG-FLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQT 583
               +     Q     +  ++ G  + G +  A  V   ME  G + + R   +LI+  T
Sbjct: 338 WNQMIRGFGLQPNVVAYNTLVQGFCSHGNIDKAVSVFLHMEEIGCSPNIRTYGSLINGFT 397


>gi|255583688|ref|XP_002532598.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527686|gb|EEF29795.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 553

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/317 (21%), Positives = 135/317 (42%), Gaps = 41/317 (12%)

Query: 238 QLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTV 297
            L  ++ E V ++  +  N  D   LI A+ K+     AE++L  MN+ G VP++V+ T 
Sbjct: 121 HLVSQILEWVRTQSWWDFNEMDSLMLITAYGKQGNFSAAEKVLSYMNKMGYVPNVVSHTA 180

Query: 298 LVHMYSKAGNLDRAKEAFESLRSHG----------------------------------- 322
           L+  Y +    + A+  F  ++S G                                   
Sbjct: 181 LMEAYGRGARYNNAEAIFRRMQSSGPKPSAVTYQIILKNFVEGNKFKEAEEVFETLLDEE 240

Query: 323 ---FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
               +PD+K+++ MI  +  AG  +    +  +M   G+ +S   Y +L+ SF    + +
Sbjct: 241 KSPLKPDQKMFHMMIYMHRKAGNYEKARQIFALMTQRGVPKSTVTYNSLM-SFET--NYK 297

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
              +I + M+    QP + S  LL+ AYG+A   D+A + F+ M+  G +P  +    ++
Sbjct: 298 EVSKIYDQMQRSGLQPDVISYALLINAYGKARREDEALAVFEEMLDAGVRPTHKAYNILL 357

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            A+    ++++A  +   + +D + P   +YT ++        +  AE    ++ + G  
Sbjct: 358 DAFAISGMVEQARTVFKSMRRDRYTPDLCSYTTMLSAYVNASDMAGAENFFNRLKQDGLE 417

Query: 500 PPFKIQVSLCDMYARAG 516
           P      +L   YA+  
Sbjct: 418 PNVVTYGALIKGYAKTN 434



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 141/314 (44%), Gaps = 12/314 (3%)

Query: 219 QPSRIDWINLLDRLREQNTQLYFK----VAELVLSEES--FQTNVRDYSKLIDAHAKENC 272
           +PS + +  +L    E N    FK    V E +L EE    + + + +  +I  H K   
Sbjct: 207 KPSAVTYQIILKNFVEGNK---FKEAEEVFETLLDEEKSPLKPDQKMFHMMIYMHRKAGN 263

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
            E A +I   M + G+    VT   L+   S   N     + ++ ++  G QPD   Y  
Sbjct: 264 YEKARQIFALMTQRGVPKSTVTYNSLM---SFETNYKEVSKIYDQMQRSGLQPDVISYAL 320

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I AY  A +    +++ + M+ +G+  + + Y  LL +FA  G V  A  +   MR + 
Sbjct: 321 LINAYGKARREDEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQARTVFKSMRRDR 380

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
           + P L S T ++ AY  A D   A + F+ + + G +P+     ++I  Y K N LDK +
Sbjct: 381 YTPDLCSYTTMLSAYVNASDMAGAENFFNRLKQDGLEPNVVTYGALIKGYAKTNNLDKMM 440

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
               E++  G +     +T ++D  G+ +    A     ++ + G  P  K +  L  + 
Sbjct: 441 EKYEEMQLRGVKANQTIFTTIMDAYGKNKDFGSAVIWYKEMEQYGVPPDQKAKNILLSLA 500

Query: 513 ARAGIEKKALQALG 526
             A  +K+A Q +G
Sbjct: 501 KTADEQKEANQMVG 514



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 108/248 (43%), Gaps = 16/248 (6%)

Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311
           SF+TN ++ SK+ D                +M  +G+ PD+++  +L++ Y KA   D A
Sbjct: 291 SFETNYKEVSKIYD----------------QMQRSGLQPDVISYALLINAYGKARREDEA 334

Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
              FE +   G +P  K YN ++ A+  +G  +   ++   M           Y  +L +
Sbjct: 335 LAVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQARTVFKSMRRDRYTPDLCSYTTMLSA 394

Query: 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
           +    D+ GA    N ++ +  +P + +   L++ Y +  + D+    ++ M   G K +
Sbjct: 395 YVNASDMAGAENFFNRLKQDGLEPNVVTYGALIKGYAKTNNLDKMMEKYEEMQLRGVKAN 454

Query: 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
                +++ AYGK      A+    E+E+ G  P      +L+          EA Q++G
Sbjct: 455 QTIFTTIMDAYGKNKDFGSAVIWYKEMEQYGVPPDQKAKNILLSLAKTADEQKEANQMVG 514

Query: 492 KISELGEA 499
              + G+A
Sbjct: 515 HSGDCGDA 522


>gi|115468576|ref|NP_001057887.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|113595927|dbj|BAF19801.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|125597608|gb|EAZ37388.1| hypothetical protein OsJ_21726 [Oryza sativa Japonica Group]
          Length = 687

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 93/404 (23%), Positives = 168/404 (41%), Gaps = 46/404 (11%)

Query: 194 ITDKILSLEKE----EDPSPLLAEWKELLQPSRIDWIN--LLDRLREQNTQLYFKVAELV 247
           + D +LS+  +    +D    +A  +EL  P      N  LL   R+++ +L  ++ E +
Sbjct: 124 VVDTLLSVLADRGLLDDAVRAVARVRELRVPPNTRTCNHILLRLARDRSGRLVRRLFEQL 183

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
            +   F  N+     +ID   KE  L +A  +  +M E G +PD+VT   L+  Y K G 
Sbjct: 184 PAPNVFTFNI-----VIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGE 238

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           LD  ++  E +R  G + D   YN++I  +   G+ +        M   G+  +   +  
Sbjct: 239 LDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFST 298

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR-- 425
            + +F + G VR A ++   MR+        + T L++   +AG  D A    D M+R  
Sbjct: 299 FVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQG 358

Query: 426 ---------------------------------LGHKPDDRCTASMIAAYGKKNLLDKAL 452
                                             G + ++    ++I  +      +KAL
Sbjct: 359 VPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKAL 418

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
            LL E++  G E   + Y  L+  L  +  ++EA+ LL K+ E G  P + I  ++ D  
Sbjct: 419 GLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDAC 478

Query: 513 ARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDA 556
            ++G   +A+  L  +     Q     +  +I+GL   G + +A
Sbjct: 479 FKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEA 522



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 124/274 (45%), Gaps = 16/274 (5%)

Query: 224 DWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKM 283
           D I LLD +  Q   L                NV  Y+ L+D   KE  + +AE +L+ M
Sbjct: 346 DAIVLLDEMVRQGVPL----------------NVVTYTVLVDGLCKERKVAEAEDVLRMM 389

Query: 284 NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343
            + G+  + +  T L+H +    N ++A      +++ G + D  +Y ++I    N  + 
Sbjct: 390 EKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKL 449

Query: 344 KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403
               SL+  M  SG+E +  IY  ++ +  + G V  A  +   +    FQP + +   L
Sbjct: 450 DEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCAL 509

Query: 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGF 463
           ++   +AG  D+A S+F+ M  LG  P+ +   +++    K   L++A+ L  E+   G 
Sbjct: 510 IDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGM 569

Query: 464 EPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
                 YT L+D   +   +++A  L  K+ + G
Sbjct: 570 SLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSG 603



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 72/321 (22%), Positives = 136/321 (42%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LID   K   L+DA  +L +M   G+  ++VT TVLV    K   +  A++    + 
Sbjct: 331 YTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMME 390

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G + ++ +Y ++I  +      +  + L+  M   G+E    +Y AL++       + 
Sbjct: 391 KAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLD 450

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  +   M     +P     T +++A  ++G   +A +    ++  G +P+     ++I
Sbjct: 451 EAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALI 510

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
               K   +D+A++   ++   G +P    YT LVD L +   +NEA QL  ++   G +
Sbjct: 511 DGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMS 570

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
               +  +L D Y + G    A      +     Q+    +   I+G      + +A+ V
Sbjct: 571 LDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREV 630

Query: 560 HGLMEAQGFAASERLKVALIS 580
              M   G A    +   LIS
Sbjct: 631 FSEMIGHGIAPDRAVYNCLIS 651



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 99/213 (46%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E   + N   Y+ ++DA  K   + +A  +L+K+ ++G  P+++T   L+    KAG+
Sbjct: 459 MDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGS 518

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D A   F  +R  G  P+ + Y +++      G     + L + M+  G+   + +Y A
Sbjct: 519 IDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTA 578

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           LL  + + G++  A  +   M     Q  L   T  +  +       +AR  F  MI  G
Sbjct: 579 LLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHG 638

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
             PD      +I+ Y K   L++A++L  E+E+
Sbjct: 639 IAPDRAVYNCLISKYQKLGNLEEAISLQDEMER 671



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 108/242 (44%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +  +  + ++  Y  LI      + L++A+ +L KM+E+G+ P+ +  T ++    K+G 
Sbjct: 424 MKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGK 483

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A    + +   GFQP+   Y ++I     AG     +S  + M   G++ + + Y A
Sbjct: 484 VPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTA 543

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    + G +  A Q+ N M  +         T L++ Y + G+   A +    MI  G
Sbjct: 544 LVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSG 603

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            + D  C    I+ +   N++ +A  +  E+   G  P  A Y  L+    +L  + EA 
Sbjct: 604 LQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAI 663

Query: 488 QL 489
            L
Sbjct: 664 SL 665



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 108/253 (42%), Gaps = 15/253 (5%)

Query: 198 ILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKVAELV-----LSEE 251
           + ++ K ++   LL +  E  L+P+ I +  ++D   +       KV E +     + + 
Sbjct: 443 LCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSG-----KVPEAIAMLQKILDS 497

Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311
            FQ NV  Y  LID   K   +++A     KM + G+ P++   T LV    K G L+ A
Sbjct: 498 GFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEA 557

Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
            + F  +   G   DK VY +++  Y+  G      +L   MI SG++     Y   +  
Sbjct: 558 VQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISG 617

Query: 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
           F     +  A ++ + M      P       L+  Y + G+ ++A S  D M R+   P 
Sbjct: 618 FCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAISLQDEMERV--LPS 675

Query: 432 DRCTASMIAAYGK 444
             CT S  A  GK
Sbjct: 676 --CTDSDTATDGK 686



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/195 (22%), Positives = 83/195 (42%)

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P + +   L++ YG+ G+ D+     + M R G K D     ++I  + K   ++ A   
Sbjct: 221 PDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGY 280

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
              ++++G      T++  VD   +  L+ EA +L  ++   G A        L D   +
Sbjct: 281 FAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCK 340

Query: 515 AGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERL 574
           AG    A+  L  +  +   +    +  +++GL     + +A+ V  +ME  G  A+E L
Sbjct: 341 AGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELL 400

Query: 575 KVALISSQTFNRQRQ 589
              LI     N+  +
Sbjct: 401 YTTLIHGHFMNKNSE 415


>gi|359492658|ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Vitis vinifera]
          Length = 939

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 142/306 (46%), Gaps = 5/306 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENG-IVPDIVTSTVLVHMYSKAG 306
           +SE+    NV  Y+ LI  + K+  +++AE++L+ M E   +VPD     VL+  Y + G
Sbjct: 287 MSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTG 346

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            +D A    + +   G + +  + NS+I  Y   G+      ++  M+   ++     Y 
Sbjct: 347 KIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYN 406

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            LL  + + G    A  + + M  E  +PT+ +   L++   + G  D A   +  M++ 
Sbjct: 407 TLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKR 466

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G  PD+   ++++    K    + A  L  ++   GF     T+  ++  L ++  + EA
Sbjct: 467 GVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEA 526

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
           E++  K+ +LG +P      +L D Y +A    +A +  G +E  +E + P     + N 
Sbjct: 527 EEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAME--REPISPS--IEMYNS 582

Query: 547 LLAGGF 552
           L++G F
Sbjct: 583 LISGLF 588



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 146/328 (44%), Gaps = 5/328 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           ++R  + L++   K      A  + ++M   GIVPD+   +++V+ + K G +D A    
Sbjct: 190 SLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFV 249

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + + + G +P+   Y+S+I  YV+ G  +    ++  M   G+ R+   Y  L++ + + 
Sbjct: 250 KKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQ 309

Query: 376 GDVRGAGQITNIMRIE-EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
             +  A ++   M+ E    P   +  +L++ Y + G  D A    D M+RLG K +   
Sbjct: 310 CKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFI 369

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
             S+I  Y K+  + +A  ++  +     +P   +Y  L+D   R    +EA  L  K+ 
Sbjct: 370 CNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKML 429

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGF 552
           + G  P      +L     R G    ALQ    +   K  + PD+  +  +++GL     
Sbjct: 430 QEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLM--MKRGVAPDEVGYSTLLDGLFKMEN 487

Query: 553 LQDAQRVHGLMEAQGFAASERLKVALIS 580
            + A  +   + A+GF  S      +IS
Sbjct: 488 FEGASTLWKDILARGFTKSRITFNTMIS 515



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 142/317 (44%), Gaps = 5/317 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  Y  LID   KE  L+ A     +M ENG+  +I+  + +V    + G +D A    
Sbjct: 611 NIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLM 670

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + +  HGF PD + +    + Y  A   K+  SL D    + +  +  +Y   +    + 
Sbjct: 671 QKMVDHGFFPDHECFLKSDIRY--AAIQKIADSL-DESCKTFLLPNNIVYNIAIAGLCKT 727

Query: 376 GDVRGAGQITNIMRIEEFQP-TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
           G V  A +  +++ ++ F P     CTL +  Y  AG+ D+A    D M+R G  P+   
Sbjct: 728 GKVDDARRFFSMLSLKGFVPDNFTYCTL-IHGYSAAGNVDEAFRLRDEMLRRGLVPNIVT 786

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
             ++I    K   +D+A  L  +L + G  P   TY  L+D   ++  ++ A +L  K+ 
Sbjct: 787 YNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMI 846

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQ 554
           E G +P      +L +   + G  +++++ L  +          ++  ++ G +  G +Q
Sbjct: 847 EEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTLVQGYIRSGEMQ 906

Query: 555 DAQRVHGLMEAQGFAAS 571
              +++ +M  +  + +
Sbjct: 907 KIHKLYDMMHIRCLSTT 923



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/378 (22%), Positives = 158/378 (41%), Gaps = 15/378 (3%)

Query: 211 LAEWKELLQPSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAK 269
           + +W   L+P    +  LLD   RE +T   F + + +L +E  +  V  Y+ L+    +
Sbjct: 393 MVDWN--LKPDSYSYNTLLDGYCREGHTSEAFNLCDKML-QEGIEPTVLTYNTLLKGLCR 449

Query: 270 ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKV 329
               +DA +I   M + G+ PD V  + L+    K  N + A   ++ + + GF   +  
Sbjct: 450 VGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRIT 509

Query: 330 YNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389
           +N+MI      G+      + D M   G       Y  L+  + +  +V  A ++   M 
Sbjct: 510 FNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAME 569

Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD 449
            E   P++E    L+    ++    +       M   G  P+     ++I  + K+ +LD
Sbjct: 570 REPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLD 629

Query: 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLC 509
           KA +   E+ ++G        + +V  L RL  I+EA  L+ K+ + G  P         
Sbjct: 630 KAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDH------- 682

Query: 510 DMYARAGIEKKALQALG--FLEAKKEQMGPDD--FERIINGLLAGGFLQDAQRVHGLMEA 565
           + + ++ I   A+Q +     E+ K  + P++  +   I GL   G + DA+R   ++  
Sbjct: 683 ECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSL 742

Query: 566 QGFAASERLKVALISSQT 583
           +GF         LI   +
Sbjct: 743 KGFVPDNFTYCTLIHGYS 760



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 94/399 (23%), Positives = 167/399 (41%), Gaps = 46/399 (11%)

Query: 187 ITGKCKLITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLD-RLREQNTQLYFKVA 244
           I+G CK+   K++  E EE    +  + K+L   P  I +  L+D   +  N    FKV 
Sbjct: 514 ISGLCKM--GKMV--EAEE----IFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVK 565

Query: 245 ELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK 304
              +  E    ++  Y+ LI    K   L +   +L +M   G+ P+IVT   L+  + K
Sbjct: 566 G-AMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCK 624

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
            G LD+A  ++  +  +G   +  + ++M+      G+      L+  M+  G     E 
Sbjct: 625 EGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHEC 684

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL-ESC-----------TLLVEAYGQAGD 412
           +L          D+R A        I++   +L ESC            + +    + G 
Sbjct: 685 FLK--------SDIRYAA-------IQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGK 729

Query: 413 PDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTV 472
            D AR  F  +   G  PD+    ++I  Y     +D+A  L  E+ + G  P   TY  
Sbjct: 730 VDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNA 789

Query: 473 LVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK- 531
           L++ L + + ++ A++L  K+ + G  P      +L D Y + G    A +    L+ K 
Sbjct: 790 LINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFK----LKDKM 845

Query: 532 -KEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQG 567
            +E + P    +  +INGL   G ++ + ++   M   G
Sbjct: 846 IEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAG 884



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 86/178 (48%), Gaps = 2/178 (1%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           +LS + F  +   Y  LI  ++    +++A R+  +M   G+VP+IVT   L++   K+ 
Sbjct: 739 MLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSE 798

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           N+DRA+  F  L   G  P+   YN++I  Y   G       L D MI  GI  S   Y 
Sbjct: 799 NVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYS 858

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTL-ESCTLLVEAYGQAGDPDQARSNFDYM 423
           AL+    + GD+  + ++ N M        L E CT LV+ Y ++G+  +    +D M
Sbjct: 859 ALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCT-LVQGYIRSGEMQKIHKLYDMM 915



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 77/348 (22%), Positives = 139/348 (39%), Gaps = 39/348 (11%)

Query: 258 RDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFES 317
           R Y  LID + +   ++DA R+L +M   G+  ++     L++ Y K G +  A+     
Sbjct: 333 RAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITR 392

Query: 318 LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
           +     +PD   YN+++  Y   G      +L D M+  GIE +   Y  LL+   + G 
Sbjct: 393 MVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGA 452

Query: 378 VRGAGQITNIM--------------------RIEEFQ--PTLESCTL------------- 402
              A QI ++M                    ++E F+   TL    L             
Sbjct: 453 FDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNT 512

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           ++    + G   +A   FD M  LG  PD     ++I  Y K + + +A  +   +E++ 
Sbjct: 513 MISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREP 572

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522
             P    Y  L+  L + + + E   LL ++   G  P      +L D + + G+  KA 
Sbjct: 573 ISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAF 632

Query: 523 QALGFLEAKKEQMGPDDF--ERIINGLLAGGFLQDAQRVHGLMEAQGF 568
            +  + E  +  +  +      +++GL   G + +A  +   M   GF
Sbjct: 633 SS--YFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGF 678



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/329 (21%), Positives = 136/329 (41%), Gaps = 7/329 (2%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           V  E +F   V D   ++  + ++   ++A  +   M + G +P + +   L++   K G
Sbjct: 148 VYREFAFSPTVFD--MILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNG 205

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
               A   ++ +   G  PD  + + M+ A+   G+       V  M   G+E +   Y 
Sbjct: 206 ETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYH 265

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI-R 425
           +L+  +   GDV  A  +   M  +     + + TLL++ Y +    D+A      M   
Sbjct: 266 SLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEE 325

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
               PD+R    +I  Y +   +D A+ LL E+ + G +        L++   +   I+E
Sbjct: 326 AALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHE 385

Query: 486 AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERI 543
           AE ++ ++ +    P      +L D Y R G   +A       +  +E + P    +  +
Sbjct: 386 AEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCD--KMLQEGIEPTVLTYNTL 443

Query: 544 INGLLAGGFLQDAQRVHGLMEAQGFAASE 572
           + GL   G   DA ++  LM  +G A  E
Sbjct: 444 LKGLCRVGAFDDALQIWHLMMKRGVAPDE 472


>gi|302790315|ref|XP_002976925.1| hypothetical protein SELMODRAFT_105729 [Selaginella moellendorffii]
 gi|300155403|gb|EFJ22035.1| hypothetical protein SELMODRAFT_105729 [Selaginella moellendorffii]
          Length = 395

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 146/334 (43%), Gaps = 61/334 (18%)

Query: 229 LDRLREQN-TQLYFKVAELVLSEESFQ----TNVRDYSKLIDAHAKENCLEDAERILKKM 283
           LD    +N  ++Y K   ++ + ++ Q     +V  +++ I  H K    ++A RI + M
Sbjct: 12  LDAFLGKNIVKMYLKCGSVMDASKALQEMVEPDVTLWTETIAEHTKRGMAKEALRIFQTM 71

Query: 284 NENGIVPDIVT--------------------------------STVLVHMYSKAGNLDRA 311
             NG+ P+ +T                                +T ++H YSK  +  +A
Sbjct: 72  QLNGVAPNKITFLTALNSCSRLEDLRDIHDKIVQGGAESNPMVATTIIHRYSKFSSSGKA 131

Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
           ++ F+ +R     PD  VYN M+ AY   G  +  + L   M   GI   +  +LA+L S
Sbjct: 132 RQVFDKVR----DPDVFVYNVMVAAYAKDGLYEESLGLFQRMQMEGITPDKITFLAMLDS 187

Query: 372 FAQCGDVRG--AGQITNIMRIEEF---QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
              C D R    GQ+ + M IEE       ++  T L+  Y + GD + A++ F+ M   
Sbjct: 188 ---CQDERALKTGQLVHRM-IEETGLGSAMIDISTGLISMYSKCGDLEAAKAIFEAM--- 240

Query: 427 GHKPDDRCT---ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATY-TVLVDWLGRLQL 482
               ++R     +S+IAAY   N + +AL L  E+++ GF P P T+ +VL     R  L
Sbjct: 241 ----EERSVITWSSIIAAYAHHNRVSQALELFEEMQQAGFAPSPVTFLSVLSACSHRGLL 296

Query: 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
                     I + G  P  +    + D++ R+G
Sbjct: 297 YRAITYFASMIQDYGLTPLGQHYGCVVDLFGRSG 330


>gi|297829236|ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328340|gb|EFH58759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 92/391 (23%), Positives = 169/391 (43%), Gaps = 17/391 (4%)

Query: 186 PITGKCKLITDKILSLEKEEDPSPLLAEWK-ELLQPSRIDWINLLDRL-REQNTQLYFKV 243
           P      ++ D++   +K ++   +  +   ++  P  I + +L+D L +       +K+
Sbjct: 410 PNVRTVNIMVDRLCKSQKLDEACAIFEQMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKI 469

Query: 244 AELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS 303
            E +L  +  +TN   Y+ LI         ED  +I K M      PD+      +    
Sbjct: 470 YEKMLDSDC-RTNSIVYTSLIKNFFNHGRKEDGHKIYKDMVNQNCSPDLQLLNTYMDCMF 528

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363
           KAG  ++ +  FE ++S  F PD + Y+ +I   + AG       L   M   G      
Sbjct: 529 KAGEPEKGRAMFEEIKSRRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTR 588

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
            Y  ++  F +CG V  A Q+   M+ + F+PT+ +   +++   +    D+A   F+  
Sbjct: 589 AYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEA 648

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483
                + +    +S+I  +GK   +D+A  +L EL + G  P   T+  L+D L + + I
Sbjct: 649 KSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNSLLDALVKAEEI 708

Query: 484 NEAEQLLGKISELGEAP---PFKIQVS-LCDMYARAGIEKKALQALGFL-EAKKEQMGPD 538
           NEA      + EL   P    + I ++ LC +       +K  +A  F  E +K+ M P 
Sbjct: 709 NEALVCFQSMKELKCTPNQVTYGILINGLCKV-------RKFNKAFVFWQEMQKQGMKPS 761

Query: 539 --DFERIINGLLAGGFLQDAQRVHGLMEAQG 567
              +  +I+GL   G + +A  +    +A G
Sbjct: 762 TISYTTMISGLAKAGNIAEAGALFDRFKANG 792



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 96/400 (24%), Positives = 163/400 (40%), Gaps = 18/400 (4%)

Query: 182 EEPKPITGKCKLITDKILSLEKEE-DPSPLLAEWKELLQPSRIDWINLLDRLREQNTQL- 239
           E+P    G  +++ D    LE     PS   A      +P     I +L RL++ N  + 
Sbjct: 24  EKPYTFEGNRQIVNDICNVLETGAWGPSAENALSALNFKPQPEFVIGVLRRLKDVNRAIE 83

Query: 240 YFK----VAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTS 295
           YF+      EL    ES       Y+ L+   A+    +  ++IL +M+  G  P + T 
Sbjct: 84  YFRWYERRTELPHCPES-------YNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTC 136

Query: 296 TVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMIT 355
             +V    KA  L    +  +++R   F+P    Y ++I A+       + ++L   M  
Sbjct: 137 IEMVLSCVKANKLREGFDVVQNMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQE 196

Query: 356 SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ 415
            G E +  ++  L+R FA+ G V  A  + + M+       +    + ++++G+ G  D 
Sbjct: 197 LGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDM 256

Query: 416 ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
           A   F  +   G KPD+    SMI    K N LD+A+ +   LEK+   P    Y  ++ 
Sbjct: 257 AWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIM 316

Query: 476 WLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQM 535
             G     +EA  LL +    G  P       +     + G   K  +AL   E  K+  
Sbjct: 317 GYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMG---KVDEALRVFEEMKKDA 373

Query: 536 GPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASER 573
            P+   +  +I+ L   G L  A  +   M+  G   + R
Sbjct: 374 APNLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVR 413



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 88/363 (24%), Positives = 154/363 (42%), Gaps = 40/363 (11%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +   S   ++  Y+  ID+  K   ++ A +   ++  NG+ PD VT T ++ +  KA  
Sbjct: 229 MKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANR 288

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           LD A E FE L  +   P    YN+MIM Y +AG+     SL++     G   S   Y  
Sbjct: 289 LDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNC 348

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           +L    + G V  A ++   M+ ++  P L +  +L++   +AG  D A    D M + G
Sbjct: 349 ILTCLRKMGKVDEALRVFEEMK-KDAAPNLSTYNILIDMLCRAGKLDCAFELRDSMQKAG 407

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P+ R    M+    K   LD+A  +  +++     P   T+  L+D LG++  +++A 
Sbjct: 408 LFPNVRTVNIMVDRLCKSQKLDEACAIFEQMDYKVCTPDEITFCSLIDGLGKVGRVDDAY 467

Query: 488 QLLGKI------------------------SELGE-----------APPFKIQVSLCDMY 512
           ++  K+                         E G            +P  ++  +  D  
Sbjct: 468 KIYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMVNQNCSPDLQLLNTYMDCM 527

Query: 513 ARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAA 570
            +AG  +K  +A+ F E K  +  PD   +  +I+GL+  GF  +   +   M+ QG   
Sbjct: 528 FKAGEPEKG-RAM-FEEIKSRRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVL 585

Query: 571 SER 573
             R
Sbjct: 586 DTR 588



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 66/297 (22%), Positives = 129/297 (43%), Gaps = 5/297 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  Y+ LID   +   L+ A  +   M + G+ P++ T  ++V    K+  LD A   F
Sbjct: 376 NLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAIF 435

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E +      PD+  + S+I      G+      + + M+ S    +  +Y +L+++F   
Sbjct: 436 EQMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKIYEKMLDSDCRTNSIVYTSLIKNFFNH 495

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G      +I   M  +   P L+     ++   +AG+P++ R+ F+ +      PD R  
Sbjct: 496 GRKEDGHKIYKDMVNQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKSRRFVPDARSY 555

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
           + +I    K    ++   L   +++ G       Y +++D   +   +N+A QLL ++  
Sbjct: 556 SILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKT 615

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
            G  P      S+ D  A+  I++     + F EAK +++   +   +I   L  GF
Sbjct: 616 KGFEPTVVTYGSVIDGLAK--IDRLDEAYMLFEEAKSKRI---ELNVVIYSSLIDGF 667



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 103/248 (41%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F  + R YS LI    K     +   +   M E G V D     +++  + K G +++A 
Sbjct: 548 FVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAY 607

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           +  E +++ GF+P    Y S+I       +      L +   +  IE +  IY +L+  F
Sbjct: 608 QLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGF 667

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + G +  A  I   +  +   P + +   L++A  +A + ++A   F  M  L   P+ 
Sbjct: 668 GKVGRIDEAYLILEELMQKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQ 727

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
                +I    K    +KA     E++K G +P   +YT ++  L +   I EA  L  +
Sbjct: 728 VTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDR 787

Query: 493 ISELGEAP 500
               G  P
Sbjct: 788 FKANGGVP 795



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 104/252 (41%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +  + F+  V  Y  +ID  AK + L++A  + ++     I  ++V  + L+  + K G 
Sbjct: 613 MKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGR 672

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D A    E L   G  P+   +NS++ A V A +    +     M       ++  Y  
Sbjct: 673 IDEAYLILEELMQKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGI 732

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    +      A      M+ +  +P+  S T ++    +AG+  +A + FD     G
Sbjct: 733 LINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANG 792

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD  C  +MI      N    A +L  E  + G      T  VL+D L +   + +A 
Sbjct: 793 GVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLHIHNKTCVVLLDTLHKNDCLEQAA 852

Query: 488 QLLGKISELGEA 499
            +   + E G+A
Sbjct: 853 IVGAVLRETGKA 864



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 6/175 (3%)

Query: 218 LQPSRIDWINLLDRL---REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           L P+   W +LLD L    E N  L   V    + E     N   Y  LI+   K     
Sbjct: 688 LTPNVYTWNSLLDALVKAEEINEAL---VCFQSMKELKCTPNQVTYGILINGLCKVRKFN 744

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
            A    ++M + G+ P  ++ T ++   +KAGN+  A   F+  +++G  PD   YN+MI
Sbjct: 745 KAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMI 804

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389
               N  +     SL +     G+    +  + LL +  +   +  A  +  ++R
Sbjct: 805 EGLSNGNRAMDAFSLFEETRRRGLHIHNKTCVVLLDTLHKNDCLEQAAIVGAVLR 859


>gi|449436321|ref|XP_004135941.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g53170-like [Cucumis sativus]
 gi|449514880|ref|XP_004164505.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g53170-like [Cucumis sativus]
          Length = 477

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 100/413 (24%), Positives = 174/413 (42%), Gaps = 65/413 (15%)

Query: 154 KIYGLDLSDPKWTEVAEKIHERGEMILPEEPKPITGKCKLITDKILSLEKEEDPSPLLAE 213
           KI+GL L   +W E   + + +  M+L        GKCK           + + + LL E
Sbjct: 112 KIFGL-LRQQQWYEPRCQTYTKLLMLL--------GKCK-----------QPEQASLLFE 151

Query: 214 --WKELLQPSRIDWINLLDRLREQNTQLYFKVAEL--VLSEESFQTNVRDYSKLIDAHAK 269
             + E L+PS ID    L     Q+  L+  ++ +  + S    + +V  YS LID   +
Sbjct: 152 IMFSEGLKPS-IDVYTALVSAYGQSGLLHKAISTVDEMKSISDCKPDVHTYSILIDCCTR 210

Query: 270 ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF-ESLRSHGFQPDKK 328
               +  ++IL  M+  GI  + VT   +++ + KA   ++ +    E + S    PD  
Sbjct: 211 LRRFDLLKKILADMSCLGITCNTVTYNTIINGFGKAKMFEQMESLLLEMIESDSCPPDLI 270

Query: 329 VYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIM 388
            +N+ I AY N+ Q +            GIE     Y +++ S+ + G       + N M
Sbjct: 271 TFNTFIRAYGNSEQIEKMEKWYKEFQLMGIEPDIWTYNSMISSYGKAGMYDKMKSVLNFM 330

Query: 389 RIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLL 448
               F PT+ +   +++++G+AG+ ++    F  M   G KP+     S++ AYGK   L
Sbjct: 331 EKRFFSPTIVTMNTIIDSFGRAGNIEEMEEYFKNMKFQGMKPNSVTYCSLVNAYGKSGDL 390

Query: 449 DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSL 508
           +K  ++L ++E     P    +  L++  G+           G + ++GE          
Sbjct: 391 EKVDSILRQIENSDVVPDTPLFNCLINVYGQ----------AGNVRKMGEL--------- 431

Query: 509 CDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRV 559
                             FLE K+ +  PD   F  +I  L A G  +DAQR+
Sbjct: 432 ------------------FLEMKENKCVPDGITFATMIRALKAQGMTEDAQRL 466


>gi|147841262|emb|CAN75614.1| hypothetical protein VITISV_022293 [Vitis vinifera]
          Length = 590

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 102/217 (47%), Gaps = 4/217 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI  + K+    +A  I  +M   G+ PDIVT   L++ + + G   R +EA    R
Sbjct: 235 YNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREG---RMREALRLFR 291

Query: 320 S-HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
             +G  P+   Y ++I  Y      +  + L ++M   G+      Y ++LR   + G +
Sbjct: 292 EINGATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKI 351

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
           + A ++ N M   + +P   +C  L+ AY + GD   A      M+  G KPD     ++
Sbjct: 352 KDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKAL 411

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
           I  + K + +D A   L E+   GF P  +TY+ LVD
Sbjct: 412 IHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVD 448



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/361 (19%), Positives = 146/361 (40%), Gaps = 33/361 (9%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
             F+ ++   + L+++ AK        ++ KKM   G+VP+I    VL+H   K+G++++
Sbjct: 156 HGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEK 215

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE----------- 359
           A++    + S    PD   YN++I  Y   G     + + D M   G+            
Sbjct: 216 AEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIY 275

Query: 360 ------RSEE----------------IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
                 R  E                 Y  L+  + +  D+  A ++  +M +E   P +
Sbjct: 276 GFCREGRMREALRLFREINGATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGV 335

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
            +   ++    + G    A    + M     +PD+    ++I AY K   +  A+ +  +
Sbjct: 336 VTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKK 395

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI 517
           + + G +P   T+  L+    +L  ++ A++ L ++ + G +P +     L D Y     
Sbjct: 396 MLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQDN 455

Query: 518 EKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVA 577
           ++  ++    L  K   +    +  +I  L     ++ A+R+  LM+ +G      +  +
Sbjct: 456 KEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGKGMKGDSVVYTS 515

Query: 578 L 578
           L
Sbjct: 516 L 516



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 117/284 (41%), Gaps = 6/284 (2%)

Query: 298 LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG 357
           LV  Y+ +     A + FE +R HGF+P       ++ +   A    +   +   M+  G
Sbjct: 133 LVIFYANSRMTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVG 192

Query: 358 IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
           +  +  I+  L+ +  + GDV  A Q+ N M      P L +   L+  Y + G   +A 
Sbjct: 193 VVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEAL 252

Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
              D M R G  PD     S+I  + ++  + +AL L  E+  +G  P   TYT L+D  
Sbjct: 253 GIQDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFREI--NGATPNHVTYTTLIDGY 310

Query: 478 GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP 537
            R+  + EA +L   +   G  P      S+       G  K A + L   E  + ++ P
Sbjct: 311 CRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLN--EMSERKVEP 368

Query: 538 DDF--ERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
           D+     +IN     G +  A +V   M   G    +    ALI
Sbjct: 369 DNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALI 412



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 76/336 (22%), Positives = 142/336 (42%), Gaps = 20/336 (5%)

Query: 255 TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA 314
           +N +  S L+  +A     +DA ++ + M  +G  P +   TVL++  +KA   +   + 
Sbjct: 125 SNSQILSWLVIFYANSRMTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKV 184

Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
           ++ +   G  P+  ++N +I A   +G  +    L++ M +  I      Y  L+  + +
Sbjct: 185 YKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCK 244

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
            G    A  I + M      P + +   L+  + + G   +A   F  +   G  P+   
Sbjct: 245 KGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFREIN--GATPNHVT 302

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
             ++I  Y + N L++AL L   +E +G  PG  TY  ++  L     I +A +LL ++S
Sbjct: 303 YTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMS 362

Query: 495 ELGEAPPFKIQVSLCDMYARAG-------IEKKALQALGFLEAKKEQMGPD--DFERIIN 545
           E    P      +L + Y + G       ++KK L+A          + PD   F+ +I+
Sbjct: 363 ERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEA---------GLKPDQFTFKALIH 413

Query: 546 GLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
           G      +  A+     M   GF+ S      L+ S
Sbjct: 414 GFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDS 449



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 94/211 (44%), Gaps = 6/211 (2%)

Query: 216 ELLQPSRIDWINLLDRLREQNTQLYFKVAELVL---SEESFQTNVRDYSKLIDAHAKENC 272
           E L P  + + ++L +L E+      K A  +L   SE   + +    + LI+A+ K   
Sbjct: 329 EGLHPGVVTYNSILRKLCEEGK---IKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGD 385

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           +  A ++ KKM E G+ PD  T   L+H + K   +D AKE    +   GF P    Y+ 
Sbjct: 386 MGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSW 445

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           ++ +Y +    +  + L D +   G+     +Y AL+R   +   +  A +I  +M+ + 
Sbjct: 446 LVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGKG 505

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
            +      T L  AY +AG    A    D M
Sbjct: 506 MKGDSVVYTSLAYAYFKAGKAIAASDMLDEM 536



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 93/210 (44%), Gaps = 2/210 (0%)

Query: 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418
           + + +I   L+  +A     + A Q+   MR+  F+P L +CT+L+ +  +A   +    
Sbjct: 124 DSNSQILSWLVIFYANSRMTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWK 183

Query: 419 NFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLG 478
            +  M+R+G  P+      +I A  K   ++KA  LL E+E     P   TY  L+    
Sbjct: 184 VYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYC 243

Query: 479 RLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
           +  +  EA  +  ++   G +P      SL   + R G  ++AL+   F E         
Sbjct: 244 KKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGRMREALRL--FREINGATPNHV 301

Query: 539 DFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
            +  +I+G      L++A R+  +ME +G 
Sbjct: 302 TYTTLIDGYCRVNDLEEALRLREVMEVEGL 331



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 59/131 (45%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           +  F  +   YS L+D++  ++  E   R+  +++  G+  DI     L+    K   ++
Sbjct: 433 DAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIE 492

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A+  F  ++  G + D  VY S+  AY  AG+      ++D M    +  + +IY    
Sbjct: 493 SAERIFTLMQGKGMKGDSVVYTSLAYAYFKAGKAIAASDMLDEMDKRRLMITLKIYRCFS 552

Query: 370 RSFAQCGDVRG 380
            S+A  G + G
Sbjct: 553 ASYAGDGSILG 563


>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Vitis vinifera]
          Length = 755

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 152/374 (40%), Gaps = 39/374 (10%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ LI+   K   +  A   L +M  NG+ P++VT +  +  + K G L  A + F
Sbjct: 324 DVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFF 383

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +R     P++  Y S+I A   AG     + LV+ ++ +GI+ +   Y ALL    + 
Sbjct: 384 VDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEE 443

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD---- 431
           G ++ A ++   M      P  E+ T LV  + +A + + A+     M     KPD    
Sbjct: 444 GRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLY 503

Query: 432 -----DRCTAS--------------------------MIAAYGKKNLLDKALNLLLELEK 460
                  C  S                          ++ AY K     +AL LL E+  
Sbjct: 504 GTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLD 563

Query: 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKK 520
            G      TY  L+D L +  L+ EA    G++SE+G  P   +  +L D   +    + 
Sbjct: 564 LGLIATEVTYCALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEV 623

Query: 521 ALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVAL 578
           A +   F E   + M PD   +  +I+G +  G LQ+A  +   M   G         AL
Sbjct: 624 AKKL--FDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTAL 681

Query: 579 ISSQTFNRQRQPTR 592
           I   + + Q Q  R
Sbjct: 682 IWGLSHSGQVQKAR 695



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/335 (21%), Positives = 152/335 (45%), Gaps = 6/335 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E  F  ++  Y+ LID H K   L++   I ++M +    PD++T   L++ + K   
Sbjct: 281 MKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFER 340

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           + +A E    ++++G +P+   Y++ I A+   G  +  +     M    +  +E  Y +
Sbjct: 341 MPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTS 400

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+ +  + G++  A ++   +     +  + + T L++   + G   +A   F  M+  G
Sbjct: 401 LIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAG 460

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P+     +++  + K   ++ A ++L E+++   +P    Y  ++  L     + EA+
Sbjct: 461 VAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAK 520

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ---MGPDDFERII 544
            L+G+I E G      I  +L D Y ++G   +A +AL  LE   +         +  +I
Sbjct: 521 LLIGEIKESGINTNAVIYTTLMDAYFKSG---QATEALTLLEEMLDLGLIATEVTYCALI 577

Query: 545 NGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
           +GL   G +Q+A    G M   G   +  +  AL+
Sbjct: 578 DGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALV 612



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 139/308 (45%), Gaps = 4/308 (1%)

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           + +  K M   GI   + T  +++    K G+L+ A+  F  ++  GF PD   YNS+I 
Sbjct: 239 SRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLID 298

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
            +   G     + + + M  +  +     Y AL+  F +   +  A +  + M+    +P
Sbjct: 299 GHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKP 358

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
            + + +  ++A+ + G   +A   F  M R+   P++    S+I A  K   L +AL L+
Sbjct: 359 NVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLV 418

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
            E+ + G +    TYT L+D L     + EAE++   +   G AP  +   +L   + +A
Sbjct: 419 EEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKA 478

Query: 516 GIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASER 573
              + A   L   E K++ + PD   +  I+ GL     L++A+ + G ++  G   +  
Sbjct: 479 KEMEYAKDILK--EMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAV 536

Query: 574 LKVALISS 581
           +   L+ +
Sbjct: 537 IYTTLMDA 544



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 76/363 (20%), Positives = 141/363 (38%), Gaps = 18/363 (4%)

Query: 235 QNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKM----------- 283
           Q+ +L  +  E       FQ     Y  L+          DA  +LK++           
Sbjct: 110 QDARLALRFFEWAKGRIGFQHTSEAYCILVHILFCARFYSDANAVLKELICLRRVLPSWD 169

Query: 284 -------NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
                    N  VP       L     + G L+ A E F  +R     P  +  N+++  
Sbjct: 170 VFDLLWATRNVCVPGFGVFDALFSALIELGMLEEASECFLKMRKFRVFPKPRSCNALLHR 229

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
               G+  L       M  +GI+RS   Y  ++    + GD+  A  +   M+   F P 
Sbjct: 230 LSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPD 289

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           + +   L++ +G+ G  D+    F+ M      PD     ++I  + K   + KA   L 
Sbjct: 290 IVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLH 349

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
           E++ +G +P   TY+  +D   +  ++ EA +    +  +   P      SL D   +AG
Sbjct: 350 EMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAG 409

Query: 517 IEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKV 576
              +AL+ +  +     ++    +  +++GL   G +++A+ V   M   G A ++    
Sbjct: 410 NLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYT 469

Query: 577 ALI 579
           AL+
Sbjct: 470 ALV 472



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 117/268 (43%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N   Y+ L+    K   +E A+ ILK+M E  I PD++    ++        L+ AK   
Sbjct: 464 NQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLI 523

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             ++  G   +  +Y +++ AY  +GQ    ++L++ M+  G+  +E  Y AL+    + 
Sbjct: 524 GEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALIDGLCKS 583

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G V+ A      M     QP +   T LV+   +    + A+  FD M+  G  PD    
Sbjct: 584 GLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAY 643

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I    K   L +ALNL   + + G E     YT L+  L     + +A  LL ++  
Sbjct: 644 TALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIG 703

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQ 523
            G  P   + + L   Y   G   +AL+
Sbjct: 704 KGVLPDEVVYMCLIKKYYALGKVDEALE 731



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 73/141 (51%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +SE   Q NV  Y+ L+D   K NC E A+++  +M + G++PD +  T L+    K GN
Sbjct: 596 MSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGN 655

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L  A    + +   G + D   Y ++I    ++GQ +   +L+D MI  G+   E +Y+ 
Sbjct: 656 LQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMC 715

Query: 368 LLRSFAQCGDVRGAGQITNIM 388
           L++ +   G V  A ++ N M
Sbjct: 716 LIKKYYALGKVDEALELQNEM 736



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 101/225 (44%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E    TN   Y+ L+DA+ K     +A  +L++M + G++   VT   L+    K+G 
Sbjct: 526 IKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALIDGLCKSGL 585

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A   F  +   G QP+  VY +++         ++   L D M+  G+   +  Y A
Sbjct: 586 VQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTA 645

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    + G+++ A  + + M     +  L + T L+     +G   +AR+  D MI  G
Sbjct: 646 LIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKG 705

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTV 472
             PD+     +I  Y     +D+AL L  E+ K G   G + + V
Sbjct: 706 VLPDEVVYMCLIKKYYALGKVDEALELQNEMAKRGMITGLSDHAV 750



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 55/250 (22%), Positives = 110/250 (44%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E+  + ++  Y  ++     E+ LE+A+ ++ ++ E+GI  + V  T L+  Y K+G 
Sbjct: 491 MKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQ 550

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
              A    E +   G    +  Y ++I     +G  +  M     M   G++ +  +Y A
Sbjct: 551 ATEALTLLEEMLDLGLIATEVTYCALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTA 610

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    +      A ++ + M  +   P   + T L++   + G+  +A +  D MI +G
Sbjct: 611 LVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIG 670

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            + D     ++I        + KA NLL E+   G  P    Y  L+     L  ++EA 
Sbjct: 671 MELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEAL 730

Query: 488 QLLGKISELG 497
           +L  ++++ G
Sbjct: 731 ELQNEMAKRG 740



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 49/220 (22%), Positives = 88/220 (40%)

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
           ++ AL  +  + G +  A +    MR     P   SC  L+    + G  D +R  F  M
Sbjct: 187 VFDALFSALIELGMLEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDM 246

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483
              G K        MI    K+  L+ A +L  ++++ GF P   TY  L+D  G+L L+
Sbjct: 247 GAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLL 306

Query: 484 NEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERI 543
           +E   +  ++ +    P      +L + + +     KA + L  ++A   +     +   
Sbjct: 307 DECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTF 366

Query: 544 INGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQT 583
           I+     G LQ+A +    M       +E    +LI +  
Sbjct: 367 IDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANC 406


>gi|225451899|ref|XP_002279045.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Vitis vinifera]
          Length = 590

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 102/217 (47%), Gaps = 4/217 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI  + K+    +A  I  +M   G+ PDIVT   L++ + + G   R +EA    R
Sbjct: 235 YNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREG---RMREALRLFR 291

Query: 320 S-HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
             +G  P+   Y ++I  Y      +  + L ++M   G+      Y ++LR   + G +
Sbjct: 292 EINGATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKI 351

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
           + A ++ N M   + +P   +C  L+ AY + GD   A      M+  G KPD     ++
Sbjct: 352 KDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKAL 411

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
           I  + K + +D A   L E+   GF P  +TY+ LVD
Sbjct: 412 IHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVD 448



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/361 (19%), Positives = 146/361 (40%), Gaps = 33/361 (9%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
             F+ ++   + L+++ AK        ++ KKM   G+VP+I    VL+H   K+G++++
Sbjct: 156 HGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEK 215

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE----------- 359
           A++    + S    PD   YN++I  Y   G     + + D M   G+            
Sbjct: 216 AEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIY 275

Query: 360 ------RSEE----------------IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
                 R  E                 Y  L+  + +  D+  A ++  +M +E   P +
Sbjct: 276 GFCREGRMREALRLFREINGATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGV 335

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
            +   ++    + G    A    + M     +PD+    ++I AY K   +  A+ +  +
Sbjct: 336 VTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKK 395

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI 517
           + + G +P   T+  L+    +L  ++ A++ L ++ + G +P +     L D Y     
Sbjct: 396 MLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQDN 455

Query: 518 EKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVA 577
           ++  ++    L  K   +    +  +I  L     ++ A+R+  LM+ +G      +  +
Sbjct: 456 KEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGKGMKGDSVVYTS 515

Query: 578 L 578
           L
Sbjct: 516 L 516



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 117/284 (41%), Gaps = 6/284 (2%)

Query: 298 LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG 357
           LV  Y+ +     A + FE +R HGF+P       ++ +   A    +   +   M+  G
Sbjct: 133 LVIFYANSRMTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVG 192

Query: 358 IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
           +  +  I+  L+ +  + GDV  A Q+ N M      P L +   L+  Y + G   +A 
Sbjct: 193 VVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEAL 252

Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
              D M R G  PD     S+I  + ++  + +AL L  E+  +G  P   TYT L+D  
Sbjct: 253 GIQDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFREI--NGATPNHVTYTTLIDGY 310

Query: 478 GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP 537
            R+  + EA +L   +   G  P      S+       G  K A + L   E  + ++ P
Sbjct: 311 CRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLN--EMSERKVEP 368

Query: 538 DDF--ERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
           D+     +IN     G +  A +V   M   G    +    ALI
Sbjct: 369 DNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALI 412



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 76/336 (22%), Positives = 142/336 (42%), Gaps = 20/336 (5%)

Query: 255 TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA 314
           +N +  S L+  +A     +DA ++ + M  +G  P +   TVL++  +KA   +   + 
Sbjct: 125 SNSQILSWLVIFYANSRMTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKV 184

Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
           ++ +   G  P+  ++N +I A   +G  +    L++ M +  I      Y  L+  + +
Sbjct: 185 YKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCK 244

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
            G    A  I + M      P + +   L+  + + G   +A   F  +   G  P+   
Sbjct: 245 KGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFREIN--GATPNHVT 302

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
             ++I  Y + N L++AL L   +E +G  PG  TY  ++  L     I +A +LL ++S
Sbjct: 303 YTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMS 362

Query: 495 ELGEAPPFKIQVSLCDMYARAG-------IEKKALQALGFLEAKKEQMGPD--DFERIIN 545
           E    P      +L + Y + G       ++KK L+A          + PD   F+ +I+
Sbjct: 363 ERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEA---------GLKPDQFTFKALIH 413

Query: 546 GLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
           G      +  A+     M   GF+ S      L+ S
Sbjct: 414 GFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDS 449



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 94/211 (44%), Gaps = 6/211 (2%)

Query: 216 ELLQPSRIDWINLLDRLREQNTQLYFKVAELVL---SEESFQTNVRDYSKLIDAHAKENC 272
           E L P  + + ++L +L E+      K A  +L   SE   + +    + LI+A+ K   
Sbjct: 329 EGLHPGVVTYNSILRKLCEEGK---IKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGD 385

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           +  A ++ KKM E G+ PD  T   L+H + K   +D AKE    +   GF P    Y+ 
Sbjct: 386 MGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSW 445

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           ++ +Y +    +  + L D +   G+     +Y AL+R   +   +  A +I  +M+ + 
Sbjct: 446 LVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGKG 505

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
            +      T L  AY +AG    A    D M
Sbjct: 506 MKGDSVVYTSLAYAYFKAGKAIAASDMLDEM 536



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 93/210 (44%), Gaps = 2/210 (0%)

Query: 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418
           + + +I   L+  +A     + A Q+   MR+  F+P L +CT+L+ +  +A   +    
Sbjct: 124 DSNSQILSWLVIFYANSRMTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWK 183

Query: 419 NFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLG 478
            +  M+R+G  P+      +I A  K   ++KA  LL E+E     P   TY  L+    
Sbjct: 184 VYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYC 243

Query: 479 RLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
           +  +  EA  +  ++   G +P      SL   + R G  ++AL+   F E         
Sbjct: 244 KKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGRMREALRL--FREINGATPNHV 301

Query: 539 DFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
            +  +I+G      L++A R+  +ME +G 
Sbjct: 302 TYTTLIDGYCRVNDLEEALRLREVMEVEGL 331



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 59/131 (45%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           +  F  +   YS L+D++  ++  E   R+  +++  G+  DI     L+    K   ++
Sbjct: 433 DAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIE 492

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A+  F  ++  G + D  VY S+  AY  AG+      ++D M    +  + +IY    
Sbjct: 493 SAERIFTLMQGKGMKGDSVVYTSLAYAYFKAGKAIAASDMLDEMDKRRLMITLKIYRCFS 552

Query: 370 RSFAQCGDVRG 380
            S+A  G + G
Sbjct: 553 ASYAGDGSILG 563


>gi|255661202|gb|ACU25770.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
          Length = 426

 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 132/300 (44%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS LI    KE   +DA   L+KM E+ +  D+V  + L+ +  K  +  RA   F  L+
Sbjct: 12  YSTLITHFGKEGLFDDALSWLQKMEEDRVPGDLVLYSNLIELSRKLCDYSRAISIFSRLK 71

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  PD   YNSMI  +  A   +   +LV  M T+G+      Y  LL  + +     
Sbjct: 72  RSGIAPDLVAYNSMINVFGKAKLFREARALVSEMRTAGVMPDTVSYCTLLTMYVENQKFL 131

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  + + MR  +    L +C ++++ YGQ G   +A   F  M ++G +P+     +++
Sbjct: 132 EALSLFSEMREIQCSFDLTTCNIMIDVYGQLGMAKEADKLFWSMRKMGIEPNVVSYNTLL 191

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             YG   L  +A++L   +++   E    TY  ++   G+     +A  L+ ++ + G  
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMVIYGKTLEHEKANNLIQEMQDRGIE 251

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
           P      ++  ++ + G   +A      L     ++    ++ +I      G +  A+R+
Sbjct: 252 PNAITYSTIISIWGKVGKLDRAAMLFQKLRCSGIEIDQVLYQTMIVAYERAGLVAHAKRL 311



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 108/223 (48%), Gaps = 18/223 (8%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++  ++ + NV  Y+ ++  + K    E A  ++++M + GI P+ +T + ++ ++ K G
Sbjct: 209 LMQRKNIEQNVVTYNSMMVIYGKTLEHEKANNLIQEMQDRGIEPNAITYSTIISIWGKVG 268

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV-DMMITSGIERSEEIY 365
            LDRA   F+ LR  G + D+ +Y +MI+AY  AG       L+ ++     I R   I+
Sbjct: 269 KLDRAAMLFQKLRCSGIEIDQVLYQTMIVAYERAGLVAHAKRLLQELKRPDNIPRDTAIH 328

Query: 366 LALLRSFAQCGDVRGAGQI---TNIMRIEEFQPTLESCTL---LVEAYGQAGDPDQARSN 419
           +           + GAG+I   T + R       ++  T+   ++  + +          
Sbjct: 329 I-----------LAGAGRIEEATWVFRQAVEAGEVKDITVFERMINLFSKHKKYPNVVEV 377

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           FD M  LG+ P     A ++ AYGK +  DKA ++ +E++ +G
Sbjct: 378 FDKMRGLGYFPHSNVIALVLNAYGKLHEFDKANSVYMEMQDEG 420



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 104/244 (42%), Gaps = 6/244 (2%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +I+   K     +A  ++ +M   G++PD V+   L+ MY +      A   F  +R
Sbjct: 82  YNSMINVFGKAKLFREARALVSEMRTAGVMPDTVSYCTLLTMYVENQKFLEALSLFSEMR 141

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
                 D    N MI  Y   G  K    L   M   GIE +   Y  LLR +   GD  
Sbjct: 142 EIQCSFDLTTCNIMIDVYGQLGMAKEADKLFWSMRKMGIEPNVVSYNTLLRVY---GDAE 198

Query: 380 GAGQITNIMRI---EEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
             G+  ++ R+   +  +  + +   ++  YG+  + ++A +    M   G +P+    +
Sbjct: 199 LFGEAIHLFRLMQRKNIEQNVVTYNSMMVIYGKTLEHEKANNLIQEMQDRGIEPNAITYS 258

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
           ++I+ +GK   LD+A  L  +L   G E     Y  ++    R  L+  A++LL ++   
Sbjct: 259 TIISIWGKVGKLDRAAMLFQKLRCSGIEIDQVLYQTMIVAYERAGLVAHAKRLLQELKRP 318

Query: 497 GEAP 500
              P
Sbjct: 319 DNIP 322



 Score = 46.6 bits (109), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 42/214 (19%), Positives = 88/214 (41%)

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
           R     PD+  Y+++I  +   G     +S +  M    +     +Y  L+    +  D 
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDDALSWLQKMEEDRVPGDLVLYSNLIELSRKLCDY 60

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             A  I + ++     P L +   ++  +G+A    +AR+    M   G  PD     ++
Sbjct: 61  SRAISIFSRLKRSGIAPDLVAYNSMINVFGKAKLFREARALVSEMRTAGVMPDTVSYCTL 120

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           +  Y +     +AL+L  E+ +        T  +++D  G+L +  EA++L   + ++G 
Sbjct: 121 LTMYVENQKFLEALSLFSEMREIQCSFDLTTCNIMIDVYGQLGMAKEADKLFWSMRKMGI 180

Query: 499 APPFKIQVSLCDMYARAGIEKKALQALGFLEAKK 532
            P      +L  +Y  A +  +A+     ++ K 
Sbjct: 181 EPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKN 214


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 153/332 (46%), Gaps = 19/332 (5%)

Query: 242 KVAELVLSEESFQT----NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTV 297
           KV +L  +   F+     N   ++ LI+   +   L+ A  +  +M E     ++V+ T 
Sbjct: 220 KVGDLSKAASLFEAMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEK----NVVSWTT 275

Query: 298 LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG 357
           +++ +S+ G+ ++A   F  +   G +P+     S ++A    G  ++G  + + + ++G
Sbjct: 276 MINGFSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNG 335

Query: 358 IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
            + +  I  AL+  +A+CG+++ A ++     +E     L + ++++  +   G  DQA 
Sbjct: 336 FQLNRGIGTALVDMYAKCGNIKSASRVF----VETKGKDLLTWSVMIWGWAIHGCFDQAL 391

Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD-GFEPGPATYTVLVDW 476
             F  M   G  PD+    +++ A      +D+ LN    +  D   EP    YT++VD 
Sbjct: 392 QCFVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDL 451

Query: 477 LGRLQLINEAEQLLGKISELGEAPPFKIQVSL-CDMYARAGIEKKALQALGFLEAKKEQM 535
           LGR   ++EA   L  I  +   P F I  +L C   A   IE   L A   L+ + +  
Sbjct: 452 LGRAGRLDEA---LSFIQSMPINPDFVIWGALFCACRAHKNIEMAELTAEKLLQLEPKH- 507

Query: 536 GPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
            P  +  + N   A G  +D +RV  LM+ +G
Sbjct: 508 -PGSYVFLSNVYAAVGRWEDVERVRTLMKNRG 538



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 82/204 (40%), Gaps = 8/204 (3%)

Query: 287 GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLG 346
           G+  D      LV MY K G L    + F+            ++N +I      G     
Sbjct: 168 GLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCCKVGDLSKA 227

Query: 347 MSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA 406
            SL + M     ER+   + +L+  F + GD+  A ++     ++  +  + S T ++  
Sbjct: 228 ASLFEAMP----ERNAGSWNSLINGFVRNGDLDRARELF----VQMPEKNVVSWTTMING 279

Query: 407 YGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG 466
           + Q GD ++A S F  M+  G +P+D    S + A  K   L     +   L  +GF+  
Sbjct: 280 FSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLN 339

Query: 467 PATYTVLVDWLGRLQLINEAEQLL 490
               T LVD   +   I  A ++ 
Sbjct: 340 RGIGTALVDMYAKCGNIKSASRVF 363


>gi|449438016|ref|XP_004136786.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Cucumis sativus]
          Length = 707

 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 112/258 (43%), Gaps = 37/258 (14%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++ LI+A        +A R+ KKM +NG+ PD+VT  +++  Y       +A   FE ++
Sbjct: 103 FNNLINACGSCGNWREALRVCKKMTDNGVGPDLVTHNIVLSAYKSGAQYSKALSYFELMK 162

Query: 320 SHGFQPDKKVYN-------------------------------------SMIMAYVNAGQ 342
               +PD    N                                     S+I  Y   GQ
Sbjct: 163 GTNIRPDTTTLNIVIHCLIKVKQYGQAIEIFSSMREKRSECRPDVVTFTSIIHLYSVRGQ 222

Query: 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402
            +   ++   M+  GI+ +   Y AL+ ++A  G  + A  + + M+   F P + S T 
Sbjct: 223 IEDCKAVFSTMLAEGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGFCPDVVSYTS 282

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           L+  +G++  P +AR  FD M R   KP+     +++ AYG    L +A+++L E+E+DG
Sbjct: 283 LISTFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILREMEQDG 342

Query: 463 FEPGPATYTVLVDWLGRL 480
             P   +   L+   GR 
Sbjct: 343 IHPNVVSICTLLAACGRF 360



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 145/341 (42%), Gaps = 12/341 (3%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  ++ +I  ++    +ED + +   M   GI P+IV+   L+  Y+  G    A   F
Sbjct: 206 DVVTFTSIIHLYSVRGQIEDCKAVFSTMLAEGIKPNIVSYNALISAYASHGMDKEAFSVF 265

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + ++  GF PD   Y S+I  +  + QP     + DMM  +  + +   Y AL+ ++   
Sbjct: 266 DEMKRSGFCPDVVSYTSLISTFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSN 325

Query: 376 GDVRGAGQITNIMRIEEFQPTLES-CTLLVEA--YGQAGDPDQARSNFDYMIRLGHKPDD 432
           G +  A  I   M  +   P + S CTLL     +GQ  + D   S  +  +R  H    
Sbjct: 326 GYLPQAVDILREMEQDGIHPNVVSICTLLAACGRFGQKVNIDSVLSAAE--LRGIHLNTI 383

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
            C  S I +Y      +KA+NL   +E    +P   T+T+L+    R+    EA     +
Sbjct: 384 ACN-SAIGSYMNIGEYEKAINLYRSMENKTTKPDSVTFTILISGCCRMSKYEEALCFFKE 442

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAG 550
           + +L      +I  S+   Y++ G   KA ++L F   K     PD   +  +IN   A 
Sbjct: 443 MLDLRIPLSSEIYSSMICAYSKQGQLVKA-ESL-FNSLKGSGCCPDLVTYTAMINAYSAS 500

Query: 551 GFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQPT 591
              +    ++  MEA           AL+  + FN+  Q +
Sbjct: 501 EMWEKVCALYQEMEANNIQLDSIACSALM--KAFNKGNQAS 539



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 111/263 (42%), Gaps = 41/263 (15%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           E  + N+  Y+ LI A+A     ++A  +  +M  +G  PD+V+ T L+  + ++    R
Sbjct: 236 EGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGFCPDVVSYTSLISTFGRSQQPAR 295

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A+E F+ ++ +  +P+   YN+++ AY + G     + ++  M   GI  +      LL 
Sbjct: 296 AREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILREMEQDGIHPNVVSICTLL- 354

Query: 371 SFAQCG---------------DVRGA--------GQITNIMRIEEFQ------------- 394
             A CG               ++RG           I + M I E++             
Sbjct: 355 --AACGRFGQKVNIDSVLSAAELRGIHLNTIACNSAIGSYMNIGEYEKAINLYRSMENKT 412

Query: 395 --PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P   + T+L+    +    ++A   F  M+ L         +SMI AY K+  L KA 
Sbjct: 413 TKPDSVTFTILISGCCRMSKYEEALCFFKEMLDLRIPLSSEIYSSMICAYSKQGQLVKAE 472

Query: 453 NLLLELEKDGFEPGPATYTVLVD 475
           +L   L+  G  P   TYT +++
Sbjct: 473 SLFNSLKGSGCCPDLVTYTAMIN 495



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 63/303 (20%), Positives = 120/303 (39%), Gaps = 37/303 (12%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +I  HA+ N ++ A  +  +M +    PD+ T   L++ + +AG    A    E + 
Sbjct: 33  YNMMIRLHARHNRIDQARGLFFEMQKWRCKPDVETYNALINAHGRAGQWRWATNIMEDML 92

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE---RSEEIYLALLRSFAQCG 376
                P +  +N++I A  + G  +  + +   M  +G+     +  I L+  +S AQ  
Sbjct: 93  RAAIPPSRSTFNNLINACGSCGNWREALRVCKKMTDNGVGPDLVTHNIVLSAYKSGAQYS 152

Query: 377 -----------------------------DVRGAGQITNIM-----RIEEFQPTLESCTL 402
                                         V+  GQ   I      +  E +P + + T 
Sbjct: 153 KALSYFELMKGTNIRPDTTTLNIVIHCLIKVKQYGQAIEIFSSMREKRSECRPDVVTFTS 212

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           ++  Y   G  +  ++ F  M+  G KP+     ++I+AY    +  +A ++  E+++ G
Sbjct: 213 IIHLYSVRGQIEDCKAVFSTMLAEGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSG 272

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522
           F P   +YT L+   GR Q    A ++   +      P      +L D Y   G   +A+
Sbjct: 273 FCPDVVSYTSLISTFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAV 332

Query: 523 QAL 525
             L
Sbjct: 333 DIL 335



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/245 (20%), Positives = 107/245 (43%), Gaps = 4/245 (1%)

Query: 296 TVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMIT 355
            +++ ++++   +D+A+  F  ++    +PD + YN++I A+  AGQ +   ++++ M+ 
Sbjct: 34  NMMIRLHARHNRIDQARGLFFEMQKWRCKPDVETYNALINAHGRAGQWRWATNIMEDMLR 93

Query: 356 SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ 415
           + I  S   +  L+ +   CG+ R A ++   M      P L +  +++ AY       +
Sbjct: 94  AAIPPSRSTFNNLINACGSCGNWREALRVCKKMTDNGVGPDLVTHNIVLSAYKSGAQYSK 153

Query: 416 ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL--EKDGFEPGPATYTVL 473
           A S F+ M     +PD      +I    K     +A+ +   +  ++    P   T+T +
Sbjct: 154 ALSYFELMKGTNIRPDTTTLNIVIHCLIKVKQYGQAIEIFSSMREKRSECRPDVVTFTSI 213

Query: 474 VDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE 533
           +        I + + +   +   G  P      +L   YA  G++K+A     F E K+ 
Sbjct: 214 IHLYSVRGQIEDCKAVFSTMLAEGIKPNIVSYNALISAYASHGMDKEAFSV--FDEMKRS 271

Query: 534 QMGPD 538
              PD
Sbjct: 272 GFCPD 276



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 98/217 (45%), Gaps = 10/217 (4%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS +I A++K+  L  AE +   +  +G  PD+VT T +++ YS +   ++    ++ + 
Sbjct: 455 YSSMICAYSKQGQLVKAESLFNSLKGSGCCPDLVTYTAMINAYSASEMWEKVCALYQEME 514

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           ++  Q D    ++++ A+    Q    + L ++M   GI  ++  +  +L + +   D R
Sbjct: 515 ANNIQLDSIACSALMKAFNKGNQASNVLILAEIMKEKGIPFNDANFFEMLSACSILRDWR 574

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  + N+M       +L +   L++  G++G  +     F   + LG   +    + ++
Sbjct: 575 KATDLINLMEPSFHLVSLGTINHLLQFLGKSGKTEIMIKLFYRFVALGSSVNINTYSILL 634

Query: 440 AAYGKKNLLD-----KALNLLLELEKDGFEPGPATYT 471
                KNLL      K + +L  +   G +P  A Y 
Sbjct: 635 -----KNLLSAGKWRKYIEVLQWMNDAGIQPSHAMYN 666


>gi|297832060|ref|XP_002883912.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329752|gb|EFH60171.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 623

 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 154/358 (43%), Gaps = 12/358 (3%)

Query: 226 INLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMN 284
           ++LL RL R +N  +++  A++   E   ++NV  ++ +I+   KE  L+ A+  L  M 
Sbjct: 198 LSLLSRLNRIENAWVFY--ADMYRME--IKSNVYTFNIMINVLCKEGKLKKAKGFLGIME 253

Query: 285 ENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPK 344
             GI P IVT   LV  YS  G ++ A+     ++S GFQPD + YN ++    N G+  
Sbjct: 254 SFGIKPTIVTYNTLVQGYSLRGRIEGARMIISEMKSKGFQPDLQTYNPILSWMCNEGRAS 313

Query: 345 LGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
               ++  M   G+      Y  L+R  +  GD+  A    + M  +   PT  +   L+
Sbjct: 314 ---EVLREMKGIGLVPDSVSYNILIRGCSNNGDLETAFAYRDEMVKQGMVPTFYTYNTLI 370

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
                    + A      +   G   D      +I  Y +     KA  L  E+  DG +
Sbjct: 371 HGLFMENKIEAAEILIREIREKGIVLDSVTYNIVINGYCQHGDAKKAFALHDEMMTDGIK 430

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQA 524
           P   TYT L+  L R     EA++L  K+   G  P   +  +L D +   G   +A   
Sbjct: 431 PTQFTYTSLIYVLCRRNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCATGNMDRAFSL 490

Query: 525 LGFLEAKKEQMGPDD--FERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
           L   E  +  + PDD  +  ++ GL   G  ++A+ + G M+ +G          LIS
Sbjct: 491 LK--EMDRMNIDPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLIS 546



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 131/293 (44%), Gaps = 12/293 (4%)

Query: 244 AELVLSE---ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
           A +++SE   + FQ +++ Y+ ++     E     A  +L++M   G+VPD V+  +L+ 
Sbjct: 280 ARMIISEMKSKGFQPDLQTYNPILSWMCNEG---RASEVLREMKGIGLVPDSVSYNILIR 336

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
             S  G+L+ A    + +   G  P    YN++I       + +    L+  +   GI  
Sbjct: 337 GCSNNGDLETAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVL 396

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
               Y  ++  + Q GD + A  + + M  +  +PT  + T L+    +     +A   F
Sbjct: 397 DSVTYNIVINGYCQHGDAKKAFALHDEMMTDGIKPTQFTYTSLIYVLCRRNKTREADELF 456

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
           + ++  G KPD     +++  +     +D+A +LL E+++   +P   TY  L+  L   
Sbjct: 457 EKVVGKGMKPDLVMMNTLMDGHCATGNMDRAFSLLKEMDRMNIDPDDVTYNCLMRGLCGE 516

Query: 481 QLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKA------LQALGF 527
               EA +L+G++   G  P      +L   Y++ G  K A      + +LGF
Sbjct: 517 GKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFIVRDEMLSLGF 569



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 106/241 (43%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI     EN +E AE +++++ E GIV D VT  ++++ Y + G+  +A    + + 
Sbjct: 366 YNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNIVINGYCQHGDAKKAFALHDEMM 425

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G +P +  Y S+I       + +    L + ++  G++    +   L+      G++ 
Sbjct: 426 TDGIKPTQFTYTSLIYVLCRRNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCATGNMD 485

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  +   M      P   +   L+      G  ++AR     M R G KPD     ++I
Sbjct: 486 RAFSLLKEMDRMNIDPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLI 545

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
           + Y KK     A  +  E+   GF P   TY  L+  L + Q    AE+LL ++   G  
Sbjct: 546 SGYSKKGDTKHAFIVRDEMLSLGFNPTLLTYNALLKGLSKNQDGELAEELLREMKSEGIV 605

Query: 500 P 500
           P
Sbjct: 606 P 606



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/220 (21%), Positives = 94/220 (42%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +I+ + +    + A  +  +M  +GI P   T T L+++  +      A E FE + 
Sbjct: 401 YNIVINGYCQHGDAKKAFALHDEMMTDGIKPTQFTYTSLIYVLCRRNKTREADELFEKVV 460

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +PD  + N+++  +   G      SL+  M    I+  +  Y  L+R     G   
Sbjct: 461 GKGMKPDLVMMNTLMDGHCATGNMDRAFSLLKEMDRMNIDPDDVTYNCLMRGLCGEGKFE 520

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++   M+    +P   S   L+  Y + GD   A    D M+ LG  P      +++
Sbjct: 521 EARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFIVRDEMLSLGFNPTLLTYNALL 580

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
               K    + A  LL E++ +G  P  +++  +++ + +
Sbjct: 581 KGLSKNQDGELAEELLREMKSEGIVPNDSSFCSVIEAMSK 620



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 81/187 (43%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI    + N   +A+ + +K+   G+ PD+V    L+  +   GN+DRA    + + 
Sbjct: 436 YTSLIYVLCRRNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCATGNMDRAFSLLKEMD 495

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
                PD   YN ++      G+ +    L+  M   GI+     Y  L+  +++ GD +
Sbjct: 496 RMNIDPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTK 555

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  + + M    F PTL +   L++   +  D + A      M   G  P+D    S+I
Sbjct: 556 HAFIVRDEMLSLGFNPTLLTYNALLKGLSKNQDGELAEELLREMKSEGIVPNDSSFCSVI 615

Query: 440 AAYGKKN 446
            A  K +
Sbjct: 616 EAMSKSD 622


>gi|334182346|ref|NP_172156.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332189906|gb|AEE28027.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 997

 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/335 (22%), Positives = 154/335 (45%), Gaps = 16/335 (4%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           + F  +   YSK+++     + +E A  + ++M   G+V D+ T T++V  + KAG +++
Sbjct: 477 QGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQ 536

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A++ F  +R  G  P+   Y ++I AY+ A +      L + M++ G   +   Y AL+ 
Sbjct: 537 ARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALID 596

Query: 371 SFAQCGDVRGAGQI-------TNIMRIEEF---------QPTLESCTLLVEAYGQAGDPD 414
              + G V  A QI        ++  ++ +         +P + +   L++ + ++   +
Sbjct: 597 GHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVE 656

Query: 415 QARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
           +AR   D M   G +P+     ++I    K   LD+A  +  E+ + GF     TY+ L+
Sbjct: 657 EARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLI 716

Query: 475 DWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ 534
           D   +++  + A ++L K+ E   AP   I   + D   + G   +A + +  +E K  Q
Sbjct: 717 DRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQ 776

Query: 535 MGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
                +  +I+G    G ++    +   M ++G A
Sbjct: 777 PNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVA 811



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 117/290 (40%), Gaps = 30/290 (10%)

Query: 244 AELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS 303
           A  ++  E+F  +   Y+KLI    + +  E+A   L +M     +P++VT + L+    
Sbjct: 289 ALTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCL 348

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363
               L R K     +   G  P  K++NS++ AY  +G       L+  M+  G      
Sbjct: 349 NKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYV 408

Query: 364 IYLALLRSFAQCGD------------------VRGAGQITNIMRIEEFQPTLESCTLLVE 405
           +Y  L+ S   CGD                  +  AG + N + +  F   L S      
Sbjct: 409 VYNILIGSI--CGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCS------ 460

Query: 406 AYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
               AG  ++A S    MI  G  PD    + ++      + ++ A  L  E+++ G   
Sbjct: 461 ----AGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVA 516

Query: 466 GPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
              TYT++VD   +  LI +A +   ++ E+G  P      +L   Y +A
Sbjct: 517 DVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKA 566



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 127/293 (43%), Gaps = 12/293 (4%)

Query: 236 NTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTS 295
           +  +YFK  +    + S + NV  Y  L+D   K + +E+A ++L  M+  G  P+ +  
Sbjct: 622 DVDMYFKQYD----DNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVY 677

Query: 296 TVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMIT 355
             L+    K G LD A+E    +  HGF      Y+S+I  Y    +  L   ++  M+ 
Sbjct: 678 DALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLE 737

Query: 356 SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ 415
           +    +  IY  ++    + G    A ++  +M  +  QP + + T +++ +G  G  + 
Sbjct: 738 NSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIET 797

Query: 416 ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
                + M   G  P+      +I    K   LD A NLL E+++  +    A Y  +++
Sbjct: 798 CLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIE 857

Query: 476 WLGRLQLINEAEQLLGKISELGE---APPFKIQVSLCDMYARAGIEKKALQAL 525
              +     E  + LG + E+G+   AP   +   L D   +A   + AL+ L
Sbjct: 858 GFNK-----EFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLL 905



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 76/362 (20%), Positives = 138/362 (38%), Gaps = 53/362 (14%)

Query: 271 NC--LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKK 328
           NC  L+ AE+   +M   G+V + +  +        AG  ++A      +   GF PD  
Sbjct: 425 NCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTS 484

Query: 329 VYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIM 388
            Y+ ++    NA + +L   L + M   G+      Y  ++ SF + G +  A +  N M
Sbjct: 485 TYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEM 544

Query: 389 RIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP---------DDRCTA--- 436
           R     P + + T L+ AY +A     A   F+ M+  G  P         D  C A   
Sbjct: 545 REVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQV 604

Query: 437 ---------------------------------------SMIAAYGKKNLLDKALNLLLE 457
                                                  +++  + K + +++A  LL  
Sbjct: 605 EKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDA 664

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI 517
           +  +G EP    Y  L+D L ++  ++EA+++  ++SE G         SL D Y +   
Sbjct: 665 MSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKR 724

Query: 518 EKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVA 577
           +  A + L  +           +  +I+GL   G   +A ++  +ME +G   +     A
Sbjct: 725 QDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTA 784

Query: 578 LI 579
           +I
Sbjct: 785 MI 786



 Score = 40.4 bits (93), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 45/209 (21%), Positives = 83/209 (39%), Gaps = 5/209 (2%)

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           VLV  + + G+   A E    L+   F+P +  YN +I A++ A +     SL+   ++ 
Sbjct: 205 VLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLD-SASLIHREMSL 263

Query: 357 GIERSEEIYL-ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ 415
              R +   L     S  + G  R A     ++  E F P     T L+    +A   ++
Sbjct: 264 ANLRMDGFTLRCFAYSLCKVGKWREA---LTLVETENFVPDTVFYTKLISGLCEASLFEE 320

Query: 416 ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
           A    + M      P+    ++++     K  L +   +L  +  +G  P P  +  LV 
Sbjct: 321 AMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVH 380

Query: 476 WLGRLQLINEAEQLLGKISELGEAPPFKI 504
                   + A +LL K+ + G  P + +
Sbjct: 381 AYCTSGDHSYAYKLLKKMVKCGHMPGYVV 409


>gi|302755068|ref|XP_002960958.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
 gi|300171897|gb|EFJ38497.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
          Length = 479

 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 124/274 (45%), Gaps = 6/274 (2%)

Query: 228 LLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNEN 286
           LLD L R + ++    V   + S++  + N   Y  L+ A  +   ++ A   + +M   
Sbjct: 6   LLDLLERARRSEQIVVVFRRIFSQDC-KPNALSYCYLVKALCRTGKIDKACSTIAEMARE 64

Query: 287 GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLG 346
            +VPD+ T  V++    KA  + RA E FE++     +PD   YN+++      G+    
Sbjct: 65  KLVPDVFTYNVVIDTLCKARRISRAIEFFETMP----EPDVVTYNTLLGGLCKNGRVAQA 120

Query: 347 MSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA 406
            SL   M  +GI  S+  Y  L+  F +      A  +  +M   +  PT+ S   ++  
Sbjct: 121 CSLFGSMEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIING 180

Query: 407 YGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG 466
             +    DQA   F+ M   G KPD     ++I     K  L +A +LL  + ++GF+P 
Sbjct: 181 LCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENGFQPD 240

Query: 467 PATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
             T+T L++ L     I EA  L   +++ G AP
Sbjct: 241 KITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAP 274



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 76/358 (21%), Positives = 135/358 (37%), Gaps = 18/358 (5%)

Query: 218 LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           + PS + +  L+D   +    +  + + +L+ S +   T V  Y  +I+   K   ++ A
Sbjct: 132 ITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPT-VYSYCSIINGLCKNRKVDQA 190

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
            ++ ++M   G  PD VT   L+H       L  AK+    +  +GFQPDK  + ++I  
Sbjct: 191 YQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENGFQPDKITFTALIEG 250

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
                + K    L   M   G       +  L+        +R A  +     +  +   
Sbjct: 251 LCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCILRKLRPALSV-----VRNYPAC 305

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGK--KNLLD----- 449
            E+  L    + + G     R  FD   RL  K   R     +  Y    K L D     
Sbjct: 306 PEAVILYTPIFRELGR----RRGFDRAARLLQKMARRGVPPNVVTYTAFFKGLGDWKEGM 361

Query: 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLC 509
           +A      + + G EP    Y VLVD   +   ++ AE+++  + + G  P      +L 
Sbjct: 362 RAYREFRRMLEQGIEPDMVAYNVLVDGFCKADRLDMAEKMVRYMDQSGLPPNIVTYNTLV 421

Query: 510 DMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
             + R G  +   + L  + ++  Q     +  ++ GL   G    A     L  +QG
Sbjct: 422 GHHCRKGKVEAIGELLHTMVSRGRQPDVATWSTLVAGLFMVGQADAAYSFLNLAMSQG 479


>gi|225441858|ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Vitis vinifera]
          Length = 798

 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 129/295 (43%), Gaps = 3/295 (1%)

Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311
           ++  N   +  L++   K    +DA ++  +M + GI P+ +  T+++    +A   D  
Sbjct: 196 NYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDV 255

Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
                +++  G  PD    N+++  +   GQ     +L+ +    G     + Y +L+  
Sbjct: 256 HRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDG 315

Query: 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
             +        +    M     +P +   T+L+  + + G  D A +  + M + G  PD
Sbjct: 316 LFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPD 375

Query: 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
             C  ++I  +    LLDKA +L LE+ K+   P   TYT+L+  + R  L++EA Q+  
Sbjct: 376 TYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFN 435

Query: 492 KISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
           ++  LG +P      +L D   +AG  ++A      +E  K    P  F R+  G
Sbjct: 436 QMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKMEIGK---NPSLFLRLSQG 487



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 149/334 (44%), Gaps = 6/334 (1%)

Query: 230 DRLREQN-TQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGI 288
           D +REQ   +L F+         SF++ V  ++ +ID  AK++  +   +IL+++  + I
Sbjct: 69  DVMREQRRPELGFRFFIWTTRRRSFRSWVT-HNLVIDMLAKDDGFDTYWKILEELKNSNI 127

Query: 289 VPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMS 348
                T +VL+  Y+K+G  ++A E+F  ++  G +PD   YNS++   V      L ++
Sbjct: 128 QIPPPTFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQKEVFLLALA 187

Query: 349 LVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYG 408
           + + M+      +   ++ LL    + G    A ++ + M  +   P     T+++    
Sbjct: 188 VYNQMLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLC 247

Query: 409 QAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPA 468
           QA   D      + M   G  PD     +++  + K   +D+A  LL   EK+G+  G  
Sbjct: 248 QAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIK 307

Query: 469 TYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFL 528
            Y+ L+D L R +  +E ++   K+ + G  P   +   L   +   G+   AL  L   
Sbjct: 308 GYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLN-- 365

Query: 529 EAKKEQMGPDD--FERIINGLLAGGFLQDAQRVH 560
           +  +  + PD   +  +I G    G L  A+ + 
Sbjct: 366 DMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQ 399



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 140/339 (41%), Gaps = 32/339 (9%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           +  +E +   ++ YS LID   +    ++ +   +KM + GI PD+V  T+L+  + + G
Sbjct: 296 LFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVG 355

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            +D A      +   G  PD   YN++I  + + G      SL   +  +    +   Y 
Sbjct: 356 MVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYT 415

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            L+    + G +  A QI N M      P++ +   L++   +AG+ ++AR  F Y + +
Sbjct: 416 ILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLF-YKMEI 474

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G  P    +  +  + G   ++D A                 +   +V+ L    LI +A
Sbjct: 475 GKNP----SLFLRLSQGADRVMDTA-----------------SLQTMVERLCESGLILKA 513

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
            +LL ++++ G  P       L + + +A     A +   F E + +   PD    +  G
Sbjct: 514 YKLLMQLADSGVVPDIMTYNVLINGFCKAKNINGAFKL--FRELQLKGHSPDS---VTYG 568

Query: 547 LLAGGFL-----QDAQRVHGLMEAQGFAASERLKVALIS 580
            L  GF      +DA RV   M   G   S  +   L++
Sbjct: 569 TLIDGFHRVDREEDAFRVLDQMVKNGCTPSSAVYKCLMT 607



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 71/138 (51%), Gaps = 10/138 (7%)

Query: 235 QNTQLYFKV---AELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPD 291
           +N  L+ ++   A+ V+   S QT       +++   +   +  A ++L ++ ++G+VPD
Sbjct: 476 KNPSLFLRLSQGADRVMDTASLQT-------MVERLCESGLILKAYKLLMQLADSGVVPD 528

Query: 292 IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVD 351
           I+T  VL++ + KA N++ A + F  L+  G  PD   Y ++I  +    + +    ++D
Sbjct: 529 IMTYNVLINGFCKAKNINGAFKLFRELQLKGHSPDSVTYGTLIDGFHRVDREEDAFRVLD 588

Query: 352 MMITSGIERSEEIYLALL 369
            M+ +G   S  +Y  L+
Sbjct: 589 QMVKNGCTPSSAVYKCLM 606



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 74/385 (19%), Positives = 148/385 (38%), Gaps = 55/385 (14%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +++     +   Y+ LI        L+ A  +  ++++N   P   T T+L+    + G 
Sbjct: 367 MTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGL 426

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMM-----------ITS 356
           LD A++ F  + + G  P    +N++I     AG+ +    L   M           ++ 
Sbjct: 427 LDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKMEIGKNPSLFLRLSQ 486

Query: 357 GIERSEEI--YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPD 414
           G +R  +      ++    + G +  A ++   +      P + +  +L+  + +A + +
Sbjct: 487 GADRVMDTASLQTMVERLCESGLILKAYKLLMQLADSGVVPDIMTYNVLINGFCKAKNIN 546

Query: 415 QARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
            A   F  +   GH PD     ++I  + + +  + A  +L ++ K+G  P  A Y  L+
Sbjct: 547 GAFKLFRELQLKGHSPDSVTYGTLIDGFHRVDREEDAFRVLDQMVKNGCTPSSAVYKCLM 606

Query: 475 DWLGR-------------------------LQLI------NEAEQLLGKISELG------ 497
            W  R                         L+L        E E+ +  + E+       
Sbjct: 607 TWSCRKGKLSVAFSLWLKYLRSLPSQEDETLKLAEEHFEKGELEKAVRCLLEMNFKLNNF 666

Query: 498 EAPPFKIQ-VSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDA 556
           E  P+ I  + LC    +A   ++AL+    L+  +  + P     +INGL   G L+ A
Sbjct: 667 EIAPYTIWLIGLC----QARRSEEALKIFLVLKECQMDVNPPSCVMLINGLCKDGNLEMA 722

Query: 557 QRVHGLMEAQGFAASERLKVALISS 581
             +      +GF    R+   L+ S
Sbjct: 723 VDIFLYTLEKGFMLMPRICNQLLRS 747


>gi|255572834|ref|XP_002527349.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533268|gb|EEF35021.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 443

 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 118/270 (43%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ LI          DAE++L  M   G  P +VT  +L++   + G L RA +  
Sbjct: 153 DVITYNVLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAIDVL 212

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E +  HG  P+   YN ++  +    + +  +  +  M + G       Y  LL +  + 
Sbjct: 213 EKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCKD 272

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G V  A ++ N +  +   P L +   +++   + G  DQA    D M   G KPD    
Sbjct: 273 GKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDIITY 332

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
           +S++    ++  +D+A+    +LE  G +P   TY  ++  L + +  + A   L  + +
Sbjct: 333 SSLVGGLSREGKVDEAIKFFHDLEVLGVKPNAITYNAIMLGLCKARKTDRAIDFLAYMVQ 392

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
            G  P       L +  A  G+ K+AL+ L
Sbjct: 393 RGCKPTEASYTILIEGLAYEGLAKEALELL 422



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 111/275 (40%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           LE+  R L+ M   G +PDI+  T L+  + K G   +A    E +   G  PD   YN 
Sbjct: 100 LEEGFRFLESMVYRGDIPDIIPCTSLIRGFCKIGKTRKATRIMEIIEDSGAVPDVITYNV 159

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I    + G+      L+  M+  G   S   +  L+    + G +  A  +   M    
Sbjct: 160 LISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAIDVLEKMPKHG 219

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P   S   L+  + +    ++A      M   G  PD     +++ A  K   +D A+
Sbjct: 220 CTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAV 279

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
            LL +L   G  P   TY  ++D L ++   ++A +LL ++   G  P      SL    
Sbjct: 280 ELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDIITYSSLVGGL 339

Query: 513 ARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
           +R G   +A++    LE    +     +  I+ GL
Sbjct: 340 SREGKVDEAIKFFHDLEVLGVKPNAITYNAIMLGL 374


>gi|356510655|ref|XP_003524052.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic-like [Glycine max]
          Length = 712

 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 110/221 (49%), Gaps = 1/221 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS ++D +A+   +E+   + ++    G  PD +T +VL  M+ +AG+ D  +  F+ + 
Sbjct: 262 YSAILDVYARLGKVEEVISLYERGRATGWKPDPITFSVLGKMFGEAGDYDGIRYVFQEME 321

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           S G QP+  VYN+++ A   AG+P     L + MI SGI  +E+   A+++ + +    R
Sbjct: 322 SVGVQPNLVVYNTLLEAMGKAGKPGFARGLFEEMIESGIVPNEKTLTAVIKIYGKARWSR 381

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH-KPDDRCTASM 438
            A ++   M+   +         L+      G  ++A + F  M +  H KPD     +M
Sbjct: 382 DALELWQRMKENGWPMDFILYNTLLNMCADVGLVEEAETLFRDMKQSVHCKPDSWSYTAM 441

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
           +  YG +  +DKA+ L  E+ K G E     +T L+  LGR
Sbjct: 442 LNIYGSQGDVDKAMKLFDEMCKLGVELNVMGFTCLIQCLGR 482



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 132/305 (43%), Gaps = 1/305 (0%)

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
           E +  +M +NG+  D +T + ++    K    D+A   FE +   G  PD+  Y++++  
Sbjct: 209 EDLAHQMIDNGVPLDNITYSTIISCAKKCNLYDKAVHWFERMYKTGLMPDEVTYSAILDV 268

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           Y   G+ +  +SL +    +G +     +  L + F + GD  G   +   M     QP 
Sbjct: 269 YARLGKVEEVISLYERGRATGWKPDPITFSVLGKMFGEAGDYDGIRYVFQEMESVGVQPN 328

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           L     L+EA G+AG P  AR  F+ MI  G  P+++   ++I  YGK      AL L  
Sbjct: 329 LVVYNTLLEAMGKAGKPGFARGLFEEMIESGIVPNEKTLTAVIKIYGKARWSRDALELWQ 388

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQ-VSLCDMYARA 515
            ++++G+      Y  L++    + L+ EAE L   + +     P      ++ ++Y   
Sbjct: 389 RMKENGWPMDFILYNTLLNMCADVGLVEEAETLFRDMKQSVHCKPDSWSYTAMLNIYGSQ 448

Query: 516 GIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLK 575
           G   KA++    +     ++    F  +I  L       D  RV  +   +G    +RL 
Sbjct: 449 GDVDKAMKLFDEMCKLGVELNVMGFTCLIQCLGRAMEFDDLVRVFDISVERGIKPDDRLC 508

Query: 576 VALIS 580
             L+S
Sbjct: 509 GCLLS 513


>gi|255660846|gb|ACU25592.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
          Length = 418

 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 117/253 (46%), Gaps = 2/253 (0%)

Query: 218 LQPSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L+PS + +  L++  +R  +    FK+    +     Q +V  YS LI+   KE+ + +A
Sbjct: 167 LRPSVVSFNTLMNGYIRLGDLDQGFKLKN-AMHASGVQPDVYTYSVLINGLCKESKMNEA 225

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
             +  +M + G+VP+ VT T L+  + K G +D A E ++ + S  F PD   YN++I  
Sbjct: 226 NDLFNEMLDKGLVPNGVTFTTLIDGHCKNGKVDSAMETYKQMLSQCFLPDLITYNTLIYG 285

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
               G  K    L+D M   G++  +  Y  L+    + GD+  A ++   M  E  +  
Sbjct: 286 LCKKGDLKQAQDLLDEMRMKGLKPDKITYTTLIDGNCKEGDLDSAFELRETMVKESIRLD 345

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
             + T L+    Q G    A      M+ +G KPD+     +I  + KK  +  A  LL 
Sbjct: 346 DVAYTALISGLCQEGRATDAEKMLREMLSVGLKPDNGTYTMIINEFCKKEDVKTAAKLLK 405

Query: 457 ELEKDGFEPGPAT 469
           E+++ G  P   T
Sbjct: 406 EMQRQGHVPCVVT 418



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/298 (19%), Positives = 136/298 (45%), Gaps = 18/298 (6%)

Query: 214 WKELLQ---PSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQT--------NVRDYSK 262
           +KE+L+   P+ + + N+L          + K  E+ +++  F +        +V  ++ 
Sbjct: 124 YKEILECGYPASLYFFNIL-------MHRFCKEGEIWIAQSVFDSITKWGLRPSVVSFNT 176

Query: 263 LIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG 322
           L++ + +   L+   ++   M+ +G+ PD+ T +VL++   K   ++ A + F  +   G
Sbjct: 177 LMNGYIRLGDLDQGFKLKNAMHASGVQPDVYTYSVLINGLCKESKMNEANDLFNEMLDKG 236

Query: 323 FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAG 382
             P+   + ++I  +   G+    M     M++         Y  L+    + GD++ A 
Sbjct: 237 LVPNGVTFTTLIDGHCKNGKVDSAMETYKQMLSQCFLPDLITYNTLIYGLCKKGDLKQAQ 296

Query: 383 QITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAY 442
            + + MR++  +P   + T L++   + GD D A    + M++   + DD    ++I+  
Sbjct: 297 DLLDEMRMKGLKPDKITYTTLIDGNCKEGDLDSAFELRETMVKESIRLDDVAYTALISGL 356

Query: 443 GKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
            ++     A  +L E+   G +P   TYT++++   + + +  A +LL ++   G  P
Sbjct: 357 CQEGRATDAEKMLREMLSVGLKPDNGTYTMIINEFCKKEDVKTAAKLLKEMQRQGHVP 414



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 62/309 (20%), Positives = 131/309 (42%), Gaps = 6/309 (1%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGI-VPDIVTSTVLVHMYSKAGNLDRAK 312
           ++++  +S LI+A+ +   + DA    +   E+ + VP      VL H+  K        
Sbjct: 63  RSDIYVFSGLINAYLESGFVRDAIECFRLTREHKLRVPFDTCRKVLEHLM-KLKYFKLVW 121

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
             ++ +   G+      +N ++  +   G+  +  S+ D +   G+  S   +  L+  +
Sbjct: 122 GFYKEILECGYPASLYFFNILMHRFCKEGEIWIAQSVFDSITKWGLRPSVVSFNTLMNGY 181

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + GD+    ++ N M     QP + + ++L+    +    ++A   F+ M+  G  P+ 
Sbjct: 182 IRLGDLDQGFKLKNAMHASGVQPDVYTYSVLINGLCKESKMNEANDLFNEMLDKGLVPNG 241

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               ++I  + K   +D A+    ++    F P   TY  L+  L +   + +A+ LL +
Sbjct: 242 VTFTTLIDGHCKNGKVDSAMETYKQMLSQCFLPDLITYNTLIYGLCKKGDLKQAQDLLDE 301

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAG 550
           +   G  P      +L D   + G    A +    +   KE +  DD  +  +I+GL   
Sbjct: 302 MRMKGLKPDKITYTTLIDGNCKEGDLDSAFELRETMV--KESIRLDDVAYTALISGLCQE 359

Query: 551 GFLQDAQRV 559
           G   DA+++
Sbjct: 360 GRATDAEKM 368


>gi|255549482|ref|XP_002515794.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545122|gb|EEF46633.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 924

 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 114/239 (47%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
            V  ++ LI    ++  +E A  IL +M   G+ P+  T T ++H Y+  G+  +A E F
Sbjct: 620 TVHTFNALILGLVEKRQMEKAIEILDEMALAGVSPNEHTYTTIMHGYAALGDTGKAFEYF 679

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             LR  G Q D   Y +++ A   +G+ +  +++   M    I R+  +Y  L+  +A+ 
Sbjct: 680 TKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRNTFVYNILIDGWARR 739

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           GDV  A  +   M+    +P + + T  + A  +AGD  +A    + M   G KP+ +  
Sbjct: 740 GDVWEAADLMQQMKQGGVKPDIHTYTSFINACCKAGDMLRASKMMEEMETSGVKPNVKTY 799

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
            ++I  + + +L +KAL    E++  G +P  A Y  L+  L     + EA    G +S
Sbjct: 800 TTLIHGWARASLPEKALRCFQEMKLAGLKPDKAVYHCLMTALLSRATVTEAYVRPGILS 858



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 69/313 (22%), Positives = 134/313 (42%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
             N   Y  +I A+ +   ++ AE ++++M   GI   I     ++  Y+  GN ++   
Sbjct: 408 HMNAIIYGNMIYAYCQTCNMDQAEALVREMEGEGIDAPIDIYHTMMDGYTMVGNEEKCLT 467

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            FE L+  GF P    Y  +I  Y   G+    + +  MM ++GI+ + + Y  L+  F 
Sbjct: 468 VFERLKECGFAPSVVSYGCLINLYAKVGKISKALEVSKMMESAGIKHNMKTYSMLINGFL 527

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           +  D   A  I   +  +  +P +     ++ A+   G  D+A      M +  H+P  R
Sbjct: 528 KLKDWANAFAIFEDVVKDGLKPDVVLYNNIIRAFCGMGTMDRAICMVKEMQKERHRPTSR 587

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
               +I  + +   + +AL++   + + G  P   T+  L+  L   + + +A ++L ++
Sbjct: 588 TFMPIIHGFARAGEMKRALDVFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEM 647

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFL 553
           +  G +P      ++   YA  G   KA +    L  +  Q+    +E ++      G +
Sbjct: 648 ALAGVSPNEHTYTTIMHGYAALGDTGKAFEYFTKLRDEGLQLDVYTYEALLKACCKSGRM 707

Query: 554 QDAQRVHGLMEAQ 566
           Q A  V   M AQ
Sbjct: 708 QSALAVTKEMSAQ 720



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 77/361 (21%), Positives = 148/361 (40%), Gaps = 18/361 (4%)

Query: 238 QLYFKVAEL--------VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIV 289
            LY KV ++        ++     + N++ YS LI+   K     +A  I + + ++G+ 
Sbjct: 489 NLYAKVGKISKALEVSKMMESAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDVVKDGLK 548

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL 349
           PD+V    ++  +   G +DRA    + ++    +P  + +  +I  +  AG+ K  + +
Sbjct: 549 PDVVLYNNIIRAFCGMGTMDRAICMVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALDV 608

Query: 350 VDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409
            DMM  SG   +   + AL+    +   +  A +I + M +    P   + T ++  Y  
Sbjct: 609 FDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMALAGVSPNEHTYTTIMHGYAA 668

Query: 410 AGDPDQARSNFDYMIRL---GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG 466
            GD  +A   F+Y  +L   G + D     +++ A  K   +  AL +  E+        
Sbjct: 669 LGDTGKA---FEYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRN 725

Query: 467 PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALG 526
              Y +L+D   R   + EA  L+ ++ + G  P      S  +   +AG   +A + + 
Sbjct: 726 TFVYNILIDGWARRGDVWEAADLMQQMKQGGVKPDIHTYTSFINACCKAGDMLRASKMME 785

Query: 527 FLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGF----AASERLKVALISSQ 582
            +E    +     +  +I+G       + A R    M+  G     A    L  AL+S  
Sbjct: 786 EMETSGVKPNVKTYTTLIHGWARASLPEKALRCFQEMKLAGLKPDKAVYHCLMTALLSRA 845

Query: 583 T 583
           T
Sbjct: 846 T 846



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/322 (22%), Positives = 137/322 (42%), Gaps = 4/322 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI A+A    +E+A    +KM E G+   +VT +++V  ++K GN D A   F+  +
Sbjct: 344 YTSLIHAYAVGRDMEEALSCARKMKEEGVEMSLVTYSIIVGGFAKIGNADAADRWFKEAK 403

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
                 +  +Y +MI AY          +LV  M   GI+   +IY  ++  +   G+  
Sbjct: 404 DRHSHMNAIIYGNMIYAYCQTCNMDQAEALVREMEGEGIDAPIDIYHTMMDGYTMVGNEE 463

Query: 380 GAGQITNIMRIEE--FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
               +T   R++E  F P++ S   L+  Y + G   +A      M   G K + +  + 
Sbjct: 464 KC--LTVFERLKECGFAPSVVSYGCLINLYAKVGKISKALEVSKMMESAGIKHNMKTYSM 521

Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
           +I  + K      A  +  ++ KDG +P    Y  ++     +  ++ A  ++ ++ +  
Sbjct: 522 LINGFLKLKDWANAFAIFEDVVKDGLKPDVVLYNNIIRAFCGMGTMDRAICMVKEMQKER 581

Query: 498 EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQ 557
             P  +  + +   +ARAG  K+AL     +           F  +I GL+    ++ A 
Sbjct: 582 HRPTSRTFMPIIHGFARAGEMKRALDVFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAI 641

Query: 558 RVHGLMEAQGFAASERLKVALI 579
            +   M   G + +E     ++
Sbjct: 642 EILDEMALAGVSPNEHTYTTIM 663



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 65/326 (19%), Positives = 129/326 (39%), Gaps = 35/326 (10%)

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           ++V  Y++ G++ RA++ FES+R+ G +P   VY S+I AY      +  +S    M   
Sbjct: 311 LMVSYYARRGDMHRARQTFESMRARGIEPTSHVYTSLIHAYAVGRDMEEALSCARKMKEE 370

Query: 357 GIERSEEIYLALLRSFAQCGDVRGA-----------GQITNIMRIEEFQPTLESCTL--- 402
           G+E S   Y  ++  FA+ G+   A             +  I+         ++C +   
Sbjct: 371 GVEMSLVTYSIIVGGFAKIGNADAADRWFKEAKDRHSHMNAIIYGNMIYAYCQTCNMDQA 430

Query: 403 ---------------------LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441
                                +++ Y   G+ ++  + F+ +   G  P       +I  
Sbjct: 431 EALVREMEGEGIDAPIDIYHTMMDGYTMVGNEEKCLTVFERLKECGFAPSVVSYGCLINL 490

Query: 442 YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
           Y K   + KAL +   +E  G +    TY++L++   +L+    A  +   + + G  P 
Sbjct: 491 YAKVGKISKALEVSKMMESAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDVVKDGLKPD 550

Query: 502 FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHG 561
             +  ++   +   G   +A+  +  ++ ++ +     F  II+G    G ++ A  V  
Sbjct: 551 VVLYNNIIRAFCGMGTMDRAICMVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALDVFD 610

Query: 562 LMEAQGFAASERLKVALISSQTFNRQ 587
           +M   G   +     ALI      RQ
Sbjct: 611 MMRRSGCIPTVHTFNALILGLVEKRQ 636



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 93/236 (39%), Gaps = 43/236 (18%)

Query: 354 ITSGIER----SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409
           + S  ER    S   Y  ++  +A+ GD+  A Q    MR    +PT    T L+ AY  
Sbjct: 294 VVSAFERIKKPSRREYGLMVSYYARRGDMHRARQTFESMRARGIEPTSHVYTSLIHAYAV 353

Query: 410 AGDPDQARS----------------------------NFDYMIRLGHKPDDRCT------ 435
             D ++A S                            N D   R   +  DR +      
Sbjct: 354 GRDMEEALSCARKMKEEGVEMSLVTYSIIVGGFAKIGNADAADRWFKEAKDRHSHMNAII 413

Query: 436 -ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL--LGK 492
             +MI AY +   +D+A  L+ E+E +G +     Y  ++D  G   + NE + L    +
Sbjct: 414 YGNMIYAYCQTCNMDQAEALVREMEGEGIDAPIDIYHTMMD--GYTMVGNEEKCLTVFER 471

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLL 548
           + E G AP       L ++YA+ G   KAL+    +E+   +     +  +ING L
Sbjct: 472 LKECGFAPSVVSYGCLINLYAKVGKISKALEVSKMMESAGIKHNMKTYSMLINGFL 527



 Score = 46.6 bits (109), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 88/224 (39%), Gaps = 39/224 (17%)

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
           +P+     L+V  Y + GD  +AR  F+ M   G +P      S+I AY     +++AL+
Sbjct: 303 KPSRREYGLMVSYYARRGDMHRARQTFESMRARGIEPTSHVYTSLIHAYAVGRDMEEALS 362

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRL--------------------------------- 480
              +++++G E    TY+++V    ++                                 
Sbjct: 363 CARKMKEEGVEMSLVTYSIIVGGFAKIGNADAADRWFKEAKDRHSHMNAIIYGNMIYAYC 422

Query: 481 QLIN--EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
           Q  N  +AE L+ ++   G   P  I  ++ D Y   G E+K L    F   K+    P 
Sbjct: 423 QTCNMDQAEALVREMEGEGIDAPIDIYHTMMDGYTMVGNEEKCLTV--FERLKECGFAPS 480

Query: 539 --DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
              +  +IN     G +  A  V  +ME+ G   + +    LI+
Sbjct: 481 VVSYGCLINLYAKVGKISKALEVSKMMESAGIKHNMKTYSMLIN 524


>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
 gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
 gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 93/391 (23%), Positives = 169/391 (43%), Gaps = 17/391 (4%)

Query: 186 PITGKCKLITDKILSLEKEEDPSPLLAEWK-ELLQPSRIDWINLLDRL-REQNTQLYFKV 243
           P      ++ D++   +K ++   +  E   ++  P  I + +L+D L +       +KV
Sbjct: 410 PNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKV 469

Query: 244 AELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS 303
            E +L  +  +TN   Y+ LI         ED  +I K M      PD+      +    
Sbjct: 470 YEKMLDSDC-RTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMF 528

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363
           KAG  ++ +  FE +++  F PD + Y+ +I   + AG       L   M   G      
Sbjct: 529 KAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTR 588

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
            Y  ++  F +CG V  A Q+   M+ + F+PT+ +   +++   +    D+A   F+  
Sbjct: 589 AYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEA 648

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483
                + +    +S+I  +GK   +D+A  +L EL + G  P   T+  L+D L + + I
Sbjct: 649 KSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEI 708

Query: 484 NEAEQLLGKISELGEAP---PFKIQVS-LCDMYARAGIEKKALQALGFL-EAKKEQMGPD 538
           NEA      + EL   P    + I ++ LC +       +K  +A  F  E +K+ M P 
Sbjct: 709 NEALVCFQSMKELKCTPNQVTYGILINGLCKV-------RKFNKAFVFWQEMQKQGMKPS 761

Query: 539 --DFERIINGLLAGGFLQDAQRVHGLMEAQG 567
              +  +I+GL   G + +A  +    +A G
Sbjct: 762 TISYTTMISGLAKAGNIAEAGALFDRFKANG 792



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 89/363 (24%), Positives = 154/363 (42%), Gaps = 40/363 (11%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +   S   ++  Y+  ID+  K   ++ A +   ++  NG+ PD VT T ++ +  KA  
Sbjct: 229 MKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANR 288

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           LD A E FE L  +   P    YN+MIM Y +AG+     SL++     G   S   Y  
Sbjct: 289 LDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNC 348

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           +L    + G V  A ++   M+ ++  P L +  +L++   +AG  D A    D M + G
Sbjct: 349 ILTCLRKMGKVDEALKVFEEMK-KDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAG 407

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P+ R    M+    K   LD+A  +  E++     P   T+  L+D LG++  +++A 
Sbjct: 408 LFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAY 467

Query: 488 QLLGKI------------------------SELGE-----------APPFKIQVSLCDMY 512
           ++  K+                         E G            +P  ++  +  D  
Sbjct: 468 KVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCM 527

Query: 513 ARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAA 570
            +AG  +K  +A+ F E K  +  PD   +  +I+GL+  GF  +   +   M+ QG   
Sbjct: 528 FKAGEPEKG-RAM-FEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVL 585

Query: 571 SER 573
             R
Sbjct: 586 DTR 588



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 150/362 (41%), Gaps = 19/362 (5%)

Query: 219 QPSRIDWINLLDRLREQNTQL-YFK----VAELVLSEESFQTNVRDYSKLIDAHAKENCL 273
           QP  +  I +L RL++ N  + YF+      EL    ES       Y+ L+   A+    
Sbjct: 64  QPEFV--IGVLRRLKDVNRAIEYFRWYERRTELPHCPES-------YNSLLLVMARCRNF 114

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           +  ++IL +M+  G  P + T   +V    KA  L    +  + +R   F+P    Y ++
Sbjct: 115 DALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQMMRKFKFRPAFSAYTTL 174

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           I A+       + ++L   M   G E +  ++  L+R FA+ G V  A  + + M+    
Sbjct: 175 IGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSL 234

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
              +    + ++++G+ G  D A   F  +   G KPD+    SMI    K N LD+A+ 
Sbjct: 235 DADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVE 294

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
           +   LEK+   P    Y  ++   G     +EA  LL +    G  P       +     
Sbjct: 295 MFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLR 354

Query: 514 RAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAAS 571
           + G   K  +AL   E  K+   P+   +  +I+ L   G L  A  +   M+  G   +
Sbjct: 355 KMG---KVDEALKVFEEMKKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPN 411

Query: 572 ER 573
            R
Sbjct: 412 VR 413



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 66/297 (22%), Positives = 129/297 (43%), Gaps = 5/297 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  Y+ LID   +   L+ A  +   M + G+ P++ T  ++V    K+  LD A   F
Sbjct: 376 NLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMF 435

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E +      PD+  + S+I      G+      + + M+ S    +  +Y +L+++F   
Sbjct: 436 EEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNH 495

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G      +I   M  +   P L+     ++   +AG+P++ R+ F+ +      PD R  
Sbjct: 496 GRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSY 555

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
           + +I    K    ++   L   +++ G       Y +++D   +   +N+A QLL ++  
Sbjct: 556 SILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKT 615

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
            G  P      S+ D  A+  I++     + F EAK +++   +   +I   L  GF
Sbjct: 616 KGFEPTVVTYGSVIDGLAK--IDRLDEAYMLFEEAKSKRI---ELNVVIYSSLIDGF 667



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 103/248 (41%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F  + R YS LI    K     +   +   M E G V D     +++  + K G +++A 
Sbjct: 548 FVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAY 607

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           +  E +++ GF+P    Y S+I       +      L +   +  IE +  IY +L+  F
Sbjct: 608 QLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGF 667

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + G +  A  I   +  +   P L +   L++A  +A + ++A   F  M  L   P+ 
Sbjct: 668 GKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQ 727

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
                +I    K    +KA     E++K G +P   +YT ++  L +   I EA  L  +
Sbjct: 728 VTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDR 787

Query: 493 ISELGEAP 500
               G  P
Sbjct: 788 FKANGGVP 795



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 104/252 (41%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +  + F+  V  Y  +ID  AK + L++A  + ++     I  ++V  + L+  + K G 
Sbjct: 613 MKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGR 672

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D A    E L   G  P+   +NS++ A V A +    +     M       ++  Y  
Sbjct: 673 IDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGI 732

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    +      A      M+ +  +P+  S T ++    +AG+  +A + FD     G
Sbjct: 733 LINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANG 792

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD  C  +MI      N    A +L  E  + G      T  VL+D L +   + +A 
Sbjct: 793 GVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLPIHNKTCVVLLDTLHKNDCLEQAA 852

Query: 488 QLLGKISELGEA 499
            +   + E G+A
Sbjct: 853 IVGAVLRETGKA 864



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 6/175 (3%)

Query: 218 LQPSRIDWINLLDRL---REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           L P+   W +LLD L    E N  L   V    + E     N   Y  LI+   K     
Sbjct: 688 LTPNLYTWNSLLDALVKAEEINEAL---VCFQSMKELKCTPNQVTYGILINGLCKVRKFN 744

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
            A    ++M + G+ P  ++ T ++   +KAGN+  A   F+  +++G  PD   YN+MI
Sbjct: 745 KAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMI 804

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389
               N  +     SL +     G+    +  + LL +  +   +  A  +  ++R
Sbjct: 805 EGLSNGNRAMDAFSLFEETRRRGLPIHNKTCVVLLDTLHKNDCLEQAAIVGAVLR 859


>gi|168066429|ref|XP_001785140.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162663262|gb|EDQ50036.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 922

 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 84/371 (22%), Positives = 177/371 (47%), Gaps = 23/371 (6%)

Query: 215 KELLQPSRIDWINLLDRLREQNTQLYFKVAELV---LSEESFQTNVRDYSKLIDAHAKEN 271
           +E L+P++  +I++L   +   T +  +  E +   +++  ++++V   + LI+ + K  
Sbjct: 145 REGLKPNQNSFISILSACQ---TPIVLEFGEQIHSHITKAGYESDVNVSTALINMYCKCG 201

Query: 272 CLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYN 331
            LE A ++  +M E     ++V+ T ++  Y + G+   A   F+ L   G QP+K  + 
Sbjct: 202 SLELARKVFNEMRER----NVVSWTAMISGYVQHGDSKEAFVLFQKLIRSGTQPNKVSFA 257

Query: 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391
           S++ A  N    + G+ L   +  +G+E+   +  AL+  +A+CG +  A Q+ + +R  
Sbjct: 258 SILGACTNPNDLEQGLKLHAYIKQAGLEQEVLVGNALISMYARCGSLANARQVFDNLR-- 315

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
              P   S   ++  YG+ G  ++A   F  M + G +PD    AS++A    +  L++ 
Sbjct: 316 --SPNRVSWNAMIAGYGE-GFMEEAFRLFRDMQQKGFQPDRFTYASLLAICADRADLNRG 372

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
             L  ++ +  +E      T L+    +   + EA ++  ++ E   A  +   ++ C  
Sbjct: 373 KELHSQIVRTAWEADVTVATALISMYAKCGSLEEARKVFNQMPE-KNAVSWNAFIACC-- 429

Query: 512 YARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
             R G EK+A Q   F + +++ + PD   F  ++N   +    +  + +HG ++  G  
Sbjct: 430 -CRHGSEKEAFQV--FKQMRRDDVIPDHVTFITLLNSCTSPEDFERGRYIHGKIDQWGML 486

Query: 570 ASERLKVALIS 580
           ++  +  ALIS
Sbjct: 487 SNNLVANALIS 497



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 146/350 (41%), Gaps = 50/350 (14%)

Query: 274 EDAER---ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVY 330
           ED ER   I  K+++ G++ + + +  L+ MY + G L  A+E F  +R    + D   +
Sbjct: 468 EDFERGRYIHGKIDQWGMLSNNLVANALISMYGRCGKLADAREVFYRIR----RRDLGSW 523

Query: 331 NSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRI 390
           N+MI AYV  G       L     + G +  +  ++ +LR+ A   D+    +I  ++  
Sbjct: 524 NAMIAAYVQHGANGSAFDLFIKYKSEGGKGDKYTFINVLRAIANLEDLDAGRKIHGLVEK 583

Query: 391 EEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDK 450
              +  +   T L++ Y + G    A S F  +     + D  C  +M+AAY   +    
Sbjct: 584 AGLEKDIRILTTLIKMYSKCGSLRDAYSVFKNV----QEKDVVCWNAMLAAYNHSDHGQD 639

Query: 451 ALNLLLELEKDGFEPGPATYT-----------------------------------VLVD 475
           AL L  ++  +G  P  ATYT                                    +V 
Sbjct: 640 ALKLFQQMRLEGVNPDSATYTSVLNACARLGAIEHGKKFHTQLKEAAMETDTRHYACMVA 699

Query: 476 WLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQM 535
            LGR  L+ EAE+ + +IS   +A  ++  +  C ++   G+ + A++ L  L+ K  Q 
Sbjct: 700 ALGRASLLKEAEEFIEEISSESDALMWESLLVACRIHHNVGLAETAVEHL--LDVKA-QS 756

Query: 536 GPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS-QTF 584
            P   E+++N   A G  +D   +   M   G  A +   + + S   TF
Sbjct: 757 SPAVCEQLMNIYAAAGRWEDVSVIKATMREAGLLAPKSCTIEVNSEFHTF 806



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 145/330 (43%), Gaps = 29/330 (8%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           +L +   Q N+  Y++ +    +   L + +++   M      PDI  + +L+ MYSK G
Sbjct: 41  LLGKRGVQANLNFYARRLQECVQAKSLAEGKKVHDHMRSAQFEPDIYLNNMLISMYSKCG 100

Query: 307 NLDRAKEAFESLRSHGFQPDKKV--YNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
           +++ A   F+S+       DK V  +N+MI  Y   G+ +  + L   M   G++ ++  
Sbjct: 101 SIEDANNVFQSME------DKDVVSWNAMISGYALHGRGQEAVDLFYQMQREGLKPNQNS 154

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
           ++++L +      +    QI + +    ++  +   T L+  Y + G  + AR  F+ M 
Sbjct: 155 FISILSACQTPIVLEFGEQIHSHITKAGYESDVNVSTALINMYCKCGSLELARKVFNEM- 213

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
               + +     +MI+ Y +     +A  L  +L + G +P   ++  +   LG     N
Sbjct: 214 ---RERNVVSWTAMISGYVQHGDSKEAFVLFQKLIRSGTQPNKVSFASI---LGACTNPN 267

Query: 485 EAEQ---LLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFE 541
           + EQ   L   I + G      +  +L  MYAR G    A Q    L +      P+   
Sbjct: 268 DLEQGLKLHAYIKQAGLEQEVLVGNALISMYARCGSLANARQVFDNLRS------PNRVS 321

Query: 542 RIINGLLAG---GFLQDAQRVHGLMEAQGF 568
              N ++AG   GF+++A R+   M+ +GF
Sbjct: 322 --WNAMIAGYGEGFMEEAFRLFRDMQQKGF 349



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/167 (18%), Positives = 73/167 (43%), Gaps = 4/167 (2%)

Query: 350 VDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409
           V ++   G++ +   Y   L+   Q   +    ++ + MR  +F+P +    +L+  Y +
Sbjct: 39  VQLLGKRGVQANLNFYARRLQECVQAKSLAEGKKVHDHMRSAQFEPDIYLNNMLISMYSK 98

Query: 410 AGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPAT 469
            G  + A + F  M       D     +MI+ Y       +A++L  +++++G +P   +
Sbjct: 99  CGSIEDANNVFQSM----EDKDVVSWNAMISGYALHGRGQEAVDLFYQMQREGLKPNQNS 154

Query: 470 YTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
           +  ++       ++   EQ+   I++ G      +  +L +MY + G
Sbjct: 155 FISILSACQTPIVLEFGEQIHSHITKAGYESDVNVSTALINMYCKCG 201


>gi|55709857|gb|AAV58825.1| hypothetical protein [Arabidopsis thaliana]
          Length = 946

 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/335 (22%), Positives = 154/335 (45%), Gaps = 16/335 (4%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           + F  +   YSK+++     + +E A  + ++M   G+V D+ T T++V  + KAG +++
Sbjct: 436 QGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQ 495

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A++ F  +R  G  P+   Y ++I AY+ A +      L + M++ G   +   Y AL+ 
Sbjct: 496 ARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALID 555

Query: 371 SFAQCGDVRGAGQI-------TNIMRIEEF---------QPTLESCTLLVEAYGQAGDPD 414
              + G V  A QI        ++  ++ +         +P + +   L++ + ++   +
Sbjct: 556 GHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVE 615

Query: 415 QARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
           +AR   D M   G +P+     ++I    K   LD+A  +  E+ + GF     TY+ L+
Sbjct: 616 EARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLI 675

Query: 475 DWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ 534
           D   +++  + A ++L K+ E   AP   I   + D   + G   +A + +  +E K  Q
Sbjct: 676 DRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQ 735

Query: 535 MGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
                +  +I+G    G ++    +   M ++G A
Sbjct: 736 PNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVA 770



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 117/290 (40%), Gaps = 30/290 (10%)

Query: 244 AELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS 303
           A  ++  E+F  +   Y+KLI    + +  E+A   L +M     +P++VT + L+    
Sbjct: 248 ALTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCL 307

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363
               L R K     +   G  P  K++NS++ AY  +G       L+  M+  G      
Sbjct: 308 NKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYV 367

Query: 364 IYLALLRSFAQCGD------------------VRGAGQITNIMRIEEFQPTLESCTLLVE 405
           +Y  L+ S   CGD                  +  AG + N + +  F   L S      
Sbjct: 368 VYNILIGSI--CGDKDSLNFDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCS------ 419

Query: 406 AYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
               AG  ++A S    MI  G  PD    + ++      + ++ A  L  E+++ G   
Sbjct: 420 ----AGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVA 475

Query: 466 GPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
              TYT++VD   +  LI +A +   ++ E+G  P      +L   Y +A
Sbjct: 476 DVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKA 525



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 127/293 (43%), Gaps = 12/293 (4%)

Query: 236 NTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTS 295
           +  +YFK  +    + S + NV  Y  L+D   K + +E+A ++L  M+  G  P+ +  
Sbjct: 581 DVDMYFKQYD----DNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVY 636

Query: 296 TVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMIT 355
             L+    K G LD A+E    +  HGF      Y+S+I  Y    +  L   ++  M+ 
Sbjct: 637 DALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLE 696

Query: 356 SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ 415
           +    +  IY  ++    + G    A ++  +M  +  QP + + T +++ +G  G  + 
Sbjct: 697 NSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIET 756

Query: 416 ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
                + M   G  P+      +I    K   LD A NLL E+++  +    A Y  +++
Sbjct: 757 CLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIE 816

Query: 476 WLGRLQLINEAEQLLGKISELGE---APPFKIQVSLCDMYARAGIEKKALQAL 525
              +     E  + LG + E+G+   AP   +   L D   +A   + AL+ L
Sbjct: 817 GFNK-----EFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLL 864



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 74/358 (20%), Positives = 136/358 (37%), Gaps = 51/358 (14%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           L+ AE+   +M   G+V + +  +        AG  ++A      +   GF PD   Y+ 
Sbjct: 388 LDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSK 447

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           ++    NA + +L   L + M   G+      Y  ++ SF + G +  A +  N MR   
Sbjct: 448 VLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVG 507

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP---------DDRCTA------- 436
             P + + T L+ AY +A     A   F+ M+  G  P         D  C A       
Sbjct: 508 CTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKAC 567

Query: 437 -----------------------------------SMIAAYGKKNLLDKALNLLLELEKD 461
                                              +++  + K + +++A  LL  +  +
Sbjct: 568 QIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSME 627

Query: 462 GFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKA 521
           G EP    Y  L+D L ++  ++EA+++  ++SE G         SL D Y +   +  A
Sbjct: 628 GCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLA 687

Query: 522 LQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
            + L  +           +  +I+GL   G   +A ++  +ME +G   +     A+I
Sbjct: 688 SKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMI 745



 Score = 40.0 bits (92), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 45/209 (21%), Positives = 83/209 (39%), Gaps = 5/209 (2%)

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           VLV  + + G+   A E    L+   F+P +  YN +I A++ A +     SL+   ++ 
Sbjct: 164 VLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLD-SASLIHREMSL 222

Query: 357 GIERSEEIYL-ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ 415
              R +   L     S  + G  R A     ++  E F P     T L+    +A   ++
Sbjct: 223 ANLRMDGFTLRCFAYSLCKVGKWREA---LTLVETENFVPDTVFYTKLISGLCEASLFEE 279

Query: 416 ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
           A    + M      P+    ++++     K  L +   +L  +  +G  P P  +  LV 
Sbjct: 280 AMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVH 339

Query: 476 WLGRLQLINEAEQLLGKISELGEAPPFKI 504
                   + A +LL K+ + G  P + +
Sbjct: 340 AYCTSGDHSYAYKLLKKMVKCGHMPGYVV 368


>gi|302823876|ref|XP_002993586.1| hypothetical protein SELMODRAFT_137265 [Selaginella moellendorffii]
 gi|300138598|gb|EFJ05361.1| hypothetical protein SELMODRAFT_137265 [Selaginella moellendorffii]
          Length = 451

 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 123/253 (48%), Gaps = 38/253 (15%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           +L  E  + +   ++ ++DA+AK+    D E  LK+M+E+G+ PD+VT  VL+  Y +AG
Sbjct: 197 LLRREDLKPDAYTFNGIMDAYAKKGLYRDMEYKLKEMSEHGVRPDLVTFNVLIDAYGRAG 256

Query: 307 NLDRAKEAFESLRS-HGFQPDKKVYNSMIMAYVNAGQPK-LGMSLVDMMITSGIERSEEI 364
           +  + +  ++SL +  G +P    +NSM+ +Y   GQ + LG             + E++
Sbjct: 257 DFVKMERTYKSLVNLSGCKPSATTFNSMLASY---GQSRELG-------------KMEQV 300

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
            + +        D+ G G            P L +   L+ +YG+AG+ D  R  FD M+
Sbjct: 301 LVRM--------DMAGLG------------PDLTTFNTLMSSYGRAGELDTMRKCFDKMV 340

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
           R   KP       ++ AY +  L+D+A  L +   K   +P  ++Y +L    G  + ++
Sbjct: 341 RSPVKPQVSTLDVLLRAYAEHGLVDEAEALFINASKLDIKPAVSSYLILFKAYGEERQLD 400

Query: 485 EAEQLLGKISELG 497
           +   L+ K+ + G
Sbjct: 401 KMTVLMSKMEQSG 413



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 129/287 (44%), Gaps = 15/287 (5%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK--AGNLDRAKEAFES 317
           ++K+ID   K+  L  A  I  ++  +     ++ + ++ H+  K  A  LD A + F  
Sbjct: 101 HAKIIDTMGKQGQLRLASWIFSQLQLSSRTTPVLNAIIMAHLRCKNVARALDSALDHFGH 160

Query: 318 LRSHGFQ-PDKKVYNSMIMAYVNAGQPKLGMSL-VDMMITSGIERSEEIYLALLRSFAQC 375
           +++     P    YN +  A   AG      +L ++++    ++     +  ++ ++A+ 
Sbjct: 161 MKTSVHSCPSLATYNMLTRACAQAGLTDKAEALFLELLRREDLKPDAYTFNGIMDAYAKK 220

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL-GHKPDDRC 434
           G  R        M     +P L +  +L++AYG+AGD  +    +  ++ L G KP    
Sbjct: 221 GLYRDMEYKLKEMSEHGVRPDLVTFNVLIDAYGRAGDFVKMERTYKSLVNLSGCKPSATT 280

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
             SM+A+YG+   L K   +L+ ++  G  P   T+  L+   GR   ++   +   K+ 
Sbjct: 281 FNSMLASYGQSRELGKMEQVLVRMDMAGLGPDLTTFNTLMSSYGRAGELDTMRKCFDKMV 340

Query: 495 ELGEAPPFKIQVSLCDM----YARAGIEKKALQALGFLEAKKEQMGP 537
                 P K QVS  D+    YA  G+  +A +AL F+ A K  + P
Sbjct: 341 R----SPVKPQVSTLDVLLRAYAEHGLVDEA-EAL-FINASKLDIKP 381


>gi|255661198|gb|ACU25768.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
          Length = 426

 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 140/337 (41%), Gaps = 43/337 (12%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS LI    KE   +DA   L+KM ++ +  D+V  + L+ +  K  +  +A   F  L+
Sbjct: 12  YSTLITYFGKEGLFDDALSWLQKMEQDRVRGDLVLYSNLIELSRKLCDYSKAISIFSRLK 71

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  PD  VYNSMI  +  A   +   SL+  M T+G+      Y ALL  + +     
Sbjct: 72  RSGIMPDLVVYNSMINVFGKAKLFREARSLISEMRTAGVMPDTVSYTALLTMYVENKKFL 131

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  +   MR  +    L +C ++++ YGQ G   +A   F  M +LG +P+     +++
Sbjct: 132 EALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWSMRKLGIEPNVVSYNTLL 191

Query: 440 AAYGKKNLL-----------------------------------DKALNLLLELEKDGFE 464
             YG   L                                    +KA NL+ E++  G E
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKDIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIE 251

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQA 524
           P   TY+ ++   G++  ++ A  L  K+   G      +  ++   Y RAG+   A + 
Sbjct: 252 PNAITYSTIISIWGKVGKLDRAAILFEKLRSSGIEIDQVLYQTMIVAYERAGLVSHAKRL 311

Query: 525 LGFLEAKKEQMGPDDFER--IINGLLAGGFLQDAQRV 559
           L       E   PD+  R   I+ L   G +++A  V
Sbjct: 312 L------HELKTPDNIPRDTAIHILARAGRIEEATWV 342



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 133/285 (46%), Gaps = 29/285 (10%)

Query: 191 CKLITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKVAEL--V 247
           C ++ D    L   ++   L    ++L ++P+ + + N L R+   + +L+ +   L  +
Sbjct: 152 CNIMIDVYGQLGMAKEADKLFWSMRKLGIEPNVVSY-NTLLRVY-GDAELFGEAIHLFRL 209

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +  +  + NV  Y+ ++  + K    E A  ++++M   GI P+ +T + ++ ++ K G 
Sbjct: 210 MQRKDIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNAITYSTIISIWGKVGK 269

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMIT-SGIERSEEIYL 366
           LDRA   FE LRS G + D+ +Y +MI+AY  AG       L+  + T   I R   I++
Sbjct: 270 LDRAAILFEKLRSSGIEIDQVLYQTMIVAYERAGLVSHAKRLLHELKTPDNIPRDTAIHI 329

Query: 367 ALLRS---------FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
            L R+         F Q  D   AG++ +I   E           +++ + +        
Sbjct: 330 -LARAGRIEEATWVFRQAID---AGEVKDITVFER----------MIDLFSKYKKYSNIV 375

Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
             FD M  L +  D    A ++ AYGK +  +KA ++  E++ +G
Sbjct: 376 EVFDKMRGLEYFSDSYVIALVLNAYGKLHEFEKANDVYTEMQDEG 420



 Score = 47.4 bits (111), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 43/213 (20%), Positives = 87/213 (40%)

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
           R     PD+  Y+++I  +   G     +S +  M    +     +Y  L+    +  D 
Sbjct: 1   RDRALSPDRYTYSTLITYFGKEGLFDDALSWLQKMEQDRVRGDLVLYSNLIELSRKLCDY 60

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             A  I + ++     P L     ++  +G+A    +ARS    M   G  PD     ++
Sbjct: 61  SKAISIFSRLKRSGIMPDLVVYNSMINVFGKAKLFREARSLISEMRTAGVMPDTVSYTAL 120

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           +  Y +     +AL++  E+ +        T  +++D  G+L +  EA++L   + +LG 
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWSMRKLGI 180

Query: 499 APPFKIQVSLCDMYARAGIEKKALQALGFLEAK 531
            P      +L  +Y  A +  +A+     ++ K
Sbjct: 181 EPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 213


>gi|357139229|ref|XP_003571186.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Brachypodium distachyon]
          Length = 628

 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 103/412 (25%), Positives = 168/412 (40%), Gaps = 23/412 (5%)

Query: 170 EKIHE-RGEMILPEEPKPITGKCKLITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWIN 227
           EK+HE   EM       P T     +      L +++    LL E K+  +QP+   +  
Sbjct: 207 EKVHELYNEMSNEGHCFPDTVTYSALISAFCKLGRQDSAIRLLNEMKDNGMQPTAKIYTM 266

Query: 228 LLDRLREQNTQLYFKV----AELVLSEE----SFQTNVRDYSKLIDAHAKENCLEDAERI 279
           L+         L+FK+      L L EE      + +V  Y++LI    K    ++A   
Sbjct: 267 LI--------ALFFKLNNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAGRFDEAYNF 318

Query: 280 LKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA-YV 338
             +M   G  PD V    +++   KAG LD A + FE + +    P    YN++I A + 
Sbjct: 319 FHEMRREGCRPDTVVINNMINFLGKAGRLDDAVKLFEEMGTLQCIPSVVTYNTIIKALFE 378

Query: 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398
           +  +     S  + M  SGI  S   Y  L+  F +      A  +   M  + F P   
Sbjct: 379 SKSRISEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPA 438

Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
           +   L++A G+A   D A   F  +         R  A MI   GK   LD A+NL  E+
Sbjct: 439 AYCSLIDALGKAKRYDIAHELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVNLFDEM 498

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
            K G  P    Y  L+  L R  +++EA   + ++ E G  P       + +  A+ G  
Sbjct: 499 NKLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQEHGCIPDINSYNIILNGLAKTGGP 558

Query: 519 KKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
            +A++ L     K+  + PD   +  ++  +   G  ++A ++   M   GF
Sbjct: 559 HRAMEMLS--NMKQSAIKPDAVSYNTVLGAMSHAGLFEEAAKLMKEMNVLGF 608



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 88/387 (22%), Positives = 152/387 (39%), Gaps = 44/387 (11%)

Query: 234 EQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIV 293
           EQ  +++  + E+V +     T + + S +I        +  A  I  ++      P   
Sbjct: 133 EQYGEMWKMIQEMVRNPVCVVTPM-ELSDIIRMLGNAKMISKAVAIFYQIKVRKCQPTAQ 191

Query: 294 TSTVLVHMYSKAGNLDRAKEAFESLRSHGFQ-PDKKVYNSMIMAYVNAGQPKLGMSLVDM 352
               ++ M    G  ++  E +  + + G   PD   Y+++I A+   G+    + L++ 
Sbjct: 192 AYNSMIIMLMHEGQYEKVHELYNEMSNEGHCFPDTVTYSALISAFCKLGRQDSAIRLLNE 251

Query: 353 MITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGD 412
           M  +G++ + +IY  L+  F +  +V GA  +   MR +  +P + + T L+   G+AG 
Sbjct: 252 MKDNGMQPTAKIYTMLIALFFKLNNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAGR 311

Query: 413 PDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE--------------- 457
            D+A + F  M R G +PD     +MI   GK   LD A+ L  E               
Sbjct: 312 FDEAYNFFHEMRREGCRPDTVVINNMINFLGKAGRLDDAVKLFEEMGTLQCIPSVVTYNT 371

Query: 458 ---------------------LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
                                ++  G  P P TY++L+D   +     +A  LL ++ E 
Sbjct: 372 IIKALFESKSRISEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEK 431

Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD---FERIINGLLAGGFL 553
           G  P      SL D   +A   K+   A    +  KE  G      +  +I  L   G L
Sbjct: 432 GFPPCPAAYCSLIDALGKA---KRYDIAHELFQELKENCGSSSARVYAVMIKHLGKAGRL 488

Query: 554 QDAQRVHGLMEAQGFAASERLKVALIS 580
            DA  +   M   G   +     AL+S
Sbjct: 489 DDAVNLFDEMNKLGCTPNVYAYNALMS 515



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 102/223 (45%), Gaps = 4/223 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS LID   K N  E A  +L++M+E G  P       L+    KA   D A E F+ L+
Sbjct: 405 YSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDIAHELFQELK 464

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
            +      +VY  MI     AG+    ++L D M   G   +   Y AL+   A+ G + 
Sbjct: 465 ENCGSSSARVYAVMIKHLGKAGRLDDAVNLFDEMNKLGCTPNVYAYNALMSGLARAGMLD 524

Query: 380 GAGQITNIMRIEEFQ--PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
            A  +T + R++E    P + S  +++    + G P +A      M +   KPD     +
Sbjct: 525 EA--LTTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSAIKPDAVSYNT 582

Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
           ++ A     L ++A  L+ E+   GFE    TY+ +++ +G++
Sbjct: 583 VLGAMSHAGLFEEAAKLMKEMNVLGFEYDLITYSSILEAIGKV 625



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 97/230 (42%), Gaps = 7/230 (3%)

Query: 184 PKPITGKCKLITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFK 242
           P P T    ++ D      + E    LL E  E    P    + +L+D L +   + Y  
Sbjct: 400 PSPFTYS--ILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGK--AKRYDI 455

Query: 243 VAELV--LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
             EL   L E    ++ R Y+ +I    K   L+DA  +  +MN+ G  P++     L+ 
Sbjct: 456 AHELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVNLFDEMNKLGCTPNVYAYNALMS 515

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
             ++AG LD A      ++ HG  PD   YN ++      G P   M ++  M  S I+ 
Sbjct: 516 GLARAGMLDEALTTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSAIKP 575

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410
               Y  +L + +  G    A ++   M +  F+  L + + ++EA G+ 
Sbjct: 576 DAVSYNTVLGAMSHAGLFEEAAKLMKEMNVLGFEYDLITYSSILEAIGKV 625


>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
 gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
          Length = 485

 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 114/253 (45%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +SE     +V  Y  LI    +   +EDA  + +KM   G+ P+ V  T+L+  + K G+
Sbjct: 177 MSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGD 236

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            +   E    +R  G +PD   YN+++     A   K    +V  M ++G+      Y  
Sbjct: 237 AETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTT 296

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+  + +  ++  A +I   M  E       + T L+    +AG    A      M+  G
Sbjct: 297 LIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAG 356

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            +PD+     +I A+ +K  +   L LL E++  G +PG  TY V+++   +L  +  A+
Sbjct: 357 LEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNAD 416

Query: 488 QLLGKISELGEAP 500
            LL  +  +G +P
Sbjct: 417 MLLNAMINIGVSP 429



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 67/309 (21%), Positives = 125/309 (40%), Gaps = 35/309 (11%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +     +  V  ++ +I    +   L+ AE + ++M+E G+ PD+ T   L+    + G 
Sbjct: 142 MQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGR 201

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           ++ A+  FE +   G +P+  V+  +I A+   G  +  + L   M   G+      Y A
Sbjct: 202 IEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNA 261

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++    +  D++ A  I   MR                                     G
Sbjct: 262 IVNGLCRARDLKSASGIVVEMR-----------------------------------SAG 286

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            +PD     ++I  Y K+  LD A+ +   +  +G      TYT L+  L +     +AE
Sbjct: 287 LRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAE 346

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
           ++LG++ E G  P       + D + R G  K  L+ L  ++ K  + G   +  I+NG 
Sbjct: 347 RVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGF 406

Query: 548 LAGGFLQDA 556
              G +++A
Sbjct: 407 CKLGQMKNA 415



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 112/256 (43%), Gaps = 9/256 (3%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERIL---KKMNENGIVPDIVTSTVLVHMYSK 304
           +     + N   ++ LIDAH K+    DAE +L   ++M E G+ PD VT   +V+   +
Sbjct: 212 MCGRGMKPNAVVFTILIDAHCKKG---DAETMLELHREMRERGVRPDAVTYNAIVNGLCR 268

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
           A +L  A      +RS G +PD   Y ++I  Y    +  + M +   M+  G+   E  
Sbjct: 269 ARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVT 328

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
           Y AL+   ++ G    A ++   M     +P   + T++++A+ + GD          M 
Sbjct: 329 YTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQ 388

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW---LGRLQ 481
             G KP       ++  + K   +  A  LL  +   G  P   TY +L+D     G++ 
Sbjct: 389 NKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHCKHGKVT 448

Query: 482 LINEAEQLLGKISELG 497
            I E +   G + +LG
Sbjct: 449 DIEELKSAKGTVPDLG 464



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 127/295 (43%), Gaps = 14/295 (4%)

Query: 285 ENGIVPDIVTSTVL-------VHMYSKAGNLDRAKEAFES------LRSHGFQPDKKVYN 331
           E G++PD  T  +L       +   S  G + R   A E+      L   G  P+ K++N
Sbjct: 61  EEGLLPDACTLVLLALRRGIRLEPTSCTGLMSRFPTAPEACAFYLQLLDAGLPPEAKLFN 120

Query: 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391
            ++   V  G+     ++ D M + G+ R+   +  ++    + GD+ GA  +   M   
Sbjct: 121 VLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRRMSEA 180

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
              P + +   L++   + G  + AR  F+ M   G KP+      +I A+ KK   +  
Sbjct: 181 GVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETM 240

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
           L L  E+ + G  P   TY  +V+ L R + +  A  ++ ++   G  P      +L D 
Sbjct: 241 LELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDG 300

Query: 512 YARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHG-LMEA 565
           Y +      A++    + A+   +    +  +I+GL   G   DA+RV G +MEA
Sbjct: 301 YCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEA 355


>gi|18071401|gb|AAL58260.1|AC068923_2 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 627

 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 106/224 (47%), Gaps = 7/224 (3%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  YS +I+   KE  L+       KM +  I P++VT   ++    KA  +D+A E  
Sbjct: 87  DVVSYSTVINGFFKEGDLD-------KMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVL 139

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
            ++   G  PD   YNS++  + ++GQPK  +  +  M + G+E     Y +L+    + 
Sbjct: 140 TTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKN 199

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G    A +I + M     +P + +   L++ Y   G   +     D M+R G  P+    
Sbjct: 200 GRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVF 259

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
           + ++ AY K+  +++A+ +  ++ + G  P   TY  ++D L +
Sbjct: 260 SILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCK 303



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 130/285 (45%), Gaps = 11/285 (3%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENG--IVPDIVTSTVLVHMYSKAGNLDRAKE 313
           +V  Y+ L++    EN  ++A  +L  M ++G    PD+V+ + +++ + K G+LD+   
Sbjct: 50  DVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDK--- 106

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
               +      P+   YNS+I A   A      M ++  M+ SG+      Y +++  F 
Sbjct: 107 ----MLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFC 162

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
             G  + A      MR +  +P + +   L++   + G   +AR  FD M + G KPD  
Sbjct: 163 SSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDIT 222

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
              +++  Y  K  L +   LL  + ++G  P    +++LV    + + + EA  +  K+
Sbjct: 223 TYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKM 282

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
            + G  P      ++ D+  ++G  + A+  L F +   E + PD
Sbjct: 283 RQQGLNPNAVTYGTVIDVLCKSGRVEDAM--LYFEQMIDEGLRPD 325



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 110/241 (45%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ ++         ++A   LKKM  +G+ PD+VT   L+    K G    A++ F+S+ 
Sbjct: 154 YNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMT 213

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +PD   Y +++  Y   G       L+D+M+ +GI  +  ++  L+ ++A+   V 
Sbjct: 214 KRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVE 273

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  + + MR +   P   +   +++   ++G  + A   F+ MI  G +PD     S+I
Sbjct: 274 EAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLI 333

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            +    +  +KA  L LE+   G       +  ++D   +   + E+ +L   +  +G  
Sbjct: 334 HSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVK 393

Query: 500 P 500
           P
Sbjct: 394 P 394



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 120/278 (43%), Gaps = 1/278 (0%)

Query: 240 YFKVAEL-VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVL 298
           +FK  +L  + ++    NV  Y+ +I A  K   ++ A  +L  M ++G++PD +T   +
Sbjct: 98  FFKEGDLDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSI 157

Query: 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
           VH +  +G    A    + +RS G +PD   YNS++      G+      + D M   G+
Sbjct: 158 VHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGL 217

Query: 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418
           +     Y  LL+ +A  G +     + ++M      P     ++LV AY +    ++A  
Sbjct: 218 KPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAML 277

Query: 419 NFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLG 478
            F  M + G  P+     ++I    K   ++ A+    ++  +G  P    Y  L+  L 
Sbjct: 278 VFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLC 337

Query: 479 RLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
                 +AE+L  ++ + G         S+ D + + G
Sbjct: 338 IFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEG 375



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/214 (20%), Positives = 94/214 (43%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           ++P  + + +L+D L +       +     +++   + ++  Y  L+  +A +  L +  
Sbjct: 182 VEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMH 241

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
            +L  M  NGI P+    ++LV  Y+K   ++ A   F  +R  G  P+   Y ++I   
Sbjct: 242 GLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVL 301

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
             +G+ +  M   + MI  G+     +Y +L+ S         A ++   M       + 
Sbjct: 302 CKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLST 361

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
                +++++ + G   ++   FD M+R+G KPD
Sbjct: 362 IFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPD 395


>gi|357487731|ref|XP_003614153.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355515488|gb|AES97111.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 691

 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 139/314 (44%), Gaps = 7/314 (2%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           +  LI +   E  L +A  I  +M + GI  + +    L+  Y K+  ++ A+  F  ++
Sbjct: 322 FGALIKSFCVEGLLSEALIIQSEMEKKGISSNAIVYNTLMDAYCKSNRVEEAEGLFVEMK 381

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           + G +P    +N ++ AY    QPK+  SL+  M   G++ +   Y  L+ ++ +   + 
Sbjct: 382 AKGIKPTAVTFNILMYAYSRRMQPKIVESLLAEMKDFGLKPNANSYTCLISAYGRQKKMS 441

Query: 380 G-AGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             A      M+    +PT  S T ++ AY  +G  ++A + F+ MIR G KP      ++
Sbjct: 442 DMAADAFLKMKKVGIKPTSHSYTAMIHAYSVSGWHEKAYAVFENMIREGIKPSIETYTTL 501

Query: 439 IAAY---GKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
           + A+   G    L K   L++  +  G +    T+ +LVD   +  L  EA  ++ +  +
Sbjct: 502 LDAFRRVGDTETLMKIWKLMMSEKVKGTQ---VTFNILVDGFAKQGLFMEARDVISEFGK 558

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
           +G  P       L + YAR G++    Q L  +EA + +     +  +I   +     + 
Sbjct: 559 IGLQPTVMTYNMLINAYARGGLDSNIPQLLKEMEALRLRPDSITYSTVIYAFVRVRDFKR 618

Query: 556 AQRVHGLMEAQGFA 569
           A   H  M   G+ 
Sbjct: 619 AFFYHKEMVKSGYV 632



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/306 (21%), Positives = 138/306 (45%), Gaps = 2/306 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR-AKEA 314
           NVR Y+  I     +   +DA ++ + M  +G++PD VT ++++    K G+  + A + 
Sbjct: 247 NVRVYNAAISGLLYDGRYKDAWKVYESMETDGVLPDHVTCSIMIIGMRKLGHSAKDAWQF 306

Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
           FE +   G +  K+ + ++I ++   G     + +   M   GI  +  +Y  L+ ++ +
Sbjct: 307 FEKMNQKGVRWGKEAFGALIKSFCVEGLLSEALIIQSEMEKKGISSNAIVYNTLMDAYCK 366

Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
              V  A  +   M+ +  +PT  +  +L+ AY +   P    S    M   G KP+   
Sbjct: 367 SNRVEEAEGLFVEMKAKGIKPTAVTFNILMYAYSRRMQPKIVESLLAEMKDFGLKPNANS 426

Query: 435 TASMIAAYGK-KNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
              +I+AYG+ K + D A +  L+++K G +P   +YT ++          +A  +   +
Sbjct: 427 YTCLISAYGRQKKMSDMAADAFLKMKKVGIKPTSHSYTAMIHAYSVSGWHEKAYAVFENM 486

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFL 553
              G  P  +   +L D + R G  +  ++    + ++K +     F  +++G    G  
Sbjct: 487 IREGIKPSIETYTTLLDAFRRVGDTETLMKIWKLMMSEKVKGTQVTFNILVDGFAKQGLF 546

Query: 554 QDAQRV 559
            +A+ V
Sbjct: 547 MEARDV 552



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 117/270 (43%), Gaps = 36/270 (13%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK--- 304
           + ++   +N   Y+ L+DA+ K N +E+AE +  +M   GI P  VT  +L++ YS+   
Sbjct: 345 MEKKGISSNAIVYNTLMDAYCKSNRVEEAEGLFVEMKAKGIKPTAVTFNILMYAYSRRMQ 404

Query: 305 -------------------AGNL--------------DRAKEAFESLRSHGFQPDKKVYN 331
                              A +               D A +AF  ++  G +P    Y 
Sbjct: 405 PKIVESLLAEMKDFGLKPNANSYTCLISAYGRQKKMSDMAADAFLKMKKVGIKPTSHSYT 464

Query: 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391
           +MI AY  +G  +   ++ + MI  GI+ S E Y  LL +F + GD     +I  +M  E
Sbjct: 465 AMIHAYSVSGWHEKAYAVFENMIREGIKPSIETYTTLLDAFRRVGDTETLMKIWKLMMSE 524

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
           + + T  +  +LV+ + + G   +AR       ++G +P       +I AY +  L    
Sbjct: 525 KVKGTQVTFNILVDGFAKQGLFMEARDVISEFGKIGLQPTVMTYNMLINAYARGGLDSNI 584

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQ 481
             LL E+E     P   TY+ ++    R++
Sbjct: 585 PQLLKEMEALRLRPDSITYSTVIYAFVRVR 614



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 108/233 (46%), Gaps = 4/233 (1%)

Query: 242 KVAELVLSEE---SFQTNVRDYSKLIDAHAKENCLED-AERILKKMNENGIVPDIVTSTV 297
           K+ E +L+E      + N   Y+ LI A+ ++  + D A     KM + GI P   + T 
Sbjct: 406 KIVESLLAEMKDFGLKPNANSYTCLISAYGRQKKMSDMAADAFLKMKKVGIKPTSHSYTA 465

Query: 298 LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG 357
           ++H YS +G  ++A   FE++   G +P  + Y +++ A+   G  +  M +  +M++  
Sbjct: 466 MIHAYSVSGWHEKAYAVFENMIREGIKPSIETYTTLLDAFRRVGDTETLMKIWKLMMSEK 525

Query: 358 IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
           ++ ++  +  L+  FA+ G    A  + +       QPT+ +  +L+ AY + G      
Sbjct: 526 VKGTQVTFNILVDGFAKQGLFMEARDVISEFGKIGLQPTVMTYNMLINAYARGGLDSNIP 585

Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATY 470
                M  L  +PD    +++I A+ +     +A     E+ K G+    ++Y
Sbjct: 586 QLLKEMEALRLRPDSITYSTVIYAFVRVRDFKRAFFYHKEMVKSGYVMDISSY 638



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 77/147 (52%), Gaps = 8/147 (5%)

Query: 215 KELLQPSRIDWINLLDRLREQ-NTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCL 273
           +E ++PS   +  LLD  R   +T+   K+ +L++SE+   T V  ++ L+D  AK+   
Sbjct: 488 REGIKPSIETYTTLLDAFRRVGDTETLMKIWKLMMSEKVKGTQV-TFNILVDGFAKQGLF 546

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAG---NLDRAKEAFESLRSHGFQPDKKVY 330
            +A  ++ +  + G+ P ++T  +L++ Y++ G   N+ +  +  E+LR    +PD   Y
Sbjct: 547 MEARDVISEFGKIGLQPTVMTYNMLINAYARGGLDSNIPQLLKEMEALR---LRPDSITY 603

Query: 331 NSMIMAYVNAGQPKLGMSLVDMMITSG 357
           +++I A+V     K        M+ SG
Sbjct: 604 STVIYAFVRVRDFKRAFFYHKEMVKSG 630


>gi|242086476|ref|XP_002443663.1| hypothetical protein SORBIDRAFT_08g023090 [Sorghum bicolor]
 gi|241944356|gb|EES17501.1| hypothetical protein SORBIDRAFT_08g023090 [Sorghum bicolor]
          Length = 853

 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 124/265 (46%), Gaps = 4/265 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +S    +  V  Y+++I A+ + N L++A ++ ++M E G  PD VT   L+ +++KAG 
Sbjct: 386 MSRAHCKPTVVTYNRIIHAYGRANYLKEAVKVFEEMQEAGYEPDRVTYCTLIDIHAKAGY 445

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           LD A + +  ++  G  PD   Y++M+      GQ      L   MI +G   +   Y  
Sbjct: 446 LDIAMDLYGRMQEVGLSPDTFTYSAMVNCLGKGGQLAAAYKLFCEMIENGCTPNLVTYNI 505

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++   A+  +     ++   M++  F+P   + ++++E  G  G  D+A + F  M R  
Sbjct: 506 MIALQAKARNYENVVKLYKDMQVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEM-RRD 564

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD+     ++  +GK   +DKAL     + +DG +P   T   L+    ++    +A 
Sbjct: 565 WAPDEPVYGLLVDLWGKAGNVDKALGWYQAMLQDGLQPNVPTCNSLLSAFLKMNRFQDAY 624

Query: 488 QLLGKISELGEAPP---FKIQVSLC 509
            +L  +   G  P    + + +S C
Sbjct: 625 IVLQNMLAQGLVPSVQTYTLLLSCC 649



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 75/337 (22%), Positives = 138/337 (40%), Gaps = 42/337 (12%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           +  F+ +   Y+ +I    +       +++L +M+     P +VT   ++H Y +A  L 
Sbjct: 353 QPGFKHDGHTYTTMIGILGQARQFGVLKKLLDEMSRAHCKPTVVTYNRIIHAYGRANYLK 412

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A + FE ++  G++PD+  Y ++I  +  AG   + M L   M   G+      Y A++
Sbjct: 413 EAVKVFEEMQEAGYEPDRVTYCTLIDIHAKAGYLDIAMDLYGRMQEVGLSPDTFTYSAMV 472

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               + G +  A ++                                   F  MI  G  
Sbjct: 473 NCLGKGGQLAAAYKL-----------------------------------FCEMIENGCT 497

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           P+      MIA   K    +  + L  +++  GF P   TY+++++ LG    ++EAE +
Sbjct: 498 PNLVTYNIMIALQAKARNYENVVKLYKDMQVAGFRPDKITYSIVMEVLGHCGHLDEAEAV 557

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK-KEQMGPD--DFERIING 546
             ++     AP   +   L D++ +AG   K   ALG+ +A  ++ + P+      +++ 
Sbjct: 558 FIEMRR-DWAPDEPVYGLLVDLWGKAGNVDK---ALGWYQAMLQDGLQPNVPTCNSLLSA 613

Query: 547 LLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQT 583
            L     QDA  V   M AQG   S +    L+S  T
Sbjct: 614 FLKMNRFQDAYIVLQNMLAQGLVPSVQTYTLLLSCCT 650



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/231 (19%), Positives = 96/231 (41%), Gaps = 44/231 (19%)

Query: 219 QPSRIDWINLLDRLREQN-----TQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCL 273
           +P R+ +  L+D   +         LY ++ E+ LS ++F      YS +++   K   L
Sbjct: 427 EPDRVTYCTLIDIHAKAGYLDIAMDLYGRMQEVGLSPDTF-----TYSAMVNCLGKGGQL 481

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK------ 327
             A ++  +M ENG  P++VT  +++ + +KA N +   + ++ ++  GF+PDK      
Sbjct: 482 AAAYKLFCEMIENGCTPNLVTYNIMIALQAKARNYENVVKLYKDMQVAGFRPDKITYSIV 541

Query: 328 ----------------------------KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
                                        VY  ++  +  AG     +     M+  G++
Sbjct: 542 MEVLGHCGHLDEAEAVFIEMRRDWAPDEPVYGLLVDLWGKAGNVDKALGWYQAMLQDGLQ 601

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410
            +     +LL +F +    + A  +   M  +   P++++ TLL+    +A
Sbjct: 602 PNVPTCNSLLSAFLKMNRFQDAYIVLQNMLAQGLVPSVQTYTLLLSCCTEA 652


>gi|449444222|ref|XP_004139874.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492651|ref|XP_004159061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 588

 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 128/283 (45%), Gaps = 35/283 (12%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + ++  Q NV  +S LID   KE  +  A+++L+ M + GIVP++ T T L+  +   G+
Sbjct: 263 MVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQIGIVPNLFTYTSLIKGFCLVGD 322

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L+ AKE F S+ S G++PD   YN +I  Y    + +  M L + M+  G+    +    
Sbjct: 323 LNSAKELFVSMPSKGYEPDVISYNMLINGYCKTLKVEEAMKLFNEMLHVGMWPDVKTSGV 382

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL------------------------ 403
           LL++    G V  A ++  +++       L  C +                         
Sbjct: 383 LLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDGLCKNGYIFEAMKLFNELESYN 442

Query: 404 ----VEAYG-------QAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
               +E +G       +AG  + A   F+ +   G +PD    +SMI  + KK  +DKA 
Sbjct: 443 MKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPDAMAYSSMIHGFCKKGQVDKAN 502

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            L  ++E++G  P   TY++L+        + +  QLL ++ E
Sbjct: 503 ILFQKMEENGCSPDLITYSILMRGFYESNKLEKVVQLLHRMIE 545



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 136/318 (42%), Gaps = 17/318 (5%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  YS +ID   K    E+A  +  +M + G+ P++VT +VL+ M  K G + +AK+  
Sbjct: 236 NVISYSIIIDGLCKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLL 295

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E +   G  P+   Y S+I  +   G       L   M + G E     Y  L+  + + 
Sbjct: 296 EMMIQIGIVPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKT 355

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
             V  A ++ N M      P +++  +L++A   AG  D A+  F  +I+    P D C 
Sbjct: 356 LKVEEAMKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFR-VIKPYAMPKDLCI 414

Query: 436 ASM-IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
             + +    K   + +A+ L  ELE    +    T+  L+D L +   +  A +L  K+ 
Sbjct: 415 CCIFLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLY 474

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG--PDDFERIINGLLAGGF 552
           E G  P      S+   + + G   KA      L  K E+ G  PD    I   +L  GF
Sbjct: 475 EEGIQPDAMAYSSMIHGFCKKGQVDKA----NILFQKMEENGCSPD---LITYSILMRGF 527

Query: 553 LQD------AQRVHGLME 564
            +        Q +H ++E
Sbjct: 528 YESNKLEKVVQLLHRMIE 545



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 81/366 (22%), Positives = 156/366 (42%), Gaps = 14/366 (3%)

Query: 197 KILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTN 256
           ++ SL K+   + L   W +LL  + +  IN L  +   N  L    A   +    +  +
Sbjct: 109 QVFSLYKQMHLAGL---WPDLLTLNIL--INCLCNVNRINEGL---AAMAGIMRRGYIPD 160

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA----K 312
           V  ++ LI     E+ + +A ++  +M + G  P++VT   L+      GN++ A    +
Sbjct: 161 VVTFTTLIKGLCVEHRIIEATKLFMRMQKLGCTPNVVTYGTLIKGLCALGNINIALKWHQ 220

Query: 313 EAFESLRSHGF--QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           E       + F  +P+   Y+ +I      G  +  + L + M+  G++ +   +  L+ 
Sbjct: 221 EMLNDTSPYVFNCRPNVISYSIIIDGLCKVGNWEEAICLFNEMVDQGVQPNVVTFSVLID 280

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
              + G V  A ++  +M      P L + T L++ +   GD + A+  F  M   G++P
Sbjct: 281 MLCKEGQVIKAKKLLEMMIQIGIVPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEP 340

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           D      +I  Y K   +++A+ L  E+   G  P   T  VL+  L     +++A++L 
Sbjct: 341 DVISYNMLINGYCKTLKVEEAMKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELF 400

Query: 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAG 550
             I          I     D   + G   +A++    LE+   ++  + F  +I+GL   
Sbjct: 401 RVIKPYAMPKDLCICCIFLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKA 460

Query: 551 GFLQDA 556
           G L+ A
Sbjct: 461 GKLETA 466



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 61/280 (21%), Positives = 121/280 (43%), Gaps = 4/280 (1%)

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL 349
           P++++ ++++    K GN + A   F  +   G QP+   ++ +I      GQ      L
Sbjct: 235 PNVISYSIIIDGLCKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKL 294

Query: 350 VDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409
           ++MMI  GI  +   Y +L++ F   GD+  A ++   M  + ++P + S  +L+  Y +
Sbjct: 295 LEMMIQIGIVPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCK 354

Query: 410 AGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPAT 469
               ++A   F+ M+ +G  PD + +  ++ A      +D A  L   ++          
Sbjct: 355 TLKVEEAMKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCI 414

Query: 470 YTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLE 529
             + +D L +   I EA +L  ++         +    L D   +AG  + A +   F +
Sbjct: 415 CCIFLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWEL--FEK 472

Query: 530 AKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQG 567
             +E + PD   +  +I+G    G +  A  +   ME  G
Sbjct: 473 LYEEGIQPDAMAYSSMIHGFCKKGQVDKANILFQKMEENG 512



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/251 (19%), Positives = 105/251 (41%), Gaps = 6/251 (2%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           ++  +++L+   AK         + K+M+  G+ PD++T  +L++       ++    A 
Sbjct: 90  SIFSFNRLLAGLAKIEHYSQVFSLYKQMHLAGLWPDLLTLNILINCLCNVNRINEGLAAM 149

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G+ PD   + ++I       +      L   M   G   +   Y  L++     
Sbjct: 150 AGIMRRGYIPDVVTFTTLIKGLCVEHRIIEATKLFMRMQKLGCTPNVVTYGTLIKGLCAL 209

Query: 376 GDVRGAGQITNIM------RIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
           G++  A +    M       +   +P + S +++++   + G+ ++A   F+ M+  G +
Sbjct: 210 GNINIALKWHQEMLNDTSPYVFNCRPNVISYSIIIDGLCKVGNWEEAICLFNEMVDQGVQ 269

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           P+    + +I    K+  + KA  LL  + + G  P   TYT L+     +  +N A++L
Sbjct: 270 PNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQIGIVPNLFTYTSLIKGFCLVGDLNSAKEL 329

Query: 490 LGKISELGEAP 500
              +   G  P
Sbjct: 330 FVSMPSKGYEP 340



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 58/118 (49%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L   + + ++  +  LID   K   LE A  + +K+ E GI PD +  + ++H + K G 
Sbjct: 438 LESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPDAMAYSSMIHGFCKKGQ 497

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
           +D+A   F+ +  +G  PD   Y+ ++  +  + + +  + L+  MI   +   + IY
Sbjct: 498 VDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEKVVQLLHRMIEKDVWPDDGIY 555


>gi|326533642|dbj|BAK05352.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/356 (21%), Positives = 155/356 (43%), Gaps = 36/356 (10%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           ++ +  + +V  Y+ +IDA  K   ++ AE +L++M  +G  PD VT + ++H Y+  G 
Sbjct: 291 MTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQPDTVTYSCMIHGYATLGR 350

Query: 308 L--------------------------------DRAKEA---FESLRSHGFQPDKKVYNS 332
           L                                 R+KEA   F+S+ + G +PD   Y +
Sbjct: 351 LKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCT 410

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           ++  Y + G     + L + M ++GI  +  ++  L+ ++A+ G V  A  I   M+ + 
Sbjct: 411 LLHGYASEGCFADMIGLFNSMKSNGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQG 470

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P + + + ++  + + G    A   F+ M+  G +P+    +S+I  +     L KA 
Sbjct: 471 VSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGFCMHGGLVKAK 530

Query: 453 NLLLELEKDGF-EPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
            L+ E+   G   P    ++ +++ L +   + +A  +    +++GE P      SL D 
Sbjct: 531 ELVSEMINKGIPRPDIVFFSSVINSLCKDGRVMDAHDIFDLATDIGERPGVITFNSLIDG 590

Query: 512 YARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
           Y   G   KA + L  +E    +     +  +++G    G + D   +   M+ +G
Sbjct: 591 YCLVGKMDKAFKILDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREMQRKG 646



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/312 (20%), Positives = 129/312 (41%), Gaps = 2/312 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENG--IVPDIVTSTVLVHMYSKA 305
           +SE     N   YS ++ A    +  + A  +L+ M + G    PD+V  + ++H +   
Sbjct: 219 MSELGCVPNAVSYSIVLKALCDNSMSQRALDLLQMMAKQGGACSPDVVAYSTVIHGFFNE 278

Query: 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
           G   +A   F  +   G +PD   YN +I A   A        ++  M T G +     Y
Sbjct: 279 GETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQPDTVTY 338

Query: 366 LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
             ++  +A  G ++ A ++   M+     P + +C   + +  + G   +A   FD M  
Sbjct: 339 SCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTA 398

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
            GHKPD     +++  Y  +      + L   ++ +G       +T+L+    +  ++++
Sbjct: 399 KGHKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAANCHVFTILIHAYAKRGMVDD 458

Query: 486 AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIIN 545
           A  +  ++ + G +P      ++   ++R G    A++    + A+  Q     +  II 
Sbjct: 459 AMLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQ 518

Query: 546 GLLAGGFLQDAQ 557
           G    G L  A+
Sbjct: 519 GFCMHGGLVKAK 530



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 102/248 (41%), Gaps = 1/248 (0%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIV-PDIVTSTVLVHMYSKAGNLDRAK 312
           Q N   YS +I        L  A+ ++ +M   GI  PDIV  + +++   K G +  A 
Sbjct: 507 QPNTAVYSSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFSSVINSLCKDGRVMDAH 566

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           + F+     G +P    +NS+I  Y   G+      ++D M   G+E     Y  LL  +
Sbjct: 567 DIFDLATDIGERPGVITFNSLIDGYCLVGKMDKAFKILDAMEVVGVEPDIVTYNTLLDGY 626

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + G +     +   M+ +  +P   +  +++    +AG    AR  F  MI  G     
Sbjct: 627 FKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTV 686

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
                ++    + N  D+A+ L  +L     +        +++ + ++Q   EA++L   
Sbjct: 687 SIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKELFAT 746

Query: 493 ISELGEAP 500
           IS  G  P
Sbjct: 747 ISASGLLP 754



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 65/299 (21%), Positives = 125/299 (41%), Gaps = 9/299 (3%)

Query: 289 VPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI--MAYVNAGQPKLG 346
           VP   T  +L+    +A   D     F  +   G + D+   N+++  + Y N  +  + 
Sbjct: 154 VPTFCTYNILMDCCCRARRPDLGLALFGCILRTGLKMDQITANTLLKCLCYANRTEEAVN 213

Query: 347 MSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE--EFQPTLESCTLLV 404
           + L+  M   G   +   Y  +L++       + A  +  +M  +     P + + + ++
Sbjct: 214 V-LLHRMSELGCVPNAVSYSIVLKALCDNSMSQRALDLLQMMAKQGGACSPDVVAYSTVI 272

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
             +   G+  +A S F  M R G KPD      +I A  K   +DKA  +L ++  DG +
Sbjct: 273 HGFFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQ 332

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQA 524
           P   TY+ ++     L  + EA ++  ++ + G  P      S      + G  K+A + 
Sbjct: 333 PDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEF 392

Query: 525 LGFLEAKKEQMGPDDFE--RIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
              + AK  +  PD F    +++G  + G   D   +   M++ G AA+  +   LI +
Sbjct: 393 FDSMTAKGHK--PDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAANCHVFTILIHA 449



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 104/249 (41%), Gaps = 16/249 (6%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           +S +I++  K+  + DA  I     + G  P ++T   L+  Y   G +D+A +  +++ 
Sbjct: 549 FSSVINSLCKDGRVMDAHDIFDLATDIGERPGVITFNSLIDGYCLVGKMDKAFKILDAME 608

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G +PD   YN+++  Y   G+   G++L   M   G++ +   Y  +L    + G   
Sbjct: 609 VVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTV 668

Query: 380 GAGQITNIMRIEEFQPTLES-CTLLVEAYG-------QAGDPDQARSNFDYMIRLGHKPD 431
            A +        +F   +ES  T+ V  YG       +    D+A   F  +  +  K  
Sbjct: 669 AARK--------KFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFS 720

Query: 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
                +MI A  K    ++A  L   +   G  P  +TY V++  L +   + +A  +  
Sbjct: 721 ITILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINLLKDGGVEDANNMFS 780

Query: 492 KISELGEAP 500
            + + G  P
Sbjct: 781 SMEKSGIVP 789



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 109/266 (40%), Gaps = 12/266 (4%)

Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           V  ++ LID +     ++ A +IL  M   G+ PDIVT   L+  Y K G ++     F 
Sbjct: 581 VITFNSLIDGYCLVGKMDKAFKILDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFR 640

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ-- 374
            ++  G +P+   Y  M+     AG+          MI SG   +  IY  +L    +  
Sbjct: 641 EMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNN 700

Query: 375 CGD-VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           C D      Q    M + +F  T+ +   ++ A  +    ++A+  F  +   G  P++ 
Sbjct: 701 CADEAIILFQKLGTMNV-KFSITILN--TMINAMYKVQRKEEAKELFATISASGLLPNES 757

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
               MI    K   ++ A N+   +EK G  PG      ++  L     I +A   L K+
Sbjct: 758 TYGVMIINLLKDGGVEDANNMFSSMEKSGIVPGSRLLNRIIRMLLEKGEIAKAGNYLSKV 817

Query: 494 SE---LGEAPPFKIQVSLCDMYARAG 516
                L EA    + +SL   ++R G
Sbjct: 818 DGKRILLEASTTSLMLSL---FSRKG 840



 Score = 40.0 bits (92), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 27/134 (20%), Positives = 56/134 (41%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E      V  Y  ++    + NC ++A  + +K+    +   I     +++   K    +
Sbjct: 679 ESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKE 738

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            AKE F ++ + G  P++  Y  MI+  +  G  +   ++   M  SGI     +   ++
Sbjct: 739 EAKELFATISASGLLPNESTYGVMIINLLKDGGVEDANNMFSSMEKSGIVPGSRLLNRII 798

Query: 370 RSFAQCGDVRGAGQ 383
           R   + G++  AG 
Sbjct: 799 RMLLEKGEIAKAGN 812


>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 643

 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 132/308 (42%), Gaps = 8/308 (2%)

Query: 247 VLSEESF----QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMY 302
           VL  E F    ++ V  ++ +I+   KE  L+ A+  +  M   G+ P++VT   ++H Y
Sbjct: 222 VLYAEMFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGY 281

Query: 303 SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE 362
              G ++ A+   + +++ G +PD   Y S+I      G+ +    +++ M   G+  + 
Sbjct: 282 CSRGRVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTA 341

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
             Y  L+  +   GD+  A    + M      PT+ +  LL+ A    G  D+A      
Sbjct: 342 VTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKD 401

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
           M   G  PD      +I  Y +     KA NL  E+   G +P   TYT L+  L +   
Sbjct: 402 MGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNR 461

Query: 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFER 542
           +  A+ L  KI   G +P   +  +L D +   G   +A   L   E  K  + PD  E 
Sbjct: 462 MKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLK--EMDKRNIVPD--EV 517

Query: 543 IINGLLAG 550
             N L+ G
Sbjct: 518 TYNTLMQG 525



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 139/315 (44%), Gaps = 17/315 (5%)

Query: 203 KEEDPSPLLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKVAELV--------LSEESF 253
           K E+ S +L + KE+ L P+ + +  L+D         Y    +LV        +   + 
Sbjct: 321 KLEEASGILEKMKEIGLLPTAVTYNTLIDG--------YCNKGDLVKAFGYRDEMVRRAI 372

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
              V  Y+ LI A   E  +++A+ ++K M ++GIVPD +T  +L++ Y + GN  +A  
Sbjct: 373 LPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFN 432

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
             + + S G QP    Y S+I       + K    L + +I  G      ++ AL+    
Sbjct: 433 LHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHC 492

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
             G++  A  +   M      P   +   L++   + G  ++AR     M R G +PD  
Sbjct: 493 ANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHI 552

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
              ++I+ Y K+  ++ A  +  E+   GF P   TY  L+  L + Q  + AE+LL ++
Sbjct: 553 SYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEM 612

Query: 494 SELGEAPPFKIQVSL 508
              G  P      SL
Sbjct: 613 VSKGITPDDSTYFSL 627



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 112/257 (43%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  LI    K   LE+A  IL+KM E G++P  VT   L+  Y   G+L +A    + + 
Sbjct: 309 YGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAFGYRDEMV 368

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
                P    YN +I A    G+      ++  M  SGI      Y  L+  + +CG+ +
Sbjct: 369 RRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAK 428

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  + + M  +  QPTL + T L+    +      A   F+ +IR G  PD     ++I
Sbjct: 429 KAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALI 488

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             +     LD+A  LL E++K    P   TY  L+    R   + EA +LL ++   G  
Sbjct: 489 DGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIR 548

Query: 500 PPFKIQVSLCDMYARAG 516
           P      +L   Y++ G
Sbjct: 549 PDHISYNTLISGYSKRG 565



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 103/228 (45%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI+ + +    + A  +  +M   GI P +VT T L+++ SK   +  A + FE + 
Sbjct: 414 YNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKII 473

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  PD  ++N++I  +   G      +L+  M    I   E  Y  L++   + G V 
Sbjct: 474 REGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVE 533

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A ++   M+    +P   S   L+  Y + GD + A +  D M+ +G  P      ++I
Sbjct: 534 EARELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNALI 593

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
               K    D A  LL E+   G  P  +TY  L++ +G++   +EA 
Sbjct: 594 QGLCKNQQGDLAEELLKEMVSKGITPDDSTYFSLIEGIGKVDDSSEAS 641



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 132/312 (42%), Gaps = 4/312 (1%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++ E+     +  ++ ++    K N  E    +  +M    I   + T  +++++  K G
Sbjct: 191 MMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAEMFRLKIKSTVYTFNIMINVLCKEG 250

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            L +AK+   S+ + G +P+   YN++I  Y + G+ +    ++D+M   G+E     Y 
Sbjct: 251 KLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVEPDSYTYG 310

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           +L+    + G +  A  I   M+     PT  +   L++ Y   GD  +A    D M+R 
Sbjct: 311 SLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRR 370

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
              P       +I A   +  +D+A  ++ ++   G  P   TY +L++   R     +A
Sbjct: 371 AILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKA 430

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERII 544
             L  ++   G  P      SL  + ++    K A     F +  +E   PD   F  +I
Sbjct: 431 FNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDL--FEKIIREGASPDLIMFNALI 488

Query: 545 NGLLAGGFLQDA 556
           +G  A G L  A
Sbjct: 489 DGHCANGNLDRA 500



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 101/228 (44%), Gaps = 2/228 (0%)

Query: 218 LQPSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           + P  I +  L++   R  N +  F + + ++S+   Q  +  Y+ LI   +K N ++ A
Sbjct: 407 IVPDSITYNILINGYCRCGNAKKAFNLHDEMISK-GIQPTLVTYTSLIYVLSKRNRMKAA 465

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
           + + +K+   G  PD++    L+  +   GNLDRA    + +      PD+  YN+++  
Sbjct: 466 DDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQG 525

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
               G+ +    L+  M   GI      Y  L+  +++ GD+  A  I + M    F PT
Sbjct: 526 RCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPT 585

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGK 444
           L +   L++   +    D A      M+  G  PDD    S+I   GK
Sbjct: 586 LLTYNALIQGLCKNQQGDLAEELLKEMVSKGITPDDSTYFSLIEGIGK 633



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 72/167 (43%)

Query: 309 DRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLAL 368
           D A E F+ ++  G  P  + +N+M+  ++   Q +    L   M    I+ +   +  +
Sbjct: 183 DDAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAEMFRLKIKSTVYTFNIM 242

Query: 369 LRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH 428
           +    + G ++ A      M     +P + +   ++  Y   G  + AR   D M   G 
Sbjct: 243 INVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGV 302

Query: 429 KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
           +PD     S+I+   K   L++A  +L ++++ G  P   TY  L+D
Sbjct: 303 EPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLID 349


>gi|2244996|emb|CAB10416.1| salt-inducible protein homolog [Arabidopsis thaliana]
 gi|7268388|emb|CAB78681.1| salt-inducible protein homolog [Arabidopsis thaliana]
          Length = 777

 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 118/267 (44%), Gaps = 1/267 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+  +    K   LE +E++  +M E GI PD  T T ++    + G   RA E FE + 
Sbjct: 253 YNVTMKVFRKSKDLEKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKMS 312

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           S G +PD     +MI AY  AG   + +SL D   T         +  L+R +   G+  
Sbjct: 313 SFGCEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYD 372

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
           G   I   M+    +P L     L+++ G+A  P QA+  +  +I  G  P+    A+++
Sbjct: 373 GCLNIYEEMKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALV 432

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
            AYG+    D AL +  E+++ G       Y  L+      + ++EA ++   +      
Sbjct: 433 RAYGRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADNRHVDEAFEIFQDMKNCETC 492

Query: 500 PPFKIQV-SLCDMYARAGIEKKALQAL 525
            P      SL  +YA +G   KA  AL
Sbjct: 493 DPDSWTFSSLITVYACSGRVSKAEAAL 519



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/277 (22%), Positives = 122/277 (44%), Gaps = 2/277 (0%)

Query: 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320
           + +IDA+ +   ++ A  +  +        D VT + L+ +Y  +GN D     +E +++
Sbjct: 324 AAMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKA 383

Query: 321 HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRG 380
            G +P+  +YN +I +   A +P     +   +IT+G   +   Y AL+R++ +      
Sbjct: 384 LGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDD 443

Query: 381 AGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL-GHKPDDRCTASMI 439
           A  I   M+ +    T+     L+         D+A   F  M       PD    +S+I
Sbjct: 444 ALAIYREMKEKGLSLTVILYNTLLSMCADNRHVDEAFEIFQDMKNCETCDPDSWTFSSLI 503

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             Y     + KA   LL++ + GFEP     T ++   G+ + +++  +   ++ ELG  
Sbjct: 504 TVYACSGRVSKAEAALLQIREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGIT 563

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG 536
           P  +    L ++  +   E+   + +G +E  K ++G
Sbjct: 564 PDDRFCGCLLNVMTQTPSEEIG-KLIGCVEKAKPKLG 599



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/302 (21%), Positives = 137/302 (45%), Gaps = 7/302 (2%)

Query: 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV 350
           +++   V + ++ K+ +L+++++ F+ +   G +PD   + ++I      G PK  +   
Sbjct: 249 EVILYNVTMKVFRKSKDLEKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVEWF 308

Query: 351 DMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410
           + M + G E       A++ ++ + G+V  A  + +  R E+++    + + L+  YG +
Sbjct: 309 EKMSSFGCEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVS 368

Query: 411 GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATY 470
           G+ D   + ++ M  LG KP+      +I + G+     +A  +  +L  +GF P  +TY
Sbjct: 369 GNYDGCLNIYEEMKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTY 428

Query: 471 TVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEA 530
             LV   GR +  ++A  +  ++ E G +    +  +L  M A      +A +   F + 
Sbjct: 429 AALVRAYGRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADNRHVDEAFEI--FQDM 486

Query: 531 KK-EQMGPDD--FERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQ 587
           K  E   PD   F  +I      G +  A+     +   GF  +  +  ++I  Q + + 
Sbjct: 487 KNCETCDPDSWTFSSLITVYACSGRVSKAEAALLQIREAGFEPTLFVLTSVI--QCYGKA 544

Query: 588 RQ 589
           +Q
Sbjct: 545 KQ 546



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 36/223 (16%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           ++P+ + +  L+D +         K+    L    F  N   Y+ L+ A+ +    +DA 
Sbjct: 386 VKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDAL 445

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS-HGFQPDKKVYNSMIMA 336
            I ++M E G+   ++    L+ M +   ++D A E F+ +++     PD   ++S+I  
Sbjct: 446 AIYREMKEKGLSLTVILYNTLLSMCADNRHVDEAFEIFQDMKNCETCDPDSWTFSSLITV 505

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           Y  +G+               + ++E    ALL+       +R AG          F+PT
Sbjct: 506 YACSGR---------------VSKAEA---ALLQ-------IREAG----------FEPT 530

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
           L   T +++ YG+A   D     FD ++ LG  PDDR    ++
Sbjct: 531 LFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGCLL 573



 Score = 43.5 bits (101), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 1/128 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKM-NENGIVPDIVTSTVLVHMYSKAG 306
           + E+     V  Y+ L+   A    +++A  I + M N     PD  T + L+ +Y+ +G
Sbjct: 451 MKEKGLSLTVILYNTLLSMCADNRHVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSG 510

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            + +A+ A   +R  GF+P   V  S+I  Y  A Q    +   D ++  GI   +    
Sbjct: 511 RVSKAEAALLQIREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCG 570

Query: 367 ALLRSFAQ 374
            LL    Q
Sbjct: 571 CLLNVMTQ 578


>gi|449523013|ref|XP_004168519.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like, partial [Cucumis sativus]
          Length = 594

 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 112/258 (43%), Gaps = 37/258 (14%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++ LI+A        +A R+ KKM +NG+ PD+VT  +++  Y       +A   FE ++
Sbjct: 8   FNNLINACGSCGNWREALRVCKKMTDNGVGPDLVTHNIVLSAYKSGAQYSKALSYFELMK 67

Query: 320 SHGFQPDKKVYN-------------------------------------SMIMAYVNAGQ 342
               +PD    N                                     S+I  Y   GQ
Sbjct: 68  GTNIRPDTTTLNIVIHCLIKVKQYGQAIEIFSSMREKRSECRPDVVTFTSIIHLYSVRGQ 127

Query: 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402
            +   ++   M+  GI+ +   Y AL+ ++A  G  + A  + + M+   F P + S T 
Sbjct: 128 IEDCKAVFSTMLAEGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGFCPDVVSYTS 187

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           L+  +G++  P +AR  FD M R   KP+     +++ AYG    L +A+++L E+E+DG
Sbjct: 188 LISTFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILREMEQDG 247

Query: 463 FEPGPATYTVLVDWLGRL 480
             P   +   L+   GR 
Sbjct: 248 IHPNVVSICTLLAACGRF 265



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 145/342 (42%), Gaps = 12/342 (3%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  ++ +I  ++    +ED + +   M   GI P+IV+   L+  Y+  G    A   F
Sbjct: 111 DVVTFTSIIHLYSVRGQIEDCKAVFSTMLAEGIKPNIVSYNALISAYASHGMDKEAFSVF 170

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + ++  GF PD   Y S+I  +  + QP     + DMM  +  + +   Y AL+ ++   
Sbjct: 171 DEMKRSGFCPDVVSYTSLISTFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSN 230

Query: 376 GDVRGAGQITNIMRIEEFQPTLES-CTLLVEA--YGQAGDPDQARSNFDYMIRLGHKPDD 432
           G +  A  I   M  +   P + S CTLL     +GQ  + D   S  +  +R  H    
Sbjct: 231 GYLPQAVDILREMEQDGIHPNVVSICTLLAACGRFGQKVNIDSVLSAAE--LRGIHLNTI 288

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
            C  S I +Y      +KA+NL   +E    +P   T+T+L+    R+    EA     +
Sbjct: 289 ACN-SAIGSYMNIGEYEKAINLYRSMENKTTKPDSVTFTILISGCCRMSKYEEALCFFKE 347

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAG 550
           + +L      +I  S+   Y++ G   KA ++L F   K     PD   +  +IN   A 
Sbjct: 348 MLDLRIPLSSEIYSSMICAYSKQGQLVKA-ESL-FNSLKGSGCCPDLVTYTAMINAYSAS 405

Query: 551 GFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQPTR 592
              +    ++  MEA           AL+  + FN+  Q + 
Sbjct: 406 EMWEKVCALYQEMEANNIQLDSIACSALM--KAFNKGNQASN 445



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 111/263 (42%), Gaps = 41/263 (15%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           E  + N+  Y+ LI A+A     ++A  +  +M  +G  PD+V+ T L+  + ++    R
Sbjct: 141 EGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGFCPDVVSYTSLISTFGRSQQPAR 200

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A+E F+ ++ +  +P+   YN+++ AY + G     + ++  M   GI  +      LL 
Sbjct: 201 AREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILREMEQDGIHPNVVSICTLL- 259

Query: 371 SFAQCG---------------DVRGA--------GQITNIMRIEEFQ------------- 394
             A CG               ++RG           I + M I E++             
Sbjct: 260 --AACGRFGQKVNIDSVLSAAELRGIHLNTIACNSAIGSYMNIGEYEKAINLYRSMENKT 317

Query: 395 --PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P   + T+L+    +    ++A   F  M+ L         +SMI AY K+  L KA 
Sbjct: 318 TKPDSVTFTILISGCCRMSKYEEALCFFKEMLDLRIPLSSEIYSSMICAYSKQGQLVKAE 377

Query: 453 NLLLELEKDGFEPGPATYTVLVD 475
           +L   L+  G  P   TYT +++
Sbjct: 378 SLFNSLKGSGCCPDLVTYTAMIN 400



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 99/240 (41%), Gaps = 2/240 (0%)

Query: 288 IVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGM 347
           I P   T   L++     GN   A    + +  +G  PD   +N ++ AY +  Q    +
Sbjct: 1   IPPSRSTFNNLINACGSCGNWREALRVCKKMTDNGVGPDLVTHNIVLSAYKSGAQYSKAL 60

Query: 348 SLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR--IEEFQPTLESCTLLVE 405
           S  ++M  + I         ++    +      A +I + MR    E +P + + T ++ 
Sbjct: 61  SYFELMKGTNIRPDTTTLNIVIHCLIKVKQYGQAIEIFSSMREKRSECRPDVVTFTSIIH 120

Query: 406 AYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
            Y   G  +  ++ F  M+  G KP+     ++I+AY    +  +A ++  E+++ GF P
Sbjct: 121 LYSVRGQIEDCKAVFSTMLAEGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGFCP 180

Query: 466 GPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
              +YT L+   GR Q    A ++   +      P      +L D Y   G   +A+  L
Sbjct: 181 DVVSYTSLISTFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDIL 240



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 98/217 (45%), Gaps = 10/217 (4%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YS +I A++K+  L  AE +   +  +G  PD+VT T +++ YS +   ++    ++ + 
Sbjct: 360 YSSMICAYSKQGQLVKAESLFNSLKGSGCCPDLVTYTAMINAYSASEMWEKVCALYQEME 419

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           ++  Q D    ++++ A+    Q    + L ++M   GI  ++  +  +L + +   D R
Sbjct: 420 ANNIQLDSIACSALMKAFNKGNQASNVLILAEIMKEKGIPFNDANFFEMLSACSILRDWR 479

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  + N+M       +L +   L++  G++G  +     F   + LG   +    + ++
Sbjct: 480 KATDLINLMEPSFHLVSLGTINHLLQFLGKSGKTEIMIKLFYRFVALGSSVNINTYSILL 539

Query: 440 AAYGKKNLLD-----KALNLLLELEKDGFEPGPATYT 471
                KNLL      K + +L  +   G +P  A Y 
Sbjct: 540 -----KNLLSAGKWRKYIEVLQWMNDAGIQPSHAMYN 571


>gi|357502007|ref|XP_003621292.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124360248|gb|ABN08261.1| Pentatricopeptide repeat [Medicago truncatula]
 gi|355496307|gb|AES77510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 738

 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 144/321 (44%), Gaps = 16/321 (4%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +I     E  L++AE +  +M + G+VPD+     LVH Y  + N D+A   ++S+ 
Sbjct: 298 YTAVIRGFCNETKLDEAESVFLEMEKQGLVPDVYVYCALVHGYCNSRNFDKALAVYKSMI 357

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDM---MITSGIERSEEIYLALLRSFAQCG 376
           S G + +  +++ ++      G+    + +VDM      SG+    + Y  L  +  + G
Sbjct: 358 SRGIKTNCVIFSCILHCLDEMGR---ALEVVDMFEEFKESGLFIDRKAYNILFDALCKLG 414

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
            V  A  + + ++  +    ++  T L+  Y   G P +A+S F  M   G KPD     
Sbjct: 415 KVDDAVGMLDELKSMQLDVDMKHYTTLINGYFLQGKPIEAQSLFKEMEERGFKPDVVAYN 474

Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
            + A + +     +A++LL  +E  G EP   T+ ++++ L     + EAE+    +   
Sbjct: 475 VLAAGFFRNRTDFEAMDLLNYMESQGVEPNSTTHKIIIEGLCSAGKVEEAEEFFNWLK-- 532

Query: 497 GEAPPFKIQV--SLCDMYARAGIEKKAL---QALGFLEAKKE-QMGPDD--FERIINGLL 548
           GE+    +++  +L + Y  A + +K+    +A   L    E  M P    + +I   L 
Sbjct: 533 GESVEISVEIYTALVNGYCEAALIEKSHELKEAFILLRTMLEMNMKPSKVMYSKIFTALC 592

Query: 549 AGGFLQDAQRVHGLMEAQGFA 569
             G ++ A  +  L    GF 
Sbjct: 593 CNGNMEGAHTLFNLFIHTGFT 613



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 73/326 (22%), Positives = 135/326 (41%), Gaps = 10/326 (3%)

Query: 258 RDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFES 317
           + Y+ L DA  K   ++DA  +L ++    +  D+   T L++ Y   G    A+  F+ 
Sbjct: 401 KAYNILFDALCKLGKVDDAVGMLDELKSMQLDVDMKHYTTLINGYFLQGKPIEAQSLFKE 460

Query: 318 LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
           +   GF+PD   YN +   +         M L++ M + G+E +   +  ++      G 
Sbjct: 461 MEERGFKPDVVAYNVLAAGFFRNRTDFEAMDLLNYMESQGVEPNSTTHKIIIEGLCSAGK 520

Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAG------DPDQARSNFDYMIRLGHKPD 431
           V  A +  N ++ E  + ++E  T LV  Y +A       +  +A      M+ +  KP 
Sbjct: 521 VEEAEEFFNWLKGESVEISVEIYTALVNGYCEAALIEKSHELKEAFILLRTMLEMNMKPS 580

Query: 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
               + +  A      ++ A  L       GF P   TYT++++   +   + EA +L  
Sbjct: 581 KVMYSKIFTALCCNGNMEGAHTLFNLFIHTGFTPDAVTYTIMINGYCKTNCLPEAHELFK 640

Query: 492 KISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLA 549
            + E G  P       + + Y +    ++A +   F + K+  + PD   +  II GLL 
Sbjct: 641 DMKERGITPDAVTYTIMINGYCKMNCLREAHEL--FKDMKERGIKPDVIAYTVIIKGLLN 698

Query: 550 GGFLQDAQRVHGLMEAQGFAASERLK 575
            G  + A +++  M   G      LK
Sbjct: 699 SGHTEIAFQLYNEMIDMGMTPGATLK 724



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 57/106 (53%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F  +   Y+ +I+ + K NCL +A  + K M E GI PD VT T++++ Y K   L  A 
Sbjct: 612 FTPDAVTYTIMINGYCKTNCLPEAHELFKDMKERGITPDAVTYTIMINGYCKMNCLREAH 671

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
           E F+ ++  G +PD   Y  +I   +N+G  ++   L + MI  G+
Sbjct: 672 ELFKDMKERGIKPDVIAYTVIIKGLLNSGHTEIAFQLYNEMIDMGM 717



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 133/320 (41%), Gaps = 15/320 (4%)

Query: 192 KLITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLREQN----TQLYFKVAEL 246
            ++ D +  L K +D   +L E K + L      +  L++    Q      Q  FK  E 
Sbjct: 404 NILFDALCKLGKVDDAVGMLDELKSMQLDVDMKHYTTLINGYFLQGKPIEAQSLFKEME- 462

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
              E  F+ +V  Y+ L     +     +A  +L  M   G+ P+  T  +++     AG
Sbjct: 463 ---ERGFKPDVVAYNVLAAGFFRNRTDFEAMDLLNYMESQGVEPNSTTHKIIIEGLCSAG 519

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAG------QPKLGMSLVDMMITSGIER 360
            ++ A+E F  L+    +   ++Y +++  Y  A       + K    L+  M+   ++ 
Sbjct: 520 KVEEAEEFFNWLKGESVEISVEIYTALVNGYCEAALIEKSHELKEAFILLRTMLEMNMKP 579

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
           S+ +Y  +  +    G++ GA  + N+     F P   + T+++  Y +     +A   F
Sbjct: 580 SKVMYSKIFTALCCNGNMEGAHTLFNLFIHTGFTPDAVTYTIMINGYCKTNCLPEAHELF 639

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
             M   G  PD      MI  Y K N L +A  L  ++++ G +P    YTV++  L   
Sbjct: 640 KDMKERGITPDAVTYTIMINGYCKMNCLREAHELFKDMKERGIKPDVIAYTVIIKGLLNS 699

Query: 481 QLINEAEQLLGKISELGEAP 500
                A QL  ++ ++G  P
Sbjct: 700 GHTEIAFQLYNEMIDMGMTP 719



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 56/143 (39%), Gaps = 2/143 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           YSK+  A      +E A  +       G  PD VT T++++ Y K   L  A E F+ ++
Sbjct: 584 YSKIFTALCCNGNMEGAHTLFNLFIHTGFTPDAVTYTIMINGYCKTNCLPEAHELFKDMK 643

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  PD   Y  MI  Y      +    L   M   GI+     Y  +++     G   
Sbjct: 644 ERGITPDAVTYTIMINGYCKMNCLREAHELFKDMKERGIKPDVIAYTVIIKGLLNSGHTE 703

Query: 380 GAGQITNIMRIEEFQP--TLESC 400
            A Q+ N M      P  TL+ C
Sbjct: 704 IAFQLYNEMIDMGMTPGATLKRC 726


>gi|225443946|ref|XP_002272135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 733

 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 145/317 (45%), Gaps = 12/317 (3%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E  F+ +   YS ++ +  +E  ++ A+ I+ +M   G +PD+VT T +++   +   +D
Sbjct: 338 ERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVD 397

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP-----KLGMSLVDMMITSGIERSEEI 364
           +AK+    +  HG +P+   Y +++      G        + MS  D  I + I      
Sbjct: 398 QAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAI-----T 452

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
           Y  L+  F + G    A  +   M  + F PT     LL+++  Q    D+A+   +  +
Sbjct: 453 YSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCL 512

Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
             G   +     ++I  + +K+ L+ AL+LL ++      P   TYT ++D LG+   I 
Sbjct: 513 NNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIE 572

Query: 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERII 544
           EA +L  K+  +G  P      ++   Y R G  +  L+ L  + +++E      + ++I
Sbjct: 573 EATKLAMKMLRVGLIPTPVTYRTVIHQYCRMGRVEDLLKLLEKMLSRQECRTA--YNQVI 630

Query: 545 NGLLAGGFLQDAQRVHG 561
             L + G L+ A ++ G
Sbjct: 631 EKLCSFGNLEQAYKLLG 647



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/264 (19%), Positives = 110/264 (41%), Gaps = 6/264 (2%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N   Y+ L++   K     +A  ++    E+  +P+ +T +VL+H + + G    A +  
Sbjct: 414 NTVSYTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSSEACDLV 473

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   GF P     N +I +     +       ++  + +G   +   +  ++  F Q 
Sbjct: 474 REMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQK 533

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
            D+  A  + + M +    P + + T +++A G+ G  ++A      M+R+G  P     
Sbjct: 534 DDLEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGLIPTPVTY 593

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I  Y +   ++  L LL ++     +     Y  +++ L     + +A +LLGK+  
Sbjct: 594 RTVIHQYCRMGRVEDLLKLLEKMLSR--QECRTAYNQVIEKLCSFGNLEQAYKLLGKVLR 651

Query: 496 LGEAPPFKIQVSLCDMYARAGIEK 519
                  KI  + C M   + + K
Sbjct: 652 TAS----KIDANTCHMLIESYLSK 671



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/242 (18%), Positives = 107/242 (44%), Gaps = 1/242 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           +  ++ ++++   L +A R+L  M + GI PD+      +H+      LD+A    E ++
Sbjct: 172 FGYVMVSYSRAGKLRNAMRVLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLERMQ 231

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
               +P+   YN +I  Y +  + +  M L+  M   G    +  Y  ++    +   ++
Sbjct: 232 IVEIEPNVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPDKISYYTVMGFLCKEKRIK 291

Query: 380 GAGQIT-NIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
               +   +++     P   +    V    + G  D+A            + D    +++
Sbjct: 292 EVRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAI 351

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           + ++ ++  +DKA  ++ E+   G  P   TYT +++ L + + +++A+++L ++ + G 
Sbjct: 352 VHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGC 411

Query: 499 AP 500
            P
Sbjct: 412 KP 413



 Score = 43.9 bits (102), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 60/137 (43%)

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
           +Y A+L   ++    +GA ++  +M     +   E+   ++ +Y +AG    A      M
Sbjct: 136 VYYAMLEILSKTKLCQGAKRVLRLMAKRRIERRPEAFGYVMVSYSRAGKLRNAMRVLTMM 195

Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483
            + G +PD     + I      N LDKA+  L  ++    EP   TY  L+     L  +
Sbjct: 196 QKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLERMQIVEIEPNVITYNCLIKGYCDLHRL 255

Query: 484 NEAEQLLGKISELGEAP 500
            +A +L+ ++   G +P
Sbjct: 256 EDAMELIAEMPFKGCSP 272



 Score = 41.2 bits (95), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 58/304 (19%), Positives = 118/304 (38%), Gaps = 17/304 (5%)

Query: 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV 350
           D +    ++ + SK      AK     +     +   + +  ++++Y  AG+ +  M ++
Sbjct: 133 DPIVYYAMLEILSKTKLCQGAKRVLRLMAKRRIERRPEAFGYVMVSYSRAGKLRNAMRVL 192

Query: 351 DMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410
            MM  +GIE    I    +        +  A +    M+I E +P + +   L++ Y   
Sbjct: 193 TMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLERMQIVEIEPNVITYNCLIKGYCDL 252

Query: 411 GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE--LEKDGFEPGPA 468
              + A      M   G  PD     +++    K+  + K + LL+E  L+     P   
Sbjct: 253 HRLEDAMELIAEMPFKGCSPDKISYYTVMGFLCKEKRI-KEVRLLMEKMLKDSNLLPDQV 311

Query: 469 TYTVLVDWLGR-------LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKA 521
           TY   V  L +       L+ + EAE+   ++ ++G +       ++   + R G   KA
Sbjct: 312 TYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYS-------AIVHSFCREGRMDKA 364

Query: 522 LQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
            + +  + +K        +  +INGL     +  A+++   M   G   +     AL++ 
Sbjct: 365 KEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNG 424

Query: 582 QTFN 585
              N
Sbjct: 425 LCKN 428


>gi|255578276|ref|XP_002530005.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530484|gb|EEF32367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 499

 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 144/319 (45%), Gaps = 13/319 (4%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
            E+   +V  +S L+ AH +   LE A ++   M E     D+V+ T +V  YSKA    
Sbjct: 181 NETVGVDVVSWSGLVLAHVRGGELELARQVFDDMPEK----DVVSWTAMVSGYSKANCSR 236

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A E F  +   G +PD+    S+I A  N G  + GM++   +  +G      +  AL+
Sbjct: 237 EALELFWEMSDAGIRPDEVTIVSVISACTNLGDVETGMNVHSYINENGFGWMVSLCNALI 296

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
             +A+CG V  A ++ N M+    + +L +   ++ A    G  + A   F  M+  G  
Sbjct: 297 NMYAKCGCVDRAWRVFNNMK----RKSLITWNSMISACANHGYAEDAFELFSCMLNSGIA 352

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKD-GFEPGPATYTVLVDWLGRLQLINEAEQ 488
           PD     +++ AY  K L+D+   L   +E+D G E     Y  +VD LGR   + EA +
Sbjct: 353 PDGITFLALLIAYTHKGLVDEGYRLFQIMERDYGIEASIEHYGCIVDMLGRAGRLEEAYE 412

Query: 489 LLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLL 548
           L+  +        +   ++ C +Y    + ++ ++ L  LE K ++ G     R I   +
Sbjct: 413 LIVTMPIPSNDIVWGALLAACRIYGDVNMGERVVKKL--LELKPDEGGYYILLRDI--YV 468

Query: 549 AGGFLQDAQRVHGLMEAQG 567
           A G   +A  +   M+  G
Sbjct: 469 ASGRTAEANHIRQAMQESG 487



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 71/321 (22%), Positives = 128/321 (39%), Gaps = 30/321 (9%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           L  A+R+  +M +    P+      ++  Y+K+ +       F  +R +   PD+  +N 
Sbjct: 66  LPYAQRLFDQMPQ----PNTFFYNTIIRGYAKSSSPSYCVNLFNQMRQNHVDPDEFTFNF 121

Query: 333 MIMAYVNAGQPKLGMSLVDM------MITSGIERSEEIYLALLRSFAQCGDVRGAGQITN 386
           +I A     +     S ++       +   G      +  AL+  +A  G    A ++ N
Sbjct: 122 LIKARSRVHKVHNFPSTLECDEIHGAVFKYGFCSHLFVQNALINLYAVKGSPAAAWRVFN 181

Query: 387 IMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKN 446
               E     + S + LV A+ + G+ + AR  FD M     + D     +M++ Y K N
Sbjct: 182 ----ETVGVDVVSWSGLVLAHVRGGELELARQVFDDM----PEKDVVSWTAMVSGYSKAN 233

Query: 447 LLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQV 506
              +AL L  E+   G  P   T   ++     L  +     +   I+E G    F   V
Sbjct: 234 CSREALELFWEMSDAGIRPDEVTIVSVISACTNLGDVETGMNVHSYINENG----FGWMV 289

Query: 507 SLC----DMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGL 562
           SLC    +MYA+ G   +A +   F   K++ +    +  +I+     G+ +DA  +   
Sbjct: 290 SLCNALINMYAKCGCVDRAWRV--FNNMKRKSL--ITWNSMISACANHGYAEDAFELFSC 345

Query: 563 MEAQGFAASERLKVALISSQT 583
           M   G A      +AL+ + T
Sbjct: 346 MLNSGIAPDGITFLALLIAYT 366



 Score = 45.4 bits (106), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 64/144 (44%), Gaps = 5/144 (3%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           ++E  F   V   + LI+ +AK  C++ A R+   M        ++T   ++   +  G 
Sbjct: 280 INENGFGWMVSLCNALINMYAKCGCVDRAWRVFNNMKRK----SLITWNSMISACANHGY 335

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMM-ITSGIERSEEIYL 366
            + A E F  + + G  PD   + ++++AY + G    G  L  +M    GIE S E Y 
Sbjct: 336 AEDAFELFSCMLNSGIAPDGITFLALLIAYTHKGLVDEGYRLFQIMERDYGIEASIEHYG 395

Query: 367 ALLRSFAQCGDVRGAGQITNIMRI 390
            ++    + G +  A ++   M I
Sbjct: 396 CIVDMLGRAGRLEEAYELIVTMPI 419


>gi|302142431|emb|CBI19634.3| unnamed protein product [Vitis vinifera]
          Length = 839

 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 142/306 (46%), Gaps = 5/306 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENG-IVPDIVTSTVLVHMYSKAG 306
           +SE+    NV  Y+ LI  + K+  +++AE++L+ M E   +VPD     VL+  Y + G
Sbjct: 253 MSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTG 312

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            +D A    + +   G + +  + NS+I  Y   G+      ++  M+   ++     Y 
Sbjct: 313 KIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYN 372

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
            LL  + + G    A  + + M  E  +PT+ +   L++   + G  D A   +  M++ 
Sbjct: 373 TLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKR 432

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
           G  PD+   ++++    K    + A  L  ++   GF     T+  ++  L ++  + EA
Sbjct: 433 GVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEA 492

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
           E++  K+ +LG +P      +L D Y +A    +A +  G +E  +E + P     + N 
Sbjct: 493 EEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAME--REPISPS--IEMYNS 548

Query: 547 LLAGGF 552
           L++G F
Sbjct: 549 LISGLF 554



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 146/328 (44%), Gaps = 5/328 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           ++R  + L++   K      A  + ++M   GIVPD+   +++V+ + K G +D A    
Sbjct: 156 SLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFV 215

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + + + G +P+   Y+S+I  YV+ G  +    ++  M   G+ R+   Y  L++ + + 
Sbjct: 216 KKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQ 275

Query: 376 GDVRGAGQITNIMRIE-EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
             +  A ++   M+ E    P   +  +L++ Y + G  D A    D M+RLG K +   
Sbjct: 276 CKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFI 335

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
             S+I  Y K+  + +A  ++  +     +P   +Y  L+D   R    +EA  L  K+ 
Sbjct: 336 CNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKML 395

Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGF 552
           + G  P      +L     R G    ALQ    +   K  + PD+  +  +++GL     
Sbjct: 396 QEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLM--MKRGVAPDEVGYSTLLDGLFKMEN 453

Query: 553 LQDAQRVHGLMEAQGFAASERLKVALIS 580
            + A  +   + A+GF  S      +IS
Sbjct: 454 FEGASTLWKDILARGFTKSRITFNTMIS 481



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 84/378 (22%), Positives = 158/378 (41%), Gaps = 15/378 (3%)

Query: 211 LAEWKELLQPSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAK 269
           + +W   L+P    +  LLD   RE +T   F + + +L +E  +  V  Y+ L+    +
Sbjct: 359 MVDWN--LKPDSYSYNTLLDGYCREGHTSEAFNLCDKML-QEGIEPTVLTYNTLLKGLCR 415

Query: 270 ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKV 329
               +DA +I   M + G+ PD V  + L+    K  N + A   ++ + + GF   +  
Sbjct: 416 VGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRIT 475

Query: 330 YNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389
           +N+MI      G+      + D M   G       Y  L+  + +  +V  A ++   M 
Sbjct: 476 FNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAME 535

Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD 449
            E   P++E    L+    ++    +       M   G  P+     ++I  + K+ +LD
Sbjct: 536 REPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLD 595

Query: 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLC 509
           KA +   E+ ++G        + +V  L RL  I+EA  L+ K+ + G  P         
Sbjct: 596 KAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDH------- 648

Query: 510 DMYARAGIEKKALQALG--FLEAKKEQMGPDD--FERIINGLLAGGFLQDAQRVHGLMEA 565
           + + ++ I   A+Q +     E+ K  + P++  +   I GL   G + DA+R   ++  
Sbjct: 649 ECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSL 708

Query: 566 QGFAASERLKVALISSQT 583
           +GF         LI   +
Sbjct: 709 KGFVPDNFTYCTLIHGYS 726



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 117/254 (46%), Gaps = 7/254 (2%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  Y  LID   KE  L+ A     +M ENG+  +I+  + +V    + G +D A    
Sbjct: 577 NIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLM 636

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + +  HGF PD + +    + Y  A   K+  SL D    + +  +  +Y   +    + 
Sbjct: 637 QKMVDHGFFPDHECFLKSDIRY--AAIQKIADSL-DESCKTFLLPNNIVYNIAIAGLCKT 693

Query: 376 GDVRGAGQITNIMRIEEFQP-TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
           G V  A +  +++ ++ F P     CTL +  Y  AG+ D+A    D M+R G  P+   
Sbjct: 694 GKVDDARRFFSMLSLKGFVPDNFTYCTL-IHGYSAAGNVDEAFRLRDEMLRRGLVPNIVT 752

Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
             ++I    K   +D+A  L  +L + G  P   TY  L+D   ++  ++ A +L  K+ 
Sbjct: 753 YNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMI 812

Query: 495 ELGEAPPFKIQVSL 508
           E G +P   IQ +L
Sbjct: 813 EEGISP--SIQCNL 824



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 79/344 (22%), Positives = 140/344 (40%), Gaps = 38/344 (11%)

Query: 187 ITGKCKLITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLD-RLREQNTQLYFKVA 244
           I+G CK+         K  +   +  + K+L   P  I +  L+D   +  N    FKV 
Sbjct: 480 ISGLCKM--------GKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVK 531

Query: 245 ELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK 304
              +  E    ++  Y+ LI    K   L +   +L +M   G+ P+IVT   L+  + K
Sbjct: 532 G-AMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCK 590

Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
            G LD+A  ++  +  +G   +  + ++M+      G+      L+  M+  G     E 
Sbjct: 591 EGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHEC 650

Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL-ESC-----------TLLVEAYGQAGD 412
           +L          D+R A        I++   +L ESC            + +    + G 
Sbjct: 651 FLK--------SDIRYAA-------IQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGK 695

Query: 413 PDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTV 472
            D AR  F  +   G  PD+    ++I  Y     +D+A  L  E+ + G  P   TY  
Sbjct: 696 VDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNA 755

Query: 473 LVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
           L++ L + + ++ A++L  K+ + G  P      +L D Y + G
Sbjct: 756 LINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIG 799



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 77/348 (22%), Positives = 139/348 (39%), Gaps = 39/348 (11%)

Query: 258 RDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFES 317
           R Y  LID + +   ++DA R+L +M   G+  ++     L++ Y K G +  A+     
Sbjct: 299 RAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITR 358

Query: 318 LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
           +     +PD   YN+++  Y   G      +L D M+  GIE +   Y  LL+   + G 
Sbjct: 359 MVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGA 418

Query: 378 VRGAGQITNIM--------------------RIEEFQ--PTLESCTL------------- 402
              A QI ++M                    ++E F+   TL    L             
Sbjct: 419 FDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNT 478

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           ++    + G   +A   FD M  LG  PD     ++I  Y K + + +A  +   +E++ 
Sbjct: 479 MISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREP 538

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522
             P    Y  L+  L + + + E   LL ++   G  P      +L D + + G+  KA 
Sbjct: 539 ISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAF 598

Query: 523 QALGFLEAKKEQMGPDDF--ERIINGLLAGGFLQDAQRVHGLMEAQGF 568
            +  + E  +  +  +      +++GL   G + +A  +   M   GF
Sbjct: 599 SS--YFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGF 644



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/329 (21%), Positives = 136/329 (41%), Gaps = 7/329 (2%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           V  E +F   V D   ++  + ++   ++A  +   M + G +P + +   L++   K G
Sbjct: 114 VYREFAFSPTVFD--MILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNG 171

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
               A   ++ +   G  PD  + + M+ A+   G+       V  M   G+E +   Y 
Sbjct: 172 ETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYH 231

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI-R 425
           +L+  +   GDV  A  +   M  +     + + TLL++ Y +    D+A      M   
Sbjct: 232 SLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEE 291

Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485
               PD+R    +I  Y +   +D A+ LL E+ + G +        L++   +   I+E
Sbjct: 292 AALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHE 351

Query: 486 AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERI 543
           AE ++ ++ +    P      +L D Y R G   +A       +  +E + P    +  +
Sbjct: 352 AEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCD--KMLQEGIEPTVLTYNTL 409

Query: 544 INGLLAGGFLQDAQRVHGLMEAQGFAASE 572
           + GL   G   DA ++  LM  +G A  E
Sbjct: 410 LKGLCRVGAFDDALQIWHLMMKRGVAPDE 438



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 59/120 (49%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           +LS + F  +   Y  LI  ++    +++A R+  +M   G+VP+IVT   L++   K+ 
Sbjct: 705 MLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSE 764

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
           N+DRA+  F  L   G  P+   YN++I  Y   G       L D MI  GI  S +  L
Sbjct: 765 NVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSIQCNL 824



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 1/144 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+  I    K   ++DA R    ++  G VPD  T   L+H YS AGN+D A    + + 
Sbjct: 683 YNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEML 742

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P+   YN++I     +        L   +   G+  +   Y  L+  + + G++ 
Sbjct: 743 RRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMD 802

Query: 380 GAGQITNIMRIEEFQPTLESCTLL 403
            A ++ + M  E   P+++ C LL
Sbjct: 803 AAFKLKDKMIEEGISPSIQ-CNLL 825


>gi|449530582|ref|XP_004172273.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Cucumis sativus]
          Length = 505

 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 129/288 (44%), Gaps = 5/288 (1%)

Query: 228 LLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENG 287
           + +  R+    L FKV + + S+     N   Y+ LI    ++  +  AE +L++M    
Sbjct: 219 ITEYCRDGKLSLAFKVFDEI-SKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAH 277

Query: 288 IVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGM 347
           I P   T  +L+      G LD+A    E L+  G  P    YN +I  +   G   +  
Sbjct: 278 INPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVS 337

Query: 348 SLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAY 407
            LV  M   GI  S+  Y  L+ +F +  D+  A ++ ++M+     P   +  +L+   
Sbjct: 338 ELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGL 397

Query: 408 GQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGP 467
              G+  +A   +  M+ +  +P+D    +MI  Y K+    KAL  L E+ K+G  P  
Sbjct: 398 CIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYCKECNSYKALKFLEEMVKNGVTPNV 457

Query: 468 ATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
           A+Y   +  L +     EA++LL +++E G  PP     SLC    +A
Sbjct: 458 ASYISTIQILCKDGKSIEAKRLLKEMTEAGLKPP----ESLCSKVGQA 501



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 108/245 (44%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ LI+A  +   ++ A+ +  +M++ G+  +    T++++ + K G      E +
Sbjct: 141 NVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFELY 200

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           + ++  G  P+   YNS+I  Y   G+  L   + D +   G+  +   Y  L+    + 
Sbjct: 201 QKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRK 260

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G V  A  +   M+     PT  +  +L++     G  D+A S  + +  +G  P     
Sbjct: 261 GQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTY 320

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             +I+ + K         L+ E+E  G  P   TYT+L++   R   I +A ++   +  
Sbjct: 321 NILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKR 380

Query: 496 LGEAP 500
           +G  P
Sbjct: 381 IGLVP 385



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 64/312 (20%), Positives = 133/312 (42%), Gaps = 4/312 (1%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           Q +V  +   I A  +   +     +L +M   G+ P++   T+L+    + G++D+AK 
Sbjct: 104 QFDVYSFWITIKAFCENGNVSKGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKV 163

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            F  +   G   ++ +Y  MI  +   G  K G  L   M   G+  +   Y +L+  + 
Sbjct: 164 MFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYC 223

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           + G +  A ++ + +          +  +L+    + G   +A    + M R    P  R
Sbjct: 224 RDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTR 283

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
               ++        LDKAL+ L +L+  G  P   TY +L+    ++   +   +L+ ++
Sbjct: 284 TFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREM 343

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGG 551
            + G +P       L + + R+   +KA +    +  K+  + PD   +  +I+GL   G
Sbjct: 344 EDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLM--KRIGLVPDQHTYGVLIHGLCIKG 401

Query: 552 FLQDAQRVHGLM 563
            + +A +++  M
Sbjct: 402 NMVEASKLYKSM 413



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/270 (21%), Positives = 113/270 (41%), Gaps = 3/270 (1%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +I+   K+   +D   + +KM   G++P++ T   L+  Y + G L  A + F+ + 
Sbjct: 180 YTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEIS 239

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G   +   YN +I      GQ      L++ M  + I  +   +  L+      G + 
Sbjct: 240 KRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLD 299

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A      +++    PTL +  +L+  + + G+          M   G  P       ++
Sbjct: 300 KALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILM 359

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             + + + ++KA  +   +++ G  P   TY VL+  L     + EA +L   + E+   
Sbjct: 360 NTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQ 419

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLE 529
           P   I  ++ + Y +   E  + +AL FLE
Sbjct: 420 PNDVIYNTMINGYCK---ECNSYKALKFLE 446



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 115/296 (38%), Gaps = 5/296 (1%)

Query: 232 LREQNTQLYFKVAEL--VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIV 289
           L  + T  +F ++     L+ ES     RD   +I+A  +   LE +    K M   G  
Sbjct: 13  LSNRITSYFFTISSTQRNLNSESVCGRPRD--AVINASLQSQLLEQSLDGFKLMVLKGHS 70

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL 349
           P   +    + + +K+GNLDR    F        Q D   +   I A+   G    G  L
Sbjct: 71  PSSFSFNNALDLLAKSGNLDRTWGFFTEYLGRT-QFDVYSFWITIKAFCENGNVSKGFEL 129

Query: 350 VDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409
           +  M T G+  +  IY  L+ +  + GD+  A  + + M            T+++  + +
Sbjct: 130 LAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGFFK 189

Query: 410 AGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPAT 469
            G        +  M  +G  P+     S+I  Y +   L  A  +  E+ K G      T
Sbjct: 190 KGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVT 249

Query: 470 YTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
           Y +L+  L R   +++AE LL ++      P  +    L D     G   KAL  L
Sbjct: 250 YNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYL 305


>gi|242067351|ref|XP_002448952.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
 gi|241934795|gb|EES07940.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
          Length = 455

 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/314 (21%), Positives = 140/314 (44%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N   ++    A+AK   ++ A  I  KM ++G+ PD V+   L+    K G +D A+  F
Sbjct: 29  NHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPDAVSYGALIDALCKLGRVDDAEVKF 88

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             + + G  P+  V++S++    +  + +    L   M+  GI  +   +  +L +  + 
Sbjct: 89  NQMINEGVTPNIVVFSSLVYGLCSIDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKE 148

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G V    ++ + +     +P + S   L++ +  AG  D+A    + M+ +G KP+    
Sbjct: 149 GRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPNSFSY 208

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            +++  Y K   +D A +L  ++  +G  PG  TY  ++  L + +  +EA++L   +  
Sbjct: 209 NTLLHGYCKAGRIDSAYSLFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMIN 268

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
            G         ++ +   ++    +A +    L +K  Q+    F  +I  LL GG  +D
Sbjct: 269 SGTKWGIYTYNTILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKED 328

Query: 556 AQRVHGLMEAQGFA 569
           A  +   + A G  
Sbjct: 329 AMDLFAAIPANGLV 342



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 113/271 (41%), Gaps = 20/271 (7%)

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           M+  Y N G       L+++M+ +GI  +  I+     ++A+CG +  A  I N MR   
Sbjct: 1   MLHGYGNKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHG 60

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P   S   L++A  + G  D A   F+ MI  G  P+    +S++      +  +K  
Sbjct: 61  LSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFSSLVYGLCSIDKWEKVE 120

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
            L  E+   G  P    +  ++  L +   + E ++L+  I  +G  P      +L D +
Sbjct: 121 ELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGH 180

Query: 513 ARAGIEKKALQAL--------------------GFLEAKKEQMGPDDFERIINGLLAGGF 552
             AG   +A + L                    G+ +A +       F ++++  +  G 
Sbjct: 181 CLAGTIDEASKLLEGMVSVGLKPNSFSYNTLLHGYCKAGRIDSAYSLFRKMLSNGITPGV 240

Query: 553 LQDAQRVHGLMEAQGFAASERLKVALISSQT 583
           +     +HGL + + F+ ++ L + +I+S T
Sbjct: 241 VTYNTILHGLFQTKRFSEAKELYLNMINSGT 271



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 52/245 (21%), Positives = 106/245 (43%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+  ++ ++    KE  + + +R++  +   G+ PD+++   L+  +  AG +D A +  
Sbjct: 134 NIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLL 193

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
           E + S G +P+   YN+++  Y  AG+     SL   M+++GI      Y  +L    Q 
Sbjct: 194 EGMVSVGLKPNSFSYNTLLHGYCKAGRIDSAYSLFRKMLSNGITPGVVTYNTILHGLFQT 253

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
                A ++   M     +  + +   ++    ++   D+A   F  +   G + +    
Sbjct: 254 KRFSEAKELYLNMINSGTKWGIYTYNTILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITF 313

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
             MI A  K    + A++L   +  +G  P   TY V+ + L     + E + L   + +
Sbjct: 314 TIMIGALLKGGRKEDAMDLFAAIPANGLVPDVVTYRVVAENLIEEGSLEEFDSLFSAMEK 373

Query: 496 LGEAP 500
            G AP
Sbjct: 374 NGTAP 378



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 70/335 (20%), Positives = 135/335 (40%), Gaps = 12/335 (3%)

Query: 218 LQPSRIDWINLLDRL----REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCL 273
           L P  + +  L+D L    R  + ++ F      +  E    N+  +S L+      +  
Sbjct: 61  LSPDAVSYGALIDALCKLGRVDDAEVKFNQ----MINEGVTPNIVVFSSLVYGLCSIDKW 116

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
           E  E +  +M   GI P+IV    ++    K G +   +   +S+   G +PD   YN++
Sbjct: 117 EKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTL 176

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           I  +  AG       L++ M++ G++ +   Y  LL  + + G +  A  +   M     
Sbjct: 177 IDGHCLAGTIDEASKLLEGMVSVGLKPNSFSYNTLLHGYCKAGRIDSAYSLFRKMLSNGI 236

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
            P + +   ++    Q     +A+  +  MI  G K       +++    K N +D+A  
Sbjct: 237 TPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWGIYTYNTILNGLCKSNCVDEAFK 296

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
           +   L   G +    T+T+++  L +     +A  L   I   G  P     V    + A
Sbjct: 297 MFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVP----DVVTYRVVA 352

Query: 514 RAGIEKKALQALGFLEAKKEQMGPDDFERIINGLL 548
              IE+ +L+    L +  E+ G     +++N L+
Sbjct: 353 ENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALV 387



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/203 (20%), Positives = 92/203 (45%), Gaps = 4/203 (1%)

Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQT--NVRDYSKLIDAHAKENCLED 275
           + P  + +  +L  L +  T+ + +  EL L+  +  T   +  Y+ +++   K NC+++
Sbjct: 236 ITPGVVTYNTILHGLFQ--TKRFSEAKELYLNMINSGTKWGIYTYNTILNGLCKSNCVDE 293

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A ++ + +   G+  +I+T T+++    K G  + A + F ++ ++G  PD   Y  +  
Sbjct: 294 AFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPDVVTYRVVAE 353

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
             +  G  +   SL   M  +G   + ++  AL+R     GD+  AG   + +    F  
Sbjct: 354 NLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERNFSV 413

Query: 396 TLESCTLLVEAYGQAGDPDQARS 418
              + ++L+  +        A+S
Sbjct: 414 EASTTSMLISIFSSDEYQHHAKS 436



 Score = 46.2 bits (108), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 43/244 (17%), Positives = 102/244 (41%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N   Y+ L+  + K   ++ A  + +KM  NGI P +VT   ++H   +      AKE +
Sbjct: 204 NSFSYNTLLHGYCKAGRIDSAYSLFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELY 263

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
            ++ + G +     YN+++     +        +   + + G++ +   +  ++ +  + 
Sbjct: 264 LNMINSGTKWGIYTYNTILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKG 323

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G    A  +   +      P + +  ++ E   + G  ++  S F  M + G  P+ +  
Sbjct: 324 GRKEDAMDLFAAIPANGLVPDVVTYRVVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQML 383

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            +++     +  + +A   L +L++  F    +T ++L+      +  + A+ L  K   
Sbjct: 384 NALVRRLLHRGDISRAGAYLSKLDERNFSVEASTTSMLISIFSSDEYQHHAKSLPKKYRI 443

Query: 496 LGEA 499
           L EA
Sbjct: 444 LNEA 447


>gi|53793262|dbj|BAD54485.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 713

 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 93/404 (23%), Positives = 168/404 (41%), Gaps = 46/404 (11%)

Query: 194 ITDKILSLEKE----EDPSPLLAEWKELLQPSRIDWIN--LLDRLREQNTQLYFKVAELV 247
           + D +LS+  +    +D    +A  +EL  P      N  LL   R+++ +L  ++ E +
Sbjct: 124 VVDTLLSVLADRGLLDDAVRAVARVRELRVPPNTRTCNHILLRLARDRSGRLVRRLFEQL 183

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
            +   F  N+     +ID   KE  L +A  +  +M E G +PD+VT   L+  Y K G 
Sbjct: 184 PAPNVFTFNI-----VIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGE 238

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           LD  ++  E +R  G + D   YN++I  +   G+ +        M   G+  +   +  
Sbjct: 239 LDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFST 298

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR-- 425
            + +F + G VR A ++   MR+        + T L++   +AG  D A    D M+R  
Sbjct: 299 FVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQG 358

Query: 426 ---------------------------------LGHKPDDRCTASMIAAYGKKNLLDKAL 452
                                             G + ++    ++I  +      +KAL
Sbjct: 359 VPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKAL 418

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
            LL E++  G E   + Y  L+  L  +  ++EA+ LL K+ E G  P + I  ++ D  
Sbjct: 419 GLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDAC 478

Query: 513 ARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDA 556
            ++G   +A+  L  +     Q     +  +I+GL   G + +A
Sbjct: 479 FKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEA 522



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 124/274 (45%), Gaps = 16/274 (5%)

Query: 224 DWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKM 283
           D I LLD +  Q   L                NV  Y+ L+D   KE  + +AE +L+ M
Sbjct: 346 DAIVLLDEMVRQGVPL----------------NVVTYTVLVDGLCKERKVAEAEDVLRMM 389

Query: 284 NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343
            + G+  + +  T L+H +    N ++A      +++ G + D  +Y ++I    N  + 
Sbjct: 390 EKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKL 449

Query: 344 KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403
               SL+  M  SG+E +  IY  ++ +  + G V  A  +   +    FQP + +   L
Sbjct: 450 DEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCAL 509

Query: 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGF 463
           ++   +AG  D+A S+F+ M  LG  P+ +   +++    K   L++A+ L  E+   G 
Sbjct: 510 IDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGM 569

Query: 464 EPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
                 YT L+D   +   +++A  L  K+ + G
Sbjct: 570 SLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSG 603



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 72/321 (22%), Positives = 136/321 (42%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LID   K   L+DA  +L +M   G+  ++VT TVLV    K   +  A++    + 
Sbjct: 331 YTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMME 390

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G + ++ +Y ++I  +      +  + L+  M   G+E    +Y AL++       + 
Sbjct: 391 KAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLD 450

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  +   M     +P     T +++A  ++G   +A +    ++  G +P+     ++I
Sbjct: 451 EAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALI 510

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
               K   +D+A++   ++   G +P    YT LVD L +   +NEA QL  ++   G +
Sbjct: 511 DGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMS 570

Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
               +  +L D Y + G    A      +     Q+    +   I+G      + +A+ V
Sbjct: 571 LDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREV 630

Query: 560 HGLMEAQGFAASERLKVALIS 580
              M   G A    +   LIS
Sbjct: 631 FSEMIGHGIAPDRAVYNCLIS 651



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 99/213 (46%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E   + N   Y+ ++DA  K   + +A  +L+K+ ++G  P+++T   L+    KAG+
Sbjct: 459 MDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGS 518

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D A   F  +R  G  P+ + Y +++      G     + L + M+  G+   + +Y A
Sbjct: 519 IDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTA 578

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           LL  + + G++  A  +   M     Q  L   T  +  +       +AR  F  MI  G
Sbjct: 579 LLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHG 638

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
             PD      +I+ Y K   L++A++L  E+E+
Sbjct: 639 IAPDRAVYNCLISKYQKLGNLEEAISLQDEMER 671



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 108/242 (44%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +  +  + ++  Y  LI      + L++A+ +L KM+E+G+ P+ +  T ++    K+G 
Sbjct: 424 MKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGK 483

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +  A    + +   GFQP+   Y ++I     AG     +S  + M   G++ + + Y A
Sbjct: 484 VPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTA 543

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    + G +  A Q+ N M  +         T L++ Y + G+   A +    MI  G
Sbjct: 544 LVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSG 603

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            + D  C    I+ +   N++ +A  +  E+   G  P  A Y  L+    +L  + EA 
Sbjct: 604 LQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAI 663

Query: 488 QL 489
            L
Sbjct: 664 SL 665



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 105/246 (42%), Gaps = 11/246 (4%)

Query: 198 ILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKVAELV-----LSEE 251
           + ++ K ++   LL +  E  L+P+ I +  ++D   +       KV E +     + + 
Sbjct: 443 LCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSG-----KVPEAIAMLQKILDS 497

Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311
            FQ NV  Y  LID   K   +++A     KM + G+ P++   T LV    K G L+ A
Sbjct: 498 GFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEA 557

Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
            + F  +   G   DK VY +++  Y+  G      +L   MI SG++     Y   +  
Sbjct: 558 VQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISG 617

Query: 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
           F     +  A ++ + M      P       L+  Y + G+ ++A S  D M R+     
Sbjct: 618 FCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAISLQDEMERVLPSCT 677

Query: 432 DRCTAS 437
           D  TA+
Sbjct: 678 DSDTAT 683



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/195 (22%), Positives = 83/195 (42%)

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P + +   L++ YG+ G+ D+     + M R G K D     ++I  + K   ++ A   
Sbjct: 221 PDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGY 280

Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
              ++++G      T++  VD   +  L+ EA +L  ++   G A        L D   +
Sbjct: 281 FAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCK 340

Query: 515 AGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERL 574
           AG    A+  L  +  +   +    +  +++GL     + +A+ V  +ME  G  A+E L
Sbjct: 341 AGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELL 400

Query: 575 KVALISSQTFNRQRQ 589
              LI     N+  +
Sbjct: 401 YTTLIHGHFMNKNSE 415


>gi|125524465|gb|EAY72579.1| hypothetical protein OsI_00445 [Oryza sativa Indica Group]
          Length = 1014

 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 84/338 (24%), Positives = 146/338 (43%), Gaps = 33/338 (9%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           ++E     N   ++ LI+   K+  +++A R+  KM ++ ++P+ VT  V++  Y   GN
Sbjct: 469 MAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGN 528

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           + +A + ++ +   G +PD   Y S+I                 + +TSG+ ++ E    
Sbjct: 529 IRKAFQLYDQMVEMGLKPDNYTYRSLISG---------------LCLTSGVSKANEFVAD 573

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPT---------------LESCTLLVEAYGQAGD 412
           L  S+A   +      +  + R   F  T               L S T++V A  +  D
Sbjct: 574 LENSYAVLNNFSLTALLYGLFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHD 633

Query: 413 PDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTV 472
            +++   F  M   G KPDD     MI A  K+  + +ALN   ++  DG+ P   T+TV
Sbjct: 634 KEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVIDGYSPNTVTHTV 693

Query: 473 LVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVS-LCDMYARAGIEKKALQALGFLEAK 531
           L++ L +   +  AE LL K    G   P K   +   D +A  G  +KA + L     +
Sbjct: 694 LINNLCKSGYLGSAE-LLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKA-KDLHSAMLQ 751

Query: 532 KEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
                   F  +I GL   G +Q+A  +   +   GF+
Sbjct: 752 GHLASIVSFNILIKGLCKAGKIQEAIDLMRKITESGFS 789



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 86/361 (23%), Positives = 147/361 (40%), Gaps = 15/361 (4%)

Query: 186 PITGKCKLITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKVA 244
           P    C  + D++   E  E+   L  +  +L + P+   +  L+D+L +      F  A
Sbjct: 301 PSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNER---FDDA 357

Query: 245 ELVLSE---ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM 301
           + +  E      + N   Y+ LI A  K   +EDA  +  KM + GI   +     L++ 
Sbjct: 358 DRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLING 417

Query: 302 YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS 361
           Y K G+LDRA+     +   G  P    Y+ +I      G     M L   M   GI  +
Sbjct: 418 YCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSAMELHREMAERGIAWN 477

Query: 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421
              + AL+  F +   +  A ++ + M      P   +  +++E Y   G+  +A   +D
Sbjct: 478 NYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYD 537

Query: 422 YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ 481
            M+ +G KPD+    S+I+     + + KA   + +LE         + T L+  L R  
Sbjct: 538 QMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGLFREG 597

Query: 482 LINEAEQLLGKISELG---EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
              E   L  +++  G   +   F I V     YA      K    + F E K++ + PD
Sbjct: 598 RFTETYHLWDEMAVRGVKLDLVSFTIIV-----YAALKQHDKEKSCVLFREMKEQGVKPD 652

Query: 539 D 539
           D
Sbjct: 653 D 653



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/307 (23%), Positives = 131/307 (42%), Gaps = 4/307 (1%)

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A  +  KM ++G+  D    T  +  Y ++ NLD A+     + S G +     YN ++ 
Sbjct: 182 ARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRMESEGVKASAVPYNVLMY 241

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
                 + +  + + ++M+  G+   E  Y  L+  F +  ++  A +IT+ M    F P
Sbjct: 242 GLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVP 301

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
           +  +C+ +++   +    ++A S    +  LG  P+     ++I    K    D A  L 
Sbjct: 302 SEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLF 361

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
            E+   G EP   TY +L+  L +  +I +A  L  K+ + G         SL + Y + 
Sbjct: 362 KEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQ 421

Query: 516 GIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASER 573
           G   +A   L  +   KE + P    +  +I GL   G L  A  +H  M  +G A +  
Sbjct: 422 GSLDRARGLLSGM--VKEGLTPTAASYSPLIAGLCRNGDLSSAMELHREMAERGIAWNNY 479

Query: 574 LKVALIS 580
              ALI+
Sbjct: 480 TFTALIN 486



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/311 (19%), Positives = 131/311 (42%), Gaps = 9/311 (2%)

Query: 242 KVAELVLSEESFQTNVRDYS--KLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLV 299
           K  E V   E+    + ++S   L+    +E    +   +  +M   G+  D+V+ T++V
Sbjct: 566 KANEFVADLENSYAVLNNFSLTALLYGLFREGRFTETYHLWDEMAVRGVKLDLVSFTIIV 625

Query: 300 HMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
           +   K  + +++   F  ++  G +PD   Y  MI A          ++  D M+  G  
Sbjct: 626 YAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVIDGYS 685

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
            +   +  L+ +  + G +  A  +   M      P   +    ++ +   GD ++A+  
Sbjct: 686 PNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDL 745

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
              M++ GH         +I    K   + +A++L+ ++ + GF P   +Y+ ++  L +
Sbjct: 746 HSAMLQ-GHLASIVSFNILIKGLCKAGKIQEAIDLMRKITESGFSPDCISYSTIIHELCK 804

Query: 480 LQLINEAEQLLGKISELGEAP---PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG 536
           +  IN+A +L  ++   G  P    + I +  C+++   G   KAL     +     Q  
Sbjct: 805 MGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVH---GESDKALGIYTNMIRSGVQPN 861

Query: 537 PDDFERIINGL 547
            D +  +++G+
Sbjct: 862 WDTYRALLSGI 872



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 102/240 (42%), Gaps = 2/240 (0%)

Query: 193 LITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEE 251
           +I    L    +E    L  E KE  ++P  I +  ++D L ++   +        +  +
Sbjct: 623 IIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVID 682

Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311
            +  N   ++ LI+   K   L  AE + K+M    ++P+  T    +  ++  G++++A
Sbjct: 683 GYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKA 742

Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
           K+   S    G       +N +I     AG+ +  + L+  +  SG       Y  ++  
Sbjct: 743 KD-LHSAMLQGHLASIVSFNILIKGLCKAGKIQEAIDLMRKITESGFSPDCISYSTIIHE 801

Query: 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
             + GD+  A ++ N M  +  +P + +  + +      G+ D+A   +  MIR G +P+
Sbjct: 802 LCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGVQPN 861


>gi|255566084|ref|XP_002524030.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536757|gb|EEF38398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1016

 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 162/359 (45%), Gaps = 42/359 (11%)

Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311
           + + ++  Y+ +I  + K++ LE+A  + ++M  NG +PD+VT + +V+   K G L  A
Sbjct: 233 NLEADLITYTTIISTYCKQHGLEEARALYEEMIINGFLPDVVTYSSIVNGLCKDGRLSEA 292

Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAG--------QPKL---GMSLVDMMITS---G 357
           +E    ++  G  P+   Y ++I +   AG        Q +L   GM+L  +M T+   G
Sbjct: 293 QELLREMKKMGVDPNHVAYTTLIDSLFKAGSAWEAFACQSQLVVRGMTLDLVMCTTLVDG 352

Query: 358 IERSEE---------------------IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
           + +S +                      Y AL+  + + GD+     +   M  +   P 
Sbjct: 353 LFKSSKPKEAEDMFRALSKLNLIPNSITYTALIDGYCKVGDMERVESLLQEMEEKHINPN 412

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           + + + ++  Y + G  D+A +    M+     P+    A +I  Y K    + A +L  
Sbjct: 413 VITYSSIINGYTKKGILDEAINVMKKMLDQNIIPNAYVYAILIDGYCKAGKQEIATDLYN 472

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
           E++  G +     + VLV+ L R + ++EAE+LL  ++  G         SL D + +AG
Sbjct: 473 EMKLSGLKVNNVLFDVLVNNLKRGKRMDEAEELLKDVTSRGLLLDHVNYTSLMDGFFKAG 532

Query: 517 IEKKALQALGFLEAKKEQMGPDD---FERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572
            E  AL     +E   E+  P D   +  +INGLL  G  + A+ V+  M   G A ++
Sbjct: 533 KESAALN---MVEEMTEKSIPFDVVTYNVLINGLLEHGKYE-AKSVYSGMIEMGLAPNQ 587



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 63/281 (22%), Positives = 128/281 (45%), Gaps = 1/281 (0%)

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
           +RI K  N N +  D++T T ++  Y K   L+ A+  +E +  +GF PD   Y+S++  
Sbjct: 224 DRIKKDDNLN-LEADLITYTTIISTYCKQHGLEEARALYEEMIINGFLPDVVTYSSIVNG 282

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
               G+      L+  M   G++ +   Y  L+ S  + G    A    + + +      
Sbjct: 283 LCKDGRLSEAQELLREMKKMGVDPNHVAYTTLIDSLFKAGSAWEAFACQSQLVVRGMTLD 342

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           L  CT LV+   ++  P +A   F  + +L   P+     ++I  Y K   +++  +LL 
Sbjct: 343 LVMCTTLVDGLFKSSKPKEAEDMFRALSKLNLIPNSITYTALIDGYCKVGDMERVESLLQ 402

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
           E+E+    P   TY+ +++   +  +++EA  ++ K+ +    P   +   L D Y +AG
Sbjct: 403 EMEEKHINPNVITYSSIINGYTKKGILDEAINVMKKMLDQNIIPNAYVYAILIDGYCKAG 462

Query: 517 IEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQ 557
            ++ A      ++    ++    F+ ++N L  G  + +A+
Sbjct: 463 KQEIATDLYNEMKLSGLKVNNVLFDVLVNNLKRGKRMDEAE 503



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 108/229 (47%), Gaps = 1/229 (0%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           +E A  +L +M+  GI P++V   VL++  SK+G  +   +  E L   G + +++ YN+
Sbjct: 638 IEKAMNVLNEMSVMGIHPNLVIHRVLLNASSKSGKANAVLQMHEQLVDMGLKINQEAYNN 697

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I+ +      K   S++  MI  G       Y AL+R + +   V+ A      M  E 
Sbjct: 698 LIVVFCRLRMTKKATSVLKYMIRDGFVADTVTYNALIRGYCESSHVKKALATYTQMLNEG 757

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P + +  LL+     AG   +    FD M   G  PD     ++I+ YGK     +++
Sbjct: 758 VSPNIVTYNLLLGGLLGAGLMAERDELFDKMKENGLNPDASTYDTLISGYGKIGNKKESI 817

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
            L  E+   GF P  +TY VL+    ++  +++A +LL ++   G  PP
Sbjct: 818 RLYCEMVAQGFVPKTSTYNVLISDFAKVGKMDQARELLNEMQVRG-VPP 865



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 71/329 (21%), Positives = 136/329 (41%), Gaps = 15/329 (4%)

Query: 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318
           +Y+ L+D   K      A  ++++M E  I  D+VT  VL++   + G  + AK  +  +
Sbjct: 520 NYTSLMDGFFKAGKESAALNMVEEMTEKSIPFDVVTYNVLINGLLEHGKYE-AKSVYSGM 578

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
              G  P++  YN MI AY   G+    + L + M +  I  S      L+   ++ G++
Sbjct: 579 IEMGLAPNQATYNIMIKAYCKQGELDNALELWNEMKSHKIMPSSITCNTLVVGLSEAGEI 638

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             A  + N M +    P L    +L+ A  ++G  +      + ++ +G K +     ++
Sbjct: 639 EKAMNVLNEMSVMGIHPNLVIHRVLLNASSKSGKANAVLQMHEQLVDMGLKINQEAYNNL 698

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           I  + +  +  KA ++L  + +DGF     TY  L+        + +A     ++   G 
Sbjct: 699 IVVFCRLRMTKKATSVLKYMIRDGFVADTVTYNALIRGYCESSHVKKALATYTQMLNEGV 758

Query: 499 APPFKIQVSLCDMYARAGIEKKALQALG-----FLEAKKEQMGPD--DFERIINGLLAGG 551
           +P           Y            +      F + K+  + PD   ++ +I+G    G
Sbjct: 759 SPNIVT-------YNLLLGGLLGAGLMAERDELFDKMKENGLNPDASTYDTLISGYGKIG 811

Query: 552 FLQDAQRVHGLMEAQGFAASERLKVALIS 580
             +++ R++  M AQGF         LIS
Sbjct: 812 NKKESIRLYCEMVAQGFVPKTSTYNVLIS 840



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 82/376 (21%), Positives = 140/376 (37%), Gaps = 56/376 (14%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ +I    +   +  A   L  M +     D +T  +LV  + + G     +   ++L 
Sbjct: 80  YNTVIWGFCQHGLVNQAFGFLSIMVKKDTCFDTITCNILVKGFCRIGLAKYGERIMDNLV 139

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
           S G   D   +N++I  Y  AG+  L + LV+ M   G+      Y  L+  F + G+  
Sbjct: 140 SGGTCKDVIGFNTLIDGYCKAGEMSLALDLVERMRKEGLLSDIVSYNTLINGFCKRGEYD 199

Query: 380 GAGQITN------------IMRIEE---------FQPTLESCTLLVEAYGQAGDPDQARS 418
            A  + +               I++          +  L + T ++  Y +    ++AR+
Sbjct: 200 KAKSLLHEISESRGVKDSVFFNIDDRIKKDDNLNLEADLITYTTIISTYCKQHGLEEARA 259

Query: 419 NFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLG 478
            ++ MI  G  PD    +S++    K   L +A  LL E++K G +P    YT L+D L 
Sbjct: 260 LYEEMIINGFLPDVVTYSSIVNGLCKDGRLSEAQELLREMKKMGVDPNHVAYTTLIDSLF 319

Query: 479 R--------------------LQLI---------------NEAEQLLGKISELGEAPPFK 503
           +                    L L+                EAE +   +S+L   P   
Sbjct: 320 KAGSAWEAFACQSQLVVRGMTLDLVMCTTLVDGLFKSSKPKEAEDMFRALSKLNLIPNSI 379

Query: 504 IQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLM 563
              +L D Y + G  ++    L  +E K        +  IING    G L +A  V   M
Sbjct: 380 TYTALIDGYCKVGDMERVESLLQEMEEKHINPNVITYSSIINGYTKKGILDEAINVMKKM 439

Query: 564 EAQGFAASERLKVALI 579
             Q    +  +   LI
Sbjct: 440 LDQNIIPNAYVYAILI 455



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 68/342 (19%), Positives = 141/342 (41%), Gaps = 23/342 (6%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           +++   N   Y+ LID + K    E A  +  +M  +G+  + V   VLV+   +   +D
Sbjct: 441 DQNIIPNAYVYAILIDGYCKAGKQEIATDLYNEMKLSGLKVNNVLFDVLVNNLKRGKRMD 500

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A+E  + + S G   D   Y S++  +  AG+    +++V+ M    I      Y  L+
Sbjct: 501 EAEELLKDVTSRGLLLDHVNYTSLMDGFFKAGKESAALNMVEEMTEKSIPFDVVTYNVLI 560

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               + G        + ++ +    P   +  ++++AY + G+ D A   ++ M      
Sbjct: 561 NGLLEHGKYEAKSVYSGMIEM-GLAPNQATYNIMIKAYCKQGELDNALELWNEMKSHKIM 619

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           P      +++    +   ++KA+N+L E+   G  P    + VL++   +    N   Q+
Sbjct: 620 PSSITCNTLVVGLSEAGEIEKAMNVLNEMSVMGIHPNLVIHRVLLNASSKSGKANAVLQM 679

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLA 549
             ++ ++G     +   +L  ++ R  + KKA   L +                   ++ 
Sbjct: 680 HEQLVDMGLKINQEAYNNLIVVFCRLRMTKKATSVLKY-------------------MIR 720

Query: 550 GGFLQDAQRVHGLMEAQGFAASERLKVALIS-SQTFNRQRQP 590
            GF+ D    + L+  +G+  S  +K AL + +Q  N    P
Sbjct: 721 DGFVADTVTYNALI--RGYCESSHVKKALATYTQMLNEGVSP 760



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 60/258 (23%), Positives = 108/258 (41%), Gaps = 12/258 (4%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L +   + N   Y+ LI    +    + A  +LK M  +G V D VT   L+  Y ++ +
Sbjct: 683 LVDMGLKINQEAYNNLIVVFCRLRMTKKATSVLKYMIRDGFVADTVTYNALIRGYCESSH 742

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           + +A   +  + + G  P+   YN ++   + AG       L D M  +G+      Y  
Sbjct: 743 VKKALATYTQMLNEGVSPNIVTYNLLLGGLLGAGLMAERDELFDKMKENGLNPDASTYDT 802

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+  + + G+ + + ++   M  + F P   +  +L+  + + G  DQAR   + M   G
Sbjct: 803 LISGYGKIGNKKESIRLYCEMVAQGFVPKTSTYNVLISDFAKVGKMDQARELLNEMQVRG 862

Query: 428 HKPDDRCTASMIAAY---GKKNLLDKAL---------NLLLELEKDGFEPGPATYTVLVD 475
             P       +I  +    K   LD+ L         NL+ E+   GF P  +T   +  
Sbjct: 863 VPPSSSTYDILICGWCNLSKHPDLDRTLKKIYRTDAKNLITEMNDKGFVPCKSTIACISS 922

Query: 476 WLGRLQLINEAEQLLGKI 493
              R   + +AE+LL +I
Sbjct: 923 TFARPGKMLDAEKLLKEI 940



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 124/294 (42%), Gaps = 59/294 (20%)

Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY- 337
           I  +M  + + P++ T  VLVH + K GNL     A + LR+   + D   YN++I  + 
Sbjct: 32  IYTEMLCSAVPPNVYTHNVLVHAWCKMGNLIL---ALDLLRNVDVEVDTVTYNTVIWGFC 88

Query: 338 ----VN------------------------------AGQPKLGMSLVDMMITSGIERSEE 363
               VN                               G  K G  ++D +++ G  +   
Sbjct: 89  QHGLVNQAFGFLSIMVKKDTCFDTITCNILVKGFCRIGLAKYGERIMDNLVSGGTCKDVI 148

Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS----- 418
            +  L+  + + G++  A  +   MR E     + S   L+  + + G+ D+A+S     
Sbjct: 149 GFNTLIDGYCKAGEMSLALDLVERMRKEGLLSDIVSYNTLINGFCKRGEYDKAKSLLHEI 208

Query: 419 ------------NFDYMIR----LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
                       N D  I+    L  + D     ++I+ Y K++ L++A  L  E+  +G
Sbjct: 209 SESRGVKDSVFFNIDDRIKKDDNLNLEADLITYTTIISTYCKQHGLEEARALYEEMIING 268

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
           F P   TY+ +V+ L +   ++EA++LL ++ ++G  P      +L D   +AG
Sbjct: 269 FLPDVVTYSSIVNGLCKDGRLSEAQELLREMKKMGVDPNHVAYTTLIDSLFKAG 322



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 68/320 (21%), Positives = 131/320 (40%), Gaps = 24/320 (7%)

Query: 283 MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
           M ++ IVP ++    L++ ++  G + +  + +  +      P+   +N ++ A+   G 
Sbjct: 1   MRKHNIVPTLLLWNQLIYHFNAFGLVSQVCDIYTEMLCSAVPPNVYTHNVLVHAWCKMGN 60

Query: 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402
             L +   D++    +E     Y  ++  F Q G V  A    +IM  ++      +C +
Sbjct: 61  LILAL---DLLRNVDVEVDTVTYNTVIWGFCQHGLVNQAFGFLSIMVKKDTCFDTITCNI 117

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           LV+ + + G         D ++  G   D     ++I  Y K   +  AL+L+  + K+G
Sbjct: 118 LVKGFCRIGLAKYGERIMDNLVSGGTCKDVIGFNTLIDGYCKAGEMSLALDLVERMRKEG 177

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISE---LGEAPPFKIQVSL---------CD 510
                 +Y  L++   +    ++A+ LL +ISE   + ++  F I   +          D
Sbjct: 178 LLSDIVSYNTLINGFCKRGEYDKAKSLLHEISESRGVKDSVFFNIDDRIKKDDNLNLEAD 237

Query: 511 MYARAGIEKKALQALGFLEAKK--EQMG-----PD--DFERIINGLLAGGFLQDAQRVHG 561
           +     I     +  G  EA+   E+M      PD   +  I+NGL   G L +AQ +  
Sbjct: 238 LITYTTIISTYCKQHGLEEARALYEEMIINGFLPDVVTYSSIVNGLCKDGRLSEAQELLR 297

Query: 562 LMEAQGFAASERLKVALISS 581
            M+  G   +      LI S
Sbjct: 298 EMKKMGVDPNHVAYTTLIDS 317


>gi|224111362|ref|XP_002315826.1| predicted protein [Populus trichocarpa]
 gi|222864866|gb|EEF01997.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 141/305 (46%), Gaps = 4/305 (1%)

Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338
             + M   GI P + T  +++    K G++  A+  FE ++  G  PD   YN++I  Y 
Sbjct: 119 FFRDMVGAGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTLIDGYG 178

Query: 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398
             G     + L + M   G E     Y AL+ SF +   +  A +    M+ ++ +P + 
Sbjct: 179 KIGLLDESVCLFEEMKFMGCEPDVITYNALINSFCKFKGMLRAFEFFREMKDKDLKPNVI 238

Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
           S + L++A  + G    A   F  M R+G  P++   +S+I A  K   L +A  L  E+
Sbjct: 239 SYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGNLGEAFMLADEM 298

Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
            ++  +    TYT L+D L    ++NEAE+L   + + G  P  +   +L   + +    
Sbjct: 299 LQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIKVRSM 358

Query: 519 KKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKV 576
            KA++   F E +++ + PD   +  I+ GL +   L++ + +   M+  G  A+  +  
Sbjct: 359 DKAMEL--FNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGANPVIYT 416

Query: 577 ALISS 581
            L+ +
Sbjct: 417 TLMDA 421



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 72/324 (22%), Positives = 147/324 (45%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           ++  Y+ LID + K   L+++  + ++M   G  PD++T   L++ + K   + RA E F
Sbjct: 166 DIVTYNTLIDGYGKIGLLDESVCLFEEMKFMGCEPDVITYNALINSFCKFKGMLRAFEFF 225

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             ++    +P+   Y+++I A    G  ++ +     M   G+  +E  Y +L+ +  + 
Sbjct: 226 REMKDKDLKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKA 285

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G++  A  + + M  E     + + T L++   + G  ++A   F  M + G  P+ +  
Sbjct: 286 GNLGEAFMLADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAY 345

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I  + K   +DKA+ L  E+ +   +P    +  +V  L     + E + ++ ++ E
Sbjct: 346 TALIHGHIKVRSMDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKE 405

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
            G      I  +L D Y +AG   +A+  L  +     ++    F  +I+GL   G +Q+
Sbjct: 406 SGIGANPVIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKRGLVQE 465

Query: 556 AQRVHGLMEAQGFAASERLKVALI 579
           A    G M       +  +  ALI
Sbjct: 466 AIYYFGRMPDHDLQPNVAVYTALI 489



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/327 (21%), Positives = 141/327 (43%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ LI++  K   +  A    ++M +  + P++++ + L+    K G +  A + F
Sbjct: 201 DVITYNALINSFCKFKGMLRAFEFFREMKDKDLKPNVISYSTLIDALCKEGMMQMAIKFF 260

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G  P++  Y+S+I A   AG       L D M+   ++ +   Y  LL    + 
Sbjct: 261 VDMTRVGLLPNEFTYSSLIDANCKAGNLGEAFMLADEMLQEHVDLNIVTYTTLLDGLCEE 320

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A ++   M      P L++ T L+  + +    D+A   F+ M     KPD    
Sbjct: 321 GMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIKVRSMDKAMELFNEMREKDIKPDILLW 380

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            +++     ++ L++   ++ E+++ G    P  YT L+D   +     EA  LL ++ +
Sbjct: 381 GTIVWGLCSESKLEECKIIMTEMKESGIGANPVIYTTLMDAYFKAGNRTEAINLLEEMRD 440

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
           LG         +L D   + G+ ++A+   G +     Q     +  +I+GL     + D
Sbjct: 441 LGTEVTVVTFCALIDGLCKRGLVQEAIYYFGRMPDHDLQPNVAVYTALIDGLCKNNCIGD 500

Query: 556 AQRVHGLMEAQGFAASERLKVALISSQ 582
           A+++   M+ +     +    A+I   
Sbjct: 501 AKKLFDEMQDKNMIPDKIAYTAMIDGN 527



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 131/283 (46%), Gaps = 6/283 (2%)

Query: 218 LQPSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
           L P+   + +L+D   +  N    F +A+ +L +E    N+  Y+ L+D   +E  + +A
Sbjct: 268 LLPNEFTYSSLIDANCKAGNLGEAFMLADEML-QEHVDLNIVTYTTLLDGLCEEGMMNEA 326

Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
           E + + M + G+ P++   T L+H + K  ++D+A E F  +R    +PD  ++ +++  
Sbjct: 327 EELFRAMGKAGVTPNLQAYTALIHGHIKVRSMDKAMELFNEMREKDIKPDILLWGTIVWG 386

Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
             +  + +    ++  M  SGI  +  IY  L+ ++ + G+   A  +   MR    + T
Sbjct: 387 LCSESKLEECKIIMTEMKESGIGANPVIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEVT 446

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           + +   L++   + G   +A   F  M     +P+     ++I    K N +  A  L  
Sbjct: 447 VVTFCALIDGLCKRGLVQEAIYYFGRMPDHDLQPNVAVYTALIDGLCKNNCIGDAKKLFD 506

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLIN--EAEQLLGKISELG 497
           E++     P    YT ++D  G L+  N  EA  +  K+ E+G
Sbjct: 507 EMQDKNMIPDKIAYTAMID--GNLKHGNFQEALNMRNKMMEMG 547



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 103/245 (42%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N++ Y+ LI  H K   ++ A  +  +M E  I PDI+    +V        L+  K   
Sbjct: 341 NLQAYTALIHGHIKVRSMDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIM 400

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             ++  G   +  +Y +++ AY  AG     ++L++ M   G E +   + AL+    + 
Sbjct: 401 TEMKESGIGANPVIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKR 460

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G V+ A      M   + QP +   T L++   +      A+  FD M      PD    
Sbjct: 461 GLVQEAIYYFGRMPDHDLQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNMIPDKIAY 520

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            +MI    K     +ALN+  ++ + G E     YT LV  L +   + +A + L ++  
Sbjct: 521 TAMIDGNLKHGNFQEALNMRNKMMEMGIELDLYAYTSLVWGLSQCGQVQQARKFLAEMIG 580

Query: 496 LGEAP 500
            G  P
Sbjct: 581 KGIIP 585



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/297 (19%), Positives = 121/297 (40%)

Query: 286 NGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKL 345
           N  VP       L  +  + G L+ A + F  +      P  +  N+ +     AG+  L
Sbjct: 56  NVCVPGFGVFDALFSVLVELGMLEAAGQCFLRMTKFRVLPKARSCNAFLHRLSKAGEGDL 115

Query: 346 GMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVE 405
                  M+ +GI  +   Y  ++    + GD+  A  +   M+     P + +   L++
Sbjct: 116 SRDFFRDMVGAGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTLID 175

Query: 406 AYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
            YG+ G  D++   F+ M  +G +PD     ++I ++ K   + +A     E++    +P
Sbjct: 176 GYGKIGLLDESVCLFEEMKFMGCEPDVITYNALINSFCKFKGMLRAFEFFREMKDKDLKP 235

Query: 466 GPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
              +Y+ L+D L +  ++  A +    ++ +G  P      SL D   +AG   +A    
Sbjct: 236 NVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGNLGEAFMLA 295

Query: 526 GFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQ 582
             +  +   +    +  +++GL   G + +A+ +   M   G   + +   ALI   
Sbjct: 296 DEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHGH 352



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 79/185 (42%), Gaps = 19/185 (10%)

Query: 221 SRIDWINLLDRLREQNTQL-YFKVAELV------------------LSEESFQTNVRDYS 261
           +R + INLL+ +R+  T++       L+                  + +   Q NV  Y+
Sbjct: 427 NRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAIYYFGRMPDHDLQPNVAVYT 486

Query: 262 KLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSH 321
            LID   K NC+ DA+++  +M +  ++PD +  T ++    K GN   A      +   
Sbjct: 487 ALIDGLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTAMIDGNLKHGNFQEALNMRNKMMEM 546

Query: 322 GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGA 381
           G + D   Y S++      GQ +     +  MI  GI   E +   LLR   + G++  A
Sbjct: 547 GIELDLYAYTSLVWGLSQCGQVQQARKFLAEMIGKGIIPDETLCTRLLRKHYELGNIDEA 606

Query: 382 GQITN 386
            ++ N
Sbjct: 607 IELQN 611



 Score = 47.4 bits (111), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 51/250 (20%), Positives = 109/250 (43%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E+  + ++  +  ++     E+ LE+ + I+ +M E+GI  + V  T L+  Y KAGN
Sbjct: 368 MREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGANPVIYTTLMDAYFKAGN 427

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
              A    E +R  G +     + ++I      G  +  +     M    ++ +  +Y A
Sbjct: 428 RTEAINLLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAIYYFGRMPDHDLQPNVAVYTA 487

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    +   +  A ++ + M+ +   P   + T +++   + G+  +A +  + M+ +G
Sbjct: 488 LIDGLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTAMIDGNLKHGNFQEALNMRNKMMEMG 547

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            + D     S++    +   + +A   L E+   G  P     T L+     L  I+EA 
Sbjct: 548 IELDLYAYTSLVWGLSQCGQVQQARKFLAEMIGKGIIPDETLCTRLLRKHYELGNIDEAI 607

Query: 488 QLLGKISELG 497
           +L  ++ E G
Sbjct: 608 ELQNELVEKG 617


>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
 gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats [Arabidopsis thaliana]
 gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 632

 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 107/251 (42%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E     NV  +S LIDA  KE  L +AE++  +M +  I PDI T + L++ +     LD
Sbjct: 321 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 380

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            AK  FE + S    P+   Y+++I  +  A + + GM L   M   G+  +   Y  L+
Sbjct: 381 EAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLI 440

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
             F Q  D   A  +   M      P + +  +L++   + G   +A   F+Y+ R   +
Sbjct: 441 HGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTME 500

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD      MI    K   ++    L   L   G  P    Y  ++    R     EA+ L
Sbjct: 501 PDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSL 560

Query: 490 LGKISELGEAP 500
           L K+ E G  P
Sbjct: 561 LKKMKEDGPLP 571



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 82/395 (20%), Positives = 166/395 (42%), Gaps = 24/395 (6%)

Query: 197 KILSLEKEEDPSPLLAEWKELLQPSRI-DWINLLDRLREQNTQ--------------LYF 241
           K++ L  E D   L +         RI D + L+D++ E   +              L+ 
Sbjct: 143 KMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHN 202

Query: 242 KVAELV-----LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTST 296
           K +E V     + +   Q ++  Y  +++   K   ++ A  +LKKM +  I  D+V   
Sbjct: 203 KASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYN 262

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
            ++    K  ++D A   F  + + G +PD   Y+S+I    N G+      L+  MI  
Sbjct: 263 TIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIER 322

Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
            I  +   + AL+ +F + G +  A ++ + M      P + + + L+  +      D+A
Sbjct: 323 KINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA 382

Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476
           +  F+ MI     P+    +++I  + K   +++ + L  E+ + G      TYT L+  
Sbjct: 383 KHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHG 442

Query: 477 LGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG 536
             + +  + A+ +  ++  +G  P       L D   + G   KA+    +L+  +  M 
Sbjct: 443 FFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQ--RSTME 500

Query: 537 PD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
           PD   +  +I G+   G ++D   +   +  +G +
Sbjct: 501 PDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVS 535



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/274 (21%), Positives = 118/274 (43%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +  +  + +V  YS LI          DA R+L  M E  I P++VT + L+  + K G 
Sbjct: 284 MDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGK 343

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L  A++ ++ +      PD   Y+S+I  +    +      + ++MI+     +   Y  
Sbjct: 344 LVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYST 403

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L++ F +   V    ++   M          + T L+  + QA D D A+  F  M+ +G
Sbjct: 404 LIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVG 463

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P+      ++    K   L KA+ +   L++   EP   TY ++++ + +   + +  
Sbjct: 464 VHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGW 523

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKA 521
           +L   +S  G +P      ++   + R G +++A
Sbjct: 524 ELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEA 557



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 118/262 (45%), Gaps = 8/262 (3%)

Query: 221 SRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERIL 280
           S I+   + DRL E          EL++S++ F  NV  YS LI    K   +E+   + 
Sbjct: 368 SLINGFCMHDRLDEAKHMF-----ELMISKDCFP-NVVTYSTLIKGFCKAKRVEEGMELF 421

Query: 281 KKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNA 340
           ++M++ G+V + VT T L+H + +A + D A+  F+ + S G  P+   YN ++      
Sbjct: 422 REMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKN 481

Query: 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
           G+    M + + +  S +E     Y  ++    + G V    ++   + ++   P + + 
Sbjct: 482 GKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAY 541

Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
             ++  + + G  ++A S    M   G  P+     ++I A  +    + +  L+ E+  
Sbjct: 542 NTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRS 601

Query: 461 DGFEPGPATYTVLVDWL--GRL 480
            GF    +T  ++ + L  GRL
Sbjct: 602 CGFAGDASTIGLVTNMLHDGRL 623



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/305 (19%), Positives = 125/305 (40%), Gaps = 35/305 (11%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           ++ +++KL+ A AK N  E    + ++M   GI  D+ T ++ ++ + +   L  A    
Sbjct: 82  SIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVL 141

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G++PD    +S++  Y ++ +    ++LVD M+  G                  
Sbjct: 142 AKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMG------------------ 183

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
                            ++P   + T L+          +A +  D M++ G +PD    
Sbjct: 184 -----------------YKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTY 226

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            +++    K+  +D AL+LL ++EK   E     Y  ++D L + + +++A  L  ++  
Sbjct: 227 GTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDN 286

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
            G  P      SL       G    A + L  +  +K       F  +I+  +  G L +
Sbjct: 287 KGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVE 346

Query: 556 AQRVH 560
           A++++
Sbjct: 347 AEKLY 351



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 74/346 (21%), Positives = 143/346 (41%), Gaps = 26/346 (7%)

Query: 225 WINLLDRLREQNTQLYFKVAELV-LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKM 283
           +IN   R     +QL   +A L  + +  ++ ++   S L++ +     + DA  ++ +M
Sbjct: 124 FINCFCR----RSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQM 179

Query: 284 NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343
            E G  PD  T T L+H          A    + +   G QPD   Y +++      G  
Sbjct: 180 VEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDI 239

Query: 344 KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403
            L +SL+  M    IE    IY  ++    +   +  A  +   M  +  +P + + + L
Sbjct: 240 DLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSL 299

Query: 404 VEA---YGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
           +     YG+  D  +  S+   MI     P+    +++I A+ K+  L +A  L  E+ K
Sbjct: 300 ISCLCNYGRWSDASRLLSD---MIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIK 356

Query: 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKK 520
              +P   TY+ L++       ++EA+ +            F++ +S  D +        
Sbjct: 357 RSIDPDIFTYSSLINGFCMHDRLDEAKHM------------FELMISK-DCFPNVVTYST 403

Query: 521 ALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQ 566
            ++  GF +AK+ + G + F  +    L G  +     +HG  +A+
Sbjct: 404 LIK--GFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQAR 447



 Score = 45.8 bits (107), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 81/185 (43%)

Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
           L + ++ +  + +      A +    M++LG++PD    +S++  Y     +  A+ L+ 
Sbjct: 118 LYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVD 177

Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
           ++ + G++P   T+T L+  L      +EA  L+ ++ + G  P      ++ +   + G
Sbjct: 178 QMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRG 237

Query: 517 IEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKV 576
               AL  L  +E  K +     +  II+GL     + DA  +   M+ +G         
Sbjct: 238 DIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYS 297

Query: 577 ALISS 581
           +LIS 
Sbjct: 298 SLISC 302



 Score = 44.3 bits (103), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 40/225 (17%), Positives = 88/225 (39%), Gaps = 20/225 (8%)

Query: 169 AEKIHERGEMILPEEPKPITGKCKLITDKILSLEKEEDPSPLLAEWKELL----QPSRID 224
           A+++ E  E+      + + G     T  I    +  D       +K+++     P+ + 
Sbjct: 411 AKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILT 470

Query: 225 WINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMN 284
           +  LLD L +        V    L   + + ++  Y+ +I+   K   +ED   +   ++
Sbjct: 471 YNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLS 530

Query: 285 ENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPK 344
             G+ P+++    ++  + + G+ + A    + ++  G  P+   YN++I A +  G  +
Sbjct: 531 LKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDRE 590

Query: 345 LGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389
               L+  M                RS    GD    G +TN++ 
Sbjct: 591 ASAELIKEM----------------RSCGFAGDASTIGLVTNMLH 619


>gi|115434588|ref|NP_001042052.1| Os01g0153200 [Oryza sativa Japonica Group]
 gi|113531583|dbj|BAF03966.1| Os01g0153200 [Oryza sativa Japonica Group]
          Length = 1139

 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 84/338 (24%), Positives = 145/338 (42%), Gaps = 33/338 (9%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           ++E     N   ++ LI+   K+  +++A R+  KM ++ ++P+ VT  V++  Y   GN
Sbjct: 469 MAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGN 528

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           + +A + ++ +   G +PD   Y S+I                 + +TSG+ ++ E    
Sbjct: 529 IRKAFQLYDQMVEMGLKPDNYTYRSLISG---------------LCLTSGVSKANEFVAD 573

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPT---------------LESCTLLVEAYGQAGD 412
           L  S+A   +      +    R   F  T               L S T++V A  +  D
Sbjct: 574 LENSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHD 633

Query: 413 PDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTV 472
            +++   F  M   G KPDD     MI A  K+  + +ALN   ++  DG+ P   T+TV
Sbjct: 634 KEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTV 693

Query: 473 LVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVS-LCDMYARAGIEKKALQALGFLEAK 531
           L++ L +   +  AE LL K    G   P K   +   D +A  G  +KA + L     +
Sbjct: 694 LINNLCKSGYLGSAE-LLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKA-KDLHSAMLQ 751

Query: 532 KEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
                   F  +I GL   G +Q+A  +   +   GF+
Sbjct: 752 GHLASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFS 789



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 85/361 (23%), Positives = 146/361 (40%), Gaps = 15/361 (4%)

Query: 186 PITGKCKLITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKVA 244
           P    C  + D++   E  E+   L  +  +L + P+   +  L+D+L +      F  A
Sbjct: 301 PSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNER---FDDA 357

Query: 245 ELVLSE---ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM 301
           + +  E      + N   Y+ LI A  K   +EDA  +  KM + GI   +     L++ 
Sbjct: 358 DRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLING 417

Query: 302 YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS 361
           Y K G+LDRA+     +   G  P    Y+ +I      G     M L   M   GI  +
Sbjct: 418 YCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWN 477

Query: 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421
              + AL+  F +   +  A ++ + M      P   +  +++E Y   G+  +A   +D
Sbjct: 478 NYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYD 537

Query: 422 YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ 481
            M+ +G KPD+    S+I+     + + KA   + +LE         + T L+    R  
Sbjct: 538 QMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREG 597

Query: 482 LINEAEQLLGKISELG---EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
              E   L  +++  G   +   F I V     YA      K    + F E K++ + PD
Sbjct: 598 RFTETYHLWDEMAVRGVKLDLVSFTIIV-----YAALKQHDKEKSCVLFREMKEQGVKPD 652

Query: 539 D 539
           D
Sbjct: 653 D 653



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 130/307 (42%), Gaps = 4/307 (1%)

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A  +  KM ++G+  D    T  +  Y ++ NLD A+     + S G +     YN ++ 
Sbjct: 182 ARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRMESEGVKASAVPYNVLMY 241

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
                 + +  + + ++M+  G+   E  Y  L+  F +  ++  A +IT+ M    F P
Sbjct: 242 GLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVP 301

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
           +  +C+ +++   +    ++A S    +  LG  P+     ++I    K    D A  L 
Sbjct: 302 SEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLF 361

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
            E+   G EP   TY +L+  L +  +I +A  L  K+ + G         SL + Y + 
Sbjct: 362 KEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQ 421

Query: 516 GIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASER 573
           G   +A   L  +   KE + P    +  +I GL   G L     +H  M  +G A +  
Sbjct: 422 GSLDRARGLLSGM--VKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNY 479

Query: 574 LKVALIS 580
              ALI+
Sbjct: 480 TFTALIN 486



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/311 (19%), Positives = 131/311 (42%), Gaps = 9/311 (2%)

Query: 242 KVAELVLSEESFQTNVRDYS--KLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLV 299
           K  E V   E+    + ++S   L+    +E    +   +  +M   G+  D+V+ T++V
Sbjct: 566 KANEFVADLENSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIV 625

Query: 300 HMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
           +   K  + +++   F  ++  G +PD   Y  MI A          ++  D M+  G  
Sbjct: 626 YAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYS 685

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
            +   +  L+ +  + G +  A  +   M      P   +    ++ +   GD ++A+  
Sbjct: 686 PNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDL 745

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
              M++ GH         +I    K   + +A++L+ ++ + GF P   +Y+ ++  L +
Sbjct: 746 HSAMLQ-GHLASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCK 804

Query: 480 LQLINEAEQLLGKISELGEAP---PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG 536
           +  IN+A +L  ++   G  P    + I +  C+++   G   KAL     +     Q  
Sbjct: 805 MGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVH---GESDKALGIYTNMIRSGVQPN 861

Query: 537 PDDFERIINGL 547
            D +  +++G+
Sbjct: 862 WDTYRALLSGI 872



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 102/240 (42%), Gaps = 2/240 (0%)

Query: 193 LITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEE 251
           +I    L    +E    L  E KE  ++P  I +  ++D L ++   +        +  +
Sbjct: 623 IIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVD 682

Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311
            +  N   ++ LI+   K   L  AE + K+M    ++P+  T    +  ++  G++++A
Sbjct: 683 GYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKA 742

Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
           K+   S    G       +N +I     AG+ +  + L+  +  SG       Y  ++  
Sbjct: 743 KD-LHSAMLQGHLASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHE 801

Query: 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
             + GD+  A ++ N M  +  +P + +  + +      G+ D+A   +  MIR G +P+
Sbjct: 802 LCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGVQPN 861


>gi|38567720|emb|CAE76009.1| B1358B12.18 [Oryza sativa Japonica Group]
 gi|90265197|emb|CAH67636.1| B0812A04.6 [Oryza sativa Indica Group]
          Length = 609

 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 114/253 (45%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +SE     +V  Y  LI    +   +EDA  + +KM   G+ P+ V  T+L+  + K G+
Sbjct: 301 MSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGD 360

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            +   E    +R  G +PD   YN+++     A   K    +V  M ++G+      Y  
Sbjct: 361 AETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTT 420

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+  + +  ++  A +I   M  E       + T L+    +AG    A      M+  G
Sbjct: 421 LIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAG 480

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            +PD+     +I A+ +K  +   L LL E++  G +PG  TY V+++   +L  +  A+
Sbjct: 481 LEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNAD 540

Query: 488 QLLGKISELGEAP 500
            LL  +  +G +P
Sbjct: 541 MLLNAMINIGVSP 553



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/309 (21%), Positives = 125/309 (40%), Gaps = 35/309 (11%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +     +  V  ++ +I    +   L+ AE + ++M+E G+ PD+ T   L+    + G 
Sbjct: 266 MQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGR 325

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           ++ A+  FE +   G +P+  V+  +I A+   G  +  + L   M   G+      Y A
Sbjct: 326 IEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNA 385

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++    +  D++ A  I   MR                                     G
Sbjct: 386 IVNGLCRARDLKSASGIVVEMR-----------------------------------SAG 410

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            +PD     ++I  Y K+  LD A+ +   +  +G      TYT L+  L +     +AE
Sbjct: 411 LRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAE 470

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
           ++LG++ E G  P       + D + R G  K  L+ L  ++ K  + G   +  I+NG 
Sbjct: 471 RVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGF 530

Query: 548 LAGGFLQDA 556
              G +++A
Sbjct: 531 CKLGQMKNA 539



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 111/251 (44%), Gaps = 9/251 (3%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERIL---KKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
            + N   ++ LIDAH K+    DAE +L   ++M E G+ PD VT   +V+   +A +L 
Sbjct: 341 MKPNAVVFTILIDAHCKKG---DAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLK 397

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A      +RS G +PD   Y ++I  Y    +  + M +   M+  G+   E  Y AL+
Sbjct: 398 SASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALI 457

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
              ++ G    A ++   M     +P   + T++++A+ + GD          M   G K
Sbjct: 458 SGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRK 517

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW---LGRLQLINEA 486
           P       ++  + K   +  A  LL  +   G  P   TY +L+D     G++  I E 
Sbjct: 518 PGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHCKHGKVTDIEEL 577

Query: 487 EQLLGKISELG 497
           +   G + +LG
Sbjct: 578 KSAKGTVPDLG 588



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 127/295 (43%), Gaps = 14/295 (4%)

Query: 285 ENGIVPDIVTSTVL-------VHMYSKAGNLDRAKEAFES------LRSHGFQPDKKVYN 331
           E G++PD  T  +L       +   S  G + R   A E+      L   G  P+ K++N
Sbjct: 185 EEGLLPDACTLVLLALRRGIRLEPTSCTGLMSRFPTAPEACAFYLQLLDAGLPPEAKLFN 244

Query: 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391
            ++   V  G+     ++ D M + G+ R+   +  ++    + GD+ GA  +   M   
Sbjct: 245 VLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRRMSEA 304

Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
              P + +   L++   + G  + AR  F+ M   G KP+      +I A+ KK   +  
Sbjct: 305 GVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETM 364

Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
           L L  E+ + G  P   TY  +V+ L R + +  A  ++ ++   G  P      +L D 
Sbjct: 365 LELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDG 424

Query: 512 YARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHG-LMEA 565
           Y +      A++    + A+   +    +  +I+GL   G   DA+RV G +MEA
Sbjct: 425 YCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEA 479



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 88/185 (47%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E   + +   Y+ +++   +   L+ A  I+ +M   G+ PD VT T L+  Y K   
Sbjct: 371 MRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEE 430

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           LD A E  +++ + G   D+  Y ++I     AG+      ++  M+ +G+E     Y  
Sbjct: 431 LDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTM 490

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++ +F + GDV+   ++   M+ +  +P + +  +++  + + G    A    + MI +G
Sbjct: 491 VIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIG 550

Query: 428 HKPDD 432
             PDD
Sbjct: 551 VSPDD 555



 Score = 47.4 bits (111), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 47/95 (49%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E   + +   Y+ +IDA  ++  ++   R+LK+M   G  P +VT  V+++ + K G 
Sbjct: 476 MMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQ 535

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
           +  A     ++ + G  PD   YN ++  +   G+
Sbjct: 536 MKNADMLLNAMINIGVSPDDITYNILLDGHCKHGK 570


>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
 gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
          Length = 500

 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 133/308 (43%), Gaps = 6/308 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  ++ ++   A+ N +E A  + + M E+G  PD V+  +L+H  +K G LD + +  
Sbjct: 44  DVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKIL 103

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G  P  + Y+S++ A   A +     SL D MI  G      ++  L+    Q 
Sbjct: 104 SEMVMRGQTPSMQAYSSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQA 163

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G V+ A +    M     QP +    +L+     +G  +QA + F  M      PD    
Sbjct: 164 GKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTY 223

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            +++ A  K   +++   L   +   G+ P   T++ L+  L R   + +A ++ G + E
Sbjct: 224 NTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLE 283

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD---FERIINGLLAGGF 552
            G  P      +L     RA   +K +QA    E   +   P D   +  +I G    G 
Sbjct: 284 AGCKPNKYTYTTLISGLCRA---EKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGS 340

Query: 553 LQDAQRVH 560
           + +A++++
Sbjct: 341 MDEAEKLY 348



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 127/288 (44%), Gaps = 1/288 (0%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           ++DA    K+M ++G  P++    VL+H    +G L++A   F  ++SH   PD   YN+
Sbjct: 166 VKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNT 225

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           ++ A   A + + G  L + M  +G   +   +  L+    + G++  A ++   M    
Sbjct: 226 LLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAG 285

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
            +P   + T L+    +A    QAR  F+ M +    PD     S+IA Y K+  +D+A 
Sbjct: 286 CKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAE 345

Query: 453 NLLLELEKD-GFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
            L  E+    G +P   T+  L+D   +L  +  A +L+ ++   G A        L   
Sbjct: 346 KLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRILIAG 405

Query: 512 YARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
            +RA    +AL+    +  KK  + P      + GL   G +  A  V
Sbjct: 406 LSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAV 453



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/300 (21%), Positives = 132/300 (44%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + +++   NV  YS +I +  KE   E++ ++L++M   G  PD+     ++  ++++ N
Sbjct: 1   MRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNN 60

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +++A+E ++ +   G++PD   Y+ +I      G+    + ++  M+  G   S + Y +
Sbjct: 61  MEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSS 120

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+R+ A+   V  A  + + M      P       L+    QAG    A   F  M + G
Sbjct: 121 LVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHG 180

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            +P+      ++        L++A  L  E++     P   TY  L+D + + + + E  
Sbjct: 181 CQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGC 240

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
           +L   +   G  P      +L     R G  +KAL+  G +     +     +  +I+GL
Sbjct: 241 KLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGL 300



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 121/295 (41%), Gaps = 16/295 (5%)

Query: 205 EDPSPLLAEWK-ELLQPSRIDWINLLD-----RLREQNTQLYFKVAELVLSEESFQTNVR 258
           E  + L AE K     P  + +  LLD     R  E+  +L+       +    +  NV 
Sbjct: 202 EQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLF-----EAMRAAGYVPNVI 256

Query: 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318
            +S LI    +   LE A  +   M E G  P+  T T L+    +A  + +A+E FE +
Sbjct: 257 TFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKM 316

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV-DMMITSGIERSEEIYLALLRSFAQCGD 377
                 PD   YNS+I  Y   G       L  +M   +G++ +   +  L+  F + G 
Sbjct: 317 TQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGK 376

Query: 378 VRGAGQITNIMRIEEFQPTLESCT--LLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           +  A ++   M  +      +SCT  +L+    +A   D+A   +  M       D    
Sbjct: 377 LGRANELVAEMGTKGLAA--DSCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSC 434

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
            S +    K   +D+A  +     K G  P P T+ +L + L +L  + +A++L+
Sbjct: 435 VSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKLM 489


>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
 gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
          Length = 841

 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 124/260 (47%), Gaps = 2/260 (0%)

Query: 216 ELLQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           +L+QP  + +  ++D + ++++    F +    +S+  F  +V  Y+ LI        L+
Sbjct: 327 KLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFP-DVFTYNALISGFCIVGKLK 385

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           DA  +  KM    I+PD+ T ++LV  + K GN+  AK     +     +PD   Y+S++
Sbjct: 386 DAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLM 445

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
             Y    +     S+ + M   G+  + + Y  ++  F +   V  A ++   M  ++  
Sbjct: 446 DGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIF 505

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P + + + L++   ++G    A    D M   G +PD     S++ A  KK+ +DKA+ L
Sbjct: 506 PDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITL 565

Query: 455 LLELEKDGFEPGPATYTVLV 474
           L +L+  G  P   TYT+LV
Sbjct: 566 LTKLKGQGIRPDMNTYTILV 585



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 113/228 (49%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++ ++S + +V  YS L+D +   N +  AE I   M+  G+  ++ +  ++++ + K  
Sbjct: 428 MMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIK 487

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
            +D A + F+ +      PD   Y+S+I     +G+    + LVD M   G +     Y 
Sbjct: 488 MVDEAMKLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYN 547

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
           ++L +  +   V  A  +   ++ +  +P + + T+LV+   Q+G  + AR  F+ ++  
Sbjct: 548 SILDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVK 607

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
           G+  D      MI  +  K L D+AL LL ++E++G  P   TY +++
Sbjct: 608 GYNLDVYAYTVMIQGFCDKGLFDEALALLSKMEENGCIPDAKTYEIII 655



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/316 (21%), Positives = 143/316 (45%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F  +   Y  LI+   K    + A  +L++ +   + PD+V    ++    K  +++ A 
Sbjct: 294 FHLDQVSYGTLINGLCKVGETKAALELLRRNDGKLVQPDVVMYNTIIDGMCKDKHVNDAF 353

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           + +    S    PD   YN++I  +   G+ K  + L + M +  I      +  L+  F
Sbjct: 354 DLYSEKVSKRIFPDVFTYNALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGF 413

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + G+++ A  +  +M  +  +P + + + L++ Y    + ++A S F+ M   G   + 
Sbjct: 414 CKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANV 473

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
           +    MI  + K  ++D+A+ L  E+      P   TY+ L+D L +   I+ A +L+ +
Sbjct: 474 QSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDE 533

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
           +   G+ P      S+ D   +     KA+  L  L+ +  +   + +  ++ GL   G 
Sbjct: 534 MHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILVKGLCQSGK 593

Query: 553 LQDAQRVHGLMEAQGF 568
           L+DA++V   +  +G+
Sbjct: 594 LEDARKVFEDLLVKGY 609



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/314 (22%), Positives = 126/314 (40%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           Q +V  Y+ +ID   K+  + DA  +  +     I PD+ T   L+  +   G L  A +
Sbjct: 330 QPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALISGFCIVGKLKDAID 389

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            F  + S    PD   ++ ++  +   G  K   +++ MM+   I+     Y +L+  + 
Sbjct: 390 LFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYC 449

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
              +V  A  I N M        ++S  +++  + +    D+A   F  M      PD  
Sbjct: 450 LVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVI 509

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
             +S+I    K   +  AL L+ E+   G +P   TY  ++D L +   +++A  LL K+
Sbjct: 510 TYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKL 569

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFL 553
              G  P       L     ++G  + A +    L  K   +    +  +I G    G  
Sbjct: 570 KGQGIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGFCDKGLF 629

Query: 554 QDAQRVHGLMEAQG 567
            +A  +   ME  G
Sbjct: 630 DEALALLSKMEENG 643



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/354 (18%), Positives = 148/354 (41%), Gaps = 43/354 (12%)

Query: 257 VRDYSKLIDAH---AKENCLEDA-----ERILKKMNENGIVPDIVTSTVLVHMYSKAGNL 308
           +  +  LI+ H    K+ CL  +     E    K+ +NG  PD +T T  +  +   G +
Sbjct: 220 LHSFKILIEYHKTFIKQKCLLKSFEISIEYTPPKILKNGYEPDTITLTTFIKGFCLKGQI 279

Query: 309 DRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV----------DMM----I 354
            +A    + + + GF  D+  Y ++I      G+ K  + L+          D++    I
Sbjct: 280 HQALHFHDKVIAMGFHLDQVSYGTLINGLCKVGETKAALELLRRNDGKLVQPDVVMYNTI 339

Query: 355 TSGIERSEEI---------------------YLALLRSFAQCGDVRGAGQITNIMRIEEF 393
             G+ + + +                     Y AL+  F   G ++ A  + N M  +  
Sbjct: 340 IDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALISGFCIVGKLKDAIDLFNKMTSKNI 399

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
            P + + ++LV+ + + G+  +A++    M++   KPD    +S++  Y   N ++KA +
Sbjct: 400 IPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAES 459

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
           +   +   G      +Y ++++   ++++++EA +L  ++      P      SL D   
Sbjct: 460 IFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGLC 519

Query: 514 RAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
           ++G    AL+ +  +  + +Q     +  I++ L     +  A  +   ++ QG
Sbjct: 520 KSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQG 573


>gi|302143554|emb|CBI22115.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 130/272 (47%), Gaps = 7/272 (2%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y+ LI     +     A  + + M   G + D  T  +++   +K+G LD A + F+ ++
Sbjct: 200 YNSLITLFLNKGLPYKAFEVYESMEAAGCLLDGSTYELMIPSLAKSGRLDAAFKLFQEMK 259

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
               +P   V+ S++ +   AG+    M +   M   G+  S  +Y++L+ SF + G + 
Sbjct: 260 EKNLRPSFLVFASLVDSMGKAGRLDTSMKVYMEMQGFGLRPSATMYVSLIESFVKAGKLE 319

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A +I + M+   F+P     T++VE++ ++G  + A S F  M + G  P     + ++
Sbjct: 320 TALRIWDEMKKAGFRPNYGLYTMVVESHAKSGKLETAMSVFSDMEKAGFLPTPSTYSCLL 379

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
             +     +D A+ L   +   G  PG +TYT L+  L   +L++ A ++L ++  +G  
Sbjct: 380 EMHSASGQVDSAMKLYNSMTNAGLRPGLSTYTALLTLLANKKLVDVAAKVLLEMKAMG-- 437

Query: 500 PPFKIQVSLCD---MYARAGIEKKALQALGFL 528
             F + VS  D   +Y + G    AL+ L F+
Sbjct: 438 --FSVDVSASDVLMVYIKDGSVDLALRWLRFM 467



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 67/298 (22%), Positives = 131/298 (43%), Gaps = 1/298 (0%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           + D +  L   + NG V  ++    +V   +KA  L+ A   F+ ++  G + D   YNS
Sbjct: 144 VTDTDASLNSGDNNG-VSSVIACNQVVRDLAKAEKLEVAFCCFKKVQDSGCKIDTATYNS 202

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           +I  ++N G P     + + M  +G       Y  ++ S A+ G +  A ++   M+ + 
Sbjct: 203 LITLFLNKGLPYKAFEVYESMEAAGCLLDGSTYELMIPSLAKSGRLDAAFKLFQEMKEKN 262

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
            +P+      LV++ G+AG  D +   +  M   G +P      S+I ++ K   L+ AL
Sbjct: 263 LRPSFLVFASLVDSMGKAGRLDTSMKVYMEMQGFGLRPSATMYVSLIESFVKAGKLETAL 322

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
            +  E++K GF P    YT++V+   +   +  A  +   + + G  P       L +M+
Sbjct: 323 RIWDEMKKAGFRPNYGLYTMVVESHAKSGKLETAMSVFSDMEKAGFLPTPSTYSCLLEMH 382

Query: 513 ARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAA 570
           + +G    A++    +     + G   +  ++  L     +  A +V   M+A GF+ 
Sbjct: 383 SASGQVDSAMKLYNSMTNAGLRPGLSTYTALLTLLANKKLVDVAAKVLLEMKAMGFSV 440



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 121/266 (45%), Gaps = 6/266 (2%)

Query: 268 AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK 327
           AK   LE A    KK+ ++G   D  T   L+ ++   G   +A E +ES+ + G   D 
Sbjct: 173 AKAEKLEVAFCCFKKVQDSGCKIDTATYNSLITLFLNKGLPYKAFEVYESMEAAGCLLDG 232

Query: 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNI 387
             Y  MI +   +G+      L   M    +  S  ++ +L+ S  + G +  + ++   
Sbjct: 233 STYELMIPSLAKSGRLDAAFKLFQEMKEKNLRPSFLVFASLVDSMGKAGRLDTSMKVYME 292

Query: 388 MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447
           M+    +P+      L+E++ +AG  + A   +D M + G +P+      ++ ++ K   
Sbjct: 293 MQGFGLRPSATMYVSLIESFVKAGKLETALRIWDEMKKAGFRPNYGLYTMVVESHAKSGK 352

Query: 448 LDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVS 507
           L+ A+++  ++EK GF P P+TY+ L++       ++ A +L   ++  G  P      +
Sbjct: 353 LETAMSVFSDMEKAGFLPTPSTYSCLLEMHSASGQVDSAMKLYNSMTNAGLRPGLSTYTA 412

Query: 508 LCDMYARAGIEKKA------LQALGF 527
           L  + A   +   A      ++A+GF
Sbjct: 413 LLTLLANKKLVDVAAKVLLEMKAMGF 438



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/215 (21%), Positives = 94/215 (43%), Gaps = 1/215 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E++ + +   ++ L+D+  K   L+ + ++  +M   G+ P       L+  + KAG 
Sbjct: 258 MKEKNLRPSFLVFASLVDSMGKAGRLDTSMKVYMEMQGFGLRPSATMYVSLIESFVKAGK 317

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L+ A   ++ ++  GF+P+  +Y  ++ ++  +G+ +  MS+   M  +G   +   Y  
Sbjct: 318 LETALRIWDEMKKAGFRPNYGLYTMVVESHAKSGKLETAMSVFSDMEKAGFLPTPSTYSC 377

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           LL   +  G V  A ++ N M     +P L + T L+         D A      M  +G
Sbjct: 378 LLEMHSASGQVDSAMKLYNSMTNAGLRPGLSTYTALLTLLANKKLVDVAAKVLLEMKAMG 437

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
               D   + ++  Y K   +D AL  L  +   G
Sbjct: 438 FSV-DVSASDVLMVYIKDGSVDLALRWLRFMGSSG 471


>gi|15228936|ref|NP_188942.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273922|sp|Q9LS88.1|PP250_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g23020
 gi|9294191|dbj|BAB02093.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643185|gb|AEE76706.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 842

 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 138/316 (43%), Gaps = 13/316 (4%)

Query: 260 YSKLIDAHAKENCLEDAERIL---KKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
           YS  IDA+ +   L +AER+    +++N+      ++   V++  Y  + + ++A E FE
Sbjct: 474 YSANIDAYGERGYLSEAERVFICCQEVNKR----TVIEYNVMIKAYGISKSCEKACELFE 529

Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
           S+ S+G  PDK  YN+++    +A  P  G   ++ M  +G       Y A++ SF + G
Sbjct: 530 SMMSYGVTPDKCTYNTLVQILASADMPHKGRCYLEKMRETGYVSDCIPYCAVISSFVKLG 589

Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
            +  A ++   M     +P +    +L+ A+   G+  QA S  + M   G   +     
Sbjct: 590 QLNMAEEVYKEMVEYNIEPDVVVYGVLINAFADTGNVQQAMSYVEAMKEAGIPGNSVIYN 649

Query: 437 SMIAAYGKKNLLDKA----LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
           S+I  Y K   LD+A      LL    K  + P   T   +++      ++ +AE +   
Sbjct: 650 SLIKLYTKVGYLDEAEAIYRKLLQSCNKTQY-PDVYTSNCMINLYSERSMVRKAEAIFDS 708

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
           + + GEA  F   + LC MY + G  ++A Q    +   K    P  +  ++      G 
Sbjct: 709 MKQRGEANEFTFAMMLC-MYKKNGRFEEATQIAKQMREMKILTDPLSYNSVLGLFALDGR 767

Query: 553 LQDAQRVHGLMEAQGF 568
            ++A      M + G 
Sbjct: 768 FKEAVETFKEMVSSGI 783



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/306 (22%), Positives = 126/306 (41%), Gaps = 43/306 (14%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  LID ++K      A   L KM++ G+ PD VT+ +++ MY KA    +A+E F+   
Sbjct: 225 YGTLIDVYSKGGLKVHALCWLGKMSKIGMQPDEVTTGIVLQMYKKAREFQKAEEFFKKWS 284

Query: 320 SHGFQPDKKV------YNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
               + D  V      YN+MI  Y  +GQ K        M+  GI  +   +  ++  + 
Sbjct: 285 CDENKADSHVCLSSYTYNTMIDTYGKSGQIKEASETFKRMLEEGIVPTTVTFNTMIHIYG 344

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
             G +   G++T++M+                                  ++L   PD R
Sbjct: 345 NNGQL---GEVTSLMKT---------------------------------MKLHCAPDTR 368

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
               +I+ + K N +++A     E++ DG +P P +Y  L+       ++ EAE L+ ++
Sbjct: 369 TYNILISLHTKNNDIERAGAYFKEMKDDGLKPDPVSYRTLLYAFSIRHMVEEAEGLIAEM 428

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFL 553
            +         Q +L  MY  A + +K+             M  + +   I+     G+L
Sbjct: 429 DDDNVEIDEYTQSALTRMYVEAEMLEKSWSWFKRFHVAG-NMSSEGYSANIDAYGERGYL 487

Query: 554 QDAQRV 559
            +A+RV
Sbjct: 488 SEAERV 493



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 70/318 (22%), Positives = 139/318 (43%), Gaps = 8/318 (2%)

Query: 246 LVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKA 305
            +  +E  +  V +Y+ +I A+      E A  + + M   G+ PD  T   LV + + A
Sbjct: 494 FICCQEVNKRTVIEYNVMIKAYGISKSCEKACELFESMMSYGVTPDKCTYNTLVQILASA 553

Query: 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
               + +   E +R  G+  D   Y ++I ++V  GQ  +   +   M+   IE    +Y
Sbjct: 554 DMPHKGRCYLEKMRETGYVSDCIPYCAVISSFVKLGQLNMAEEVYKEMVEYNIEPDVVVY 613

Query: 366 LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
             L+ +FA  G+V+ A      M+             L++ Y + G  D+A + +  +++
Sbjct: 614 GVLINAFADTGNVQQAMSYVEAMKEAGIPGNSVIYNSLIKLYTKVGYLDEAEAIYRKLLQ 673

Query: 426 LGHK---PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
             +K   PD   +  MI  Y +++++ KA  +   +++ G E    T+ +++    +   
Sbjct: 674 SCNKTQYPDVYTSNCMINLYSERSMVRKAEAIFDSMKQRG-EANEFTFAMMLCMYKKNGR 732

Query: 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--F 540
             EA Q+  ++ E+          S+  ++A  G  K+A++   F E     + PDD  F
Sbjct: 733 FEEATQIAKQMREMKILTDPLSYNSVLGLFALDGRFKEAVET--FKEMVSSGIQPDDSTF 790

Query: 541 ERIINGLLAGGFLQDAQR 558
           + +   L+  G  + A R
Sbjct: 791 KSLGTILMKLGMSKKAVR 808



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 88/409 (21%), Positives = 147/409 (35%), Gaps = 91/409 (22%)

Query: 238 QLYFKVAELVLSEESFQTNVRD--------------YSKLIDAHAKENCLEDAERILKKM 283
           Q+Y K  E   +EE F+    D              Y+ +ID + K   +++A    K+M
Sbjct: 265 QMYKKAREFQKAEEFFKKWSCDENKADSHVCLSSYTYNTMIDTYGKSGQIKEASETFKRM 324

Query: 284 NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343
            E GIVP  VT   ++H+Y   G L       ++++ H   PD + YN +I  +      
Sbjct: 325 LEEGIVPTTVTFNTMIHIYGNNGQLGEVTSLMKTMKLH-CAPDTRTYNILISLHTKNNDI 383

Query: 344 KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGA-GQITNI----MRIEEFQPTL- 397
           +   +    M   G++     Y  LL +F+    V  A G I  +    + I+E+  +  
Sbjct: 384 ERAGAYFKEMKDDGLKPDPVSYRTLLYAFSIRHMVEEAEGLIAEMDDDNVEIDEYTQSAL 443

Query: 398 ----------------------------ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
                                       E  +  ++AYG+ G   +A   F     +  +
Sbjct: 444 TRMYVEAEMLEKSWSWFKRFHVAGNMSSEGYSANIDAYGERGYLSEAERVFICCQEVNKR 503

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL--------GRLQ 481
                   MI AYG     +KA  L   +   G  P   TY  LV  L        GR  
Sbjct: 504 TVIEYNV-MIKAYGISKSCEKACELFESMMSYGVTPDKCTYNTLVQILASADMPHKGRCY 562

Query: 482 L---------------------------INEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514
           L                           +N AE++  ++ E    P   +   L + +A 
Sbjct: 563 LEKMRETGYVSDCIPYCAVISSFVKLGQLNMAEEVYKEMVEYNIEPDVVVYGVLINAFAD 622

Query: 515 AGIEKKALQALGFLEAKKEQMGPDD---FERIINGLLAGGFLQDAQRVH 560
            G      QA+ ++EA KE   P +   +  +I      G+L +A+ ++
Sbjct: 623 TG---NVQQAMSYVEAMKEAGIPGNSVIYNSLIKLYTKVGYLDEAEAIY 668



 Score = 47.4 bits (111), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 60/125 (48%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           + N   ++ ++  + K    E+A +I K+M E  I+ D ++   ++ +++  G    A E
Sbjct: 714 EANEFTFAMMLCMYKKNGRFEEATQIAKQMREMKILTDPLSYNSVLGLFALDGRFKEAVE 773

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            F+ + S G QPD   + S+    +  G  K  +  ++ +    I+R  E++++ L S  
Sbjct: 774 TFKEMVSSGIQPDDSTFKSLGTILMKLGMSKKAVRKIEEIRKKEIKRGLELWISTLSSLV 833

Query: 374 QCGDV 378
             GD 
Sbjct: 834 GIGDC 838


>gi|449461475|ref|XP_004148467.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Cucumis sativus]
          Length = 775

 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 164/369 (44%), Gaps = 22/369 (5%)

Query: 214 WKELL----QPSRIDWINL-LDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHA 268
           W E++     P+ + + N+ L   R+ N     KV + +L +  F  N   ++ L+D + 
Sbjct: 390 WDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEML-DNGFTPNAVTFTILMDGYF 448

Query: 269 KENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKK 328
           K+  +E+A  I  +M +  I+P   T  +++    KAG     ++ F    S GF P   
Sbjct: 449 KKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCM 508

Query: 329 VYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIM 388
            YN++I  ++  G   L  ++   M   GI  S   Y +L+  F +  ++  A ++ N M
Sbjct: 509 PYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDM 568

Query: 389 RIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLL 448
           + +  +  +++   L++ + +  D   A    + +   G  P+     SMI  +   N +
Sbjct: 569 KRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNV 628

Query: 449 DKALNLLLELEKDGFEPGPATYTVLVDWL---GRLQLINEAE-QLLGKISELGEAPPFKI 504
           ++A++L  ++  +G      TYT L+D L   GRL   ++   ++L K    G  P  + 
Sbjct: 629 EEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSK----GILPDDRA 684

Query: 505 QVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF----LQDAQRVH 560
              L +     G  + A + L  +  K   M P     I N L+AG F    LQ+A R+H
Sbjct: 685 HTVLINGLCNKGQFENARKILEDMNGK--NMIPSVL--IYNTLIAGHFKEGNLQEAFRLH 740

Query: 561 GLMEAQGFA 569
             M  +G  
Sbjct: 741 DEMLDRGLV 749



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 141/330 (42%), Gaps = 6/330 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ +I  H +++ +  A ++ K+M +NG  P+ VT T+L+  Y K G+++ A   F
Sbjct: 401 NVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIF 460

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             ++     P       +I     AG+   G  L +  ++ G   +   Y  ++  F + 
Sbjct: 461 HRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKE 520

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G++  A  +   M      P+  + T L++ + +  + D A    + M R G K D +  
Sbjct: 521 GNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAY 580

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I  + K+  +  A  LL EL   G  P    Y  ++     +  + EA  L  K+  
Sbjct: 581 GTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVN 640

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGF-LEAKKEQMGPDD--FERIINGLLAGGF 552
            G     K   SL D   ++G   + L A     E   + + PDD     +INGL   G 
Sbjct: 641 EGIPCDLKTYTSLIDGLLKSG---RLLYASDIHTEMLSKGILPDDRAHTVLINGLCNKGQ 697

Query: 553 LQDAQRVHGLMEAQGFAASERLKVALISSQ 582
            ++A+++   M  +    S  +   LI+  
Sbjct: 698 FENARKILEDMNGKNMIPSVLIYNTLIAGH 727



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 109/257 (42%), Gaps = 2/257 (0%)

Query: 220 PSRIDWINLLDR-LREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAER 278
           P+ + +  ++D  ++E N  L   V    + E     +   Y+ LID   K N ++ A +
Sbjct: 505 PTCMPYNTIIDGFIKEGNINLASNVYR-EMCEVGITPSTVTYTSLIDGFCKGNNIDLALK 563

Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338
           +L  M   G+  DI     L+  + K  ++  A E    LR  G  P++ +YNSMI  + 
Sbjct: 564 LLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFK 623

Query: 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398
           N    +  + L   M+  GI    + Y +L+    + G +  A  I   M  +   P   
Sbjct: 624 NMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDR 683

Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
           + T+L+      G  + AR   + M      P      ++IA + K+  L +A  L  E+
Sbjct: 684 AHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRLHDEM 743

Query: 459 EKDGFEPGPATYTVLVD 475
              G  P   TY +LV+
Sbjct: 744 LDRGLVPDNITYDILVN 760



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 70/359 (19%), Positives = 143/359 (39%), Gaps = 34/359 (9%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N+   + L+  +  +  L  A  ++ +++E+G+VP+ VT +VL+    K GN+++A E +
Sbjct: 262 NLAVATSLMKGYCMQGNLRSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFY 321

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNA----------------------------------G 341
             +++ G +      NS++  Y+                                    G
Sbjct: 322 SEMKTKGIRSSVYSLNSILEGYLKCQSWQNAFTMFNDALESGLANVFTFNTLLSWLCKEG 381

Query: 342 QPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCT 401
           +     +L D +I  GI  +   Y  ++    +  ++  A ++   M    F P   + T
Sbjct: 382 KMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFT 441

Query: 402 LLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD 461
           +L++ Y + GD + A S F  M      P D     +I    K     +  +L  +    
Sbjct: 442 ILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQ 501

Query: 462 GFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKA 521
           GF P    Y  ++D   +   IN A  +  ++ E+G  P      SL D + +      A
Sbjct: 502 GFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLA 561

Query: 522 LQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
           L+ L  ++ K  +M    +  +I+G      ++ A  +   +   G + +  +  ++I+
Sbjct: 562 LKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMIT 620



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 81/414 (19%), Positives = 149/414 (35%), Gaps = 69/414 (16%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGI------------------- 288
           +SE     N   YS LID   K   +E A     +M   GI                   
Sbjct: 289 ISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLKCQS 348

Query: 289 ---------------VPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
                          + ++ T   L+    K G ++ A   ++ + + G  P+   YN++
Sbjct: 349 WQNAFTMFNDALESGLANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNI 408

Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
           I+ +           +   M+ +G   +   +  L+  + + GD+  A  I + M+    
Sbjct: 409 ILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANI 468

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
            PT  +  ++++   +AG   + R  F+  +  G  P      ++I  + K+  ++ A N
Sbjct: 469 LPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASN 528

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
           +  E+ + G  P   TYT L+D   +   I+ A +LL  +   G     K   +L D + 
Sbjct: 529 VYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFC 588

Query: 514 RAGIEKKALQAL--------------------GFLEAKKEQMGPDDFERIIN-------- 545
           +    K A + L                    GF      +   D +++++N        
Sbjct: 589 KRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLK 648

Query: 546 -------GLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQPTR 592
                  GLL  G L  A  +H  M ++G    +R    LI+      Q +  R
Sbjct: 649 TYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENAR 702



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 94/216 (43%), Gaps = 1/216 (0%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           ++ +I A  KE  + +A R+   M   G   ++  +T L+  Y   GNL  A      + 
Sbjct: 231 FTSVITACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEIS 290

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P+K  Y+ +I      G  +        M T GI  S     ++L  + +C   +
Sbjct: 291 ESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLKCQSWQ 350

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  + N   +E     + +   L+    + G  ++A + +D +I  G  P+     ++I
Sbjct: 351 NAFTMFN-DALESGLANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNII 409

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
             + +K+ ++ A  +  E+  +GF P   T+T+L+D
Sbjct: 410 LGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMD 445



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/229 (21%), Positives = 95/229 (41%), Gaps = 7/229 (3%)

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           +AE+   +    G+  D    ++ VH+     N   A      +R+ G+ P +  + S+I
Sbjct: 176 EAEQHFLQAKARGVELDQEAYSIFVHLLCLKPNSGYALSLLREMRAAGWIPPEGTFTSVI 235

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
            A V  G     + L D M+  G   +  +  +L++ +   G++R A  + N +      
Sbjct: 236 TACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLV 295

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
           P   + ++L++   + G+ ++A   +  M   G +       S++  Y K      A  +
Sbjct: 296 PNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLKCQSWQNAFTM 355

Query: 455 LLELEKDGFEPGPA---TYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
                 D  E G A   T+  L+ WL +   +NEA  L  ++   G +P
Sbjct: 356 F----NDALESGLANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISP 400


>gi|255660798|gb|ACU25568.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
          Length = 418

 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 120/262 (45%), Gaps = 8/262 (3%)

Query: 211 LAEWKELLQPSRIDWINLLD---RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAH 267
           + +W   L+PS + +  L++   +L + N     K A   +     Q +V  YS LI+  
Sbjct: 162 ITKWG--LRPSVVSFNTLMNGYIKLGDLNEGFRLKNA---MQASGVQPDVYTYSVLINGL 216

Query: 268 AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK 327
            KE+ ++DA  +  +M + G+VP+ VT T L+  + K G +D A E ++ + S    PD 
Sbjct: 217 CKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDL 276

Query: 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNI 387
             YN++I      G  K    L+D MI  G++  +  Y  L+    + GD+  A +    
Sbjct: 277 ITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKR 336

Query: 388 MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447
           M  E  +    + T L+    Q G    A      M+ +G KP+      +I  + KK  
Sbjct: 337 MIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGD 396

Query: 448 LDKALNLLLELEKDGFEPGPAT 469
           +     LL E+++DG+ P   T
Sbjct: 397 VWTGSKLLKEMQRDGYMPSVVT 418



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/283 (20%), Positives = 130/283 (45%), Gaps = 3/283 (1%)

Query: 220 PSRIDWINLL--DRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           P+ + + N+L    ++E   +L   V +  +++   + +V  ++ L++ + K   L +  
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFD-AITKWGLRPSVVSFNTLMNGYIKLGDLNEGF 191

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
           R+   M  +G+ PD+ T +VL++   K   +D A   F+ +   G  P+   + ++I  +
Sbjct: 192 RLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGH 251

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
              G+  L M +   M++  +      Y  L+    + GD++ A  + + M ++  +P  
Sbjct: 252 CKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDK 311

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
            + T L++   + GD + A      MI+   + DD    ++I+   ++     A  +L E
Sbjct: 312 ITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLRE 371

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
           +   G +P   TYT++++   +   +    +LL ++   G  P
Sbjct: 372 MLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMP 414



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/267 (21%), Positives = 114/267 (42%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E  +  ++  ++ L+ +  KE  +  A+ +   + + G+ P +V+   L++ Y K G+L+
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLN 188

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
                  ++++ G QPD   Y+ +I       +      L D M+  G+  +   +  L+
Sbjct: 189 EGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLI 248

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               + G V  A +I   M  +   P L +   L+    + GD  QA+   D MI  G K
Sbjct: 249 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLK 308

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     ++I    K+  L+ A      + K+        YT L+  L +     +AE++
Sbjct: 309 PDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAG 516
           L ++  +G  P       + + + + G
Sbjct: 369 LREMLSVGLKPEIGTYTMIINEFCKKG 395



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/309 (21%), Positives = 131/309 (42%), Gaps = 6/309 (1%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGI-VPDIVTSTVLVHMYSKAGNLDRAK 312
           ++++  +S LI A+ +   L DA    +   E+   VP      VL H+  K        
Sbjct: 63  RSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHL-MKLKYFKLVW 121

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
             +E     G+      +N ++ ++V  G+ +L  S+ D +   G+  S   +  L+  +
Sbjct: 122 GFYEENLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGY 181

Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
            + GD+    ++ N M+    QP + + ++L+    +    D A   FD M+  G  P+ 
Sbjct: 182 IKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNG 241

Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
               ++I  + K   +D A+ +  ++      P   TY  L+  L +   + +A+ L+ +
Sbjct: 242 VTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDE 301

Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAG 550
           +   G  P      +L D   + G  + A +        KE +  DD  +  +I+GL   
Sbjct: 302 MIMKGLKPDKITYTTLIDGNCKEGDLETAFEYRK--RMIKENIRLDDVAYTALISGLCQE 359

Query: 551 GFLQDAQRV 559
           G   DA+++
Sbjct: 360 GRSVDAEKM 368


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 143/327 (43%), Gaps = 28/327 (8%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F +++   + +ID + K   L  A ++  +M+E     D+V+ T L+  Y+K G+++ A 
Sbjct: 174 FASDLYVGNSMIDLYVKCGFLGCARKVFDEMSER----DVVSWTELIVAYAKYGDMESAS 229

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
             F+ L S     D   + +M+  Y   G+PK  +     M   G+E  E     ++ + 
Sbjct: 230 GLFDDLPS----KDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISAC 285

Query: 373 AQCGDVRGAGQITNIMRIEEFQPT--LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
           AQ G V+ A  I +I     F P+  +   + L++ Y + G PD+A   F+ M     + 
Sbjct: 286 AQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVM----KER 341

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           +    +SMI  Y        AL L  ++ K    P   T+  ++       L+ +  QL 
Sbjct: 342 NVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLF 401

Query: 491 GKISE-LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLA 549
            K+ +  G AP       + D+  RAG  ++AL  +     K   M P       NG + 
Sbjct: 402 AKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLV-----KTMPMEP-------NGGVW 449

Query: 550 GGFLQDAQRVHGLMEAQGFAASERLKV 576
           G  L  A R+HG  +    AA+E  K+
Sbjct: 450 GALL-GACRIHGNPDIAQIAANELFKL 475



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 135/311 (43%), Gaps = 21/311 (6%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF-ESL 318
           ++ +I  +A +  L ++     +M  +G+ P   T + L      A N+D  K+   +++
Sbjct: 110 WTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTI 169

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
              GF  D  V NSMI  YV  G       + D M     ER    +  L+ ++A+ GD+
Sbjct: 170 LIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEM----SERDVVSWTELIVAYAKYGDM 225

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             A  + + +  ++    + + T +V  Y Q G P +A   F  M  +G + D+   A +
Sbjct: 226 ESASGLFDDLPSKD----MVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGV 281

Query: 439 IAAYGKKNLLDKALNLLLEL-EKDGFEPGPATY--TVLVDWLGRLQLINEAEQLLGKISE 495
           I+A  +   +  A N + ++ E+ GF P       + L+D   +    +EA     K+ E
Sbjct: 282 ISACAQLGAVKHA-NWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAY----KVFE 336

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFL 553
           + +        S+   YA  G    ALQ   F +  K ++ P+   F  I++     G +
Sbjct: 337 VMKERNVFSYSSMILGYAMHGRAHSALQL--FHDMLKTEIRPNKVTFIGILSACSHAGLV 394

Query: 554 QDAQRVHGLME 564
           +  +++   ME
Sbjct: 395 EQGRQLFAKME 405


>gi|297844848|ref|XP_002890305.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336147|gb|EFH66564.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 860

 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 119/259 (45%), Gaps = 3/259 (1%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           Q N   Y++LI ++ + N L +A  +  +M E G  PD VT   L+ +++KAG LD A +
Sbjct: 396 QPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMD 455

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
            ++ +++ G  PD   Y+ +I     AG       L   M+  G   +   Y  ++   A
Sbjct: 456 MYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHA 515

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           +  + + A ++   M+   F+P   + ++++E  G  G  ++A + F  M +    PD+ 
Sbjct: 516 KARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEP 575

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
               ++  +GK   ++KA      +   G  P   T   L+    R+  I EA +LL  +
Sbjct: 576 VYGLLVDLWGKAGNVEKAWQWYQAMLHAGLLPNVPTCNSLLSTFLRVNKIAEAYELLQNM 635

Query: 494 SELGEAPP---FKIQVSLC 509
             LG  P    + + +S C
Sbjct: 636 LALGLRPSLQTYTLLLSCC 654



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/274 (21%), Positives = 111/274 (40%), Gaps = 35/274 (12%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           +  F+ +   Y+ ++    +        ++L +M  +G  P+ VT   L+H Y +A  L+
Sbjct: 357 QPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLN 416

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A   F  ++  G +PD+  Y ++I  +  AG   + M +   M   G+           
Sbjct: 417 EAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLS---------- 466

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
                                    P   + ++++   G+AG    A   F  M+  G  
Sbjct: 467 -------------------------PDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCT 501

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           P+      M+  + K      AL L  +++  GFEP   TY+++++ LG    + EAE +
Sbjct: 502 PNLVTYNIMMDLHAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAV 561

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
             ++ +    P   +   L D++ +AG  +KA Q
Sbjct: 562 FTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQ 595



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 86/198 (43%), Gaps = 15/198 (7%)

Query: 383 QITNIMRIEEFQPT----LESCTLLVEAY------GQAGDPDQARSNFDYMIRL-GHKPD 431
            +++++R   + P     L++  L ++AY       Q  D   A   F ++ R  G K D
Sbjct: 304 NVSSVLRRFRWGPAAEEALQNLGLRIDAYQANQVLKQMNDYGNALGFFYWLKRQPGFKHD 363

Query: 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
                +M+   G+         LL E+ +DG +P   TY  L+   GR   +NEA  +  
Sbjct: 364 GHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFN 423

Query: 492 KISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFER--IINGLLA 549
           ++ E G  P      +L D++A+AG    A+     ++A    + PD F    IIN L  
Sbjct: 424 QMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGG--LSPDTFTYSVIINCLGK 481

Query: 550 GGFLQDAQRVHGLMEAQG 567
            G L  A ++   M  QG
Sbjct: 482 AGHLPAAHKLFCEMVDQG 499



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 74/182 (40%)

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
           R  GF+ D   Y +M+     A Q      L+D M+  G + +   Y  L+ S+ +   +
Sbjct: 356 RQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYL 415

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             A  + N M+    +P   +   L++ + +AG  D A   +  M   G  PD    + +
Sbjct: 416 NEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVI 475

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           I   GK   L  A  L  E+   G  P   TY +++D   + +    A +L   +   G 
Sbjct: 476 INCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQSALKLYRDMQNAGF 535

Query: 499 AP 500
            P
Sbjct: 536 EP 537



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 64/132 (48%), Gaps = 3/132 (2%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +    F+ +   YS +++       LE+AE +  +M +   +PD     +LV ++ KAGN
Sbjct: 530 MQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGN 589

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +++A + ++++   G  P+    NS++  ++   +      L+  M+  G+  S + Y  
Sbjct: 590 VEKAWQWYQAMLHAGLLPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTL 649

Query: 368 LLRSFAQCGDVR 379
           LL   + C D R
Sbjct: 650 LL---SCCTDGR 658


>gi|356560499|ref|XP_003548529.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Glycine max]
          Length = 836

 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 84/356 (23%), Positives = 161/356 (45%), Gaps = 13/356 (3%)

Query: 157 GLDLSDPKWTEVAEKIHERGEMI--LPEEPKPITGKCK----LITDKILSLEKEEDPSPL 210
           GL ++    + V  ++ ER   +  L    K ++G  +    L+T  ++ L K E  S  
Sbjct: 425 GLSVNMDVCSYVIHRLMERSGFVSALKIVTKLLSGNIRVSDSLLTPLVVGLCKCEGHSEA 484

Query: 211 LAEWKEL-----LQPSRIDWINLLDRLREQ-NTQLYFKVAELVLSEESFQTNVRDYSKLI 264
           +  W +L     L  + +    LL  L E+ N +  F+V + +L E+    +   Y+ LI
Sbjct: 485 IELWFKLAAVKGLAANTVTSNALLHGLCERGNMEEVFEVLKQML-EKGLLLDRISYNTLI 543

Query: 265 DAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQ 324
               K   +E+A ++ ++M +    PD  T   L+   +  G +D         + +GF 
Sbjct: 544 FGCCKWGKIEEAFKLKEEMVQQEFQPDTYTYNFLMKGLADMGKIDDVHRLLHEAKEYGFV 603

Query: 325 PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQI 384
           P+   Y  ++  Y  A + +  +     +    +E S  +Y  L+ ++ + G+V  A ++
Sbjct: 604 PNVYTYALLLEGYCKADRIEDAVKFFKNLDYEKVELSSVVYNILIAAYCRIGNVTEAFKL 663

Query: 385 TNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGK 444
            + M+     PT  + + L+      G  D+A+  F+ M   G  P+  C  ++I  + K
Sbjct: 664 RDAMKSRGILPTCATYSSLIHGMCCIGRVDEAKEIFEEMRNEGLLPNVFCYTALIGGHCK 723

Query: 445 KNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
              +D   ++LLE+  +G  P   TYT+++D   +L  + EA +LL ++   G AP
Sbjct: 724 LGQMDIVGSILLEMSSNGIRPNKITYTIMIDGYCKLGNMKEARELLNEMIRNGIAP 779



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 103/234 (44%), Gaps = 12/234 (5%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E  F  NV  Y+ L++ + K + +EDA +  K ++   +    V   +L+  Y + GN+ 
Sbjct: 599 EYGFVPNVYTYALLLEGYCKADRIEDAVKFFKNLDYEKVELSSVVYNILIAAYCRIGNVT 658

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A +  ++++S G  P    Y+S+I      G+      + + M   G+  +   Y AL+
Sbjct: 659 EAFKLRDAMKSRGILPTCATYSSLIHGMCCIGRVDEAKEIFEEMRNEGLLPNVFCYTALI 718

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               + G +   G I   M     +P   + T++++ Y + G+  +AR   + MIR G  
Sbjct: 719 GGHCKLGQMDIVGSILLEMSSNGIRPNKITYTIMIDGYCKLGNMKEARELLNEMIRNGIA 778

Query: 430 PDDRCTASMIAAYGKKNLLDKAL------NLLLELEKDGFEPGPATYTVLVDWL 477
           PD     ++   Y K+  L   L      N+ L LE++       TY  L+  L
Sbjct: 779 PDTVTYNALQKGYCKERELTVTLQSDHKSNIGLPLEEE------ITYNTLIHKL 826



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/264 (22%), Positives = 107/264 (40%), Gaps = 54/264 (20%)

Query: 287 GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLG 346
           G+ PD+ T T  ++ + K G +  A + F  +   G  P+   YN++I     +G+ +  
Sbjct: 250 GVAPDVFTFTTAINAFCKGGRVGDAVDLFCKMEGLGVFPNVVTYNNVIDGLFKSGRFEEA 309

Query: 347 MSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA 406
           +   D M+ S +  S   Y  L               I+ +M++E F+   E+  +LVE 
Sbjct: 310 LRFKDRMVRSKVNPSVVTYGVL---------------ISGLMKLEMFE---EANEVLVEM 351

Query: 407 YGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG 466
           Y                  +G  P++    ++I  Y +K  + +AL +  E+   G +P 
Sbjct: 352 YS-----------------MGFAPNEVVFNALIDGYCRKGDMGEALRVRDEMAMKGMKPN 394

Query: 467 PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALG 526
             T+  L+    R   + +AEQ+L  I   G      + + +C       +E+      G
Sbjct: 395 FVTFNTLLQGFCRSNQMEQAEQVLVYILSSG----LSVNMDVCSYVIHRLMERS-----G 445

Query: 527 FLEAKKEQMGPDDFERIINGLLAG 550
           F+ A K          I+  LL+G
Sbjct: 446 FVSALK----------IVTKLLSG 459



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 46/91 (50%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +  E    NV  Y+ LI  H K   ++    IL +M+ NGI P+ +T T+++  Y K GN
Sbjct: 702 MRNEGLLPNVFCYTALIGGHCKLGQMDIVGSILLEMSSNGIRPNKITYTIMIDGYCKLGN 761

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338
           +  A+E    +  +G  PD   YN++   Y 
Sbjct: 762 MKEARELLNEMIRNGIAPDTVTYNALQKGYC 792



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/328 (17%), Positives = 137/328 (41%), Gaps = 1/328 (0%)

Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
           F  N   ++ LID + ++  + +A R+  +M   G+ P+ VT   L+  + ++  +++A+
Sbjct: 356 FAPNEVVFNALIDGYCRKGDMGEALRVRDEMAMKGMKPNFVTFNTLLQGFCRSNQMEQAE 415

Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
           +    + S G   +  V + +I   +        + +V  +++  I  S+ +   L+   
Sbjct: 416 QVLVYILSSGLSVNMDVCSYVIHRLMERSGFVSALKIVTKLLSGNIRVSDSLLTPLVVGL 475

Query: 373 AQC-GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
            +C G          +  ++       +   L+    + G+ ++       M+  G   D
Sbjct: 476 CKCEGHSEAIELWFKLAAVKGLAANTVTSNALLHGLCERGNMEEVFEVLKQMLEKGLLLD 535

Query: 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
                ++I    K   +++A  L  E+ +  F+P   TY  L+  L  +  I++  +LL 
Sbjct: 536 RISYNTLIFGCCKWGKIEEAFKLKEEMVQQEFQPDTYTYNFLMKGLADMGKIDDVHRLLH 595

Query: 492 KISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGG 551
           +  E G  P       L + Y +A   + A++    L+ +K ++    +  +I      G
Sbjct: 596 EAKEYGFVPNVYTYALLLEGYCKADRIEDAVKFFKNLDYEKVELSSVVYNILIAAYCRIG 655

Query: 552 FLQDAQRVHGLMEAQGFAASERLKVALI 579
            + +A ++   M+++G   +     +LI
Sbjct: 656 NVTEAFKLRDAMKSRGILPTCATYSSLI 683



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 67/150 (44%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+ +ID   K    E+A R   +M  + + P +VT  VL+    K    + A E  
Sbjct: 289 NVVTYNNVIDGLFKSGRFEEALRFKDRMVRSKVNPSVVTYGVLISGLMKLEMFEEANEVL 348

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             + S GF P++ V+N++I  Y   G     + + D M   G++ +   +  LL+ F + 
Sbjct: 349 VEMYSMGFAPNEVVFNALIDGYCRKGDMGEALRVRDEMAMKGMKPNFVTFNTLLQGFCRS 408

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVE 405
             +  A Q+   +        ++ C+ ++ 
Sbjct: 409 NQMEQAEQVLVYILSSGLSVNMDVCSYVIH 438



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 60/275 (21%), Positives = 107/275 (38%), Gaps = 56/275 (20%)

Query: 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
           ++ L +L S  +C   R A  I  +       P L++C LL+ +  +A +  ++   FD 
Sbjct: 187 DLLLHILCSQFKCLGSRCAFDIFVMFSKRGVFPCLKTCNLLLSSLVKANELHKSYEVFDL 246

Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG-------------------- 462
             + G  PD     + I A+ K   +  A++L  ++E  G                    
Sbjct: 247 ACQ-GVAPDVFTFTTAINAFCKGGRVGDAVDLFCKMEGLGVFPNVVTYNNVIDGLFKSGR 305

Query: 463 FE---------------PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVS 507
           FE               P   TY VL+  L +L++  EA ++L ++  +G AP   +  +
Sbjct: 306 FEEALRFKDRMVRSKVNPSVVTYGVLISGLMKLEMFEEANEVLVEMYSMGFAPNEVVFNA 365

Query: 508 LCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV-------- 559
           L D Y R G   +AL+    +  K  +     F  ++ G      ++ A++V        
Sbjct: 366 LIDGYCRKGDMGEALRVRDEMAMKGMKPNFVTFNTLLQGFCRSNQMEQAEQVLVYILSSG 425

Query: 560 ------------HGLMEAQGFAASERLKVALISSQ 582
                       H LME  GF ++ ++   L+S  
Sbjct: 426 LSVNMDVCSYVIHRLMERSGFVSALKIVTKLLSGN 460



 Score = 43.9 bits (102), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 49/254 (19%), Positives = 88/254 (34%), Gaps = 37/254 (14%)

Query: 287 GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLG 346
           G+  + VTS  L+H   + GN++   E  + +   G   D+  YN++I      G+ +  
Sbjct: 496 GLAANTVTSNALLHGLCERGNMEEVFEVLKQMLEKGLLLDRISYNTLIFGCCKWGKIEEA 555

Query: 347 MSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA 406
             L + M+                                    +EFQP   +   L++ 
Sbjct: 556 FKLKEEMVQ-----------------------------------QEFQPDTYTYNFLMKG 580

Query: 407 YGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG 466
               G  D            G  P+    A ++  Y K + ++ A+     L+ +  E  
Sbjct: 581 LADMGKIDDVHRLLHEAKEYGFVPNVYTYALLLEGYCKADRIEDAVKFFKNLDYEKVELS 640

Query: 467 PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALG 526
              Y +L+    R+  + EA +L   +   G  P      SL       G   +A +   
Sbjct: 641 SVVYNILIAAYCRIGNVTEAFKLRDAMKSRGILPTCATYSSLIHGMCCIGRVDEAKEI-- 698

Query: 527 FLEAKKEQMGPDDF 540
           F E + E + P+ F
Sbjct: 699 FEEMRNEGLLPNVF 712


>gi|356516744|ref|XP_003527053.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Glycine max]
          Length = 882

 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 103/216 (47%)

Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
           Y  LID HAK   L+ A  + ++M E G+ PD  T +V+++   K+GNL  A   F  + 
Sbjct: 459 YCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDTFTYSVMINCLGKSGNLSAAHRLFCEMV 518

Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
             G  P+   YN +I     A   +  + L   M  +G +  +  Y  ++     CG + 
Sbjct: 519 DQGCVPNIVTYNILIALQAKARNYQTALKLYRDMQNAGFKPDKVTYSIVMEVLGYCGYLE 578

Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
            A  +   M+   + P      LL++ +G+AG+ ++A   +  M+R G  P+     S++
Sbjct: 579 EAEAVFFEMKQNNWVPDEPVYGLLIDLWGKAGNVEKAWEWYHAMLRAGLLPNVPTCNSLL 638

Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
           +A+ + + L  A NLL  +   G  P   TYT+L+ 
Sbjct: 639 SAFLRVHRLPDAYNLLQNMVTLGLNPSLQTYTLLLS 674



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 132/289 (45%), Gaps = 10/289 (3%)

Query: 226 INLLDRLREQNTQLYFKVAELV--LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKM 283
           + +L R RE     +  + +L+  + ++  Q NV  Y++LI ++ + N L +A  +  +M
Sbjct: 393 VGILGRARE-----FGAINKLLEQMVKDGCQPNVVTYNRLIHSYGRANYLGEALNVFNQM 447

Query: 284 NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343
            E G  PD VT   L+ +++KAG LD A   +E ++  G  PD   Y+ MI     +G  
Sbjct: 448 QEMGCEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDTFTYSVMINCLGKSGNL 507

Query: 344 KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403
                L   M+  G   +   Y  L+   A+  + + A ++   M+   F+P   + +++
Sbjct: 508 SAAHRLFCEMVDQGCVPNIVTYNILIALQAKARNYQTALKLYRDMQNAGFKPDKVTYSIV 567

Query: 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGF 463
           +E  G  G  ++A + F  M +    PD+     +I  +GK   ++KA      + + G 
Sbjct: 568 MEVLGYCGYLEEAEAVFFEMKQNNWVPDEPVYGLLIDLWGKAGNVEKAWEWYHAMLRAGL 627

Query: 464 EPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP---FKIQVSLC 509
            P   T   L+    R+  + +A  LL  +  LG  P    + + +S C
Sbjct: 628 LPNVPTCNSLLSAFLRVHRLPDAYNLLQNMVTLGLNPSLQTYTLLLSCC 676



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 127/294 (43%), Gaps = 37/294 (12%)

Query: 228 LLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENG 287
           +L +L++ +  L F     +  +  F  +   Y+ ++    +        ++L++M ++G
Sbjct: 359 ILKQLQDHSVALSFFY--WLKRQPGFWHDGHTYTTMVGILGRAREFGAINKLLEQMVKDG 416

Query: 288 IVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGM 347
             P++VT   L+H Y +A  L  A   F  ++  G +PD+  Y ++I  +  AG   + M
Sbjct: 417 CQPNVVTYNRLIHSYGRANYLGEALNVFNQMQEMGCEPDRVTYCTLIDIHAKAGFLDVAM 476

Query: 348 SLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAY 407
           S+         ER +E+ L+                           P   + ++++   
Sbjct: 477 SM--------YERMQEVGLS---------------------------PDTFTYSVMINCL 501

Query: 408 GQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGP 467
           G++G+   A   F  M+  G  P+      +IA   K      AL L  +++  GF+P  
Sbjct: 502 GKSGNLSAAHRLFCEMVDQGCVPNIVTYNILIALQAKARNYQTALKLYRDMQNAGFKPDK 561

Query: 468 ATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKA 521
            TY+++++ LG    + EAE +  ++ +    P   +   L D++ +AG  +KA
Sbjct: 562 VTYSIVMEVLGYCGYLEEAEAVFFEMKQNNWVPDEPVYGLLIDLWGKAGNVEKA 615



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 126/289 (43%), Gaps = 52/289 (17%)

Query: 219 QPSRIDWINLLD-----RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCL 273
           +P R+ +  L+D        +    +Y ++ E+ LS ++F      YS +I+   K   L
Sbjct: 453 EPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDTFT-----YSVMINCLGKSGNL 507

Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
             A R+  +M + G VP+IVT  +L+ + +KA N   A + +  +++ GF+PDK  Y+ +
Sbjct: 508 SAAHRLFCEMVDQGCVPNIVTYNILIALQAKARNYQTALKLYRDMQNAGFKPDKVTYSIV 567

Query: 334 --IMAYVN------------------AGQPKLGMSLVDMMITSG-IERSEEIYLALLRS- 371
             ++ Y                      +P  G+ L+D+   +G +E++ E Y A+LR+ 
Sbjct: 568 MEVLGYCGYLEEAEAVFFEMKQNNWVPDEPVYGL-LIDLWGKAGNVEKAWEWYHAMLRAG 626

Query: 372 --------------FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
                         F +   +  A  +   M      P+L++ TLL+    +A  P    
Sbjct: 627 LLPNVPTCNSLLSAFLRVHRLPDAYNLLQNMVTLGLNPSLQTYTLLLSCCTEAQSPYDMG 686

Query: 418 SNFDYMIRLGHKPDDRCTASMIAA----YGKKNLLDKALNLLLELEKDG 462
              + M   GH P      SM AA       ++ + K L+L+   +++G
Sbjct: 687 FCCELMAVSGH-PAHAFLQSMPAAGPDGQNVRDHVSKFLDLMHSEDREG 734



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 91/188 (48%), Gaps = 4/188 (2%)

Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
           QP + +   L+ +YG+A    +A + F+ M  +G +PD     ++I  + K   LD A++
Sbjct: 418 QPNVVTYNRLIHSYGRANYLGEALNVFNQMQEMGCEPDRVTYCTLIDIHAKAGFLDVAMS 477

Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
           +   +++ G  P   TY+V+++ LG+   ++ A +L  ++ + G  P       L  + A
Sbjct: 478 MYERMQEVGLSPDTFTYSVMINCLGKSGNLSAAHRLFCEMVDQGCVPNIVTYNILIALQA 537

Query: 514 RAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAAS 571
           +A   + AL+   + + +     PD   +  ++  L   G+L++A+ V   M+   +   
Sbjct: 538 KARNYQTALKL--YRDMQNAGFKPDKVTYSIVMEVLGYCGYLEEAEAVFFEMKQNNWVPD 595

Query: 572 ERLKVALI 579
           E +   LI
Sbjct: 596 EPVYGLLI 603



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 89/209 (42%), Gaps = 15/209 (7%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +    F+ +   YS +++       LE+AE +  +M +N  VPD     +L+ ++ KAGN
Sbjct: 552 MQNAGFKPDKVTYSIVMEVLGYCGYLEEAEAVFFEMKQNNWVPDEPVYGLLIDLWGKAGN 611

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +++A E + ++   G  P+    NS++ A++   +     +L+  M+T G+  S + Y  
Sbjct: 612 VEKAWEWYHAMLRAGLLPNVPTCNSLLSAFLRVHRLPDAYNLLQNMVTLGLNPSLQTYTL 671

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAG-DPDQARSNFDYMIRL 426
           LL    +       G    +M +             +++   AG D    R +    + L
Sbjct: 672 LLSCCTEAQSPYDMGFCCELMAVSG-----HPAHAFLQSMPAAGPDGQNVRDHVSKFLDL 726

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLL 455
            H  D           GK+ L+D  ++ L
Sbjct: 727 MHSEDRE---------GKRGLVDAVVDFL 746



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 77/184 (41%), Gaps = 5/184 (2%)

Query: 409 QAGDPDQARSNFDYMIRL-GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGP 467
           Q  D   A S F ++ R  G   D     +M+   G+         LL ++ KDG +P  
Sbjct: 362 QLQDHSVALSFFYWLKRQPGFWHDGHTYTTMVGILGRAREFGAINKLLEQMVKDGCQPNV 421

Query: 468 ATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGF 527
            TY  L+   GR   + EA  +  ++ E+G  P      +L D++A+AG    A+    +
Sbjct: 422 VTYNRLIHSYGRANYLGEALNVFNQMQEMGCEPDRVTYCTLIDIHAKAGFLDVAMSM--Y 479

Query: 528 LEAKKEQMGPDDFER--IINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFN 585
              ++  + PD F    +IN L   G L  A R+   M  QG   +      LI+ Q   
Sbjct: 480 ERMQEVGLSPDTFTYSVMINCLGKSGNLSAAHRLFCEMVDQGCVPNIVTYNILIALQAKA 539

Query: 586 RQRQ 589
           R  Q
Sbjct: 540 RNYQ 543


>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 584

 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 149/330 (45%), Gaps = 14/330 (4%)

Query: 248 LSEESFQTNVRDYS-------KLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
           +S E+ QT+V  +        KL++   +     ++   L+ M + G  PD++  T L+ 
Sbjct: 53  VSAETRQTHVLSFDFKEVHLMKLLNRSCRAGKYNESLYFLECMVDKGYTPDVILCTKLIK 112

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
            +  + N+ +A    E L  +G +PD   YN++I  ++ A Q +    ++D M + G   
Sbjct: 113 GFFNSRNIGKATRVMEILERYG-KPDVFAYNALISGFIKANQLENANRVLDRMKSRGFLP 171

Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
               Y  ++ SF   G +  A +I   +  +  +PT+ + T+L+EA    G  D A    
Sbjct: 172 DVVTYNIMIGSFCSRGKLDLALEIFEELLKDNCEPTVITYTILIEATILDGGIDVAMKLL 231

Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
           D M+  G +PD     ++I    K+ ++DKA  LL  L   G +P   TY +L+  L   
Sbjct: 232 DEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSR 291

Query: 481 QLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ-MGPDD 539
              +E E+L+ ++  +G  P       L     R G   K  +A+  L + KE+ + PD 
Sbjct: 292 GKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDG---KVEEAVNLLRSMKEKGLKPDA 348

Query: 540 --FERIINGLLAGGFLQDAQRVHGLMEAQG 567
             ++ +I G    G L  A      M + G
Sbjct: 349 YCYDPLIAGFCREGRLDLATEFLEYMISDG 378



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 146/339 (43%), Gaps = 41/339 (12%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ LI    K N LE+A R+L +M   G +PD+VT  +++  +   G LD A E F
Sbjct: 137 DVFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIF 196

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA-------- 367
           E L     +P    Y  +I A +  G   + M L+D M++ G+E     Y A        
Sbjct: 197 EELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKE 256

Query: 368 --------LLRSFAQCG---DV-----------------RGAGQITNIMRIEEFQPTLES 399
                   LLRS +  G   D+                  G   I+ ++ I   +P + +
Sbjct: 257 MMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISI-GCKPNVVT 315

Query: 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELE 459
            ++L+    + G  ++A +    M   G KPD  C   +IA + ++  LD A   L  + 
Sbjct: 316 HSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMI 375

Query: 460 KDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEK 519
            DG  P    Y  ++  L R    ++A ++  K+ E+G  P      +L      +G   
Sbjct: 376 SDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSALWSSGDRY 435

Query: 520 KALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQDA 556
           +AL+ +  L+   + + PD+  +  +I+ L   G + +A
Sbjct: 436 RALEMI--LKLLNQGIDPDEITYNSLISCLCRDGMVDEA 472



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 150/341 (43%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           L +++ +  V  Y+ LI+A   +  ++ A ++L +M   G+ PD +T   ++    K   
Sbjct: 199 LLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEMM 258

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D+A E   SL S G +PD   YN ++   ++ G+   G  L+  MI+ G + +   +  
Sbjct: 259 VDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSI 318

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+ +  + G V  A  +   M+ +  +P       L+  + + G  D A    +YMI  G
Sbjct: 319 LIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDG 378

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD     +++A   +    D+AL +  +L++ G  P  ++Y  L   L        A 
Sbjct: 379 CLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRAL 438

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
           +++ K+   G  P      SL     R G+  +A++ L  +++ + +     +  I+ GL
Sbjct: 439 EMILKLLNQGIDPDEITYNSLISCLCRDGMVDEAIELLVDMQSGRYRPNVVSYNIILLGL 498

Query: 548 LAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQR 588
                  DA  V   M  +G   +E   + LI    F+  R
Sbjct: 499 CKVNRANDAIEVLAAMTEKGCQPNETTYILLIEGIGFSGLR 539



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 59/296 (19%), Positives = 131/296 (44%), Gaps = 1/296 (0%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           LS    + ++  Y+ L+          + E+++ +M   G  P++VT ++L+    + G 
Sbjct: 269 LSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGK 328

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           ++ A     S++  G +PD   Y+ +I  +   G+  L    ++ MI+ G       Y  
Sbjct: 329 VEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNT 388

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++    + G    A ++   +      P + S   L  A   +GD  +A      ++  G
Sbjct: 389 IMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQG 448

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD+    S+I+   +  ++D+A+ LL++++   + P   +Y +++  L ++   N+A 
Sbjct: 449 IDPDEITYNSLISCLCRDGMVDEAIELLVDMQSGRYRPNVVSYNIILLGLCKVNRANDAI 508

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERI 543
           ++L  ++E G  P     + L +    +G+  +A++    L      +  D F R+
Sbjct: 509 EVLAAMTEKGCQPNETTYILLIEGIGFSGLRAEAMELANSLHGMN-AISEDSFNRL 563


>gi|13872949|dbj|BAB44054.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 909

 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 84/338 (24%), Positives = 145/338 (42%), Gaps = 33/338 (9%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           ++E     N   ++ LI+   K+  +++A R+  KM ++ ++P+ VT  V++  Y   GN
Sbjct: 492 MAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGN 551

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           + +A + ++ +   G +PD   Y S+I                 + +TSG+ ++ E    
Sbjct: 552 IRKAFQLYDQMVEMGLKPDNYTYRSLISG---------------LCLTSGVSKANEFVAD 596

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPT---------------LESCTLLVEAYGQAGD 412
           L  S+A   +      +    R   F  T               L S T++V A  +  D
Sbjct: 597 LENSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHD 656

Query: 413 PDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTV 472
            +++   F  M   G KPDD     MI A  K+  + +ALN   ++  DG+ P   T+TV
Sbjct: 657 KEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTV 716

Query: 473 LVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVS-LCDMYARAGIEKKALQALGFLEAK 531
           L++ L +   +  AE LL K    G   P K   +   D +A  G  +KA + L     +
Sbjct: 717 LINNLCKSGYLGSAE-LLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKA-KDLHSAMLQ 774

Query: 532 KEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
                   F  +I GL   G +Q+A  +   +   GF+
Sbjct: 775 GHLASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFS 812



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 85/361 (23%), Positives = 146/361 (40%), Gaps = 15/361 (4%)

Query: 186 PITGKCKLITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKVA 244
           P    C  + D++   E  E+   L  +  +L + P+   +  L+D+L +      F  A
Sbjct: 324 PSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNER---FDDA 380

Query: 245 ELVLSE---ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM 301
           + +  E      + N   Y+ LI A  K   +EDA  +  KM + GI   +     L++ 
Sbjct: 381 DRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLING 440

Query: 302 YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS 361
           Y K G+LDRA+     +   G  P    Y+ +I      G     M L   M   GI  +
Sbjct: 441 YCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWN 500

Query: 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421
              + AL+  F +   +  A ++ + M      P   +  +++E Y   G+  +A   +D
Sbjct: 501 NYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYD 560

Query: 422 YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ 481
            M+ +G KPD+    S+I+     + + KA   + +LE         + T L+    R  
Sbjct: 561 QMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREG 620

Query: 482 LINEAEQLLGKISELG---EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
              E   L  +++  G   +   F I V     YA      K    + F E K++ + PD
Sbjct: 621 RFTETYHLWDEMAVRGVKLDLVSFTIIV-----YAALKQHDKEKSCVLFREMKEQGVKPD 675

Query: 539 D 539
           D
Sbjct: 676 D 676



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 130/307 (42%), Gaps = 4/307 (1%)

Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
           A  +  KM ++G+  D    T  +  Y ++ NLD A+     + S G +     YN ++ 
Sbjct: 205 ARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRMESEGVKASAVPYNVLMY 264

Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
                 + +  + + ++M+  G+   E  Y  L+  F +  ++  A +IT+ M    F P
Sbjct: 265 GLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVP 324

Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
           +  +C+ +++   +    ++A S    +  LG  P+     ++I    K    D A  L 
Sbjct: 325 SEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLF 384

Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
            E+   G EP   TY +L+  L +  +I +A  L  K+ + G         SL + Y + 
Sbjct: 385 KEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQ 444

Query: 516 GIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASER 573
           G   +A   L  +   KE + P    +  +I GL   G L     +H  M  +G A +  
Sbjct: 445 GSLDRARGLLSGM--VKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNY 502

Query: 574 LKVALIS 580
              ALI+
Sbjct: 503 TFTALIN 509



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/311 (19%), Positives = 131/311 (42%), Gaps = 9/311 (2%)

Query: 242 KVAELVLSEESFQTNVRDYS--KLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLV 299
           K  E V   E+    + ++S   L+    +E    +   +  +M   G+  D+V+ T++V
Sbjct: 589 KANEFVADLENSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIV 648

Query: 300 HMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
           +   K  + +++   F  ++  G +PD   Y  MI A          ++  D M+  G  
Sbjct: 649 YAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYS 708

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
            +   +  L+ +  + G +  A  +   M      P   +    ++ +   GD ++A+  
Sbjct: 709 PNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDL 768

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
              M++ GH         +I    K   + +A++L+ ++ + GF P   +Y+ ++  L +
Sbjct: 769 HSAMLQ-GHLASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCK 827

Query: 480 LQLINEAEQLLGKISELGEAP---PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG 536
           +  IN+A +L  ++   G  P    + I +  C+++   G   KAL     +     Q  
Sbjct: 828 MGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVH---GESDKALGIYTNMIRSGVQPN 884

Query: 537 PDDFERIINGL 547
            D +  +++G+
Sbjct: 885 WDTYRALLSGI 895



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 102/240 (42%), Gaps = 2/240 (0%)

Query: 193 LITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEE 251
           +I    L    +E    L  E KE  ++P  I +  ++D L ++   +        +  +
Sbjct: 646 IIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVD 705

Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311
            +  N   ++ LI+   K   L  AE + K+M    ++P+  T    +  ++  G++++A
Sbjct: 706 GYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKA 765

Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
           K+   S    G       +N +I     AG+ +  + L+  +  SG       Y  ++  
Sbjct: 766 KD-LHSAMLQGHLASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHE 824

Query: 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
             + GD+  A ++ N M  +  +P + +  + +      G+ D+A   +  MIR G +P+
Sbjct: 825 LCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGVQPN 884


>gi|357483069|ref|XP_003611821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513156|gb|AES94779.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 749

 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 118/245 (48%), Gaps = 4/245 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           N   Y+ LID   K   ++ A+ +L +M   GIVP ++++T +++   +A N+D A + F
Sbjct: 153 NFYTYNMLIDGFCKRGEVKGAQEMLDEMKRVGIVPCVLSTTSILYGCCQANNVDEAHKLF 212

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             ++   + PD    N ++  +   G+ +  +S V M+   G   +   Y +L+ +F + 
Sbjct: 213 NDMKETSYPPDMISCNVVLNGFCKMGRLEEALSFVWMIKNDGFSLNRNSYASLINAFFKA 272

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
              R A      M  E   P +    +++    + G   +A    + M ++G  PD  C 
Sbjct: 273 RRYREAHACYTKMFKEGIVPDVVLYAIMIRGLSKEGRVGEAAKMLEEMTQIGLTPDSYCY 332

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++I      +LL++A +L LE+     E    T+T+L+  + +  ++ EA++L  ++ +
Sbjct: 333 NAVIQGLCDVDLLNRAQSLSLEIS----EHNVCTHTILICEMCKRGMVAEAQELFNQMEK 388

Query: 496 LGEAP 500
           LG  P
Sbjct: 389 LGCEP 393



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 130/283 (45%), Gaps = 10/283 (3%)

Query: 280 LKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339
           L+ + +NG++    +   LV  YS  G  ++A E+F  +R  G +PD  +YN+++   +N
Sbjct: 72  LELLKKNGVLVTSDSVRALVRSYSHMGYTEKAIESFSRMREFGIEPDAHMYNTILRDVLN 131

Query: 340 AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLES 399
               +L ++L   M+ S +E +   Y  L+  F + G+V+GA ++ + M+     P + S
Sbjct: 132 EKLLELALALYTTMLKSNVEPNFYTYNMLIDGFCKRGEVKGAQEMLDEMKRVGIVPCVLS 191

Query: 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELE 459
            T ++    QA + D+A   F+ M    + PD      ++  + K   L++AL+ +  ++
Sbjct: 192 TTSILYGCCQANNVDEAHKLFNDMKETSYPPDMISCNVVLNGFCKMGRLEEALSFVWMIK 251

Query: 460 KDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP---FKIQVSLCDMYARAG 516
            DGF     +Y  L++   + +   EA     K+ + G  P    + I +       R G
Sbjct: 252 NDGFSLNRNSYASLINAFFKARRYREAHACYTKMFKEGIVPDVVLYAIMIRGLSKEGRVG 311

Query: 517 IEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQDAQ 557
              K L+     E  +  + PD   +  +I GL     L  AQ
Sbjct: 312 EAAKMLE-----EMTQIGLTPDSYCYNAVIQGLCDVDLLNRAQ 349



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 107/248 (43%), Gaps = 34/248 (13%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           LS E  + NV  ++ LI    K   + +A+ +  +M + G  P +VT   L++   KA N
Sbjct: 351 LSLEISEHNVCTHTILICEMCKRGMVAEAQELFNQMEKLGCEPSVVTFNTLINGLCKAKN 410

Query: 308 LDRAKEAFESL---RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
           L++AK  F  L   R H            +     +GQ      L        +++++E+
Sbjct: 411 LEKAKNLFCKLEVGRRHSLH---------LSLSQGSGQVSDSARL--------LKKAKEM 453

Query: 365 YLA--LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
             A  +LR++    D+ G           E +P + +  +L+ A     + + A + F++
Sbjct: 454 CEAGQILRAYKLITDLAG-----------EVKPDIITYNILLNALCMDREVNAAYNFFEF 502

Query: 423 MIRLGH-KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ 481
           + + G+  PD+    ++I      +  D+A  +   ++K G EP  + Y  L+  L R  
Sbjct: 503 LQKKGYPSPDNVTYGTIIKGLFMVDREDEAFKVFQRMQKTGSEPTLSVYRTLMTCLCRKS 562

Query: 482 LINEAEQL 489
            ++ A  L
Sbjct: 563 KVSRAFTL 570


>gi|357159149|ref|XP_003578355.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Brachypodium distachyon]
          Length = 857

 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 130/274 (47%), Gaps = 5/274 (1%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           ++ +  +  V  Y+++I A+ + N L +A ++ ++M E G  PD VT   L+ +++KAG 
Sbjct: 390 MNRDRCKPTVVTYNRIIHAYGRANYLREAVKVFEEMEEAGYEPDRVTYCTLIDIHAKAGY 449

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L+ A + +  ++  G  PD   Y++M+      GQ      L   MI +G   +   Y  
Sbjct: 450 LEVAMDLYGRMQEVGLSPDTFTYSAMVNCLGKGGQLAAAYKLFCEMIENGCTPNLVTYNI 509

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           ++   A+  +     ++   M++  F+P   + ++++E  G  G  D+A + F  M R  
Sbjct: 510 IIALQAKARNYDNVVKLYRDMQVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEM-RRD 568

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             PD+     ++  +GK   +DKAL     + +DG +P   T   L+    ++    +A 
Sbjct: 569 WAPDEPVYGLLVDLWGKAGNVDKALGWYHAMLQDGLQPNVPTCNSLLSAFLKINRFQDAY 628

Query: 488 QLLGKISELGEAPP---FKIQVSLC-DMYARAGI 517
            +L  +   G  P    + + +S C D +A+ G+
Sbjct: 629 SVLQNMLAQGLVPSLQTYTLLLSCCTDAHAQMGL 662



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 74/334 (22%), Positives = 130/334 (38%), Gaps = 36/334 (10%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           +  F+ +   Y+ +I    +         +L +MN +   P +VT   ++H Y +A  L 
Sbjct: 357 QPGFKHDGHTYTTMIGILGQARQFGIMRNLLHEMNRDRCKPTVVTYNRIIHAYGRANYLR 416

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
            A + FE +   G++PD+  Y ++I  +  AG  ++ M L   M   G+      Y A++
Sbjct: 417 EAVKVFEEMEEAGYEPDRVTYCTLIDIHAKAGYLEVAMDLYGRMQEVGLSPDTFTYSAMV 476

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               + G +  A ++                                   F  MI  G  
Sbjct: 477 NCLGKGGQLAAAYKL-----------------------------------FCEMIENGCT 501

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           P+      +IA   K    D  + L  +++  GF P   TY+++++ LG    ++EAE +
Sbjct: 502 PNLVTYNIIIALQAKARNYDNVVKLYRDMQVAGFRPDKITYSIVMEVLGHCGHLDEAEAV 561

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLA 549
             ++     AP   +   L D++ +AG   KAL     +     Q        +++  L 
Sbjct: 562 FIEMRR-DWAPDEPVYGLLVDLWGKAGNVDKALGWYHAMLQDGLQPNVPTCNSLLSAFLK 620

Query: 550 GGFLQDAQRVHGLMEAQGFAASERLKVALISSQT 583
               QDA  V   M AQG   S +    L+S  T
Sbjct: 621 INRFQDAYSVLQNMLAQGLVPSLQTYTLLLSCCT 654


>gi|125560423|gb|EAZ05871.1| hypothetical protein OsI_28108 [Oryza sativa Indica Group]
          Length = 608

 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 90/416 (21%), Positives = 176/416 (42%), Gaps = 54/416 (12%)

Query: 204 EEDPSPLLAEWKELLQPSRIDWINLLDRLREQ-NTQLYFKVAELVLSEESFQTNVRDYSK 262
           +++P P  A    L++  ++   NL+  + E   TQ ++  +E+            D+  
Sbjct: 100 KKEPLPRDAVLGTLMRFKQLKKWNLVSEILEWLRTQHWWNFSEM------------DFLM 147

Query: 263 LIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG 322
           L+ A+ K      AER+LK MN+ G  P +++ T L+  Y +A    +A+  F  +++ G
Sbjct: 148 LVTAYGKLGDFSRAERVLKYMNKKGYKPSVISQTALMEAYGRAKQYRKAEAVFRRMQTSG 207

Query: 323 --------------------------------------FQPDKKVYNSMIMAYVNAGQPK 344
                                                 F+PD+K+++ MI  Y  AG   
Sbjct: 208 PEPSAVTYQIILKSFVEGDKYKEAEAIFEDLLNEKRASFKPDQKMFHMMIYMYKKAGDYA 267

Query: 345 LGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
               L   M   GI  S   + +L+ SF    D +    I + M+    +P + S +LL+
Sbjct: 268 QARKLFAQMSERGIPLSTVTFNSLM-SFET--DYKEVSNIYDQMQRTALKPDVVSYSLLI 324

Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
           +AYG+A   ++A + F+ M+  G +P  +    +I A+    L+++A  +   + +   E
Sbjct: 325 KAYGKARREEEALAVFEEMLDAGVRPTRKSYNILIDAFAISGLVEEAHTVFKAMRRHRVE 384

Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQA 524
           P   +YT +V        ++ AE+   +I E G  P   +  +L   Y++    ++ ++ 
Sbjct: 385 PDLCSYTTMVLAYVNASDMDGAEKFFRRIKEDGLKPNVVVYGTLMKGYSKLNNVERVMRV 444

Query: 525 LGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
              +  +  +     +  I++         +A      MEA+G+ A ++ K  L+S
Sbjct: 445 YERMRMQGVEPNQTIYTTIMDVHGRNSDFGNAVIWFKEMEARGYPADKKAKNILLS 500


>gi|75191658|sp|Q9M9X9.1|PPR18_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06710, mitochondrial; Flags: Precursor
 gi|7523709|gb|AAF63148.1|AC011001_18 Hypothetical protein [Arabidopsis thaliana]
          Length = 987

 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/335 (22%), Positives = 154/335 (45%), Gaps = 16/335 (4%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           + F  +   YSK+++     + +E A  + ++M   G+V D+ T T++V  + KAG +++
Sbjct: 477 QGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQ 536

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A++ F  +R  G  P+   Y ++I AY+ A +      L + M++ G   +   Y AL+ 
Sbjct: 537 ARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALID 596

Query: 371 SFAQCGDVRGAGQI-------TNIMRIEEF---------QPTLESCTLLVEAYGQAGDPD 414
              + G V  A QI        ++  ++ +         +P + +   L++ + ++   +
Sbjct: 597 GHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVE 656

Query: 415 QARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
           +AR   D M   G +P+     ++I    K   LD+A  +  E+ + GF     TY+ L+
Sbjct: 657 EARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLI 716

Query: 475 DWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ 534
           D   +++  + A ++L K+ E   AP   I   + D   + G   +A + +  +E K  Q
Sbjct: 717 DRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQ 776

Query: 535 MGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
                +  +I+G    G ++    +   M ++G A
Sbjct: 777 PNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVA 811



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 117/290 (40%), Gaps = 30/290 (10%)

Query: 244 AELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS 303
           A  ++  E+F  +   Y+KLI    + +  E+A   L +M     +P++VT + L+    
Sbjct: 289 ALTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCL 348

Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363
               L R K     +   G  P  K++NS++ AY  +G       L+  M+  G      
Sbjct: 349 NKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYV 408

Query: 364 IYLALLRSFAQCGD------------------VRGAGQITNIMRIEEFQPTLESCTLLVE 405
           +Y  L+ S   CGD                  +  AG + N + +  F   L S      
Sbjct: 409 VYNILIGSI--CGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCS------ 460

Query: 406 AYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
               AG  ++A S    MI  G  PD    + ++      + ++ A  L  E+++ G   
Sbjct: 461 ----AGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVA 516

Query: 466 GPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
              TYT++VD   +  LI +A +   ++ E+G  P      +L   Y +A
Sbjct: 517 DVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKA 566



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 127/293 (43%), Gaps = 12/293 (4%)

Query: 236 NTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTS 295
           +  +YFK  +    + S + NV  Y  L+D   K + +E+A ++L  M+  G  P+ +  
Sbjct: 622 DVDMYFKQYD----DNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVY 677

Query: 296 TVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMIT 355
             L+    K G LD A+E    +  HGF      Y+S+I  Y    +  L   ++  M+ 
Sbjct: 678 DALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLE 737

Query: 356 SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ 415
           +    +  IY  ++    + G    A ++  +M  +  QP + + T +++ +G  G  + 
Sbjct: 738 NSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIET 797

Query: 416 ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
                + M   G  P+      +I    K   LD A NLL E+++  +    A Y  +++
Sbjct: 798 CLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIE 857

Query: 476 WLGRLQLINEAEQLLGKISELGE---APPFKIQVSLCDMYARAGIEKKALQAL 525
              +     E  + LG + E+G+   AP   +   L D   +A   + AL+ L
Sbjct: 858 GFNK-----EFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLL 905



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 76/362 (20%), Positives = 138/362 (38%), Gaps = 53/362 (14%)

Query: 271 NC--LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKK 328
           NC  L+ AE+   +M   G+V + +  +        AG  ++A      +   GF PD  
Sbjct: 425 NCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTS 484

Query: 329 VYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIM 388
            Y+ ++    NA + +L   L + M   G+      Y  ++ SF + G +  A +  N M
Sbjct: 485 TYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEM 544

Query: 389 RIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP---------DDRCTA--- 436
           R     P + + T L+ AY +A     A   F+ M+  G  P         D  C A   
Sbjct: 545 REVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQV 604

Query: 437 ---------------------------------------SMIAAYGKKNLLDKALNLLLE 457
                                                  +++  + K + +++A  LL  
Sbjct: 605 EKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDA 664

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI 517
           +  +G EP    Y  L+D L ++  ++EA+++  ++SE G         SL D Y +   
Sbjct: 665 MSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKR 724

Query: 518 EKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVA 577
           +  A + L  +           +  +I+GL   G   +A ++  +ME +G   +     A
Sbjct: 725 QDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTA 784

Query: 578 LI 579
           +I
Sbjct: 785 MI 786



 Score = 40.0 bits (92), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 45/209 (21%), Positives = 83/209 (39%), Gaps = 5/209 (2%)

Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
           VLV  + + G+   A E    L+   F+P +  YN +I A++ A +     SL+   ++ 
Sbjct: 205 VLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLD-SASLIHREMSL 263

Query: 357 GIERSEEIYL-ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ 415
              R +   L     S  + G  R A     ++  E F P     T L+    +A   ++
Sbjct: 264 ANLRMDGFTLRCFAYSLCKVGKWREA---LTLVETENFVPDTVFYTKLISGLCEASLFEE 320

Query: 416 ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
           A    + M      P+    ++++     K  L +   +L  +  +G  P P  +  LV 
Sbjct: 321 AMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVH 380

Query: 476 WLGRLQLINEAEQLLGKISELGEAPPFKI 504
                   + A +LL K+ + G  P + +
Sbjct: 381 AYCTSGDHSYAYKLLKKMVKCGHMPGYVV 409


>gi|410109925|gb|AFV61042.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           hermannioides]
          Length = 417

 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 118/261 (45%), Gaps = 6/261 (2%)

Query: 218 LQPSRIDWINLLD---RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
           L+PS + +  L++   RL + +     K A L       Q +V  YS LI+   KE+ ++
Sbjct: 159 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLA---SGVQPDVYTYSVLINGLCKESKMD 215

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           DA  +  +M   G++P+ VT T L+    K G +D A E ++ + S    PD   YN++I
Sbjct: 216 DANELFDEMLVKGLIPNGVTFTTLIDGRCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLI 275

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
                 G  K    L+D M   G++  +  Y  L+    + GD+  A +    M  E  +
Sbjct: 276 YGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIR 335

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
               + T L+    Q G    A      M+ +  KPD      +I  + KK  + K   L
Sbjct: 336 LDDVAYTALISGLCQEGRSVDAEKMLREMLSVDLKPDTGTYTMIINEFCKKGDVWKGSKL 395

Query: 455 LLELEKDGFEPGPATYTVLVD 475
           L E+++DG  P   TY VL++
Sbjct: 396 LKEMQRDGHAPSVVTYNVLMN 416



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 64/313 (20%), Positives = 145/313 (46%), Gaps = 5/313 (1%)

Query: 191 CKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELV--- 247
           C+ + + ++ L+  +       E  E   P+ + + N+L     ++  +  +VA+ V   
Sbjct: 96  CRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDI--RVAQSVFDA 153

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           +++   + +V  Y+ L++ + +   L++  R+   M  +G+ PD+ T +VL++   K   
Sbjct: 154 ITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESK 213

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           +D A E F+ +   G  P+   + ++I      G+  L M +   M++  +      Y  
Sbjct: 214 MDDANELFDEMLVKGLIPNGVTFTTLIDGRCKNGRVDLAMEIYKRMLSQSLLPDLITYNT 273

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+    + GD++ A  + + M ++  +P   + T L++   + GD D A  +   MI+  
Sbjct: 274 LIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQEN 333

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
            + DD    ++I+   ++     A  +L E+     +P   TYT++++   +   + +  
Sbjct: 334 IRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVDLKPDTGTYTMIINEFCKKGDVWKGS 393

Query: 488 QLLGKISELGEAP 500
           +LL ++   G AP
Sbjct: 394 KLLKEMQRDGHAP 406



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/267 (20%), Positives = 109/267 (40%)

Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
           E  +  ++  ++ L+    K+  +  A+ +   + + G+ P +V+   L++ Y + G+LD
Sbjct: 121 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 180

Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
                  ++ + G QPD   Y+ +I       +      L D M+  G+  +   +  L+
Sbjct: 181 EGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLI 240

Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
               + G V  A +I   M  +   P L +   L+    + GD  QA    D M   G K
Sbjct: 241 DGRCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLK 300

Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
           PD     ++I    K+  LD A      + ++        YT L+  L +     +AE++
Sbjct: 301 PDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKM 360

Query: 490 LGKISELGEAPPFKIQVSLCDMYARAG 516
           L ++  +   P       + + + + G
Sbjct: 361 LREMLSVDLKPDTGTYTMIINEFCKKG 387


>gi|359485438|ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 572

 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 72/333 (21%), Positives = 138/333 (41%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           ++ E FQ +V  Y  LI+   K      A R L+ M +    P +V  + ++    K   
Sbjct: 150 MTGEGFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQ 209

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
           L  A   F  + + G  P+   Y+S+I      G  K  + L   MI   I   +  +  
Sbjct: 210 LTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNT 269

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           L+ +  + G V  A  + ++M   + +P + +   L++ +    +  +  + FD M+R G
Sbjct: 270 LVDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKG 329

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
             P      ++I  Y K  ++DKA+ L  E+ + G  P   TY  L+  L  +  + +A 
Sbjct: 330 CVPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAI 389

Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
            L  ++   G+ P       L D   +     +A+  L  +E          +  +++G+
Sbjct: 390 ALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGM 449

Query: 548 LAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
              G L+ A+ +   + ++G     R    +I+
Sbjct: 450 CRAGELEAARDLFSKLSSKGLHPDVRTYTIMIN 482



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/327 (21%), Positives = 137/327 (41%), Gaps = 11/327 (3%)

Query: 210 LLAEWKELLQ-----------PSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVR 258
           +L  WKE ++           P ++ +  L+D L ++   +       V+ +   + +V 
Sbjct: 241 ILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMVVKAHYVVDVMIQSDLKPDVV 300

Query: 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318
            Y+ L+D H   + +     +   M   G VP +++ T L++ Y K   +D+A   FE +
Sbjct: 301 TYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPSVISYTTLINGYCKIQIMDKAMGLFEEM 360

Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
              G  PD   YN++I    + G+ +  ++L   M+  G       Y  L     +   +
Sbjct: 361 SQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRL 420

Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
             A  +  ++      P +   +++++   +AG+ + AR  F  +   G  PD R    M
Sbjct: 421 AEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIM 480

Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
           I    ++ LL +A  L  E++++G  P   TY ++     R      A QL  ++   G 
Sbjct: 481 INGLCQQGLLAEASKLFGEMDENGCSPNACTYNLITRGFLRNNETLRAIQLFQEMLSRGF 540

Query: 499 APPFKIQVSLCDMYARAGIEKKALQAL 525
           +        L +M +  G+++   Q L
Sbjct: 541 SIDVSTTTLLVEMLSDDGLDQSVKQIL 567



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 81/395 (20%), Positives = 158/395 (40%), Gaps = 51/395 (12%)

Query: 218 LQPSRIDW---INLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
            QP  + +   IN L ++   +T + F  +   + + + +  V  YS +ID+  K+  L 
Sbjct: 155 FQPDVLTYGTLINGLCKVGNTSTAIRFLRS---MEQRNCRPTVVVYSTIIDSLCKDRQLT 211

Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
           +A  +   M   GI P+  T + L+H     G+   A   F ++      PD+  +N+++
Sbjct: 212 EALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLV 271

Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
            A    G       +VD+MI S ++     Y +L+       ++     + + M  +   
Sbjct: 272 DALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCV 331

Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI--------------- 439
           P++ S T L+  Y +    D+A   F+ M + G  PD     ++I               
Sbjct: 332 PSVISYTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIAL 391

Query: 440 ----AAYG----------------KKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
                 YG                K + L +A+ LL  +E    +P    Y++++D + R
Sbjct: 392 FHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCR 451

Query: 480 LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD 539
              +  A  L  K+S  G  P  +    + +   + G+  +A +  G  E  +    P+ 
Sbjct: 452 AGELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFG--EMDENGCSPNA 509

Query: 540 FERIINGLLAGGFLQDAQRVHGL-----MEAQGFA 569
                  L+  GFL++ + +  +     M ++GF+
Sbjct: 510 CTY---NLITRGFLRNNETLRAIQLFQEMLSRGFS 541



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/258 (20%), Positives = 105/258 (40%), Gaps = 3/258 (1%)

Query: 267 HAKE---NCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGF 323
           H+K    N ++DA  +  +M      P IV  + L+   ++  +       ++ + S G 
Sbjct: 26  HSKSLNVNTIDDALSLFNRMLRMRPPPSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGI 85

Query: 324 QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQ 383
             +    N +I ++ +  +     S++  ++  G + S   +  L+R     G +  A Q
Sbjct: 86  PHNTYTLNILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQ 145

Query: 384 ITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYG 443
           + + M  E FQP + +   L+    + G+   A      M +   +P     +++I +  
Sbjct: 146 LFDKMTGEGFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLC 205

Query: 444 KKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFK 503
           K   L +AL+L  ++   G  P   TY+ L+  L  L    EA +L   +      P   
Sbjct: 206 KDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQL 265

Query: 504 IQVSLCDMYARAGIEKKA 521
              +L D   + G+  KA
Sbjct: 266 TFNTLVDALCKEGMVVKA 283



 Score = 45.4 bits (106), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 85/219 (38%), Gaps = 4/219 (1%)

Query: 347 MSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA 406
           +SL   M + GI  +      L+ SF     +  A  +   +    +QP+  + T L+  
Sbjct: 74  LSLYKQMDSFGIPHNTYTLNILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRG 133

Query: 407 YGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG 466
               G   +A   FD M   G +PD     ++I    K      A+  L  +E+    P 
Sbjct: 134 LCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPT 193

Query: 467 PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALG 526
              Y+ ++D L + + + EA  L   +   G +P      SL       G  K+A++   
Sbjct: 194 VVVYSTIIDSLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRL-- 251

Query: 527 FLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLM 563
           F      ++ PD   F  +++ L   G +  A  V  +M
Sbjct: 252 FYAMIHRKIMPDQLTFNTLVDALCKEGMVVKAHYVVDVM 290


>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 114/253 (45%), Gaps = 3/253 (1%)

Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
           LE+  + L+ M  +G VPDI+  T L+  + + G   +A +  E L   G  PD   YN 
Sbjct: 118 LEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVPDVITYNV 177

Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
           MI  Y  AG+    +S++D M    +      Y  +LRS    G ++ A ++ + M   +
Sbjct: 178 MISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRD 234

Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
             P + + T+L+EA  +     QA    D M   G  PD      ++    K+  LD+A+
Sbjct: 235 CYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAI 294

Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
             L ++   G +P   T+ +++  +       +AE+LL  +   G +P       L +  
Sbjct: 295 KFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFL 354

Query: 513 ARAGIEKKALQAL 525
            R G+  +A+  L
Sbjct: 355 CRKGLLGRAIDIL 367



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 121/247 (48%)

Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
           + F  +V  ++ LI+   ++  L  A  IL+KM ++G  P+ ++   L+H + K   +DR
Sbjct: 338 KGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDR 397

Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
           A E  E + S G  PD   YN+M+ A    G+ +  + +++ + + G       Y  ++ 
Sbjct: 398 AIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVID 457

Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
             A+ G    A ++ + MR ++ +P   + + LV    + G  D+A   F    R+G +P
Sbjct: 458 GLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRP 517

Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
           +     S++    K    D+A++ L+ +   G +P   +YT+L++ L    +  EA +LL
Sbjct: 518 NAVTFNSIMLGLCKTRQTDRAIDFLVYMINRGCKPTETSYTILIEGLAYEGMAKEALELL 577

Query: 491 GKISELG 497
            ++   G
Sbjct: 578 NELCNKG 584



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 71/333 (21%), Positives = 147/333 (44%), Gaps = 5/333 (1%)

Query: 240 YFKVAEL-----VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVT 294
           Y K  E+     VL   S   +V  Y+ ++ +      L+ A  +L +M +    PD++T
Sbjct: 182 YCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVIT 241

Query: 295 STVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMI 354
            T+L+    +   + +A +  + +R  G  PD   YN ++      G+    +  ++ M 
Sbjct: 242 YTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMP 301

Query: 355 TSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPD 414
           +SG + +   +  +LRS    G    A ++   M  + F P++ +  +L+    + G   
Sbjct: 302 SSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLG 361

Query: 415 QARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
           +A    + M + G +P+      ++  + K+  +D+A+  L  +   G  P   TY  ++
Sbjct: 362 RAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTML 421

Query: 475 DWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ 534
             L +   + +A ++L ++S  G +P      ++ D  A+AG   KA++ L  + AK  +
Sbjct: 422 TALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLK 481

Query: 535 MGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
                +  ++ GL   G + +A +     E  G
Sbjct: 482 PDTITYSSLVGGLSREGKVDEAIKFFHEFERMG 514



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 121/278 (43%)

Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
           Q NV  ++ ++ +        DAE++L  M   G  P +VT  +L++   + G L RA +
Sbjct: 306 QPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAID 365

Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
             E +  HG QP+   YN ++  +    +    +  ++ M++ G       Y  +L +  
Sbjct: 366 ILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALC 425

Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
           + G V  A +I N +  +   P L +   +++   +AG   +A    D M     KPD  
Sbjct: 426 KDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTI 485

Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
             +S++    ++  +D+A+    E E+ G  P   T+  ++  L + +  + A   L  +
Sbjct: 486 TYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGLCKTRQTDRAIDFLVYM 545

Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK 531
              G  P       L +  A  G+ K+AL+ L  L  K
Sbjct: 546 INRGCKPTETSYTILIEGLAYEGMAKEALELLNELCNK 583



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 129/295 (43%), Gaps = 4/295 (1%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V  Y+ LI+A  +++ +  A ++L +M + G  PD+VT  VLV+   K G LD A +  
Sbjct: 238 DVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFL 297

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             + S G QP+   +N ++ +  + G+      L+  M+  G   S   +  L+    + 
Sbjct: 298 NDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRK 357

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G +  A  I   M     QP   S   L+  + +    D+A    + M+  G  PD    
Sbjct: 358 GLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTY 417

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            +M+ A  K   ++ A+ +L +L   G  P   TY  ++D L +     +A +LL ++  
Sbjct: 418 NTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRA 477

Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAG 550
               P      SL    +R G   K  +A+ F   + E+MG        N ++ G
Sbjct: 478 KDLKPDTITYSSLVGGLSREG---KVDEAIKFFH-EFERMGVRPNAVTFNSIMLG 528



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/241 (20%), Positives = 104/241 (43%), Gaps = 3/241 (1%)

Query: 331 NSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRI 390
           N+ +   V  G+ + G   ++ M+  G          L+R F + G  R A +I  ++  
Sbjct: 106 NNHLRQLVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEG 165

Query: 391 EEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDK 450
               P + +  +++  Y +AG+ + A S  D   R+   PD     +++ +      L +
Sbjct: 166 SGAVPDVITYNVMISGYCKAGEINNALSVLD---RMSVSPDVVTYNTILRSLCDSGKLKQ 222

Query: 451 ALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCD 510
           A+ +L  + +    P   TYT+L++   R   + +A +LL ++ + G  P       L +
Sbjct: 223 AMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVN 282

Query: 511 MYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAA 570
              + G   +A++ L  + +   Q        I+  + + G   DA+++   M  +GF+ 
Sbjct: 283 GICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSP 342

Query: 571 S 571
           S
Sbjct: 343 S 343


>gi|242035429|ref|XP_002465109.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
 gi|241918963|gb|EER92107.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
          Length = 1153

 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 153/334 (45%), Gaps = 8/334 (2%)

Query: 219 QPSRIDWINLLDRLREQ-NTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
           +P R+ +I LLD+  +  ++Q   ++   ++++  +  N+  Y+ ++DA  +   L++A 
Sbjct: 315 KPDRVTYITLLDKCGDSGDSQSVMEIWNAMVAD-GYNDNIVSYTAVVDALCQVGRLDEAL 373

Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
            +  +M E GI P+  +   L+  + KA   DRA E F  + + G  P+   +   I  Y
Sbjct: 374 AVFDEMKEKGISPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSPNGYTHVLFINYY 433

Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
             +GQ    +   + M + GI        A+L S A+ G +  A ++   ++     P  
Sbjct: 434 GKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLSSLARSGRLGMAKRVFYELKDMGVSPDT 493

Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
            + T++++   +A   D+A + F  M+  G  PD     S+I    K    ++A  L  +
Sbjct: 494 ITYTMMIKCCSKASKADEAMNFFSDMVETGCVPDVLALNSLIDTLYKGGKGNEAWKLFHQ 553

Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI 517
           L++   EP   TY  L+  LGR   + E   LL +++     P      ++ D  ++ G 
Sbjct: 554 LKEMKIEPTNGTYNTLLSGLGREGKVKEVMHLLEEMTHSIHPPNLITYNTVLDCLSKNG- 612

Query: 518 EKKALQALGFLEAKKEQ-MGPD--DFERIINGLL 548
             +   A+G L +  E+   PD   +  ++ GL+
Sbjct: 613 --EVNCAIGMLYSMTEKGCTPDLSSYNTVMYGLI 644



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 128/295 (43%), Gaps = 10/295 (3%)

Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
           + E+    +VR YS L+ +  K+  ++    +L +M   G+ P++ + T+ + +  +A  
Sbjct: 204 MVEDGISPSVRTYSVLMVSFGKKRDVDTVLWLLNEMEARGVKPNVYSYTICIRVLGQAAR 263

Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
            D A +    +   G +PD   +  +I    +AG+      +   M  S  +     Y+ 
Sbjct: 264 FDEAYQILGKMEDSGCKPDVVTHTVVIQVLCDAGRLSDAKDVFWKMKASDQKPDRVTYIT 323

Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
           LL      GD +   +I N M  + +   + S T +V+A  Q G  D+A + FD M   G
Sbjct: 324 LLDKCGDSGDSQSVMEIWNAMVADGYNDNIVSYTAVVDALCQVGRLDEALAVFDEMKEKG 383

Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR----LQLI 483
             P+     S+I+ + K ++ D+AL L   +   G  P   T+ + +++ G+    L+ I
Sbjct: 384 ISPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSPNGYTHVLFINYYGKSGQSLKAI 443

Query: 484 NEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
              E +  K    G  P      ++    AR+G  +  +    F E K   + PD
Sbjct: 444 QRYEHMKSK----GIVPDVAAANAVLSSLARSG--RLGMAKRVFYELKDMGVSPD 492



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 130/288 (45%), Gaps = 21/288 (7%)

Query: 216  ELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESF--------QTNVRDYSKLIDAH 267
            E   P+   +  LLD L         K  ++V +E  F        + N   Y+ L++ H
Sbjct: 872  EGFSPTPCTYGPLLDGL--------LKAGKMVDAENLFNEMLEYGCKPNCTIYNILLNGH 923

Query: 268  AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK 327
                  E+  +I +KM E GI PDI + TVL+     AG L+     F  L   G +PD 
Sbjct: 924  RIAGNTENVCQIFEKMVEQGINPDIKSYTVLIDTLCTAGRLNDGLSYFRQLLELGLEPDL 983

Query: 328  KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNI 387
             +YN +I     + + +  + L + M   GI  +   Y +L+    + G    A Q+   
Sbjct: 984  IIYNLLIDGLGKSERIEEAVCLFNEMKKKGIVPNLYTYNSLILHLGKAGKASEAAQMYEE 1043

Query: 388  MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447
            + I+ ++P + +   L+  Y  +G  D A + +D  + +G         ++I+    +NL
Sbjct: 1044 LLIKGWKPNVFTYNALIRGYSVSGSTDNAYAAYD-CVAVGVS----LKTALISGLVDENL 1098

Query: 448  LDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
            ++ A  L  E+++ G  P   TY +++D +G+   I E  ++  +I+E
Sbjct: 1099 INIAEGLFAEMKRRGCGPDQFTYNLILDAIGKSMRIEEMLKVQEEIAE 1146



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 120/265 (45%)

Query: 260  YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
            Y+ ++DA  K   +E+  R+  +M+  G     VT   ++    K+  L++A + + +L 
Sbjct: 811  YNLILDAMGKSMRIEEMLRVQAEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLM 870

Query: 320  SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
            S GF P    Y  ++   + AG+     +L + M+  G + +  IY  LL      G+  
Sbjct: 871  SEGFSPTPCTYGPLLDGLLKAGKMVDAENLFNEMLEYGCKPNCTIYNILLNGHRIAGNTE 930

Query: 380  GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
               QI   M  +   P ++S T+L++    AG  +   S F  ++ LG +PD      +I
Sbjct: 931  NVCQIFEKMVEQGINPDIKSYTVLIDTLCTAGRLNDGLSYFRQLLELGLEPDLIIYNLLI 990

Query: 440  AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
               GK   +++A+ L  E++K G  P   TY  L+  LG+    +EA Q+  ++   G  
Sbjct: 991  DGLGKSERIEEAVCLFNEMKKKGIVPNLYTYNSLILHLGKAGKASEAAQMYEELLIKGWK 1050

Query: 500  PPFKIQVSLCDMYARAGIEKKALQA 524
            P      +L   Y+ +G    A  A
Sbjct: 1051 PNVFTYNALIRGYSVSGSTDNAYAA 1075



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/327 (21%), Positives = 137/327 (41%), Gaps = 35/327 (10%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           NV  Y+  I    +    ++A +IL KM ++G  PD+VT TV++ +   AG L  AK+ F
Sbjct: 247 NVYSYTICIRVLGQAARFDEAYQILGKMEDSGCKPDVVTHTVVIQVLCDAGRLSDAKDVF 306

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +++   +PD+  Y +++    ++G  +  M + + M+  G   +   Y A++ +  Q 
Sbjct: 307 WKMKASDQKPDRVTYITLLDKCGDSGDSQSVMEIWNAMVADGYNDNIVSYTAVVDALCQV 366

Query: 376 GDVRGA--------------------GQITNIMRIEEFQPTLE------SC--------- 400
           G +  A                      I+  ++ + F   LE      +C         
Sbjct: 367 GRLDEALAVFDEMKEKGISPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSPNGYTH 426

Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
            L +  YG++G   +A   +++M   G  PD     +++++  +   L  A  +  EL+ 
Sbjct: 427 VLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLSSLARSGRLGMAKRVFYELKD 486

Query: 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKK 520
            G  P   TYT+++    +    +EA      + E G  P      SL D   + G   +
Sbjct: 487 MGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVETGCVPDVLALNSLIDTLYKGGKGNE 546

Query: 521 ALQALGFLEAKKEQMGPDDFERIINGL 547
           A +    L+  K +     +  +++GL
Sbjct: 547 AWKLFHQLKEMKIEPTNGTYNTLLSGL 573



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 109/267 (40%), Gaps = 10/267 (3%)

Query: 234  EQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIV 293
            EQ   LY+      L  E F      Y  L+D   K   + DAE +  +M E G  P+  
Sbjct: 860  EQAIDLYYN-----LMSEGFSPTPCTYGPLLDGLLKAGKMVDAENLFNEMLEYGCKPNCT 914

Query: 294  TSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMM 353
               +L++ +  AGN +   + FE +   G  PD K Y  +I     AG+   G+S    +
Sbjct: 915  IYNILLNGHRIAGNTENVCQIFEKMVEQGINPDIKSYTVLIDTLCTAGRLNDGLSYFRQL 974

Query: 354  ITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDP 413
            +  G+E    IY  L+    +   +  A  + N M+ +   P L +   L+   G+AG  
Sbjct: 975  LELGLEPDLIIYNLLIDGLGKSERIEEAVCLFNEMKKKGIVPNLYTYNSLILHLGKAGKA 1034

Query: 414  DQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVL 473
             +A   ++ ++  G KP+     ++I  Y      D A         D    G +  T L
Sbjct: 1035 SEAAQMYEELLIKGWKPNVFTYNALIRGYSVSGSTDNAY-----AAYDCVAVGVSLKTAL 1089

Query: 474  VDWLGRLQLINEAEQLLGKISELGEAP 500
            +  L    LIN AE L  ++   G  P
Sbjct: 1090 ISGLVDENLINIAEGLFAEMKRRGCGP 1116



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 129/321 (40%), Gaps = 5/321 (1%)

Query: 260  YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
            Y+ LI     EN ++ AE +  +M   G  PD  T  +++    K+  ++        + 
Sbjct: 776  YNSLIRGLVDENLIDIAEDLFTEMKRLGCGPDEFTYNLILDAMGKSMRIEEMLRVQAEMH 835

Query: 320  SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
              G++     YN++I   V + + +  + L   +++ G   +   Y  LL    + G + 
Sbjct: 836  RKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKAGKMV 895

Query: 380  GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
             A  + N M     +P      +L+  +  AG+ +     F+ M+  G  PD +    +I
Sbjct: 896  DAENLFNEMLEYGCKPNCTIYNILLNGHRIAGNTENVCQIFEKMVEQGINPDIKSYTVLI 955

Query: 440  AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
                    L+  L+   +L + G EP    Y +L+D LG+ + I EA  L  ++ + G  
Sbjct: 956  DTLCTAGRLNDGLSYFRQLLELGLEPDLIIYNLLIDGLGKSERIEEAVCLFNEMKKKGIV 1015

Query: 500  PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
            P      SL     +AG   +A Q    L  K  +     +  +I G    G   +A   
Sbjct: 1016 PNLYTYNSLILHLGKAGKASEAAQMYEELLIKGWKPNVFTYNALIRGYSVSGSTDNAYAA 1075

Query: 560  HGLMEAQGFAASERLKVALIS 580
            +  +     A    LK ALIS
Sbjct: 1076 YDCV-----AVGVSLKTALIS 1091



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/243 (19%), Positives = 106/243 (43%), Gaps = 1/243 (0%)

Query: 283 MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
           M   GIVPD+  +  ++   +++G L  AK  F  L+  G  PD   Y  MI     A +
Sbjct: 449 MKSKGIVPDVAAANAVLSSLARSGRLGMAKRVFYELKDMGVSPDTITYTMMIKCCSKASK 508

Query: 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402
               M+    M+ +G         +L+ +  + G    A ++ + ++  + +PT  +   
Sbjct: 509 ADEAMNFFSDMVETGCVPDVLALNSLIDTLYKGGKGNEAWKLFHQLKEMKIEPTNGTYNT 568

Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
           L+   G+ G   +     + M    H P+     +++    K   ++ A+ +L  + + G
Sbjct: 569 LLSGLGREGKVKEVMHLLEEMTHSIHPPNLITYNTVLDCLSKNGEVNCAIGMLYSMTEKG 628

Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522
             P  ++Y  ++  L + +   EA ++  ++ ++  AP +    ++   + + G+ K+AL
Sbjct: 629 CTPDLSSYNTVMYGLIKEERFEEAFRMFCQMKKI-LAPDYATLCTILPSFVKNGLMKEAL 687

Query: 523 QAL 525
             +
Sbjct: 688 HTV 690



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/321 (21%), Positives = 121/321 (37%), Gaps = 7/321 (2%)

Query: 262 KLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSH 321
           +L+ AH +   + D  ++   M +  +  ++ T   +       G L  A  A   +R  
Sbjct: 116 ELMRAHGR---VGDMAQVFDLMQKQIVKANVGTFATVFSGVGVQGGLRSAPVALPVMREA 172

Query: 322 GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGA 381
           G   +   YN +I   V +G     M +   M+  GI  S   Y  L+ SF +  DV   
Sbjct: 173 GMSLNGYTYNGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVSFGKKRDVDTV 232

Query: 382 GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441
             + N M     +P + S T+ +   GQA   D+A      M   G KPD      +I  
Sbjct: 233 LWLLNEMEARGVKPNVYSYTICIRVLGQAARFDEAYQILGKMEDSGCKPDVVTHTVVIQV 292

Query: 442 YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
                 L  A ++  +++    +P   TY  L+D  G         ++   +   G    
Sbjct: 293 LCDAGRLSDAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVMEIWNAMVADGYNDN 352

Query: 502 FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRV 559
                ++ D   + G   +AL    F E K++ + P+   +  +I+G L       A  +
Sbjct: 353 IVSYTAVVDALCQVGRLDEALAV--FDEMKEKGISPEQYSYNSLISGFLKADMFDRALEL 410

Query: 560 HGLMEAQGFAASERLKVALIS 580
              M A G + +    V  I+
Sbjct: 411 FNHMNACGPSPNGYTHVLFIN 431



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/298 (19%), Positives = 124/298 (41%), Gaps = 2/298 (0%)

Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
           ++ ++  + NV  ++ +      +  L  A   L  M E G+  +  T   L++   K+G
Sbjct: 133 LMQKQIVKANVGTFATVFSGVGVQGGLRSAPVALPVMREAGMSLNGYTYNGLIYFLVKSG 192

Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
               A E ++++   G  P  + Y+ +++++         + L++ M   G++ +   Y 
Sbjct: 193 FDAEAMEVYKAMVEDGISPSVRTYSVLMVSFGKKRDVDTVLWLLNEMEARGVKPNVYSYT 252

Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
             +R   Q      A QI   M     +P + + T++++    AG    A+  F  M   
Sbjct: 253 ICIRVLGQAARFDEAYQILGKMEDSGCKPDVVTHTVVIQVLCDAGRLSDAKDVFWKMKAS 312

Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
             KPD     +++   G        + +   +  DG+     +YT +VD L ++  ++EA
Sbjct: 313 DQKPDRVTYITLLDKCGDSGDSQSVMEIWNAMVADGYNDNIVSYTAVVDALCQVGRLDEA 372

Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERII 544
             +  ++ E G +P      SL   + +A +  +AL+    + A      P+ +  ++
Sbjct: 373 LAVFDEMKEKGISPEQYSYNSLISGFLKADMFDRALELFNHMNACGPS--PNGYTHVL 428



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/231 (21%), Positives = 94/231 (40%), Gaps = 1/231 (0%)

Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
           +V   + ++ + A+   L  A+R+  ++ + G+ PD +T T+++   SKA   D A   F
Sbjct: 457 DVAAANAVLSSLARSGRLGMAKRVFYELKDMGVSPDTITYTMMIKCCSKASKADEAMNFF 516

Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
             +   G  PD    NS+I      G+      L   +    IE +   Y  LL    + 
Sbjct: 517 SDMVETGCVPDVLALNSLIDTLYKGGKGNEAWKLFHQLKEMKIEPTNGTYNTLLSGLGRE 576

Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
           G V+    +   M      P L +   +++   + G+ + A      M   G  PD    
Sbjct: 577 GKVKEVMHLLEEMTHSIHPPNLITYNTVLDCLSKNGEVNCAIGMLYSMTEKGCTPDLSSY 636

Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
            +++    K+   ++A  +  +++K    P  AT   ++    +  L+ EA
Sbjct: 637 NTVMYGLIKEERFEEAFRMFCQMKKI-LAPDYATLCTILPSFVKNGLMKEA 686


>gi|255553476|ref|XP_002517779.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543051|gb|EEF44586.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 486

 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 74/324 (22%), Positives = 142/324 (43%), Gaps = 2/324 (0%)

Query: 230 DRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIV 289
           D ++E+  +   K+ EL+  +  ++   + Y+KL+    K    E+A  + + M   G+ 
Sbjct: 101 DAIKERRWKSALKIFELLRKQHWYEPRCQTYTKLLMMLGKCRQPEEARLLFEVMQTEGLR 160

Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRS-HGFQPDKKVYNSMIMAYVNAGQPKLGMS 348
           P I   T LV  Y ++G L +A    + ++S    +PD   Y+ +I       +  L   
Sbjct: 161 PTIDVYTALVSAYGESGLLAKAFSTVDEMKSVSDCKPDVYTYSVLINICTKLHRFDLIGR 220

Query: 349 LVDMMITSGIERSEEIYLALLRSFAQCGDVRGA-GQITNIMRIEEFQPTLESCTLLVEAY 407
           ++  M   G+E S   +  ++  + +    R     +TN++ I    P L +   ++ AY
Sbjct: 221 ILSEMSYLGVECSTVTFNTIINGYGKAKMFREMENSLTNMIEIGNSVPDLFTFNSVIGAY 280

Query: 408 GQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGP 467
           G +G  ++    ++    +G  PD +    +I +YGK  + +K  +++  ++K  F P  
Sbjct: 281 GNSGRIEKMEKWYNEFQLMGISPDIKTFNILIKSYGKAGMYEKINSVIEFMKKRFFPPTV 340

Query: 468 ATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGF 527
            TY ++++  GR   I   ++    +  LG  P      SL   Y++AG+  K    L  
Sbjct: 341 VTYNIIIETFGRAGDIENMDEYFKTMKHLGMKPNAITYCSLVSAYSKAGLLMKVNSILRQ 400

Query: 528 LEAKKEQMGPDDFERIINGLLAGG 551
           +E     +    F  IIN     G
Sbjct: 401 VENSDVVLDTTFFNCIINAYGQAG 424



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 129/286 (45%), Gaps = 2/286 (0%)

Query: 241 FKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
           F   + + S    + +V  YS LI+   K +  +   RIL +M+  G+    VT   +++
Sbjct: 183 FSTVDEMKSVSDCKPDVYTYSVLINICTKLHRFDLIGRILSEMSYLGVECSTVTFNTIIN 242

Query: 301 MYSKAGNLDRAKEAFESLRSHGFQ-PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
            Y KA      + +  ++   G   PD   +NS+I AY N+G+ +      +     GI 
Sbjct: 243 GYGKAKMFREMENSLTNMIEIGNSVPDLFTFNSVIGAYGNSGRIEKMEKWYNEFQLMGIS 302

Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419
              + +  L++S+ + G       +   M+   F PT+ +  +++E +G+AGD +     
Sbjct: 303 PDIKTFNILIKSYGKAGMYEKINSVIEFMKKRFFPPTVVTYNIIIETFGRAGDIENMDEY 362

Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
           F  M  LG KP+     S+++AY K  LL K  ++L ++E          +  +++  G+
Sbjct: 363 FKTMKHLGMKPNAITYCSLVSAYSKAGLLMKVNSILRQVENSDVVLDTTFFNCIINAYGQ 422

Query: 480 LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
              +++  +L  ++ E    P      ++   Y   G+ + A QAL
Sbjct: 423 AGDVDKMAELFLEMRERECMPDNVTFATMIQAYRGQGMTEAA-QAL 467



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 4/122 (3%)

Query: 235 QNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVT 294
           +N   YFK     +     + N   Y  L+ A++K   L     IL+++  + +V D   
Sbjct: 357 ENMDEYFKT----MKHLGMKPNAITYCSLVSAYSKAGLLMKVNSILRQVENSDVVLDTTF 412

Query: 295 STVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMI 354
              +++ Y +AG++D+  E F  +R     PD   + +MI AY   G  +   +L  MM+
Sbjct: 413 FNCIINAYGQAGDVDKMAELFLEMRERECMPDNVTFATMIQAYRGQGMTEAAQALEKMML 472

Query: 355 TS 356
            +
Sbjct: 473 AA 474


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.316    0.134    0.379 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,030,113,833
Number of Sequences: 23463169
Number of extensions: 379031050
Number of successful extensions: 1323981
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 6304
Number of HSP's successfully gapped in prelim test: 5651
Number of HSP's that attempted gapping in prelim test: 1195916
Number of HSP's gapped (non-prelim): 64746
length of query: 592
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 444
effective length of database: 8,886,646,355
effective search space: 3945670981620
effective search space used: 3945670981620
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 80 (35.4 bits)