BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007695
(592 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SR9|A Chain A, Crystal Structure Of Mouse Ptpsigma
Length = 583
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 25 ASASPSQDFSEDLWRTVWEVSNLVLEDMEKARK--KEKMKGFLQSDKVKEMSRFA----G 78
A+ P + +ED WR +WE ++ ++ + K R+ +EK + +++ F
Sbjct: 393 ATQGPLAETTEDFWRALWENNSTIVVMLTKLREMGREKCHQYWPAERSARYQYFVVDPMA 452
Query: 79 EIGIRGDMLRELRFKWARE 97
E + +LRE + AR+
Sbjct: 453 EYNMPQYILREFKVTDARD 471
>pdb|1LAR|A Chain A, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Lar
pdb|1LAR|B Chain B, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Lar
Length = 575
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 25 ASASPSQDFSEDLWRTVWEVSNLVLEDMEKARK--KEKMKGFLQSDKVKEMSRFA----G 78
A+ P + +ED WR +WE ++ ++ + K R+ +EK + +++ F
Sbjct: 379 ATQGPLAESTEDFWRMLWEHNSTIIVMLTKLREMGREKCHQYWPAERSARYQYFVVDPMA 438
Query: 79 EIGIRGDMLRELRFKWARE 97
E + +LRE + AR+
Sbjct: 439 EYNMPQYILREFKVTDARD 457
>pdb|2FH7|A Chain A, Crystal Structure Of The Phosphatase Domains Of Human Ptp
Sigma
Length = 595
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 25 ASASPSQDFSEDLWRTVWEVSNLVLEDMEKARK--KEKMKGFLQSDKVKEMSRFA----G 78
A+ P + +ED WR +WE ++ ++ + K R+ +EK + +++ F
Sbjct: 391 ATQGPLAETTEDFWRMLWENNSTIVVMLTKLREMGREKCHQYWPAERSARYQYFVVDPMA 450
Query: 79 EIGIRGDMLRELRFKWARE 97
E + +LRE + AR+
Sbjct: 451 EYNMPQYILREFKVTDARD 469
>pdb|3KEZ|A Chain A, Crystal Structure Of Putative Sugar Binding Protein
(Yp_001299726.1) From Bacteroides Vulgatus Atcc 8482 At
1.90 A Resolution
pdb|3KEZ|B Chain B, Crystal Structure Of Putative Sugar Binding Protein
(Yp_001299726.1) From Bacteroides Vulgatus Atcc 8482 At
1.90 A Resolution
Length = 461
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 326 DKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD-VRGAGQI 384
DKK Y AYVN QP+ G ++ D I + R E YL + Q GD + +
Sbjct: 309 DKKYY-----AYVNKYQPQQGENITDANIP--LIRLSEAYLNAAEAAVQTGDNAKAVKYL 361
Query: 385 TNIMRIEEFQPTLESCTLLVE 405
+I++ + ++E TL +E
Sbjct: 362 NSIVQRANPENSVEGKTLTLE 382
>pdb|2JJD|A Chain A, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|B Chain B, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|C Chain C, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|D Chain D, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|E Chain E, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|F Chain F, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
Length = 599
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 25 ASASPSQDFSEDLWRTVWE--VSNLVLEDMEKARKKEKMKGF 64
A+ P Q+ D WR VWE + +V+ K RK+EK +
Sbjct: 101 AAQGPKQETVNDFWRMVWEQKSATIVMLTNLKERKEEKCHQY 142
>pdb|3LVG|A Chain A, Crystal Structure Of A Clathrin Heavy Chain And Clathrin
Lig Complex
pdb|3LVG|B Chain B, Crystal Structure Of A Clathrin Heavy Chain And Clathrin
Lig Complex
pdb|3LVG|C Chain C, Crystal Structure Of A Clathrin Heavy Chain And Clathrin
Lig Complex
pdb|3LVH|A Chain A, Crystal Structure Of A Clathrin Heavy Chain And Clathrin
Light Chain Complex
pdb|3LVH|B Chain B, Crystal Structure Of A Clathrin Heavy Chain And Clathrin
Light Chain Complex
pdb|3LVH|C Chain C, Crystal Structure Of A Clathrin Heavy Chain And Clathrin
Light Chain Complex
Length = 624
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 48/127 (37%), Gaps = 21/127 (16%)
Query: 287 GIVP--------DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGF-------QPDKKVYN 331
G+VP D+ TS V V + GNLDRA E E Q K +
Sbjct: 13 GLVPRGSHMLKFDVNTSAVQV-LIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVK 71
Query: 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR-----SFAQCGDVRGAGQITN 386
I +Y+ A P M +V TSG YL + R S+ + + +
Sbjct: 72 EAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNR 131
Query: 387 IMRIEEF 393
+ +EEF
Sbjct: 132 LAELEEF 138
>pdb|4B4T|P Chain P, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 445
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 65/145 (44%), Gaps = 20/145 (13%)
Query: 191 CKLITDKILSLEKEEDPSPLLAEWKELLQ------PSRIDWINLLDRLREQNTQLYFKVA 244
C D++L LEK+ + LA KE+L SR W D L EQ T L K
Sbjct: 32 CNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKW----DDLNEQLTLLSKKHG 87
Query: 245 ELVLSEESFQTNVRDY---SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTV---L 298
+L LS + V +Y SK +D + + + +E ++ + EN I ++ + V L
Sbjct: 88 QLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIE----TIRVVTENKIFVEVERARVTKDL 143
Query: 299 VHMYSKAGNLDRAKEAFESLRSHGF 323
V + + G +D A + L+ +
Sbjct: 144 VEIKKEEGKIDEAADILCELQVETY 168
>pdb|1B89|A Chain A, Clathrin Heavy Chain Proximal Leg Segment (Bovine)
Length = 449
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 44/115 (38%), Gaps = 13/115 (11%)
Query: 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGF-------QPDKKVYNSMIMAYVNAGQP 343
D+ TS V V + GNLDRA E E Q K + I +Y+ A P
Sbjct: 3 DVNTSAVQV-LIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDP 61
Query: 344 KLGMSLVDMMITSGIERSEEIYLALLR-----SFAQCGDVRGAGQITNIMRIEEF 393
M +V TSG YL + R S+ + + + + +EEF
Sbjct: 62 SSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEF 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,917,746
Number of Sequences: 62578
Number of extensions: 611618
Number of successful extensions: 1705
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1696
Number of HSP's gapped (non-prelim): 21
length of query: 592
length of database: 14,973,337
effective HSP length: 104
effective length of query: 488
effective length of database: 8,465,225
effective search space: 4131029800
effective search space used: 4131029800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)